Citrus Sinensis ID: 002494
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 915 | 2.2.26 [Sep-21-2011] | |||||||
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | yes | no | 0.933 | 0.755 | 0.694 | 0.0 | |
| Q0WV90 | 1120 | Topless-related protein 1 | no | no | 0.921 | 0.752 | 0.689 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.943 | 0.760 | 0.653 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.935 | 0.756 | 0.651 | 0.0 | |
| Q84JM4 | 1108 | Topless-related protein 3 | no | no | 0.925 | 0.764 | 0.612 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.343 | 0.231 | 0.270 | 2e-18 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.286 | 0.171 | 0.241 | 1e-09 | |
| P49695 | 742 | Probable serine/threonine | no | no | 0.155 | 0.191 | 0.318 | 2e-08 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.396 | 0.215 | 0.257 | 3e-08 | |
| P93107 | 606 | Flagellar WD repeat-conta | N/A | no | 0.212 | 0.320 | 0.237 | 4e-08 |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function desciption |
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Score = 1245 bits (3222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/885 (69%), Positives = 714/885 (80%), Gaps = 31/885 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+ DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC P NGAR P P NNPL+G IPKAG FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGP-PNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++AG PS LKHPRTP +DY S
Sbjct: 240 QPTASPVPTPLAGWMSSPS-SVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPS 297
Query: 301 ADSDHLMKRIR-TGQSDEV---------SFAGVAH--TPNVYSQDDLTKTVVRTLNQGSN 348
ADS+H+ KR R G SDEV SF+G AH +P + DDL KTV RTL+QGS+
Sbjct: 298 ADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDI+F+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C++TCGDDK IKVWD G K++TFEGHEAPVYSVCPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDYDAPG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +D DGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
V+ ++N IKI+ANSDG+RLL E + + SSKP IN++ A+ +A A
Sbjct: 658 VSGNENVIKIMANSDGLRLLHTFENISSE---------SSKP-AINSIAAAAAAAATSA- 706
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 767
DR VSI + D +VDVKP + E+ DK K W++ ++S+PSQ ++LRLP
Sbjct: 707 --GHADRSANVVSIQGMNG-DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLP 763
Query: 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 827
+++ +K+ RLI+TNSG ++LALASNA+H LWKWQR ERN +GKATA++ PQ WQP SG
Sbjct: 764 ENLRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGI 823
Query: 828 LMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872
LMTND+ E+ P EE+ C ALSKNDSYVMSASGGK+SLFNMMTFK
Sbjct: 824 LMTNDVAETNP-EEAVPCFALSKNDSYVMSASGGKISLFNMMTFK 867
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1238 bits (3204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/885 (68%), Positives = 707/885 (79%), Gaps = 42/885 (4%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC N AR P P NNPL+G +PKA FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCR-LPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++ GP PS LKHPRTP + +DY S
Sbjct: 240 QPTPSPVPTPLAGWMSSPS-SVPHPAVSGGPIALGAPSIQAA-LKHPRTPPSNSAVDYPS 297
Query: 301 ADSDHLMKRIR-TGQSDEVS---------FAGVAHTPN--VYSQDDLTKTVVRTLNQGSN 348
DSDH+ KR R G SDEVS F G AH N + DDL KTV RTL+QGS+
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDIAF+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C+ TCGDDK IKVWD G K+YTFEGHEAPVYS+CPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDY+APG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +DADGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
V+ +DN IK++ANSDG+RLL +E + + SSKP IN++ P
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENLSSE---------SSKP-AINSI-----------P 696
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 767
+ERP VSI + D +VDVKP + E+ DK K W++ ++ +PSQ ++LRLP
Sbjct: 697 MVERPAS---VVSIPGMNG-DSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLP 752
Query: 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 827
+++ +K+ RLI+TNSG ++LALASNA+H LWKWQR +RN +GKATA++ PQ WQP SG
Sbjct: 753 ENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGI 812
Query: 828 LMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872
LMTND+ E+ P EE+ C ALSKNDSYVMSASGGK+SLFNMMTFK
Sbjct: 813 LMTNDVAETNP-EEAVPCFALSKNDSYVMSASGGKISLFNMMTFK 856
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Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1199 bits (3101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/886 (65%), Positives = 702/886 (79%), Gaps = 23/886 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFK+TVH+LE+ESGFFFNM++FED V AGEWD+VE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD++D AKAV+ILVK+LKVFS+FNEELFKEIT LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L NFR+NEQLSKYGDTKSAR IML ELKKLIEANPLFRDKL FPS K+SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DH+C NGA P PT N L+G +PK G FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHTCG-HPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKH--PRTP-TGMTGMD 297
QP +P ++AGWM + PS+ HP+++AGP G P+SAV LK PR+P T MD
Sbjct: 240 QPTPAPLTTSLAGWMPN--PSVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSMD 297
Query: 298 YQSADSDHLMKRIRT-GQSD----------EVSFAGVAHTPNVYSQDDLTKTVVRTLNQG 346
YQ+ADS+ ++KR R G SD V++ G +H YS DDL K V R L+QG
Sbjct: 298 YQTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRILSQG 357
Query: 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406
S + SMDFHP QQT+LLVGTN+GDI++WEVGSRE+L + FKVWD++ ++ LQ +L ++
Sbjct: 358 SAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLASE 417
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
+VNR VW PDG +LGVA+SKHIVH+Y+Y+ +LR HLEIDAH G VND+AF+ PN+
Sbjct: 418 YTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQPNQ 477
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
QLC+VTCG+DK IKVWD V G K +TFEGHEAPVYSVCPH KE+IQFIFSTA+DGKIKAW
Sbjct: 478 QLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAW 537
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586
LYD +GSRVDYDAPG CT MAY ADGTRLFSCGTSKEGES +VEWNESEGA+KRTY G
Sbjct: 538 LYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYLGL 597
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646
KRS+GVVQFDT +N+FL AGDEFQ+KFWDMD++++L++ A+GGLP+SP LR NKEG+L
Sbjct: 598 GKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEGTL 657
Query: 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAI 706
LAV+T+DNGIKILAN++G R+L + R +D +R P ++ P+ +G +++
Sbjct: 658 LAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPI----VGTFGTPNSST 713
Query: 707 APTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766
+L +R P S++ L D L DVKPR+A+D +K K+W++ +IS+ SQ++ LRL
Sbjct: 714 GMSLSMGERSGPVASVTGLNG-DNRSLPDVKPRIADDAEKSKTWKLTEISERSQLRTLRL 772
Query: 767 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSG 826
PD++ ++VV+LIYTNSG ++LALA NA HKLWKWQ++ERN GKA +NV PQLWQP SG
Sbjct: 773 PDTLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPSSG 832
Query: 827 TLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872
LMTND E E+ C ALSKNDSYVMSASGGK+SLFNMMTFK
Sbjct: 833 VLMTNDTREGN-KEDVVPCFALSKNDSYVMSASGGKISLFNMMTFK 877
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1147 bits (2966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/879 (65%), Positives = 694/879 (78%), Gaps = 23/879 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+K+FE++ AGEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DRAKAVEIL KDLKVF++FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR+IM ELKKLIEANPLFR+KL+FPSFK+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH-GP 239
WQHQLCKNPRPNPDIKTLF DHSC+P SNGAR P N P V + + F P+G H GP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSP-SNGARALTPVNLP-VAAVARPSNFVPLGVHGGP 238
Query: 240 FQP--VVSPSPGAIAGWMSSNSPSLPHPS-MAAGPPGFVQPSSAVGFLKHPRTPTGMTG- 295
FQ +P+ A+AGWM++ +PS PS + A P +QPS V LKHPR P+ G
Sbjct: 239 FQSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQ-VNELKHPRAPSNSLGL 297
Query: 296 MDYQSADSDHLMKRIRTGQ-SDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
MDYQSAD + LMKR+R+ Q S+EV++ +H P S DDL + VV T+ QGS V+SMDF
Sbjct: 298 MDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPP--ASLDDLPRNVVSTIRQGSVVISMDF 355
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414
HP T+L VG + G+++LWEVGSRE++ +PFK+W+++A S+ Q +++ + +ISV R
Sbjct: 356 HPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRV 415
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
W PDG +LGV+F+KH++H+Y Y + +LRQHLEIDAHVG VND+AFAHPNKQ+C+VTCG
Sbjct: 416 AWSPDGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCG 474
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
DDK+IKVWD ++G+K +TFEGHEAPVYS+CPH KE+IQFIFSTA+DGKIKAWLYD +GSR
Sbjct: 475 DDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSR 533
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 594
VDYDAPG WCT M YSADG+RLFSCGTSKEG+S LVEWNESEGA+KRTY GFRK+S GVV
Sbjct: 534 VDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVV 593
Query: 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654
QFDTTRNRFLA G++ QIKFW+MDN N+LT V+A+GGLP PRLRFNK+G+LLAVTT+DN
Sbjct: 594 QFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADN 653
Query: 655 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714
G KILAN+DG+R LR E R+ + ++ +S + ++ AS++S AI +E D
Sbjct: 654 GFKILANTDGLRTLRAFEARSFEASK------ASIDMKVSTSAMASSISPAIG-KIEHMD 706
Query: 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI-AAS 773
G PA I+ KPR + VDK K + +I DP+Q + + +PDS + S
Sbjct: 707 AGSPARPTPIPNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSVS 766
Query: 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDI 833
KV RL+YTNSG+ +LAL SN V +LWKW R E+NP+GKATA+V PQ WQP SG LM ND+
Sbjct: 767 KVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDV 826
Query: 834 NESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872
E+ E S CIALSKNDSYVMSA GGKVSLFNMMTFK
Sbjct: 827 PENP--EGSVPCIALSKNDSYVMSACGGKVSLFNMMTFK 863
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/877 (61%), Positives = 656/877 (74%), Gaps = 30/877 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFL+EEKFKE+VH+LE+ESGFFFN K+F+++V AGEWD+VE YL GF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDRQ++AKAVEILV+DL+VFS+FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L NFR+NEQLSKYGDTK+AR IML ELKKLIEANPLFRDKL FP+ +SSRLRTLINQSLN
Sbjct: 121 LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH-GP 239
WQHQLCKNPRPNPDIKTLFTDH+C NG P N P V + K +P +G H
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCT-LPNGPLAPSAVNQP-VTTLTKPAAYPSLGPHVPF 238
Query: 240 FQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGM-DY 298
+ + GA+A WM++ S + + P QP + + LK PRTP G+ DY
Sbjct: 239 PPGPAAANAGALASWMAAASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPATPGIVDY 298
Query: 299 QSADSDHLMKRIRTGQS-DEVSF-AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHP 356
Q+ D + LMKR+R S +EV++ A P +S +DL L+QGS V SM+F+P
Sbjct: 299 QNPDHE-LMKRLRPAPSVEEVTYPAPRQQAP--WSLEDLPTKAALALHQGSTVTSMEFYP 355
Query: 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416
Q T+LLVG+ G+I+LWE+ +RERL +PFK+WD+S S Q + + ISV R W
Sbjct: 356 MQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIAKETPISVTRVAW 415
Query: 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476
PDG +GVAF+KH++ LY ++ +LRQH EIDAHVG VND+AFA+PN+QLC++TCGDD
Sbjct: 416 SPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDD 475
Query: 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536
K+IKVWD V+GRK +TFEGH+APVYS+CPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVD
Sbjct: 476 KLIKVWD-VSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVD 534
Query: 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596
YDAPG WCT M YSADGTRLFSCGTSK+G+S LVEWNESEG+IKRTY F+K+ GVVQF
Sbjct: 535 YDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYKEFQKKLAGVVQF 594
Query: 597 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656
DT++N FLA G++ QIKFWDM+N+N+LT+ DA+GGLPA P LRFNK+G+LLAVTT+DNG
Sbjct: 595 DTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDGNLLAVTTADNGF 654
Query: 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716
KILAN G R LR +E A + R P + + P P ++V+ + +RG
Sbjct: 655 KILANPAGFRSLRAMETPASETMRTPVD-FKAVP-----GAPVASVNCKV-------ERG 701
Query: 717 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS-KV 775
P L +D S K R+ + DK KSW++ +I DPSQ LPD+ +S KV
Sbjct: 702 SPVRHSQMLNGVDPS-----KSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKV 756
Query: 776 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 835
V+L+YTNSG +LAL SN + +LWKW E+NPSGKATA V PQ WQP SG LMTND++
Sbjct: 757 VQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSG 816
Query: 836 SKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872
E +A CIALSKNDSYVMSA+GGKVSLFNMMTFK
Sbjct: 817 VN-LENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFK 852
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 149/359 (41%), Gaps = 45/359 (12%)
Query: 308 KRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTL-NQGSNVMSMDFHPQQQTILLVGT 366
+R+ +G D HT ++ D + T +TL GS+V+S+ F P Q V +
Sbjct: 938 QRVASGSDD--------HTIKIW--DAASGTCTQTLEGHGSSVLSVAFSPDGQR---VAS 984
Query: 367 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426
GD K K+WD ++ + L SV + PDG +
Sbjct: 985 GSGD--------------KTIKIWDTASGTC---TQTLEGHGGSVWSVAFSPDGQRVASG 1027
Query: 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486
+ ++ +G Q LE H G V + F+ P+ Q + + DD IK+WD V+
Sbjct: 1028 SDDKTIKIWD-TASGTCTQTLE--GHGGWVQSVVFS-PDGQR-VASGSDDHTIKIWDAVS 1082
Query: 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 546
G T EGH V+SV Q + S +IDG IK W + G W
Sbjct: 1083 GTCTQTLEGHGDSVWSVA--FSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHS 1140
Query: 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606
+A+S DG R+ S S +G + W+ + G +T G + V F R +
Sbjct: 1141 VAFSPDGQRVAS--GSIDGTIKI--WDAASGTCTQTLEG-HGGWVQSVAFSPDGQRVASG 1195
Query: 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665
+ IK WD + T++ GG S + F+ +G +A +SDN IKI + G
Sbjct: 1196 SSDKTIKIWDTASGTCTQTLEGHGGWVQS--VAFSPDGQRVASGSSDNTIKIWDTASGT 1252
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 122/281 (43%), Gaps = 19/281 (6%)
Query: 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 444
+ ++WDIS++ +L VN V+ PDG L S V L+ N + L
Sbjct: 1180 QTVRLWDISSSKCLY---ILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCL- 1235
Query: 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H VN + F +P+ + + + DK +++WD+ + + +TF+GH V SV
Sbjct: 1236 --CTFQGHTSWVNSVVF-NPDGSM-LASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVA 1291
Query: 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564
+ S+ + S + D ++ W + +W + + +S DGT L S
Sbjct: 1292 FNPDGSM--LASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTML----ASGS 1345
Query: 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNML 623
+ + W+ S G T+ G +G V F + LA+G Q ++ W + + L
Sbjct: 1346 DDQTVRLWSISSGECLYTFLG-HTNWVGSVIF-SPDGAILASGSGDQTVRLWSISSGKCL 1403
Query: 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664
T+ S + F+ +G+LLA + D +++ S G
Sbjct: 1404 YTLQGHNNWVGS--IVFSPDGTLLASGSDDQTVRLWNISSG 1442
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 15/157 (9%)
Query: 370 DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK 429
D S+ GSR+ ++WD++ + +L A +V + PDG ML V S
Sbjct: 596 DGSMVASGSRDGT----IRLWDVATGK---ERDVLQAPAENVVSLAFSPDGSML-VHGSD 647
Query: 430 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489
VHL+ +GE E H V +AF+ P+ L + + DD+ I++WDV A +
Sbjct: 648 STVHLWDVA-SGEALHTFE--GHTDWVRAVAFS-PDGAL-LASGSDDRTIRLWDVAAQEE 702
Query: 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
T EGH PV+SV H + + + S + DG I+ W
Sbjct: 703 HTTLEGHTEPVHSVAFHPEGTT--LASASEDGTIRIW 737
|
May play a regulatory role during the complex growth cycle and in secondary metabolite production. Thermomonospora curvata (taxid: 2020) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 109/424 (25%), Positives = 169/424 (39%), Gaps = 61/424 (14%)
Query: 295 GMDYQSADSDHLMK----------RIRTGQSD---EVSFAGVAHTPNVYSQDDLTK---- 337
G + SA SDH +K TG S V F+ T S+D K
Sbjct: 1167 GKNLASASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLWHR 1226
Query: 338 ---TVVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRE---RLAHKPFKVW 390
+++TLN + V S+ F P +T+ + I LW + + L VW
Sbjct: 1227 QDGKLLKTLNGHQDWVNSLSFSPDGKTLASASAD-KTIKLWRIADGKLVKTLKGHNDSVW 1285
Query: 391 D---------ISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF--SKHIVHLYTYNP 439
D I++AS L N I + G G + V F +I+ + +
Sbjct: 1286 DVNFSSDGKAIASASRDNTIKLWNRHGIELETFT-GHSGGVYAVNFLPDSNIIASASLDN 1344
Query: 440 TGELRQH-----LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494
T L Q LE+ A GV ++F H I T G D I++W G T
Sbjct: 1345 TIRLWQRPLISPLEVLAGNSGVYAVSFLHDGS--IIATAGADGNIQLWHSQDGSLLKTLP 1402
Query: 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY---DYLGSRVDYDAPGNWCTMMAYSA 551
G++A +Y + + + I S D +K W L + + +D N + +S
Sbjct: 1403 GNKA-IYGISFTPQGDL--IASANADKTVKIWRVRDGKALKTLIGHD---NEVNKVNFSP 1456
Query: 552 DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ 611
DG L S S++ L WN S+G K+T G V F +A +
Sbjct: 1457 DGKTLASA--SRDNTVKL--WNVSDGKFKKTLKGHTDEVFWV-SFSPDGKIIASASADKT 1511
Query: 612 IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671
I+ WD + N++ ++ A L S + FN +GS+LA T++D +K+ + DG LL
Sbjct: 1512 IRLWDSFSGNLIKSLPAHNDLVYS--VNFNPDGSMLASTSADKTVKLWRSHDG-HLLHTF 1568
Query: 672 EGRA 675
G +
Sbjct: 1569 SGHS 1572
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P93107|PF20_CHLRE Flagellar WD repeat-containing protein Pf20 OS=Chlamydomonas reinhardtii GN=PF20 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 33/227 (14%)
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509
+ H V + F HP C+ + G D +K+WD R TF H+ ++SV HH
Sbjct: 365 EGHKDWVAGVDF-HP-AGTCLASGGGDSAVKIWDFEKQRCVTTFTDHKQAIWSVRFHHLG 422
Query: 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM-----------MAYSADGTRLFS 558
+ + S ++D ++ W D P C M +A+ + L +
Sbjct: 423 EV--VASGSLDHTVRLW-----------DLPAGKCRMALRGHVDSVNDLAWQPFSSSLAT 469
Query: 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618
+ K + W+ G +TY G + G V F+ + + + +K WD
Sbjct: 470 ASSDKT----VSVWDARAGLCTQTYYGHQNSCNG-VSFNILGTQLASTDADGVVKLWDTR 524
Query: 619 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665
+ T++ G PA+ F++ G +LAV D +K + +DGV
Sbjct: 525 MTAEVATINT-GKHPANKSC-FDRSGQVLAVACDDGKVKAYSTTDGV 569
|
Chlamydomonas reinhardtii (taxid: 3055) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 915 | ||||||
| 255557965 | 1137 | conserved hypothetical protein [Ricinus | 0.953 | 0.766 | 0.909 | 0.0 | |
| 225454832 | 1135 | PREDICTED: protein TOPLESS [Vitis vinife | 0.951 | 0.767 | 0.868 | 0.0 | |
| 224128866 | 1099 | predicted protein [Populus trichocarpa] | 0.911 | 0.758 | 0.847 | 0.0 | |
| 115474917 | 1133 | Os08g0162100 [Oryza sativa Japonica Grou | 0.951 | 0.768 | 0.776 | 0.0 | |
| 357144889 | 1135 | PREDICTED: topless-related protein 1-lik | 0.948 | 0.764 | 0.778 | 0.0 | |
| 304555573 | 1141 | ramosa 1 enhancer locus 2 [Zea mays] gi| | 0.949 | 0.761 | 0.782 | 0.0 | |
| 37806272 | 1150 | WD-40 repeat protein-like [Oryza sativa | 0.951 | 0.757 | 0.760 | 0.0 | |
| 242078279 | 1136 | hypothetical protein SORBIDRAFT_07g00418 | 0.922 | 0.742 | 0.778 | 0.0 | |
| 168031165 | 1158 | predicted protein [Physcomitrella patens | 0.946 | 0.747 | 0.729 | 0.0 | |
| 168060004 | 1102 | predicted protein [Physcomitrella patens | 0.909 | 0.754 | 0.737 | 0.0 |
| >gi|255557965|ref|XP_002520011.1| conserved hypothetical protein [Ricinus communis] gi|223540775|gb|EEF42335.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1661 bits (4301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 794/873 (90%), Positives = 838/873 (95%), Gaps = 1/873 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEIL KDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILCKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKL+FP+FKSSRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLTFPAFKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNP-TSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGP 239
WQHQLCKNPRPNPDIKTLFTDHSC+P T+NGARPPPPTN+P+VGPIPKAG FPPIGAHGP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCSPSTANGARPPPPTNSPIVGPIPKAGAFPPIGAHGP 240
Query: 240 FQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQ 299
FQPVVSPSPGAIAGWMSSN+PSLPHP++AAGPPG VQPSSA FLKHPRTPTGMTG+DYQ
Sbjct: 241 FQPVVSPSPGAIAGWMSSNNPSLPHPAVAAGPPGLVQPSSAAAFLKHPRTPTGMTGIDYQ 300
Query: 300 SADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQ 359
SADS+HLMKR+RTGQSDEVSF+GVAHTPNVYS DDL KTV+R+L+QGSNVMSMDFHPQQQ
Sbjct: 301 SADSEHLMKRMRTGQSDEVSFSGVAHTPNVYSPDDLPKTVMRSLSQGSNVMSMDFHPQQQ 360
Query: 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419
TILLVGTNVGDISLWEVGSRERLAHKPFKVWD+SAASMPLQ ALLNDAAISVNRCVWGPD
Sbjct: 361 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDLSAASMPLQAALLNDAAISVNRCVWGPD 420
Query: 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479
GLMLGVAFSKHIV LY YNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI
Sbjct: 421 GLMLGVAFSKHIVQLYAYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 480
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539
KVWD VAGR+QYTFEGHEAPVYSVCPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDA
Sbjct: 481 KVWDAVAGRRQYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDSLGSRVDYDA 540
Query: 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599
PG WCTMMAYSADG+RLFSCGTSKEGESHLVEWNESEG IKRTYSGFRKRS GVVQFDTT
Sbjct: 541 PGLWCTMMAYSADGSRLFSCGTSKEGESHLVEWNESEGTIKRTYSGFRKRSSGVVQFDTT 600
Query: 600 RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659
R+RFLAAGDEFQIKFWDMDN NMLT VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL
Sbjct: 601 RSRFLAAGDEFQIKFWDMDNTNMLTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 660
Query: 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719
ANSDG+RL+RMLE RA+DKNR PSEPI+SKPL +NALGP +NVS+ +A LER DR PPA
Sbjct: 661 ANSDGLRLIRMLESRAIDKNRSPSEPINSKPLIVNALGPVANVSSGLATALERVDRMPPA 720
Query: 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779
V+ISSLGT+D SRLVDVKPR+++++DKIKSW+IPDI D S +KALRLPDSIA KVVRLI
Sbjct: 721 VAISSLGTMDSSRLVDVKPRISDELDKIKSWKIPDIVDQSHLKALRLPDSIATGKVVRLI 780
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
YTNSGL+LLALASNAVHKLWKWQR+ERNPSGKATA VAPQLWQPPSGTLMTNDI++SKP
Sbjct: 781 YTNSGLALLALASNAVHKLWKWQRSERNPSGKATAYVAPQLWQPPSGTLMTNDISDSKPA 840
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872
EESAACIALSKNDSYVMSASGGKVSLFNMMTFK
Sbjct: 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFK 873
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454832|ref|XP_002275116.1| PREDICTED: protein TOPLESS [Vitis vinifera] gi|297737353|emb|CBI26554.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1603 bits (4150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 757/872 (86%), Positives = 815/872 (93%), Gaps = 1/872 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFRQNEQLSKYGDTKSAR IML+ELKKLIEANPLFRDKL+FP+FK+SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARGIMLIELKKLIEANPLFRDKLTFPAFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPR NPDIKTLFTDH+C PT NGARPPPPTNNPLVGPIPKAG FPPIGAH PF
Sbjct: 181 WQHQLCKNPRSNPDIKTLFTDHACTPT-NGARPPPPTNNPLVGPIPKAGAFPPIGAHNPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVVSPSPGAIAGWMSS +PSLPH ++AAGPP VQPS+A FLKH RTPTG+TGMDYQS
Sbjct: 240 QPVVSPSPGAIAGWMSSTNPSLPHAAVAAGPPSLVQPSTAAAFLKHQRTPTGVTGMDYQS 299
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
DS+HLMKRIRTGQSDEVSF+GVAH PNVYSQDDL K+VVRT+ QGSNVMSMDFHPQQQT
Sbjct: 300 GDSEHLMKRIRTGQSDEVSFSGVAHAPNVYSQDDLPKSVVRTITQGSNVMSMDFHPQQQT 359
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
+LLVGTNVGDISLWEVGSRERLAHKPFKVWDISA SMPLQ ALL DA ISVNRCVWGPDG
Sbjct: 360 VLLVGTNVGDISLWEVGSRERLAHKPFKVWDISACSMPLQTALLKDATISVNRCVWGPDG 419
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
L+LGVAFSKHIV +YTYNPTGELRQHLEIDAH+GGVND+AFAHPNKQLCIVTCGDDK IK
Sbjct: 420 LILGVAFSKHIVQIYTYNPTGELRQHLEIDAHIGGVNDVAFAHPNKQLCIVTCGDDKTIK 479
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD GR+ YTFEGHEAPVYSVCPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 480 VWDAQTGRRLYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 539
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCTMMAYSADGTRLFSCGTSK+GESHLVEWNESEGAIKRTY GFRKRSLGVVQFDTTR
Sbjct: 540 GHWCTMMAYSADGTRLFSCGTSKDGESHLVEWNESEGAIKRTYLGFRKRSLGVVQFDTTR 599
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
NRFLAAGDEFQIKFWDMDN N+LT V+A+GGLPASPRLRFNKEGSLLAVTT+DNGIKILA
Sbjct: 600 NRFLAAGDEFQIKFWDMDNTNILTAVEAEGGLPASPRLRFNKEGSLLAVTTNDNGIKILA 659
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG+RL RMLE R M+ +R PSEPI+SKPL +NALGPA+NVSAA++P+LER DR PAV
Sbjct: 660 NNDGLRLTRMLESRPMEGHRGPSEPINSKPLIVNALGPAANVSAAMSPSLERSDRIQPAV 719
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIY 780
SI++L T+D SRLVDVKP++++D++KIKSW+IPDI D SQ+KALRLPD + KVVRLIY
Sbjct: 720 SINNLATMDSSRLVDVKPKISDDLEKIKSWKIPDIVDQSQLKALRLPDPVTTGKVVRLIY 779
Query: 781 TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 840
TNSGL+LLAL SNAVHKLWKWQR+ERNP GK+TA V PQLWQP +GTLMTND ++ P E
Sbjct: 780 TNSGLALLALISNAVHKLWKWQRSERNPLGKSTAYVVPQLWQPANGTLMTNDTGDNNPPE 839
Query: 841 ESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872
ESAACIALSKNDSYVMSASGGKVSLFNMMTFK
Sbjct: 840 ESAACIALSKNDSYVMSASGGKVSLFNMMTFK 871
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128866|ref|XP_002328986.1| predicted protein [Populus trichocarpa] gi|222839220|gb|EEE77571.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1535 bits (3974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 740/873 (84%), Positives = 786/873 (90%), Gaps = 39/873 (4%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDE+ERYLCGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEIERYLCGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKL+FP FKSSRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLTFPPFKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTS-NGARPPPPTNNPLVGPIPKAGQFPPIGAHGP 239
WQHQLCKNPR NPDIKTLF DHSC PT+ NGA PPPP+N PLVGPIPKAG FPPIGAHGP
Sbjct: 181 WQHQLCKNPRSNPDIKTLFIDHSCTPTTANGAHPPPPSNTPLVGPIPKAGAFPPIGAHGP 240
Query: 240 FQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQ 299
FQPVVSP+PGAIAGWMS+N+PSLPHP++AAGPP VQPSSA FLKHPRTPTGMTGM+YQ
Sbjct: 241 FQPVVSPTPGAIAGWMSANNPSLPHPAVAAGPPTLVQPSSAAAFLKHPRTPTGMTGMNYQ 300
Query: 300 SADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQ 359
SADS+HLMKR+R GQS+EVSF+G+AHTPN+YSQDDL KTVVRTLNQGSNVMSMDFHPQ Q
Sbjct: 301 SADSEHLMKRMRPGQSEEVSFSGIAHTPNIYSQDDLPKTVVRTLNQGSNVMSMDFHPQHQ 360
Query: 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419
TILLVGTNVGDISLWEVGSRERLAHKPFKVWD+SA+SMPLQ ALLNDAAISVNRCVWGPD
Sbjct: 361 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDLSASSMPLQTALLNDAAISVNRCVWGPD 420
Query: 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479
GLMLGVAFSKHIV +YTYNPTGE RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI
Sbjct: 421 GLMLGVAFSKHIVQIYTYNPTGEPRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 480
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539
KVWD AG +QY FEGHEAPVYS+CPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDA
Sbjct: 481 KVWDAGAGGRQYIFEGHEAPVYSLCPHYKENIQFIFSTAIDGKIKAWLYDSLGSRVDYDA 540
Query: 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599
PG WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG+IKRTY GFRKRSL VVQFDTT
Sbjct: 541 PGLWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGSIKRTYLGFRKRSLDVVQFDTT 600
Query: 600 RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659
R+ FLAAGDEFQIKFWDMDN NMLT VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL
Sbjct: 601 RSHFLAAGDEFQIKFWDMDNTNMLTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 660
Query: 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719
A+SDG+RL+RMLE RA+DK+R PSEPI+SKPL +NALG +NVS+ +A +LER DR PA
Sbjct: 661 ASSDGLRLIRMLESRAIDKSRSPSEPINSKPLIVNALGSVANVSSGLASSLERSDRIQPA 720
Query: 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779
VSI +LGT+D SRLVDVKPR+++D DK+KSW+ DI D SQ+KALRLPDSI A
Sbjct: 721 VSIGNLGTMDNSRLVDVKPRISDDTDKLKSWK-SDIVDSSQLKALRLPDSIVA------- 772
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
GKATA+ APQLWQPPSGT MTNDINESKP
Sbjct: 773 ------------------------------GKATASNAPQLWQPPSGTPMTNDINESKPA 802
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872
EESAACIALSKNDSYVMSASGGKVSLFNMMTFK
Sbjct: 803 EESAACIALSKNDSYVMSASGGKVSLFNMMTFK 835
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115474917|ref|NP_001061055.1| Os08g0162100 [Oryza sativa Japonica Group] gi|113623024|dbj|BAF22969.1| Os08g0162100 [Oryza sativa Japonica Group] gi|125560238|gb|EAZ05686.1| hypothetical protein OsI_27917 [Oryza sativa Indica Group] gi|371501278|dbj|BAL44266.1| ASP1 protein [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1444 bits (3737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 678/873 (77%), Positives = 763/873 (87%), Gaps = 2/873 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQES F+FNMKHFED VQ GEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKVSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PLVGPIPK+ FPP+GAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLVGPIPKSAAFPPMGAHAPF 240
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVVSPSP AIAGWM++ +PSLPH ++A GPPG VQP + FLKHPRTPT +DYQS
Sbjct: 241 QPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQPPNTAAFLKHPRTPTSAPAIDYQS 300
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
ADS+HLMKR+R GQ DEVSF+G +H N+Y+QDDL K VVR LNQGSNVMS+DFHP QQT
Sbjct: 301 ADSEHLMKRMRVGQPDEVSFSGASHPANIYTQDDLPKQVVRNLNQGSNVMSLDFHPVQQT 360
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
ILLVGTNVGDI +WEVGSRER+AHK FKVWDIS+ ++PLQ AL+ DAAISVNRC+W PDG
Sbjct: 361 ILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAALMKDAAISVNRCLWSPDG 420
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+LGVAFSKHIV Y + GELRQ EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IK
Sbjct: 421 SILGVAFSKHIVQTYAFVLNGELRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIK 480
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD G+KQYTFEGHEAPVYSVCPH+KESIQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 481 VWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 540
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCT MAYSADGTRLFSCGTSK+G+SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTR
Sbjct: 541 GHWCTTMAYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTR 600
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
NRFLAAGDEF +KFWDMDN N+LTT D DGGLPASPRLRFN+EGSLLAVT ++NGIKILA
Sbjct: 601 NRFLAAGDEFVVKFWDMDNTNILTTTDCDGGLPASPRLRFNREGSLLAVTANENGIKILA 660
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG RLLRMLE RA + +R P + I++KP +N LG SNVS+ +A ERPDR P V
Sbjct: 661 NTDGQRLLRMLESRAYEGSRGPPQQINTKPPIVNTLGSVSNVSSPMAVNSERPDRALPTV 720
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA-ASKVVRLI 779
S+S L +D SR DVKPR+ ++ +K+K+W++ DI D ++ALR+PD+ A +SKVVRL+
Sbjct: 721 SMSGLAPMDVSRTPDVKPRITDESEKVKTWKLADIGDSGHLRALRMPDTSATSSKVVRLL 780
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
YTN+G++LLAL SNAVHKLWKWQRT+RNP+GK+TA+ PQ+WQP +G LM ND ++ P
Sbjct: 781 YTNNGVALLALGSNAVHKLWKWQRTDRNPNGKSTASFTPQMWQPANGILMANDTSDGNP- 839
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872
EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFK
Sbjct: 840 EEATACIALSKNDSYVMSASGGKVSLFNMMTFK 872
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357144889|ref|XP_003573449.1| PREDICTED: topless-related protein 1-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 1437 bits (3721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 680/873 (77%), Positives = 766/873 (87%), Gaps = 5/873 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGF+FNMKHFED VQ GEWDEVERYL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMKHFEDMVQGGEWDEVERYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
LDNFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK+SRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PL GPIPK+ FPP+GAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLAGPIPKSAGFPPMGAHAPF 240
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVV+P+ AIAGWM++ +PSLPH ++A GP G VQP + FLKHPRTPT G+DYQS
Sbjct: 241 QPVVTPN--AIAGWMTNANPSLPHAAVAQGPSGLVQPPNTAAFLKHPRTPTSAPGIDYQS 298
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
ADS+HLMKR+R GQ DEVSF+G +H PN YSQ+DL K VVRTLNQGSNVMS+DFHP QQT
Sbjct: 299 ADSEHLMKRMRVGQPDEVSFSGASHPPNAYSQEDLPKQVVRTLNQGSNVMSLDFHPVQQT 358
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
ILLVGTNVGDI +WEVGSRER+AHK FKVWDIS+ ++PLQ AL+ DAAISVNRC+W PDG
Sbjct: 359 ILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAALMKDAAISVNRCLWSPDG 418
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+LGVAFSKHIV YT+ P GELRQ EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IK
Sbjct: 419 NILGVAFSKHIVQTYTFVPNGELRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIK 478
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD G+KQYTFEGHEAPVYSVCPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 479 VWDAQTGQKQYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 538
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCT M+YSADGTRLFSCGTSK+G+SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTR
Sbjct: 539 GHWCTTMSYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTR 598
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
N FLAAGDEF +KFWDMDN N+LTT + DGGLPASPRLRFN+EGSLLAVT +DNGIKILA
Sbjct: 599 NHFLAAGDEFVVKFWDMDNTNILTTAECDGGLPASPRLRFNREGSLLAVTANDNGIKILA 658
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG RLLRMLE RA + +R P + I++KP IN LG ASNVS+ IA ERPDR PAV
Sbjct: 659 NTDGQRLLRMLESRAFEGSRGPQQ-INTKPPLINTLGSASNVSSPIAVNSERPDRMLPAV 717
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA-ASKVVRLI 779
S+S L +D SR DVKPR+ ++ +K+K+W++ DI D I+A R PD+ + SKVVRL+
Sbjct: 718 SMSGLAPMDVSRTQDVKPRITDEAEKMKTWKLSDIVDSGHIRARRCPDTASNPSKVVRLL 777
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
YTN+G++LL+L SNA HKLWKWQR++RNP+GK+TA+++P LWQPP+G LMTND ++ P
Sbjct: 778 YTNNGIALLSLCSNAGHKLWKWQRSDRNPTGKSTASISPHLWQPPNGILMTNDTSDGNP- 836
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872
EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFK
Sbjct: 837 EEATACIALSKNDSYVMSASGGKVSLFNMMTFK 869
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|304555573|ref|NP_001167872.2| ramosa 1 enhancer locus 2 [Zea mays] gi|303387473|gb|ADM15670.1| ramosa 1 enhancer locus 2 [Zea mays] gi|303387475|gb|ADM15671.1| ramosa 1 enhancer locus 2 [Zea mays] gi|413917313|gb|AFW57245.1| ramosa1 enhancer locus2 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 1435 bits (3715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 683/873 (78%), Positives = 765/873 (87%), Gaps = 4/873 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGF+FNMKHFED VQ GEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK+SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLLELKKLIEANPLFRDKLNFPPFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PL G IPK+ FPP+GAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPL-GSIPKSAGFPPMGAHAPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVVSPSP AIAGWM++ +PSLPH ++A GPPG VQ + FLKHPRTPT G+DYQS
Sbjct: 240 QPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQAPNTAAFLKHPRTPTSAPGIDYQS 299
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
ADS+HLMKR+R GQ DEVSF+G +H N+Y+Q+DL K V RTLNQGSNVMS+DFHP QQT
Sbjct: 300 ADSEHLMKRMRVGQPDEVSFSGASHPANMYTQEDLPKQVSRTLNQGSNVMSLDFHPVQQT 359
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
ILLVGTNVGDI++WEVGSRER+AHK FKVWDI + ++PLQ +L+ DAA+SVNRC+W PDG
Sbjct: 360 ILLVGTNVGDIAVWEVGSRERIAHKTFKVWDIGSCTLPLQASLMKDAAVSVNRCLWSPDG 419
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+LGVAFSKHIV YT+ P G+LRQ EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IK
Sbjct: 420 TILGVAFSKHIVQTYTFVPNGDLRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIK 479
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD G+KQYTFEGHEAPVYSVCPH+KESIQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 480 VWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 539
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCT MAYSADGTRLFSCGTSKEG+SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTR
Sbjct: 540 GHWCTTMAYSADGTRLFSCGTSKEGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTR 599
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
NRFLAAGDEF +KFWDMDN N+LTT D DGGLPASPRLRFN+EGSLLAVTTSDNGIKILA
Sbjct: 600 NRFLAAGDEFLVKFWDMDNNNILTTTDCDGGLPASPRLRFNREGSLLAVTTSDNGIKILA 659
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG RLLRMLE RA + +R P + I++KP I ALGP SNVS+ IA ERPDR PAV
Sbjct: 660 NTDGQRLLRMLESRAFEGSRGPPQQINTKP-PIVALGPVSNVSSPIAVNAERPDRILPAV 718
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDS-IAASKVVRLI 779
S S L +D SR DVKPR+ ++ +K+K+W++ DI D ++AL L D+ SK+VRL+
Sbjct: 719 STSGLAPMDASRTPDVKPRITDESEKVKTWKLADIVDNGHLRALHLTDTDTNPSKIVRLL 778
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
YTN+G++LLAL SNAVHKLWKWQR++RNPSGK+TA+VAP LWQP +G LMTND N+ P
Sbjct: 779 YTNNGVALLALGSNAVHKLWKWQRSDRNPSGKSTASVAPHLWQPANGILMTNDTNDGNP- 837
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872
EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFK
Sbjct: 838 EEATACIALSKNDSYVMSASGGKVSLFNMMTFK 870
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|37806272|dbj|BAC99788.1| WD-40 repeat protein-like [Oryza sativa Japonica Group] gi|125602281|gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1429 bits (3700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 677/890 (76%), Positives = 762/890 (85%), Gaps = 19/890 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQES F+FNMKHFED VQ GEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQS-- 178
L+NFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK SRLRTLINQ
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKVSRLRTLINQRDV 180
Query: 179 ---------------LNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVG 223
LNWQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PLVG
Sbjct: 181 ICMNNNVNIQIGNAPLNWQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLVG 240
Query: 224 PIPKAGQFPPIGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGF 283
PIPK+ FPP+GAH PFQPVVSPSP AIAGWM++ +PSLPH ++A GPPG VQP + F
Sbjct: 241 PIPKSAAFPPMGAHAPFQPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQPPNTAAF 300
Query: 284 LKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTL 343
LKHPRTPT +DYQSADS+HLMKR+R GQ DEVSF+G +H N+Y+QDDL K VVR L
Sbjct: 301 LKHPRTPTSAPAIDYQSADSEHLMKRMRVGQPDEVSFSGASHPANIYTQDDLPKQVVRNL 360
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
NQGSNVMS+DFHP QQTILLVGTNVGDI +WEVGSRER+AHK FKVWDIS+ ++PLQ AL
Sbjct: 361 NQGSNVMSLDFHPVQQTILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAAL 420
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
+ DAAISVNRC+W PDG +LGVAFSKHIV Y + GELRQ EIDAH+GGVNDIAF+H
Sbjct: 421 MKDAAISVNRCLWSPDGSILGVAFSKHIVQTYAFVLNGELRQQAEIDAHIGGVNDIAFSH 480
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523
PNK L I+TCGDDK+IKVWD G+KQYTFEGHEAPVYSVCPH+KESIQFIFSTAIDGKI
Sbjct: 481 PNKTLSIITCGDDKLIKVWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKI 540
Query: 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583
KAWLYD LGSRVDYDAPG+WCT MAYSADGTRLFSCGTSK+G+SHLVEWNE+EGAIKRTY
Sbjct: 541 KAWLYDCLGSRVDYDAPGHWCTTMAYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTY 600
Query: 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643
+GFRKRSLGVVQFDTTRNRFLAAGDEF +KFWDMDN N+LTT D DGGLPASPRLRFN+E
Sbjct: 601 NGFRKRSLGVVQFDTTRNRFLAAGDEFVVKFWDMDNTNILTTTDCDGGLPASPRLRFNRE 660
Query: 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703
GSLLAVT ++NGIKILAN+DG RLLRMLE RA + +R P + I++KP +N LG SNVS
Sbjct: 661 GSLLAVTANENGIKILANTDGQRLLRMLESRAYEGSRGPPQQINTKPPIVNTLGSVSNVS 720
Query: 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKA 763
+ +A ERPDR P VS+S L +D SR DVKPR+ ++ +K+K+W++ DI D ++A
Sbjct: 721 SPMAVNSERPDRALPTVSMSGLAPMDVSRTPDVKPRITDESEKVKTWKLADIGDSGHLRA 780
Query: 764 LRLPDSIA-ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 822
LR+PD+ A +SKVVRL+YTN+G++LLAL SNAVHKLWKWQRT+RNP+GK+TA+ PQ+WQ
Sbjct: 781 LRMPDTSATSSKVVRLLYTNNGVALLALGSNAVHKLWKWQRTDRNPNGKSTASFTPQMWQ 840
Query: 823 PPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872
P +G LM ND ++ P EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFK
Sbjct: 841 PANGILMANDTSDGNP-EEATACIALSKNDSYVMSASGGKVSLFNMMTFK 889
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242078279|ref|XP_002443908.1| hypothetical protein SORBIDRAFT_07g004180 [Sorghum bicolor] gi|241940258|gb|EES13403.1| hypothetical protein SORBIDRAFT_07g004180 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 1387 bits (3589), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 659/847 (77%), Positives = 739/847 (87%), Gaps = 3/847 (0%)
Query: 27 KLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALD 86
+LEQESGF+FNMKHFED VQ GEWDEVE+YL GFTKVEDNRYSMKIFFEIRKQKYLEALD
Sbjct: 25 RLEQESGFYFNMKHFEDLVQGGEWDEVEKYLSGFTKVEDNRYSMKIFFEIRKQKYLEALD 84
Query: 87 RQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVE 146
R DRAKAVEILVKDLKVF+SFNEELFKEITQLLTL+NFRQNEQLSKYGDTKSARNIML+E
Sbjct: 85 RHDRAKAVEILVKDLKVFASFNEELFKEITQLLTLENFRQNEQLSKYGDTKSARNIMLLE 144
Query: 147 LKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNP 206
LKKLIEANPLFRDKL+FP FK+SRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSC
Sbjct: 145 LKKLIEANPLFRDKLNFPPFKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCAA 204
Query: 207 TSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHPS 266
+NGAR PPP N PLVG IPK+ FPP+GAH PFQPVVSPSP AIAGWM++ +PSLPH +
Sbjct: 205 PTNGARAPPPANGPLVGSIPKSAGFPPMGAHAPFQPVVSPSPNAIAGWMTNANPSLPHAA 264
Query: 267 MAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHT 326
+A GPPG VQ + FLKHPRTPT G+DYQSADS+HLMKR+R GQ DEVSF+G +H
Sbjct: 265 VAQGPPGLVQAPNTAAFLKHPRTPTSAPGIDYQSADSEHLMKRMRVGQPDEVSFSGASHP 324
Query: 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP 386
N+Y+Q+DL K V RTLNQGSNVMS+DFHP QQTILLVGTNVGDI++WEVGSRER+AHK
Sbjct: 325 ANMYTQEDLPKQVSRTLNQGSNVMSLDFHPVQQTILLVGTNVGDIAVWEVGSRERIAHKT 384
Query: 387 FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH 446
FKVWDI + ++PLQ +L+ DAAISVNRC+W PDG +LGVAFSKHIV YT+ P G+LRQ
Sbjct: 385 FKVWDIGSCTLPLQASLMKDAAISVNRCLWSPDGTILGVAFSKHIVQTYTFVPNGDLRQQ 444
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IKVWD G+KQYTFEGHEAPVYSVCPH
Sbjct: 445 AEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIKVWDAQTGQKQYTFEGHEAPVYSVCPH 504
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566
+KESIQFIFSTAIDGKIKAWLYD LGSRVDYDAPG+WCT MAYSADGTRLFSCGTSKEG+
Sbjct: 505 YKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAPGHWCTTMAYSADGTRLFSCGTSKEGD 564
Query: 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626
SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTRNRFLAAGDEF +KFWDMDN N+LTT
Sbjct: 565 SHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTRNRFLAAGDEFLVKFWDMDNNNILTTT 624
Query: 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686
D DGGLPASPRLRFN+EGSLLAVTTSDNGIKILAN+DG RLLRMLE RA + +R P + I
Sbjct: 625 DCDGGLPASPRLRFNREGSLLAVTTSDNGIKILANTDGQRLLRMLESRAFEGSRGPPQQI 684
Query: 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDK 746
++KP I ALGP SNVS+ IA ERPDR PAVS S L +D SR DVKPR+ ++ +K
Sbjct: 685 NTKP-PIVALGPVSNVSSPIAVNAERPDRILPAVSTSGLAPMDPSRTPDVKPRITDESEK 743
Query: 747 IKSWRIPDISDPSQIKALRLPDS-IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTE 805
+K+W++ DI D ++AL L D+ SKVVRL+YTN+G++LLAL SNAVHKLWKWQR +
Sbjct: 744 VKTWKLADIVDNGHLRALHLTDTDTNPSKVVRLLYTNNGIALLALGSNAVHKLWKWQRGD 803
Query: 806 RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSL 865
RNPSGK+TA+VAP LWQP +G LMTND N+ P EE+ ACIALSKNDSYVMSASGGKVSL
Sbjct: 804 RNPSGKSTASVAPHLWQPANGILMTNDTNDGNP-EEATACIALSKNDSYVMSASGGKVSL 862
Query: 866 FNMMTFK 872
FNMMTFK
Sbjct: 863 FNMMTFK 869
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168031165|ref|XP_001768092.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680730|gb|EDQ67164.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 1316 bits (3406), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 656/899 (72%), Positives = 738/899 (82%), Gaps = 33/899 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FEDQVQ+GEW+EVERYL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDQVQSGEWEEVERYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+QDRAKAV+ILVKDLKVFSSFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKQDRAKAVDILVKDLKVFSSFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FPS K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARNIMLLELKKLIEANPLFRDKLAFPSLKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DH+C P NGAR PPPTNNPLVG +PK G FPP+ H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCGP-PNGARAPPPTNNPLVGGLPKQGAFPPLTTHSPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTG-MDYQ 299
QP PS A+AGWM++ +P PH +A GP P ++ LK PRTP T +DYQ
Sbjct: 240 QPA-PPSASALAGWMANPNPPAPHAPVANGPAALTAPPNSATLLKRPRTPPSTTPTVDYQ 298
Query: 300 SADSDHLMKRIRTG-----QSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
SADS+HLMKR R G ++ V+ G +H N S DDL K V R+LNQGS VMSMDF
Sbjct: 299 SADSEHLMKRARPGIQSVDEAKTVNCVGPSHPQNNVSPDDLPKNVARSLNQGSCVMSMDF 358
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414
HP Q +ILLVGTNVGDI +WEVGSR+RLA + FKVWDI+AASMP+Q AL+ D A+SVNR
Sbjct: 359 HPIQLSILLVGTNVGDIGIWEVGSRDRLAQRTFKVWDITAASMPMQAALVKDPAVSVNRT 418
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
VW PDG +LGVAFSKHIVH+Y YN +LRQHLEIDAHVGGVND+AF+HPNKQLC++TCG
Sbjct: 419 VWNPDGTLLGVAFSKHIVHIYAYNGGSDLRQHLEIDAHVGGVNDLAFSHPNKQLCVITCG 478
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
DDK IKVWD GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD LGSR
Sbjct: 479 DDKTIKVWDAATGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDLLGSR 538
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 594
VDYDAPG+WCT MAYSADGTRLFSCGTSK+GES+LVEWNESEGAIKRTYSGFRKRS GVV
Sbjct: 539 VDYDAPGHWCTTMAYSADGTRLFSCGTSKDGESYLVEWNESEGAIKRTYSGFRKRSSGVV 598
Query: 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654
QFDTTRNRFLAAGDEF IKFWDMDN N+LTT+DA+GGLPASPRLRFNKEGSLLAVT+SDN
Sbjct: 599 QFDTTRNRFLAAGDEFLIKFWDMDNTNLLTTIDAEGGLPASPRLRFNKEGSLLAVTSSDN 658
Query: 655 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714
GIKILAN DG+++LR LE RA D NR P EP SKP N LG S +RP+
Sbjct: 659 GIKILANRDGMQMLRALEARAYDTNRAPPEPAVSKPPVGNTLGVVSTPGGGGG---DRPN 715
Query: 715 RGPPAVSISSLGTI--------------------DGSRLVDVKPRVAEDV-DKIKSWRIP 753
A S+ T+ +G R + KPR+ +D+ D+ KSW++
Sbjct: 716 SSSMAGSVMDGPTLNMGGSRVRPRDRVGNDHSGMEGGRTPETKPRIPDDIPDRSKSWKLT 775
Query: 754 DISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKAT 813
+I++ +Q + +RLPDS+ +KV RLIYTN+G++LLALASNAVHKLWKWQR ERN SGKAT
Sbjct: 776 EITEQNQCRTIRLPDSLPPNKVARLIYTNAGVALLALASNAVHKLWKWQRNERNVSGKAT 835
Query: 814 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872
A+V PQLWQP SG LMTNDI+E+ P E++ CIALSKNDSYVMSASGGKVSLFNMMTFK
Sbjct: 836 ASVTPQLWQPASGILMTNDISETNP-EDAVPCIALSKNDSYVMSASGGKVSLFNMMTFK 893
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168060004|ref|XP_001781989.1| predicted protein [Physcomitrella patens subsp. patens] gi|162666562|gb|EDQ53213.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 1298 bits (3360), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 647/877 (73%), Positives = 727/877 (82%), Gaps = 45/877 (5%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FEDQVQ GEW+EVERYL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDQVQGGEWEEVERYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+QDRAKAV+ILVKDLKVFSSFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKQDRAKAVDILVKDLKVFSSFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FPS K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARNIMLLELKKLIEANPLFRDKLAFPSLKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DH+C P NGAR PPP NNPLVG IPK G FP +G H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCGP-PNGARAPPPANNPLVGGIPKQGAFP-LGTHSPF 238
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTG-MDYQ 299
QP PS ++AGWM++ +P PH +A GP P ++ LK PRTP T +DYQ
Sbjct: 239 QPA-PPSASSLAGWMANPNPPAPHAPVANGPAALTAPPNSAALLKRPRTPPSTTPTVDYQ 297
Query: 300 SADSDHLMKRIRTG-QS-DEVSF-AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHP 356
SADS+HLMKR R G QS DEV G +H N S DDL K+V R+LNQGS VMSMDFHP
Sbjct: 298 SADSEHLMKRARPGVQSVDEVFVPGGTSHPQNNVSPDDLPKSVARSLNQGSCVMSMDFHP 357
Query: 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416
QQ++LLVGTNVGDI +WEVGSRE+LA + FKVWDI+AASMP+Q AL+ D A+SVNR VW
Sbjct: 358 IQQSVLLVGTNVGDIGIWEVGSREKLAQRTFKVWDITAASMPMQAALVKDPAVSVNRTVW 417
Query: 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476
PDG +LGVAFSKHIVH+Y YN +LRQHLEIDAHVGGVND+AF+HPNKQLC++TCGDD
Sbjct: 418 NPDGTLLGVAFSKHIVHIYAYNGGSDLRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDD 477
Query: 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536
K IKVWD GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD LGSRVD
Sbjct: 478 KTIKVWDAATGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDLLGSRVD 537
Query: 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596
YDAPG+WCT MAYSADGTRLFSCGTSK+GES+LVEWNESEGAIKRTYSGFRKRS GVVQF
Sbjct: 538 YDAPGHWCTTMAYSADGTRLFSCGTSKDGESYLVEWNESEGAIKRTYSGFRKRSAGVVQF 597
Query: 597 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656
DTTRNRFLAAGDEF IKFWDMDN N+LTT+DA+GGLPASPRLRFNK+GSLLAVTTSDNGI
Sbjct: 598 DTTRNRFLAAGDEFLIKFWDMDNTNLLTTIDAEGGLPASPRLRFNKDGSLLAVTTSDNGI 657
Query: 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716
KILAN DG+++LR LE RA D NR P EP SK
Sbjct: 658 KILANRDGMQMLRALEARAYDTNRVPPEPAVSK--------------------------- 690
Query: 717 PPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKV 775
++G R + KPR+ +++ D+ KSW++ +I++ +Q + +RLPDS+ +KV
Sbjct: 691 ---------SGMEGGRTPETKPRIPDEIPDRSKSWKLTEITEQNQCRTIRLPDSLPPNKV 741
Query: 776 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 835
RLIYTN+G++LLALASNAVHKLWKWQR ERN +GKATA+V+PQLWQP SG LMTNDI+E
Sbjct: 742 ARLIYTNAGVALLALASNAVHKLWKWQRNERNINGKATASVSPQLWQPASGILMTNDISE 801
Query: 836 SKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872
+ P E++ CIALSKNDSYVMSASGGKVSLFNMMTFK
Sbjct: 802 TNP-EDAVPCIALSKNDSYVMSASGGKVSLFNMMTFK 837
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 915 | ||||||
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.933 | 0.755 | 0.676 | 0.0 | |
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.761 | 0.622 | 0.706 | 1.50000009901e-317 | |
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.934 | 0.755 | 0.642 | 6.1e-300 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.185 | 0.229 | 0.391 | 4.9e-40 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.497 | 0.333 | 0.239 | 6.1e-16 | |
| ASPGD|ASPL0000006405 | 1878 | AN6960 [Emericella nidulans (t | 0.276 | 0.134 | 0.263 | 1.5e-12 | |
| ASPGD|ASPL0000038644 | 577 | AN10391 [Emericella nidulans ( | 0.264 | 0.419 | 0.274 | 4e-12 | |
| DICTYBASE|DDB_G0278353 | 530 | smu1 "suppressor of mec-8 and | 0.172 | 0.298 | 0.294 | 4.9e-12 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.215 | 0.588 | 0.259 | 1.4e-10 | |
| POMBASE|SPAC343.04c | 507 | SPAC343.04c "WD repeat protein | 0.139 | 0.252 | 0.257 | 9.5e-09 |
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3065 (1084.0 bits), Expect = 0., P = 0.
Identities = 599/885 (67%), Positives = 694/885 (78%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+ DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARXXXXXXXXXXXXXXKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC P NGAR KAG FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPP-NGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++AG PS LKHPRTP +DY S
Sbjct: 240 QPTASPVPTPLAGWMSSPS-SVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPS 297
Query: 301 ADSDHLMKRIRT-GQSDEV---------SFAGVAH--TPNVYSQDDLTKTVVRTLNQGSN 348
ADS+H+ KR R G SDEV SF+G AH +P + DDL KTV RTL+QGS+
Sbjct: 298 ADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDI+F+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C++TCGDDK IKVWD G K++TFEGHEAPVYSVCPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDYDAPG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +D DGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
V+ ++N IKI+ANSDG+RLL E + SE SSKP IN++ A+ AA A
Sbjct: 658 VSGNENVIKIMANSDGLRLLHTFENIS-------SE--SSKP-AINSIAAAA---AAAAT 704
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 767
+ DR VSI + D +VDVKP + E+ DK K W++ ++S+PSQ ++LRLP
Sbjct: 705 SAGHADRSANVVSIQGMNG-DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLP 763
Query: 768 DSIAASKVVRLIYTXXXXXXXXXXXXXVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 827
+++ +K+ RLI+T +H LWKWQR ERN +GKATA++ PQ WQP SG
Sbjct: 764 ENLRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGI 823
Query: 828 LMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872
LMTND+ E+ P EE+ C ALSKNDSYVMSASGGK+SLFNMMTFK
Sbjct: 824 LMTNDVAETNP-EEAVPCFALSKNDSYVMSASGGKISLFNMMTFK 867
|
|
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2622 (928.0 bits), Expect = 1.5e-317, Sum P(2) = 1.5e-317
Identities = 505/715 (70%), Positives = 577/715 (80%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARXXXXXXXXXXXXXXKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC N AR KA FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCR-LPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++ GP PS LKHPRTP + +DY S
Sbjct: 240 QPTPSPVPTPLAGWMSSPS-SVPHPAVSGGPIALGAPSIQAA-LKHPRTPPSNSAVDYPS 297
Query: 301 ADSDHLMKRIRT-GQSDEVS---------FAGVAHTPN--VYSQDDLTKTVVRTLNQGSN 348
DSDH+ KR R G SDEVS F G AH N + DDL KTV RTL+QGS+
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDIAF+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C+ TCGDDK IKVWD G K+YTFEGHEAPVYS+CPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDY+APG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +DADGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNR--CPSEPISSKPLTINALGPASN 701
V+ +DN IK++ANSDG+RLL +E + + ++ S P+ +P ++ ++ P N
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPASVVSI-PGMN 711
|
|
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2879 (1018.5 bits), Expect = 6.1e-300, P = 6.1e-300
Identities = 565/880 (64%), Positives = 685/880 (77%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+K+FE++ AGEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DRAKAVEIL KDLKVF++FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR+IM ELKKLIEANPLFR+KL+FPSFK+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARXXXXXXXXXXXXXXKAGQFPPIGAHG-P 239
WQHQLCKNPRPNPDIKTLF DHSC+P SNGAR + F P+G HG P
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSP-SNGARALTPVNLPVAAVA-RPSNFVPLGVHGGP 238
Query: 240 FQ--PVVSPSPGAIAGWMSSNSPSLPHPS-MAAGPPGFVQPSSAVGFLKHPRTPTGMTG- 295
FQ P +P+ A+AGWM++ +PS PS + A P +QPS V LKHPR P+ G
Sbjct: 239 FQSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQ-VNELKHPRAPSNSLGL 297
Query: 296 MDYQSADSDHLMKRIRTGQ-SDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
MDYQSAD + LMKR+R+ Q S+EV++ +H P S DDL + VV T+ QGS V+SMDF
Sbjct: 298 MDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPA--SLDDLPRNVVSTIRQGSVVISMDF 355
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414
HP T+L VG + G+++LWEVGSRE++ +PFK+W+++A S+ Q +++ + +ISV R
Sbjct: 356 HPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRV 415
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
W PDG +LGV+F+KH++H+Y Y + +LRQHLEIDAHVG VND+AFAHPNKQ+C+VTCG
Sbjct: 416 AWSPDGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCG 474
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
DDK+IKVWD+ +G+K +TFEGHEAPVYS+CPH KE+IQFIFSTA+DGKIKAWLYD +GSR
Sbjct: 475 DDKLIKVWDL-SGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSR 533
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 594
VDYDAPG WCT M YSADG+RLFSCGTSKEG+S LVEWNESEGA+KRTY GFRK+S GVV
Sbjct: 534 VDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVV 593
Query: 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654
QFDTTRNRFLA G++ QIKFW+MDN N+LT V+A+GGLP PRLRFNK+G+LLAVTT+DN
Sbjct: 594 QFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADN 653
Query: 655 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714
G KILAN+DG+R LR E R+ + ++ +S + ++ AS++S AI +E D
Sbjct: 654 GFKILANTDGLRTLRAFEARSFEASK------ASIDMKVSTSAMASSISPAIGK-IEHMD 706
Query: 715 RGPPAVSISSLGTIDG-SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI-AA 772
G PA I+ SR ++ KPR + VDK K + +I DP+Q + + +PDS +
Sbjct: 707 AGSPARPTPIPNGIEAMSRTME-KPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSV 765
Query: 773 SKVVRLIYTXXXXXXXXXXXXXVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND 832
SKV RL+YT V +LWKW R E+NP+GKATA+V PQ WQP SG LM ND
Sbjct: 766 SKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMAND 825
Query: 833 INESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872
+ E+ P E S CIALSKNDSYVMSA GGKVSLFNMMTFK
Sbjct: 826 VPEN-P-EGSVPCIALSKNDSYVMSACGGKVSLFNMMTFK 863
|
|
| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 320 (117.7 bits), Expect = 4.9e-40, Sum P(2) = 4.9e-40
Identities = 67/171 (39%), Positives = 101/171 (59%)
Query: 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGFTKVED 65
+ LVFLILQF DEE ++E++H LEQ+SG FF+ + + + G W + + YL FT E
Sbjct: 9 KNLVFLILQFFDEEGYEESLHLLEQDSGVFFDFSYLSNAILNGNWKDADDYLSAFTSPEA 68
Query: 66 NRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFR 125
N +S K+FF + K K+ EA DR ++AV+I KDL+ ++ F ++ +++ +D+ R
Sbjct: 69 NTFSRKMFFGLFKLKFSEAPDRSGGSEAVKIFSKDLRRIPVLKDDSFDDLVEVIAVDDMR 128
Query: 126 QNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLIN 176
E+ D R + V+L KL E+NP R KL FPS S L LI+
Sbjct: 129 IPEETCCV-DKAPGRAKLCVDLHKLAESNPSLRGKLDFPSLNKSALLALIS 178
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 239 (89.2 bits), Expect = 6.1e-16, P = 6.1e-16
Identities = 119/497 (23%), Positives = 203/497 (40%)
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
K+WD + + LQ L+ + +V + PDG +L + + L+ + TGEL Q
Sbjct: 775 KIWDPATGEL-LQT--LDGHSGTVESLAFSPDGKLLASGSYDNTIDLWD-SATGELLQTF 830
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507
E H + +AFA K+L + DD IK+WD+ G Q T + H V SV
Sbjct: 831 E--GHPHSIWSVAFAPDGKELA--SASDDSTIKIWDLATGELQQTLDSHSQSVRSVA--F 884
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567
+ + S+++D IK W + + W +A+S DG +L S G+ K +
Sbjct: 885 SPDGKLLASSSLDSTIKVWNPATGELQQSLEGRSGWVKSVAFSPDGKKLAS-GSEK---N 940
Query: 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627
+ WN + G + +T G +S+ V F + ++ + IK W+ + T
Sbjct: 941 TVKLWNPATGELLQTLEG-HSQSVRSVAFSPDGKQLASSSSDTTIKLWNSTTGELQQTFK 999
Query: 628 A-DGGLPASPRLRFNKEGSLLAVTTSDNGIKI--LANSDGVRLLRMLEGRAMDKNRCPSE 684
D + A + F+ +G L + DN IK+ LA S+ L + LE + +
Sbjct: 1000 GHDLWIRA---VAFSPDGKHLVSGSDDNTIKLWDLATSE---LQQSLEDHSRSVHAVAFS 1053
Query: 685 PISSKPLTINALGPA----SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 740
P K L ++L + + + TLE +G +V+ S G + S D ++
Sbjct: 1054 P-DDKQLASSSLDSTIKLWDSATGELQRTLEGHSQGVRSVTFSPDGKLLASNSYDGTIKL 1112
Query: 741 AEDVDKIKSWRIPDISDPSQIKALRLPDS--IAASKVVRLIYTXXXXXXXXXXXXXVHKL 798
+ + SD A PD +A+ I H
Sbjct: 1113 WNPLTGELQQTLTGRSDWVDSVAFS-PDGKQLASGYYDSTIKLWDSATGELLQTLEGHSD 1171
Query: 799 WKWQRTERNPSGKATANVA----PQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854
+ Q +P GK A+ + +LW P +G L+ SK E +A S +
Sbjct: 1172 -RIQSVVFSPDGKLLASGSYDQTAKLWDPATGELLQIFEGHSKWVES----VAFSPDGKL 1226
Query: 855 VMSASGGK-VSLFNMMT 870
+ S+S G+ + L++ +T
Sbjct: 1227 LASSSYGETIKLWDPVT 1243
|
|
| ASPGD|ASPL0000006405 AN6960 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 209 (78.6 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 73/277 (26%), Positives = 128/277 (46%)
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
K+WD S LQN +L VN + PD +L A V ++ + TG L++ L
Sbjct: 414 KIWDTRTGS--LQN-VLEGHDDCVNSVSFSPDSRLLASASDDRTVKIW-HAATGSLQRTL 469
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507
E H V + F+H ++ I + DD +K+WD Q E H+ V SV H
Sbjct: 470 E--GHNDWVRSVVFSHDSR--LIASASDDMTVKIWDTATVPLQNNLESHDNWVRSVVFSH 525
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEG 565
+ + S + D +K W D ++ G+ +++S D +RL + S +G
Sbjct: 526 DSRL--LASASDDMTVKIW--DTATGSLENTLEGHDDRVNSVSFSPD-SRLLA-SASDDG 579
Query: 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625
+ W + G ++ T+ G + ++ + F T N +A D+ +K WDM+ ++ T
Sbjct: 580 TVKI--WYAATGTVQHTFDGSGRVAISLA-FSHTSNLLASAMDDGTVKIWDMEIYSLRHT 636
Query: 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662
D D + R++F+K S+ ++ T+ I++ A S
Sbjct: 637 FDLDHEIQ---RIQFDK--SMSSLITNVGRIQLDARS 668
|
|
| ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 73/266 (27%), Positives = 121/266 (45%)
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
K+WD S LQ+ L + + V ++ D +L A S V ++ TG L QH
Sbjct: 321 KIWDTETGS--LQHTLEGHSDL-VRSVIFSHDSRLLASA-SDSTVKIWDTG-TGSL-QHT 374
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507
++ H V + F+H + QL + + DD +K+WD G Q+T EGH V SV H
Sbjct: 375 -LEGHRDWVRSVIFSH-DSQL-LASASDDSTVKIWDTGTGSLQHTLEGHRDWVRSVIFSH 431
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEG 565
Q + S + D +K W D + + G+ W + +S D +RL + S
Sbjct: 432 DS--QLLASASDDSTVKIW--DTGTGSLQHTLEGHRDWVRSVIFSHD-SRLLA---SASD 483
Query: 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625
+ + W+ +G+ K T G + V F +A ++ ++ WD++ ++ T
Sbjct: 484 DRTVRIWDTEKGSHKHTLEG-HSSLVTSVSFSHDSRLLASASNDQTVRIWDIEARSLQHT 542
Query: 626 VDADGGLPASPRLRFNKEGSL-LAVT 650
D D + A +RF+K SL + VT
Sbjct: 543 FDLDATIEA---MRFDKATSLWIQVT 565
|
|
| DICTYBASE|DDB_G0278353 smu1 "suppressor of mec-8 and unc-52-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 56/190 (29%), Positives = 88/190 (46%)
Query: 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM----KHFEDQVQAGEWDEVERYLCGF 60
S++++ LILQFL E ++ L++E+G N + F + V+ G WD V
Sbjct: 16 SQDVIKLILQFLKENSLGNSLTALQEETGINLNAVDSKETFLNDVKNGNWDSV------L 69
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
T V R S + ++ +Q +E L K E+ ++ N + + L
Sbjct: 70 TVVSTLRLSTTLLMDLYEQ-IVELL----HLKEYELCKYLIRKTEPLNYMKLNQQERYLK 124
Query: 121 LDNFRQNEQLS-----KYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLI 175
L+N Q E + KYG T R K+LIE L + ++ PS SRL +L+
Sbjct: 125 LENHLQREYIDLGDFYKYGITTEKRR------KQLIEQ--LNNEIITVPS---SRLLSLL 173
Query: 176 NQSLNWQ-HQ 184
+QSL+WQ HQ
Sbjct: 174 SQSLHWQKHQ 183
|
|
| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 179 (68.1 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 55/212 (25%), Positives = 106/212 (50%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
S++ + PDG L A + + ++ Y+ G+ + LE H G++DIA++ +K +
Sbjct: 48 SISSVKFSPDGKWLASASADKTIKIWGAYD--GKFERTLE--GHKEGISDIAWSQDSKLI 103
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C + DDK IK+WDV +G+ T +GH+ V+ V + + ++ I S + D ++ W
Sbjct: 104 C--SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV 159
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
+ A + T + ++ DGT + S G S +G + W+ + G + T S
Sbjct: 160 NTGECTKMISAHSDPVTGVHFNRDGTLVVS-G-SYDGTVRI--WDTTTGQLLNTISTEDG 215
Query: 589 RSLGVVQFDTTRNRFLAAGD-EFQIKFWDMDN 619
+ + V+F + +F+ AG + ++ W +N
Sbjct: 216 KEVSFVKF-SPNGKFVLAGTLDNTLRLWSYNN 246
|
|
| POMBASE|SPAC343.04c SPAC343.04c "WD repeat protein, human WDR26 family, ubiquitin ligase complex subunit (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 116 (45.9 bits), Expect = 9.5e-09, Sum P(3) = 9.5e-09
Identities = 35/136 (25%), Positives = 72/136 (52%)
Query: 7 ELVFLILQFLDEEKFKETVHKLEQESGFFF---NMKHFEDQVQAGEWDEVERYLCGFTKV 63
E++ L+LQFL++ + E++ LE+E+G ++K + V G+W E ++
Sbjct: 10 EVIHLLLQFLNDYGYDESLKALEKETGLVSETEDVKRLKQAVLQGDWITAEAAF-SIMQL 68
Query: 64 EDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDN 123
D + F ++KQ+ LE +A+ +L ++ + + FN+E + ++ +L +N
Sbjct: 69 RDESKRKEAQFLLQKQRCLELARSGAICEAIYVL-QNFES-TDFNKEKERLVSIILESNN 126
Query: 124 FRQNEQLSK--YGDTK 137
NE ++K YG+T+
Sbjct: 127 KSNNELITKNGYGNTR 142
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94AI7 | TPL_ARATH | No assigned EC number | 0.6949 | 0.9333 | 0.7550 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 915 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-23 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-12 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 8e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-07 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 4e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 | |
| pfam10607 | 144 | pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 6e-23
Identities = 61/231 (26%), Positives = 89/231 (38%), Gaps = 32/231 (13%)
Query: 336 TKTVVRTLNQ-GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISA 394
T VRTL S V S+ F P + IL + I +W+V + + L
Sbjct: 82 TGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCL------------ 128
Query: 395 ASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG 454
L VN + PDG + + + L+ TG+ + H G
Sbjct: 129 -------TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR-TGKCVA--TLTGHTG 178
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
VN +AF P+ + +++ D IK+WD+ G+ T GHE V SV +
Sbjct: 179 EVNSVAF-SPDGE-KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG--YLL 234
Query: 515 FSTAIDGKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADGTRLFSCGTSK 563
S + DG I+ W D G N T +A+S DG RL S
Sbjct: 235 ASGSEDGTIRVW--DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 2e-22
Identities = 66/296 (22%), Positives = 108/296 (36%), Gaps = 46/296 (15%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA----HKPFKVWDISAASMPLQNALL 404
V + F P + + + G I +W++ + E L H V D++A L
Sbjct: 12 VTCVAFSPDGKLLATGSGD-GTIKVWDLETGELLRTLKGHT-GPVRDVAA--SADGTYLA 67
Query: 405 ---NDAAISV-----NRCVW---GPDGLMLGVAFSKHI-----------VHLYTYNPTGE 442
+D I + CV G + VAFS + ++ TG+
Sbjct: 68 SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD-VETGK 126
Query: 443 LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502
+ H VN +AF P+ + + D IK+WD+ G+ T GH V S
Sbjct: 127 CLT--TLRGHTDWVNSVAF-SPDGTF-VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADGTRLFSCG 560
V + S++ DG IK L+D + G N +A+S DG L S
Sbjct: 183 VAFSPDGE--KLLSSSSDGTIK--LWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS 238
Query: 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616
+ + W+ G +T SG + + + R + + I+ WD
Sbjct: 239 ----EDGTIRVWDLRTGECVQTLSGHTNS-VTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 2e-20
Identities = 68/266 (25%), Positives = 109/266 (40%), Gaps = 19/266 (7%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V + PDG +L + ++ TGEL + L+ H G V D+A + L
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLE-TGELLRTLK--GHTGPVRDVAASADGTYL- 66
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+ DK I++WD+ G T GH + V SV I + S++ D IK W +
Sbjct: 67 -ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI--LSSSSRDKTIKVWDVE 123
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK- 588
+W +A+S DGT + S S++G L W+ G T +G
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASS--SQDGTIKL--WDLRTGKCVATLTGHTGE 179
Query: 589 -RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
S V F + L++ + IK WD+ L T+ S + F+ +G LL
Sbjct: 180 VNS---VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS--VAFSPDGYLL 234
Query: 648 AVTTSDNGIKILANSDGVRLLRMLEG 673
A + D I++ + ++ L G
Sbjct: 235 ASGSEDGTIRVW-DLRTGECVQTLSG 259
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.7 bits (213), Expect = 1e-17
Identities = 71/310 (22%), Positives = 126/310 (40%), Gaps = 27/310 (8%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
+ S+ F P + +LL G++ G I LW++ + E+L +L
Sbjct: 68 ITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIK-----------------SLEGLHD 109
Query: 409 ISVNRCVWG-PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 467
SV++ PDG + +A S + ++ + + ++ H V +AF P+ +
Sbjct: 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF-SPDGK 168
Query: 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527
L D IK+WD+ G+ T GH PV S+ + I S + DG I+ W
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL-LIASGSSDGTIRLWD 227
Query: 528 YDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586
G + G+ + ++S DG+ L S S +G L W+ +
Sbjct: 228 LST-GKLLRSTLSGHSDSVVSSFSPDGSLLASG--SSDGTIRL--WDLRSSSSLLRTLSG 282
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646
S+ V F + + ++ WD++ +L+++ G L F+ +GSL
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342
Query: 647 LAVTTSDNGI 656
L SD+G
Sbjct: 343 LVSGGSDDGT 352
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (185), Expect = 3e-14
Identities = 65/339 (19%), Positives = 123/339 (36%), Gaps = 43/339 (12%)
Query: 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA---- 383
++ K + +V S+ F P + + + G I LW++ + + L+
Sbjct: 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196
Query: 384 HKPF-----------------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
H ++WD+S L++ L + V+ + PDG
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRSTLSGHSDSVVS--SFSPDG 253
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+L S + L+ + L + L H V +AF P+ +L + D ++
Sbjct: 254 SLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVLSVAF-SPDGKLLA-SGSSDGTVR 309
Query: 481 VWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538
+WD+ G+ T +GHE PV S+ + + + DG I+ W +
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368
Query: 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598
+ +++S DG + S T + W+ S G++ R G R + F
Sbjct: 369 G-HSNVLSVSFSPDGRVVSSGSTDGT----VRLWDLSTGSLLRNLDGHTSRVT-SLDFSP 422
Query: 599 TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637
+ + I+ WD+ + DG + AS
Sbjct: 423 DGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKS 461
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (185), Expect = 3e-14
Identities = 63/276 (22%), Positives = 108/276 (39%), Gaps = 34/276 (12%)
Query: 315 SDEVSFAGVAHTPNVYSQDDLTKTVVRTL-NQGSNVMSMDFHPQQQTILLVGTNVGDISL 373
++ +G + + D T + TL V S+ F P ++ G++ G I L
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225
Query: 374 WEVGSRERLAH--------------------------KPFKVWDISAASMPLQNALLNDA 407
W++ + + L ++WD+ ++S L+ + +
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285
Query: 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 467
SV + PDG +L S V L+ TG+L L + H G V+ ++F P+
Sbjct: 286 --SVLSVAFSPDGKLLASGSSDGTVRLWDLE-TGKLLSSLTLKGHEGPVSSLSF-SPDGS 341
Query: 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527
L + DD I++WD+ G+ T EGH V SV + ST DG ++ W
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGST--DGTVRLWD 398
Query: 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563
+ D + T + +S DG L S +
Sbjct: 399 LSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN 434
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.3 bits (168), Expect = 4e-12
Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 11/236 (4%)
Query: 442 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEG-HEAP 499
L + H + IAF P+ +L +++ D IK+WD+ G K + EG H++
Sbjct: 54 PDLSSLLLRGHEDSITSIAF-SPDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSS 111
Query: 500 VYSVCPHHKESIQFI-FSTAIDGKIKAW-LYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557
V + + + S+++DG +K W L + T +A+S DG L
Sbjct: 112 VSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLA 171
Query: 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617
S + + W+ G T +G + + + I+ WD+
Sbjct: 172 SGSSLD---GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228
Query: 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
+L + + G S F+ +GSLLA +SD I++ LLR L G
Sbjct: 229 STGKLLRSTLS--GHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282
|
Length = 466 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 8e-12
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 34 FFFNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAK 92
F K + + G+WDE +L R S K+ FE+RKQK+LE + + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 16/185 (8%)
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW---LYDYLGSRVDYDAPGNWCTMMA 548
T +GH V V + + + + DG IK W + L + + P A
Sbjct: 4 TLKGHTGGVTCVAFS--PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDV---A 58
Query: 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608
SADGT L S + K + W+ G RT +G V F ++
Sbjct: 59 ASADGTYLASGSSDKT----IRLWDLETGECVRTLTGHTSYVSS-VAFSPDGRILSSSSR 113
Query: 609 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668
+ IK WD++ LTT+ S + F+ +G+ +A ++ D IK+ + + +
Sbjct: 114 DKTIKVWDVETGKCLTTLRGHTDWVNS--VAFSPDGTFVASSSQDGTIKL-WDLRTGKCV 170
Query: 669 RMLEG 673
L G
Sbjct: 171 ATLTG 175
|
Length = 289 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 4e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 LSRELVFLILQFLDEEKFKETVHKLEQESGF 34
EL LIL++L ++ET L++ESG
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ H G V +AF P+ L + + DD ++VWD
Sbjct: 6 TLKGHTGPVTSVAF-SPDGNL-LASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ H G V +AF P+ + + + DD IK+WD
Sbjct: 7 TLKGHTGPVTSVAF-SPDGKY-LASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.002
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
G+ T +GH PV SV + S + DG ++ W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDG--NLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.003
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 71 KIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQL 130
+ FE+R Q+++E + +A+E ++L F FNE+ KEI +L+ L F
Sbjct: 37 NLEFELRLQQFIELIREGKILEALEYARENLAPF--FNEQHLKEIQKLMGLLAFPDPTDS 94
Query: 131 SKYGD 135
S Y
Sbjct: 95 SPYKS 99
|
RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 915 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.98 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.98 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.98 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.98 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.98 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.95 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.92 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.91 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.89 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.88 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.88 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.87 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.87 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.86 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.86 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.86 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.85 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.85 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.85 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.85 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.84 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.84 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.83 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.81 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.8 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.8 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.79 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.78 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.77 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.77 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.75 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.74 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.74 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.74 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.73 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.73 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.73 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.72 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.72 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.72 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.71 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.7 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.69 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.68 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.68 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.67 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.66 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.65 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.65 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.64 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.63 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.62 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.62 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.61 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.59 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.59 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.59 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.59 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.58 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.58 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.57 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.57 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.57 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.56 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.55 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.54 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.54 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.53 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.52 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.52 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.52 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.52 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.51 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.51 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.49 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.49 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.48 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.46 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.45 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.44 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.42 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.41 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.41 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.4 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.39 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.39 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.39 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.39 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.39 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.39 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.39 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.39 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.36 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.35 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.33 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.32 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.32 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.29 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.29 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.28 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.27 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.26 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.26 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.25 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.22 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.21 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.2 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.18 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.14 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.14 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.11 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.09 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.05 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.04 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.03 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.02 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.98 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.97 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.96 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.92 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.89 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.83 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.81 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.79 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.77 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.74 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.73 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.71 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.71 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.7 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.68 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.67 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.67 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.67 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.66 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.61 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.6 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.57 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.57 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.57 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.56 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.56 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.55 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.53 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.52 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.52 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.49 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.46 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.44 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.4 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.4 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.35 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.32 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.3 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.28 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.28 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.27 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.25 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.25 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.22 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.21 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.2 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.19 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.18 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.18 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.17 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.17 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.15 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.14 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.11 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.04 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.03 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.01 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.0 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.0 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.99 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 97.97 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.96 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.95 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.94 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.92 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.91 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.83 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.82 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.79 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.77 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.75 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.75 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.75 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.73 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.7 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.66 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.65 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.65 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.59 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.53 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.52 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.47 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.45 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.41 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.41 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.4 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.38 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.34 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.33 | |
| cd08044 | 133 | TAF5_NTD2 TAF5_NTD2 is the second conserved N-term | 97.27 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.25 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.16 | |
| PF04494 | 142 | TFIID_90kDa: WD40 associated region in TFIID subun | 97.14 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.11 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.1 | |
| PRK10115 | 686 | protease 2; Provisional | 97.09 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.07 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.02 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.0 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.89 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.76 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.76 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.7 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.67 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.57 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.56 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.54 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.52 | |
| PRK10115 | 686 | protease 2; Provisional | 96.46 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.45 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.45 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.43 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.28 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.24 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.19 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.1 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.01 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.91 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.88 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.79 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.76 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.75 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.67 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.48 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.47 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.43 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.42 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.29 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.28 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.15 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.08 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.8 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 94.48 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.41 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 93.99 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.98 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.63 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.34 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.14 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.12 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.05 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 93.0 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.66 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 92.63 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 92.4 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.23 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.92 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 91.91 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 91.88 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 91.32 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 91.28 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.06 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 91.04 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 90.9 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 90.87 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.25 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.0 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 89.99 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 89.86 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 89.85 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 89.68 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 89.63 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 89.63 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 89.46 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 88.63 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 88.46 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 88.25 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 88.05 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 88.02 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 87.91 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 87.48 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 87.45 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 87.35 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 87.16 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 87.12 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 86.85 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 86.79 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 86.23 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 86.05 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 85.8 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 85.63 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 85.42 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 85.3 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 85.27 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 84.54 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 84.5 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 84.31 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 83.89 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 83.75 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 83.11 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 82.94 | |
| PLN02193 | 470 | nitrile-specifier protein | 82.72 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 82.66 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 81.93 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 81.89 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 80.89 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-68 Score=518.00 Aligned_cols=491 Identities=21% Similarity=0.297 Sum_probs=405.4
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhhCCCCc---hHHHHHHHHcCCHHHHHHHHcCCCcccccccchhHHHHHHHHHH
Q 002494 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKY 81 (915)
Q Consensus 5 ~~ev~rli~q~L~~~g~~~s~~~L~~ESg~~~~---~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (915)
+-|++||+.|+|..+||.+|+.+||.|||+.++ ++.|.+.++.|+|++++..+..+ .++++...+++.|++.+|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i-~~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRI-SFEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhc-cCcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999886 89999999999999999999988 45555557789999999999
Q ss_pred HHHHhccCHHHHHHHHHHhcccccccCHHHHHHHHHhhcccccc-ccccccccCCchHHHHHHHHHHHHHhhcCcCcccc
Q 002494 82 LEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFR-QNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDK 160 (915)
Q Consensus 82 lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~~~ 160 (915)
||++..|...+|+.+||+...++. ++.+++++|+.-+..++.. .++.. .-......|..|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~-~~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEEN-TTAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccc-hhhhhchhHHHHHHHHHhhCCHhhc----
Confidence 999999999999999999988876 5899999998877765433 23321 1112457799999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccceeeecccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 002494 161 LSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240 (915)
Q Consensus 161 ~~~~~~p~~rL~~ll~qal~~q~~~~~~~~~~~~~~sl~~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (915)
+|++||+.||+||+++|+.+|+|||+ .+..|||.||.|.+ .+ +| +
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~------------~q----ip-------------~ 214 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGR------------LQ----IP-------------S 214 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCc------------cc----CC-------------c
Confidence 99999999999999999999999995 55589999999999 22 23 2
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCcccCCCCCccCCCCccccccCCCCCCCccceeecCCCcchhhhccccCCCcceee
Q 002494 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSF 320 (915)
Q Consensus 241 ~~~~~~~~~~~~~w~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (915)
+..+....
T Consensus 215 qt~qil~~------------------------------------------------------------------------ 222 (519)
T KOG0293|consen 215 QTWQILQD------------------------------------------------------------------------ 222 (519)
T ss_pred hhhhhHhh------------------------------------------------------------------------
Confidence 22222333
Q ss_pred cCCCCCceeeecCCCcccEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCccccc
Q 002494 321 AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQ 400 (915)
Q Consensus 321 s~~g~~~~~~~~d~~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (915)
|.++|+-+.||++|+ +||+++.|.+..+|++.....+. .
T Consensus 223 ------------------------htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~k----------------l 261 (519)
T KOG0293|consen 223 ------------------------HTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFK----------------L 261 (519)
T ss_pred ------------------------CCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCccee----------------e
Confidence 555666666778887 48999999999999987654321 1
Q ss_pred ccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEE
Q 002494 401 NALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (915)
Q Consensus 401 ~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~ 480 (915)
...+.+|..+|..+.||||.++|++|+.+..+++||+.+|....... .+|...+.+++|.|||. .+++|+.|+++.
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTII 337 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEE
Confidence 22367899999999999999999999999999999999987765321 23567899999999999 699999999999
Q ss_pred EEEcCCCeeEEEecCCC-CCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEE
Q 002494 481 VWDVVAGRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (915)
Q Consensus 481 vwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~ 559 (915)
.||+. |.....+++-. ..|.++++++ ||+++++.+.|..|++++..+....... ....+|++++.|.||+++++.
T Consensus 338 ~wdlD-gn~~~~W~gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 338 MWDLD-GNILGNWEGVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVN 413 (519)
T ss_pred EecCC-cchhhcccccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEE
Confidence 99964 55566666533 5688999977 4589999999999999998765554332 345689999999999999887
Q ss_pred eecCCCCceEEEEECCCCeeEEEecCCCCC-ceEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcce
Q 002494 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKR-SLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (915)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (915)
-. +..+++||++..+.++++.||... .+-.-+|.. +..++++|++|++|+||+..+++++..+.+|.. .|++
T Consensus 414 L~----~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNc 487 (519)
T KOG0293|consen 414 LQ----DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNC 487 (519)
T ss_pred cc----cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeE
Confidence 64 666999999999999999998764 233334543 558899999999999999999999999999986 8999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 002494 638 LRFNK-EGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 638 v~~s~-~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
++|+| +..++|++++||+|+||.....
T Consensus 488 VswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 488 VSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99999 7789999999999999987643
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=479.56 Aligned_cols=491 Identities=19% Similarity=0.293 Sum_probs=402.9
Q ss_pred cchHHHHHHHHHHHhhcCHHHHHHHHHHhhCCCCc----hHHHHHHHHcCCHHHHHHHHcCCCcccccccchhHHHHHHH
Q 002494 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRK 78 (915)
Q Consensus 3 ~~~~ev~rli~q~L~~~g~~~s~~~L~~ESg~~~~----~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~ 78 (915)
+.+.||||||.|||+|+.+++++++||+|+++++| ++.|.+.|.+|+||.++..+.+| .+| .+.+..|||
T Consensus 5 iessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP-----~kkL~dLYE 78 (508)
T KOG0275|consen 5 IESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLP-----DKKLIDLYE 78 (508)
T ss_pred eecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCc-----hhHHHHHHH
Confidence 35679999999999999999999999999999998 79999999999999999999999 444 447899999
Q ss_pred HHHHHHHhccCHHHHHHHHHHh--cccccccCHHHHHHHHHhhccccccccccccccCCchHHHHHHHHHHHHHhhcCcC
Q 002494 79 QKYLEALDRQDRAKAVEILVKD--LKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPL 156 (915)
Q Consensus 79 ~~~lEll~~~~~~~A~~~l~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~ 156 (915)
|..|||+|.++...|+.+||+. +..|...++++|.+|+.|+..+.+++.+.+.+ .+.+++|..+.+.|...+..
T Consensus 79 qivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V--- 154 (508)
T KOG0275|consen 79 QIVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV--- 154 (508)
T ss_pred HHHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE---
Confidence 9999999999999999999975 44455568999999999999999999887443 12344566666666554443
Q ss_pred ccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCcc-ceeeecccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCC
Q 002494 157 FRDKLSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIK-TLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIG 235 (915)
Q Consensus 157 ~~~~~~~~~~p~~rL~~ll~qal~~q~~~~~~~~~~~~~~-sl~~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (915)
+||+||+.||+|||+||.++++.+ |+.. +||.+....+ ++. . +.+|..
T Consensus 155 ---------VppSRLlaLlGQaLKWQqHQGLLP---PGt~iDLFRGkAA~K------------~~~----E--e~~Pt~- 203 (508)
T KOG0275|consen 155 ---------VPPSRLLALLGQALKWQQHQGLLP---PGTTIDLFRGKAAMK------------DQE----E--ERYPTQ- 203 (508)
T ss_pred ---------cChHHHHHHHHHHhhhHhhcCCCC---CCceeeeccchhhhh------------hhH----h--hhchHH-
Confidence 999999999999999999999998 5543 6665544333 110 0 111111
Q ss_pred CCCCCCCCCCCCCCcccccccCCCCCCCCCcccCCCCCccCCCCccccccCCCCCCCccceeecCCCcchhhhccccCCC
Q 002494 236 AHGPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQS 315 (915)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~w~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (915)
....|+|+
T Consensus 204 --------------------------------l~r~IKFg---------------------------------------- 211 (508)
T KOG0275|consen 204 --------------------------------LARSIKFG---------------------------------------- 211 (508)
T ss_pred --------------------------------hhhheecc----------------------------------------
Confidence 11112222
Q ss_pred cceeecCCCCCceeeecCCCcccEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccC
Q 002494 316 DEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 395 (915)
Q Consensus 316 ~~~~~s~~g~~~~~~~~d~~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 395 (915)
.++.+.|..|||||+ +|++|+.||.|.+||..+|+.....++.
T Consensus 212 -----------------------------~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQ------- 254 (508)
T KOG0275|consen 212 -----------------------------QKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQ------- 254 (508)
T ss_pred -----------------------------cccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhh-------
Confidence 244577999999998 5899999999999999999877653321
Q ss_pred cccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeC
Q 002494 396 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475 (915)
Q Consensus 396 ~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~ 475 (915)
....+.-+..+|.|+.||.|...||+|+.||.|++|.+.+|.+++..- .+|+..|+|+.|+.|+. .+++++.
T Consensus 255 ----Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sf 326 (508)
T KOG0275|consen 255 ----AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASF 326 (508)
T ss_pred ----hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccc
Confidence 112255688999999999999999999999999999999999987432 28999999999999999 5899999
Q ss_pred CCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCC--CCcEEEEEECCC-
Q 002494 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSAD- 552 (915)
Q Consensus 476 d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~sp~- 552 (915)
|.++++.-+.+|+++..+++|++.|+...|.+ +|..+++++.||+|++|+..+..+...+... ..+|.++-.-|.
T Consensus 327 D~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKn 404 (508)
T KOG0275|consen 327 DQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKN 404 (508)
T ss_pred cceEEEeccccchhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCC
Confidence 99999999999999999999999999999977 5589999999999999999999888877643 347888877774
Q ss_pred CCEEEEEeecCCCCceEEEEECCCCeeEEEecCCC--CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCC
Q 002494 553 GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630 (915)
Q Consensus 553 g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (915)
...+++|.. .+++++.++. |+.++.|.... ++..-+...+|.|.++++.++|+.++.+.+.+|++..++..|.
T Consensus 405 peh~iVCNr----sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE 479 (508)
T KOG0275|consen 405 PEHFIVCNR----SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE 479 (508)
T ss_pred CceEEEEcC----CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc
Confidence 457777764 6679999987 88888886533 2255567799999999999999999999999999999999887
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 002494 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (915)
Q Consensus 631 ~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd 660 (915)
. .|..++-+|..+.||+-+.||.+++|.
T Consensus 480 k--dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 480 K--DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred c--cccccccCcccchhhhhcccchhhhcC
Confidence 6 788999999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=383.12 Aligned_cols=286 Identities=20% Similarity=0.346 Sum_probs=259.3
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
|.+.|.|++|+|+|. .|++|+.|.++++||+.+..++.+ .++|...|.|++|+|||+.||
T Consensus 114 H~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvawsPDgk~iA 173 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAWSPDGKKIA 173 (480)
T ss_pred CCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEECCCcchhh
Confidence 999999999999998 589999999999999999876654 688999999999999999999
Q ss_pred EEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEec-----CCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCC
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-----PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-----~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 499 (915)
+|+.||+|++||.++|+++.. .+.+|...|++++|-| ... +|++++.||+++|||+..+.++..+.+|..+
T Consensus 174 SG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~lsgHT~~ 249 (480)
T KOG0271|consen 174 SGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLSGHTAS 249 (480)
T ss_pred ccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEeccCccc
Confidence 999999999999999987654 6789999999999975 455 7999999999999999999999999999999
Q ss_pred EEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEEC-----------CCCC--------------
Q 002494 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYS-----------ADGT-------------- 554 (915)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s-----------p~g~-------------- 554 (915)
|+|++|-.. .++++|+.|++|++|+...+.....+.+|.+.|+.++.+ |.|+
T Consensus 250 VTCvrwGG~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 250 VTCVRWGGE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred eEEEEEcCC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 999999543 499999999999999999888888999999999999877 2233
Q ss_pred -----------EEEEEeecCCCCceEEEEECCC-CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 002494 555 -----------RLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (915)
Q Consensus 555 -----------~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 622 (915)
.+++++. |.++.+|+... .+++..+.+|.. .|+.+.||||++++++++.|..|++||.++|+.
T Consensus 327 rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred HHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence 4888874 78899999754 458888999998 899999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 623 ~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
+.++.+|-. .|+.++|+.|.++|++|+.|.++++|++.+.
T Consensus 402 lasfRGHv~--~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 402 LASFRGHVA--AVYQVAWSADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred hhhhhhccc--eeEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence 999998866 8999999999999999999999999999876
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=372.87 Aligned_cols=327 Identities=16% Similarity=0.299 Sum_probs=286.4
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd 483 (915)
+.+|.++|.|++|+|+|+.||+|+.|.++++||+.+..... ..++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 67899999999999999999999999999999999976555 7889999999999999999 799999999999999
Q ss_pred cCCCeeE-EEecCCCCCEEEEEeecC---CCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEE
Q 002494 484 VVAGRKQ-YTFEGHEAPVYSVCPHHK---ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (915)
Q Consensus 484 ~~~~~~~-~~~~~~~~~v~~i~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~ 559 (915)
..+|+++ ..+.+|...|++++|.|- +...++++++.||.++|||+..+.++..+.+|..+|+|+.|--+| +++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEec
Confidence 9988765 578999999999999763 355799999999999999999999999999999999999997666 77777
Q ss_pred eecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEc-----------CCCC-------------------------EE
Q 002494 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD-----------TTRN-------------------------RF 603 (915)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s-----------p~~~-------------------------~l 603 (915)
+. |++|++|+...|.+.+.+++|.. .|+.++.+ |.++ .+
T Consensus 265 S~----DrtIkvw~a~dG~~~r~lkGHah-wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 265 SQ----DRTIKVWRALDGKLCRELKGHAH-WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred CC----CceEEEEEccchhHHHhhcccch-heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 64 88899999999999999999987 88887766 3343 49
Q ss_pred EEEeCCCcEEEEeCCC-CceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccC
Q 002494 604 LAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (915)
Q Consensus 604 ~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 682 (915)
++|++|+++.+|+... .+++..+.+|.. .|+.+.||||+++||+++.|..|++|+..+| +.+.++.
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rmtgHq~--lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG-k~lasfR---------- 406 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRMTGHQA--LVNHVSFSPDGRYIASASFDKSVKLWDGRTG-KFLASFR---------- 406 (480)
T ss_pred EEecCCceEEEecccccccchhhhhchhh--heeeEEECCCccEEEEeecccceeeeeCCCc-chhhhhh----------
Confidence 9999999999999765 457777777765 8999999999999999999999999999888 3222222
Q ss_pred CCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCCCceeEeecCCCCCcccee
Q 002494 683 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 762 (915)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~~~v~iw~~~~~~~~~~~~ 762 (915)
T Consensus 407 -------------------------------------------------------------------------------- 406 (480)
T KOG0271|consen 407 -------------------------------------------------------------------------------- 406 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCccCCCceEEEEEecCCceEEEeeccceeEEeecccccCCCCCCccccccceeecCCCCCceeccCCCCCCCCCc
Q 002494 763 ALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES 842 (915)
Q Consensus 763 ~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~ 842 (915)
| |-+.|..++||.|.+.|++|+.|.++++|++...+. ...++| | ..+
T Consensus 407 -----G--Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl-----------------------~~DLpG--h-~DE 453 (480)
T KOG0271|consen 407 -----G--HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL-----------------------KQDLPG--H-ADE 453 (480)
T ss_pred -----h--ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee-----------------------cccCCC--C-Cce
Confidence 2 667799999999999999999999999998766332 223888 8 999
Q ss_pred eeEEEEecCCCeEEEec-CCeeEEee
Q 002494 843 AACIALSKNDSYVMSAS-GGKVSLFN 867 (915)
Q Consensus 843 I~~l~~S~dg~~L~s~s-d~~v~vw~ 867 (915)
|.++.|||||+.+++|+ |..+++|.
T Consensus 454 Vf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 454 VFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999 99999994
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=365.52 Aligned_cols=485 Identities=14% Similarity=0.172 Sum_probs=363.0
Q ss_pred CCCCCceeeecCCCcccEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccc
Q 002494 322 GVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQN 401 (915)
Q Consensus 322 ~~g~~~~~~~~d~~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (915)
++|+.+.+...+.... +...-+|...++-..|||.|- ++|+|...|.|+|||....+.+-..+
T Consensus 36 ~nGksv~ir~i~~~~~-~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKne--------------- 98 (603)
T KOG0318|consen 36 TNGKSVIIRNIDNPAS-VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNE--------------- 98 (603)
T ss_pred eCCCEEEEEECCCccc-eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeee---------------
Confidence 3466666666655433 222234899999999999996 68999999999999998755443333
Q ss_pred cccCCCccCeEEEEEcCCCCEEEEEECC----CeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCC
Q 002494 402 ALLNDAAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (915)
Q Consensus 402 ~~~~~~~~~v~~~~~spd~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~ 477 (915)
+.--.++|..++|++|++++++.++. |.+.+|| +|..+. .+.+|...|+++.|-|..+. .++||+.|+
T Consensus 99 --f~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn 170 (603)
T KOG0318|consen 99 --FQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDN 170 (603)
T ss_pred --eeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCC
Confidence 34467899999999999999887653 3455555 555555 67899999999999998886 899999999
Q ss_pred cEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEec---CCCCcEEEEEECCCCC
Q 002494 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSADGT 554 (915)
Q Consensus 478 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~sp~g~ 554 (915)
+|.+|+-.--+...++..|...|+++.|+|+ |.++++++.||++.+||-.+++.+..+. .|.+.|.+++|+||++
T Consensus 171 ~v~ffeGPPFKFk~s~r~HskFV~~VRysPD--G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~ 248 (603)
T KOG0318|consen 171 TVAFFEGPPFKFKSSFREHSKFVNCVRYSPD--GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST 248 (603)
T ss_pred eEEEeeCCCeeeeecccccccceeeEEECCC--CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc
Confidence 9999996666777788889999999999996 5899999999999999999998888776 7889999999999999
Q ss_pred EEEEEeecCCCCceEEEEECCCCeeEEEecCCCC---CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCC
Q 002494 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK---RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (915)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (915)
.+++++. |.++++||+.+.++++++..... ..+.+ -|. +..|++.+.+|+|.+++......+..+.+|..
T Consensus 249 ~~~T~Sa----Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~-lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK 321 (603)
T KOG0318|consen 249 QFLTVSA----DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC-LWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK 321 (603)
T ss_pred eEEEecC----CceEEEEEeeccceEEEeecCCchhceEEEE-EEe--CCeEEEEEcCcEEEEecccCCChhheeccccc
Confidence 9999985 77799999999999998865432 13444 454 66899999999999999999999999998876
Q ss_pred CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCC---CC--CCCceeeecccCc-cc--
Q 002494 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI---SS--KPLTINALGPASN-VS-- 703 (915)
Q Consensus 632 ~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~--~~~~~~~~~~~~~-~~-- 703 (915)
.|+++..+|++++|++|+.||.|.-|+..+|......-++|...|..+..... .+ ..-..+.+....+ .+
T Consensus 322 --~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~ 399 (603)
T KOG0318|consen 322 --SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKS 399 (603)
T ss_pred --ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccccc
Confidence 89999999999999999999999999999884332222567666665543320 00 0111222211100 00
Q ss_pred ----cccCC------------------cccCC-CCCCCCcccccccCCCceeccCCceeeccCC-CceeEeecCCCCCcc
Q 002494 704 ----AAIAP------------------TLERP-DRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPS 759 (915)
Q Consensus 704 ----~~~~~------------------~v~~~-~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~~~~~~~~ 759 (915)
-+..| .+.+. +........-.+.....+++||+..+|++++ ++|.||.+.......
T Consensus 400 ~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e 479 (603)
T KOG0318|consen 400 EVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE 479 (603)
T ss_pred ceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc
Confidence 00000 00000 0111111111222356789999999999998 899999998633222
Q ss_pred ceeEeecCCccCCCceEEEEEecCCceEEEeeccceeEEeecccccCCCCCCccccccceeecCCCCCceeccCCCCCCC
Q 002494 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (915)
Q Consensus 760 ~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~ 839 (915)
..+ ... |.++|++++||||+.|||++...+.+.+|+....+. ....+.- |
T Consensus 480 e~~---~~~--h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~----------------------~~~~w~F--H- 529 (603)
T KOG0318|consen 480 EAK---LLE--HRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV----------------------KTNRWAF--H- 529 (603)
T ss_pred eee---eec--ccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce----------------------ecceeee--e-
Confidence 222 222 899999999999999999999999999998776432 1111221 7
Q ss_pred CCceeEEEEecCCCeEEEec-CCeeEEeeccCCC
Q 002494 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK 872 (915)
Q Consensus 840 ~~~I~~l~~S~dg~~L~s~s-d~~v~vw~l~t~k 872 (915)
.++|++++||||++++|||| |.+|.+|+++...
T Consensus 530 takI~~~aWsP~n~~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 530 TAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred eeeEEEEEeCCCceEEEeccccceEEEEEccChh
Confidence 99999999999999999999 9999999998643
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=379.28 Aligned_cols=481 Identities=11% Similarity=0.166 Sum_probs=388.7
Q ss_pred cccCCCcceeecCCCCCceeeecCC-------CcccEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCcee
Q 002494 310 IRTGQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERL 382 (915)
Q Consensus 310 ~~~~~~~~~~~s~~g~~~~~~~~d~-------~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~ 382 (915)
.....+..++.||+|..+.....+. ....+++.+..+.+|.|+.|||||+ ++|+|. .+.+.||.......-
T Consensus 53 e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~-~fav~~-gn~lqiw~~P~~~~~ 130 (893)
T KOG0291|consen 53 ETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGK-FFAVGC-GNLLQIWHAPGEIKN 130 (893)
T ss_pred ecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCc-EEEEEe-cceeEEEecCcchhc
Confidence 3444677899999998877766553 2456677778899999999999998 455553 678999997654321
Q ss_pred cccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEe
Q 002494 383 AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA 462 (915)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s 462 (915)
.-. +-.....+.+|...|.++.|+.|.++|++|+.|..+++|.++..+... ...+.+|.+.|.++-|.
T Consensus 131 ~~~-----------pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~-~~~l~gHkd~VvacfF~ 198 (893)
T KOG0291|consen 131 EFN-----------PFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF-TYALNGHKDYVVACFFG 198 (893)
T ss_pred ccC-----------cceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc-eEeccCCCcceEEEEec
Confidence 000 111233467899999999999999999999999999999998876633 33678999999999999
Q ss_pred cCCCeEEEEEEeCCCcEEEEEcCC-----------------------Cee-----------EEEecCCCCCEEEEEeecC
Q 002494 463 HPNKQLCIVTCGDDKMIKVWDVVA-----------------------GRK-----------QYTFEGHEAPVYSVCPHHK 508 (915)
Q Consensus 463 ~~~~~~~l~s~~~d~~i~vwd~~~-----------------------~~~-----------~~~~~~~~~~v~~i~~~~~ 508 (915)
.+.. -+++.+.||.+.+|.... ++. ..-+......|++.+|++.
T Consensus 199 ~~~~--~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~ 276 (893)
T KOG0291|consen 199 ANSL--DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKG 276 (893)
T ss_pred cCcc--eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCC
Confidence 8887 599999999999998651 111 0111223477899999886
Q ss_pred CCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCC
Q 002494 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588 (915)
Q Consensus 509 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 588 (915)
. +.|++|-..|...+|++.....+..+.....+|..++|+..|.+|+.++. +-|++-+|+..+...+.+.++|..
T Consensus 277 t--~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~ 351 (893)
T KOG0291|consen 277 T--NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD 351 (893)
T ss_pred c--eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc
Confidence 5 68999999999999999988888888888889999999999999999874 477899999999888999999998
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 002494 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668 (915)
Q Consensus 589 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 668 (915)
.+++++++|||+++++|++||+|+|||..++-++.++..|.. .|+.+.|+..|+.+++++-||+|+.||+... +..
T Consensus 352 -~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts--~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNf 427 (893)
T KOG0291|consen 352 -RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS--GVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNF 427 (893)
T ss_pred -ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC--ceEEEEEEecCCEEEEeecCCeEEeeeeccc-cee
Confidence 899999999999999999999999999999999999998876 8999999999999999999999999999987 677
Q ss_pred eeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCC--Cc
Q 002494 669 RMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV--DK 746 (915)
Q Consensus 669 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~--~~ 746 (915)
+++......... +++.-|.|..+.+++. =.
T Consensus 428 RTft~P~p~Qfs------------------------------------------------cvavD~sGelV~AG~~d~F~ 459 (893)
T KOG0291|consen 428 RTFTSPEPIQFS------------------------------------------------CVAVDPSGELVCAGAQDSFE 459 (893)
T ss_pred eeecCCCceeee------------------------------------------------EEEEcCCCCEEEeeccceEE
Confidence 777654321111 1233455777766666 47
Q ss_pred eeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEeeccceeEEeeccccc----------------CCCCC
Q 002494 747 IKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTE----------------RNPSG 810 (915)
Q Consensus 747 v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~----------------~s~dg 810 (915)
|.+|++.+ +..+. .+.| |.++|.+++|+|+|..|++++.|.+|++|++-... |+|||
T Consensus 460 IfvWS~qT---GqllD--iLsG--HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG 532 (893)
T KOG0291|consen 460 IFVWSVQT---GQLLD--ILSG--HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDG 532 (893)
T ss_pred EEEEEeec---Ceeee--hhcC--CCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCC
Confidence 89999986 55554 4566 99999999999999999999999999999996641 89999
Q ss_pred Cccccc----cceeecCCCCCceeccCCCCCC-----------------CCCceeEEEEecCCCeEEEec-CCeeEEeec
Q 002494 811 KATANV----APQLWQPPSGTLMTNDINESKP-----------------TEESAACIALSKNDSYVMSAS-GGKVSLFNM 868 (915)
Q Consensus 811 ~~~~~~----~i~l~~~~~~~~~~~~~~~~~h-----------------~~~~I~~l~~S~dg~~L~s~s-d~~v~vw~l 868 (915)
+.++++ .|.+||+..+..+.. +.|..- .....+.+++|+||+++++|+ .+.|++|++
T Consensus 533 ~elaVaTldgqItf~d~~~~~q~~~-IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 533 KELAVATLDGQITFFDIKEAVQVGS-IDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred CeEEEEEecceEEEEEhhhceeecc-ccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 999988 488999888765532 222100 246789999999999999999 899999999
Q ss_pred cCC
Q 002494 869 MTF 871 (915)
Q Consensus 869 ~t~ 871 (915)
.++
T Consensus 612 ~~~ 614 (893)
T KOG0291|consen 612 PEG 614 (893)
T ss_pred chh
Confidence 886
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=380.82 Aligned_cols=500 Identities=13% Similarity=0.175 Sum_probs=390.6
Q ss_pred ceeecCCCCCceeeecC------CCcccE-EEEec--CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccce
Q 002494 317 EVSFAGVAHTPNVYSQD------DLTKTV-VRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF 387 (915)
Q Consensus 317 ~~~~s~~g~~~~~~~~d------~~~~~~-~~~l~--h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~ 387 (915)
.++|+++|+.++....+ ..++.. +.... ....+++++.+||++ .|++++....+++|++.+++.++..+
T Consensus 24 ~~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irswK- 101 (775)
T KOG0319|consen 24 PVAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRSWK- 101 (775)
T ss_pred ceeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHhHh-
Confidence 37888888887766554 335554 33333 567899999999997 68889999999999999998775421
Q ss_pred eeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCe
Q 002494 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 467 (915)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 467 (915)
.-|+++|.-++|+|.|..+++|+.||.++|||+..+.+.. .+.||.+.|+++.|.|+-..
T Consensus 102 -----------------a~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 102 -----------------AIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred -----------------hccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccch
Confidence 2399999999999999999999999999999999986665 78999999999999998876
Q ss_pred EEEEEEeCCCcEEEEEcCCCe-eEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEE
Q 002494 468 LCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 546 (915)
Q Consensus 468 ~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 546 (915)
.+|++|..|+.+++||+.+.. ++..+..|.+.|+++.+.++ +..+++++.|..+.+||+...+....... ...+.+
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d--~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~ 238 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSED--SLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLES 238 (775)
T ss_pred hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccC--CceEEEeccCcEEEEeehhhhhhhheech-hhheee
Confidence 578999999999999999654 47788899999999999886 47899999999999999965554443332 223455
Q ss_pred EEECCC-----CCEEEEEeecCCCCceEEEEECCCC-------------------------------------------e
Q 002494 547 MAYSAD-----GTRLFSCGTSKEGESHLVEWNESEG-------------------------------------------A 578 (915)
Q Consensus 547 ~~~sp~-----g~~l~~~~~~~~~~~~i~~wd~~~~-------------------------------------------~ 578 (915)
+.+-++ |.++++++. ++.+++||.+++ +
T Consensus 239 vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 239 VVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred EEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 555555 456666653 555666665544 3
Q ss_pred eEEEecCCCCCceEEEEE-cCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 002494 579 IKRTYSGFRKRSLGVVQF-DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (915)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~-sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~ 657 (915)
....+-|..+ .|..++| .|+.++++++++.+.+++|+..+..+. .+.+|.. .|.+++...+|.+|++|+.|.+++
T Consensus 315 i~k~ivG~nd-EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e--~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 315 IVKQIVGYND-EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTE--AVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred EehhhcCCch-hheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchh--heeeeeecccCcEEEEecCCceEE
Confidence 3334445444 5666655 678899999999999999999876665 6667765 888998667789999999999999
Q ss_pred EEEcCCC---ceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCC--Ccccccc-------
Q 002494 658 ILANSDG---VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP--AVSISSL------- 725 (915)
Q Consensus 658 iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~------- 725 (915)
+|.++++ ..++....+|.+.+..+.... .....+++.++ |.++++|++... ......+
T Consensus 391 lWr~~~~~~~~~~~a~~~gH~~svgava~~~-----~~asffvsvS~-----D~tlK~W~l~~s~~~~~~~~~~~~~t~~ 460 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGSK-----LGASFFVSVSQ-----DCTLKLWDLPKSKETAFPIVLTCRYTER 460 (775)
T ss_pred EEEecCCcchhhhhhhhcccccccceeeecc-----cCccEEEEecC-----CceEEEecCCCcccccccceehhhHHHH
Confidence 9988544 235667789999988876632 24567777776 449999988661 1111111
Q ss_pred -cC---CCceeccCCceeeccCC-CceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEeeccceeEEee
Q 002494 726 -GT---IDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWK 800 (915)
Q Consensus 726 -~~---~~~~~s~dg~~la~~~~-~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~ 800 (915)
.. ..++++|+.+++|+++. .+.+||++.. .. + ...+.| |...|.|+.|+|..+.|+|+|.|++|+||.
T Consensus 461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~---~~-l-~~vLsG--H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ---LR-L-LGVLSG--HTRGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hhcccccceEecCCCceEEecccccceeeecccC---ce-E-EEEeeC--CccceEEEEeccccceeEeccCCceEEEEE
Confidence 11 36789999999999999 8999999983 22 2 235666 999999999999999999999999999999
Q ss_pred ccccc----------------CCCCCCccccc----cceeecCCCCCceeccCCCCCCCCCceeEEEEecCCCeEEEec-
Q 002494 801 WQRTE----------------RNPSGKATANV----APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS- 859 (915)
Q Consensus 801 l~~~~----------------~s~dg~~~~~~----~i~l~~~~~~~~~~~~~~~~~h~~~~I~~l~~S~dg~~L~s~s- 859 (915)
++.-+ |-.+|+.+.++ -+++|++.+++.... +.+ | ..+|++++.++++.+++||+
T Consensus 534 is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~t-lD~--H-~DrvWaL~~~~~~~~~~tgg~ 609 (775)
T KOG0319|consen 534 ISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMT-LDA--H-NDRVWALSVSPLLDMFVTGGG 609 (775)
T ss_pred eccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhh-hhh--c-cceeEEEeecCccceeEecCC
Confidence 98743 44667766655 599999999998876 777 8 99999999999999999999
Q ss_pred CCeeEEeeccC
Q 002494 860 GGKVSLFNMMT 870 (915)
Q Consensus 860 d~~v~vw~l~t 870 (915)
||.|.+|.=.|
T Consensus 610 Dg~i~~wkD~T 620 (775)
T KOG0319|consen 610 DGRIIFWKDVT 620 (775)
T ss_pred CeEEEEeecCc
Confidence 99999997444
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=357.30 Aligned_cols=446 Identities=14% Similarity=0.187 Sum_probs=343.2
Q ss_pred CCCcceeecCCCCCceeeecCCC---------cccEEEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCcee
Q 002494 313 GQSDEVSFAGVAHTPNVYSQDDL---------TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERL 382 (915)
Q Consensus 313 ~~~~~~~~s~~g~~~~~~~~d~~---------~~~~~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~ 382 (915)
++|.++.|++|+++++....... ++..+-.+. |...|++++|-|..++-+++|+.|++|.+|+-..-+-.
T Consensus 104 G~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk 183 (603)
T KOG0318|consen 104 GPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFK 183 (603)
T ss_pred cccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeee
Confidence 46777888888887766554332 445555555 99999999999999999999999999999985443322
Q ss_pred cccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEe
Q 002494 383 AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA 462 (915)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s 462 (915)
. .+..|..-|+|+.|+|||.++++++.||+|.+||=.+|+.+..+..-.+|.+.|.+++|+
T Consensus 184 ~-------------------s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs 244 (603)
T KOG0318|consen 184 S-------------------SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS 244 (603)
T ss_pred e-------------------cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC
Confidence 2 256799999999999999999999999999999999988777443334899999999999
Q ss_pred cCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCC---CEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecC
Q 002494 463 HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA---PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539 (915)
Q Consensus 463 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 539 (915)
||+. .++|++.|.+++|||+.+.+++.++.-... ....+-|. + ..|++.+.+|+|.+++......+..+.+
T Consensus 245 PDs~--~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--k--d~lItVSl~G~in~ln~~d~~~~~~i~G 318 (603)
T KOG0318|consen 245 PDST--QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--K--DHLITVSLSGTINYLNPSDPSVLKVISG 318 (603)
T ss_pred CCCc--eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--C--CeEEEEEcCcEEEEecccCCChhheecc
Confidence 9999 599999999999999999999988864322 22233443 2 4799999999999999999888889999
Q ss_pred CCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEe-cCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 002494 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (915)
Q Consensus 540 ~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 618 (915)
|...|++++.+|++++|++++. ||.|.-||..+|..-+.. ++|.. .|.+++.+..+ .+++.+.|.++++.++.
T Consensus 319 HnK~ITaLtv~~d~~~i~Sgsy----DG~I~~W~~~~g~~~~~~g~~h~n-qI~~~~~~~~~-~~~t~g~Dd~l~~~~~~ 392 (603)
T KOG0318|consen 319 HNKSITALTVSPDGKTIYSGSY----DGHINSWDSGSGTSDRLAGKGHTN-QIKGMAASESG-ELFTIGWDDTLRVISLK 392 (603)
T ss_pred cccceeEEEEcCCCCEEEeecc----CceEEEEecCCccccccccccccc-eEEEEeecCCC-cEEEEecCCeEEEEecc
Confidence 9999999999999999999986 888999999988775544 56766 88888877544 57888888899999774
Q ss_pred CCc------------e-------------------EEEEcCCCC------CCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 002494 619 NMN------------M-------------------LTTVDADGG------LPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (915)
Q Consensus 619 ~~~------------~-------------------~~~~~~~~~------~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 661 (915)
... + +..++.+.. .-...+++++|+++.+++|+.||.|+||.+
T Consensus 393 ~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl 472 (603)
T KOG0318|consen 393 DNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSL 472 (603)
T ss_pred cCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEe
Confidence 211 0 001111100 113467899999999999999999999999
Q ss_pred CCCce-eeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceee
Q 002494 662 SDGVR-LLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 740 (915)
Q Consensus 662 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la 740 (915)
..+.. .......|...++ .+++|||+.+||
T Consensus 473 ~g~~l~ee~~~~~h~a~iT-------------------------------------------------~vaySpd~~yla 503 (603)
T KOG0318|consen 473 SGDELKEEAKLLEHRAAIT-------------------------------------------------DVAYSPDGAYLA 503 (603)
T ss_pred cCCcccceeeeecccCCce-------------------------------------------------EEEECCCCcEEE
Confidence 87621 1123334544433 348999999999
Q ss_pred ccCC-CceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEeeccceeEEeecccccCCCCCCccccccce
Q 002494 741 AEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQ 819 (915)
Q Consensus 741 ~~~~-~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~ 819 (915)
+++. ++|.+|++.+... ....... |++.|.+++|||+++++|+|+-|-+|.||++....
T Consensus 504 ~~Da~rkvv~yd~~s~~~----~~~~w~F--HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~-------------- 563 (603)
T KOG0318|consen 504 AGDASRKVVLYDVASREV----KTNRWAF--HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA-------------- 563 (603)
T ss_pred EeccCCcEEEEEcccCce----ecceeee--eeeeEEEEEeCCCceEEEeccccceEEEEEccChh--------------
Confidence 9988 9999999986222 2222333 99999999999999999999999999999887621
Q ss_pred eecCCCCCceeccCCCCCCCCCceeEEEEecCCCeEEEecCCeeEEeecc
Q 002494 820 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMM 869 (915)
Q Consensus 820 l~~~~~~~~~~~~~~~~~h~~~~I~~l~~S~dg~~L~s~sd~~v~vw~l~ 869 (915)
+.+. +++ +| ...|+.++|-.+...+-+|.|..|++|++.
T Consensus 564 -------~~i~--ikn-AH-~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 564 -------KHII--IKN-AH-LGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred -------hheE--ecc-cc-ccCceeEEEecCceEEeccCcceeEEeccc
Confidence 1111 222 37 888999999866554444449999999874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=361.99 Aligned_cols=519 Identities=16% Similarity=0.191 Sum_probs=409.9
Q ss_pred CCCcceeecCCCCCceeeecCCC--------------cccEEEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002494 313 GQSDEVSFAGVAHTPNVYSQDDL--------------TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVG 377 (915)
Q Consensus 313 ~~~~~~~~s~~g~~~~~~~~d~~--------------~~~~~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~ 377 (915)
.++.++.|||+|+.+++.....+ +....++.. |.+.|.++.||.|.+ ++++|+.|-++++|++.
T Consensus 97 ~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr-~l~~gsrD~s~rl~~v~ 175 (893)
T KOG0291|consen 97 RGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR-LLVTGSRDLSARLFGVD 175 (893)
T ss_pred CccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc-eEEeccccceEEEEEec
Confidence 48899999999999888764432 333444444 899999999999998 78999999999999998
Q ss_pred CCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecC------------------
Q 002494 378 SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP------------------ 439 (915)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~------------------ 439 (915)
..+.+. ...+.+|...|..+-|..+...+.+.+.||.+.+|....
T Consensus 176 ~~k~~~-----------------~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~ 238 (893)
T KOG0291|consen 176 GNKNLF-----------------TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDE 238 (893)
T ss_pred cccccc-----------------eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccc
Confidence 776532 223789999999999999999999999999999998771
Q ss_pred -----CCc-eee-------eEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEee
Q 002494 440 -----TGE-LRQ-------HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (915)
Q Consensus 440 -----~~~-~~~-------~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 506 (915)
+++ ... ..-+......|++.+|++... +|++|-..|...+|++..-.+++.+.-...+|..++|+
T Consensus 239 ~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~--~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N 316 (893)
T KOG0291|consen 239 EMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTN--LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFN 316 (893)
T ss_pred cccccchhhhcceEEEEEEeeeecccccceeeeeccCCce--EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEec
Confidence 111 000 001122236799999998887 89999999999999999999999998888999999997
Q ss_pred cCCCccEEEEEeCC-CeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecC
Q 002494 507 HKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (915)
Q Consensus 507 ~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (915)
.. |.+|+.|+.. |.+.+|+..+...+...++|...+++++++|||+++++|+. |+.|++||...|-|..+|..
T Consensus 317 ~t--GDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e----DgKVKvWn~~SgfC~vTFte 390 (893)
T KOG0291|consen 317 ST--GDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE----DGKVKVWNTQSGFCFVTFTE 390 (893)
T ss_pred cc--CCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC----CCcEEEEeccCceEEEEecc
Confidence 64 4688888765 89999999999999999999999999999999999999985 78899999999999999999
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCC-cEEEEEcCCC
Q 002494 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN-GIKILANSDG 664 (915)
Q Consensus 586 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg-~i~iwd~~~~ 664 (915)
|.. .|+.+.|+..|+.+++++-||+|+.||+...+..+++...... ...+++..|.|.+++.|+.|. .|.+|++++|
T Consensus 391 Hts-~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~-QfscvavD~sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 391 HTS-GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI-QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred CCC-ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce-eeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence 998 8999999999999999999999999999999999999876533 567899999999999998775 5999999999
Q ss_pred ceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccC----CCceeccCCceee
Q 002494 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT----IDGSRLVDVKPRV 740 (915)
Q Consensus 665 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~s~dg~~la 740 (915)
+++..+.||.++|..+.+. |++..++++++ |.||++|+.-........+.. ..+.|+|||+.+|
T Consensus 469 -qllDiLsGHEgPVs~l~f~------~~~~~LaS~SW-----DkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 469 -QLLDILSGHEGPVSGLSFS------PDGSLLASGSW-----DKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELA 536 (893)
T ss_pred -eeeehhcCCCCcceeeEEc------cccCeEEeccc-----cceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEE
Confidence 8999999999999987766 78999999996 559999997665333333222 5789999999999
Q ss_pred ccCC-CceeEeecCCCCCcccee-------------EeecCCccCCCceEEEEEecCCceEEEeeccceeEEeeccccc-
Q 002494 741 AEDV-DKIKSWRIPDISDPSQIK-------------ALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTE- 805 (915)
Q Consensus 741 ~~~~-~~v~iw~~~~~~~~~~~~-------------~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~- 805 (915)
+++- |.|.+||+.+..+-..+. .++-.........+.+++|+||.++++||....|.||+++.+.
T Consensus 537 VaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 537 VATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred EEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhe
Confidence 9988 899999987632211111 0111111244678999999999999999999999999998754
Q ss_pred ---------CCCCCC--------ccccccceeecCCCCCc---eeccCCCCC-------C--CCCceeEEEEecCCCeEE
Q 002494 806 ---------RNPSGK--------ATANVAPQLWQPPSGTL---MTNDINESK-------P--TEESAACIALSKNDSYVM 856 (915)
Q Consensus 806 ---------~s~dg~--------~~~~~~i~l~~~~~~~~---~~~~~~~~~-------h--~~~~I~~l~~S~dg~~L~ 856 (915)
.+-||. ....+.+.+-|.+.+.+ +...++|.. + ..-+|+++.|||.|+-+|
T Consensus 617 lkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFA 696 (893)
T KOG0291|consen 617 LKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFA 696 (893)
T ss_pred eeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeee
Confidence 122222 22223455555433221 111222211 1 023588999999999999
Q ss_pred EecCCeeEEeeccCC
Q 002494 857 SASGGKVSLFNMMTF 871 (915)
Q Consensus 857 s~sd~~v~vw~l~t~ 871 (915)
+++..-|.||.+++.
T Consensus 697 aatTEGl~IYsld~~ 711 (893)
T KOG0291|consen 697 AATTEGLLIYSLDTT 711 (893)
T ss_pred eecccceEEEecCCc
Confidence 999777889988764
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=367.11 Aligned_cols=470 Identities=17% Similarity=0.235 Sum_probs=379.2
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCce-ecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCC
Q 002494 352 MDFHPQQQTILLVGTNVGDISLWEVGSRER-LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (915)
Q Consensus 352 v~fspd~~~ll~~gs~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg 430 (915)
++|+++|+ +|++.. ...|.+-|+.++.. +... -......+++++.+||+++|++++...
T Consensus 25 ~~~s~nG~-~L~t~~-~d~Vi~idv~t~~~~l~s~------------------~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTAC-GDRVIIIDVATGSIALPSG------------------SNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEec-CceEEEEEccCCceecccC------------------CccchhhhheeeecCCccEEEEeeccc
Confidence 89999998 577654 45699999999876 3221 133567899999999999999999999
Q ss_pred eEEEEEecCCCceeeeEEeec-ccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCC
Q 002494 431 IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509 (915)
Q Consensus 431 ~i~vwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 509 (915)
.+++|++.+++.++ .++. |.++|.-++|+|.+. ++++|+.|+.++|||+..+.+.+.|++|.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998776 4445 999999999999997 89999999999999999999999999999999999999988
Q ss_pred CccEEEEEeCCCeEEEEecCCCCc-eeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCC
Q 002494 510 SIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588 (915)
Q Consensus 510 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 588 (915)
....|++|+.|+.+++||++.... ...+..|.+.|++++|++|+..+++++. |..+.+||+.+.+..++++...
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 777899999999999999985544 6677889999999999999999999885 7779999998777777766554
Q ss_pred CceEEEEEcCC-----CCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 002494 589 RSLGVVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (915)
Q Consensus 589 ~~v~~~~~sp~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 663 (915)
.+-++.+-++ |.+++++|.+|.+++||..+++.+......... .+..+...+....++..+.|..+.++|..+
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~-e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSE-EIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCch-hhhcceeccccCceEEEEccceEEEEEccc
Confidence 4666777666 679999999999999999999887666544322 366676666666667777889999999999
Q ss_pred CceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccC-CCceec----cCCce
Q 002494 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT-IDGSRL----VDVKP 738 (915)
Q Consensus 664 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~s----~dg~~ 738 (915)
. ++.+.+.|.++.|..+.+- .|+-..++.+++. +.+++++..++. .+.+.+ .+.+.| .+|-+
T Consensus 313 l-~i~k~ivG~ndEI~Dm~~l-----G~e~~~laVATNs-----~~lr~y~~~~~~--c~ii~GH~e~vlSL~~~~~g~l 379 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDEILDMKFL-----GPEESHLAVATNS-----PELRLYTLPTSY--CQIIPGHTEAVLSLDVWSSGDL 379 (775)
T ss_pred c-EEehhhcCCchhheeeeec-----CCccceEEEEeCC-----CceEEEecCCCc--eEEEeCchhheeeeeecccCcE
Confidence 8 8999999999999887554 2455555555542 244444333322 224444 444444 45778
Q ss_pred eeccCC-CceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCC-ceEEEeeccceeEEeeccccc-----------
Q 002494 739 RVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG-LSLLALASNAVHKLWKWQRTE----------- 805 (915)
Q Consensus 739 la~~~~-~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~-~~l~~~~~dg~v~iW~l~~~~----------- 805 (915)
+++++. +++++|++++......+. -.+++|...|.+++++..+ .+++++|.|+++++|+++..+
T Consensus 380 lat~sKD~svilWr~~~~~~~~~~~---a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~ 456 (775)
T KOG0319|consen 380 LATGSKDKSVILWRLNNNCSKSLCV---AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCR 456 (775)
T ss_pred EEEecCCceEEEEEecCCcchhhhh---hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhh
Confidence 999988 899999996433232322 2335599999999998766 566999999999999998721
Q ss_pred --------------CCCCCCccccc----cceeecCCCCCceeccCCCCCCCCCceeEEEEecCCCeEEEec-CCeeEEe
Q 002494 806 --------------RNPSGKATANV----APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLF 866 (915)
Q Consensus 806 --------------~s~dg~~~~~~----~i~l~~~~~~~~~~~~~~~~~h~~~~I~~l~~S~dg~~L~s~s-d~~v~vw 866 (915)
.+|+.+.+|++ +.++|+++.+.+... +.| | ...|+++.||+..+.|||+| |++|++|
T Consensus 457 ~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v-LsG--H-~RGvw~V~Fs~~dq~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 457 YTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV-LSG--H-TRGVWCVSFSKNDQLLATCSGDKTVKIW 532 (775)
T ss_pred HHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE-eeC--C-ccceEEEEeccccceeEeccCCceEEEE
Confidence 47888888888 699999998877776 888 8 99999999999999999999 9999999
Q ss_pred eccCCCC
Q 002494 867 NMMTFKP 873 (915)
Q Consensus 867 ~l~t~k~ 873 (915)
.+.++..
T Consensus 533 ~is~fSC 539 (775)
T KOG0319|consen 533 SISTFSC 539 (775)
T ss_pred Eecccee
Confidence 9999753
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=361.58 Aligned_cols=437 Identities=15% Similarity=0.210 Sum_probs=349.2
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEE
Q 002494 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (915)
Q Consensus 344 ~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l 423 (915)
.....|+|+.-+|+.. +||+|..||.|+||+..++..+.. +.+|..+|+++.|+..|..|
T Consensus 63 ~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rl 122 (888)
T KOG0306|consen 63 KKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRL 122 (888)
T ss_pred cccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceE
Confidence 3456899999999985 789999999999999998755433 68899999999999999999
Q ss_pred EEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEE
Q 002494 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (915)
Q Consensus 424 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 503 (915)
++||.|+.|.+||+-...-.. .+.+|+..|+..-|..+.+ ++++.+.|+.|++||+.+..|..+...|.+.++.+
T Consensus 123 aSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l 197 (888)
T KOG0306|consen 123 ASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWAL 197 (888)
T ss_pred eecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEE
Confidence 999999999999998754333 7889999999999988666 89999999999999999999999999999999999
Q ss_pred EeecCCCccEEEEEeCCCeEEEEecCCCC------------------------ce-------------------------
Q 002494 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLG------------------------SR------------------------- 534 (915)
Q Consensus 504 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------------------~~------------------------- 534 (915)
++.+ +.+++++.|+.+++|++.... ..
T Consensus 198 ~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI 273 (888)
T KOG0306|consen 198 VLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRI 273 (888)
T ss_pred EEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheee
Confidence 9975 479999999999999661000 00
Q ss_pred --------------------------------------------------------------------------------
Q 002494 535 -------------------------------------------------------------------------------- 534 (915)
Q Consensus 535 -------------------------------------------------------------------------------- 534 (915)
T Consensus 274 ~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~ 353 (888)
T KOG0306|consen 274 RSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLEN 353 (888)
T ss_pred cCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEecc
Confidence
Q ss_pred -------------eEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCC
Q 002494 535 -------------VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN 601 (915)
Q Consensus 535 -------------~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 601 (915)
..+.+|...|.++++|.+...+++++ .+.+.+|+..+.++++++... .+.+..|-|.++
T Consensus 354 s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-----~~SikiWn~~t~kciRTi~~~---y~l~~~Fvpgd~ 425 (888)
T KOG0306|consen 354 SGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-----GESIKIWNRDTLKCIRTITCG---YILASKFVPGDR 425 (888)
T ss_pred CCCCCccccccceeeeccchhheeEEEeecCceeeeecC-----CCcEEEEEccCcceeEEeccc---cEEEEEecCCCc
Confidence 00112333566777777776666664 556999999999999999765 688899999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCccccc
Q 002494 602 RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681 (915)
Q Consensus 602 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 681 (915)
++++|...|.+.+||+.+...+.+++.|.+ .+++++.+||+..+++||.|.+|++||..- .....+....+..+
T Consensus 426 ~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg--aIWsi~~~pD~~g~vT~saDktVkfWdf~l----~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 426 YIVLGTKNGELQVFDLASASLVETIRAHDG--AIWSISLSPDNKGFVTGSADKTVKFWDFKL----VVSVPGTQKKVLSL 499 (888)
T ss_pred eEEEeccCCceEEEEeehhhhhhhhhcccc--ceeeeeecCCCCceEEecCCcEEEEEeEEE----EeccCcccceeeee
Confidence 999999999999999999999999988876 899999999999999999999999999742 22222222221111
Q ss_pred CCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCccccccc-C-CCceeccCCceeeccCC-CceeEeecCCCCCc
Q 002494 682 PSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG-T-IDGSRLVDVKPRVAEDV-DKIKSWRIPDISDP 758 (915)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~-~~~~~s~dg~~la~~~~-~~v~iw~~~~~~~~ 758 (915)
... +.+ .+. . .++.+||||+++|++-- ++|+||-+++
T Consensus 500 ~~~---------rtL---------------------------el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt---- 539 (888)
T KOG0306|consen 500 KHT---------RTL---------------------------ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT---- 539 (888)
T ss_pred ccc---------eEE---------------------------eccccEEEEEEcCCCcEEEEEeccCeEEEEEecc----
Confidence 000 000 011 1 34578999999999876 8999999885
Q ss_pred cceeEeecCCccCCCceEEEEEecCCceEEEeeccceeEEeeccccc----------------CCCCCCccccc----cc
Q 002494 759 SQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTE----------------RNPSGKATANV----AP 818 (915)
Q Consensus 759 ~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~----------------~s~dg~~~~~~----~i 818 (915)
....+.+-| |.-+|.||..|||++.++|||.|.+|+||-++-+. |-|....+.++ .+
T Consensus 540 -lKFflsLYG--HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kv 616 (888)
T KOG0306|consen 540 -LKFFLSLYG--HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKV 616 (888)
T ss_pred -eeeeeeecc--cccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceE
Confidence 222335556 99999999999999999999999999999998765 33433333322 48
Q ss_pred eeecCCCCCceeccCCCCCCCCCceeEEEEecCCCeEEEec-CCeeEEeeccC
Q 002494 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT 870 (915)
Q Consensus 819 ~l~~~~~~~~~~~~~~~~~h~~~~I~~l~~S~dg~~L~s~s-d~~v~vw~l~t 870 (915)
+-||-.+-+.+.. +.+ | ...|++++.+|+|.+++++| |.+|++|....
T Consensus 617 KqWDg~kFe~iq~-L~~--H-~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 617 KQWDGEKFEEIQK-LDG--H-HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred Eeechhhhhhhee-ecc--c-hheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 8898777666665 787 8 99999999999999999999 99999998654
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=357.02 Aligned_cols=555 Identities=16% Similarity=0.224 Sum_probs=360.0
Q ss_pred chHHHHHHHHHHHhhcCHHHHHHHHHHhhCCCCc--------hHHHH--------------------------HHH--Hc
Q 002494 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFFFN--------MKHFE--------------------------DQV--QA 47 (915)
Q Consensus 4 ~~~ev~rli~q~L~~~g~~~s~~~L~~ESg~~~~--------~~~l~--------------------------~~i--~~ 47 (915)
..++++|++++||+..||+++...|.+|.++... ...+| .++ ..
T Consensus 20 ~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 99 (707)
T KOG0263|consen 20 HTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVEK 99 (707)
T ss_pred chHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhhh
Confidence 4578999999999999999999999999774321 11121 000 00
Q ss_pred CCHHHH------HHHHcCCCcc-------cccccchhHHHHHHHHHHHHHHhccCHHHHHHHHHHhcccccccCHHHHHH
Q 002494 48 GEWDEV------ERYLCGFTKV-------EDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKE 114 (915)
Q Consensus 48 G~w~~~------~~~l~~~~~~-------~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~ 114 (915)
-.|... +..-..++.. ...++. .++|+|+.|.||+|+.++..+.|..|+.+.--.+.....+.+.+
T Consensus 100 ~~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~-~iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~i~~ 178 (707)
T KOG0263|consen 100 ALWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELS-PILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSESIFQ 178 (707)
T ss_pred ccccccCCChhHhhhhhhcchhhhCcchhhhHHHH-HHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHHHHH
Confidence 111111 2222222222 222333 49999999999999999999999999988655555567888999
Q ss_pred HHHhhccccccccccccccCCc----hHHHHHHHHHHHHHhhcCcCccccCCCCCCCchHHHHHHHHHHHHHHhhccCCC
Q 002494 115 ITQLLTLDNFRQNEQLSKYGDT----KSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKNPR 190 (915)
Q Consensus 115 l~~l~~~~~~~~~~~~~~~~~~----~~~r~~l~~~l~~~i~~~~~~~~~~~~~~~p~~rL~~ll~qal~~q~~~~~~~~ 190 (915)
|..+-+...+.+++....+... .-+|. .+..|.+++.++.. +-..-+..+++|++-.++......+
T Consensus 179 l~~~~~~~~i~~ne~~~~~~~~ky~i~~sr~-s~~lL~~~l~~~~~---------~~g~~i~~ii~~hldi~v~~~~~~r 248 (707)
T KOG0263|consen 179 LLSLETIKHIKENETARAFRKNKYVIRLSRD-SFDLLLRFLQEDNN---------IGGTIIIKIINQHLDIDVFDGVMAR 248 (707)
T ss_pred HHhhhhHHHHhhhhhHHHHhhCcEEEEecHH-HHHHHHHHhhhhcc---------ccchHHHHHHHHHhCcccccccccc
Confidence 9999888888777766655442 11122 22344444444332 3345678888999877776553332
Q ss_pred CCCCccce-------eeecccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCC-CCCCCCCcccccccCCC-CC
Q 002494 191 PNPDIKTL-------FTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPFQP-VVSPSPGAIAGWMSSNS-PS 261 (915)
Q Consensus 191 ~~~~~~sl-------~~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~-~~ 261 (915)
....+..+ +.++.-.. .....-....+++... ++. .+....-.+. ..+.. +.
T Consensus 249 ~~~~~~~~~g~~~~~i~g~~~~e--------~~~~~~~l~~~~~e~~---------~~~~~~~~~e~~D~--~~~~~~~~ 309 (707)
T KOG0263|consen 249 RTTKPTAMVGSEQESIAGEAKRE--------INKQKVQLGLLLKEEE---------IEKKLPILLEVEDD--PNEPDNEK 309 (707)
T ss_pred ccccchhhcccccccccccchhh--------cccceeeecccccchh---------hhhcccccccCccc--cccccccc
Confidence 11111000 00110000 0000000011121100 000 0000000000 00000 00
Q ss_pred CCCCcccCCCCCccCCCCcc-c-cccCCCCCCCccceeecCCCcchhhhccccCCCcceeecCCCCCceeeecCCCcccE
Q 002494 262 LPHPSMAAGPPGFVQPSSAV-G-FLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTV 339 (915)
Q Consensus 262 ~s~~~~~~~~~~~~~~~~~~-~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~d~~~~~~ 339 (915)
...+.+.. .....+..++. + .-+-|.+|.. ..-... .+..-.+-+.-...+.+.++.-+
T Consensus 310 ~~~~~~~~-~~~~~k~~d~~~ps~d~iPlPp~~------------~~d~~~------~~~~l~d~~kr~~l~~~~lpSic 370 (707)
T KOG0263|consen 310 LKKPKKKK-LLSEEKKRDPNAPSRDRIPLPPLK------------QVDKLA------ELEALKDEQKRVKLGRNSLPSIC 370 (707)
T ss_pred cccchhhh-hhhhhhccccCCCccccCCCCccc------------chhHHH------HHHHHHHHHHHhhcCCCCCCcEE
Confidence 00000000 00000000000 0 0000001100 000000 00000001111122255667777
Q ss_pred EEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceeccc---ceee---------eecccCcccccccccCC
Q 002494 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHK---PFKV---------WDISAASMPLQNALLND 406 (915)
Q Consensus 340 ~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~---~~~~---------~~~~~~~~~~~~~~~~~ 406 (915)
..++. ....++|..||+|+. ++|.|..|..|++|.+...+....+ .+.- -++.+.........+.+
T Consensus 371 ~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 77777 578999999999998 7999999999999999864321100 0000 11112222233344789
Q ss_pred CccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCC
Q 002494 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~ 486 (915)
|.++|..+.|+|+.++|++++.|+++++|.+.+..++. .+.||..+|+++.|+|.|- +|+|++.|++.++|....
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQTARLWSTDH 524 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCceeeeeeccc
Confidence 99999999999999999999999999999999976554 6789999999999999998 899999999999999999
Q ss_pred CeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCC
Q 002494 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (915)
Q Consensus 487 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~ 566 (915)
..+++.+.+|-+.|.|+.|+|+. .|+++||.|.++|+||+.++..+..+.+|.++|.+++|||+|++|++++. +
T Consensus 525 ~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e----d 598 (707)
T KOG0263|consen 525 NKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE----D 598 (707)
T ss_pred CCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc----C
Confidence 99999999999999999999965 79999999999999999999999999999999999999999999999975 8
Q ss_pred ceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 002494 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (915)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 620 (915)
+.|.+||+.+++.+..+.+|.+ .|.++.|+.+|..|++||.|++|++||+..-
T Consensus 599 ~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 8899999999999999999977 9999999999999999999999999998753
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=338.89 Aligned_cols=282 Identities=18% Similarity=0.276 Sum_probs=264.5
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCC--CCE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--GLM 422 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd--~~~ 422 (915)
.+.+|..+.||+|++ +++||+.+|.++||+..+...+.. +.+|...|.++.|+|. +..
T Consensus 174 d~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~~~ 233 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSDLN 233 (459)
T ss_pred CCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCccc
Confidence 467899999999998 799999999999999998866543 7899999999999996 679
Q ss_pred EEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEE
Q 002494 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (915)
Q Consensus 423 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 502 (915)
+|+|+.||++++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+...+||+..|.+
T Consensus 234 lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ 308 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFS 308 (459)
T ss_pred eeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccccce
Confidence 9999999999999999876555 7889999999999999999 8999999999999999999999889999999999
Q ss_pred EEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEE
Q 002494 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (915)
Q Consensus 503 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (915)
++|++++ .++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|..+++|+. |++++|||++....+.+
T Consensus 309 iaf~~DG--SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 309 IAFQPDG--SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSELYT 382 (459)
T ss_pred eEecCCC--ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeeccccccee
Confidence 9999854 79999999999999999999999999999999999999999999999984 88899999999999999
Q ss_pred ecCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 002494 583 YSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (915)
Q Consensus 583 ~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd 660 (915)
+.+|.+ -|+.+.|+| .|.+|++++.|++++||...+..+++++.+|.+ .|.++++++|+.+|++++.|.++++|.
T Consensus 383 ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 383 IPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeecc
Confidence 999998 899999999 788999999999999999999999999999987 899999999999999999999999995
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=323.74 Aligned_cols=316 Identities=16% Similarity=0.281 Sum_probs=265.4
Q ss_pred CcccEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEE
Q 002494 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (915)
Q Consensus 335 ~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 414 (915)
.+....+.+.|..+|.+.+|+|-...++++|+.|-..++|++....-..... -.++.+.. ....-......|+++
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q---~~lrh~~~--~~~~s~~~nkdVT~L 241 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ---LVLRHCIR--EGGKSVPSNKDVTSL 241 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh---hhhhhhhh--hhcccCCccCCcceE
Confidence 4556677778999999999999877689999999999999987511110000 00000000 000011234689999
Q ss_pred EEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEec
Q 002494 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (915)
Q Consensus 415 ~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 494 (915)
+|+.+|..||+|+.||.+++|+.... .+. .+..|.++|.++.|+.+|. +|++++.|+++.+||..+|...+.+.
T Consensus 242 ~Wn~~G~~LatG~~~G~~riw~~~G~-l~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 242 DWNNDGTLLATGSEDGEARIWNKDGN-LIS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred EecCCCCeEEEeecCcEEEEEecCch-hhh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEeee
Confidence 99999999999999999999998763 333 6778999999999999999 89999999999999999999999999
Q ss_pred CCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEEC
Q 002494 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (915)
Q Consensus 495 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~ 574 (915)
-|..+-..+.|-.+ ..+++++.|+.|+++.+....+..++.+|.+.|.++.|+|.|..|++++. |+++++|+.
T Consensus 316 ~~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~TlkiWs~ 388 (524)
T KOG0273|consen 316 FHSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKIWSM 388 (524)
T ss_pred eccCCccceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEeeec
Confidence 89888777888643 47999999999999999999999999999999999999999999999985 888999999
Q ss_pred CCCeeEEEecCCCCCceEEEEEcCCC---------CEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCC
Q 002494 575 SEGAIKRTYSGFRKRSLGVVQFDTTR---------NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (915)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~sp~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 645 (915)
........+.+|.. .|..+.|+|+| ..+++++.|++|++||+..+.++..+..|.. +|.+++|+|+|+
T Consensus 389 ~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvafS~~g~ 465 (524)
T KOG0273|consen 389 GQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAFSPNGR 465 (524)
T ss_pred CCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEecCCCc
Confidence 99999999999998 89999999976 3688999999999999999999999988776 999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeecc
Q 002494 646 LLAVTTSDNGIKILANSDGVRLLRMLE 672 (915)
Q Consensus 646 ~l~s~~~dg~i~iwd~~~~~~~~~~~~ 672 (915)
++|+|+.||.|++|+.+++ ++.+.+.
T Consensus 466 ylAsGs~dg~V~iws~~~~-~l~~s~~ 491 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTKTG-KLVKSYQ 491 (524)
T ss_pred EEEecCCCCeeEeccccch-heeEeec
Confidence 9999999999999999988 5554443
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=334.71 Aligned_cols=263 Identities=19% Similarity=0.297 Sum_probs=244.8
Q ss_pred CCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcC
Q 002494 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (915)
Q Consensus 406 ~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~ 485 (915)
+...+|..+.||+|++.||||+.+|.++||+..+...+. .+.+|...|.++.|+|......++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 467789999999999999999999999999998875444 78899999999999998422269999999999999999
Q ss_pred CCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCC
Q 002494 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (915)
Q Consensus 486 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~ 565 (915)
+..++..+.+|...|..++|+|++ ++|.|++.|.+-++||+++........+|...|.+++|.|||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG--~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSG--KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCC--ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 989999999999999999999955 89999999999999999999999999999999999999999999999985
Q ss_pred CceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcC-CC
Q 002494 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EG 644 (915)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~ 644 (915)
|..-++||+++|+++..+.+|.. .|.+++|+|+|-.+|+||.|++++|||++..+.+.++..|.. -|+.|.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 77789999999999999999998 899999999999999999999999999999999999998877 899999999 89
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeccCCCCccccc
Q 002494 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681 (915)
Q Consensus 645 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 681 (915)
.+|++++.|++++||...+. .+++.+.||.+.|.++
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksLaGHe~kV~s~ 436 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSLAGHEGKVISL 436 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhhcCCccceEEE
Confidence 99999999999999999988 8999999999988876
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=297.34 Aligned_cols=291 Identities=17% Similarity=0.280 Sum_probs=262.0
Q ss_pred EEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC
Q 002494 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (915)
Q Consensus 340 ~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 418 (915)
.++|+ |...|.++.|++|.++ +++++.||.+.|||.-+....+. +.-....|..++|+|
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sP 107 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSP 107 (343)
T ss_pred EEEecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECC
Confidence 36777 9999999999999984 78999999999999988765543 233567899999999
Q ss_pred CCCEEEEEECCCeEEEEEecCC--C-ceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecC
Q 002494 419 DGLMLGVAFSKHIVHLYTYNPT--G-ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (915)
Q Consensus 419 d~~~l~s~~~dg~i~vwd~~~~--~-~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 495 (915)
.|+++|+|+-|+...||++.+. + .......+.+|.+.+.|+.|.+|+. |+|++.|.+..+||+++++.+..|.+
T Consensus 108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecC
Confidence 9999999999999999999864 1 1233346889999999999998765 89999999999999999999999999
Q ss_pred CCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECC
Q 002494 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (915)
Q Consensus 496 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~ 575 (915)
|.+.|.++.+.|. +++.+++|+-|+..++||++.+.+...+.+|...|+++.|.|+|.-+++|+. |++.++||++
T Consensus 185 H~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDlR 259 (343)
T KOG0286|consen 185 HTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDLR 259 (343)
T ss_pred CcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEeec
Confidence 9999999999996 6689999999999999999999999999999999999999999999999984 8889999999
Q ss_pred CCeeEEEecCCCC-CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCC
Q 002494 576 EGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (915)
Q Consensus 576 ~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg 654 (915)
..+.+..|..... ..|++++||..|++|++|..|.++.+||.-.++.+..+.+|.+ .|+++..+|||.-+++|+.|.
T Consensus 260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchhH
Confidence 9998888875432 2799999999999999999999999999999999999998877 899999999999999999999
Q ss_pred cEEEEE
Q 002494 655 GIKILA 660 (915)
Q Consensus 655 ~i~iwd 660 (915)
.++||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=291.89 Aligned_cols=249 Identities=16% Similarity=0.220 Sum_probs=228.9
Q ss_pred ccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEE
Q 002494 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (915)
Q Consensus 403 ~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vw 482 (915)
++++|.+.|.++.|++|++++++++.||.+.|||.-+..... .+.-....|..++|+|.|+ +++.|+-|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 378999999999999999999999999999999988876554 4455678999999999999 89999999999999
Q ss_pred EcCCC------eeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECC-CCCE
Q 002494 483 DVVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA-DGTR 555 (915)
Q Consensus 483 d~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp-~g~~ 555 (915)
++.+. +..+.+.+|.+.+.++.|..+ ..|++++-|.+..+||+++++....+.+|.+.|.+++++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC---CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99854 345678899999999999864 4799999999999999999999999999999999999999 9999
Q ss_pred EEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCc
Q 002494 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (915)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (915)
+++++. |...++||++.+.++++|.+|.. .|++++|.|+|.-|++|++|++.++||++..+.+..+.......+|
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 999986 67799999999999999999998 8999999999999999999999999999999999999887777799
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 636 ~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
++++||..|++|.+|..|.++.+||.-.+
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeecccc
Confidence 99999999999999999999999997665
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=288.50 Aligned_cols=296 Identities=23% Similarity=0.324 Sum_probs=252.0
Q ss_pred EEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC
Q 002494 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (915)
Q Consensus 340 ~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 418 (915)
..++. |++.|+.++..+.+..++++++.|.++.+|++.......- .....+.+|+..|..+..++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G--------------~~~r~~~GHsH~v~dv~~s~ 73 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG--------------VPVRRLTGHSHFVSDVVLSS 73 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC--------------ceeeeeeccceEecceEEcc
Confidence 44566 9999999999999888999999999999999987532211 11223688999999999999
Q ss_pred CCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCC--
Q 002494 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-- 496 (915)
Q Consensus 419 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-- 496 (915)
||++.++++.|+++++||+.+++..+ .+.+|...|.+++|++|+. .+++|+.|++|++|++.. .+..++..+
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g-~ck~t~~~~~~ 147 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLG-VCKYTIHEDSH 147 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecc-cEEEEEecCCC
Confidence 99999999999999999999986554 7889999999999999999 599999999999999654 455555443
Q ss_pred CCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCC
Q 002494 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (915)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~ 576 (915)
...|.+++|+|+.+..+|++++.|+++++||+++.+....+.+|.+.++.+++||||..+++|+. ++.+.+||++.
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~~ 223 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLNE 223 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEccC
Confidence 78999999999976789999999999999999999999999999999999999999999999874 88899999999
Q ss_pred CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCC-------CCCCcceEEEcCCCCEEEE
Q 002494 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-------GLPASPRLRFNKEGSLLAV 649 (915)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~v~~v~~s~~~~~l~s 649 (915)
++.++.+.... .|.+++|+|+.-.|+.+.. ..|+|||+.++..+..+.... ......+++|++||..|++
T Consensus 224 ~k~lysl~a~~--~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~ 300 (315)
T KOG0279|consen 224 GKNLYSLEAFD--IVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA 300 (315)
T ss_pred CceeEeccCCC--eEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence 99988887654 8999999998766665554 459999999998887765321 1224567899999999999
Q ss_pred EeCCCcEEEEEcC
Q 002494 650 TTSDNGIKILANS 662 (915)
Q Consensus 650 ~~~dg~i~iwd~~ 662 (915)
|..|+.|++|.+.
T Consensus 301 g~td~~irv~qv~ 313 (315)
T KOG0279|consen 301 GYTDNVIRVWQVA 313 (315)
T ss_pred eecCCcEEEEEee
Confidence 9999999999874
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=309.78 Aligned_cols=459 Identities=15% Similarity=0.219 Sum_probs=346.2
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
+.+.|.++.|+|..+. +.++-.+|.|.|||.++...+++..+ ...+|.+..|-+-.++++
T Consensus 12 rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVksfeV-------------------~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKSFEV-------------------SEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeeeeee-------------------cccchhhheeeeccceEE
Confidence 7889999999999995 55678899999999999887765322 567899999999999999
Q ss_pred EEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC-eeEEEecCCCCCEEEE
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSV 503 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~i 503 (915)
+|+.|..|+||+.++++.++ .+.+|.+.|.+++.+|..+ +++|+|.|-+|++||.+.+ .+.++|++|...|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999997766 7899999999999999999 8999999999999998865 6788999999999999
Q ss_pred EeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCC--CEEEEEeecCCCCceEEEEECCCCeeEE
Q 002494 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--TRLFSCGTSKEGESHLVEWNESEGAIKR 581 (915)
Q Consensus 504 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g--~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (915)
+|+|. |.+.+++++.|++|++|.+....+..++.+|...|+++.+-+-| .+|++++. |..+++||..+..+++
T Consensus 147 ~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 99998 44799999999999999999999999999999999999998755 58888874 8889999999999999
Q ss_pred EecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 002494 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (915)
Q Consensus 582 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 661 (915)
++.||.. .|..+.|+|.-..+++|++||+++||+..+-+...++....+ .+++++-.+.+..+++|.+.|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 899999999999999999999999999999888888776555 8999999998888999988886654 44
Q ss_pred CCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccC--ccccccCCcccCCCCCCCCcccccccCCCceeccCCcee
Q 002494 662 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS--NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPR 739 (915)
Q Consensus 662 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 739 (915)
..+ ++.-.+......+.+...... .-+++.+.... .+|..+.-.++ ......+.+....-||+|+++
T Consensus 298 gre-eP~vsMd~~gKIiwa~~~ei~---~~~~ks~~~~~ev~DgErL~LsvK-------eLgs~eiyPq~L~hsPNGrfV 366 (794)
T KOG0276|consen 298 GRE-EPAVSMDSNGKIIWAVHSEIQ---AVNLKSVGAQKEVTDGERLPLSVK-------ELGSVEIYPQTLAHSPNGRFV 366 (794)
T ss_pred cCC-CCceeecCCccEEEEcCceee---eeeceeccCcccccCCccccchhh-------hccccccchHHhccCCCCcEE
Confidence 433 333333222111111100000 00111111110 00100000000 001122333456789999999
Q ss_pred eccCCCceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEeeccceeEEeecccc--cCCCCCC------
Q 002494 740 VAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT--ERNPSGK------ 811 (915)
Q Consensus 740 a~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~--~~s~dg~------ 811 (915)
+++++|.-+||..-. ++ +.+.+.-..+.|++|....++--+++.|++++--.. .+++++.
T Consensus 367 ~VcgdGEyiIyTala------~R------nK~fG~~~eFvw~~dsne~avRes~~~vki~knfke~ksi~~~~~~e~i~g 434 (794)
T KOG0276|consen 367 VVCGDGEYIIYTALA------LR------NKAFGSGLEFVWAADSNEFAVRESNGNVKIFKNFKEHKSIRPDMSAEGIFG 434 (794)
T ss_pred EEecCccEEEEEeee------hh------hcccccceeEEEcCCCCeEEEEecCCceEEEecceeccccccccceeeecC
Confidence 999999999986431 11 114556788999999777788878888888843222 2444433
Q ss_pred --cccc---ccceeecCCCCCceeccCCCCCCCCCceeEEEEecCCCeEEEecCCe--eEEee
Q 002494 812 --ATAN---VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGK--VSLFN 867 (915)
Q Consensus 812 --~~~~---~~i~l~~~~~~~~~~~~~~~~~h~~~~I~~l~~S~dg~~L~s~sd~~--v~vw~ 867 (915)
.++. ..+.+||-.++.++.. +. -....+.|+.||.+++.|+|.. |.-++
T Consensus 435 g~Llg~~ss~~~~fydW~~~~lVrr-I~------v~~k~v~w~d~g~lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 435 GPLLGVRSSDFLCFYDWESGELVRR-IE------VTSKHVYWSDNGELVAIAGDDSFYILKFN 490 (794)
T ss_pred CceEEEEeCCeEEEEEcccceEEEE-Ee------eccceeEEecCCCEEEEEecCceeEEEec
Confidence 1111 1488888888887765 21 1223599999999999999666 44444
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=276.64 Aligned_cols=288 Identities=17% Similarity=0.270 Sum_probs=246.3
Q ss_pred CCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEe
Q 002494 358 QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY 437 (915)
Q Consensus 358 ~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~ 437 (915)
..-+|++++.|.+|++|...+|.+.++ +....+.|+.+...||++.||+++. -.|++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccC-CeeEEEEc
Confidence 345899999999999999999998865 3446778999999999999999875 57999999
Q ss_pred cCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEE
Q 002494 438 NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517 (915)
Q Consensus 438 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~ 517 (915)
++++.. ....+.+|.+.|+++.|..+|+ ++++||.||+++|||++...+.+.++ |..+|+++..+|+. ..|++|
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEee
Confidence 997653 4447889999999999999999 89999999999999999976666665 78999999999976 689999
Q ss_pred eCCCeEEEEecCCCCceeEec-CCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCC------eeEEEecCCCCCc
Q 002494 518 AIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------AIKRTYSGFRKRS 590 (915)
Q Consensus 518 ~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~------~~~~~~~~~~~~~ 590 (915)
..+|.|++||+....+...+. .....|.+++..|||++++.+.. .|..++|++-++ +++.+++.|.+ .
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~ 217 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG-H 217 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-e
Confidence 999999999998876655443 34458999999999999998763 778999998654 35677888888 7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 002494 591 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (915)
Q Consensus 591 v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 669 (915)
+..+.+||++++|+++|.|.+++||+.++. +....+.+|. ..++.++||.||.||++|+.|+.+++|++..+ +.++
T Consensus 218 il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~--rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~ 294 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ--RWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVR 294 (311)
T ss_pred EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC--ceEEeeeeccCccEEEecCCCCceeecccccC-ceee
Confidence 888899999999999999999999999987 4445555554 48999999999999999999999999999999 6778
Q ss_pred eccCCCCccc
Q 002494 670 MLEGRAMDKN 679 (915)
Q Consensus 670 ~~~~~~~~v~ 679 (915)
...+|-....
T Consensus 295 qy~gh~K~~v 304 (311)
T KOG0315|consen 295 QYQGHHKAAV 304 (311)
T ss_pred ecCCcccccE
Confidence 8888876544
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=276.46 Aligned_cols=294 Identities=21% Similarity=0.272 Sum_probs=245.7
Q ss_pred EEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcC-----CCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCC
Q 002494 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-----AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG 521 (915)
Q Consensus 447 ~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg 521 (915)
..+++|++.|+.++..+.+.. .+++++.|.++.+|++. .|..++.+.+|+..|..+..+++ |++.++++.|+
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~-~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d--g~~alS~swD~ 85 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSD-ILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD--GNFALSASWDG 85 (315)
T ss_pred eeecCCCceEEEEEeecCCCc-eEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC--CceEEeccccc
Confidence 367899999999999999777 89999999999999875 46778899999999999999874 58999999999
Q ss_pred eEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCC-CCceEEEEEcCC-
Q 002494 522 KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTT- 599 (915)
Q Consensus 522 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~sp~- 599 (915)
++++||+.+++....+.+|...|.+++|++|.+.+++++. |.+|.+|+.. |.+..++..+. ...|.|+.|+|+
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr----DkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR----DKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCC----cceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCC
Confidence 9999999999999999999999999999999999999985 7789999988 44555555443 449999999998
Q ss_pred -CCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcc
Q 002494 600 -RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678 (915)
Q Consensus 600 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 678 (915)
..+|++++.|++|++||+++.+....+.+|.+ .++.+++||||...++|+.||.+.+||+..+ +.+..+. |...|
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~--~v~t~~vSpDGslcasGgkdg~~~LwdL~~~-k~lysl~-a~~~v 236 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG--YVNTVTVSPDGSLCASGGKDGEAMLWDLNEG-KNLYSLE-AFDIV 236 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchhhccccccc--cEEEEEECCCCCEEecCCCCceEEEEEccCC-ceeEecc-CCCeE
Confidence 68899999999999999999999999888877 8999999999999999999999999999998 5566654 33333
Q ss_pred cccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCCCceeEeecCCCCCc
Q 002494 679 NRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDP 758 (915)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~~~v~iw~~~~~~~~ 758 (915)
.+ .+|+|+..+|+.+.+..|+|||+.....-
T Consensus 237 ~s-------------------------------------------------l~fspnrywL~~at~~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 237 NS-------------------------------------------------LCFSPNRYWLCAATATSIKIWDLESKAVV 267 (315)
T ss_pred ee-------------------------------------------------EEecCCceeEeeccCCceEEEeccchhhh
Confidence 32 37889888999988888999999862222
Q ss_pred cceeEeecCCc---cCCCceEEEEEecCCceEEEeeccceeEEeecc
Q 002494 759 SQIKALRLPDS---IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (915)
Q Consensus 759 ~~~~~~~~~~~---~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~ 802 (915)
..+. ..+.|. .......+++||+||+.|++|-.|+.|++|.+.
T Consensus 268 ~~l~-~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 268 EELK-LDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhcc-ccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 2221 111221 113345678999999999999999999999764
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=306.17 Aligned_cols=450 Identities=16% Similarity=0.219 Sum_probs=356.9
Q ss_pred ceeecCCCc---chhhhccccCCCcceeecCCCCCceeeecCC-------CcccEEEEec-CCCCEEEEEEcCCCCeEEE
Q 002494 295 GMDYQSADS---DHLMKRIRTGQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLN-QGSNVMSMDFHPQQQTILL 363 (915)
Q Consensus 295 ~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~g~~~~~~~~d~-------~~~~~~~~l~-h~~~V~~v~fspd~~~ll~ 363 (915)
..+|....+ +.+........+.++.-+++.-.+++.-.|. ..+....++. |+..|+++.|+..|. .|+
T Consensus 45 vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~-rla 123 (888)
T KOG0306|consen 45 VNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGT-RLA 123 (888)
T ss_pred EeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCc-eEe
Confidence 557777766 2233322233667777778877677665444 3456677776 999999999999997 589
Q ss_pred EEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCce
Q 002494 364 VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL 443 (915)
Q Consensus 364 ~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~ 443 (915)
+|+.|+.|.+||+-...-+.. +.+|...|+..-|..+.+++++.+.|+.|++||+++..+.
T Consensus 124 SGskDt~IIvwDlV~E~Gl~r-------------------L~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf 184 (888)
T KOG0306|consen 124 SGSKDTDIIVWDLVGEEGLFR-------------------LRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCF 184 (888)
T ss_pred ecCCCccEEEEEeccceeeEE-------------------eecchHHHhHHhccCCCeEEEEeccCceEEEEecccceee
Confidence 999999999999987654432 6889999999999998999999999999999999997666
Q ss_pred eeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCC----------------C--------eeE---------
Q 002494 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA----------------G--------RKQ--------- 490 (915)
Q Consensus 444 ~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~----------------~--------~~~--------- 490 (915)
. +...|.+.++.+++.+ + .+++++.|+.+++|++.. | +.+
T Consensus 185 ~---Thvd~r~Eiw~l~~~~--~--~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r 257 (888)
T KOG0306|consen 185 E---THVDHRGEIWALVLDE--K--LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDR 257 (888)
T ss_pred e---EEecccceEEEEEEec--c--eEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCccc
Confidence 5 5568999999999987 4 688999999999999810 0 000
Q ss_pred --------------------------------------------------------------------------------
Q 002494 491 -------------------------------------------------------------------------------- 490 (915)
Q Consensus 491 -------------------------------------------------------------------------------- 490 (915)
T Consensus 258 ~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~ 337 (888)
T KOG0306|consen 258 FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENT 337 (888)
T ss_pred EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCccee
Confidence
Q ss_pred -----------------------------EEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCC
Q 002494 491 -----------------------------YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG 541 (915)
Q Consensus 491 -----------------------------~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 541 (915)
..+.+|...|.+++++.+. .++..+..+.+++|+..+.++..++...
T Consensus 338 lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~---~~~~Sga~~SikiWn~~t~kciRTi~~~- 413 (888)
T KOG0306|consen 338 LVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS---ILLASGAGESIKIWNRDTLKCIRTITCG- 413 (888)
T ss_pred EEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc---eeeeecCCCcEEEEEccCcceeEEeccc-
Confidence 0011566667777776542 4555556789999999999988877643
Q ss_pred CcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC--
Q 002494 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-- 619 (915)
Q Consensus 542 ~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-- 619 (915)
.+.+..|-|.++++++|.. .|.+.+||+.+...+.+.+.|.+ .+.+++.+||+..+++||.|.+|++||..-
T Consensus 414 -y~l~~~Fvpgd~~Iv~G~k----~Gel~vfdlaS~~l~Eti~AHdg-aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~ 487 (888)
T KOG0306|consen 414 -YILASKFVPGDRYIVLGTK----NGELQVFDLASASLVETIRAHDG-AIWSISLSPDNKGFVTGSADKTVKFWDFKLVV 487 (888)
T ss_pred -cEEEEEecCCCceEEEecc----CCceEEEEeehhhhhhhhhcccc-ceeeeeecCCCCceEEecCCcEEEEEeEEEEe
Confidence 7889999999999999985 67799999999999999999998 899999999999999999999999999741
Q ss_pred ---CceE--------EEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCC
Q 002494 620 ---MNML--------TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISS 688 (915)
Q Consensus 620 ---~~~~--------~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 688 (915)
+... .+++.. ..|.++.+||||++||++--|++++||-+.+- +..-.+-||.-+|.++..+
T Consensus 488 ~~~gt~~k~lsl~~~rtLel~---ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-KFflsLYGHkLPV~smDIS---- 559 (888)
T KOG0306|consen 488 SVPGTQKKVLSLKHTRTLELE---DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKLPVLSMDIS---- 559 (888)
T ss_pred ccCcccceeeeeccceEEecc---ccEEEEEEcCCCcEEEEEeccCeEEEEEecce-eeeeeecccccceeEEecc----
Confidence 2111 122222 26899999999999999999999999999998 6777888999999998877
Q ss_pred CCCceeeecccCccccccCCcccCCCCCCCCcccccccC----CCceeccCCceeeccCC-CceeEeecCCCCCccceeE
Q 002494 689 KPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT----IDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKA 763 (915)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~s~dg~~la~~~~-~~v~iw~~~~~~~~~~~~~ 763 (915)
||.+.+.+++. |.+|++|-+.-..-+...+.+ .++.|.|+..++.+++. +.|+-||-.. -..+
T Consensus 560 --~DSklivTgSA-----DKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k---Fe~i-- 627 (888)
T KOG0306|consen 560 --PDSKLIVTGSA-----DKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK---FEEI-- 627 (888)
T ss_pred --CCcCeEEeccC-----CCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh---hhhh--
Confidence 89999999986 458999966544444445554 35677899988888887 9999998763 2222
Q ss_pred eecCCccCCCceEEEEEecCCceEEEeeccceeEEeeccc
Q 002494 764 LRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (915)
Q Consensus 764 ~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~ 803 (915)
..+.+ |...|+|++.+|+|.++++++.|.++++|....
T Consensus 628 q~L~~--H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 628 QKLDG--HHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eeecc--chheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 25666 999999999999999999999999999998765
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=273.80 Aligned_cols=279 Identities=13% Similarity=0.185 Sum_probs=230.6
Q ss_pred cEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCe--eEEEecCCCCC
Q 002494 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKR 589 (915)
Q Consensus 512 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~ 589 (915)
-+|++++.|.+||+|...++.+...+....+.|+.+...|+++.|++++ ...|++||++++. ++.+|.+|.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC-
Confidence 5899999999999999999999999998899999999999999999886 6679999998765 5899999988
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 002494 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (915)
Q Consensus 590 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 669 (915)
.|+++.|..+|+++++||+||+++|||++.....+.++.. .+|+++..+|+..-|++|..+|.|++||+.+. .+..
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc
Confidence 8999999999999999999999999999986665655544 38999999999999999999999999999876 3332
Q ss_pred eccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCC-Ccee
Q 002494 670 MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIK 748 (915)
Q Consensus 670 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-~~v~ 748 (915)
.+..... .. -......|||++++.+.. |+..
T Consensus 161 ~liPe~~------------------~~------------------------------i~sl~v~~dgsml~a~nnkG~cy 192 (311)
T KOG0315|consen 161 ELIPEDD------------------TS------------------------------IQSLTVMPDGSMLAAANNKGNCY 192 (311)
T ss_pred ccCCCCC------------------cc------------------------------eeeEEEcCCCcEEEEecCCccEE
Confidence 2221110 00 012366789999999988 9999
Q ss_pred EeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEeeccceeEEeecccccCCCCCCccccccceeecCCCCCc
Q 002494 749 SWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL 828 (915)
Q Consensus 749 iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~ 828 (915)
+|++........+..+. ...+|.+.|..+.+|||+++|+++++|.+++||+.+.- ..
T Consensus 193 vW~l~~~~~~s~l~P~~-k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~----------------------~k 249 (311)
T KOG0315|consen 193 VWRLLNHQTASELEPVH-KFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF----------------------FK 249 (311)
T ss_pred EEEccCCCccccceEhh-heecccceEEEEEECCCCcEEEeecCCceEEEEecCCc----------------------ee
Confidence 99998644444443222 12349999999999999999999999999999976651 11
Q ss_pred eeccCCCCCCCCCceeEEEEecCCCeEEEec-CCeeEEeeccCCCCC
Q 002494 829 MTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKPP 874 (915)
Q Consensus 829 ~~~~~~~~~h~~~~I~~l~~S~dg~~L~s~s-d~~v~vw~l~t~k~~ 874 (915)
+...+++ | ...++..+||.||+||+||| |+.+++|++..+|..
T Consensus 250 le~~l~g--h-~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 250 LELVLTG--H-QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred eEEEeec--C-CceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 2223666 7 99999999999999999999 999999999999865
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=288.09 Aligned_cols=310 Identities=19% Similarity=0.282 Sum_probs=270.1
Q ss_pred eecCCCCCceeeecCCCcccEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCccc
Q 002494 319 SFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMP 398 (915)
Q Consensus 319 ~~s~~g~~~~~~~~d~~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 398 (915)
.+.|.++.-....+-..+....+...|...|+.+-|+|+-. ++++++.|++|++||..+|+....
T Consensus 81 ~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------- 145 (406)
T KOG0295|consen 81 AGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------- 145 (406)
T ss_pred cCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh--------------
Confidence 34555544333333333333344445999999999999996 789999999999999999988654
Q ss_pred ccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCc
Q 002494 399 LQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (915)
Q Consensus 399 ~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~ 478 (915)
+.+|...|..++|+..|++||+++.|-.+.+||..+.. .+...+.+|...|.++.|-|.|. ++++++.|.+
T Consensus 146 -----LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~--~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~t 216 (406)
T KOG0295|consen 146 -----LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF--RCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNT 216 (406)
T ss_pred -----hhccccceeEEEEecCccEEEecCCccchhheeHHHHH--HHHHHhcCcccceeeEEEEecCC--eeeecccccc
Confidence 78999999999999999999999999999999998732 22336678999999999999998 8999999999
Q ss_pred EEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCC------
Q 002494 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD------ 552 (915)
Q Consensus 479 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~------ 552 (915)
|+.|++.+|-++.++.+|...|..++.+. ||.++++++.|.++++|-+.+..+...+..|..+|.+++|-|.
T Consensus 217 ik~We~~tg~cv~t~~~h~ewvr~v~v~~--DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i 294 (406)
T KOG0295|consen 217 IKAWECDTGYCVKTFPGHSEWVRMVRVNQ--DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSI 294 (406)
T ss_pred eeEEecccceeEEeccCchHhEEEEEecC--CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcch
Confidence 99999999999999999999999988754 6799999999999999999999888888999999999999773
Q ss_pred ---------CCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE
Q 002494 553 ---------GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (915)
Q Consensus 553 ---------g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 623 (915)
|.++.+++. |++|++||+.+|.++.++.+|.+ .|+.++|+|.|+||+++.+|+++++||++++++.
T Consensus 295 ~~at~~~~~~~~l~s~Sr----DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 295 SEATGSTNGGQVLGSGSR----DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred hhccCCCCCccEEEeecc----cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceee
Confidence 235666654 88899999999999999999998 9999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 002494 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (915)
Q Consensus 624 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 661 (915)
..+..|.+ -|++++|+.+..++++|+-|.++++|.-
T Consensus 370 k~~~ah~h--fvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 370 KTLEAHEH--FVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eccCCCcc--eeEEEecCCCCceEEeccccceeeeeec
Confidence 99998887 7999999999999999999999999963
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=300.86 Aligned_cols=488 Identities=13% Similarity=0.139 Sum_probs=338.1
Q ss_pred CCcceeecCCCCCceeeecCCC---------cccEEEEe-cCCCCEEEEEEcCCCCeEEEEEe-CCCcEEEEEcCCCcee
Q 002494 314 QSDEVSFAGVAHTPNVYSQDDL---------TKTVVRTL-NQGSNVMSMDFHPQQQTILLVGT-NVGDISLWEVGSRERL 382 (915)
Q Consensus 314 ~~~~~~~s~~g~~~~~~~~d~~---------~~~~~~~l-~h~~~V~~v~fspd~~~ll~~gs-~dg~v~iwd~~~~~~~ 382 (915)
.+.+++||++|++++...-... .-.++..+ +|+-.|+|++|+|.++|++-+|+ .|-.|.+||++.....
T Consensus 80 ~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~ 159 (1080)
T KOG1408|consen 80 PLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSG 159 (1080)
T ss_pred ceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccc
Confidence 7789999999999887763332 22233333 48889999999999997665666 3556889998876544
Q ss_pred cccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEee------------
Q 002494 383 AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID------------ 450 (915)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------------ 450 (915)
... .-...|..++|+.||.|+++++. ..|++|.++.+...+....+.
T Consensus 160 asn--------------------kiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n 218 (1080)
T KOG1408|consen 160 ASN--------------------KISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFN 218 (1080)
T ss_pred ccc--------------------ccceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccc
Confidence 432 24567999999999999999875 689999998765322111110
Q ss_pred ----------------------cc-----------------cCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEE
Q 002494 451 ----------------------AH-----------------VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (915)
Q Consensus 451 ----------------------~h-----------------~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 491 (915)
|| +...+|++.+. + +++.|+.+|.|++++..+-....
T Consensus 219 ~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~--r--~I~cgCa~g~vrlFnp~tL~y~~ 294 (1080)
T KOG1408|consen 219 EFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSS--R--LIACGCAKGMVRLFNPETLDYAG 294 (1080)
T ss_pred hhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeec--c--eEEEeeccceeeecCcchhhhcc
Confidence 11 11223444432 3 79999999999999877644333
Q ss_pred EecC-C-----------------------CCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCcee---EecCCCCcE
Q 002494 492 TFEG-H-----------------------EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWC 544 (915)
Q Consensus 492 ~~~~-~-----------------------~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i 544 (915)
++.. | -....++.|.+.. ..+.+...|..+++||++....+- .+-.|...|
T Consensus 295 Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~--~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ci 372 (1080)
T KOG1408|consen 295 TLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETT--DKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACI 372 (1080)
T ss_pred ccccccccccchhhcccccccccccCcccCCceeEEEecCCC--ceEEEEEcCceEEEEeccccccccceeeeeecccee
Confidence 3210 0 0111234455443 689999999999999998765432 333455555
Q ss_pred EEEEECC------------CCCEEEEEeecCCCCceEEEEECCCCeeEEEe-----------------------------
Q 002494 545 TMMAYSA------------DGTRLFSCGTSKEGESHLVEWNESEGAIKRTY----------------------------- 583 (915)
Q Consensus 545 ~~~~~sp------------~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~----------------------------- 583 (915)
+.+.--| .+ .+++|+. |++|++||+..+.--..+
T Consensus 373 W~Ve~~p~nv~~~~~aclp~~-cF~TCSs----D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~ 447 (1080)
T KOG1408|consen 373 WDVENLPCNVHSPTAACLPRG-CFTTCSS----DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGI 447 (1080)
T ss_pred eeeccccccccCcccccCCcc-ceeEecC----CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCc
Confidence 5554333 23 3667764 888999998752110000
Q ss_pred --------cCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcC---CCCEEEEEeC
Q 002494 584 --------SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK---EGSLLAVTTS 652 (915)
Q Consensus 584 --------~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~s~~~ 652 (915)
-+.. ..+++++.+|+|++|++|..-|+++||++.+.+....+..|.. .|.++.|+. ..++||+++.
T Consensus 448 fdka~~s~~d~r-~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHes--EilcLeyS~p~~~~kLLASasr 524 (1080)
T KOG1408|consen 448 FDKALVSTCDSR-FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHES--EILCLEYSFPVLTNKLLASASR 524 (1080)
T ss_pred ccccchhhcCcc-cceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccc--eeEEEeecCchhhhHhhhhccC
Confidence 0111 2688999999999999999999999999999888888888876 899999985 4679999999
Q ss_pred CCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccC---CC
Q 002494 653 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT---ID 729 (915)
Q Consensus 653 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~ 729 (915)
|.-|+|||+.....+++++.+|...|+.+.+... .-..+.+..+...+.-|.-.-+.-+...-++..+.+.. .+
T Consensus 525 dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~---gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYD 601 (1080)
T KOG1408|consen 525 DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACN---GLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYD 601 (1080)
T ss_pred CceEEEEecccccchhhhhcccccceeEEEEeec---CCceEEEeccCchhhheehhccccCceeccccccccccceEEE
Confidence 9999999999888899999999999987755421 12234444433222111111110011111122222222 36
Q ss_pred ceeccCCceeeccCC-CceeEeecCCCCCccceeEeecCC-ccCCCceEEEEEecCCceEEEeeccceeEEeecccccCC
Q 002494 730 GSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPD-SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 807 (915)
Q Consensus 730 ~~~s~dg~~la~~~~-~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s 807 (915)
+..-|..++++++.. .+|+||++.. +...+ .+.| +.|.+....+...|.|-||++..+|.++.++|+
T Consensus 602 m~Vdp~~k~v~t~cQDrnirif~i~s---gKq~k--~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df------ 670 (1080)
T KOG1408|consen 602 MAVDPTSKLVVTVCQDRNIRIFDIES---GKQVK--SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF------ 670 (1080)
T ss_pred eeeCCCcceEEEEecccceEEEeccc---cceee--eecccccCCCceEEEEECCCccEEEEeecCCceEEEEe------
Confidence 777888999999888 8999999986 33333 3444 347788999999999999999999999887755
Q ss_pred CCCCccccccceeecCCCCCceeccCCCCCCCCCceeEEEEecCCCeEEEec-CCeeEEeeccC
Q 002494 808 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT 870 (915)
Q Consensus 808 ~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~I~~l~~S~dg~~L~s~s-d~~v~vw~l~t 870 (915)
.+|+.+.. +.| | ++.|+.+.|++|-|+|++++ ||+|+||.+-.
T Consensus 671 ----------------~sgEcvA~-m~G--H-sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 671 ----------------VSGECVAQ-MTG--H-SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ----------------ccchhhhh-hcC--c-chheeeeeecccchhheeecCCceEEEEECch
Confidence 45555555 777 8 99999999999999999999 99999998753
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=290.69 Aligned_cols=281 Identities=18% Similarity=0.263 Sum_probs=253.1
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
....|++++|+.+|. +||+|+.||.+++|+...+... .+..|.++|.++.|+.+|+||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~l~~--------------------tl~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGNLIS--------------------TLGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecCchhhh--------------------hhhccCCceEEEEEcCCCCEEE
Confidence 346899999999997 7999999999999998765322 2677999999999999999999
Q ss_pred EEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEE
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~ 504 (915)
+++.|+++.+||..++.... .+.-|..+-.++.|-.+.. |++++.|+.|+|+.+....++.++.+|.+.|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999998876544 5556777778899977665 89999999999999999999999999999999999
Q ss_pred eecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCC---------CEEEEEeecCCCCceEEEEECC
Q 002494 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG---------TRLFSCGTSKEGESHLVEWNES 575 (915)
Q Consensus 505 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g---------~~l~~~~~~~~~~~~i~~wd~~ 575 (915)
|+|.+ .+|++++.|++++||.+........+..|...|..+.|+|+| ..+++++. ++++++||+.
T Consensus 367 ~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~ 440 (524)
T KOG0273|consen 367 WNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVE 440 (524)
T ss_pred ECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEcc
Confidence 98854 799999999999999998888888899999999999999965 35777775 8889999999
Q ss_pred CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 002494 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (915)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~ 655 (915)
.|.++.+|..|.. +|++++|+|+|+++++|+.||.|.||+.++++.++.+.+.+ .|..++|+.+|++|..+-.||.
T Consensus 441 ~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 441 SGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred CCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999999998 99999999999999999999999999999999999987765 5899999999999999999999
Q ss_pred EEEEEcC
Q 002494 656 IKILANS 662 (915)
Q Consensus 656 i~iwd~~ 662 (915)
+.+.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9999874
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=292.35 Aligned_cols=284 Identities=19% Similarity=0.317 Sum_probs=248.6
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
-+..|..+.|.|+|++ |++|+..|.+.+|+..+-.. ..++..|..+|.++.|+++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~fnF-------------------EtilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSFNF-------------------ETILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCceeeH-------------------HHHhhhhcccceeEEEccCCCEEE
Confidence 4568999999999986 67899999999999743211 112578999999999999999999
Q ss_pred EEECCCeEEEEEecCCCceeeeEEeecc-cCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEE
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 503 (915)
+|+.+|.|++|+.+-.. ++ .+.+| ...|.+++|+|.+. .|++++.||+|+|||....+....+.+|.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 99999999999987532 22 33444 48999999999888 69999999999999999988888899999999999
Q ss_pred EeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEe
Q 002494 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (915)
Q Consensus 504 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (915)
.|+|.. .+|++++.|..|++||.+++.++..+..|...|..+.|+|++++|++++. |..++++|+++.+.+..+
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHh
Confidence 999976 58999999999999999999999999999999999999999999999985 778999999999999999
Q ss_pred cCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 002494 584 SGFRKRSLGVVQFDTT-RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 584 ~~~~~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 662 (915)
++|.. .++++.|+|- ..+|.+|+.||.|..|.+...+++..+. ..+...|++++|+|-|.+|++|+.|.++++|.-.
T Consensus 303 r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 303 RGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hcchh-hheeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99999 8999999995 4567779999999999998666666554 2344489999999999999999999999999765
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=271.26 Aligned_cols=337 Identities=18% Similarity=0.238 Sum_probs=279.1
Q ss_pred EeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEe
Q 002494 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (915)
Q Consensus 448 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd 527 (915)
.+..|++.|.+++.+|+.+ +++||+.|....+|++.+|.....+.+|...|+++.|+. +|.+|+||+.+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH--DGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc--CceEEEecCCCccEEEEE
Confidence 6778999999999999777 899999999999999999999999999999999999987 558999999999999999
Q ss_pred cCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe
Q 002494 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (915)
Q Consensus 528 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 607 (915)
..++.....+......+.-+.|+|.+..|++|+. |+.+.+|.+.++...+.+.||.. ++++=.|.|+|+.++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999988888767778899999999999988874 77899999999888899999988 899999999999999999
Q ss_pred CCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCC
Q 002494 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (915)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 687 (915)
.||+|++|+..++.++..+....+ ....++.++.++..++.|+.++.+++-+..+| +.+....+ +.........
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv~~~n~-~~~~l~~~~e--- 283 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVVNCNNG-TVPELKPSQE--- 283 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccc-eEEEecCC-CCccccccch---
Confidence 999999999999999999876543 36788999999999999999999999999988 44444332 1100000000
Q ss_pred CCCCceeeecccCccccccCCcccCCCCCCCCcccccccC-CCceeccCCceeeccCC-CceeEeecCCCCCccceeEee
Q 002494 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT-IDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALR 765 (915)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~s~dg~~la~~~~-~~v~iw~~~~~~~~~~~~~~~ 765 (915)
..... ....+|.+-.+.|+++- |+|.|||+...+-...|.
T Consensus 284 -----------------------------------~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~--- 325 (399)
T KOG0296|consen 284 -----------------------------------ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE--- 325 (399)
T ss_pred -----------------------------------hhhhhhhhcccccccchhhcccccceEEEEecccchhheecc---
Confidence 00000 11234455566677666 999999998533333332
Q ss_pred cCCccCCCceEEEEEecCCceEEEeeccceeEEeecccccCCCCCCccccccceeecCCCCCceeccCCCCCCCCCceeE
Q 002494 766 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 845 (915)
Q Consensus 766 ~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~I~~ 845 (915)
|...|+.+.|-+ ..+|++++.||.|++| |.++|.++.. +.| | ...|.+
T Consensus 326 -----he~~V~~l~w~~-t~~l~t~c~~g~v~~w----------------------DaRtG~l~~~-y~G--H-~~~Il~ 373 (399)
T KOG0296|consen 326 -----HEDGVTKLKWLN-TDYLLTACANGKVRQW----------------------DARTGQLKFT-YTG--H-QMGILD 373 (399)
T ss_pred -----CCCceEEEEEcC-cchheeeccCceEEee----------------------eccccceEEE-Eec--C-chheeE
Confidence 888899999998 8889999999999877 5567777765 888 8 999999
Q ss_pred EEEecCCCeEEEec-CCeeEEeecc
Q 002494 846 IALSKNDSYVMSAS-GGKVSLFNMM 869 (915)
Q Consensus 846 l~~S~dg~~L~s~s-d~~v~vw~l~ 869 (915)
++++|++++++|+| |++.+||++.
T Consensus 374 f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 374 FALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999 9999999864
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=272.07 Aligned_cols=328 Identities=15% Similarity=0.202 Sum_probs=276.8
Q ss_pred EEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC
Q 002494 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (915)
Q Consensus 340 ~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 418 (915)
+.++. |+++|.+++.+|+.+ +++||+.|..-.+|++.+|+.... +.+|+..|+++.||.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~Fsh 116 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCSFSH 116 (399)
T ss_pred eeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEEEcc
Confidence 44555 999999999999775 899999999999999999986543 688999999999999
Q ss_pred CCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCC
Q 002494 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (915)
Q Consensus 419 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 498 (915)
||.+||||+.+|.|+||+..++.... .+...-..+.-+.|+|.+. +|+.|+.||.+.+|.+.++...+.+.+|..
T Consensus 117 dgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~~ 191 (399)
T KOG0296|consen 117 DGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHNS 191 (399)
T ss_pred CceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCCC
Confidence 99999999999999999999987655 3434556788899999888 899999999999999999888889999999
Q ss_pred CEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCC-CCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCC
Q 002494 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (915)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~ 577 (915)
++++=.|.|+ |+.++++..||+|++||..++.....+... .....++.++..+..++.|.. ++.+++-+..+|
T Consensus 192 ~ct~G~f~pd--GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~~sg 265 (399)
T KOG0296|consen 192 PCTCGEFIPD--GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNNGSG 265 (399)
T ss_pred CcccccccCC--CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEccccc
Confidence 9999999885 689999999999999999999888776533 346778889999988888764 667888888888
Q ss_pred eeEEEecC--------CCCCceEEE---EEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCE
Q 002494 578 AIKRTYSG--------FRKRSLGVV---QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (915)
Q Consensus 578 ~~~~~~~~--------~~~~~v~~~---~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 646 (915)
+.+....+ +.. .+.++ .++..-.+.|+|+-||+|.|||+...++........ .|+.+.|-+ ..+
T Consensus 266 KVv~~~n~~~~~l~~~~e~-~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~---~V~~l~w~~-t~~ 340 (399)
T KOG0296|consen 266 KVVNCNNGTVPELKPSQEE-LDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED---GVTKLKWLN-TDY 340 (399)
T ss_pred eEEEecCCCCccccccchh-hhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC---ceEEEEEcC-cch
Confidence 88777663 222 34444 445555678889999999999999887777665443 699999998 789
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCccccccc
Q 002494 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (915)
Q Consensus 647 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 726 (915)
|++++.||.|+.||..+| ++..++.||...|..
T Consensus 341 l~t~c~~g~v~~wDaRtG-~l~~~y~GH~~~Il~---------------------------------------------- 373 (399)
T KOG0296|consen 341 LLTACANGKVRQWDARTG-QLKFTYTGHQMGILD---------------------------------------------- 373 (399)
T ss_pred heeeccCceEEeeecccc-ceEEEEecCchheeE----------------------------------------------
Confidence 999999999999999999 889999999876654
Q ss_pred CCCceeccCCceeeccCC-CceeEeecC
Q 002494 727 TIDGSRLVDVKPRVAEDV-DKIKSWRIP 753 (915)
Q Consensus 727 ~~~~~~s~dg~~la~~~~-~~v~iw~~~ 753 (915)
++++||+++++++++ ++.+||.+.
T Consensus 374 ---f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 374 ---FALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ---EEEcCCCcEEEEecCCCeEEEEecC
Confidence 377899999999888 888998764
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=267.44 Aligned_cols=285 Identities=18% Similarity=0.247 Sum_probs=250.5
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEE
Q 002494 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (915)
Q Consensus 344 ~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l 423 (915)
.|++.|+.+.|+|+|. ++|+|+.|..|.+|++.....- ...+++|+++|..+.|.+|++.+
T Consensus 45 gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN------------------~~~lkgHsgAVM~l~~~~d~s~i 105 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCEN------------------FWVLKGHSGAVMELHGMRDGSHI 105 (338)
T ss_pred CCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccc------------------eeeeccccceeEeeeeccCCCEE
Confidence 4899999999999998 6899999999999997654321 12257899999999999999999
Q ss_pred EEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEE
Q 002494 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (915)
Q Consensus 424 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 503 (915)
++++.|.+|+.||.++|+..+ ..++|..-|+.+.-+.-|.. ++.+++.|+++++||+++...++++. ....++++
T Consensus 106 ~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv 180 (338)
T KOG0265|consen 106 LSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAV 180 (338)
T ss_pred EEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEEEE
Confidence 999999999999999998776 67789999999997777776 78899999999999999988888875 45678999
Q ss_pred EeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCC----Cee
Q 002494 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAI 579 (915)
Q Consensus 504 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~----~~~ 579 (915)
.|.... ..+++|+-|+.|++||++.......+.+|...|+.+..+|+|.++.+-+. +.++++||++. .++
T Consensus 181 ~f~d~s--~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 181 GFKDTS--DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred Eecccc--cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCCCce
Confidence 997644 67999999999999999999999999999999999999999999998875 88899999874 345
Q ss_pred EEEecCCCCC---ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 002494 580 KRTYSGFRKR---SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (915)
Q Consensus 580 ~~~~~~~~~~---~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i 656 (915)
+..+.++... ....++|+|+++.+-+|+.|..+++||......+..+++|.+ .|++++|+|...+|.+++.|.+|
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCcee
Confidence 7778776432 455689999999999999999999999999899999998877 89999999999999999999999
Q ss_pred EEEE
Q 002494 657 KILA 660 (915)
Q Consensus 657 ~iwd 660 (915)
.+=.
T Consensus 333 ~lge 336 (338)
T KOG0265|consen 333 YLGE 336 (338)
T ss_pred Eeec
Confidence 8643
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=274.60 Aligned_cols=294 Identities=18% Similarity=0.275 Sum_probs=262.6
Q ss_pred cccEEEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEE
Q 002494 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (915)
Q Consensus 336 ~~~~~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 414 (915)
+.+..+.+. |.+.|.|+++.|-++ .+++|+.|++++|||+.+|+...+ +.+|-..|..+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~v 199 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRGV 199 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeeee
Confidence 567777777 999999999999987 689999999999999999987754 68899999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEec
Q 002494 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (915)
Q Consensus 415 ~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 494 (915)
++|+-..|+.+++.|+.|+.||++..+.++ .+.+|-..|.|++..|.-. .|++|+.|.+++|||+++...+..+.
T Consensus 200 avS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~ 274 (460)
T KOG0285|consen 200 AVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLS 274 (460)
T ss_pred eecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEec
Confidence 999999999999999999999999988777 6789999999999999988 89999999999999999999999999
Q ss_pred CCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEEC
Q 002494 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (915)
Q Consensus 495 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~ 574 (915)
+|..+|..+.+.|.. ..+++|+.|++|++||++.++....+..|...+.+++.+|....+++++. ..|+.|++
T Consensus 275 GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-----dnik~w~~ 347 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-----DNIKQWKL 347 (460)
T ss_pred CCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-----ccceeccC
Confidence 999999999998764 47999999999999999999999999999999999999999999998874 34999999
Q ss_pred CCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcC---C---CCCCCcceEEEcCCCCEEE
Q 002494 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA---D---GGLPASPRLRFNKEGSLLA 648 (915)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~---~~~~~v~~v~~s~~~~~l~ 648 (915)
..|..+..+.+|.. .+++++...|| ++++|+++|.+.+||.++|...+.... . .....|.+.+|...|..|+
T Consensus 348 p~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 348 PEGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred Cccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence 99999999999988 89999988664 788999999999999998865554421 1 1223688899999999999
Q ss_pred EEeCCCcEEEEEcCC
Q 002494 649 VTTSDNGIKILANSD 663 (915)
Q Consensus 649 s~~~dg~i~iwd~~~ 663 (915)
+|..|.+|++|.-..
T Consensus 426 t~eadKtIk~~keDe 440 (460)
T KOG0285|consen 426 TGEADKTIKMYKEDE 440 (460)
T ss_pred eccCCcceEEEeccc
Confidence 999999999997554
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=257.50 Aligned_cols=290 Identities=21% Similarity=0.342 Sum_probs=235.7
Q ss_pred EEEec-CCCCEEEEEEcCC-CCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEc
Q 002494 340 VRTLN-QGSNVMSMDFHPQ-QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (915)
Q Consensus 340 ~~~l~-h~~~V~~v~fspd-~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 417 (915)
++.+. |.+.|+.++|+|- |. +||+|+.|..|++|+...+....-+ ..+-.+|+..|.+++|+
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck---------------~vld~~hkrsVRsvAws 70 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCK---------------TVLDDGHKRSVRSVAWS 70 (312)
T ss_pred EEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEE---------------Eeccccchheeeeeeec
Confidence 45555 8999999999998 75 8999999999999999853321110 01124699999999999
Q ss_pred CCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC---eeEEEec
Q 002494 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTFE 494 (915)
Q Consensus 418 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~ 494 (915)
|.|++||+|+.|.++.||.-.. ........++||...|.+++|+++|. +||+++.|+.|-||.+..+ .+...++
T Consensus 71 p~g~~La~aSFD~t~~Iw~k~~-~efecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 71 PHGRYLASASFDATVVIWKKED-GEFECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred CCCcEEEEeeccceEEEeecCC-CceeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 9999999999999999998765 34455668999999999999999999 8999999999999998744 5677889
Q ss_pred CCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCC---CCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEE
Q 002494 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (915)
Q Consensus 495 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~ 571 (915)
.|...|..+.|+|.. .+|++++.|.+|++|+-.. -.+...+.+|...|.+++|++.|..|++++. |+++++
T Consensus 148 ~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~I 221 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVSI 221 (312)
T ss_pred cccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceEe
Confidence 999999999999976 5999999999999997653 2356788888889999999999999999974 888999
Q ss_pred EECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC------ceEEEEcCCCCCCCcceEEEcCC-C
Q 002494 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM------NMLTTVDADGGLPASPRLRFNKE-G 644 (915)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~-~ 644 (915)
|...+. +.+.....++.+.|. ...|++++.|+.|++|.-... +.+... .+.|...|++++|+|. .
T Consensus 222 w~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~~ 293 (312)
T KOG0645|consen 222 WRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKVS 293 (312)
T ss_pred eeeccC-----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCCC
Confidence 986522 333333378889998 457999999999999987643 111111 1233348999999994 7
Q ss_pred CEEEEEeCCCcEEEEEcC
Q 002494 645 SLLAVTTSDNGIKILANS 662 (915)
Q Consensus 645 ~~l~s~~~dg~i~iwd~~ 662 (915)
+.|++|++||.|++|.+.
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 899999999999999864
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=264.36 Aligned_cols=253 Identities=16% Similarity=0.280 Sum_probs=219.1
Q ss_pred ccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEE
Q 002494 401 NALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (915)
Q Consensus 401 ~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~ 480 (915)
...+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++.... .....+++|.++|..+.|.+|+. .+++++.|++++
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVR 115 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEE
Confidence 34578899999999999999999999999999999976533 23336779999999999999999 799999999999
Q ss_pred EEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEe
Q 002494 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (915)
Q Consensus 481 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~ 560 (915)
.||+++|++++.+++|...|+++..... ...++.+++.||++++||+++......+. ...+++++.|..++..+++++
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rr-g~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sgg 193 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRR-GPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGG 193 (338)
T ss_pred EEecccceeeehhccccceeeecCcccc-CCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecc
Confidence 9999999999999999999999984432 33678899999999999999877666553 345789999999999999998
Q ss_pred ecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC----CceEEEEcCCCCCC--C
Q 002494 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN----MNMLTTVDADGGLP--A 634 (915)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~--~ 634 (915)
- |+.|++||++.+.....+.||.+ .|+.+..+|+|.++.+-+.|.++++||++. .+++..+.++.+.- .
T Consensus 194 I----dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 194 I----DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred c----cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 6 56699999999999999999999 999999999999999999999999999974 34577777765432 3
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 635 v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
...++|+|++..+.+|+.|..+++||..+.
T Consensus 269 lL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred cceeeccCCCCccccccccceEEEeecccc
Confidence 456899999999999999999999997654
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=295.27 Aligned_cols=440 Identities=16% Similarity=0.233 Sum_probs=331.4
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd 483 (915)
+...+..|..++|+|...+++++-.+|.|.+||..-+..+. .+..|.++|..++|+|+.+ +|++||.|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 34467789999999999999999999999999999987776 6789999999999999999 899999999999999
Q ss_pred cCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecC
Q 002494 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (915)
Q Consensus 484 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~ 563 (915)
..+.+++.++.+|-+.|+.+.|++.. .+|+++|+|.+|+||+..+.+++..+.+|.+.|.|..|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 99999999999999999999999865 69999999999999999999999999999999999999999999999986
Q ss_pred CCCceEEEEECCC--------C---------------------eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 002494 564 EGESHLVEWNESE--------G---------------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (915)
Q Consensus 564 ~~~~~i~~wd~~~--------~---------------------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i 614 (915)
|.+|++||+.. + -....+.||.. .|+-++|+|.-..+++|++|..|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 77899999853 1 01234678877 8999999999999999999999999
Q ss_pred EeCCCCce--EEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCc
Q 002494 615 WDMDNMNM--LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLT 692 (915)
Q Consensus 615 wd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 692 (915)
|.+...+. +.+..+|.+ .|.++-|+|..++|++.|.|++|+|||+... ..++++...++..+.++.. |.
T Consensus 233 WrmnetKaWEvDtcrgH~n--nVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrrendRFW~laah------P~ 303 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYN--NVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRRENDRFWILAAH------PE 303 (1202)
T ss_pred EEeccccceeehhhhcccC--CcceEEecCccceeEecCCCccEEEEecccc-cceeeeeccCCeEEEEEec------CC
Confidence 99986543 333445544 8999999999999999999999999999987 7788887666666665555 78
Q ss_pred eeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCCCceeEeecCCCCCccceeEeecCCccCC
Q 002494 693 INALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAA 772 (915)
Q Consensus 693 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~h~ 772 (915)
+.+++.+...| +.++.+.. ..+++.-.+..+...-+..|+-+|+.+.... ....++-+|. ..
T Consensus 304 lNLfAAgHDsG------m~VFkleR----------Erpa~~v~~n~LfYvkd~~i~~~d~~t~~d~-~v~~lr~~g~-~~ 365 (1202)
T KOG0292|consen 304 LNLFAAGHDSG------MIVFKLER----------ERPAYAVNGNGLFYVKDRFIRSYDLRTQKDT-AVASLRRPGT-LW 365 (1202)
T ss_pred cceeeeecCCc------eEEEEEcc----------cCceEEEcCCEEEEEccceEEeeeccccccc-eeEeccCCCc-cc
Confidence 88888877444 34443321 1234555566666666788999998873332 2333333332 34
Q ss_pred CceEEEEEecCCceE-EEeec-cceeEEeeccccc---------------------------------------------
Q 002494 773 SKVVRLIYTNSGLSL-LALAS-NAVHKLWKWQRTE--------------------------------------------- 805 (915)
Q Consensus 773 ~~I~~l~~s~d~~~l-~~~~~-dg~v~iW~l~~~~--------------------------------------------- 805 (915)
.++.++.++|....+ ++.+. +|.--++.++...
T Consensus 366 ~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vt 445 (1202)
T KOG0292|consen 366 QPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVT 445 (1202)
T ss_pred CCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhh
Confidence 678899999965544 33333 3555566665532
Q ss_pred ---CCC--CCCccccc----------cceeecCCCCCceeccCCCCCCCCCceeEEEEecCCCeEEEecCCeeEEeeccC
Q 002494 806 ---RNP--SGKATANV----------APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMT 870 (915)
Q Consensus 806 ---~s~--dg~~~~~~----------~i~l~~~~~~~~~~~~~~~~~h~~~~I~~l~~S~dg~~L~s~sd~~v~vw~l~t 870 (915)
..| -+.++..+ .|.++|+..+..... +. ...|.-+.||+|+.++|.-+..+|.+.+.+
T Consensus 446 kkl~~~~~~~~IF~ag~g~lll~~~~~v~lfdvQq~~~~~s-i~-----~s~vkyvvws~dm~~vAll~Kh~i~i~~kk- 518 (1202)
T KOG0292|consen 446 KKLLLPESTDDIFYAGTGNLLLRSPDSVTLFDVQQKKKVGS-IK-----VSKVKYVVWSNDMSRVALLSKHTITIADKK- 518 (1202)
T ss_pred hcccCcccccceeeccCccEEEEcCCeEEEEEeecceEEEE-Ee-----cCceeEEEEcCccchhhhcccceEEEEecc-
Confidence 000 01111111 366666655444332 22 467788899999998888888888877533
Q ss_pred CCCCCccccceeeeehhhhhh
Q 002494 871 FKPPFWHSIPRIIILLPLAWR 891 (915)
Q Consensus 871 ~k~~~~~~~~~~~~~~~~~~~ 891 (915)
.....++...+.+..-+|-
T Consensus 519 --L~l~~sihEtiriksgawd 537 (1202)
T KOG0292|consen 519 --LELLCSIHETIRIKSGAWD 537 (1202)
T ss_pred --hhheecchheeEeeeceec
Confidence 3333444444444444443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=278.98 Aligned_cols=265 Identities=18% Similarity=0.293 Sum_probs=236.4
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd 483 (915)
+..++..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+.-+ ++++|+.|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 45588999999999999999999999999999999976666 5555677999999998877 899999999999999
Q ss_pred cCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCC-CceeEecCCCCcEEEEEECC-CCCEEEEEee
Q 002494 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (915)
Q Consensus 484 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~ 561 (915)
..+++.+..|++|++.|++++.+|.. .+++++|+|-+|++||.+.. .+...+.+|.+.|.+++|+| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999999976 59999999999999999865 56678999999999999999 5678888886
Q ss_pred cCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEE
Q 002494 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (915)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 639 (915)
|++|++|.+.+..+..++++|.. .|+|+.+-+.| .+|++|++|.+++|||..+..++.++.+|.+ .|+.+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 77899999999999999999998 89999998744 6999999999999999999999999999987 899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCC
Q 002494 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPS 683 (915)
Q Consensus 640 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 683 (915)
|+|.-..|++|+.||+++||+..+- ++..++.-.-..++.+..
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~gleRvW~I~~ 277 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNYGLERVWCIAA 277 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhcCCceEEEEee
Confidence 9999999999999999999998876 556666555555665543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=301.39 Aligned_cols=286 Identities=20% Similarity=0.354 Sum_probs=249.9
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCc--eecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ 422 (915)
+...|.++.|||+|+. +++++.++.+++|+..+++ .+.. +.+|...|.+++|+||+++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeEECCCCcE
Confidence 4789999999999985 8889999999999997665 2221 4679999999999999999
Q ss_pred EEEEECCCeEEEEEecC-CCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEE
Q 002494 423 LGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (915)
Q Consensus 423 l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 501 (915)
+++++.|++|++||+.. +..++ .+.+|...|++++|+|+++ ++++|+.|++|+|||+++++++..+.+|...|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 99999999999999944 34444 7889999999999999996 899999999999999999999999999999999
Q ss_pred EEEeecCCCccEEEEEeCCCeEEEEecCCCCc--eeEecCCCC--cEEEEEECCCCCEEEEEeecCCCCceEEEEECCCC
Q 002494 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (915)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~--~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~ 577 (915)
+++|+++ ++++++++.|+.|++||+.++.. ...+..+.. .++++.|+|+++++++++. ++.+++||+..+
T Consensus 293 ~~~f~~d--~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSPD--GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEECCC--CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 9999875 48999999999999999998883 344444433 5999999999999999985 778999999999
Q ss_pred eeEEEecCCCCC--ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEe--CC
Q 002494 578 AIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT--SD 653 (915)
Q Consensus 578 ~~~~~~~~~~~~--~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--~d 653 (915)
..+..+.+|... .+.+...++.+.++++|+.|+.|++||+.++..+..+.+|. ...+..++|+|..+++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999874 34445567899999999999999999999999999998884 44889999999999999998 68
Q ss_pred CcEEEEEcC
Q 002494 654 NGIKILANS 662 (915)
Q Consensus 654 g~i~iwd~~ 662 (915)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 999999753
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=297.37 Aligned_cols=248 Identities=17% Similarity=0.361 Sum_probs=227.8
Q ss_pred CCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCC--------ce--------------------eeeEEeecccCCee
Q 002494 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--------EL--------------------RQHLEIDAHVGGVN 457 (915)
Q Consensus 406 ~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~--------~~--------------------~~~~~~~~h~~~v~ 457 (915)
.....++|..|++|++.||.|-.|..|++|.+...+ .+ .....+.+|.++|.
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence 345679999999999999999999999999987411 00 11234779999999
Q ss_pred EEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEe
Q 002494 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (915)
Q Consensus 458 ~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 537 (915)
.+.|+|+.+ +|++++.|+++++|.+.+..++..+++|..+|+.+.|+|. |.+++|++.|++.++|..+.......+
T Consensus 456 g~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~--GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 456 GCSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR--GYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred eeeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC--ceEEEecCCCceeeeeecccCCchhhh
Confidence 999999999 8999999999999999999999999999999999999985 589999999999999999998888899
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 002494 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (915)
Q Consensus 538 ~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 617 (915)
.+|-..|.|+.|+|+..++++|+. |.++++||..+|..++.|.||.+ +|.+++|||+|++|++|+.||.|.+||+
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred cccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 999999999999999999999975 78899999999999999999998 9999999999999999999999999999
Q ss_pred CCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
.+++++..+.+|.+ .|.++.|+.||..||+|+.|++|++||+..-
T Consensus 607 ~~~~~v~~l~~Ht~--ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTG--TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCCcchhhhhcccC--ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999999855 8999999999999999999999999998754
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-30 Score=257.94 Aligned_cols=473 Identities=14% Similarity=0.165 Sum_probs=337.5
Q ss_pred eecCCCcchhhhccccCCCcceeecCCCCCce---------------eeecCCCcccEEEEec-CCCCEEEEEEcCC--C
Q 002494 297 DYQSADSDHLMKRIRTGQSDEVSFAGVAHTPN---------------VYSQDDLTKTVVRTLN-QGSNVMSMDFHPQ--Q 358 (915)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~---------------~~~~d~~~~~~~~~l~-h~~~V~~v~fspd--~ 358 (915)
.|...+..+-....+.+.+.+++..|+--.++ +..||..+-..+..+. ....|.|++||+- |
T Consensus 89 l~n~ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G 168 (626)
T KOG2106|consen 89 LYNWEERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGG 168 (626)
T ss_pred EEeehhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCC
Confidence 33333433444455666777888887644433 2235555555566666 6788999999984 3
Q ss_pred CeEEEE-EeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEe
Q 002494 359 QTILLV-GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY 437 (915)
Q Consensus 359 ~~ll~~-gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~ 437 (915)
..+++. -+.+..+.+||++.+..... .......|..+.|+|.+..|+.....+.+.+|++
T Consensus 169 ~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~ 229 (626)
T KOG2106|consen 169 SLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTL 229 (626)
T ss_pred ceEEEecCCCccccchhhchhhhccCc-------------------ceeccceEEEEEeccCCCcEEEEeCCceEEEEEc
Confidence 433333 23455689999998876543 2345677889999997766666666789999999
Q ss_pred cCCCceeeeEEeeccc-CCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEE
Q 002494 438 NPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFS 516 (915)
Q Consensus 438 ~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s 516 (915)
+++...+....++++. ..|.|++|.++|+ ++||..+|.|.||+..+.+..+....|.+.|.+++...++ .|++
T Consensus 230 ~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G---tllS 303 (626)
T KOG2106|consen 230 RGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG---TLLS 303 (626)
T ss_pred cCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc---cEee
Confidence 9987776655555443 5799999999998 8999999999999988877777767999999999987643 5777
Q ss_pred EeCCCeEEEEecCCCCcee--EecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEE
Q 002494 517 TAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 594 (915)
Q Consensus 517 ~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 594 (915)
|+.|+.|..|| ..-+... .+....+.+..++-...+ |+.++. .+.|..=.+.++-. ....+|.+ ....+
T Consensus 304 GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTt----rN~iL~Gt~~~~f~-~~v~gh~d-elwgl 374 (626)
T KOG2106|consen 304 GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTT----RNFILQGTLENGFT-LTVQGHGD-ELWGL 374 (626)
T ss_pred cCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeec----cceEEEeeecCCce-EEEEeccc-ceeeE
Confidence 99999999999 3333333 333344577777643322 666653 44455555554433 34456776 78999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCC
Q 002494 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (915)
Q Consensus 595 ~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 674 (915)
+.+|+.+.+++++.|+.+++|+ ..+++.+..... ++.++.|+|.| .+|.|...|...+.|.++. .++..-..
T Consensus 375 a~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d---~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~~d- 446 (626)
T KOG2106|consen 375 ATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED---PAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIHTD- 446 (626)
T ss_pred EcCCChhheeeccCcceEEEcc--CCceeEEEEecC---ceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEEEec-
Confidence 9999999999999999999999 456666554433 67899999999 9999999999999999885 44433222
Q ss_pred CCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCC-CceeEeecC
Q 002494 675 AMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIP 753 (915)
Q Consensus 675 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~~ 753 (915)
+..+. .+.++|||.++|+++. +.|.||.++
T Consensus 447 ~~~ls-------------------------------------------------~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 447 NEQLS-------------------------------------------------VVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred CCceE-------------------------------------------------EEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 22111 2378999999999999 899999998
Q ss_pred CCCCccceeEeecCCccCCCceEEEEEecCCceEEEeeccceeEEeeccccc----------------------------
Q 002494 754 DISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTE---------------------------- 805 (915)
Q Consensus 754 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~---------------------------- 805 (915)
..... .. ..+..+..+|+.+.||+|+++|.+.+-|..+..|....-.
T Consensus 478 ~~g~~--y~---r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t 552 (626)
T KOG2106|consen 478 ANGRK--YS---RVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGT 552 (626)
T ss_pred CCCcE--EE---EeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCc
Confidence 63222 21 1223356899999999999999999999999999443211
Q ss_pred ------CCCCCCccccc----cceeecCCCCCceec--cCCCCCCCCCceeEEEEecCCCeEEEec-CCeeEEeec
Q 002494 806 ------RNPSGKATANV----APQLWQPPSGTLMTN--DINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM 868 (915)
Q Consensus 806 ------~s~dg~~~~~~----~i~l~~~~~~~~~~~--~~~~~~h~~~~I~~l~~S~dg~~L~s~s-d~~v~vw~l 868 (915)
.+..++.+|++ .+++|..+-...... .+.+ | ++.|++++|+-+...|.+.+ |..|..|++
T Consensus 553 ~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~g--h-s~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 553 DINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGG--H-SSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeecc--c-cceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 12333344444 588887644332221 1344 6 99999999999999999888 999999986
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=277.35 Aligned_cols=241 Identities=17% Similarity=0.260 Sum_probs=214.4
Q ss_pred CccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCC
Q 002494 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~ 486 (915)
-..+|..+.|.|+|+.|++|+..|.+.+|+..+- .-...+..|..+|.++.|++++. ++++|+.+|.|++|+...
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---nFEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---NFETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCcee---eHHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccch
Confidence 4568999999999999999999999999996432 11124568999999999999999 799999999999999654
Q ss_pred CeeEEEecCC-CCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCC
Q 002494 487 GRKQYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (915)
Q Consensus 487 ~~~~~~~~~~-~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~ 565 (915)
. .++.+.+| ...|++++|+|+. ..+++++.||+|+|||....+....+.+|+-.|.++.|+|....+++++.
T Consensus 170 n-nVk~~~ahh~eaIRdlafSpnD--skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk---- 242 (464)
T KOG0284|consen 170 N-NVKIIQAHHAEAIRDLAFSPND--SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK---- 242 (464)
T ss_pred h-hhHHhhHhhhhhhheeccCCCC--ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----
Confidence 4 34455554 4899999999953 68999999999999999988888888999999999999999999999874
Q ss_pred CceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcC-CC
Q 002494 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EG 644 (915)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~ 644 (915)
|+.|++||.++|.++.++.+|.. .|..+.|+|++++|+++|.|..++++|+++.+.+.++.+|.. .|+++.|+| ..
T Consensus 243 DnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~ 319 (464)
T KOG0284|consen 243 DNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNE 319 (464)
T ss_pred CceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh--hheeeccccccc
Confidence 66899999999999999999998 899999999999999999999999999998889999988876 899999999 77
Q ss_pred CEEEEEeCCCcEEEEEcC
Q 002494 645 SLLAVTTSDNGIKILANS 662 (915)
Q Consensus 645 ~~l~s~~~dg~i~iwd~~ 662 (915)
.++.+|+.||.|..|.+.
T Consensus 320 ~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 320 SLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred cceeeccCCCceEEEecc
Confidence 899999999999999876
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=283.08 Aligned_cols=422 Identities=14% Similarity=0.161 Sum_probs=315.6
Q ss_pred CCCcccEEEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCe
Q 002494 333 DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (915)
Q Consensus 333 d~~~~~~~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 411 (915)
+..+++.+.++. +.+.|+++.=+|-=. ++|.|..+|+|.+++++.++.+.+ +....+.|
T Consensus 188 Nvrt~K~v~~f~~~~s~IT~ieqsPaLD-VVaiG~~~G~ViifNlK~dkil~s-------------------Fk~d~g~V 247 (910)
T KOG1539|consen 188 NVRTGKVVYTFQEFFSRITAIEQSPALD-VVAIGLENGTVIIFNLKFDKILMS-------------------FKQDWGRV 247 (910)
T ss_pred EeccCcEEEEecccccceeEeccCCcce-EEEEeccCceEEEEEcccCcEEEE-------------------EEccccce
Confidence 344678888888 789999999999887 899999999999999999998865 22235899
Q ss_pred EEEEEcCCCCE-EEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCC--C-
Q 002494 412 NRCVWGPDGLM-LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--G- 487 (915)
Q Consensus 412 ~~~~~spd~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~--~- 487 (915)
++++|..||+. +|+|+..|.+.+||++..+.... ....|.+.|....|.|... ++++++.|+.+++|=..+ |
T Consensus 248 tslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v--~~nah~~sv~~~~fl~~ep--Vl~ta~~DnSlk~~vfD~~dg~ 323 (910)
T KOG1539|consen 248 TSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV--TRNAHYGSVTGATFLPGEP--VLVTAGADNSLKVWVFDSGDGV 323 (910)
T ss_pred eEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee--eeccccCCcccceecCCCc--eEeeccCCCceeEEEeeCCCCc
Confidence 99999999985 56666779999999998655442 3347889999999999888 899999999999885553 3
Q ss_pred -eeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCcee------------------EecCCCCcEEEEE
Q 002494 488 -RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV------------------DYDAPGNWCTMMA 548 (915)
Q Consensus 488 -~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------------------~~~~~~~~i~~~~ 548 (915)
+.++.-.||..+..++.|... .|..+.+++.|++++.+++....... .....-.+|..++
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~-~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa 402 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGS-QGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFA 402 (910)
T ss_pred chheeeccCCCCCchheeeecc-CcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeee
Confidence 445566789999999999754 67899999999999998764321100 0111222566666
Q ss_pred ECCCC----CEEEEEeecCCCCceEEEEECCCCee-EEEecCC----CCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 002494 549 YSADG----TRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGF----RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (915)
Q Consensus 549 ~sp~g----~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~----~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 619 (915)
+...- .-++++.. ++..++.|+.++... ...+... .+..+++++.++.|++.+.|...|.|-+|++.+
T Consensus 403 ~~~~RE~~W~Nv~~~h~---~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS 479 (910)
T KOG1539|consen 403 FENAREKEWDNVITAHK---GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS 479 (910)
T ss_pred cccchhhhhcceeEEec---CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc
Confidence 64421 12444443 477899999987554 3333322 223789999999999999999999999999999
Q ss_pred CceEEEEc-CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecc
Q 002494 620 MNMLTTVD-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGP 698 (915)
Q Consensus 620 ~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 698 (915)
|-...++. ...+..+|++++...-++.+++++.+|.+++||.... .+...+.-....
T Consensus 480 Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k-~l~~~l~l~~~~--------------------- 537 (910)
T KOG1539|consen 480 GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK-VLKKSLRLGSSI--------------------- 537 (910)
T ss_pred CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCc-ceeeeeccCCCc---------------------
Confidence 98888873 2233349999999999999999999999999999877 444333211100
Q ss_pred cCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCC-CceeEeecCCCCCccceeEeecCCccCCCceEE
Q 002494 699 ASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVR 777 (915)
Q Consensus 699 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~ 777 (915)
..++.......+|.+.+ -.|+++|+.+ .... ..+.| |.+.|++
T Consensus 538 -----------------------------~~iv~hr~s~l~a~~~ddf~I~vvD~~t---~kvv--R~f~g--h~nritd 581 (910)
T KOG1539|consen 538 -----------------------------TGIVYHRVSDLLAIALDDFSIRVVDVVT---RKVV--REFWG--HGNRITD 581 (910)
T ss_pred -----------------------------ceeeeeehhhhhhhhcCceeEEEEEchh---hhhh--HHhhc--cccceee
Confidence 01122233345556555 7899999874 2222 25566 9999999
Q ss_pred EEEecCCceEEEeeccceeEEeecccccCCCCCCccccccceeecCCCCCceeccCCCCCCCCCceeEEEEecCCCeEEE
Q 002494 778 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 857 (915)
Q Consensus 778 l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~I~~l~~S~dg~~L~s 857 (915)
++|||||++|++++.|++|++||+.. +.++.. +. - ..+.+++.|||+|.+|||
T Consensus 582 ~~FS~DgrWlisasmD~tIr~wDlpt----------------------~~lID~-~~---v-d~~~~sls~SPngD~LAT 634 (910)
T KOG1539|consen 582 MTFSPDGRWLISASMDSTIRTWDLPT----------------------GTLIDG-LL---V-DSPCTSLSFSPNGDFLAT 634 (910)
T ss_pred eEeCCCCcEEEEeecCCcEEEEeccC----------------------cceeee-Ee---c-CCcceeeEECCCCCEEEE
Confidence 99999999999999999999987665 333332 22 2 678899999999999999
Q ss_pred ec-C-CeeEEee
Q 002494 858 AS-G-GKVSLFN 867 (915)
Q Consensus 858 ~s-d-~~v~vw~ 867 (915)
+. | .-|.+|.
T Consensus 635 ~Hvd~~gIylWs 646 (910)
T KOG1539|consen 635 VHVDQNGIYLWS 646 (910)
T ss_pred EEecCceEEEEE
Confidence 99 7 5599995
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=249.11 Aligned_cols=289 Identities=14% Similarity=0.223 Sum_probs=247.9
Q ss_pred cccEEEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEE
Q 002494 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (915)
Q Consensus 336 ~~~~~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 414 (915)
+.+..+.+. +.++|.++.|+-||+| ..+++.|.+|++|+...|.++++ +.+|...|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceeeec
Confidence 334456666 8999999999999996 56677899999999999998875 67899999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC--eeEEE
Q 002494 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG--RKQYT 492 (915)
Q Consensus 415 ~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~ 492 (915)
+.+.|+..+++|+.|..+.+||+++|+..+ .+.+|.+.|+.+.|+.+.. .+++|+.|.++++||.++. ++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 999999999999999999999999998877 7889999999999998888 8999999999999999864 67888
Q ss_pred ecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEE
Q 002494 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (915)
Q Consensus 493 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~w 572 (915)
+......|.++.++. +.|++|+.||+++.||++.+.....+ -+.+|++++|++||+..+.++. ++++++.
T Consensus 141 ldea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrLl 210 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRLL 210 (307)
T ss_pred hhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeeec
Confidence 888888999998743 57999999999999999987655443 4568999999999999988875 7889999
Q ss_pred ECCCCeeEEEecCCCCCc-eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEe
Q 002494 573 NESEGAIKRTYSGFRKRS-LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (915)
Q Consensus 573 d~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 651 (915)
|-.+|+.+..+++|.+.. -..++++.....+++|++||.|++||+.+...+..+..+... .|++++++|.-.-++++.
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v-~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV-IVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce-eEEeeecccCccceeEec
Confidence 999999999999998742 234567777789999999999999999999999999877652 488999999777777776
Q ss_pred CCCcEEEEEc
Q 002494 652 SDNGIKILAN 661 (915)
Q Consensus 652 ~dg~i~iwd~ 661 (915)
. +.+..|.-
T Consensus 290 ~-~~~~~~~~ 298 (307)
T KOG0316|consen 290 G-HGDLFWYQ 298 (307)
T ss_pred C-Cceeceee
Confidence 4 44666653
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=264.77 Aligned_cols=293 Identities=20% Similarity=0.325 Sum_probs=256.3
Q ss_pred EeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEe
Q 002494 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (915)
Q Consensus 448 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd 527 (915)
.+.+|.+.|.|+++.|.+. +|++|+.|++++|||+.+|+...++.+|-..|..+++++.. .|+++++.|+.|+.||
T Consensus 146 Vi~gHlgWVr~vavdP~n~--wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH--pYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNE--WFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH--PYLFSAGEDKQVKCWD 221 (460)
T ss_pred hhhhccceEEEEeeCCCce--eEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC--ceEEEecCCCeeEEEe
Confidence 5679999999999999977 89999999999999999999999999999999999999865 6999999999999999
Q ss_pred cCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe
Q 002494 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (915)
Q Consensus 528 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 607 (915)
+...+.+..+.+|-+.|.+++..|.-..|++++. |.++++||+++...+..+.||.. +|..+.+.|....+++|+
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~gr----Dst~RvWDiRtr~~V~~l~GH~~-~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGR----DSTIRVWDIRTRASVHVLSGHTN-PVASVMCQPTDPQVITGS 296 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccceeEEecCC----cceEEEeeecccceEEEecCCCC-cceeEEeecCCCceEEec
Confidence 9999999999999999999999999999999985 88899999999999999999999 899999999888999999
Q ss_pred CCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCC
Q 002494 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (915)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 687 (915)
.|++|++||++.|+....+..|.. .|.+++.+|....+|+++.|. |+-|++..| +.++.+.+|+..+..+.
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkk--svral~lhP~e~~fASas~dn-ik~w~~p~g-~f~~nlsgh~~iintl~----- 367 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKK--SVRALCLHPKENLFASASPDN-IKQWKLPEG-EFLQNLSGHNAIINTLS----- 367 (460)
T ss_pred CCceEEEeeeccCceeEeeecccc--eeeEEecCCchhhhhccCCcc-ceeccCCcc-chhhccccccceeeeee-----
Confidence 999999999999999999888766 899999999999999999876 999999999 66777888887655431
Q ss_pred CCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCC-CceeEeecCCCCCccceeEeec
Q 002494 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRL 766 (915)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~~~~~~~~~~~~~~~ 766 (915)
...|| +++++++ |.+.+||......-+..+.+.-
T Consensus 368 --------------------------------------------~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vq 402 (460)
T KOG0285|consen 368 --------------------------------------------VNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQ 402 (460)
T ss_pred --------------------------------------------eccCc-eEEEcCCceEEEEEecCcCccccccccccc
Confidence 22344 4555666 9999999987555455544455
Q ss_pred CCcc-CCCceEEEEEecCCceEEEeeccceeEEeeccc
Q 002494 767 PDSI-AASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (915)
Q Consensus 767 ~~~~-h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~ 803 (915)
||.- ....|.+.+|...|..|+++..|.+|++|.-+.
T Consensus 403 pGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 403 PGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred CCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 5532 345799999999999999999999999997654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=284.05 Aligned_cols=294 Identities=17% Similarity=0.271 Sum_probs=249.4
Q ss_pred CcccEEEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CceecccceeeeecccCcccccccccCCCccCeE
Q 002494 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (915)
Q Consensus 335 ~~~~~~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 412 (915)
++...+.++. |...|.++.|.|..-.||++|+.|+.|+||++-. +.++++ +.+|..+|.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vr 262 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVR 262 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhh
Confidence 3667778887 9999999999994446999999999999999987 666654 788999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEE
Q 002494 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (915)
Q Consensus 413 ~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 492 (915)
.++|+++|..+++++.|+.+++||+++|+++.. +. ....++|+.|.|++.+ .+++|+.|+.|+.||+++++.++.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 999999999999999999999999999987653 22 2457899999999966 788999999999999999999999
Q ss_pred ecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEe-cCCCCcEEEEEECCCCCEEEEEeecCCCCceEEE
Q 002494 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (915)
Q Consensus 493 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~ 571 (915)
+..|-+.|..+.|-+.+ ..+++++.|+++++|+.+........ ........++..+|++++++.-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~~~g--~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEG--RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEccCC--ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 99999999999998754 79999999999999998876544422 233446788999999999988764 778999
Q ss_pred EECCCC---eeEEEecCCCCC-ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcC-CCCE
Q 002494 572 WNESEG---AIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSL 646 (915)
Q Consensus 572 wd~~~~---~~~~~~~~~~~~-~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~ 646 (915)
+.+... .....|.+|... .-..+.|||||.+|++|..||.+.+||.++.+++..++.|.. .+..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcce
Confidence 986532 223456777542 345689999999999999999999999999999999998865 899999999 5678
Q ss_pred EEEEeCCCcEEEEE
Q 002494 647 LAVTTSDNGIKILA 660 (915)
Q Consensus 647 l~s~~~dg~i~iwd 660 (915)
+|+|+.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-31 Score=280.49 Aligned_cols=282 Identities=24% Similarity=0.406 Sum_probs=249.2
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
|.+.|.+++|+|+++ ++++|+.+|.|++|++.+++.... +..|...+..+.|+|++++++
T Consensus 8 h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~l~ 67 (289)
T cd00200 8 HTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTYLA 67 (289)
T ss_pred cCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCEEE
Confidence 889999999999998 578888999999999998764332 356888899999999999999
Q ss_pred EEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEE
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~ 504 (915)
+++.+|.|++|++.+++... .+..|...+.++.|++++. ++++++.|+.+++||+.+++....+..|...+.+++
T Consensus 68 ~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 142 (289)
T cd00200 68 SGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142 (289)
T ss_pred EEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence 99999999999999875544 5667888999999999977 788888899999999998998888988999999999
Q ss_pred eecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEec
Q 002494 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (915)
Q Consensus 505 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (915)
|+++ +.++++++.|+.+++||++..+....+..+...+.++.|+|+++.+++++. ++.+++||++.++.+..+.
T Consensus 143 ~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 143 FSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred EcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecchh
Confidence 9886 368888888999999999988777777778889999999999999988874 7779999999999988887
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 002494 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (915)
Q Consensus 585 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd 660 (915)
.+.. .+.++.|+|++.++++++.||.|++||+.+++....+..+.. .+.+++|+|+++++++++.||.+++|+
T Consensus 217 ~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 217 GHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN--SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCC--cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 7777 899999999988888888899999999999888888886554 799999999999999999999999996
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=266.63 Aligned_cols=285 Identities=20% Similarity=0.282 Sum_probs=254.8
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd 483 (915)
+.+|..+|+.+-|+|+-..+++++.|++|++||..+++..+ .+++|...+.+++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 56799999999999999999999999999999999988755 7889999999999999998 899999999999999
Q ss_pred cCC-CeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeec
Q 002494 484 VVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (915)
Q Consensus 484 ~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~ 562 (915)
..+ .+++..+.+|...|.+++|-|.+ .++++++.|.+|+.|+++++-++..+.+|...|..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 886 56777888999999999999975 79999999999999999999999999999999999999999999999874
Q ss_pred CCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCC---------------CCEEEEEeCCCcEEEEeCCCCceEEEEc
Q 002494 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT---------------RNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (915)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~---------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 627 (915)
+.++++|-..++++...+..|.- +|-+++|.|. +.++.+++.|++|++||+.++.++.++.
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ 331 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV 331 (406)
T ss_pred ---CceEEEEEeccchhhhhhhcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe
Confidence 88899999999999889999887 8999998764 2488899999999999999999999999
Q ss_pred CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccC
Q 002494 628 ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIA 707 (915)
Q Consensus 628 ~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (915)
+|.. .|..++|+|.|+||+++.+|+++++||++++ ++.+++..|..-+..+.+... .....+++ ++
T Consensus 332 ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ah~hfvt~lDfh~~------~p~VvTGs-----Vd 397 (406)
T KOG0295|consen 332 GHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLEAHEHFVTSLDFHKT------APYVVTGS-----VD 397 (406)
T ss_pred cccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccCCCcceeEEEecCCC------CceEEecc-----cc
Confidence 9987 8999999999999999999999999999998 899999999988888776632 22444443 45
Q ss_pred CcccCCC
Q 002494 708 PTLERPD 714 (915)
Q Consensus 708 ~~v~~~~ 714 (915)
.++++|.
T Consensus 398 qt~KvwE 404 (406)
T KOG0295|consen 398 QTVKVWE 404 (406)
T ss_pred ceeeeee
Confidence 5666663
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=279.52 Aligned_cols=283 Identities=18% Similarity=0.312 Sum_probs=246.5
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
....|..++|+|.... +.++-..|.|.+||.+-+.++.. +..|.++|..++|+|++..++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 3568999999999995 56788999999999998887764 678999999999999999999
Q ss_pred EEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEE
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~ 504 (915)
+|+.|-.|+||+.++.+++. ++.||-+.|..+.|++.-+ +++++|.|.+|+||+..+++++..+.+|...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999876555 7889999999999999998 899999999999999999999999999999999999
Q ss_pred eecCCCccEEEEEeCCCeEEEEecCCCC---------------------------c--eeEecCCCCcEEEEEECCCCCE
Q 002494 505 PHHKESIQFIFSTAIDGKIKAWLYDYLG---------------------------S--RVDYDAPGNWCTMMAYSADGTR 555 (915)
Q Consensus 505 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------------------~--~~~~~~~~~~i~~~~~sp~g~~ 555 (915)
|+|.. ..++++|.|.+||+||+.... . ...+.+|...|+-++|+|.-..
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99976 589999999999999984211 0 1235678889999999999999
Q ss_pred EEEEeecCCCCceEEEEECCCCe--eEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCC
Q 002494 556 LFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (915)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (915)
+++|+. |..|++|.....+ .+.+..+|.+ .|.++-|+|..+.+++.|+|++|+|||+...+.+.++....+
T Consensus 221 iVSG~D----DRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend-- 293 (1202)
T KOG0292|consen 221 IVSGAD----DRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND-- 293 (1202)
T ss_pred EEecCC----cceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC--
Confidence 999885 6779999987554 3566789998 899999999999999999999999999999999999976554
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 002494 634 ASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 634 ~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 662 (915)
..+.++-+|..+++|.|-+ +.+.+|.++
T Consensus 294 RFW~laahP~lNLfAAgHD-sGm~VFkle 321 (1202)
T KOG0292|consen 294 RFWILAAHPELNLFAAGHD-SGMIVFKLE 321 (1202)
T ss_pred eEEEEEecCCcceeeeecC-CceEEEEEc
Confidence 7889999999998887755 446666655
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=241.98 Aligned_cols=242 Identities=17% Similarity=0.297 Sum_probs=205.9
Q ss_pred cCCCccCeEEEEEcCC-CCEEEEEECCCeEEEEEecCCCceeeeEEe-ecccCCeeEEEEecCCCeEEEEEEeCCCcEEE
Q 002494 404 LNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEI-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~v 481 (915)
+.+|.+.+..++|+|- |..||+|+.|+.|++|+...+........+ .+|+..|.+++|+|.|+ +|++|+.|.++.|
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~I 87 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVVI 87 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEEE
Confidence 5789999999999998 899999999999999999865443333233 47999999999999999 8999999999999
Q ss_pred EEcCCC--eeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCC---ceeEecCCCCcEEEEEECCCCCEE
Q 002494 482 WDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG---SRVDYDAPGNWCTMMAYSADGTRL 556 (915)
Q Consensus 482 wd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~sp~g~~l 556 (915)
|.-..+ +++.++++|...|.+++|+++ |.+|++++.|+.|-+|.+.... +...+..|...|..+.|+|....|
T Consensus 88 w~k~~~efecv~~lEGHEnEVK~Vaws~s--G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENEVKCVAWSAS--GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred eecCCCceeEEeeeeccccceeEEEEcCC--CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 985543 688899999999999999875 4899999999999999987443 344678899999999999999999
Q ss_pred EEEeecCCCCceEEEEECC---CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCC
Q 002494 557 FSCGTSKEGESHLVEWNES---EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (915)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (915)
++++. |++|++|+-. .-.+++++.+|.+ .|.+++|++.|..|+++++|++++||...+. +. +.+..
T Consensus 166 ~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr 234 (312)
T KOG0645|consen 166 FSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-GMHSR 234 (312)
T ss_pred EEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-hhccc
Confidence 99987 7789999876 3468899999998 8999999999999999999999999987622 11 11223
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 002494 634 ASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 634 ~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 662 (915)
.+..+.|. ...|++++.|+.|++|.-.
T Consensus 235 ~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 235 ALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred ceEeeeec--ccceEeccCCCEEEEEEec
Confidence 78889998 5689999999999999755
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-32 Score=264.95 Aligned_cols=270 Identities=16% Similarity=0.196 Sum_probs=229.5
Q ss_pred ccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEE
Q 002494 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (915)
Q Consensus 403 ~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vw 482 (915)
++..|...|+-+.||++|+|||+++.|.+..+|.+.....++...++.+|..+|..+.||||.+ ++++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 3678999999999999999999999999999999887777666678899999999999999999 79999999999999
Q ss_pred EcCCCeeEEEecC-CCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecC-CCCcEEEEEECCCCCEEEEEe
Q 002494 483 DVVAGRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCG 560 (915)
Q Consensus 483 d~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~sp~g~~l~~~~ 560 (915)
|+.+|.+...+.. +...+.+++|.|++ ..+++|+.|+++..||++... .....+ ....|.+++.++||+++++.+
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg--~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDG--FRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCC--ceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEe
Confidence 9999998877753 45788999999854 789999999999999987433 222222 224689999999999999887
Q ss_pred ecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEE
Q 002494 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (915)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 640 (915)
. |..|++++..+...+.....+. +|++++.|.+++++++.-.+..+++||+...+.+..+.+|....-+..-+|
T Consensus 374 ~----d~~i~l~~~e~~~dr~lise~~--~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 374 V----DKKIRLYNREARVDRGLISEEQ--PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred c----ccceeeechhhhhhhccccccC--ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 5 6679999988766655555444 799999999999999988999999999998888888888866555666677
Q ss_pred cC-CCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCC
Q 002494 641 NK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSE 684 (915)
Q Consensus 641 s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 684 (915)
.. +..++++|+.|+.|+||+..+| .++..+.||...|..+++.
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs~~vNcVswN 491 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSGHSKTVNCVSWN 491 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCC-ceeEeecCCcceeeEEecC
Confidence 66 5689999999999999999999 8999999999887766544
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-30 Score=267.23 Aligned_cols=492 Identities=14% Similarity=0.170 Sum_probs=315.6
Q ss_pred eeeecCCCcccEEEEec-CCCCEEEEEEcCCCC--eEEEEEeCCCcEEEEEcCCCceecccceeeeecccCccccccccc
Q 002494 328 NVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (915)
Q Consensus 328 ~~~~~d~~~~~~~~~l~-h~~~V~~v~fspd~~--~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (915)
++...|......+.++. |..+|+|+.|-|+.+ -.+++|+.||.|.+|.++........ .+
T Consensus 35 ~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~ 97 (764)
T KOG1063|consen 35 AIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIY-----------------TI 97 (764)
T ss_pred eEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEE-----------------ee
Confidence 33334443345666676 999999999999876 13688999999999999844333211 13
Q ss_pred CCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCce-eeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEE
Q 002494 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 405 ~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd 483 (915)
.+|...+.|+ +.......+...|+.+.+||.+..+.. .....+.....-..|+++.++.+.++++.|+.+..|.++.
T Consensus 98 ~g~~~~~~cv--~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s 175 (764)
T KOG1063|consen 98 QGHCKECVCV--VARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYS 175 (764)
T ss_pred cCcceeEEEE--EeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEec
Confidence 4455555554 333333333478999999999554411 1111111112234566777755554677788888888886
Q ss_pred cCCC--eeEEEecCCCCCEEEEEeecCCC-ccEEEEEeCCCeEEEEecCCCC-----------------c----e---e-
Q 002494 484 VVAG--RKQYTFEGHEAPVYSVCPHHKES-IQFIFSTAIDGKIKAWLYDYLG-----------------S----R---V- 535 (915)
Q Consensus 484 ~~~~--~~~~~~~~~~~~v~~i~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~-----------------~----~---~- 535 (915)
-.+. +.+..+.+|.+.|.+++|..... .-+++++|.|..||+|.+.-.. . . .
T Consensus 176 ~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~ 255 (764)
T KOG1063|consen 176 SSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQY 255 (764)
T ss_pred cCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEE
Confidence 5533 45678899999999999976543 4678999999999999764322 0 0 0
Q ss_pred ------EecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCC--eeEEEec----CCCCCceEEEEEcCCCCEE
Q 002494 536 ------DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYS----GFRKRSLGVVQFDTTRNRF 603 (915)
Q Consensus 536 ------~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~----~~~~~~v~~~~~sp~~~~l 603 (915)
.+.+|...|+++.|+|.+..|++++. |.++.+|...+. -.+.... ++.........|+|+++.+
T Consensus 256 ~is~eall~GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i 331 (764)
T KOG1063|consen 256 RISFEALLMGHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI 331 (764)
T ss_pred EEehhhhhcCcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE
Confidence 12478889999999999988888875 677999987643 3332222 1222257788899999999
Q ss_pred EEEeCCCcEEEEeCCC-CceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCce----------------
Q 002494 604 LAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVR---------------- 666 (915)
Q Consensus 604 ~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~---------------- 666 (915)
++-+..|-.++|.... ..........++...|++++|+|.|.+|.+.+.|.+-|+|-.-..+.
T Consensus 332 i~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~ 411 (764)
T KOG1063|consen 332 IAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLT 411 (764)
T ss_pred EEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccce
Confidence 9999999999999332 22222223344555999999999999999999999999986541110
Q ss_pred e-------eeeccCCCCcccccCCCC-------------CC---CCCCcee---eecccCccc-------ccc----CC-
Q 002494 667 L-------LRMLEGRAMDKNRCPSEP-------------IS---SKPLTIN---ALGPASNVS-------AAI----AP- 708 (915)
Q Consensus 667 ~-------~~~~~~~~~~v~~~~~~~-------------~~---~~~~~~~---~~~~~~~~~-------~~~----~~- 708 (915)
+ .+.+.+....|.++-..+ .. ...|++- .++.+.... ++. ..
T Consensus 412 c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et 491 (764)
T KOG1063|consen 412 CLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAET 491 (764)
T ss_pred eeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeec
Confidence 0 111111111121110000 00 0011111 111111100 000 00
Q ss_pred --cccCCCCCCCCc-----------ccccccC-----CCceeccCCceeeccCC------CceeEeecCCCCCccceeEe
Q 002494 709 --TLERPDRGPPAV-----------SISSLGT-----IDGSRLVDVKPRVAEDV------DKIKSWRIPDISDPSQIKAL 764 (915)
Q Consensus 709 --~v~~~~~~~~~~-----------~~~~~~~-----~~~~~s~dg~~la~~~~------~~v~iw~~~~~~~~~~~~~~ 764 (915)
....+.+..|+. ..+.+++ .+.+.+|+|+++|++.. .-|++|+... . .+..
T Consensus 492 ~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~---W--~~~~ 566 (764)
T KOG1063|consen 492 PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN---W--LQVQ 566 (764)
T ss_pred ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc---h--hhhh
Confidence 011112223332 2222333 25678899999999976 3679998764 2 2222
Q ss_pred ecCCccCCCceEEEEEecCCceEEEeeccceeEEeecccccCCCCCCccccccceeecCCCCCceeccCCCCCCCCCcee
Q 002494 765 RLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA 844 (915)
Q Consensus 765 ~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~I~ 844 (915)
.+++ |.-.|+.++|||||++|++.+.|+++.+|+...+.. ....... .+. | +.-|+
T Consensus 567 ~L~~--HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~------------------~e~~fa~-~k~--H-tRIIW 622 (764)
T KOG1063|consen 567 ELEG--HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK------------------DEFRFAC-LKA--H-TRIIW 622 (764)
T ss_pred eecc--cceEEEEEEECCCCcEEEEeecCceEEeeeeecccc------------------hhhhhcc-ccc--c-ceEEE
Confidence 5666 999999999999999999999999999998755321 1111111 344 7 99999
Q ss_pred EEEEecCCCeEEEec-CCeeEEeeccCC
Q 002494 845 CIALSKNDSYVMSAS-GGKVSLFNMMTF 871 (915)
Q Consensus 845 ~l~~S~dg~~L~s~s-d~~v~vw~l~t~ 871 (915)
+..|+||++++||+| |.+|++|.....
T Consensus 623 dcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 623 DCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EcccCcccceeEEecCCceEEEEeccCc
Confidence 999999999999999 999999998877
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=263.33 Aligned_cols=272 Identities=21% Similarity=0.320 Sum_probs=231.9
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
...+|+|+.+..+ .+++|..|++|+|||..+-.++.. +.+|++.|.|+.|. .+.++
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeecc--ceEEE
Confidence 3568999999542 378999999999999998776653 78999999999985 56999
Q ss_pred EEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCee---EEEecCCCCCEE
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVY 501 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~ 501 (915)
+|+.|.+|+|||+++++.++ .+-+|...|..+.|+.. ++++++.|.++.+||+..... ...+.+|...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999998877 67789999999999743 799999999999999986542 345679999999
Q ss_pred EEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEE
Q 002494 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (915)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (915)
.+.|. .+++++++.|.+|++|++.+...+..+.+|...|.|+.+ .|+++++|+. |.+|++||+..|.+++
T Consensus 325 vVdfd----~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDFD----DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eeccc----cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 99884 369999999999999999999999999999999888875 5778888874 8889999999999999
Q ss_pred EecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE---------EEEcCCCCCCCcceEEEcCCCCEEEEEeC
Q 002494 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML---------TTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (915)
Q Consensus 582 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~v~~s~~~~~l~s~~~ 652 (915)
.++||.. -|+++.| +.+.+++|+.||+|++||+..+... ..+..|. +.|..+.|. ...|++++.
T Consensus 395 vLeGHEe-LvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hs--gRVFrLQFD--~fqIvsssH 467 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS--GRVFRLQFD--EFQIISSSH 467 (499)
T ss_pred HHhchHH-hhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhcc--ceeEEEeec--ceEEEeccC
Confidence 9999998 8999999 4678999999999999999875432 2222233 378888885 577899999
Q ss_pred CCcEEEEEcCCC
Q 002494 653 DNGIKILANSDG 664 (915)
Q Consensus 653 dg~i~iwd~~~~ 664 (915)
|.+|-|||+.++
T Consensus 468 ddtILiWdFl~~ 479 (499)
T KOG0281|consen 468 DDTILIWDFLNG 479 (499)
T ss_pred CCeEEEEEcCCC
Confidence 999999999887
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=287.92 Aligned_cols=265 Identities=23% Similarity=0.383 Sum_probs=234.2
Q ss_pred CCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEc-
Q 002494 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV- 484 (915)
Q Consensus 406 ~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~- 484 (915)
.+...|.++.|+++|+.+++++.++.+++|+..+... .....+.+|...|.+++|+|++. ++++++.|+++++||+
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence 3578899999999999999999999999999977652 12225578999999999999999 8999999999999999
Q ss_pred CCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCC
Q 002494 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (915)
Q Consensus 485 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~ 564 (915)
..+..++++.+|...|++++|+|.+ +++++|+.|++|++||+++++....+..|...|++++|+++|+++++++.
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g--~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~--- 308 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDG--NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY--- 308 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCC--CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence 5568999999999999999999865 89999999999999999999999999999999999999999999999864
Q ss_pred CCceEEEEECCCCe--eEEEecCCCCC-ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCC-CCcceEEE
Q 002494 565 GESHLVEWNESEGA--IKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL-PASPRLRF 640 (915)
Q Consensus 565 ~~~~i~~wd~~~~~--~~~~~~~~~~~-~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~ 640 (915)
|+.|++||+.++. +...+.++... .+++++|+|++.++++++.|+.+++||+..+.....+..|... ..+.+...
T Consensus 309 -d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (456)
T KOG0266|consen 309 -DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL 387 (456)
T ss_pred -CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc
Confidence 8889999999999 56788887775 6899999999999999999999999999999999999887653 23445566
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCC-CCcccc
Q 002494 641 NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR-AMDKNR 680 (915)
Q Consensus 641 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~ 680 (915)
++.+.++++|+.|+.|++|+..++ ..+..+.+| ...+..
T Consensus 388 ~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h~~~~~~~ 427 (456)
T KOG0266|consen 388 STGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGHSKAAVSD 427 (456)
T ss_pred cCCCCeEEEEeCCceEEEEeCCcc-chhhhhcCCCCCceec
Confidence 789999999999999999999997 788888888 444443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-29 Score=303.34 Aligned_cols=271 Identities=14% Similarity=0.190 Sum_probs=218.7
Q ss_pred CCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCC----Cce
Q 002494 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT----GEL 443 (915)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~----~~~ 443 (915)
+|.+++|+..+....... ....+..|.+.|.+++|+|+|++||+|+.|+.|+||+.... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 677888887765432210 01113558999999999999999999999999999997542 111
Q ss_pred e-eeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCe
Q 002494 444 R-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522 (915)
Q Consensus 444 ~-~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~ 522 (915)
. ....+ .+...+.+++|++.... ++++++.||+|++||+.+++.+..+.+|...|++++|+|. ++.+|++|+.||.
T Consensus 523 ~~~~~~~-~~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVEL-ASRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEe-cccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 11122 23567999999986444 7999999999999999999999999999999999999874 3479999999999
Q ss_pred EEEEecCCCCceeEecCCCCcEEEEEEC-CCCCEEEEEeecCCCCceEEEEECCCCe-eEEEecCCCCCceEEEEEcCCC
Q 002494 523 IKAWLYDYLGSRVDYDAPGNWCTMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTR 600 (915)
Q Consensus 523 i~iwd~~~~~~~~~~~~~~~~i~~~~~s-p~g~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~sp~~ 600 (915)
|++||+++......+..+ ..+.++.|+ ++|.++++++. ++.|++||+++++ .+..+.+|.. .|.++.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999987776666543 578899995 57899998874 7889999998765 4667788887 89999997 67
Q ss_pred CEEEEEeCCCcEEEEeCCC------CceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 601 NRFLAAGDEFQIKFWDMDN------MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 601 ~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
.++++++.|++|++||+.. ...+..+.+|.. .++.++|+|++.+|++|+.||.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~--~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN--VKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC--CeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 8999999999999999974 356777777765 7889999999999999999999999997654
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.5e-29 Score=264.99 Aligned_cols=449 Identities=11% Similarity=0.125 Sum_probs=312.6
Q ss_pred CCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCC-Cceee-eEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEE
Q 002494 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT-GELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (915)
Q Consensus 405 ~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~-~~~~~-~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vw 482 (915)
..|...|.-+. +=|.+++++..++.+.||+..++ .+... ...++...+.|+++. +|..----++.|+.+|.+.+|
T Consensus 111 ~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~ 187 (910)
T KOG1539|consen 111 LLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLW 187 (910)
T ss_pred ccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEE
Confidence 34544454433 44788999999999999999884 22111 112222233376664 444211147889999999999
Q ss_pred EcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeec
Q 002494 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (915)
Q Consensus 483 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~ 562 (915)
++++++.++++.++...|+++.-+|.- ..++.|..+|+|.+++++..+.+..+....+.|++++|..||..+++.+.
T Consensus 188 Nvrt~K~v~~f~~~~s~IT~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~- 264 (910)
T KOG1539|consen 188 NVRTGKVVYTFQEFFSRITAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR- 264 (910)
T ss_pred EeccCcEEEEecccccceeEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc-
Confidence 999999999999999999999887765 58999999999999999999999998877799999999999998776653
Q ss_pred CCCCceEEEEECCCCeeEEEec-CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC--C--ceEEEEcCCCCCCCcce
Q 002494 563 KEGESHLVEWNESEGAIKRTYS-GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--M--NMLTTVDADGGLPASPR 637 (915)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~--~--~~~~~~~~~~~~~~v~~ 637 (915)
..|.+.+||++..+.+.... .|.+ .+....|-|....+++++.|+.+++|=.++ | +.++.-.+|.. +..+
T Consensus 265 --~~G~m~~wDLe~kkl~~v~~nah~~-sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~--Pp~~ 339 (910)
T KOG1539|consen 265 --SNGDMAFWDLEKKKLINVTRNAHYG-SVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA--PPSC 339 (910)
T ss_pred --CCceEEEEEcCCCeeeeeeeccccC-CcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC--Cchh
Confidence 36779999999888877776 5555 788899999999999999999988885554 3 34444455554 7889
Q ss_pred EEEc-CCCCEEEEEeCCCcEEEEEcCCCceeeeecc-CCCCc-ccccCCC-CCCCCCCceeeecccCc-----cccc---
Q 002494 638 LRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRMLE-GRAMD-KNRCPSE-PISSKPLTINALGPASN-----VSAA--- 705 (915)
Q Consensus 638 v~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~-v~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~--- 705 (915)
+.|. .+|..+.+++.|++.+.+++.... .-+.+. .|... ....... ....+-|....++.... ++..
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~-~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h 418 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISES-QSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAH 418 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHH-HhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEe
Confidence 9998 589999999999999998875431 111110 11100 0000000 00001122222222211 0000
Q ss_pred -cCCcccCCCCCCCC--------c-cc-ccccCCCceeccCCceeeccCC-CceeEeecCCCCCccceeEeec-CCccCC
Q 002494 706 -IAPTLERPDRGPPA--------V-SI-SSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRL-PDSIAA 772 (915)
Q Consensus 706 -~~~~v~~~~~~~~~--------~-~~-~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~~~~~~~~~~~~~~~-~~~~h~ 772 (915)
-......|+..... . .. .......++.++.|++.+.|.. |+|.+|++.. +..-. .+ ....|.
T Consensus 419 ~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS---Gi~r~--sf~~~~ah~ 493 (910)
T KOG1539|consen 419 KGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS---GIHRK--SFGDSPAHK 493 (910)
T ss_pred cCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc---Ceeec--ccccCcccc
Confidence 01123445443211 0 11 1122257888999999999888 9999999985 21111 22 112399
Q ss_pred CceEEEEEecCCceEEEeeccceeEEeecccccCC--------CC-------CCccccc----cceeecCCCCCceeccC
Q 002494 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN--------PS-------GKATANV----APQLWQPPSGTLMTNDI 833 (915)
Q Consensus 773 ~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s--------~d-------g~~~~~~----~i~l~~~~~~~~~~~~~ 833 (915)
++|++++...-++.+++++.+|.++.|++....+- .. ...++.+ +|+++|..+...... +
T Consensus 494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~-f 572 (910)
T KOG1539|consen 494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE-F 572 (910)
T ss_pred CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHH-h
Confidence 99999999999999999999999999999886521 00 0011111 699999877776665 7
Q ss_pred CCCCCCCCceeEEEEecCCCeEEEec-CCeeEEeeccCCCCC
Q 002494 834 NESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKPP 874 (915)
Q Consensus 834 ~~~~h~~~~I~~l~~S~dg~~L~s~s-d~~v~vw~l~t~k~~ 874 (915)
.| | ..+|++++||||||||++++ |++|++||+-|+...
T Consensus 573 ~g--h-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 573 WG--H-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred hc--c-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 77 8 99999999999999999999 999999999998765
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-29 Score=303.30 Aligned_cols=291 Identities=13% Similarity=0.151 Sum_probs=235.9
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC-CCCEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-d~~~l 423 (915)
|.+.|++++|+|+|+ ++|+|+.|+.|+||+......... .. ..... ...+...|.+++|+| ++.+|
T Consensus 482 ~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~~----------~~~~~-~~~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 482 SSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-DI----------HYPVV-ELASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred CCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-cc----------ccceE-EecccCceeeEEeccCCCCEE
Confidence 889999999999998 689999999999999864211000 00 00000 112346799999988 47899
Q ss_pred EEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEec-CCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEE
Q 002494 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (915)
Q Consensus 424 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 502 (915)
++++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|+.|++||+.++..+..+..+ ..+.+
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 999999999999999876554 6778999999999997 566 7999999999999999999988888754 67889
Q ss_pred EEeecCCCccEEEEEeCCCeEEEEecCCCC-ceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCC-----
Q 002494 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----- 576 (915)
Q Consensus 503 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~----- 576 (915)
+.|++. ++.++++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. |+.|++||++.
T Consensus 623 v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 623 VQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISGI 696 (793)
T ss_pred EEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcccc
Confidence 998653 56899999999999999998765 345667788899999997 7788888874 78899999974
Q ss_pred -CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcC-----------CCCCCCcceEEEcCCC
Q 002494 577 -GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-----------DGGLPASPRLRFNKEG 644 (915)
Q Consensus 577 -~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~~s~~~ 644 (915)
...+..+.+|.. .+.+++|+|++++|++|+.||.|++|+.....++..+.. ..+...|.+++|+|++
T Consensus 697 ~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 697 NETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred CCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 356788999887 889999999999999999999999999876655433321 1223368999999999
Q ss_pred CEEEEEeCCCcEEEEEc
Q 002494 645 SLLAVTTSDNGIKILAN 661 (915)
Q Consensus 645 ~~l~s~~~dg~i~iwd~ 661 (915)
..|++|+.||.|+||++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 99999999999999986
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-29 Score=261.64 Aligned_cols=444 Identities=13% Similarity=0.166 Sum_probs=306.7
Q ss_pred CCCCEEEEEEcCCCCeEEEEEe--CCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ 422 (915)
+...++|++||++|+ ++|+|- ..-.++||++.....+.+ +..|...|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 667999999999998 578874 455799999988765543 6789999999999999999
Q ss_pred EEEEEC--CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEE--------
Q 002494 423 LGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-------- 492 (915)
Q Consensus 423 l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-------- 492 (915)
+++.+. |-.|.+||++.+-... -..-...|..++|+.||. |++|++ ...|++|.+..++....
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998776 4467788876543222 112345799999999999 788877 47899999875531100
Q ss_pred -----e------------------------cCC-----------------CCCEEEEEeecCCCccEEEEEeCCCeEEEE
Q 002494 493 -----F------------------------EGH-----------------EAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (915)
Q Consensus 493 -----~------------------------~~~-----------------~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw 526 (915)
+ .+| ....+||+++ .++|++|+.+|.|++|
T Consensus 210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs----~r~I~cgCa~g~vrlF 285 (1080)
T KOG1408|consen 210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS----SRLIACGCAKGMVRLF 285 (1080)
T ss_pred hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee----cceEEEeeccceeeec
Confidence 0 011 1122344443 2689999999999999
Q ss_pred ecCCCCceeEec------------------------CCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEE-
Q 002494 527 LYDYLGSRVDYD------------------------APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR- 581 (915)
Q Consensus 527 d~~~~~~~~~~~------------------------~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~- 581 (915)
+..+.....++. ..-.....+.|++....+.+.. +|..+++||+++-..+.
T Consensus 286 np~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVY----ndhSlYvWDvrD~~kvgk 361 (1080)
T KOG1408|consen 286 NPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVY----NDHSLYVWDVRDVNKVGK 361 (1080)
T ss_pred CcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEE----cCceEEEEeccccccccc
Confidence 765432211110 0011345678888888877666 47789999998754322
Q ss_pred --EecCCCCCceEEEEEcCC-----------CCEEEEEeCCCcEEEEeCCCCceEEE-------------Ec--------
Q 002494 582 --TYSGFRKRSLGVVQFDTT-----------RNRFLAAGDEFQIKFWDMDNMNMLTT-------------VD-------- 627 (915)
Q Consensus 582 --~~~~~~~~~v~~~~~sp~-----------~~~l~s~~~dg~i~iwd~~~~~~~~~-------------~~-------- 627 (915)
.+-.|.. .|+.+.--|. ...|++++.|++|++||+..+..-.. ..
T Consensus 362 ~~s~lyHS~-ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~ 440 (1080)
T KOG1408|consen 362 CSSMLYHSA-CIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM 440 (1080)
T ss_pred eeeeeeccc-eeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence 2333443 4444433221 12488999999999999975211000 00
Q ss_pred --------------CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCce
Q 002494 628 --------------ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTI 693 (915)
Q Consensus 628 --------------~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 693 (915)
.-.....+.+++.+|+|++||+|..-|+++||++.+- +....++.|..+|..+.++- |+
T Consensus 441 ~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l-~~~~~~eAHesEilcLeyS~-----p~- 513 (1080)
T KOG1408|consen 441 HDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL-EYTCFMEAHESEILCLEYSF-----PV- 513 (1080)
T ss_pred hhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh-hhhhheecccceeEEEeecC-----ch-
Confidence 0011235889999999999999999999999999987 77888999998887664431 00
Q ss_pred eeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCC-CceeEeecCCCCCccceeEeecCCccCC
Q 002494 694 NALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAA 772 (915)
Q Consensus 694 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~~~~~~~~~~~~~~~~~~~h~ 772 (915)
-..++||+++. .-|.|||+.. ...+. ..+.+ |.
T Consensus 514 ----------------------------------------~~~kLLASasrdRlIHV~Dv~r---ny~l~-qtld~--HS 547 (1080)
T KOG1408|consen 514 ----------------------------------------LTNKLLASASRDRLIHVYDVKR---NYDLV-QTLDG--HS 547 (1080)
T ss_pred ----------------------------------------hhhHhhhhccCCceEEEEeccc---ccchh-hhhcc--cc
Confidence 01256677766 6779999874 22222 24555 99
Q ss_pred CceEEEEEecCC--ceEEEeeccceeEEeeccc---cc------------------CCCCCCccccc----cceeecCCC
Q 002494 773 SKVVRLIYTNSG--LSLLALASNAVHKLWKWQR---TE------------------RNPSGKATANV----APQLWQPPS 825 (915)
Q Consensus 773 ~~I~~l~~s~d~--~~l~~~~~dg~v~iW~l~~---~~------------------~s~dg~~~~~~----~i~l~~~~~ 825 (915)
..|+++.|-..| ..++++|.|..++.=.... +. .-|..+.++.+ .|++|++.+
T Consensus 548 ssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s 627 (1080)
T KOG1408|consen 548 SSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES 627 (1080)
T ss_pred cceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccc
Confidence 999999998777 6679999998765322221 11 23445555544 699999999
Q ss_pred CCceeccCCCCCCCCCceeEEEEecCCCeEEEec-CCeeEEeeccCCCCC---Cccc
Q 002494 826 GTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKPP---FWHS 878 (915)
Q Consensus 826 ~~~~~~~~~~~~h~~~~I~~l~~S~dg~~L~s~s-d~~v~vw~l~t~k~~---~~~~ 878 (915)
|++.+. ++|...|.+..-.+...|.|-|||+.. |.++.++|.-+++.. +||+
T Consensus 628 gKq~k~-FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs 683 (1080)
T KOG1408|consen 628 GKQVKS-FKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS 683 (1080)
T ss_pred cceeee-ecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc
Confidence 998887 766543478888999999999999766 999999999998764 6665
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-31 Score=244.65 Aligned_cols=289 Identities=17% Similarity=0.273 Sum_probs=252.9
Q ss_pred EEEEecCCCCEEEEEEcC---CCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEE
Q 002494 339 VVRTLNQGSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (915)
Q Consensus 339 ~~~~l~h~~~V~~v~fsp---d~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 415 (915)
++..-.|..+|..++||| +| ++|++++.||.-.+-+-++|.-+.+ +.+|.+.|++..
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~ 66 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSAT 66 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeee
Confidence 344455899999999986 67 7899999999988888888877754 789999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCe-eEEEec
Q 002494 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFE 494 (915)
Q Consensus 416 ~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~ 494 (915)
.+.+...-|+++.|-+-++||.-+|.++. .+ .|..-|.+++|+.|.+ +|++|+.++.++|||++..+ +...+.
T Consensus 67 l~~na~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ 140 (334)
T KOG0278|consen 67 LNKNATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEIS 140 (334)
T ss_pred cCchhhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhc
Confidence 99999999999999999999999998776 33 5788999999999998 79999999999999988653 566788
Q ss_pred CCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEEC
Q 002494 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (915)
Q Consensus 495 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~ 574 (915)
+|.+.|..+.|.... +.|++++.|++||+||.+++..+..+. ...+|+++.++++|++|.++. .+.|..||.
T Consensus 141 ghtg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-----gssV~Fwda 212 (334)
T KOG0278|consen 141 GHTGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-----GSSVKFWDA 212 (334)
T ss_pred CCCCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-----CceeEEecc
Confidence 999999999998654 688898999999999999998888776 356799999999999887764 445999999
Q ss_pred CCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE-cCCCCCCCcceEEEcCCCCEEEEEeCC
Q 002494 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLPASPRLRFNKEGSLLAVTTSD 653 (915)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~v~~s~~~~~l~s~~~d 653 (915)
.+-..++.+.... .|.+.+++|+...+++|++|+.++.||..+++.+..+ ++|.+ +|.++.|+|||...++|+.|
T Consensus 213 ksf~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g--pVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 213 KSFGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG--PVHCVRFSPDGELYASGSED 288 (334)
T ss_pred ccccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCC--ceEEEEECCCCceeeccCCC
Confidence 9999999888766 6899999999999999999999999999999999886 55554 99999999999999999999
Q ss_pred CcEEEEEcCCCc
Q 002494 654 NGIKILANSDGV 665 (915)
Q Consensus 654 g~i~iwd~~~~~ 665 (915)
|+|++|....++
T Consensus 289 GTirlWQt~~~~ 300 (334)
T KOG0278|consen 289 GTIRLWQTTPGK 300 (334)
T ss_pred ceEEEEEecCCC
Confidence 999999987763
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-32 Score=258.24 Aligned_cols=233 Identities=16% Similarity=0.312 Sum_probs=205.2
Q ss_pred CccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCC
Q 002494 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~ 486 (915)
....|+|+.+ |...+++|..|++|+|||.++-.+.+ .+.||++.|.|+.|. .. ++++|+.|.+|+|||+.+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 4557999988 56689999999999999998876665 678999999999994 44 899999999999999999
Q ss_pred CeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCce---eEecCCCCcEEEEEECCCCCEEEEEeecC
Q 002494 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (915)
Q Consensus 487 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~sp~g~~l~~~~~~~ 563 (915)
|+++.++-+|...|..+.|+. .++++++.|.++.+||+...... ..+.+|...|+.+.|+ .+++++++
T Consensus 267 ge~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsAS--- 337 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS--- 337 (499)
T ss_pred CchhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEec---
Confidence 999999999999999999963 48999999999999999876533 2456788899999885 45888887
Q ss_pred CCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCC
Q 002494 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (915)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 643 (915)
+|.+|++|+..+++.++++.+|.. .|-|+.+ .|+++++|+.|.+|++||+..|.++..+++|.. -|.++.|+
T Consensus 338 -gDRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd-- 409 (499)
T KOG0281|consen 338 -GDRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD-- 409 (499)
T ss_pred -CCceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec--
Confidence 488899999999999999999988 7877776 688999999999999999999999999999977 78999997
Q ss_pred CCEEEEEeCCCcEEEEEcCCCc
Q 002494 644 GSLLAVTTSDNGIKILANSDGV 665 (915)
Q Consensus 644 ~~~l~s~~~dg~i~iwd~~~~~ 665 (915)
.+.|++|+.||+|++||+..+.
T Consensus 410 ~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred CceeeeccccceEEEEeccccc
Confidence 6889999999999999998873
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=265.01 Aligned_cols=284 Identities=23% Similarity=0.381 Sum_probs=245.3
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd 483 (915)
+.+|..+|.+++|+|++++|++++.+|.+++|++.+++... .+..|...+..+.|+|+++ ++++++.||.+++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56799999999999999999999999999999999876443 5667888999999999997 799999999999999
Q ss_pred cCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecC
Q 002494 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (915)
Q Consensus 484 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~ 563 (915)
+.+++.+..+..|...+.++.|+++ +.++++++.|+.+++||+++.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9988888888889999999999886 368888888999999999987777777778888999999999888887753
Q ss_pred CCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCC
Q 002494 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (915)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 643 (915)
++.+++||+++++.+..+..+.. .+.++.|+|+++.+++++.||.|++||+..++.+..+..+.. .+.++.|+|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~ 230 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPD 230 (289)
T ss_pred --CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEcCC
Confidence 67799999999998888888776 899999999999999999999999999999888888766554 8999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccc
Q 002494 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (915)
Q Consensus 644 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 723 (915)
+.++++++.||.|++|++.++ +....+.+|...+..
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~i~~------------------------------------------- 266 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG-ECVQTLSGHTNSVTS------------------------------------------- 266 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc-eeEEEccccCCcEEE-------------------------------------------
Confidence 999998888999999999887 666666665543332
Q ss_pred cccCCCceeccCCceeeccCC-CceeEee
Q 002494 724 SLGTIDGSRLVDVKPRVAEDV-DKIKSWR 751 (915)
Q Consensus 724 ~~~~~~~~~s~dg~~la~~~~-~~v~iw~ 751 (915)
+.++++++++++++. +.+++|+
T Consensus 267 ------~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 267 ------LAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ------EEECCCCCEEEEecCCCeEEecC
Confidence 357788888888777 8999995
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-28 Score=244.40 Aligned_cols=435 Identities=13% Similarity=0.173 Sum_probs=300.0
Q ss_pred ceeecCCCcchhhhc-cccCCCcceeecCCCCCceeeecCCC-----------cccEEEEec-CCCCEEEEEEcCCCCeE
Q 002494 295 GMDYQSADSDHLMKR-IRTGQSDEVSFAGVAHTPNVYSQDDL-----------TKTVVRTLN-QGSNVMSMDFHPQQQTI 361 (915)
Q Consensus 295 ~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~g~~~~~~~~d~~-----------~~~~~~~l~-h~~~V~~v~fspd~~~l 361 (915)
..+|....-..+... ....+|.+++||+..........|.. .+......+ ..+.|..+.|+|.+..+
T Consensus 136 vriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nl 215 (626)
T KOG2106|consen 136 VRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNL 215 (626)
T ss_pred eeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcE
Confidence 557775543333322 23347888999876544333333322 122222223 45678899999999888
Q ss_pred EEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCC
Q 002494 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441 (915)
Q Consensus 362 l~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~ 441 (915)
+++++ .|.+..|+.+++.......+ + -+.....|.|++|.++|.. ++|..+|.|.||+..+.+
T Consensus 216 iit~G-k~H~~Fw~~~~~~l~k~~~~--f-------------ek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~ 278 (626)
T KOG2106|consen 216 IITCG-KGHLYFWTLRGGSLVKRQGI--F-------------EKREKKFVLCVTFLENGDV-ITGDSGGNILIWSKGTNR 278 (626)
T ss_pred EEEeC-CceEEEEEccCCceEEEeec--c-------------ccccceEEEEEEEcCCCCE-EeecCCceEEEEeCCCce
Confidence 77765 68999999998876543111 0 1223467999999999864 689999999999987655
Q ss_pred ceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCe-----------eE--------------------
Q 002494 442 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-----------KQ-------------------- 490 (915)
Q Consensus 442 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~-----------~~-------------------- 490 (915)
..+ ....|.+.|.+++...+|. |++|+.|..|..||-.-.+ .+
T Consensus 279 ~~k---~~~aH~ggv~~L~~lr~Gt---llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL 352 (626)
T KOG2106|consen 279 ISK---QVHAHDGGVFSLCMLRDGT---LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFIL 352 (626)
T ss_pred EEe---EeeecCCceEEEEEecCcc---EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEE
Confidence 444 3338999999999999997 7779999999999832110 00
Q ss_pred ---------EEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 002494 491 ---------YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (915)
Q Consensus 491 ---------~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~ 561 (915)
....+|....+.++.+|+. +.+++++.|+.+++|+ ..+.... .....++.++.|+|.| .++.++.
T Consensus 353 ~Gt~~~~f~~~v~gh~delwgla~hps~--~q~~T~gqdk~v~lW~--~~k~~wt-~~~~d~~~~~~fhpsg-~va~Gt~ 426 (626)
T KOG2106|consen 353 QGTLENGFTLTVQGHGDELWGLATHPSK--NQLLTCGQDKHVRLWN--DHKLEWT-KIIEDPAECADFHPSG-VVAVGTA 426 (626)
T ss_pred EeeecCCceEEEEecccceeeEEcCCCh--hheeeccCcceEEEcc--CCceeEE-EEecCceeEeeccCcc-eEEEeec
Confidence 1112677788888888875 6899999999999998 2222222 2345678899999999 8888775
Q ss_pred cCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eEEEEcCCCCCCCcceEEE
Q 002494 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN-MLTTVDADGGLPASPRLRF 640 (915)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~ 640 (915)
.|...+.|.++...+..... +.++++++|+|+|.+||.|+.|+.|+||.+.... .......+.+ .+|+.+.|
T Consensus 427 ----~G~w~V~d~e~~~lv~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g-s~ithLDw 499 (626)
T KOG2106|consen 427 ----TGRWFVLDTETQDLVTIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG-SPITHLDW 499 (626)
T ss_pred ----cceEEEEecccceeEEEEec--CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC-ceeEEeee
Confidence 67799999998666655544 3489999999999999999999999999997544 3333333333 59999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCc
Q 002494 641 NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720 (915)
Q Consensus 641 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 720 (915)
|+|++++.+-+.|-.|..|....- ..... +..+.|.... ...-.....+.++
T Consensus 500 S~Ds~~~~~~S~d~eiLyW~~~~~-~~~ts-------~kDvkW~t~~---c~lGF~v~g~s~~----------------- 551 (626)
T KOG2106|consen 500 SSDSQFLVSNSGDYEILYWKPSEC-KQITS-------VKDVKWATYT---CTLGFEVFGGSDG----------------- 551 (626)
T ss_pred cCCCceEEeccCceEEEEEccccC-cccce-------ecceeeeeeE---EEEEEEEecccCC-----------------
Confidence 999999999999999999943322 11111 2222222110 1111111111111
Q ss_pred ccccccCCCceeccCCceeeccCC-CceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEeeccceeEEe
Q 002494 721 SISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 799 (915)
Q Consensus 721 ~~~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW 799 (915)
......+.|.+.+++|++.+ |+|++|...-....... ....+ |.+-|++++|..+...|++.+.|.+|..|
T Consensus 552 ----t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~--he~~g--hs~~vt~V~Fl~~d~~li~tg~D~Si~qW 623 (626)
T KOG2106|consen 552 ----TDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS--HEYGG--HSSHVTNVAFLCKDSHLISTGKDTSIMQW 623 (626)
T ss_pred ----chHHHhhhhhhhhhhhccccCceEEEEccccCCCcccc--eeecc--ccceeEEEEEeeCCceEEecCCCceEEEE
Confidence 00123467788899999999 99999987642222222 23444 99999999999998889888899999999
Q ss_pred ec
Q 002494 800 KW 801 (915)
Q Consensus 800 ~l 801 (915)
++
T Consensus 624 ~l 625 (626)
T KOG2106|consen 624 RL 625 (626)
T ss_pred Ee
Confidence 75
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=250.99 Aligned_cols=457 Identities=14% Similarity=0.147 Sum_probs=322.0
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
...+|.||+||.+.+ .||.+-.+|.|.+|++..+=... ..+..+....|.+++|+ ++..|.
T Consensus 24 ~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~-----------------~vi~g~~drsIE~L~W~-e~~RLF 84 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLE-----------------PVIHGPEDRSIESLAWA-EGGRLF 84 (691)
T ss_pred eccceEEEEEeccCC-ceeeeccCCcEEEEccCCCceee-----------------EEEecCCCCceeeEEEc-cCCeEE
Confidence 467899999999997 58889999999999998853321 11123456789999999 566778
Q ss_pred EEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEE--EecCCCCCEEE
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYS 502 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~v~~ 502 (915)
+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|+.||.++.++...++... .+....++|.+
T Consensus 85 S~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 85 SSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS 159 (691)
T ss_pred eecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence 88899999999999987655 5666788999999999998 68899999988888877776544 34446689999
Q ss_pred EEeecCCCccEEEEEeCCCeEEEEecCCCCceeEec-----C---CCCcEEEEEECCCCCEEEEEeecCCCCceEEEEEC
Q 002494 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-----A---PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (915)
Q Consensus 503 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~---~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~ 574 (915)
+.|++++ ..+++|+.||.|++||..++....... . ...-|.++.|-.++ .|++|. ..|+|.+||.
T Consensus 160 lsw~~~~--~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD----S~G~V~FWd~ 232 (691)
T KOG2048|consen 160 LSWNPTG--TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD----SAGTVTFWDS 232 (691)
T ss_pred EEecCCc--cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec----CCceEEEEcc
Confidence 9998754 789999999999999999877665211 1 22357788887666 455553 4788999999
Q ss_pred CCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE--E--EEcCCCCCCCcceEEEcCCCCEEEEE
Q 002494 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML--T--TVDADGGLPASPRLRFNKEGSLLAVT 650 (915)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~--~--~~~~~~~~~~v~~v~~s~~~~~l~s~ 650 (915)
..|..++.+..|.. .|.+++..+++++++++|-|++|.-|...+.+.. . ....|.+ .|.+++..++ .+++|
T Consensus 233 ~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~h--dvrs~av~~~--~l~sg 307 (691)
T KOG2048|consen 233 IFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAH--DVRSMAVIEN--ALISG 307 (691)
T ss_pred cCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcc--cceeeeeecc--eEEec
Confidence 99999999999988 8999999999999999999999999988765432 2 2234444 8899999876 89999
Q ss_pred eCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcc---------
Q 002494 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVS--------- 721 (915)
Q Consensus 651 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------- 721 (915)
+.|..+.+-..... ....|....... ......-.|..+++..-. +..+..|.++.+...
T Consensus 308 G~d~~l~i~~s~~~-----~~~~h~~~~~~p-~~~~v~~a~~~~L~~~w~------~h~v~lwrlGS~~~~g~~~~~~Ll 375 (691)
T KOG2048|consen 308 GRDFTLAICSSREF-----KNMDHRQKNLFP-ASDRVSVAPENRLLVLWK------AHGVDLWRLGSVILQGEYNYIHLL 375 (691)
T ss_pred ceeeEEEEcccccc-----Cchhhhcccccc-ccceeecCccceEEEEec------cccccceeccCcccccccChhhhe
Confidence 99999888665431 111111000000 000000113333333322 345777877654111
Q ss_pred ---cccccC-CCceeccCCceeeccCCCceeEeecCCCCCccceeEeecCCc-cCCCceEEEEEecCCceEEEee-ccce
Q 002494 722 ---ISSLGT-IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDS-IAASKVVRLIYTNSGLSLLALA-SNAV 795 (915)
Q Consensus 722 ---~~~~~~-~~~~~s~dg~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~s~d~~~l~~~~-~dg~ 795 (915)
.+.... ...+.||||++|+.+.-...+||.+.... ......+... ...-....+.|+-|+..++.++ .+..
T Consensus 376 kl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~---~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~ 452 (691)
T KOG2048|consen 376 KLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP---NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFS 452 (691)
T ss_pred eeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc---ceeEEEeccchhhhccceeeEEEecCceEEEEecccce
Confidence 111111 46788999999999999999999998522 2221122110 1233567888998888787777 5566
Q ss_pred eEEeecccccCCCCCCccccccceeecCCCCCceeccCCCCCCCCCceeEEEEecCCCeEEEec-CCeeEEeeccCCCCC
Q 002494 796 HKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKPP 874 (915)
Q Consensus 796 v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~I~~l~~S~dg~~L~s~s-d~~v~vw~l~t~k~~ 874 (915)
+.+.++.... .+.+.. +....- -..|..++.|+||.|||+++ +|.|.+|++++.+..
T Consensus 453 le~~el~~ps--------------------~kel~~-~~~~~~-~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~ 510 (691)
T KOG2048|consen 453 LEEFELETPS--------------------FKELKS-IQSQAK-CPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESH 510 (691)
T ss_pred eEEEEecCcc--------------------hhhhhc-cccccC-CCcceeEEEcCCCCEEEEEeccceEEEEEcccceee
Confidence 6666554422 111111 111113 57889999999999999998 999999999997644
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=266.29 Aligned_cols=291 Identities=15% Similarity=0.199 Sum_probs=249.5
Q ss_pred ccccCCCccCeEEEEEcC-CCCEEEEEECCCeEEEEEecC-CCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCc
Q 002494 401 NALLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (915)
Q Consensus 401 ~~~~~~~~~~v~~~~~sp-d~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~ 478 (915)
...+.+|...|.++.|.| .+.+|++++.|+.|+||++.. +++++ .+.+|..+|.+++|+++|. .|++++.|+.
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~ 281 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRF 281 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeeccee
Confidence 345789999999999999 899999999999999999987 44455 7889999999999999999 6999999999
Q ss_pred EEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEE
Q 002494 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (915)
Q Consensus 479 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 558 (915)
+++||+++|+++..+. ....++++.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++
T Consensus 282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFis 359 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFIS 359 (503)
T ss_pred eeeeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEee
Confidence 9999999999999986 55678999999986 479999999999999999999988888889999999999999999999
Q ss_pred EeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---ceEEEEcCCCCCCCc
Q 002494 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM---NMLTTVDADGGLPAS 635 (915)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v 635 (915)
++. ++.+++|+.+.+..+.....+......++..+|+++++++-+.|+.|.++.+... .....+.+|...+.-
T Consensus 360 sSD----dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 360 SSD----DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred ecc----CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 885 6679999999887776655555557788999999999999999999999987642 333556666555566
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCC
Q 002494 636 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (915)
Q Consensus 636 ~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 713 (915)
..+.|||||.+|++|+.||.+.+||..+- +++..+..|+..+..+.+.+. ....+++.+++| .+++|
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lkah~~~ci~v~wHP~-----e~Skvat~~w~G-----~Ikiw 502 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLKAHDQPCIGVDWHPV-----EPSKVATCGWDG-----LIKIW 502 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhh-hhhhccccCCcceEEEEecCC-----CcceeEecccCc-----eeEec
Confidence 78999999999999999999999999998 889999999999988888843 345566666544 55555
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-30 Score=232.22 Aligned_cols=266 Identities=17% Similarity=0.244 Sum_probs=230.1
Q ss_pred cccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEE
Q 002494 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (915)
Q Consensus 402 ~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~v 481 (915)
..+..++++|..+.|+-||+|.++++.|.+|++|+...+..++ .+.+|...|.+++.+.|+. -|++|+.|+.+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3467899999999999999999999999999999999988777 7889999999999999998 5999999999999
Q ss_pred EEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCC--ceeEecCCCCcEEEEEECCCCCEEEEE
Q 002494 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSC 559 (915)
Q Consensus 482 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~sp~g~~l~~~ 559 (915)
||+.+|+.++.+.+|...|+.+.|+.+. ..+++|+.|.++++||-++.. ++..+......|.++..+ +..|+++
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 9999999999999999999999997643 799999999999999987653 445555566678888875 4457777
Q ss_pred eecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEE
Q 002494 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (915)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 639 (915)
+. ||+++.||++.|....-+-+| +|++++|+++++..++++.|+++++.|-.+|+.+..+.+|.....-..++
T Consensus 162 S~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 162 SV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred cc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence 64 888999999999887766665 89999999999999999999999999999999999999997765566788
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCc-ccccCCC
Q 002494 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMD-KNRCPSE 684 (915)
Q Consensus 640 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~ 684 (915)
++.....+++|++||.|.+||+.+. ..+..+..+... +..+...
T Consensus 235 l~qsdthV~sgSEDG~Vy~wdLvd~-~~~sk~~~~~~v~v~dl~~h 279 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGKVYFWDLVDE-TQISKLSVVSTVIVTDLSCH 279 (307)
T ss_pred ecccceeEEeccCCceEEEEEeccc-eeeeeeccCCceeEEeeecc
Confidence 8888899999999999999999988 566666655554 4555555
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=244.12 Aligned_cols=294 Identities=18% Similarity=0.328 Sum_probs=243.7
Q ss_pred cCCCcccEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCe
Q 002494 332 QDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (915)
Q Consensus 332 ~d~~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 411 (915)
....+.+....+.|.+.|.++... ++ .+.+|++||.+++||........ +.+|.++|
T Consensus 91 ~~~~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~Gk~~~~--------------------~~Ght~~i 147 (423)
T KOG0313|consen 91 EAITAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKGKSIKT--------------------IVGHTGPI 147 (423)
T ss_pred EecCCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecCCceEEE--------------------EecCCcce
Confidence 344566778888899999999998 44 46799999999999987643322 57899999
Q ss_pred EEEEEcCCC---CEEEEEECCCeEEEEEecCCCce-eeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcC--
Q 002494 412 NRCVWGPDG---LMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-- 485 (915)
Q Consensus 412 ~~~~~spd~---~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~-- 485 (915)
.+++|.-.. ..|++++.|.++++|.++.+... .......||...|.+++..++|. .+++|+.|.++++|+..
T Consensus 148 k~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~ 225 (423)
T KOG0313|consen 148 KSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETD 225 (423)
T ss_pred eeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCC
Confidence 998886543 35999999999999999887543 22223459999999999999999 79999999999999932
Q ss_pred -----------------------CCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCC
Q 002494 486 -----------------------AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN 542 (915)
Q Consensus 486 -----------------------~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 542 (915)
++.++.++.+|..+|.++.|.+. ..+++++.|.+|+.||+.+++....+.. ..
T Consensus 226 ~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg~~~~~~~~-~k 301 (423)
T KOG0313|consen 226 EEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETGGLKSTLTT-NK 301 (423)
T ss_pred ccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC---CceEeecccceEEEEEeecccceeeeec-Cc
Confidence 11346678899999999999863 5899999999999999999888776653 45
Q ss_pred cEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCe---eEEEecCCCCCceEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Q 002494 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMD 618 (915)
Q Consensus 543 ~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~ 618 (915)
.+.++..+|..++|++++. +..|++||.+++. ...+|.+|.+ .|.++.|+|... .|++|+.||++++||++
T Consensus 302 sl~~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 302 SLNCISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred ceeEeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 7899999999999999886 6779999998753 4567899998 999999999765 56779999999999999
Q ss_pred CCc-eEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 002494 619 NMN-MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 619 ~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 662 (915)
+.+ ++..+.+|.. .|.++.|+. +..|++||.|++|+|+.-.
T Consensus 377 S~k~plydI~~h~D--Kvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 377 STKAPLYDIAGHND--KVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCCcceeeccCCc--eEEEEeccC-CceEEeccCcceEEEeccc
Confidence 877 8898888866 899999985 6789999999999998643
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-29 Score=251.71 Aligned_cols=286 Identities=18% Similarity=0.261 Sum_probs=243.2
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
..+.|.+++|||..++=+|+.+ .-.+.||+..+...... +......|+++.|..||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 4678999999998776555543 46899999887665542 344677899999999999999
Q ss_pred EEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEE
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~ 504 (915)
+|+..|.|+|+|+++...++ .+.+|..+|..+.|+|+++. .+++|+.|+.+++||+.+......+.+|.+.|.+.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999966633344 57799999999999999987 899999999999999999887668999999999999
Q ss_pred eecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCe-eEEEe
Q 002494 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTY 583 (915)
Q Consensus 505 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~ 583 (915)
|+|.. +.+++||+.||.|++||++.......--.|+.+|.++.+-|.|..+++++ .+.+++||+.+|. .+..+
T Consensus 161 ~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 99874 47999999999999999998865555556899999999999999999986 4569999998554 44555
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 002494 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (915)
Q Consensus 584 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 663 (915)
..|.. .|+|+++..++..|++++-|+.|++||+.+.+.+..+...+ +|.+++.+|++..++.|..||.+-+-+...
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeeehhhc
Confidence 55777 89999999999999999999999999999999999987765 799999999999999999999887765444
Q ss_pred C
Q 002494 664 G 664 (915)
Q Consensus 664 ~ 664 (915)
+
T Consensus 311 k 311 (487)
T KOG0310|consen 311 K 311 (487)
T ss_pred c
Confidence 3
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=252.91 Aligned_cols=294 Identities=17% Similarity=0.219 Sum_probs=250.6
Q ss_pred CCCcccEEEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCe
Q 002494 333 DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (915)
Q Consensus 333 d~~~~~~~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 411 (915)
+.+|......+. |.+.|..+.|-++.. .|++|+.|..|++|++..++.-. ...+.+..+.|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCc
Confidence 344555555666 899999999999976 48999999999999998876321 12256778899
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEE
Q 002494 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (915)
Q Consensus 412 ~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 491 (915)
+.+.|.++++++++++.|+.+++|++...+... ++.+|++.|+++.|..... .+++|+.|.+|+.||+....+..
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999987665 7889999999999987776 59999999999999999988887
Q ss_pred EecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEE
Q 002494 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (915)
Q Consensus 492 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~ 571 (915)
++- ....+..|+.++ ..+++|..|++|++||.+..........++ .|+++..+++|..+++++. |.++.+
T Consensus 298 t~l-~~S~cnDI~~~~----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCSI----SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEecc----eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 765 344566666542 468999999999999999988888877655 8999999999999999875 677999
Q ss_pred EECCCCeeEEEecCCC---CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEE
Q 002494 572 WNESEGAIKRTYSGFR---KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (915)
Q Consensus 572 wd~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 648 (915)
.|+++.+....+.... ....+.+.|||++.|+++||.||.|+||++.++++...+........|++++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 9999998888776432 1257789999999999999999999999999999999998877655799999999999999
Q ss_pred EEeCCCcEEEE
Q 002494 649 VTTSDNGIKIL 659 (915)
Q Consensus 649 s~~~dg~i~iw 659 (915)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999999
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-29 Score=231.31 Aligned_cols=288 Identities=12% Similarity=0.155 Sum_probs=239.2
Q ss_pred EecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCC
Q 002494 342 TLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (915)
Q Consensus 342 ~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 421 (915)
...|..+++.+.++.+|. ||++++.|.+..||-..+|+.+.+ +.+|.+.|+|+..+-+.+
T Consensus 6 l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s~ 65 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDSK 65 (327)
T ss_pred cccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCcc
Confidence 334999999999999998 899999999999999999998865 689999999999999999
Q ss_pred EEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEE----eCCCcEEEEEcC-------CCeeE
Q 002494 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC----GDDKMIKVWDVV-------AGRKQ 490 (915)
Q Consensus 422 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~----~~d~~i~vwd~~-------~~~~~ 490 (915)
.+++|+.|.++++||+++|+++... ....+|..+.|+++|+. .+++. +..+.|.++|++ ..++.
T Consensus 66 ~liTGSAD~t~kLWDv~tGk~la~~----k~~~~Vk~~~F~~~gn~-~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~ 140 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGKQLATW----KTNSPVKRVDFSFGGNL-ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY 140 (327)
T ss_pred eeeeccccceeEEEEcCCCcEEEEe----ecCCeeEEEeeccCCcE-EEEEehhhcCcceEEEEEEccCChhhhcccCce
Confidence 9999999999999999999877633 24668999999999994 33332 345789999998 34567
Q ss_pred EEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCcee-EecCCCCcEEEEEECCCCCEEEEEeecCCCCceE
Q 002494 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (915)
Q Consensus 491 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i 569 (915)
..+..+.+.++.+-|.|.+ ++|++|..||.|..||++++.... ....|...|+.+.+++|..++++++. |.+-
T Consensus 141 ~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dtta 214 (327)
T KOG0643|consen 141 LKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DTTA 214 (327)
T ss_pred EEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cccc
Confidence 7788888999999998865 799999999999999999876655 44668889999999999999999985 7779
Q ss_pred EEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCc--E------------EEEeCCCCceEEEEcCCCCCCCc
Q 002494 570 VEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ--I------------KFWDMDNMNMLTTVDADGGLPAS 635 (915)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~--i------------~iwd~~~~~~~~~~~~~~~~~~v 635 (915)
++||..+-+.++++.... ++++.+++|....++.|+.... | ++|++-..+.+..+++|-+ +|
T Consensus 215 kl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG--PI 290 (327)
T KOG0643|consen 215 KLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG--PI 290 (327)
T ss_pred eeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc--Cc
Confidence 999999999999998765 8999999998888887653221 1 2222222345556666655 99
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 636 ~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
++++|+|+|+..++|+.||.|++.-....
T Consensus 291 NsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 291 NSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ceeEECCCCcccccCCCCceEEEEEeccc
Confidence 99999999999999999999999876643
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-27 Score=215.22 Aligned_cols=312 Identities=15% Similarity=0.240 Sum_probs=239.3
Q ss_pred ccEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEE
Q 002494 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (915)
Q Consensus 337 ~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 416 (915)
.+.+.+|.....|.+++|+|.|. +.++|++..+++|-....-..++.. .......+....+--+.|.+.|+|.+|
T Consensus 23 f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred eEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEe
Confidence 35677788889999999999998 7899999999998765432211100 000000011111224679999999999
Q ss_pred cCCCCEEEEEECCCeEEEEEecCC--CceeeeEEeecccCCeeEEEEecC---CCeEEEEEE-eCCCcEEEEEcCCCeeE
Q 002494 417 GPDGLMLGVAFSKHIVHLYTYNPT--GELRQHLEIDAHVGGVNDIAFAHP---NKQLCIVTC-GDDKMIKVWDVVAGRKQ 490 (915)
Q Consensus 417 spd~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~h~~~v~~~~~s~~---~~~~~l~s~-~~d~~i~vwd~~~~~~~ 490 (915)
||+|.++++|+.|.+|++..++.. +.......+.-|.+.|.+++|..+ +.. +++++ ..|..|++-|..+|+..
T Consensus 98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcc
Confidence 999999999999999999766543 333334467789999999999743 233 56654 45788888899999999
Q ss_pred EEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecC-------CCCcEEEEEECCCCCEEEEEeecC
Q 002494 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTSK 563 (915)
Q Consensus 491 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~sp~g~~l~~~~~~~ 563 (915)
+.+.+|.+.|.++- +. ++-.+++|+.|.+|++||++-..++..+.. ....|.+++..|.|+.|+++-.
T Consensus 177 ~a~sghtghilaly-sw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-- 251 (350)
T KOG0641|consen 177 HALSGHTGHILALY-SW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-- 251 (350)
T ss_pred eeecCCcccEEEEE-Ee--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC--
Confidence 99999999998873 22 336899999999999999998777665432 1247899999999999999874
Q ss_pred CCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ceEEEEcCCCCCCCcceEEEc
Q 002494 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGGLPASPRLRFN 641 (915)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s 641 (915)
|....+||++.++.++.|..|.. .|+++.|+|...++++++.|.+|++-|+... ..+..+-...+...+..+.|+
T Consensus 252 --dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh 328 (350)
T KOG0641|consen 252 --DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWH 328 (350)
T ss_pred --CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEec
Confidence 67799999999999999999998 8999999999999999999999999999742 122222222233367889999
Q ss_pred CCCCEEEEEeCCCcEEEEEcC
Q 002494 642 KEGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 642 ~~~~~l~s~~~dg~i~iwd~~ 662 (915)
|..-.+++.+.|.++.+|-+.
T Consensus 329 ~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 329 PQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CccceeeeccCcceEEEeccC
Confidence 988889999999999999753
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=250.35 Aligned_cols=457 Identities=16% Similarity=0.184 Sum_probs=312.6
Q ss_pred cccEEEEec-CCCCEEEEEEcCCC--CeEEEEEeCCCcEEEEEcCCCceec----ccceee------eecc-cC-ccccc
Q 002494 336 TKTVVRTLN-QGSNVMSMDFHPQQ--QTILLVGTNVGDISLWEVGSRERLA----HKPFKV------WDIS-AA-SMPLQ 400 (915)
Q Consensus 336 ~~~~~~~l~-h~~~V~~v~fspd~--~~ll~~gs~dg~v~iwd~~~~~~~~----~~~~~~------~~~~-~~-~~~~~ 400 (915)
..+.+..+. |.+.|.+++|...+ ..+||+||.|..|+||.+.-+.... +....+ +-.. .. -....
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 345566666 99999999998754 4789999999999999985443111 110000 0000 00 00111
Q ss_pred ccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCce----eeeEEeecccCCeeEEEEecCCCeEEEEEEeCC
Q 002494 401 NALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (915)
Q Consensus 401 ~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d 476 (915)
..++.+|+..|+++.|+|.+..|++++.|.++.+|...+..-+ .+.-...+.....+...|+|++. .+++-+..
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~--~ii~~g~~ 337 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN--VIIAHGRT 337 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC--EEEEeccc
Confidence 2346799999999999999999999999999999987765322 11112334456789999999998 78899999
Q ss_pred CcEEEEEcCCC---eeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCC----ceeEecCCCCcEEEEEE
Q 002494 477 KMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG----SRVDYDAPGNWCTMMAY 549 (915)
Q Consensus 477 ~~i~vwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~ 549 (915)
|..++|...+. .....+.+|.+.|.+++|+|.+ .++++.+.|.+-|+|---..+ ....-+.|+..++|+++
T Consensus 338 Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psG--eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 338 GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSG--EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred CcEEEEeccCccceeeccccccccccceeeeecCCC--CEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence 99999983322 2333567899999999998865 799999999999998543111 12234567888999999
Q ss_pred CCCCCEEEEEeecCCCCceEEEEECCC-------------------------------------------Ce--------
Q 002494 550 SADGTRLFSCGTSKEGESHLVEWNESE-------------------------------------------GA-------- 578 (915)
Q Consensus 550 sp~g~~l~~~~~~~~~~~~i~~wd~~~-------------------------------------------~~-------- 578 (915)
-+....+++|+. ...+++|+... |.
T Consensus 416 vn~~~~FVSgAd----EKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et 491 (764)
T KOG1063|consen 416 VNEDLQFVSGAD----EKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAET 491 (764)
T ss_pred ccCCceeeeccc----ceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeec
Confidence 875445556552 44456655321 00
Q ss_pred -------------------------eEEEecCCCCCceEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCceEEEEcC
Q 002494 579 -------------------------IKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-----EFQIKFWDMDNMNMLTTVDA 628 (915)
Q Consensus 579 -------------------------~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~ 628 (915)
.++++.||.. .|++++.+|+|+++|+++. ...|++|+..+-..+..+.+
T Consensus 492 ~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGy-Ev~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~ 570 (764)
T KOG1063|consen 492 PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGY-EVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG 570 (764)
T ss_pred ccccCchhccCCChHHHHHHhccchhhHHhccCce-eEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc
Confidence 0123345555 7999999999999999873 34699999999888888888
Q ss_pred CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeee---ccCCCCcccccCCCCCCCCCCceeeecccCccccc
Q 002494 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM---LEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 705 (915)
Q Consensus 629 ~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (915)
|.- .|+.++|||||++|++.+.|.++.+|....+...-.. .+.|...
T Consensus 571 HsL--TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRI---------------------------- 620 (764)
T KOG1063|consen 571 HSL--TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRI---------------------------- 620 (764)
T ss_pred cce--EEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceE----------------------------
Confidence 866 8999999999999999999999999998655211111 2222222
Q ss_pred cCCcccCCCCCCCCcccccccCCCceeccCCceeeccCC-CceeEeecCCCCCccceeEeecCCccCCCceEEEEEecC-
Q 002494 706 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS- 783 (915)
Q Consensus 706 ~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d- 783 (915)
+|+ ..++||++++|+++. .+|++|...+.......+. .... +...|+.++|.|-
T Consensus 621 ------IWd---------------csW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~-a~~~--~~~aVTAv~~~~~~ 676 (764)
T KOG1063|consen 621 ------IWD---------------CSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF-ACLK--FSLAVTAVAYLPVD 676 (764)
T ss_pred ------EEE---------------cccCcccceeEEecCCceEEEEeccCchhhhhhhh-chhc--cCCceeeEEeeccc
Confidence 222 357899999999988 8999999886433333321 2222 7889999999762
Q ss_pred ---Cc-eEEEeeccceeEEeecccccCCCCCCccccccceeecCCCCCceeccCCCCCCCCCceeEEEEecC--------
Q 002494 784 ---GL-SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN-------- 851 (915)
Q Consensus 784 ---~~-~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~I~~l~~S~d-------- 851 (915)
.. .+++|-..|.|.+|+......-+ ++-.|...+. + -....| ...|+.+.|+|-
T Consensus 677 ~~e~~~~vavGle~GeI~l~~~~~~~~~~--------~~~~~~~~~~--l---~~~~~~-~~aV~rl~w~p~~~~~~~~~ 742 (764)
T KOG1063|consen 677 HNEKGDVVAVGLEKGEIVLWRRKREHRQV--------TVGTFNLDTR--L---CATIGP-DSAVNRLLWRPTCSDDWVED 742 (764)
T ss_pred cccccceEEEEecccEEEEEecccccccc--------cceeeeeccc--c---ccccCh-HHhhheeEeccccccccccc
Confidence 22 45777889999999876422100 1111221110 0 011115 899999999964
Q ss_pred C--CeEEEec-CCeeEEeecc
Q 002494 852 D--SYVMSAS-GGKVSLFNMM 869 (915)
Q Consensus 852 g--~~L~s~s-d~~v~vw~l~ 869 (915)
. ..|++|+ |.+++++++.
T Consensus 743 ~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 743 KEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cceeEEeeecccceeEEeecc
Confidence 2 2468888 8999999875
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=270.63 Aligned_cols=306 Identities=16% Similarity=0.257 Sum_probs=248.7
Q ss_pred CCCCEEEEEEcCCCCeEEEEEe--CCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ 422 (915)
++..|.++..+|||. .+|+|+ .||.++||+.+.--... ..++.. .+........|.+.|+|+.|+|||++
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~----~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEK----EEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccchh----hhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 356799999999998 589999 89999999976421000 011111 12222335679999999999999999
Q ss_pred EEEEECCCeEEEEEecC----------C-----CceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC
Q 002494 423 LGVAFSKHIVHLYTYNP----------T-----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (915)
Q Consensus 423 l~s~~~dg~i~vwd~~~----------~-----~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~ 487 (915)
||+|++|+.|.||+... | +..+....+.+|...|.+++|+|++. ++++++.|++|.+|+..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999873 0 01234456789999999999999999 8999999999999999999
Q ss_pred eeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCC------CCcEEEEEECCCCCEEEEEee
Q 002494 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGT 561 (915)
Q Consensus 488 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~sp~g~~l~~~~~ 561 (915)
+.+..+++|.+.|..+.|.|. |++|++-+.|++|++|++.+.+....+..+ ...+..+.|||||.+|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP~--Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDPI--GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECCc--cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 999999999999999999885 489999999999999997775555544332 236788999999999998876
Q ss_pred cCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCC-----CC------------EEEEEeCCCcEEEEeCCCCceEE
Q 002494 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-----RN------------RFLAAGDEFQIKFWDMDNMNMLT 624 (915)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~------------~l~s~~~dg~i~iwd~~~~~~~~ 624 (915)
-+.+..++.+.+..+.+.-..+-||.. ++.++.|+|. .+ .+|+|+.|++|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 666778899999988888889999999 9999999972 11 56779999999999998777776
Q ss_pred EEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 625 ~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
....-.. ..|..++|+|||..|++++.||+|.++.++..
T Consensus 319 vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 6543322 28999999999999999999999999988754
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-28 Score=225.27 Aligned_cols=234 Identities=15% Similarity=0.201 Sum_probs=203.3
Q ss_pred ccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEE
Q 002494 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (915)
Q Consensus 403 ~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vw 482 (915)
.+.+|+.+++.+.++.+|.+|.+++.|.+..||--.+|+.+. .+.+|.+.|+|+..+-+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 478899999999999999999999999999999988887666 7899999999999999988 79999999999999
Q ss_pred EcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeC-----CCeEEEEecCC-------CCceeEecCCCCcEEEEEEC
Q 002494 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-----DGKIKAWLYDY-------LGSRVDYDAPGNWCTMMAYS 550 (915)
Q Consensus 483 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-----dg~i~iwd~~~-------~~~~~~~~~~~~~i~~~~~s 550 (915)
|+.+|+++.+++ ...+|..+.|++.+ ++++.+.. .+.|.++|++. ..+...+..+...++.+-|+
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999997 67889999998865 56555543 46799999883 34456677788899999999
Q ss_pred CCCCEEEEEeecCCCCceEEEEECCCCee-EEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCC
Q 002494 551 ADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (915)
Q Consensus 551 p~g~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 629 (915)
|-+++|++|.. ++.|..||+++|.. +..-+.|.. .|+.++++|+..++++++.|.+-++||..+.+.++++...
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 99999999974 77899999999854 455566666 8999999999999999999999999999999999998765
Q ss_pred CCCCCcceEEEcCCCCEEEEEeC
Q 002494 630 GGLPASPRLRFNKEGSLLAVTTS 652 (915)
Q Consensus 630 ~~~~~v~~v~~s~~~~~l~s~~~ 652 (915)
. +|++.+++|....++.|+.
T Consensus 232 ~---PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 232 R---PVNTAAISPLLDHVILGGG 251 (327)
T ss_pred c---cccceecccccceEEecCC
Confidence 4 8999999998777777664
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=222.62 Aligned_cols=274 Identities=14% Similarity=0.219 Sum_probs=236.3
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC-CCCEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-d~~~l 423 (915)
|...|.+++|+-+|.+ |++|+.|+++.+|++......... ...+|.+.|..++|+| ....|
T Consensus 19 ~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~~-----------------~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKEL-----------------VYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred hhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhhh-----------------cccCCCcchhhheeCCCCCcce
Confidence 7889999999999985 899999999999999987544321 2567999999999998 56789
Q ss_pred EEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEE
Q 002494 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (915)
Q Consensus 424 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 503 (915)
++++.|.+|++||+..++++... . ..+.-.-+.|+|+|. +++.++.|..|...|.++.+.....+ ....++.+
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~ 153 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEI 153 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeeee
Confidence 99999999999999999877633 2 233445679999999 79999999999999999887766554 55677888
Q ss_pred EeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEe
Q 002494 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (915)
Q Consensus 504 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (915)
+|+.++ ++++.....|.|.|......+.+..+..|...+.|+.|+|+|+++|+|+. |..+.+||+..--+++.+
T Consensus 154 ~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 154 SWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERCI 227 (313)
T ss_pred eecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhheee
Confidence 888443 56766667799999999888888999999999999999999999999986 777999999999999999
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCC
Q 002494 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (915)
Q Consensus 584 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 653 (915)
..+.- +|+.+.|+.+|++||++++|..|-|=++++|..+..++..+ +-..++|+|...+||.+++|
T Consensus 228 sRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 228 SRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 88877 99999999999999999999999999999999999998665 67899999999999998875
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=226.66 Aligned_cols=284 Identities=16% Similarity=0.247 Sum_probs=227.8
Q ss_pred EEEEEcC--CCCeEEEEE-----eCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCC-CC
Q 002494 350 MSMDFHP--QQQTILLVG-----TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GL 421 (915)
Q Consensus 350 ~~v~fsp--d~~~ll~~g-----s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-~~ 421 (915)
+++.||| +++..+|++ ...|.+.|-++..++.+.. +.- -.-...+..++|+++ .+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s---------------~d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQS---------------YDTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEe---------------eecccceeEeeecCCCcc
Confidence 5778888 443222332 1368899999875544432 111 124567899999996 46
Q ss_pred EEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEE
Q 002494 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (915)
Q Consensus 422 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 501 (915)
.+++++.||++++||+.... ..+..++.|...|.++.|++..++ .+++++.|++|++|+...++.+.++.+|...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~~s--~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMPS--KPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCCCC--cchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 78889999999999954432 344467889999999999998777 678889999999999999999999999999999
Q ss_pred EEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCE-EEEEeecCCCCceEEEEECCCC-ee
Q 002494 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEG-AI 579 (915)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~-l~~~~~~~~~~~~i~~wd~~~~-~~ 579 (915)
...|+|. .++.+++++.|+++++||++..+....+..|...+.++.|+.-... +++++ .|+.|+.||++.- .+
T Consensus 152 ~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~----vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG----VDNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC----CCceEEEEehhhcccc
Confidence 9999997 4579999999999999999998888888999999999999986554 55655 3888999999864 45
Q ss_pred EEEecCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-ceEEEEcCCCCCCCcceEEEcC-CCCEEEEEeCCCcE
Q 002494 580 KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGI 656 (915)
Q Consensus 580 ~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i 656 (915)
+..+.+|.- .|+.++|||.. ..|++++.|-+++|||...+ ..+.+...|.. -|..+.||+ ++.++|+++.|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccce
Confidence 777888877 89999999965 57888999999999999843 45555555655 688899998 78899999999999
Q ss_pred EEEEc
Q 002494 657 KILAN 661 (915)
Q Consensus 657 ~iwd~ 661 (915)
+||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99984
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-26 Score=237.75 Aligned_cols=450 Identities=12% Similarity=0.174 Sum_probs=307.5
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
....|.+++|++.++ |++.+.+|.|.-||+.+++.+.. +....+.|++++.+|.++.++
T Consensus 68 ~drsIE~L~W~e~~R--LFS~g~sg~i~EwDl~~lk~~~~-------------------~d~~gg~IWsiai~p~~~~l~ 126 (691)
T KOG2048|consen 68 EDRSIESLAWAEGGR--LFSSGLSGSITEWDLHTLKQKYN-------------------IDSNGGAIWSIAINPENTILA 126 (691)
T ss_pred CCCceeeEEEccCCe--EEeecCCceEEEEecccCceeEE-------------------ecCCCcceeEEEeCCccceEE
Confidence 578999999998775 56777899999999999987653 355788999999999999999
Q ss_pred EEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEec--------CC
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE--------GH 496 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--------~~ 496 (915)
.|+.||.+..++...+... ....+...++.|.+++|+|++. .+++|+.||.|++||..++..+.... ..
T Consensus 127 IgcddGvl~~~s~~p~~I~-~~r~l~rq~sRvLslsw~~~~~--~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~ 203 (691)
T KOG2048|consen 127 IGCDDGVLYDFSIGPDKIT-YKRSLMRQKSRVLSLSWNPTGT--KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKRE 203 (691)
T ss_pred eecCCceEEEEecCCceEE-EEeecccccceEEEEEecCCcc--EEEecccCceEEEEEcCCCceEEEeeecccccccCC
Confidence 9999997777776664432 2334555678999999999998 59999999999999999887766221 13
Q ss_pred CCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCC
Q 002494 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (915)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~ 576 (915)
..-|+++.+-.+ ..|++|..-|+|.+||...+.....+..|...|.+++..+++.++++++. |+.|..+...+
T Consensus 204 ~~iVWSv~~Lrd---~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGv----d~~ii~~~~~~ 276 (691)
T KOG2048|consen 204 PTIVWSVLFLRD---STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGV----DPKIIQYSLTT 276 (691)
T ss_pred ceEEEEEEEeec---CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccC----CCceEEEEecC
Confidence 345778877643 37999999999999999999998888999999999999999999999886 66688887765
Q ss_pred Cee---EE-EecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcc-eEEEcCCCCEEEEEe
Q 002494 577 GAI---KR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP-RLRFNKEGSLLAVTT 651 (915)
Q Consensus 577 ~~~---~~-~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~s~~ 651 (915)
+.. .. ....|.. .+.+++..++ .+++||.|..+.+-.....+...-...... +-. .+...|. +++..--
T Consensus 277 ~~~~wv~~~~r~~h~h-dvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~--p~~~~v~~a~~-~~L~~~w 350 (691)
T KOG2048|consen 277 NKSEWVINSRRDLHAH-DVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLF--PASDRVSVAPE-NRLLVLW 350 (691)
T ss_pred CccceeeeccccCCcc-cceeeeeecc--eEEecceeeEEEEccccccCchhhhccccc--cccceeecCcc-ceEEEEe
Confidence 533 11 2233443 7899998876 899999999998876654211111100000 111 1333343 3444444
Q ss_pred CCCcEEEEEcCCC--------ceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCc---
Q 002494 652 SDNGIKILANSDG--------VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV--- 720 (915)
Q Consensus 652 ~dg~i~iwd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 720 (915)
.+..+.+|.+.+. ..+++........+...+. +|++++++.+.- .+++++.+.....
T Consensus 351 ~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~ai------SPdg~~Ia~st~------~~~~iy~L~~~~~vk~ 418 (691)
T KOG2048|consen 351 KAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAI------SPDGNLIAISTV------SRTKIYRLQPDPNVKV 418 (691)
T ss_pred ccccccceeccCcccccccChhhheeeecCCccceeeecc------CCCCCEEEEeec------cceEEEEeccCcceeE
Confidence 4566778877655 0112222222222333222 589998887762 1244444332111
Q ss_pred ------ccccccCCCceeccCCceeeccCC--CceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEeec
Q 002494 721 ------SISSLGTIDGSRLVDVKPRVAEDV--DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS 792 (915)
Q Consensus 721 ------~~~~~~~~~~~~s~dg~~la~~~~--~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~ 792 (915)
....+......|+.|+..++..+. ..+.+++....... .+..+.-. +.-..|..++.||||+|+++.+.
T Consensus 419 ~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~k-el~~~~~~--~~~~~I~~l~~SsdG~yiaa~~t 495 (691)
T KOG2048|consen 419 INVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFK-ELKSIQSQ--AKCPSISRLVVSSDGNYIAAIST 495 (691)
T ss_pred EEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchh-hhhccccc--cCCCcceeEEEcCCCCEEEEEec
Confidence 111222356788888877766663 66777766643222 22211111 24567999999999999999999
Q ss_pred cceeEEeecccccCCCCCCccccccceeecCCCCCceeccCCCCCCCCCceeEEEEec-CCCeEEEec-CCeeEEeeccC
Q 002494 793 NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGKVSLFNMMT 870 (915)
Q Consensus 793 dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~I~~l~~S~-dg~~L~s~s-d~~v~vw~l~t 870 (915)
+|.|.+|++...+.. .+ ... . ...|++++|+| +...||.+. ++.|.-+|+..
T Consensus 496 ~g~I~v~nl~~~~~~--------------------~l---~~r--l-n~~vTa~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 496 RGQIFVYNLETLESH--------------------LL---KVR--L-NIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred cceEEEEEcccceee--------------------cc---hhc--c-CcceeeeeccccccCcEEEEecCCeEEEEecch
Confidence 999999987663321 11 111 3 67899999994 555666665 99999999955
Q ss_pred CC
Q 002494 871 FK 872 (915)
Q Consensus 871 ~k 872 (915)
.+
T Consensus 550 ~~ 551 (691)
T KOG2048|consen 550 RN 551 (691)
T ss_pred hh
Confidence 44
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=262.00 Aligned_cols=300 Identities=16% Similarity=0.193 Sum_probs=216.2
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC---CCC
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP---DGL 421 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---d~~ 421 (915)
|.+.|+++.||+||+ +||+|+.||.|+||.+...+....... + .+..... +. ..+.+.-+.-++ .++
T Consensus 266 h~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~---~---~~~~~~~--~~-~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEG---D---SSCMYFE--YN-ANSQIEPSTSSEEKISSR 335 (712)
T ss_pred cCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhccccc---c---cchhhhh--hh-hccccCcccccccccccc
Confidence 899999999999998 589999999999999987543211000 0 0000000 00 000000001111 011
Q ss_pred --EEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCC
Q 002494 422 --MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (915)
Q Consensus 422 --~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 499 (915)
..-.+.....+.+-+..-.-.-+....+.||.+.|.++.||.++ +|++++.|++|++|++....++..|. |...
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hndf 411 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HNDF 411 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCCe
Confidence 11112222222211111111112333678999999999999776 69999999999999999999999996 9999
Q ss_pred EEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCee
Q 002494 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (915)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (915)
|+|++|+|..+ +|+++|+.||.+|||++...+...-.. -..-|++++|.|||+..++|+. +|.+++|+....+.
T Consensus 412 VTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 412 VTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLKL 485 (712)
T ss_pred eEEEEecccCC-CcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEe----ccEEEEEEccCCeE
Confidence 99999999855 899999999999999998655444333 3468999999999999999997 77899999988776
Q ss_pred EEEecCCC-------CCceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEe
Q 002494 580 KRTYSGFR-------KRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (915)
Q Consensus 580 ~~~~~~~~-------~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 651 (915)
+..+.-+. ...|+.+.|.|.. ..+++.+.|..|+|+|.++..++..+++......-....|+.||++|++++
T Consensus 486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 65543211 1269999999754 358888999999999999999999998765555556789999999999999
Q ss_pred CCCcEEEEEcCCC
Q 002494 652 SDNGIKILANSDG 664 (915)
Q Consensus 652 ~dg~i~iwd~~~~ 664 (915)
+|..|++|+....
T Consensus 566 eDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 566 EDSWVYIWKNDSF 578 (712)
T ss_pred cCceEEEEeCCCC
Confidence 9999999998644
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=218.76 Aligned_cols=249 Identities=15% Similarity=0.218 Sum_probs=213.4
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd 483 (915)
+.+|...|.+++|+-+|..|++|+.|+++.+|+++...... .....+|.+.|-.++|+|..+. .+++++.|++|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-ELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-hhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 56799999999999999999999999999999999874433 3356789999999999998877 899999999999999
Q ss_pred cCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecC
Q 002494 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (915)
Q Consensus 484 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~ 563 (915)
++++++...+......+ .+.|+|+ |++++.++.|..|.+.|.++.+.....+ ....+..++|+.++.+++...
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~--g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPD--GEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCC--CCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEec---
Confidence 99999999887555544 4677774 4799999999999999998766555433 334677888987777666543
Q ss_pred CCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCC
Q 002494 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (915)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 643 (915)
|.|.|.|.....-+++..++.|.. ...|+.|+|+|++||+|+.|..+.+||+...-+++.+.-..- +|+.++||.|
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS~d 242 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFSHD 242 (313)
T ss_pred -CCceEEEEeccccccccccccCCc-ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEeccC
Confidence 478899999999999999999997 788999999999999999999999999998878888876665 8999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCc
Q 002494 644 GSLLAVTTSDNGIKILANSDGV 665 (915)
Q Consensus 644 ~~~l~s~~~dg~i~iwd~~~~~ 665 (915)
|++||+|+.|..|-|=++++|.
T Consensus 243 g~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred cceeeccCccceEEeEecccCC
Confidence 9999999999999998888883
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=233.19 Aligned_cols=288 Identities=14% Similarity=0.187 Sum_probs=245.3
Q ss_pred CCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeee-----EEeecccCCeeEEEEecCCCeEEEEEEeCCCcEE
Q 002494 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH-----LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (915)
Q Consensus 406 ~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~-----~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~ 480 (915)
+....+.|..|||||++|++|+.||.|.+||..+|+..+.. -.+.-+..+|.|+.|+.|.. .+++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCcEE
Confidence 45567889999999999999999999999999998653321 13445788999999999998 899999999999
Q ss_pred EEEcCCCeeEEEec-CCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEE
Q 002494 481 VWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (915)
Q Consensus 481 vwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~ 559 (915)
+|.+.+|.|++.|. .|...|+++.|+.++ ..+++++.|.++++.-+.+++....+.+|...|+.+.|++||.+++++
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~--SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDN--SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCc--chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 99999999999997 799999999998754 689999999999999999999999999999999999999999999999
Q ss_pred eecCCCCceEEEEECCCCeeEEEecCCC-CCceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceEEEEcCC-CCCCCcc
Q 002494 560 GTSKEGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTT-RNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASP 636 (915)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~ 636 (915)
+. |++|++|+.++++++.+|+... +.+|+.+-.-|. ...++++...++|+|-++. |+.++++... ...+...
T Consensus 367 Ss----DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 367 SS----DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFI 441 (508)
T ss_pred cC----CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceE
Confidence 85 8889999999999999987543 337777777774 4678888889999999996 6788887542 2233567
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCC
Q 002494 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (915)
Q Consensus 637 ~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 714 (915)
++..||.|.++++.+.|+.++.|...+| .+.+++.-|...+..+.-. |.-..+++.+.++ ..++|.
T Consensus 442 ~~~lSpkGewiYcigED~vlYCF~~~sG-~LE~tl~VhEkdvIGl~HH------PHqNllAsYsEDg-----llKLWk 507 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVHEKDVIGLTHH------PHQNLLASYSEDG-----LLKLWK 507 (508)
T ss_pred EEEecCCCcEEEEEccCcEEEEEEeecC-ceeeeeecccccccccccC------cccchhhhhcccc-----hhhhcC
Confidence 7889999999999999999999999999 8889999999888877666 6777777777654 556663
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=255.00 Aligned_cols=305 Identities=14% Similarity=0.102 Sum_probs=227.9
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC-CCCEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-d~~~l 423 (915)
+-..|.....++|+.. +++++.+.....|+...+..+. +.............+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4456777778888664 4566777777888876653221 11111111112234678999999999999 88999
Q ss_pred EEEECCCeEEEEEecCCCce----eeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCC
Q 002494 424 GVAFSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (915)
Q Consensus 424 ~s~~~dg~i~vwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 499 (915)
++|+.|++|++||+.++... .....+.+|...|.+++|+|++.. +|++++.|++|++||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 99999999999999865321 223367899999999999998754 7999999999999999999999999999999
Q ss_pred EEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCC-cEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCe
Q 002494 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (915)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (915)
|.+++|+|+ |.+|++++.|+.|++||++++.....+..|.+ ....+.|.+++..+++++.++..++.|++||+++..
T Consensus 171 V~sla~spd--G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNLD--GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEECC--CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 999999985 47999999999999999999887777777765 345778999988888877665568899999998754
Q ss_pred -eEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 002494 579 -IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (915)
Q Consensus 579 -~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i 656 (915)
.+.....+....+....|+++++++++++ .||.|++||+.+++.+....... ..++..++|.|.-. +-...--..
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk~~--~dv~~~Ei~ 325 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPKWS--LDTRKCEIA 325 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEeccccc--ccccceeee
Confidence 34334333333566678999999999887 59999999999998877654432 23678888988432 111222334
Q ss_pred EEEEcC
Q 002494 657 KILANS 662 (915)
Q Consensus 657 ~iwd~~ 662 (915)
++|.+.
T Consensus 326 r~~~l~ 331 (493)
T PTZ00421 326 RFYALT 331 (493)
T ss_pred EEEEec
Confidence 566654
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=225.57 Aligned_cols=284 Identities=13% Similarity=0.186 Sum_probs=246.3
Q ss_pred cCCCccCeEEEEEcC---CCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEE
Q 002494 404 LNDAAISVNRCVWGP---DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (915)
Q Consensus 404 ~~~~~~~v~~~~~sp---d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~ 480 (915)
..+|..+|..++||| +|-+|++++.|+.-.+-+-++|.-+. .+.+|.+.|+....+.+.. ..++++.|-+.+
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadftak 84 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTAK 84 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchhh
Confidence 578999999999997 88899999999998888878877666 7889999999999988877 688999999999
Q ss_pred EEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCc-eeEecCCCCcEEEEEECCCCCEEEEE
Q 002494 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSC 559 (915)
Q Consensus 481 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~~~ 559 (915)
+||.-+|..+.+|. |..-|.+++|+.+. ++|++|+.+..+|+||++..+. +..+.+|.+.|..+-|....+.++++
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af~~ds--~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAFSQDS--NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEecccc--hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 99999999999996 89999999997654 7999999999999999987654 45778899999999999999999987
Q ss_pred eecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEE
Q 002494 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (915)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 639 (915)
+. ++.|++||.+++..++++.... .|+++..+++|+++.+ ...+.|.+||..+-.+++.+.... .|.+.+
T Consensus 162 ad----d~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~---nV~SAS 231 (334)
T KOG0278|consen 162 AD----DKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPC---NVESAS 231 (334)
T ss_pred cc----CCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCcc---cccccc
Confidence 64 7779999999999999987655 7999999999986554 455689999999999999887765 688999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCC
Q 002494 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (915)
Q Consensus 640 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 719 (915)
.+|+...+++|+.|+.++.||..+|.+.....++|.++|.++
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcV-------------------------------------- 273 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCV-------------------------------------- 273 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEE--------------------------------------
Confidence 999999999999999999999999965554457787766643
Q ss_pred cccccccCCCceeccCCceeeccCC-CceeEeecCC
Q 002494 720 VSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPD 754 (915)
Q Consensus 720 ~~~~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~~~ 754 (915)
.|||||...|+++. |+||||.+..
T Consensus 274 -----------rFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 274 -----------RFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred -----------EECCCCceeeccCCCceEEEEEecC
Confidence 78899999999888 9999998764
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-26 Score=218.43 Aligned_cols=283 Identities=14% Similarity=0.231 Sum_probs=231.2
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
....|.++.|+++|. .+++++.|.+++|||..+++.+.. +..+.-.|..+.|....+.++
T Consensus 13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 467899999999998 567788999999999999988764 344666788889988888877
Q ss_pred EEEC--CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEE
Q 002494 425 VAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (915)
Q Consensus 425 s~~~--dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 502 (915)
.++. |.+|+..++.+.+.++ -+.||...|++++.+|-+. .+++++.|++|++||++..++...+.....++
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi-- 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI-- 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence 7776 8899999999987776 7889999999999999998 79999999999999999888877765444444
Q ss_pred EEeecCCCccEEEEEeCCCeEEEEecCCCC--ceeEec---CCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCC
Q 002494 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYD---APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (915)
Q Consensus 503 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~---~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~ 577 (915)
++|.| .|-+++++.....|++||++... .-..+. ......+.+.|||||++++.++. .+.+++.|.-+|
T Consensus 146 ~AfDp--~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAFDP--EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred eeECC--CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 56766 44677777777799999998752 222333 23558899999999999998874 777999999999
Q ss_pred eeEEEecCCCCC--ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 002494 578 AIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (915)
Q Consensus 578 ~~~~~~~~~~~~--~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~ 655 (915)
....++.++... .--..+|+||++++++|+.||+|.+|+++++..+..+.+. ...++.++.|+|.-.++++++ ..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ce
Confidence 999998887653 1246789999999999999999999999999999999885 233889999999777766654 56
Q ss_pred EEEEEcCC
Q 002494 656 IKILANSD 663 (915)
Q Consensus 656 i~iwd~~~ 663 (915)
+.+|=...
T Consensus 297 l~fw~p~~ 304 (311)
T KOG1446|consen 297 LVFWLPDE 304 (311)
T ss_pred EEEEeccc
Confidence 88886553
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-27 Score=222.07 Aligned_cols=275 Identities=17% Similarity=0.252 Sum_probs=222.4
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-ceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l 423 (915)
..+.|.+++|||....++++||.||+||+|+++.. .... +....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 36789999999966668889999999999999874 3221 2246699999999999999999
Q ss_pred EEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEE
Q 002494 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (915)
Q Consensus 424 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 503 (915)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+.....+|+||+.|++|+.||.+...++.++. -..++.++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999997533 56789999999999877665589999999999999999999888886 56778877
Q ss_pred EeecCCCccEEEEEeCCCeEEEEecCCCCceeE-e-cCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCC--ee
Q 002494 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-Y-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AI 579 (915)
Q Consensus 504 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~-~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~--~~ 579 (915)
..-. .+++.+..++.|.+|+++....... . ..-...+.|++..+|....+.|+- +|.+.+..+..+ +.
T Consensus 163 Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 6532 4788999999999999976543332 1 122346889998888877777775 666777777765 44
Q ss_pred EEEecCCCC--------CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEe
Q 002494 580 KRTYSGFRK--------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (915)
Q Consensus 580 ~~~~~~~~~--------~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 651 (915)
-..|+.|.. ..|++++|+|....|+++|.||++.+||-.....+...+.+.. +|++++|+.+|.++|.+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEEe
Confidence 455666652 2578899999999999999999999999988877777776655 999999999999998875
Q ss_pred C
Q 002494 652 S 652 (915)
Q Consensus 652 ~ 652 (915)
.
T Consensus 313 g 313 (347)
T KOG0647|consen 313 G 313 (347)
T ss_pred e
Confidence 4
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-27 Score=258.06 Aligned_cols=283 Identities=17% Similarity=0.284 Sum_probs=247.1
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
+...+.+..|. ++ .+++|+.+++|.+||..++..+.. .+.+|.+.|+++++..-+.+|+
T Consensus 207 ~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv 265 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV 265 (537)
T ss_pred Ccchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence 57789999999 44 378899999999999999876643 1578999999999998889999
Q ss_pred EEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEE
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~ 504 (915)
+|+.|.++++||..+|++.. .+.+|...|.++...+. ++++|+.|.+|++|++.++.++..+.+|..+|+++.
T Consensus 266 sgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred EEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 99999999999999998777 78899999999987543 688899999999999999999999999999999999
Q ss_pred eecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCC-eeEEEe
Q 002494 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTY 583 (915)
Q Consensus 505 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~ 583 (915)
.+ +.++++|+.|++|++||+.+.+++..+.+|...|.++.+.+. ..+++++. |+.|++||+++. +++.++
T Consensus 339 ~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 339 LD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred ec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhhh
Confidence 85 369999999999999999999999999999999999988766 78888886 677999999999 999999
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 002494 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (915)
Q Consensus 584 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 663 (915)
.+|.. .+..+. ..+++|++++.||+|++||..+++++..+.+. +...|..+++. ...+++++.||++++||+.+
T Consensus 410 ~~h~~-~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 410 QGHTS-LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cCCcc-cccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 99987 565544 46789999999999999999999999999885 22367777766 57888999999999999999
Q ss_pred Cceeeeec
Q 002494 664 GVRLLRML 671 (915)
Q Consensus 664 ~~~~~~~~ 671 (915)
+ .+.+.+
T Consensus 484 ~-~~~~~l 490 (537)
T KOG0274|consen 484 G-TLIRTL 490 (537)
T ss_pred C-chhhhh
Confidence 9 555544
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=224.66 Aligned_cols=293 Identities=16% Similarity=0.198 Sum_probs=232.9
Q ss_pred EeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCC------------C------eeEEEecCCCCCEEEEEeecCC
Q 002494 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA------------G------RKQYTFEGHEAPVYSVCPHHKE 509 (915)
Q Consensus 448 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~------------~------~~~~~~~~~~~~v~~i~~~~~~ 509 (915)
.+..|++++.+.+|++||. ++++|+.|..|+|.|++. + ..++++..|...|+++.|+|..
T Consensus 107 ylt~HK~~cR~aafs~DG~--lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGS--LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred EEeecccceeeeeeCCCCc--EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 3557999999999999999 899999999999999861 1 3467788899999999999975
Q ss_pred CccEEEEEeCCCeEEEEecCCCCcee--EecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEec---
Q 002494 510 SIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS--- 584 (915)
Q Consensus 510 ~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~--- 584 (915)
.+|++|+.|++|++||+....... .......++.+++|+|.|.+++++.. ...+++||+.+.++...-.
T Consensus 185 --~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd----Hp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 185 --TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD----HPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred --heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC----CCceeEEeccceeEeeecCccc
Confidence 799999999999999997654433 22234568999999999999999974 6779999999988765432
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 585 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
.|.+ .|+++.+++.|++.++++.||.|++||--+++++.++....+...|.+..|..+|++|.+.+.|..+++|.+.++
T Consensus 259 qht~-ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 259 QHTG-AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred cccc-ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 3555 899999999999999999999999999999999998865444458999999999999999999999999999999
Q ss_pred ceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCC
Q 002494 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (915)
Q Consensus 665 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~ 744 (915)
++++.+.|....-. +.+ .++.+|.....++.+-++
T Consensus 338 -R~l~~YtGAg~tgr--------------q~~------------------------------rtqAvFNhtEdyVl~pDE 372 (430)
T KOG0640|consen 338 -RMLKEYTGAGTTGR--------------QKH------------------------------RTQAVFNHTEDYVLFPDE 372 (430)
T ss_pred -ceEEEEecCCcccc--------------hhh------------------------------hhhhhhcCccceEEcccc
Confidence 77777765421100 000 123345555555555555
Q ss_pred --CceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEeeccceeEEee
Q 002494 745 --DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWK 800 (915)
Q Consensus 745 --~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~ 800 (915)
+.+.-||..+..... +...+|.+.+..+.-||.+.-+++++.|..++.|-
T Consensus 373 as~slcsWdaRtadr~~------l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 373 ASNSLCSWDARTADRVA------LLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred ccCceeeccccchhhhh------hcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 677889877522211 11124999999999999999999999999999994
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=246.63 Aligned_cols=279 Identities=16% Similarity=0.238 Sum_probs=238.1
Q ss_pred EEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEEC
Q 002494 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (915)
Q Consensus 349 V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~ 428 (915)
..-+.|+..+ +||+|. ...|++|+..+++.... ...+...|+++.|+++|++|++|..
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence 3456788555 467664 56899999999875432 1223789999999999999999999
Q ss_pred CCeEEEEEecCCCceeeeEEeec-ccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEE-ecCCCCCEEEEEee
Q 002494 429 KHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPH 506 (915)
Q Consensus 429 dg~i~vwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~i~~~ 506 (915)
+|.|.|||....+.++ .+.+ |...|-+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999998877665 5566 99999999997 33 689999999999999998766554 88899999999998
Q ss_pred cCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCC-CEEEEEeecCCCCceEEEEECCCCeeEEEecC
Q 002494 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (915)
Q Consensus 507 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (915)
+++ .++++|+.|+.+.|||.........+..|...|..++|+|-. ..||+|+. ..|+.|++||..+|..+.....
T Consensus 311 ~d~--~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 PDG--NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred CCC--CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 854 899999999999999998888889999999999999999954 46677664 4689999999999999888765
Q ss_pred CCCCceEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 002494 586 FRKRSLGVVQFDTTRNRFLAA--GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (915)
Q Consensus 586 ~~~~~v~~~~~sp~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 663 (915)
.. .|..+.|++..+-|+++ ..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+
T Consensus 387 gs--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 387 GS--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CC--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 54 79999999998877773 4677999999999999999998877 799999999999999999999999999876
Q ss_pred C
Q 002494 664 G 664 (915)
Q Consensus 664 ~ 664 (915)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 4
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=223.19 Aligned_cols=312 Identities=16% Similarity=0.199 Sum_probs=238.8
Q ss_pred EEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC
Q 002494 339 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (915)
Q Consensus 339 ~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 418 (915)
....-.|++.+.+.+|||||. ++|+|+.|..|+|.|++..-... ....+..-...........+.+|...|+++.|+|
T Consensus 105 t~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred eEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 344445999999999999997 89999999999999997311000 0000000000001112234678999999999999
Q ss_pred CCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEe---cC
Q 002494 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF---EG 495 (915)
Q Consensus 419 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~---~~ 495 (915)
....|++|+.|++|+++|+......+....+ ....+|.++.|+|.|. +++.|..-.++++||+.+-++...- ..
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~q 259 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQ 259 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcccc
Confidence 9999999999999999999764332222222 3456899999999999 8899999999999999998876543 35
Q ss_pred CCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEec-CC-CCcEEEEEECCCCCEEEEEeecCCCCceEEEEE
Q 002494 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-AP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (915)
Q Consensus 496 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~-~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd 573 (915)
|.+.|+++.+++. |.+.++++.||.|++||--+.+++..+. .| +..|.+..|..+|+++++.+. |..+++|.
T Consensus 260 ht~ai~~V~Ys~t--~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLWE 333 (430)
T KOG0640|consen 260 HTGAITQVRYSST--GSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLWE 333 (430)
T ss_pred cccceeEEEecCC--ccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeeee
Confidence 8899999999875 4799999999999999988777776554 33 348999999999999999874 88899999
Q ss_pred CCCCeeEEEecCCCCC----ceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEE
Q 002494 574 ESEGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (915)
Q Consensus 574 ~~~~~~~~~~~~~~~~----~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 648 (915)
+.+++++..+.|.... --+...|+....+++.-. ..+.+.-||.+++..+..+.. ++.+.+..+.-||.+..+.
T Consensus 334 i~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~Fm 412 (430)
T KOG0640|consen 334 ISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAFM 412 (430)
T ss_pred ecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCcee
Confidence 9999999999875210 123345777777777654 356799999999877666543 3344899999999999999
Q ss_pred EEeCCCcEEEEEcC
Q 002494 649 VTTSDNGIKILANS 662 (915)
Q Consensus 649 s~~~dg~i~iwd~~ 662 (915)
+|+.|..+++|--.
T Consensus 413 TcsdD~raRFWyrr 426 (430)
T KOG0640|consen 413 TCSDDFRARFWYRR 426 (430)
T ss_pred eecccceeeeeeec
Confidence 99999999999743
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=213.79 Aligned_cols=267 Identities=15% Similarity=0.200 Sum_probs=218.9
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeC--CCcEEE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--DKMIKV 481 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~--d~~i~v 481 (915)
+....+.|.++.|+++|.++++++.|.++++||..+++..+ .+..++-.+..++|...... ++.++. |.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~~--~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSNT--VIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCce--EEEccCCCCCceEE
Confidence 55567899999999999999999999999999999998776 55567778999999887774 555555 889999
Q ss_pred EEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 002494 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (915)
Q Consensus 482 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~ 561 (915)
.++.+.+.++.|.||...|++++.+|.+ ..+++++.|++|++||++..++...+.....+ .++|+|+|-.+|++..
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANG 160 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecC
Confidence 9999999999999999999999999976 68999999999999999988877766655544 4789999998888863
Q ss_pred cCCCCceEEEEECCCC--eeEEEecCC--CCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCc-c
Q 002494 562 SKEGESHLVEWNESEG--AIKRTYSGF--RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS-P 636 (915)
Q Consensus 562 ~~~~~~~i~~wd~~~~--~~~~~~~~~--~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~ 636 (915)
...|++||++.- .+..++.-. .....+.+.|||||++++.+...+.+++.|.-+|....++..+.....+ -
T Consensus 161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 337999999853 344444322 2237889999999999999999999999999999999998876543322 4
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccC-CCCcccccCCC
Q 002494 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG-RAMDKNRCPSE 684 (915)
Q Consensus 637 ~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~ 684 (915)
+.+|+||++++++|+.||+|++|++++| ..+..+.+ +...+..+.+.
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg-~~v~~~~~~~~~~~~~~~fn 284 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETG-KKVAVLRGPNGGPVSCVRFN 284 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCC-cEeeEecCCCCCCccccccC
Confidence 6789999999999999999999999999 45555555 45555555544
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-27 Score=235.84 Aligned_cols=304 Identities=16% Similarity=0.222 Sum_probs=232.3
Q ss_pred cccEEEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEE
Q 002494 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (915)
Q Consensus 336 ~~~~~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 414 (915)
++..-..+. |...|.++++.|.|.+ +++|+.|-+|++||+........ .+ ..+.......|.++
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~f-------------r~l~P~E~h~i~sl 220 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SF-------------RQLQPCETHQINSL 220 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hh-------------hccCccccccccee
Confidence 344444555 6788999999999985 79999999999999987542211 01 11123355689999
Q ss_pred EEcCCCCEEEEEECCCeEEEEEecCCCce---------eeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcC
Q 002494 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGEL---------RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (915)
Q Consensus 415 ~~spd~~~l~s~~~dg~i~vwd~~~~~~~---------~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~ 485 (915)
+|++.|..|++.+.....+|+|-.+.... ......+||...++|.+|+|+.+. .|+|++.||++++||+.
T Consensus 221 ~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 221 QYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecC
Confidence 99999999999998899999997653322 222345689999999999999988 79999999999999998
Q ss_pred CCee-EEEec-----CCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCcee---EecCCCC--cEEEEEECCCCC
Q 002494 486 AGRK-QYTFE-----GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGN--WCTMMAYSADGT 554 (915)
Q Consensus 486 ~~~~-~~~~~-----~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~--~i~~~~~sp~g~ 554 (915)
..+. ...++ +..-+++.++|+++ |+.|++|+.||.|.+|+........ .-..|.. .|+|++||+||+
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrd--g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRD--GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCCC--cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence 6542 22232 34456788888774 5789999999999999976543322 2234444 899999999999
Q ss_pred EEEEEeecCCCCceEEEEECCCCe-eEEEecCCCC-CceEEEEEcCCCCEEEEEe------CCCcEEEEeCCCCceEEEE
Q 002494 555 RLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRK-RSLGVVQFDTTRNRFLAAG------DEFQIKFWDMDNMNMLTTV 626 (915)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~-~~v~~~~~sp~~~~l~s~~------~dg~i~iwd~~~~~~~~~~ 626 (915)
+|++-+. |.++++||++..+ ++....+-.. ..-+.++|||+.+++++|. ..|++.+||..+...+..+
T Consensus 378 ~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 378 YLLSRGF----DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred hhhhccC----CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 9998875 7789999998654 4444444322 1456789999999999986 3578999999999999888
Q ss_pred cCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 002494 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (915)
Q Consensus 627 ~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 663 (915)
..... .|..+.|+|.-+.|.+|+.||++++|--.+
T Consensus 454 ~i~~a--Svv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 454 DISTA--SVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred cCCCc--eEEEEeecchhhheeeecCCCceEEEECcc
Confidence 77644 788999999988999999999999985443
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-27 Score=216.81 Aligned_cols=257 Identities=11% Similarity=0.216 Sum_probs=212.1
Q ss_pred CCCcccEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeE
Q 002494 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (915)
Q Consensus 333 d~~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 412 (915)
+...-+..+.+.-.+.+..++||+.....+++++.||++++||..... .+...++.|...|.
T Consensus 47 ~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s------------------~Pi~~~kEH~~EV~ 108 (311)
T KOG0277|consen 47 DPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS------------------KPIHKFKEHKREVY 108 (311)
T ss_pred CCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC------------------cchhHHHhhhhheE
Confidence 344445667777889999999999988889999999999999954321 13334788999999
Q ss_pred EEEEcC-CCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEE
Q 002494 413 RCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (915)
Q Consensus 413 ~~~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 491 (915)
++.|++ ++..+++++-|++|++|+...++.+. ++.+|..-|...+|+|.... ++++++.|+++++||++......
T Consensus 109 Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~ 184 (311)
T KOG0277|consen 109 SVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFM 184 (311)
T ss_pred EeccccccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCcee
Confidence 999999 56678888999999999998877666 68899999999999998887 89999999999999998644444
Q ss_pred EecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCce-eEecCCCCcEEEEEECCCCC-EEEEEeecCCCCceE
Q 002494 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHL 569 (915)
Q Consensus 492 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~sp~g~-~l~~~~~~~~~~~~i 569 (915)
.+..|...+.++.|+... ...++||+.|+.|+.||+++.+.+ ..+.+|+-.|..+.|||... .|++++. |-++
T Consensus 185 ~i~ah~~Eil~cdw~ky~-~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~ 259 (311)
T KOG0277|consen 185 SIEAHNSEILCCDWSKYN-HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTV 259 (311)
T ss_pred EEEeccceeEeecccccC-CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceE
Confidence 588999999999998764 479999999999999999976644 46788888999999999765 5667765 7789
Q ss_pred EEEECCCC-eeEEEecCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 002494 570 VEWNESEG-AIKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDM 617 (915)
Q Consensus 570 ~~wd~~~~-~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~ 617 (915)
++||...+ ..+.++..|.. .+..+.|++ ++.++|+++.|+.++||+.
T Consensus 260 riw~~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 260 RIWDPERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred Eecccccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 99998744 34556666665 889999988 5678999999999999984
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=235.09 Aligned_cols=252 Identities=19% Similarity=0.264 Sum_probs=212.0
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd 483 (915)
+..|.+.+..+.|-++...|++|+.|..|++|+...++ ......+.+..++|+.+.|.+++. .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 46699999999999999999999999999999998765 223336778888999999999999 688899999999999
Q ss_pred cCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecC
Q 002494 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (915)
Q Consensus 484 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~ 563 (915)
+.+.+...++.+|.+.|+++.|.... ..+++|+.|.+|+.||+....+..... ....+..|+.+ +..++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 99999999999999999999987654 349999999999999999866655433 34456666665 445556554
Q ss_pred CCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCC--CCCCcceEEEc
Q 002494 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG--GLPASPRLRFN 641 (915)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~v~~s 641 (915)
|..|++||.+++.+......+. .|+++..+++|..+.+++.|.++.+.|+++.+....+...+ .....+.+.||
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred --ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 6679999999999999988776 79999999999999999999999999999988887776432 22358899999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002494 642 KEGSLLAVTTSDNGIKILANSDGVRLLRM 670 (915)
Q Consensus 642 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 670 (915)
|++.|+++|+.||.|+||++.++ ++...
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tg-KlE~~ 424 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTG-KLEKV 424 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCc-eEEEE
Confidence 99999999999999999999988 44433
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=224.43 Aligned_cols=262 Identities=15% Similarity=0.210 Sum_probs=215.5
Q ss_pred CCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCC-eEEEEEEeCCCcEEEEEc
Q 002494 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK-QLCIVTCGDDKMIKVWDV 484 (915)
Q Consensus 406 ~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~~~l~s~~~d~~i~vwd~ 484 (915)
.|...|.++.-. ++++++|+.||.+++||..+ +... .+.+|.++|.+++|.-.+. .-.|++++.|.++++|..
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-k~~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-KSIK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCC-ceEE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 478888888877 78999999999999999876 3333 6789999999888854332 115999999999999998
Q ss_pred CCCee----EEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCC-------------------------CCcee
Q 002494 485 VAGRK----QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-------------------------LGSRV 535 (915)
Q Consensus 485 ~~~~~----~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~-------------------------~~~~~ 535 (915)
+.+.. +..-.||...|.++...+ +|..+++|+.|.+|.+|+..+ .....
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~--sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSVDS--SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEecC--CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 87643 233348999999999866 458999999999999998311 12344
Q ss_pred EecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 002494 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615 (915)
Q Consensus 536 ~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 615 (915)
.+.+|..+|.++.|++ ...+++++. |.+|+.||+.++..+.++.+.. .+.++..+|..++|++|+.|..+++|
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~k--sl~~i~~~~~~~Ll~~gssdr~irl~ 327 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSW----DHTIKVWDLETGGLKSTLTTNK--SLNCISYSPLSKLLASGSSDRHIRLW 327 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecc----cceEEEEEeecccceeeeecCc--ceeEeecccccceeeecCCCCceeec
Confidence 6778999999999988 557778775 8889999999999999888765 79999999999999999999999999
Q ss_pred eCCCCc---eEEEEcCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCC
Q 002494 616 DMDNMN---MLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSE 684 (915)
Q Consensus 616 d~~~~~---~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 684 (915)
|.+++. ...++.+|.. .|.++.|+| +...|++++.|+++++||+.+.+..+..+.+|.+.|.++.+.
T Consensus 328 DPR~~~gs~v~~s~~gH~n--wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 328 DPRTGDGSVVSQSLIGHKN--WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN 398 (423)
T ss_pred CCCCCCCceeEEeeecchh--hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc
Confidence 998753 3355666655 899999999 566889999999999999999877999999999888876554
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-26 Score=239.67 Aligned_cols=261 Identities=17% Similarity=0.288 Sum_probs=224.1
Q ss_pred eeecCCCcccEEEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCC-
Q 002494 329 VYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND- 406 (915)
Q Consensus 329 ~~~~d~~~~~~~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 406 (915)
++.|+..++.+..... +.+.|+++.|+++|. .||+|..+|.|.|||..+.+.+.. +..
T Consensus 199 vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~ 258 (484)
T KOG0305|consen 199 VYLWSASSGSVTELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRGS 258 (484)
T ss_pred EEEEecCCCceEEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccCC
Confidence 3445555565555544 489999999999998 689999999999999998776654 344
Q ss_pred CccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCC
Q 002494 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~ 486 (915)
|...|-+++|+ +..+.+|+.++.|..+|+...+.... .+.+|...|..+.|++|+. ++++|+.|+.+.|||...
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLS 332 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCC
Confidence 99999999998 77899999999999999998776543 3778999999999999999 799999999999999988
Q ss_pred CeeEEEecCCCCCEEEEEeecCCCccEEEEEe--CCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCC
Q 002494 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (915)
Q Consensus 487 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~ 564 (915)
..++..+..|...|.+++|+|-.. .+|++|+ .|+.|++||..++..+.... .+..|.++.|++..+-|+++.. .
T Consensus 333 ~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG--~ 408 (484)
T KOG0305|consen 333 PEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHG--Y 408 (484)
T ss_pred ccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecC--C
Confidence 888999999999999999999866 4888865 59999999999776665544 5678999999999988876653 2
Q ss_pred CCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 002494 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (915)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 620 (915)
.++.|.+|+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 409 s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 409 SENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 466799999999999999999999 8999999999999999999999999999764
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=245.35 Aligned_cols=255 Identities=17% Similarity=0.192 Sum_probs=202.6
Q ss_pred CccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCce----------eeeEEeecccCCeeEEEEec-CCCeEEEEEEeC
Q 002494 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL----------RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGD 475 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~----------~~~~~~~~h~~~v~~~~~s~-~~~~~~l~s~~~ 475 (915)
+-..|.....++|+..+++++.+.....|+..++..+ .....+.+|.+.|.+++|+| ++. +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3445666667778777777777777777775544321 11124678999999999999 666 7999999
Q ss_pred CCcEEEEEcCCC-------eeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEE
Q 002494 476 DKMIKVWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (915)
Q Consensus 476 d~~i~vwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 548 (915)
|++|++||+.++ ..+..+.+|...|.+++|+|... ++|++++.|++|++||+++......+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 35678889999999999998643 6899999999999999998888878888888999999
Q ss_pred ECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe----CCCcEEEEeCCCCc-eE
Q 002494 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMN-ML 623 (915)
Q Consensus 549 ~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~----~dg~i~iwd~~~~~-~~ 623 (915)
|+|+|.+|++++. |+.|++||+++++.+..+.+|.+.....+.|.+++..+++++ .|+.|++||+++.. ++
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999874 788999999999999999888764456778999888888754 47899999998754 33
Q ss_pred EEEcCCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCCceeeee
Q 002494 624 TTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRM 670 (915)
Q Consensus 624 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~ 670 (915)
.....+. ...+....|+++++++++++ .|+.|++||+.++ ++...
T Consensus 252 ~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~-~~~~~ 297 (493)
T PTZ00421 252 STVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE-RLTFC 297 (493)
T ss_pred eEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC-ceEEE
Confidence 3333332 22455678999999999888 5999999999988 44443
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-27 Score=228.94 Aligned_cols=282 Identities=12% Similarity=0.178 Sum_probs=229.4
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
|.++|.|++=+|..-..+++|+.||.|+|||+...++... +..|.+.|..++++. ..++
T Consensus 65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~--~~~~ 123 (433)
T KOG0268|consen 65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ--TSFF 123 (433)
T ss_pred cccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc--cceE
Confidence 8999999999998844689999999999999998877654 678999999999987 7889
Q ss_pred EEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEE
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~ 504 (915)
+++.|.+|+.|.++.. ..+ .+.+ ...+..+.-+..+. .++|+|. .|.|||.....++..+.-....|.++.
T Consensus 124 tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svk 194 (433)
T KOG0268|consen 124 TVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVK 194 (433)
T ss_pred EecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeEEe
Confidence 9999999999998873 222 3322 34566676666666 6888876 599999988889999987888999999
Q ss_pred eecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCC-eeEEEe
Q 002494 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTY 583 (915)
Q Consensus 505 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~ 583 (915)
|+|... ..|++|+.|+.|.+||+++...+..... ...-+.++|+|.+-.++++. +|..++.+|++.- .++..+
T Consensus 195 fNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~~p~~v~ 268 (433)
T KOG0268|consen 195 FNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLSRPLNVH 268 (433)
T ss_pred cCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhcccchhh
Confidence 999754 5888899999999999998877664432 33457899999665555554 4778999999864 467778
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 002494 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (915)
Q Consensus 584 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 663 (915)
.+|.. .|.++.|||.|+-|++||.|.+|+||..+.+.-...+... -...|.++.||.|.+++++|++|+.|++|....
T Consensus 269 ~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 269 KDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred cccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 88887 8999999999999999999999999999877544333222 123689999999999999999999999998765
Q ss_pred C
Q 002494 664 G 664 (915)
Q Consensus 664 ~ 664 (915)
.
T Consensus 347 s 347 (433)
T KOG0268|consen 347 S 347 (433)
T ss_pred h
Confidence 4
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-27 Score=228.12 Aligned_cols=284 Identities=15% Similarity=0.211 Sum_probs=229.6
Q ss_pred EeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEe
Q 002494 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (915)
Q Consensus 448 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd 527 (915)
.+.+|...|.|++=+|..-. .+++|+.||.|++||+.+..+..++.+|.+.|..+++.. ..++++++|.+|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46789999999999998743 699999999999999999999999999999999999965 4699999999999998
Q ss_pred cCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCC-EEEEE
Q 002494 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAA 606 (915)
Q Consensus 528 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~ 606 (915)
++.. ....+. ....+..+.-+..+..+++||. .|.+||..-..++..+.-..+ .|.++.|+|... .|+++
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCCC-ceeEEecCCCcchheeee
Confidence 7752 222222 3445666766667778888874 289999988889999887766 899999999765 45556
Q ss_pred eCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCC
Q 002494 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686 (915)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 686 (915)
+.|+.|.+||++.+.++..+.... .-+.++|+|.+-.+++|+.|..++.||+....+.+....+|...|..+
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dV----- 278 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDV----- 278 (433)
T ss_pred ccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEe-----
Confidence 799999999999999988775543 347899999888999999999999999998877888888887766644
Q ss_pred CCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCC-CceeEeecCCCCCccceeEee
Q 002494 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALR 765 (915)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~~~~~~~~~~~~~~ 765 (915)
.|||.|+-+++|+- .+|+||.+...........-+
T Consensus 279 --------------------------------------------dfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR 314 (433)
T KOG0268|consen 279 --------------------------------------------DFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR 314 (433)
T ss_pred --------------------------------------------ccCCCcchhccccccceEEEeecCCCcchhhhhHhh
Confidence 57788888888777 899999988632222221111
Q ss_pred cCCccCCCceEEEEEecCCceEEEeeccceeEEeeccc
Q 002494 766 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (915)
Q Consensus 766 ~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~ 803 (915)
-..|.|+.||.|.+|+++|++|+.|++|.-..
T Consensus 315 ------Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 315 ------MQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred ------hheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 12589999999999999999999999998654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=228.07 Aligned_cols=297 Identities=15% Similarity=0.205 Sum_probs=217.3
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCce-eeeEEe-ecccCCeeEEEEecCCCeEEEEEEeCCCcEEE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEI-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~-~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~v 481 (915)
+.+|...|.++++.|.|..|++|+.|.+|++||+...... +....+ ......|.++.|++.|.+ |++.+.....+|
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~--iLvvsg~aqakl 240 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQ--ILVVSGSAQAKL 240 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCe--EEEEecCcceeE
Confidence 5779999999999999999999999999999999864321 111122 123347999999999996 444444568999
Q ss_pred EEcCCCeeEEEe-------------cCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEE
Q 002494 482 WDVVAGRKQYTF-------------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (915)
Q Consensus 482 wd~~~~~~~~~~-------------~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 548 (915)
+| +.|..+..+ ++|...+++.+|+|... +.+++++.||++|+||++..+..
T Consensus 241 ~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q-------------- 304 (641)
T KOG0772|consen 241 LD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQ-------------- 304 (641)
T ss_pred Ec-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc-cceEEecCCCcEEEEecCCchhh--------------
Confidence 99 566544333 47888999999999854 68889999999999998753311
Q ss_pred ECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--e-EEE
Q 002494 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--M-LTT 625 (915)
Q Consensus 549 ~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~--~-~~~ 625 (915)
..++-.+.. .+..- .++.++|+|+|++||+|+.||.|.+|+..+.. + ...
T Consensus 305 --------------------~qVik~k~~------~g~Rv-~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v 357 (641)
T KOG0772|consen 305 --------------------LQVIKTKPA------GGKRV-PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV 357 (641)
T ss_pred --------------------eeEEeeccC------CCccc-CceeeecCCCcchhhhcccCCceeeeecCCcccccceEe
Confidence 111111100 01122 67889999999999999999999999986432 2 222
Q ss_pred EcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccc
Q 002494 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 705 (915)
Q Consensus 626 ~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (915)
-..|.....|++++||+||++|++-+.|+++++||+...++++....+-..
T Consensus 358 k~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t----------------------------- 408 (641)
T KOG0772|consen 358 KDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT----------------------------- 408 (641)
T ss_pred eeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCc-----------------------------
Confidence 345555558999999999999999999999999999987666555443221
Q ss_pred cCCcccCCCCCCCCcccccccCCCceeccCCceeeccCC-------CceeEeecCCCCCccceeEeecCCccCCCceEEE
Q 002494 706 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-------DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRL 778 (915)
Q Consensus 706 ~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-------~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l 778 (915)
.+..++++||||.++|++++. +++.+|+..+ -.....+.+ ....|..+
T Consensus 409 ------------------~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t---~d~v~ki~i----~~aSvv~~ 463 (641)
T KOG0772|consen 409 ------------------PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT---LDTVYKIDI----STASVVRC 463 (641)
T ss_pred ------------------cCCCCccccCCCceEEEecccccCCCCCceEEEEeccc---eeeEEEecC----CCceEEEE
Confidence 223467799999999999865 5778888664 222332222 46678899
Q ss_pred EEecCCceEEEeeccceeEEe
Q 002494 779 IYTNSGLSLLALASNAVHKLW 799 (915)
Q Consensus 779 ~~s~d~~~l~~~~~dg~v~iW 799 (915)
.|+|.-..+++|+.||++++|
T Consensus 464 ~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 464 LWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred eecchhhheeeecCCCceEEE
Confidence 999998889999999999876
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-24 Score=239.75 Aligned_cols=256 Identities=13% Similarity=0.136 Sum_probs=195.2
Q ss_pred EeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCC-CCEEEEEECCCeEEEEEecCCCc-
Q 002494 365 GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGE- 442 (915)
Q Consensus 365 gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-~~~l~s~~~dg~i~vwd~~~~~~- 442 (915)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.||+|++||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4556777777765543222 26789999999999996 78999999999999999986432
Q ss_pred e----eeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEe
Q 002494 443 L----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (915)
Q Consensus 443 ~----~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~ 518 (915)
. .....+.+|...|.+++|+|++.. ++++++.|++|++||+++++.+..+. |...|.+++|+++ |.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd--G~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK--GNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC--CCEEEEEe
Confidence 1 112256789999999999999875 56899999999999999998877775 6678999999885 47999999
Q ss_pred CCCeEEEEecCCCCceeEecCCCCcEE-----EEEECCCCCEEEEEeecCCCCceEEEEECCC-CeeEEEecCCCCC-ce
Q 002494 519 IDGKIKAWLYDYLGSRVDYDAPGNWCT-----MMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKR-SL 591 (915)
Q Consensus 519 ~dg~i~iwd~~~~~~~~~~~~~~~~i~-----~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~-~v 591 (915)
.|+.|++||++++.....+..|.+.+. ...|++++.++++++.++..++.|++||++. ++++..+..+... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 999999999999888877877776433 2345689999999887654457899999985 5566555433321 33
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCC
Q 002494 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (915)
Q Consensus 592 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 644 (915)
......++|.++++|+.|++|++|++..+. +..+.......++.+++|.|+.
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 333335568889999999999999998764 4444443344578899999954
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-26 Score=237.06 Aligned_cols=287 Identities=20% Similarity=0.261 Sum_probs=233.9
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCC
Q 002494 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (915)
Q Consensus 351 ~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg 430 (915)
++..++.+.++|++|+.||.|++|++.......+. + ....+..|...|+.++...+|+.|+++|.|-
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~------------~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPST------------P-YIASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCccc------------c-hhhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 55566544446899999999999998764332110 0 1122567999999999999999999999999
Q ss_pred eEEEEEecCCCceeeeEEeecccCCeeEEEE-ecCCCeEEEEEEeCCCcEEEEEcCCCe--eEEE--------ec-CCCC
Q 002494 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAF-AHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYT--------FE-GHEA 498 (915)
Q Consensus 431 ~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~-s~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~--------~~-~~~~ 498 (915)
+|++|+...+. ......+..|.+.|.|+++ .++.. ++++||-|+.|.+||+.++. .+.+ +. ++..
T Consensus 96 TVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 99999998764 2222367789999999999 66666 89999999999999999772 2222 22 6788
Q ss_pred CEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCe
Q 002494 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (915)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (915)
.|.+++.++. |..|++|+..+.+++||-++.+....+.+|...|..+..++||+.+++++. |++|++||+...+
T Consensus 173 siYSLA~N~t--~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 173 SIYSLAMNQT--GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQR 246 (735)
T ss_pred ceeeeecCCc--ceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccc
Confidence 8999998764 479999999999999999999999999999999999999999999999985 8899999999999
Q ss_pred eEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 002494 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (915)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~i 658 (915)
++.++..|.. .|.++..+|+-..+++|+.||.|+.=|+++......+-...+ +|..+..+...+-+-+++.|+.|+-
T Consensus 247 Cl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 247 CLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred eeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhccccCCceeeecccccee
Confidence 9999999998 699999999999999999999999999998533333333333 6777877765555578888999999
Q ss_pred EEcC
Q 002494 659 LANS 662 (915)
Q Consensus 659 wd~~ 662 (915)
|...
T Consensus 324 W~~~ 327 (735)
T KOG0308|consen 324 WKLE 327 (735)
T ss_pred cCCc
Confidence 9765
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-25 Score=219.43 Aligned_cols=283 Identities=15% Similarity=0.218 Sum_probs=242.9
Q ss_pred CCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEE
Q 002494 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (915)
Q Consensus 346 ~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s 425 (915)
...+.++...|... .+.+|+.|..+.++|..+++.+.. +.+|...|+.+.|+|+...+++
T Consensus 219 ~pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~ 278 (506)
T KOG0289|consen 219 TPGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVIT 278 (506)
T ss_pred CCCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheee
Confidence 34788888888854 578999999999999999887654 7899999999999999999999
Q ss_pred EECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecC--CCCCEEEE
Q 002494 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSV 503 (915)
Q Consensus 426 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~i 503 (915)
++.|..|+||......+.. ....|..+|+.+..+|.|. ||++++.|++..+.|++++..+..... ..-.+++.
T Consensus 279 aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~ 353 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA 353 (506)
T ss_pred cCCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe
Confidence 9999999999987765433 5668999999999999999 899999999999999999998876653 23458899
Q ss_pred EeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEe
Q 002494 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (915)
Q Consensus 504 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (915)
+|+|++ .++.+|..||.+++||+........+.+|.++|..++|+.+|.++++++. |+.|++||++.-+...++
T Consensus 354 ~fHpDg--Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 354 AFHPDG--LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred eEcCCc--eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhccccee
Confidence 999954 79999999999999999999988899999999999999999999999985 667999999988888888
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 002494 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (915)
Q Consensus 584 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 661 (915)
.......+.++.|.+.|.+|++++.|=+|++++-.+. ..+..+..+. +..+++.|....+++++++.|..++++.+
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS--GLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc--cccceeeecccceEEeeccchhheEEeec
Confidence 7766557999999999999999988877777775543 4444444444 37789999999999999999999888764
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=208.24 Aligned_cols=268 Identities=19% Similarity=0.268 Sum_probs=215.8
Q ss_pred CCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEE
Q 002494 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (915)
Q Consensus 346 ~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s 425 (915)
.+.|..|.|+|.+..| ++++.||++++||+...+... .-.|..++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~L-LvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDL-LVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCcE-EEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEEE
Confidence 6789999999998865 456799999999999875443 234899999999987 567889
Q ss_pred EECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEe
Q 002494 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (915)
Q Consensus 426 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 505 (915)
|+.||.|+.+|++++... .+..|..+|.|+.+++... .+++||.|++|++||.+.......+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 999999999999997654 4667999999999998777 69999999999999998765555554 3458888876
Q ss_pred ecCCCccEEEEEeCCCeEEEEecCCCCceeEec--CCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCC----ee
Q 002494 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG----AI 579 (915)
Q Consensus 506 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~----~~ 579 (915)
. ++.|+.|+.|..+.+||+++........ .-.-.+.++++.|++.-.++++- +|.+.+=.+... +.
T Consensus 144 ~----g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 144 S----GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred c----CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence 3 4689999999999999999877655322 22337899999998776676664 666766555544 33
Q ss_pred EEEecCCCC--------CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEe
Q 002494 580 KRTYSGFRK--------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (915)
Q Consensus 580 ~~~~~~~~~--------~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 651 (915)
...|+.|.. .+|++++|+|-.+.|++|+.||.|.+||+.+.+.+..+..... .|.+++|+.+|..||+++
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~--SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYET--SISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCC--ceEEEEeccCCCeEEEEe
Confidence 455666543 2789999999999999999999999999999998888876533 799999999999999997
Q ss_pred C
Q 002494 652 S 652 (915)
Q Consensus 652 ~ 652 (915)
.
T Consensus 294 s 294 (323)
T KOG1036|consen 294 S 294 (323)
T ss_pred c
Confidence 5
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=221.48 Aligned_cols=293 Identities=14% Similarity=0.217 Sum_probs=229.6
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeec----ccCcccccccccCCCccCeEEEEEcCCC
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI----SAASMPLQNALLNDAAISVNRCVWGPDG 420 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~spd~ 420 (915)
|.-+|.||+++||+++ .++++.+|+|.-|++.+|+.... +|.- .....+....- ..|...+.+++.|+||
T Consensus 141 H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSDG 214 (479)
T ss_pred ccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcCCC
Confidence 8889999999999984 78999999999999999875421 1111 00001111111 3799999999999999
Q ss_pred CEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCE
Q 002494 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (915)
Q Consensus 421 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 500 (915)
+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|+++++|++.....+.++.+|.+.|
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v 289 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDGV 289 (479)
T ss_pred cEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence 999999999999999999987666 6789999999999976666 58999999999999999988889999999999
Q ss_pred EEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeE
Q 002494 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (915)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (915)
.++..... +..+.+|+.|+++++|++. ......+.++.+.+-|++|-.+ .++++|+. +|.|.+|++...+++
T Consensus 290 ~~IdaL~r--eR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 290 LGIDALSR--ERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSLLKKKPL 361 (479)
T ss_pred eeechhcc--cceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeeecccCce
Confidence 99976543 3566667799999999994 4445566777888999999655 46777774 788999999988887
Q ss_pred EEecCCCC-----------CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ceEEEEcCCCCCCCcceEEEcCCCC
Q 002494 581 RTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGGLPASPRLRFNKEGS 645 (915)
Q Consensus 581 ~~~~~~~~-----------~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~s~~~~ 645 (915)
.+....++ ..|++++..|...++++|+.+|.|++|.+..+ +++..+... +-|++++|+++|+
T Consensus 362 f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 362 FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLAFSNSGK 438 (479)
T ss_pred eEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEEEccCCC
Confidence 76542111 16889999999999999999999999999877 444555433 3799999999999
Q ss_pred EEEEE-eCCCcEEEE
Q 002494 646 LLAVT-TSDNGIKIL 659 (915)
Q Consensus 646 ~l~s~-~~dg~i~iw 659 (915)
.|++| +....+-=|
T Consensus 439 ~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 439 RIVAGIGKEHRLGRW 453 (479)
T ss_pred EEEEeccccccccee
Confidence 66665 333334334
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=244.12 Aligned_cols=245 Identities=21% Similarity=0.306 Sum_probs=216.8
Q ss_pred CccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCC
Q 002494 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~ 486 (915)
+...+.+..|. +.++++++.+++|++|+..++..+.. .+.+|.+.|+++++...+. .+++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 56678888888 66899999999999999999876652 3789999999999977455 799999999999999999
Q ss_pred CeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCC
Q 002494 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (915)
Q Consensus 487 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~ 566 (915)
|.+...+.+|...|.++...+ ..+++|+.|.+|++|++.++..+..+.+|..+|.++..+ +.++++++. +
T Consensus 281 g~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 999999999999999998744 478889999999999999999998888899999999987 778888886 6
Q ss_pred ceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceEEEEcCCCCCCCcceEEEcCCCC
Q 002494 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGS 645 (915)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~ 645 (915)
+.|.+||..+++++..+.+|.. .|.++.+.+. ..+++|+.|++|++||+++. +++..+.+|.. .+..+. ..++
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~--~v~~l~--~~~~ 424 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS--LVSSLL--LRDN 424 (537)
T ss_pred ceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc--cccccc--cccc
Confidence 7899999999999999999998 8999988765 89999999999999999999 89999998876 444443 4589
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeccCC
Q 002494 646 LLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (915)
Q Consensus 646 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 674 (915)
+|++++.|++|++||..++ ++++.+.++
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~~ 452 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEG-ECLRTLEGR 452 (537)
T ss_pred eeEeccccccEEEeecccC-ceeeeeccC
Confidence 9999999999999999999 888888873
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.6e-25 Score=226.05 Aligned_cols=203 Identities=17% Similarity=0.225 Sum_probs=144.2
Q ss_pred EEEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEc
Q 002494 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (915)
Q Consensus 339 ~~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 417 (915)
.+..+. |.+.|+.+.|+|-...+||+|+.|..|+||.+..|-... .......+.+..-.|.|+.|+
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fH 137 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFH 137 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecc
Confidence 344455 999999999999777799999999999999998553221 011222345566789999999
Q ss_pred CCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCC-CeeEEEecCC
Q 002494 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGH 496 (915)
Q Consensus 418 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~ 496 (915)
|...-|+..+..|.++|||+.+++.+. .+.+|...|.++.|+.||. ++++++.|+.|+|||.+. ++.++..++|
T Consensus 138 pTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 138 PTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred cCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccc
Confidence 987777777778999999999987655 7889999999999999999 899999999999999875 5778888888
Q ss_pred CCCEEEEEeecCCCccEEEEEeCC----CeEEEEecCCCCcee-EecC-CCCcEEEEEECCCCCEEEEEe
Q 002494 497 EAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRV-DYDA-PGNWCTMMAYSADGTRLFSCG 560 (915)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~-~~~~-~~~~i~~~~~sp~g~~l~~~~ 560 (915)
.+. ..-.+..-++-..|++.+.+ ..|++||.+...... .+.. ....|.---|.||.++++.++
T Consensus 213 ~~~-rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG 281 (1012)
T KOG1445|consen 213 GGM-RDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG 281 (1012)
T ss_pred ccc-hhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec
Confidence 754 32222222333466666654 468999987654332 1111 111233334556665555444
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-25 Score=231.23 Aligned_cols=284 Identities=15% Similarity=0.298 Sum_probs=237.9
Q ss_pred ccEEEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEE-E
Q 002494 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR-C 414 (915)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~ 414 (915)
.+..+.+. |+..|..+++.+.. .+++++.||++++|+-..++.+... .+.+|.+-|.+ +
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~-----------------~~~~~~g~i~~~i 64 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETH-----------------AFEGPKGFIANSI 64 (745)
T ss_pred ceeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccce-----------------ecccCcceeeccc
Confidence 34556666 99999999988876 3678999999999998877665432 24667777777 7
Q ss_pred EEcC-CCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEe
Q 002494 415 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (915)
Q Consensus 415 ~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 493 (915)
++-+ ++-.+++|+.|++|.+|...+...+. .+.+|...|++++...++. +++||.|.++++|- .+++...+
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l 136 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSL 136 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhccc
Confidence 8876 55569999999999999999876665 7889999999999877765 89999999999995 56677789
Q ss_pred cCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEE
Q 002494 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (915)
Q Consensus 494 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd 573 (915)
.+|...|+++..-|.. .++||+.|.+|++|.- ++....+.+|...|..+++-+++. +++|+ +|+.|++|+
T Consensus 137 ~gH~asVWAv~~l~e~---~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScs----NDg~Ir~w~ 206 (745)
T KOG0301|consen 137 QGHTASVWAVASLPEN---TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCS----NDGSIRLWD 206 (745)
T ss_pred CCcchheeeeeecCCC---cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeec----CCceEEEEe
Confidence 9999999999988763 7999999999999964 567778889999999999988865 55665 488999999
Q ss_pred CCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCC
Q 002494 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (915)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 653 (915)
+ +|+++..+.+|.. .+++++..+++..++++++|++++||+.. ++.+.+...+. .|+++.+-++|. |++|+.|
T Consensus 207 ~-~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SD 279 (745)
T KOG0301|consen 207 L-DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSD 279 (745)
T ss_pred c-cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccC
Confidence 9 6999999999998 89999988888999999999999999987 67777766654 788898888887 5678889
Q ss_pred CcEEEEEcCCC
Q 002494 654 NGIKILANSDG 664 (915)
Q Consensus 654 g~i~iwd~~~~ 664 (915)
|.|+||.....
T Consensus 280 G~VrVfT~~k~ 290 (745)
T KOG0301|consen 280 GRVRVFTVDKD 290 (745)
T ss_pred ceEEEEEeccc
Confidence 99999987643
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-26 Score=227.65 Aligned_cols=293 Identities=14% Similarity=0.206 Sum_probs=237.9
Q ss_pred cEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEc
Q 002494 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (915)
Q Consensus 338 ~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 417 (915)
+.+.+|.|.+-|.++.+|...++ ++||+ .|.|+|||+....... +....-.....+-|.++...
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trh-VyTgG-kgcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcce-eEecC-CCeEEEeeccCCCCCC--------------ccccccccCcccceeeeEec
Confidence 45778889999999999999985 78876 6899999997642111 00011123356789999999
Q ss_pred CCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCC
Q 002494 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (915)
Q Consensus 418 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 497 (915)
|||+.|++|+.-.++.|||+....... ...+....-...+++.+||.+ +.+++..||.|.|||+.+...+..|.+|.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTpri-kaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRI-KAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcch-hhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 999999999999999999998754321 113333344678899999999 88899999999999999999999999999
Q ss_pred CCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCC
Q 002494 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (915)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~ 577 (915)
+.+.||.+++ +|..|.+|+-|++||.||++.+..+.... ....|.++.++|++.+++++-. ++.+.+-... +
T Consensus 552 DGascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-k 623 (705)
T KOG0639|consen 552 DGASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-K 623 (705)
T ss_pred CCceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecC-C
Confidence 9999999976 45899999999999999999887766544 3457999999999999999875 5557666654 4
Q ss_pred eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 002494 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (915)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~ 657 (915)
...+.+..|.. .|.++.|.+.|+++++.+.|+.+..|....|..+...+... .|.++.+|.|.++|++|+.|..-.
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~S---sVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS---SVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeeccccC---cceeeeeccCceEEEecCCCcceE
Confidence 44456666776 89999999999999999999999999999888776665433 799999999999999999999888
Q ss_pred EEEc
Q 002494 658 ILAN 661 (915)
Q Consensus 658 iwd~ 661 (915)
||.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8865
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=216.33 Aligned_cols=241 Identities=17% Similarity=0.260 Sum_probs=213.3
Q ss_pred ccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC
Q 002494 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (915)
Q Consensus 408 ~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~ 487 (915)
...+.++...|....+++|+.|..+.++|...++.+. .+.||...|+.+.|+|+.. .+++++.|..|+||.....
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLS 293 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeeccccc
Confidence 3467888888887899999999999999999877665 7889999999999999998 7999999999999999888
Q ss_pred eeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecC--CCCcEEEEEECCCCCEEEEEeecCCC
Q 002494 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEG 565 (915)
Q Consensus 488 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~sp~g~~l~~~~~~~~~ 565 (915)
........|..+|+.+..+|.+ .||++++.||+..+.|++++........ ..-.+++.+|+|||..+.++..
T Consensus 294 s~~~~~~~h~~~V~~ls~h~tg--eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~---- 367 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHPTG--EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP---- 367 (506)
T ss_pred cCccccccccccceeeeeccCC--cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----
Confidence 8888888999999999999865 7999999999999999999888776554 3347899999999998888874
Q ss_pred CceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCC
Q 002494 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (915)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 645 (915)
|+.+++||+.++..+..|.+|.+ +|..++|+.+|-+|+++++|+.|++||++..+...++...... .+.++.|.+.|.
T Consensus 368 d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt 445 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGT 445 (506)
T ss_pred CceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCC
Confidence 88899999999999999999998 9999999999999999999999999999999888888776544 799999999999
Q ss_pred EEEEEeCCCcEEEEEc
Q 002494 646 LLAVTTSDNGIKILAN 661 (915)
Q Consensus 646 ~l~s~~~dg~i~iwd~ 661 (915)
+++.++.|=.|++++-
T Consensus 446 ~L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 446 YLGIAGSDLQVYICKK 461 (506)
T ss_pred eEEeecceeEEEEEec
Confidence 9999987766666553
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-25 Score=221.71 Aligned_cols=249 Identities=18% Similarity=0.263 Sum_probs=208.1
Q ss_pred cccEEEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEE
Q 002494 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (915)
Q Consensus 336 ~~~~~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 414 (915)
+....+++. ....|+++.|-.||+ +||+|...|.|+|+|..+...++. +..|+.+|..+
T Consensus 57 ~~~~~k~~srFk~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r~iLR~-------------------~~ah~apv~~~ 116 (487)
T KOG0310|consen 57 TRSVRKTFSRFKDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKSRVILRQ-------------------LYAHQAPVHVT 116 (487)
T ss_pred hhhhhhhHHhhccceeEEEeecCCe-EEEccCCcCcEEEeccccHHHHHH-------------------HhhccCceeEE
Confidence 444455555 688999999999997 899999999999999766444432 67899999999
Q ss_pred EEcCC-CCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC-eeEEE
Q 002494 415 VWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYT 492 (915)
Q Consensus 415 ~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~ 492 (915)
.|+|+ ++.|++|+.|+.+++||+.+... ...+.+|++.|.|.+|+|...+ +++|||.||.|++||++.. ..+.+
T Consensus 117 ~f~~~d~t~l~s~sDd~v~k~~d~s~a~v---~~~l~~htDYVR~g~~~~~~~h-ivvtGsYDg~vrl~DtR~~~~~v~e 192 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSDDKVVKYWDLSTAYV---QAELSGHTDYVRCGDISPANDH-IVVTGSYDGKVRLWDTRSLTSRVVE 192 (487)
T ss_pred EecccCCeEEEecCCCceEEEEEcCCcEE---EEEecCCcceeEeeccccCCCe-EEEecCCCceEEEEEeccCCceeEE
Confidence 99995 55778889999999999998653 3378899999999999999887 8999999999999999976 66667
Q ss_pred ecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeE-ecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEE
Q 002494 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (915)
Q Consensus 493 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~ 571 (915)
+. |..+|.++.+-|.+ ..|++++ ...+++||+.++..... ...|...|+|+.+..++..|++++- |+.+++
T Consensus 193 ln-hg~pVe~vl~lpsg--s~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL----D~~VKV 264 (487)
T KOG0310|consen 193 LN-HGCPVESVLALPSG--SLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL----DRHVKV 264 (487)
T ss_pred ec-CCCceeeEEEcCCC--CEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccc----ccceEE
Confidence 74 99999999998854 5777765 45899999997766554 4448889999999999999999986 777999
Q ss_pred EECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 002494 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (915)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 618 (915)
||..+.+.+..+.-.. +|.+++.+|++..++.|..||.+.+-+..
T Consensus 265 fd~t~~Kvv~s~~~~~--pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 265 FDTTNYKVVHSWKYPG--PVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred EEccceEEEEeeeccc--ceeeEEecCCCceEEEecccceeeeehhh
Confidence 9998888888876543 89999999999999999999988776443
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=240.45 Aligned_cols=289 Identities=14% Similarity=0.201 Sum_probs=212.9
Q ss_pred CCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeE--------EeecccCCeeEEEEec---CCCeEEEEEEe
Q 002494 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL--------EIDAHVGGVNDIAFAH---PNKQLCIVTCG 474 (915)
Q Consensus 406 ~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~--------~~~~h~~~v~~~~~s~---~~~~~~l~s~~ 474 (915)
.|.+.|+++.||+||+|||+||.|+.|+||.+.......... .+.+ .+.+..+.-++ .+.....-.+.
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~-~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNA-NSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhh-ccccCcccccccccccccccccccc
Confidence 799999999999999999999999999999987633211000 0000 00011111111 01100111222
Q ss_pred CCCcEEEEEcC----CCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEEC
Q 002494 475 DDKMIKVWDVV----AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYS 550 (915)
Q Consensus 475 ~d~~i~vwd~~----~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 550 (915)
....+ +.+.. ..++++.+.+|.+.|.++.|+.+ ++|++++.|.+||+|++....++..+. |...|+|++|+
T Consensus 344 ~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 344 QSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred CCccc-cCCCccccccccchhhhhccchhheecccccC---CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence 22222 22211 24677889999999999999865 599999999999999999888888776 88899999999
Q ss_pred C-CCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCC
Q 002494 551 A-DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (915)
Q Consensus 551 p-~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 629 (915)
| |.+++++|+- |+.+++|++...+.+.-...+. .|++++|.|+|+..++|+.+|.+++|+....+.......+
T Consensus 419 PvDDryFiSGSL----D~KvRiWsI~d~~Vv~W~Dl~~--lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 419 PVDDRYFISGSL----DGKVRLWSISDKKVVDWNDLRD--LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred ccCCCcEeeccc----ccceEEeecCcCeeEeehhhhh--hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 9 7789999986 7889999999887776655553 8999999999999999999999999999988777665432
Q ss_pred CC------CCCcceEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCcc
Q 002494 630 GG------LPASPRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (915)
Q Consensus 630 ~~------~~~v~~v~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 702 (915)
.+ ...|+++.|.| +...+++.+.|..|+|+|..+. .++..++|+...-..
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~SQ---------------------- 549 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSSQ---------------------- 549 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcccccCCcc----------------------
Confidence 11 12699999998 4456788889999999999776 777788776542111
Q ss_pred ccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCC-CceeEeecCC
Q 002494 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPD 754 (915)
Q Consensus 703 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~~~ 754 (915)
....|+.||++|+++++ ..|.||++..
T Consensus 550 -------------------------~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 550 -------------------------ISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred -------------------------eeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 12367889999999998 8999999854
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=231.60 Aligned_cols=242 Identities=19% Similarity=0.237 Sum_probs=206.5
Q ss_pred EEEEc-CCCCEEEEEECCCeEEEEEecCCCce---eeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC-
Q 002494 413 RCVWG-PDGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG- 487 (915)
Q Consensus 413 ~~~~s-pd~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~- 487 (915)
.+..+ |.+++|.+||.||.|++|+....... .....++.|...|++++...+++ .|+++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 34444 35678999999999999998654321 12335778999999999999998 6999999999999998876
Q ss_pred -eeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCc--ee--------Eec-CCCCcEEEEEECCCCCE
Q 002494 488 -RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RV--------DYD-APGNWCTMMAYSADGTR 555 (915)
Q Consensus 488 -~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~--------~~~-~~~~~i~~~~~sp~g~~ 555 (915)
-+..++..|.+.|.|+++-.. +...+++|+.|+.|.+||++++.. .. ... ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 577888899999999998322 347999999999999999997633 11 122 56668999999999988
Q ss_pred EEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCc
Q 002494 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (915)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (915)
+++|+. ++.+++||.++++.+..+.||.. .|.++..++||+.+++++.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 888875 55599999999999999999999 899999999999999999999999999999999999998877 79
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 636 ~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999999998875
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=240.34 Aligned_cols=229 Identities=14% Similarity=0.233 Sum_probs=191.3
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEE--CCCeEEEEEecCCC---------ceeeeEEeecccCCeeEEEEecCCCeEEEEE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAF--SKHIVHLYTYNPTG---------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~--~dg~i~vwd~~~~~---------~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s 472 (915)
+..++..|.++..+|||..+|+|+ .|+.+.||+.+.-- ..+.......|.+.|+|+.|+|||. +||+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~--~lAs 86 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS--YLAS 86 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC--eEee
Confidence 344667799999999999999999 89999999865311 1122234567999999999999999 8999
Q ss_pred EeCCCcEEEEEcCC-------C-----------eeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCce
Q 002494 473 CGDDKMIKVWDVVA-------G-----------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534 (915)
Q Consensus 473 ~~~d~~i~vwd~~~-------~-----------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 534 (915)
|+.|+.|.||+... | +++..+.+|+..|..++|+|+ +.++++++.|++|.+||..+.+..
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~--~~~lvS~s~DnsViiwn~~tF~~~ 164 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD--DSLLVSVSLDNSVIIWNAKTFELL 164 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC--ccEEEEecccceEEEEccccceee
Confidence 99999999999762 1 357788899999999999994 489999999999999999999888
Q ss_pred eEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCC-----CceEEEEEcCCCCEEEEEe--
Q 002494 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK-----RSLGVVQFDTTRNRFLAAG-- 607 (915)
Q Consensus 535 ~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~l~s~~-- 607 (915)
..+.+|...|..+.|.|-|+++++-+. |++|++|+..+....+.+..+.. ..+..+.|||||.+|++..
T Consensus 165 ~vl~~H~s~VKGvs~DP~Gky~ASqsd----Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 165 KVLRGHQSLVKGVSWDPIGKYFASQSD----DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred eeeecccccccceEECCccCeeeeecC----CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 899999999999999999999999874 88899999887777776665433 2567899999999999853
Q ss_pred --CCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcC
Q 002494 608 --DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (915)
Q Consensus 608 --~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 642 (915)
.-.++.|.+..+.+.-..+-+|.. ++.++.|+|
T Consensus 241 n~~~~~~~IieR~tWk~~~~LvGH~~--p~evvrFnP 275 (942)
T KOG0973|consen 241 NGGKSTIAIIERGTWKVDKDLVGHSA--PVEVVRFNP 275 (942)
T ss_pred cCCcceeEEEecCCceeeeeeecCCC--ceEEEEeCh
Confidence 234688998888777778888876 899999998
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=206.18 Aligned_cols=285 Identities=19% Similarity=0.260 Sum_probs=209.1
Q ss_pred ccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCc-----eeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCC
Q 002494 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (915)
Q Consensus 403 ~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~ 477 (915)
.+++|.+.|++++|+.||++||+++.|+.|++|+++.-.. ++.... -+..+.+.|+||.+. +++++-...
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s-~vv~~~~g~ 155 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKS-VVVSVKRGN 155 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcce-EEEEEccCC
Confidence 3788999999999999999999999999999999876321 221111 224678899999987 677777778
Q ss_pred cEEEEEcCC---CeeEEE--------e-cCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEE
Q 002494 478 MIKVWDVVA---GRKQYT--------F-EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCT 545 (915)
Q Consensus 478 ~i~vwd~~~---~~~~~~--------~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 545 (915)
++++|.+.. |..... | +.|...+.++-. .+++.+|++++.|..|.+|+++ ++.+..+......-+
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY 232 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeecccccccc
Confidence 899997653 221111 1 235555555544 3466899999999999999998 666666666666677
Q ss_pred EEEECCCCCEEEEEeecCCCCceEEEEECC---CC-----eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 002494 546 MMAYSADGTRLFSCGTSKEGESHLVEWNES---EG-----AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (915)
Q Consensus 546 ~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~---~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 617 (915)
..+.||+|+++++++...| +++|.+- .| ..+..++||.. .|..++|+++...+++.+.||+++|||.
T Consensus 233 ~aavSP~GRFia~~gFTpD----VkVwE~~f~kdG~fqev~rvf~LkGH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPD----VKVWEPIFTKDGTFQEVKRVFSLKGHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ceeeCCCCcEEEEecCCCC----ceEEEEEeccCcchhhhhhhheeccchh-heeeeeeCCCcceeEEEecCCcEEEeec
Confidence 8899999999999998555 9999863 23 23567889988 8999999999999999999999999998
Q ss_pred CC----C---ceEEEEc--CCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeecc-CCCCcccccCCCCCC
Q 002494 618 DN----M---NMLTTVD--ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE-GRAMDKNRCPSEPIS 687 (915)
Q Consensus 618 ~~----~---~~~~~~~--~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 687 (915)
+- + +.++... .+.....-..++.+|+|+.||.+.. ..++++..++|+ ....++ -|...+.
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~-~~~~~e~~h~~~Is-------- 377 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGK-DYPELEDIHSTTIS-------- 377 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCc-cchhHHHhhcCcee--------
Confidence 52 1 2222221 1211112348999999999987754 679999999883 332222 2332222
Q ss_pred CCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCCCceeEee
Q 002494 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWR 751 (915)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~~~v~iw~ 751 (915)
++.+++||+++|++++..+++..
T Consensus 378 -----------------------------------------~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 378 -----------------------------------------SISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred -----------------------------------------eEEecCCCcEEeeecceeeeeec
Confidence 34788999999999999998886
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-25 Score=203.83 Aligned_cols=252 Identities=20% Similarity=0.273 Sum_probs=207.0
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEec--CCCeEEEEEEeCCCcEEE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKV 481 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~~~l~s~~~d~~i~v 481 (915)
-..|...|..+...-.|++|||++.|++|+|+..+++........+.+|.++|+.++|.. .|. +|++++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence 356899999999999999999999999999999998876666678999999999999986 677 8999999999999
Q ss_pred EEcCCCee--EEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCc---eeEecCCCCcEEEEEECCC---C
Q 002494 482 WDVVAGRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD---G 553 (915)
Q Consensus 482 wd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~sp~---g 553 (915)
|.-.+|+- ...+..|...|++++|.|..-|-.|++++.||.|.+.+++..+. ......|.-.|++++|.|. |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 99777743 34566799999999999999999999999999999999887622 2344567778999999986 5
Q ss_pred -----------CEEEEEeecCCCCceEEEEECCCCe--eEEEecCCCCCceEEEEEcCCC----CEEEEEeCCCcEEEEe
Q 002494 554 -----------TRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQIKFWD 616 (915)
Q Consensus 554 -----------~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~sp~~----~~l~s~~~dg~i~iwd 616 (915)
+.|++++. |+.|++|+..+++ ...++.+|.+ .|+.++|.|.- .++++++.||++.||.
T Consensus 165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 56888875 7789999998764 3345889998 99999999964 4799999999999998
Q ss_pred CCCCceEEEE-cCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 002494 617 MDNMNMLTTV-DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 617 ~~~~~~~~~~-~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 662 (915)
.+........ ..+.-...+..++||..|+.|++++.|+.|.+|.-.
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 7632111111 111122378999999999999999999999999754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=232.25 Aligned_cols=229 Identities=14% Similarity=0.208 Sum_probs=180.7
Q ss_pred EECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCe--------eEEEecCCC
Q 002494 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--------KQYTFEGHE 497 (915)
Q Consensus 426 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~--------~~~~~~~~~ 497 (915)
|+.++.|++|+...... ...+.+|.+.|.+++|+|+... +|++|+.|++|++||+.++. ++..+.+|.
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~-lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSE-ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence 55678899999776433 3367899999999999997433 79999999999999997642 344678899
Q ss_pred CCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCC
Q 002494 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (915)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~ 577 (915)
..|.+++|+|... .++++++.|++|++||+++......+. +...|.+++|+|+|++|++++. ++.|++||++++
T Consensus 126 ~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rsg 199 (568)
T PTZ00420 126 KKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRKQ 199 (568)
T ss_pred CcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCCC
Confidence 9999999999743 456799999999999999887666654 4568999999999999988774 778999999999
Q ss_pred eeEEEecCCCCCc----eEEEEEcCCCCEEEEEeCCC----cEEEEeCCC-CceEEEEcCCCCCCCcceEEEcCCCCEEE
Q 002494 578 AIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEF----QIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (915)
Q Consensus 578 ~~~~~~~~~~~~~----v~~~~~sp~~~~l~s~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 648 (915)
+.+.++.+|.+.. +....|++++.++++++.|+ .|+|||+++ ++++..+..+.....+......++|.+++
T Consensus 200 ~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~l 279 (568)
T PTZ00420 200 EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYL 279 (568)
T ss_pred cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEE
Confidence 9999999988621 22234568999999988664 799999995 56776665554433333333345689999
Q ss_pred EEeCCCcEEEEEcCCC
Q 002494 649 VTTSDNGIKILANSDG 664 (915)
Q Consensus 649 s~~~dg~i~iwd~~~~ 664 (915)
+|+.|++|++|++..+
T Consensus 280 sGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 280 IGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEECCCeEEEEEccCC
Confidence 9999999999999876
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=207.11 Aligned_cols=296 Identities=16% Similarity=0.210 Sum_probs=241.3
Q ss_pred ccEEEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEE
Q 002494 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (915)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 415 (915)
.++++.+. |.+.|+.++-....+ ++.+++.|.+-+||.+++|.++.. +.+|.+.|+++.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 34555665 999999999987776 899999999999999999999875 688999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEEec------C------------------------------CCce-eeeEEeecccCCeeE
Q 002494 416 WGPDGLMLGVAFSKHIVHLYTYN------P------------------------------TGEL-RQHLEIDAHVGGVND 458 (915)
Q Consensus 416 ~spd~~~l~s~~~dg~i~vwd~~------~------------------------------~~~~-~~~~~~~~h~~~v~~ 458 (915)
|++.+.++++++.|++..||... . +..+ .....+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 99999999999999999999621 1 0001 123357789999999
Q ss_pred EEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCC-CceeEe
Q 002494 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDY 537 (915)
Q Consensus 459 ~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~ 537 (915)
+.|...|+ -+++++.|.+..+||+++|..+..+.+|....+-++-+|.. +++++++.|.+.++||++.. ..+..+
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeee
Confidence 99999898 59999999999999999999999999999999999988865 78999999999999999843 334578
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCe-eEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 002494 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (915)
Q Consensus 538 ~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 616 (915)
.+|...|+++.|..+.+ +++++. |.+|++||+++.+ ++.++.... +++.++.+..+..++.--++..|++||
T Consensus 354 QGHtdtVTS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccccceeEEEEecCCc-eeecCC----CceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEe
Confidence 89999999999987764 566653 8889999998754 456665543 788899998888888888889999999
Q ss_pred CCCCceEEEEc---CCCCCCCcceEEEcCCC--CEEEEEeCCCcEEEEEcCCC
Q 002494 617 MDNMNMLTTVD---ADGGLPASPRLRFNKEG--SLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 617 ~~~~~~~~~~~---~~~~~~~v~~v~~s~~~--~~l~s~~~dg~i~iwd~~~~ 664 (915)
++.. .+..++ -.++...|++++|..+. .-|++|+.|..+.=|++...
T Consensus 427 lnG~-RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 427 LNGN-RLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCC-ccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9754 344333 22344479999998643 35789999999999998754
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-24 Score=202.01 Aligned_cols=244 Identities=18% Similarity=0.240 Sum_probs=204.3
Q ss_pred ccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEE
Q 002494 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (915)
Q Consensus 403 ~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vw 482 (915)
.+..|.++|++++.+ +.++|+|+.|-+|+|||+....++. .+-.|.+.|+++.|.++-....|++|+.||.|.+|
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 367899999999984 8999999999999999999876655 56679999999999988753359999999999999
Q ss_pred EcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeec
Q 002494 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (915)
Q Consensus 483 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~ 562 (915)
+...-.++.++++|.+.|+.++++|++ ++.++.+.|+.+++||+-.++.-....... ..+.+.|+|.|.+++.++
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~-- 187 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSG-- 187 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEe--
Confidence 999999999999999999999999965 788999999999999998776655444322 334599999999888876
Q ss_pred CCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEE--
Q 002494 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF-- 640 (915)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-- 640 (915)
...|-+|.+.+......+.... .+.++.|. ++..+++|++|+.|.+||..+..+...+..|.. .|-++.+
T Consensus 188 ---~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~ 259 (362)
T KOG0294|consen 188 ---RNKIDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYT 259 (362)
T ss_pred ---ccEEEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEe
Confidence 4558899988776655554432 46677765 567899999999999999999999999988876 7888774
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 641 NKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 641 s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
+|++.+|++++.||.|+|||+...
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 467899999999999999999865
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=217.55 Aligned_cols=265 Identities=15% Similarity=0.261 Sum_probs=214.6
Q ss_pred EEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC
Q 002494 339 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (915)
Q Consensus 339 ~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 418 (915)
....+.|.+.|+.+..-|....++|+++..+.|.|||..+-.-..... +...+...+.+|...-++++|++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~---------~~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS---------GECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc---------ccCCCceEEEeeccccccccccc
Confidence 345566999999999999999999999999999999987643322100 00112223678888888899999
Q ss_pred CC-CEEEEEECCCeEEEEEecCCCc----eeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcC--CCeeEE
Q 002494 419 DG-LMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV--AGRKQY 491 (915)
Q Consensus 419 d~-~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~ 491 (915)
.. -.|++++.|++|++||+..... +.....+.+|...|.+++|++-... +|++++.|+.+.|||++ +.++..
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcc
Confidence 54 4889999999999999986543 4455578899999999999998877 89999999999999999 566677
Q ss_pred EecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCc-eeEecCCCCcEEEEEECCCCCEEE-EEeecCCCCceE
Q 002494 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEGESHL 569 (915)
Q Consensus 492 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~-~~~~~~~~~~~i 569 (915)
...+|...|+|++|+|.+ +..|++|+.|++|.+||+++... +..+..|...|.++.|||....++ +++ .|+.+
T Consensus 267 ~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg----~D~rl 341 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG----TDRRL 341 (422)
T ss_pred cccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc----cCCcE
Confidence 788999999999999985 57999999999999999998654 557888999999999999876655 444 38889
Q ss_pred EEEECCCC--------------eeEEEecCCCCCceEEEEEcCCCCEEE-EEeCCCcEEEEeCCC
Q 002494 570 VEWNESEG--------------AIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDN 619 (915)
Q Consensus 570 ~~wd~~~~--------------~~~~~~~~~~~~~v~~~~~sp~~~~l~-s~~~dg~i~iwd~~~ 619 (915)
.+||+..- +++....||.. .|..+.|+|+..+++ ++++|+.+.||++..
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99998631 23456667887 899999999988655 578999999999873
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=213.91 Aligned_cols=252 Identities=19% Similarity=0.250 Sum_probs=214.4
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeE--------------Ee-ecccCCeeEEEEecCCCeE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL--------------EI-DAHVGGVNDIAFAHPNKQL 468 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~--------------~~-~~h~~~v~~~~~s~~~~~~ 468 (915)
+..|.-+|.|++++||+++..+++.+++|.=|++.++...+... .- .+|...+.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 46699999999999999999999999999999998876431110 01 27888999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEE
Q 002494 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (915)
Q Consensus 469 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 548 (915)
||++|+.|..|.||+..+.+.++.+.+|.+.|.+++|-... ..+++++.|+.+++|+++....+..+.+|...|.++.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 89999999999999999999999999999999999997654 5799999999999999998888888899999999999
Q ss_pred ECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcC
Q 002494 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (915)
Q Consensus 549 ~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 628 (915)
...-++.+-+++. |.++++|++.. +....|.++.+ .+.|++|-. ...|++|+++|.|.+|++.+.+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 8888877767664 78899999953 34455777776 899999974 56899999999999999999988877653
Q ss_pred CCC----------CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q 002494 629 DGG----------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVR 666 (915)
Q Consensus 629 ~~~----------~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 666 (915)
..+ ...|++++..|...++|+|+.+|.|++|.+.+|.+
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 211 11678999999999999999999999999998843
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=202.89 Aligned_cols=278 Identities=17% Similarity=0.179 Sum_probs=216.1
Q ss_pred CCCccCeEEEEEcC-CCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEE
Q 002494 405 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 405 ~~~~~~v~~~~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd 483 (915)
...+..|.+++||| ...++++++.||+|++|+++....... .....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 44678899999999 555667899999999999987433222 24457899999999999998 689999999999999
Q ss_pred cCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecC
Q 002494 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (915)
Q Consensus 484 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~ 563 (915)
+.+++ +..+..|..+|..+.|-+......|++||.|.+|+.||++....+..+..++ .++++..- ...++++..
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv~--~pm~vVata-- 174 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADVL--YPMAVVATA-- 174 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhcc--CceeEEEec--
Confidence 99995 5567789999999999887666789999999999999999887777766543 34444432 234555553
Q ss_pred CCCceEEEEECCCCeeE-EEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce--EEEEcCCCC-------CC
Q 002494 564 EGESHLVEWNESEGAIK-RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGG-------LP 633 (915)
Q Consensus 564 ~~~~~i~~wd~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~-------~~ 633 (915)
+..|.+|+++++... +.....-...++|++..++....+.|+-+|.+.|..+..+.+ -.+++.|.. .-
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 666999999766432 223333334789999999988889999999999999987633 333443331 23
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccC
Q 002494 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 700 (915)
Q Consensus 634 ~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 700 (915)
.|++++|+|.-..|+++|.||++.+||-... ..++..+.|...|+.+.+. .+|.+++.+.
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s~~~~qpItcc~fn------~~G~ifaYA~ 312 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTSETHPQPITCCSFN------RNGSIFAYAL 312 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhh-hhhhccCcCCCccceeEec------CCCCEEEEEe
Confidence 5789999998889999999999999998766 5677778899999988877 5777777665
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=203.93 Aligned_cols=275 Identities=13% Similarity=0.208 Sum_probs=206.9
Q ss_pred EEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCcee----EecCCCCcEEEEEECCCCCEEEEEeecCCCC
Q 002494 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (915)
Q Consensus 491 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~ 566 (915)
..+++|...|++++|+. +|++|++++.|+.|++|+++...... .....-...+.+.|+||.+-+++.... .
T Consensus 80 ~~LKgH~~~vt~~~FsS--dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~---g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS--DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR---G 154 (420)
T ss_pred hhhhccCCceeeeEEcC--CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc---C
Confidence 35679999999999976 56899999999999999987643221 112223356889999999987766542 4
Q ss_pred ceEEEEECCC---CeeEEE--------ec-CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCC
Q 002494 567 SHLVEWNESE---GAIKRT--------YS-GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (915)
Q Consensus 567 ~~i~~wd~~~---~~~~~~--------~~-~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (915)
..+++|.+.. |..... |. .|.- .+..+-...++.++++++.|.+|.+|+++ |+.+..+..... .
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v-~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~ 230 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQV-DIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--S 230 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhccc-ceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--c
Confidence 4688887532 221111 11 1122 44455566678899999999999999999 888888876543 5
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCC
Q 002494 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (915)
Q Consensus 635 v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 714 (915)
-+..+.||+|++|++++-.--|++|.+--++ .+.+
T Consensus 231 n~~aavSP~GRFia~~gFTpDVkVwE~~f~k---------dG~f------------------------------------ 265 (420)
T KOG2096|consen 231 NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK---------DGTF------------------------------------ 265 (420)
T ss_pred ccceeeCCCCcEEEEecCCCCceEEEEEecc---------Ccch------------------------------------
Confidence 5778999999999999998889999753221 0000
Q ss_pred CCCCCcccccccCCCceeccCCceeeccCCCceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEeeccc
Q 002494 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 794 (915)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~s~dg~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg 794 (915)
....+.+.+.| |.+.|..++||+++..+++.+.||
T Consensus 266 -------------------------------------------qev~rvf~LkG--H~saV~~~aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 266 -------------------------------------------QEVKRVFSLKG--HQSAVLAAAFSNSSTRAVTVSKDG 300 (420)
T ss_pred -------------------------------------------hhhhhhheecc--chhheeeeeeCCCcceeEEEecCC
Confidence 00112224455 999999999999999999999999
Q ss_pred eeEEeeccccc---------------------------CCCCCCccccc---cceeecCCCCCceeccCCCCCCCCCcee
Q 002494 795 VHKLWKWQRTE---------------------------RNPSGKATANV---APQLWQPPSGTLMTNDINESKPTEESAA 844 (915)
Q Consensus 795 ~v~iW~l~~~~---------------------------~s~dg~~~~~~---~i~l~~~~~~~~~~~~~~~~~h~~~~I~ 844 (915)
+++|||.+..- ++|.|+.+|.. ++++|..++|+...+.-.- | .+.|+
T Consensus 301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~--h-~~~Is 377 (420)
T KOG2096|consen 301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDI--H-STTIS 377 (420)
T ss_pred cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHh--h-cCcee
Confidence 99999997521 58999988876 7999999998877652233 6 99999
Q ss_pred EEEEecCCCeEEEecCCeeEEee
Q 002494 845 CIALSKNDSYVMSASGGKVSLFN 867 (915)
Q Consensus 845 ~l~~S~dg~~L~s~sd~~v~vw~ 867 (915)
+++|++||++++|++|..+++.-
T Consensus 378 ~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 378 SISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred eEEecCCCcEEeeecceeeeeec
Confidence 99999999999999999999985
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-24 Score=202.65 Aligned_cols=331 Identities=13% Similarity=0.206 Sum_probs=243.3
Q ss_pred EeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEe
Q 002494 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (915)
Q Consensus 448 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd 527 (915)
.+.||...|+.++-....+ ++.+++.|.+.+||.+++|+|+.++.+|.+.|+++.|++.+ .++++++.|++..||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqp--i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~--~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQP--ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG--LLLLTASGDETAHIWK 218 (481)
T ss_pred hhcccccceeeehhhcCCc--ceeecccccceeEEeeccccceeeecccccceeeEEecccc--ceEEEccCCcchHHHH
Confidence 5779999999999876666 89999999999999999999999999999999999999855 7999999999999996
Q ss_pred cCCCCceeE---ecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEE
Q 002494 528 YDYLGSRVD---YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (915)
Q Consensus 528 ~~~~~~~~~---~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 604 (915)
..-.-..-. -..|.+. ....-+........++. +....+| ..++..+.+|.. .|.+..|-..|+.++
T Consensus 219 ~av~~~vP~~~a~~~hSsE-eE~e~sDe~~~d~d~~~-~sD~~ti-------RvPl~~ltgH~~-vV~a~dWL~gg~Q~v 288 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSE-EEEEHSDEHNRDTDSSE-KSDGHTI-------RVPLMRLTGHRA-VVSACDWLAGGQQMV 288 (481)
T ss_pred HhhcCcCCCCCCCCCCCch-hhhhccccccccccccc-ccCCcee-------eeeeeeeecccc-ceEehhhhcCcceee
Confidence 321100000 0001000 00000100011111110 0001123 235677889988 899999999999999
Q ss_pred EEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCC
Q 002494 605 AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSE 684 (915)
Q Consensus 605 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 684 (915)
+++.|.+..+||+++++++..+.+|.+ ..+.++-+|..+++++++.|.+.++||+......+..|+||.+.|+..
T Consensus 289 TaSWDRTAnlwDVEtge~v~~LtGHd~--ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~--- 363 (481)
T KOG0300|consen 289 TASWDRTANLWDVETGEVVNILTGHDS--ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSV--- 363 (481)
T ss_pred eeeccccceeeeeccCceeccccCcch--hccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEE---
Confidence 999999999999999999999999987 789999999999999999999999999997777788899999887754
Q ss_pred CCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCCCceeEeecCCCCCccceeEe
Q 002494 685 PISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKAL 764 (915)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~~~v~iw~~~~~~~~~~~~~~ 764 (915)
+|..|.+.+..++|.+|++||+.+...+ +..+
T Consensus 364 ----------------------------------------------vF~~dd~vVSgSDDrTvKvWdLrNMRsp--lATI 395 (481)
T KOG0300|consen 364 ----------------------------------------------VFNTDDRVVSGSDDRTVKVWDLRNMRSP--LATI 395 (481)
T ss_pred ----------------------------------------------EEecCCceeecCCCceEEEeeeccccCc--ceee
Confidence 3444444443334489999999863332 2222
Q ss_pred ecCCccCCCceEEEEEecCCceEEEeeccceeEEeecccccCCCCCCccccccceeecCCCCCceeccCCCCCCCCCcee
Q 002494 765 RLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA 844 (915)
Q Consensus 765 ~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~I~ 844 (915)
+ ..++++.++.|..++.++.--.+..|++||++.... + .+ .. -...+| ..-|+
T Consensus 396 R-----tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl-------a-------Rl------Pr-tsRqgH-rRMV~ 448 (481)
T KOG0300|consen 396 R-----TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL-------A-------RL------PR-TSRQGH-RRMVT 448 (481)
T ss_pred e-----cCCccceeEeecCCceEEeccCCceEEEEecCCCcc-------c-------cC------Cc-cccccc-ceeee
Confidence 3 456899999999888777777788999998876332 0 10 00 011227 99999
Q ss_pred EEEEecCCC--eEEEec-CCeeEEeeccCCC
Q 002494 845 CIALSKNDS--YVMSAS-GGKVSLFNMMTFK 872 (915)
Q Consensus 845 ~l~~S~dg~--~L~s~s-d~~v~vw~l~t~k 872 (915)
|.+|+.+-. -|++++ |..+.=|++.+.+
T Consensus 449 c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 449 CCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eeeccccCcccccccccccceeeeeEecccC
Confidence 999997754 488888 9999999998753
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-23 Score=195.68 Aligned_cols=269 Identities=17% Similarity=0.257 Sum_probs=215.9
Q ss_pred EEEEECCCeEEEEEecCCC---------ceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEe
Q 002494 423 LGVAFSKHIVHLYTYNPTG---------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (915)
Q Consensus 423 l~s~~~dg~i~vwd~~~~~---------~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 493 (915)
|++|+....|.=+++.-.. .+...+.+..|.+++++++.+ +. ++++||.|-+|+|||+.....+..+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcce
Confidence 5566666665555543221 123345677899999999994 66 8999999999999999999999999
Q ss_pred cCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEE
Q 002494 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (915)
Q Consensus 494 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd 573 (915)
..|.+.|+++.|.+......|++|+.||.|.+|+.........+..|.+.|+.++.+|.|+..++.+ +|..++.||
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg----~D~~lr~WN 155 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVG----GDQVLRTWN 155 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEc----CCceeeeeh
Confidence 8999999999998876556899999999999999999888889999999999999999999888877 488899999
Q ss_pred CCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCC
Q 002494 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (915)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 653 (915)
+-.|+.-....-.. ..+.+.|+|.|.+++.++.+ .|-||.+.+......+.... .+.++.|- ++..+++|++|
T Consensus 156 LV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~---r~l~~~~l-~~~~L~vG~d~ 228 (362)
T KOG0294|consen 156 LVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPK---RILCATFL-DGSELLVGGDN 228 (362)
T ss_pred hhcCccceeeccCC--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccc---cceeeeec-CCceEEEecCC
Confidence 99887765555433 34559999999999998877 59999999877776665442 34555554 57889999999
Q ss_pred CcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceec
Q 002494 654 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 733 (915)
Q Consensus 654 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s 733 (915)
+.|.+||..++ .+...+.+|...|..+.. .-.
T Consensus 229 ~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~-----------------------------------------------~~~ 260 (362)
T KOG0294|consen 229 EWISLKDTDSD-TPLTEFLAHENRVKDIAS-----------------------------------------------YTN 260 (362)
T ss_pred ceEEEeccCCC-ccceeeecchhheeeeEE-----------------------------------------------Eec
Confidence 99999999986 788889999987775421 123
Q ss_pred cCCceeeccCC-CceeEeecCC
Q 002494 734 VDVKPRVAEDV-DKIKSWRIPD 754 (915)
Q Consensus 734 ~dg~~la~~~~-~~v~iw~~~~ 754 (915)
|++.+|++++. |.|++||++.
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred CCceEEEEeccCceEEEEEccc
Confidence 56678888776 9999999885
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=210.30 Aligned_cols=253 Identities=17% Similarity=0.260 Sum_probs=202.6
Q ss_pred CCCccCeEEEEEcCCCC-EEEEEECCCeEEEEEecCCCce-------eeeEEeecccCCeeEEEEecCCCeEEEEEEeCC
Q 002494 405 NDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGEL-------RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (915)
Q Consensus 405 ~~~~~~v~~~~~spd~~-~l~s~~~dg~i~vwd~~~~~~~-------~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d 476 (915)
-.|.+.|+.+.+-|+.. .+|+.+..+.|.|||....... ..-..+.+|.+.-.+++|++.... .+++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCC
Confidence 35899999999999655 5666788899999998754322 222367899998889999998777 89999999
Q ss_pred CcEEEEEcCCCe-------eEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCC--CCceeEecCCCCcEEEE
Q 002494 477 KMIKVWDVVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY--LGSRVDYDAPGNWCTMM 547 (915)
Q Consensus 477 ~~i~vwd~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~i~~~ 547 (915)
+.|.+||+.... ....+.+|...|..++|++... .++.+++.|+.+.|||+++ .+.......|...+.|+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 999999987532 3456789999999999999854 7899999999999999994 45555677889999999
Q ss_pred EECCCCCEE-EEEeecCCCCceEEEEECCCC-eeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceE-
Q 002494 548 AYSADGTRL-FSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNML- 623 (915)
Q Consensus 548 ~~sp~g~~l-~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~- 623 (915)
+|+|-+.++ |+++. |++|.+||+++- +++.++.+|.. .|..+.|+|.. ..|++++.|+.+.+||+..-...
T Consensus 279 ~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 279 AFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 999966654 56553 788999999874 46788999998 89999999965 56778889999999999742211
Q ss_pred -----------EEEcCCCCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEcCCC
Q 002494 624 -----------TTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 624 -----------~~~~~~~~~~~v~~v~~s~~~-~~l~s~~~dg~i~iwd~~~~ 664 (915)
..|...+|...|+.+.|+|+. ..|++.+.|+.++||.....
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 224444556689999999954 56788899999999998743
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=206.96 Aligned_cols=288 Identities=12% Similarity=0.205 Sum_probs=232.5
Q ss_pred CCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCC-EEE
Q 002494 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLG 424 (915)
Q Consensus 346 ~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~l~ 424 (915)
.+.|++|.|+|..+ +|.+|+.||+++||.+.......-.+ +.-...+|.+++|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEE
Confidence 47899999999998 78889999999999997653221111 122456899999999999 889
Q ss_pred EEECCCeEEEEEecCCCceeeeEEeeccc-CCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEE
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 503 (915)
+++....++.||+.+.+..+ .....++. ..+.....+|+++ +|+..|..|.|.+....+++.+.+++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 99999999999999866533 22333443 4677888999999 89999999999999999999988886 67789999
Q ss_pred EeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCC-cEEEEEECCCCCEEEEEeecCCCCceEEEEECCC------
Q 002494 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE------ 576 (915)
Q Consensus 504 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~------ 576 (915)
+|+. +++.|++++.+|.|.+||++...+...+...++ .-++++.+++|.++|+|+. .|.|.|||..+
T Consensus 351 ~fsS--dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFSS--DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEec--CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 9984 558899999999999999999988777765443 4578888999999999984 77899999653
Q ss_pred CeeEEEecCCCCCceEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceEEEEcCC-CCCCCcceEEEcCCCCEEEEEeCC
Q 002494 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSD 653 (915)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~s~~~d 653 (915)
.+++..+..-.. .|++++|+|+++.|+.+| .+..+++-.+.+......++.. .....|+|++|||.+.++|.|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 455666555554 799999999999998877 4778999999987777766553 334578999999999999999999
Q ss_pred CcEEEEEcC
Q 002494 654 NGIKILANS 662 (915)
Q Consensus 654 g~i~iwd~~ 662 (915)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999864
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=194.39 Aligned_cols=296 Identities=12% Similarity=0.158 Sum_probs=220.7
Q ss_pred cccEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEE
Q 002494 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (915)
Q Consensus 336 ~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 415 (915)
+.+...++++.. -.|+.||+.|. +||+|+.||.|.|||+.+...- ..+.+|-.+|.+++
T Consensus 14 PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~ia-------------------r~lsaH~~pi~sl~ 72 (405)
T KOG1273|consen 14 PEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIA-------------------RMLSAHVRPITSLC 72 (405)
T ss_pred hHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchh-------------------hhhhccccceeEEE
Confidence 455666777766 89999999997 6899999999999999986532 23788999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecC
Q 002494 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (915)
Q Consensus 416 ~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 495 (915)
||+||+.|++++.|..|.+||+..|..+++. ....+|+.+.|+|...+ .+++.-.+..-.+-++..++...--..
T Consensus 73 WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n-~~va~~~~~sp~vi~~s~~~h~~Lp~d 147 (405)
T KOG1273|consen 73 WSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRN-KCVATIMEESPVVIDFSDPKHSVLPKD 147 (405)
T ss_pred ecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCC-eEEEEEecCCcEEEEecCCceeeccCC
Confidence 9999999999999999999999999876633 24679999999998776 344444444455666554321111111
Q ss_pred CCCCEEEE--EeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCC-CcEEEEEECCCCCEEEEEeecCCCCceEEEE
Q 002494 496 HEAPVYSV--CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (915)
Q Consensus 496 ~~~~v~~i--~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~w 572 (915)
..+..+.. +-..+..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|++++..+. |..|+.|
T Consensus 148 ~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvIR~y 223 (405)
T KOG1273|consen 148 DDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVIRTY 223 (405)
T ss_pred CccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceEEEE
Confidence 11111111 11124467899999999999999999988887766555 68899999999999998875 7889999
Q ss_pred ECCC-------Cee--EEEecCC-CCCceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEc
Q 002494 573 NESE-------GAI--KRTYSGF-RKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (915)
Q Consensus 573 d~~~-------~~~--~~~~~~~-~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 641 (915)
+++. ++. .++++.- ....-.+++|+.+|.++++++ .-..++||....|.+++.+.+..+. ....+.|+
T Consensus 224 e~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV~wh 302 (405)
T KOG1273|consen 224 EISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDVNWH 302 (405)
T ss_pred ehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heeecccc
Confidence 9762 111 1122111 011345688999999998877 3457999999999999999887643 56789999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCC
Q 002494 642 KEGSLLAVTTSDNGIKILANSD 663 (915)
Q Consensus 642 ~~~~~l~s~~~dg~i~iwd~~~ 663 (915)
|-...|++- ..|.+++|....
T Consensus 303 p~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 303 PVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cceeeeeec-cCCceEEEEeec
Confidence 988888887 679999998654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-23 Score=217.08 Aligned_cols=280 Identities=15% Similarity=0.225 Sum_probs=225.3
Q ss_pred ccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeE-EEEecCCCeEEEEEEeCCCcEEE
Q 002494 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVND-IAFAHPNKQLCIVTCGDDKMIKV 481 (915)
Q Consensus 403 ~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~~~l~s~~~d~~i~v 481 (915)
.+.+|...|..++..+. ..++++|.||++++|+-..++-+. ...+.+|.+.|.. +++.+..+. .+++|+.|.++.+
T Consensus 9 ~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~-~~~~~~~~g~i~~~i~y~e~~~~-~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLE-THAFEGPKGFIANSICYAESDKG-RLVVGGMDTTIIV 85 (745)
T ss_pred EeccCccchheeEecCC-eEEeecCCCCceeeeeccCccccc-ceecccCcceeeccceeccccCc-ceEeecccceEEE
Confidence 36789999998887654 488999999999999987654443 2356678777777 888763332 5999999999999
Q ss_pred EEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 002494 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (915)
Q Consensus 482 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~ 561 (915)
|...+..++..+.+|...|.+++... ++ .+++||.|.++++|-. ++....+.+|...|.++..-|++ .+++|+.
T Consensus 86 ~~~~~~~P~~~LkgH~snVC~ls~~~--~~-~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsa 159 (745)
T KOG0301|consen 86 FKLSQAEPLYTLKGHKSNVCSLSIGE--DG-TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSA 159 (745)
T ss_pred EecCCCCchhhhhccccceeeeecCC--cC-ceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccC
Confidence 99999999999999999998887643 33 4999999999999954 34555688999999999999998 5667764
Q ss_pred cCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEc
Q 002494 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (915)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 641 (915)
|.+|++|.- ++.+++|.+|.+ .|+.+++-+++ .|++++.||.|++|++ +|+.+..+.+|.. -|.+++..
T Consensus 160 ----DKtIklWk~--~~~l~tf~gHtD-~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn--~vYsis~~ 228 (745)
T KOG0301|consen 160 ----DKTIKLWKG--GTLLKTFSGHTD-CVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTN--FVYSISMA 228 (745)
T ss_pred ----cceeeeccC--Cchhhhhccchh-heeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccce--EEEEEEec
Confidence 778999985 788999999998 89999998764 5899999999999999 6888888887766 78999988
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcc
Q 002494 642 KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVS 721 (915)
Q Consensus 642 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 721 (915)
.++..+++++.|++++||+.. ++.+.+.-.. ..+|+
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~---e~~q~I~lPt----------------------------------tsiWs------- 264 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD---ECVQVITLPT----------------------------------TSIWS------- 264 (745)
T ss_pred CCCCeEEEecCCceEEEeecC---ceEEEEecCc----------------------------------cceEE-------
Confidence 889999999999999999976 5566654222 22332
Q ss_pred cccccCCCceeccCCceeeccCCCceeEeecCC
Q 002494 722 ISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPD 754 (915)
Q Consensus 722 ~~~~~~~~~~~s~dg~~la~~~~~~v~iw~~~~ 754 (915)
..+-++|..++.++||.||||....
T Consensus 265 --------a~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 265 --------AKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred --------EEEeeCCCEEEeccCceEEEEEecc
Confidence 2344677888888889999997663
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=177.85 Aligned_cols=289 Identities=15% Similarity=0.225 Sum_probs=227.4
Q ss_pred ccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcC------CCe---------eEEEecCCCCCEEEEEeecCCCccEEEE
Q 002494 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV------AGR---------KQYTFEGHEAPVYSVCPHHKESIQFIFS 516 (915)
Q Consensus 452 h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~------~~~---------~~~~~~~~~~~v~~i~~~~~~~~~~l~s 516 (915)
....|.+++|+|.|. +.+.|++.++++|.-.. .+. ..+.-+.|.+.|.|.+|+|.+ +++++
T Consensus 31 dsqairav~fhp~g~--lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g--eliat 106 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGG--LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG--ELIAT 106 (350)
T ss_pred chhheeeEEecCCCc--eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc--CeEEe
Confidence 466899999999999 88999999999986432 110 112234588999999999854 89999
Q ss_pred EeCCCeEEEEecCCCCc-----eeEecCCCCcEEEEEECC----CCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCC
Q 002494 517 TAIDGKIKAWLYDYLGS-----RVDYDAPGNWCTMMAYSA----DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (915)
Q Consensus 517 ~~~dg~i~iwd~~~~~~-----~~~~~~~~~~i~~~~~sp----~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (915)
|+.|.+|++..++...+ ...+..|.+.|..++|-. .|..|++++. +|..|++-|...|+..+.+.+|.
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga---gdc~iy~tdc~~g~~~~a~sght 183 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA---GDCKIYITDCGRGQGFHALSGHT 183 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC---CcceEEEeecCCCCcceeecCCc
Confidence 99999999987654433 346677899999999954 3456677664 68889999999999999999999
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCC--C---CCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 002494 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG--G---LPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 588 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~---~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 662 (915)
+ .|.++ ++-+|-++++|+.|.+|++||++-...+.++.... + ...|.+++..|.|++|++|-.|....+||+.
T Consensus 184 g-hilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 184 G-HILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR 261 (350)
T ss_pred c-cEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence 8 45444 34468899999999999999999888888775421 1 2468899999999999999999999999999
Q ss_pred CCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeecc
Q 002494 663 DGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAE 742 (915)
Q Consensus 663 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~ 742 (915)
.+ +.++.+..|...+..+ .|||...++.++
T Consensus 262 g~-r~iq~f~phsadir~v-------------------------------------------------rfsp~a~yllt~ 291 (350)
T KOG0641|consen 262 GG-RMIQRFHPHSADIRCV-------------------------------------------------RFSPGAHYLLTC 291 (350)
T ss_pred CC-ceeeeeCCCccceeEE-------------------------------------------------EeCCCceEEEEe
Confidence 88 8888988888765543 677888888888
Q ss_pred CC-CceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEeeccceeEEeecc
Q 002494 743 DV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (915)
Q Consensus 743 ~~-~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~ 802 (915)
+- .+|++-|+.... ..++....+.. |...+..+.|.|..-.+++.+.|.++.+|.++
T Consensus 292 syd~~ikltdlqgdl-a~el~~~vv~e--hkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 292 SYDMKIKLTDLQGDL-AHELPIMVVAE--HKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cccceEEEeecccch-hhcCceEEEEe--ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 77 799999887421 12222223333 89999999999988888999999999999764
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-22 Score=190.67 Aligned_cols=257 Identities=16% Similarity=0.128 Sum_probs=196.9
Q ss_pred CCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcC
Q 002494 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (915)
Q Consensus 406 ~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~ 485 (915)
.....|.++.|+|.+..|++++.||++++|++..... + ..-.|..++.+++|.++.. +++|+.||.|+.+|+.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l-~---~~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL-K---LKFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLN 83 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh-h---hheecCCceeeeeccCCce---EEEeccCceEEEEEec
Confidence 3577899999999999999999999999999988632 2 2235889999999988665 8999999999999998
Q ss_pred CCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCC
Q 002494 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (915)
Q Consensus 486 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~ 565 (915)
++... .+..|..+|.++...+.. ..+++|+.|++|++||.+.......+.. ...|.++.. .|+.|++++.
T Consensus 84 ~~~~~-~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~---- 153 (323)
T KOG1036|consen 84 TGNED-QIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTS---- 153 (323)
T ss_pred CCcce-eeccCCCceEEEEeeccC--CeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeec----
Confidence 88654 455699999999998754 5799999999999999987444444443 337777765 4667887764
Q ss_pred CceEEEEECCCCeeEEE-ecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ceEEEEcCCCC-------CC
Q 002494 566 ESHLVEWNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGG-------LP 633 (915)
Q Consensus 566 ~~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 633 (915)
+..+.+||+++.....+ ....-...++++++-|++.-+++++-||.|.+=.++.. +....++.|.. .-
T Consensus 154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 67799999997654332 22222337899999998888999999999988766654 33334443321 23
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccc
Q 002494 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (915)
Q Consensus 634 ~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 680 (915)
+|++++|+|--..+|||+.||.|.+||+.+. +.+..+.+....|..
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r-Krl~q~~~~~~SI~s 279 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNR-KRLKQLAKYETSISS 279 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcch-hhhhhccCCCCceEE
Confidence 6899999999899999999999999999988 555666555444443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=202.81 Aligned_cols=299 Identities=15% Similarity=0.220 Sum_probs=224.1
Q ss_pred EEEec-CCCCEEEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEc
Q 002494 340 VRTLN-QGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (915)
Q Consensus 340 ~~~l~-h~~~V~~v~fspd~~-~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 417 (915)
..... +.++|++++|+|... .++|+|...|+|-+||+.+.+..... ..++..|.++|.++.|+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~---------------v~~f~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDG---------------VYLFTPHSGPVSGLKFS 243 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCc---------------eEEeccCCccccceEec
Confidence 33444 788999999999876 78999999999999999754433221 12257799999999999
Q ss_pred C-CCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCee-EEEecC
Q 002494 418 P-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEG 495 (915)
Q Consensus 418 p-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~ 495 (915)
| +...+++.+.||+|++-|++++.. .....+......+..+.|+.+.. .++.+..=|...+||.+++.. ...+.-
T Consensus 244 P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 244 PANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred CCChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhh
Confidence 9 456889999999999999988532 22223333455678889988877 466777777999999998654 666777
Q ss_pred CCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCce----eEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEE
Q 002494 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (915)
Q Consensus 496 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~ 571 (915)
|...|.+++++|... .+++|++.|++.+|||++..... .....|...|.++.|||.|-.|++.+. |..|++
T Consensus 321 h~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv 395 (498)
T KOG4328|consen 321 HKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRV 395 (498)
T ss_pred hhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEE
Confidence 999999999999855 79999999999999999865432 334457789999999999888888775 777999
Q ss_pred EECC----CCeeEEEecCCCC---C--ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcc-eEEEc
Q 002494 572 WNES----EGAIKRTYSGFRK---R--SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP-RLRFN 641 (915)
Q Consensus 572 wd~~----~~~~~~~~~~~~~---~--~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s 641 (915)
||.. .-.+...+. |.. . ......|.|+.+++++|..-..|-|+|-..++.+..+...... .|. -..|+
T Consensus 396 ~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~H 473 (498)
T KOG4328|consen 396 FDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFH 473 (498)
T ss_pred eecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeec
Confidence 9973 222222222 211 1 2345689999999999998889999999999888887554332 333 35899
Q ss_pred CCCC-EEEEEeCCCcEEEEEcCC
Q 002494 642 KEGS-LLAVTTSDNGIKILANSD 663 (915)
Q Consensus 642 ~~~~-~l~s~~~dg~i~iwd~~~ 663 (915)
|-+. +++.++..|.|+||-.+.
T Consensus 474 P~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 474 PMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred ccccceeccCCccceEEEEecCC
Confidence 9877 444455678888886543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=202.41 Aligned_cols=290 Identities=12% Similarity=0.157 Sum_probs=224.7
Q ss_pred cCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCC--CeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCC
Q 002494 453 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (915)
Q Consensus 453 ~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~ 530 (915)
.+.|+++.|+|..+ ++++++.|+++++|.+.. ...++.+.-...+|.+.+|.|++. ..+++++....++.||+.+
T Consensus 213 ~~~I~sv~FHp~~p--lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~-~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP--LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH-SVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCc--eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc-eEEEecccceEEEEeeccc
Confidence 46899999999998 899999999999998753 345666666778999999999653 3899999999999999987
Q ss_pred CCceeEec--C-CCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe
Q 002494 531 LGSRVDYD--A-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (915)
Q Consensus 531 ~~~~~~~~--~-~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 607 (915)
.+....-. + ....+.....+|++++|+..+. .|.|.+....+++.+.+++-.. .|..++|+.+++.|++++
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~----~G~I~lLhakT~eli~s~KieG--~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN----NGHIHLLHAKTKELITSFKIEG--VVSDFTFSSDSKELLASG 363 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEccc----CceEEeehhhhhhhhheeeecc--EEeeEEEecCCcEEEEEc
Confidence 65443222 1 1235778889999999998884 7889999999999998887644 799999999999999999
Q ss_pred CCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCC
Q 002494 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (915)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 687 (915)
.+|.|++||++...+++.+...+.. .-++++.+++|.++|+|+..|.|.|||..+-. . .+.+.++..+
T Consensus 364 ~~GeV~v~nl~~~~~~~rf~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~---~--s~~PkPik~~------ 431 (514)
T KOG2055|consen 364 GTGEVYVWNLRQNSCLHRFVDDGSV-HGTSLCISLNGSYLATGSDSGIVNIYDGNSCF---A--STNPKPIKTV------ 431 (514)
T ss_pred CCceEEEEecCCcceEEEEeecCcc-ceeeeeecCCCceEEeccCcceEEEeccchhh---c--cCCCCchhhh------
Confidence 9999999999999999998766543 34678888999999999999999999976541 1 1111111111
Q ss_pred CCCCceeeecccCccccccCCcccCCCCCCCCcccccccC-CCceeccCCceeeccCC---CceeEeecCCCCCccceeE
Q 002494 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT-IDGSRLVDVKPRVAEDV---DKIKSWRIPDISDPSQIKA 763 (915)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~s~dg~~la~~~~---~~v~iw~~~~~~~~~~~~~ 763 (915)
...... ..+.|++|++.||.++. +.+|+-.+...+ ..
T Consensus 432 ----------------------------------dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T----VF- 472 (514)
T KOG2055|consen 432 ----------------------------------DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT----VF- 472 (514)
T ss_pred ----------------------------------hhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee----ee-
Confidence 001111 45689999999999988 788998887411 11
Q ss_pred eecCC-ccCCCceEEEEEecCCceEEEeeccceeEEeecc
Q 002494 764 LRLPD-SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (915)
Q Consensus 764 ~~~~~-~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~ 802 (915)
-.+|- +..-+.|+||+|||.|-+|+.|..+|.|.+|.+.
T Consensus 473 sNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 473 SNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 11221 2245679999999999999999999999999864
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-22 Score=187.53 Aligned_cols=300 Identities=16% Similarity=0.220 Sum_probs=225.8
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC-CCCEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-d~~~l 423 (915)
|.+.|+++...+...+++++|+.||.|.+||++.-.......+. -+ ..+. ....--.+|.-.|.++.|-| |...+
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li-~k-~~c~--v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI-AK-HKCI--VAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce-eh-eeee--ccccCCccceeeeeeeEEeeecCcee
Confidence 88999999999865557899999999999999875421110000 00 0000 01111356889999999999 66788
Q ss_pred EEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCC-eEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEE
Q 002494 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK-QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (915)
Q Consensus 424 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 502 (915)
.+++.|.+++|||.++-+... .+ ...+.|.+-++||-.. +-++++|..|-.|++.|+.+|...+++.+|.+.|.+
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred ecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence 899999999999999865543 22 3466788888888543 336788888999999999999999999999999999
Q ss_pred EEeecCCCccEEEEEeCCCeEEEEecCCC-CceeEe--------------cCCCCcEEEEEECCCCCEEEEEeecCCCCc
Q 002494 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDY--------------DAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (915)
Q Consensus 503 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~--------------~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~ 567 (915)
+.|+|..+ -.|++|+.||.|++||++.. ++...+ ..|.+.+..++|+.+|.++++++. +.
T Consensus 194 V~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d~ 268 (397)
T KOG4283|consen 194 VEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----DD 268 (397)
T ss_pred EEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----cc
Confidence 99999864 57899999999999999765 332222 245568999999999999999986 67
Q ss_pred eEEEEECCCCeeEEEecC---CCCC---ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEc
Q 002494 568 HLVEWNESEGAIKRTYSG---FRKR---SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (915)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~---~~~~---~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 641 (915)
.+++|+...|+....-.+ |... .+. +. +.+...++.--.++.+.++++-.+..+..+..|.. .+.+..+.
T Consensus 269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k--~i~c~~~~ 344 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLK--RINCAAYR 344 (397)
T ss_pred ceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccc--eeeEEeec
Confidence 799999988764222111 1110 111 22 33444455455668999999999999999998854 88999999
Q ss_pred CCCCEEEEEeCCCcEEEEEc
Q 002494 642 KEGSLLAVTTSDNGIKILAN 661 (915)
Q Consensus 642 ~~~~~l~s~~~dg~i~iwd~ 661 (915)
|+-+...++..|+.|..|-.
T Consensus 345 ~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 345 PDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CchhhhhccccCCccccccc
Confidence 99999999999999999976
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-21 Score=205.63 Aligned_cols=277 Identities=10% Similarity=0.066 Sum_probs=204.2
Q ss_pred EEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEE-EEEECCCeEEEEEecC
Q 002494 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYNP 439 (915)
Q Consensus 361 ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l-~s~~~dg~i~vwd~~~ 439 (915)
++++++.|+.|++||..+++.+.. +..+ ..+.+++|+|+++.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 678899999999999998875542 2223 346789999999977 5667789999999998
Q ss_pred CCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeC
Q 002494 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI 519 (915)
Q Consensus 440 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~ 519 (915)
++... .+..+. .+..++|+|+++. ++++++.++.+++||+.+++.+..+.. ...+.+++|+|++ .++++++.
T Consensus 63 ~~~~~---~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg--~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGP-DPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDG--KIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCC-CccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCC--CEEEEEec
Confidence 76544 333333 3567899999984 445556789999999998887777753 3446788888754 68888877
Q ss_pred CC-eEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCC------CceE
Q 002494 520 DG-KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLG 592 (915)
Q Consensus 520 dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~ 592 (915)
++ .+..||..+........ ......+++|+|+|+++++++. .++.|++||+.+++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 56778987665544332 2334578999999998876542 367899999999988776543211 1234
Q ss_pred EEEEcCCCCEEEE-EeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEE-eCCCcEEEEEcCCCceeeee
Q 002494 593 VVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRM 670 (915)
Q Consensus 593 ~~~~sp~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~ 670 (915)
.++|+|+++++++ .+.++.+.+||+.+++.+..+.. .+ .+.+++|+|+|++|+++ +.+|.|++||+.++ +++..
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~--~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~ 286 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV-GQ--RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS 286 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-CC--CcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 6889999998655 45567899999998887766542 22 68899999999999886 46899999999998 66666
Q ss_pred ccC
Q 002494 671 LEG 673 (915)
Q Consensus 671 ~~~ 673 (915)
+..
T Consensus 287 ~~~ 289 (300)
T TIGR03866 287 IKV 289 (300)
T ss_pred EEc
Confidence 653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=190.23 Aligned_cols=252 Identities=17% Similarity=0.249 Sum_probs=200.6
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC--CCCE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--d~~~ 422 (915)
|.+-|..+...--|+ .|||++.|++|+|+.+.++... .....+.+|.++|+.++|-. .|..
T Consensus 10 H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s----------------~ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQS----------------KLLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCc----------------eeeeEecCCCCCeeEEeecccccCcE
Confidence 888888888888887 4899999999999999876531 12233789999999999987 8999
Q ss_pred EEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC-e--eEEEecCCCCC
Q 002494 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-R--KQYTFEGHEAP 499 (915)
Q Consensus 423 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~-~--~~~~~~~~~~~ 499 (915)
||+++.||.|.||.-+++ ...+......|...|++++|.|.+-.+.|++++.||.|.|.+.++. . .......|.-.
T Consensus 73 LAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 999999999999998887 3333345668999999999999988778999999999999987754 1 22344579999
Q ss_pred EEEEEeecCCC-c-----------cEEEEEeCCCeEEEEecCCCCc--eeEecCCCCcEEEEEECCCC----CEEEEEee
Q 002494 500 VYSVCPHHKES-I-----------QFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADG----TRLFSCGT 561 (915)
Q Consensus 500 v~~i~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~sp~g----~~l~~~~~ 561 (915)
|++++|.|..- | +.|++|+.|..|+||+.+...- ...+..|...|..++|.|.- .+|++++.
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 99999988621 1 5799999999999999887532 23477899999999999964 46788875
Q ss_pred cCCCCceEEEEECCCC--eeE-EEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 002494 562 SKEGESHLVEWNESEG--AIK-RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (915)
Q Consensus 562 ~~~~~~~i~~wd~~~~--~~~-~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 619 (915)
|+++.+|..+.. ... ..++.... .+..+.||+.|+.|++++.|++|.+|.-..
T Consensus 232 ----Dg~viIwt~~~e~e~wk~tll~~f~~-~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 232 ----DGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ----CCcEEEEEecCccCcccccccccCCc-ceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 788999986521 111 22233333 799999999999999999999999997653
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=202.75 Aligned_cols=254 Identities=13% Similarity=0.167 Sum_probs=208.9
Q ss_pred CeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEec
Q 002494 359 QTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN 438 (915)
Q Consensus 359 ~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~ 438 (915)
.+++++-.....+.+|.+......... ---.++|.|++-+|+|.+|+.|+..|.+++|.+.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~-------------------~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels 111 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQY-------------------IVLPGPVHALASSNLGYFLLAGTISGNLYLWELS 111 (476)
T ss_pred hheeeecccCccccccccCchhhhhhh-------------------cccccceeeeecCCCceEEEeecccCcEEEEEec
Confidence 355554445567888888765544321 1145689999999999999999999999999999
Q ss_pred CCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcC---------CCeeEEEecCCCCCEEEEEeecCC
Q 002494 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---------AGRKQYTFEGHEAPVYSVCPHHKE 509 (915)
Q Consensus 439 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~---------~~~~~~~~~~~~~~v~~i~~~~~~ 509 (915)
+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|++. +-++.+.|..|.-+|+++...+.+
T Consensus 112 sG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg 186 (476)
T KOG0646|consen 112 SGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG 186 (476)
T ss_pred cccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC
Confidence 998776 5678999999999999999 89999999999999864 236788899999999999988776
Q ss_pred CccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCC-------------
Q 002494 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE------------- 576 (915)
Q Consensus 510 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~------------- 576 (915)
...+++|+|.|.++++||+..+..+..+. ....+.+++.+|-++.++.|+. +|.|.+.++..
T Consensus 187 ~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~----~G~I~~~~~~~~~~~~~~v~~k~~ 261 (476)
T KOG0646|consen 187 TNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTE----EGKIFQNLLFKLSGQSAGVNQKGR 261 (476)
T ss_pred ccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCC----cceEEeeehhcCCccccccccccc
Confidence 56799999999999999999886666554 4557899999999999999875 77788777642
Q ss_pred ---CeeEEEecCCCC-CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCC
Q 002494 577 ---GAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (915)
Q Consensus 577 ---~~~~~~~~~~~~-~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 643 (915)
+..+..+.||.+ ..|+|++.+-||..|++|+.||+|.|||+.+.++++++....+ +|+.+.+.|-
T Consensus 262 ~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kg--pVtnL~i~~~ 330 (476)
T KOG0646|consen 262 HEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKG--PVTNLQINPL 330 (476)
T ss_pred ccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcc--ccceeEeecc
Confidence 234566778876 4899999999999999999999999999999999988874333 8999998774
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-22 Score=213.78 Aligned_cols=278 Identities=15% Similarity=0.204 Sum_probs=220.8
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEE
Q 002494 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (915)
Q Consensus 344 ~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l 423 (915)
.|..+-+.++|.|+|. ++++++.||.|++|+......... .+..+...|.+++- ++++|
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~------------------ti~~~g~~v~~ia~--~s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE------------------TIDISGELVSSIAC--YSNHF 69 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc------------------hhhccCceeEEEee--cccce
Confidence 4788899999999998 678888999999999876531110 12226777777765 45699
Q ss_pred EEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEE
Q 002494 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (915)
Q Consensus 424 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 503 (915)
++|+.+++|.+|.+..+..-. .+...+-++.+++|+.+|. +++.||.|-.|++.++.+......+++|..+|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999998876533 3334566899999999999 79999999999999999999999999999999999
Q ss_pred EeecCCCccEEEEEeCCCeEEEEecCCCCceeEecC-------C-CCcEEEEEECCCCCEEEEEeecCCCCceEEEEECC
Q 002494 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------P-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (915)
Q Consensus 504 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~-~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~ 575 (915)
.++|.+ ++|++.+-||.|++||+.++.....+.. . ...+..++|+|+|..+++... ++.|.+|+..
T Consensus 145 ~~~p~~--~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDPKG--NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcCCC--CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 998865 7999999999999999998766544322 1 336788999999777666654 7779999999
Q ss_pred CCeeEEEecCCCCC-ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCC
Q 002494 576 EGAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (915)
Q Consensus 576 ~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg 654 (915)
++.....+...... .+.+++|+|+|.|||+++.||.|.|||.++-.. |.....|++++|.|+.+.+-.-...|
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeecc
Confidence 99888887754332 488999999999999999999999999997221 33334789999999887665554444
Q ss_pred cEEEE
Q 002494 655 GIKIL 659 (915)
Q Consensus 655 ~i~iw 659 (915)
...+|
T Consensus 293 ~~~~~ 297 (933)
T KOG1274|consen 293 TLGVS 297 (933)
T ss_pred ccccC
Confidence 44433
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-20 Score=205.10 Aligned_cols=476 Identities=13% Similarity=0.127 Sum_probs=300.0
Q ss_pred eeecCCCCCceeeecCC------CcccEEEEec-CCCCEEEEEEcCCCC--eEEEEEeCCCcEEEEEcCCCceecccce-
Q 002494 318 VSFAGVAHTPNVYSQDD------LTKTVVRTLN-QGSNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGSRERLAHKPF- 387 (915)
Q Consensus 318 ~~~s~~g~~~~~~~~d~------~~~~~~~~l~-h~~~V~~v~fspd~~--~ll~~gs~dg~v~iwd~~~~~~~~~~~~- 387 (915)
..||+|++.+.....+. .++.+++.+. |...+..+.+.|... .++.+++.+|.|++||...++.+.....
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~ 101 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNN 101 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecC
Confidence 45888888876655443 4788888888 999999999998776 4567899999999999999988764221
Q ss_pred -eeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEEC--CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecC
Q 002494 388 -KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP 464 (915)
Q Consensus 388 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 464 (915)
++..+... .. +..+ ++....+..+-..+.+.+. .+.++-+.+.+..... ...+..|.. -.++.+++.
T Consensus 102 ~~v~~~~~~-----~~-~a~~--s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~-~d~~~~~~~-~~~I~~~~~ 171 (792)
T KOG1963|consen 102 LPVHALVYK-----PA-QADI--SANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAK-GDFLKEHQE-PKSIVDNNS 171 (792)
T ss_pred CceeEEEec-----hh-HhCc--cceeEeecccceeeeecccccccceeeeEeeeccccc-hhhhhhhcC-CccEEEcCC
Confidence 11110000 00 0000 0111111112222222221 1222222222211100 001112222 467788888
Q ss_pred CCeEEEEEEeCCCcEEEEEcCCCeeEEE----ecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCC----CCceeE
Q 002494 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYT----FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY----LGSRVD 536 (915)
Q Consensus 465 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~----~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~ 536 (915)
|. +.....+..+.+|+..++..... -..|...+++.+++|.+ +++++|..||.|.+|.--. ......
T Consensus 172 ge---~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~--~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~ 246 (792)
T KOG1963|consen 172 GE---FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE--RYLAAGDSDGRILVWRDFGSSDDSETCTL 246 (792)
T ss_pred ce---EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecccc--ceEEEeccCCcEEEEeccccccccccceE
Confidence 87 34444567789999887542111 12366778999999865 7999999999999995322 122345
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 002494 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (915)
Q Consensus 537 ~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 616 (915)
+..|...|.+++|+++|.+|++|+. .+.+.+|.+.+++ ++|-..-+.+|..+.++||+.+.+....|+.|.+..
T Consensus 247 lHWH~~~V~~L~fS~~G~~LlSGG~----E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 247 LHWHHDEVNSLSFSSDGAYLLSGGR----EGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred EEecccccceeEEecCCceEeeccc----ceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEe
Confidence 6778889999999999999999985 7889999999988 444433444899999999999999999999999999
Q ss_pred CCCCceEEEEcCCCC---------CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCC
Q 002494 617 MDNMNMLTTVDADGG---------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (915)
Q Consensus 617 ~~~~~~~~~~~~~~~---------~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 687 (915)
..+.....++.+... ..-.+.++++|.-+.++..+..|.|.+||+.+. ..+..+.--........
T Consensus 321 ~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td-~~i~~~~v~~~n~~~~~----- 394 (792)
T KOG1963|consen 321 ASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD-STIYKLQVCDENYSDGD----- 394 (792)
T ss_pred ccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccc-ceeeeEEEEeecccCCc-----
Confidence 876655555543211 123567899997788888999999999999987 33333321110000000
Q ss_pred CCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCC-----------CceeEeecCCCC
Q 002494 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-----------DKIKSWRIPDIS 756 (915)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-----------~~v~iw~~~~~~ 756 (915)
...... .+..+.+..|.++++... ..+++|......
T Consensus 395 ---~n~~v~------------------------------itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 395 ---VNIQVG------------------------------ITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred ---ceeEEe------------------------------eeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 000000 012234445666666532 356899988755
Q ss_pred CccceeEeecCCccCCCceEEEEEecC--CceEEEeeccceeEEeecccccCCCCCCccccccceeecCCCCCceeccCC
Q 002494 757 DPSQIKALRLPDSIAASKVVRLIYTNS--GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDIN 834 (915)
Q Consensus 757 ~~~~~~~~~~~~~~h~~~I~~l~~s~d--~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~ 834 (915)
....+..... .+|...+...+|.+. ...+++++.||.++||-+...+= ++. .+....+..-
T Consensus 442 kt~~L~T~I~--~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n-------------~~k--~~s~W~c~~i 504 (792)
T KOG1963|consen 442 KTFILNTKIN--NPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSN-------------IYK--KSSNWTCKAI 504 (792)
T ss_pred ceeEEEEEEe--cCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccc-------------cCc--CccceEEeee
Confidence 5555543222 236776666666443 22579999999999998855320 011 1111122233
Q ss_pred CCCCCCCceeEEEEecCCCeEEEecCCeeEEeeccCC
Q 002494 835 ESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTF 871 (915)
Q Consensus 835 ~~~h~~~~I~~l~~S~dg~~L~s~sd~~v~vw~l~t~ 871 (915)
+..| ..++++++||.||..|+.+-|++|.+||..+.
T Consensus 505 ~sy~-k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 505 GSYH-KTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred eccc-cCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 3346 99999999999998888877999999999883
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=205.33 Aligned_cols=279 Identities=17% Similarity=0.327 Sum_probs=223.7
Q ss_pred cccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC---eeEEEecC--CCCCEEEEEeecCCCccEEEEEeCCCeEEE
Q 002494 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (915)
Q Consensus 451 ~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~dg~i~i 525 (915)
.|..-|.++.+|...+ .++||+. |.|+|||+... .++..+.. ....|+++.+.++ |+.|++|+.-.++.|
T Consensus 417 ~HGEvVcAvtIS~~tr--hVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd--grtLivGGeastlsi 491 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTR--HVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD--GRTLIVGGEASTLSI 491 (705)
T ss_pred ccCcEEEEEEecCCcc--eeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC--CceEEeccccceeee
Confidence 5788889999998888 6888885 78999998753 23333332 4567888888874 478999999999999
Q ss_pred EecCCCCceeEecCC--CCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEE
Q 002494 526 WLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF 603 (915)
Q Consensus 526 wd~~~~~~~~~~~~~--~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 603 (915)
||+......+..... ...+..++.+||.+..++|.. +|.|.|||+.+...++.|+||.+ .+.|+.++++|..|
T Consensus 492 WDLAapTprikaeltssapaCyALa~spDakvcFsccs----dGnI~vwDLhnq~~VrqfqGhtD-GascIdis~dGtkl 566 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS----DGNIAVWDLHNQTLVRQFQGHTD-GASCIDISKDGTKL 566 (705)
T ss_pred eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc----CCcEEEEEcccceeeecccCCCC-CceeEEecCCCcee
Confidence 999887766544433 346788999999999888885 77799999999999999999999 89999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCC
Q 002494 604 LAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPS 683 (915)
Q Consensus 604 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 683 (915)
.+|+-|++||.||++.++.+....... .|.++.++|++.++++|-.++.+.|.......
T Consensus 567 WTGGlDntvRcWDlregrqlqqhdF~S---QIfSLg~cP~~dWlavGMens~vevlh~skp~------------------ 625 (705)
T KOG0639|consen 567 WTGGLDNTVRCWDLREGRQLQQHDFSS---QIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE------------------ 625 (705)
T ss_pred ecCCCccceeehhhhhhhhhhhhhhhh---hheecccCCCccceeeecccCcEEEEecCCcc------------------
Confidence 999999999999999987766554433 78999999999999999998888766543220
Q ss_pred CCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCCCceeEeecCCCCCccceeE
Q 002494 684 EPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKA 763 (915)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~~~v~iw~~~~~~~~~~~~~ 763 (915)
...+.
T Consensus 626 --------------------------------------------------------------------------kyqlh- 630 (705)
T KOG0639|consen 626 --------------------------------------------------------------------------KYQLH- 630 (705)
T ss_pred --------------------------------------------------------------------------ceeec-
Confidence 00111
Q ss_pred eecCCccCCCceEEEEEecCCceEEEeeccceeEEeecccccCCCCCCccccccceeecCCCCCceeccCCCCCCCCCce
Q 002494 764 LRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESA 843 (915)
Q Consensus 764 ~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~I 843 (915)
-|.+.|.++.|++-|+++++.+.|..+..|..+.+ ..+.. .+. +..|
T Consensus 631 ------lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG----------------------asiFq-skE----~SsV 677 (705)
T KOG0639|consen 631 ------LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG----------------------ASIFQ-SKE----SSSV 677 (705)
T ss_pred ------ccccEEEEEEecccCceeeecCchhhhhhccCccc----------------------cceee-ccc----cCcc
Confidence 17788999999999999999999999998865542 21111 343 7899
Q ss_pred eEEEEecCCCeEEEec-CCeeEEeec
Q 002494 844 ACIALSKNDSYVMSAS-GGKVSLFNM 868 (915)
Q Consensus 844 ~~l~~S~dg~~L~s~s-d~~v~vw~l 868 (915)
.+..+|.|++|+|||| |..-.||.+
T Consensus 678 lsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 678 LSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999999 888888865
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=202.39 Aligned_cols=250 Identities=14% Similarity=0.167 Sum_probs=205.0
Q ss_pred CEEEEEEC-CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCC
Q 002494 421 LMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (915)
Q Consensus 421 ~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 499 (915)
.+++++.. ...+.+|.+.......+.. --.++|.+++-+|+|. +++.|+-.|.+++|.+.+|..+..+.+|...
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~---v~Pg~v~al~s~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ 125 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYI---VLPGPVHALASSNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHYQS 125 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhc---ccccceeeeecCCCce--EEEeecccCcEEEEEeccccHHHHHHhhccc
Confidence 56666654 4579999987755443221 2356899999999998 7887779999999999999999999999999
Q ss_pred EEEEEeecCCCccEEEEEeCCCeEEEEecC---------CCCceeEecCCCCcEEEEEECCCC--CEEEEEeecCCCCce
Q 002494 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYD---------YLGSRVDYDAPGNWCTMMAYSADG--TRLFSCGTSKEGESH 568 (915)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~---------~~~~~~~~~~~~~~i~~~~~sp~g--~~l~~~~~~~~~~~~ 568 (915)
|+++.|+. ||.+|++|+.||.|.+|++. +......+..|.-+|+++...+.| .++++++. |.+
T Consensus 126 ITcL~fs~--dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~----D~t 199 (476)
T KOG0646|consen 126 ITCLKFSD--DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE----DRT 199 (476)
T ss_pred eeEEEEeC--CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC----Cce
Confidence 99999976 55899999999999999763 234455677888899999887654 47788874 888
Q ss_pred EEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----------------ceEEEEcCCCCC
Q 002494 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----------------NMLTTVDADGGL 632 (915)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~ 632 (915)
+++||+..|..+.++.-.. .+.+++.+|-+..+++|+.+|.|.+.++... ..+..+.+|.+.
T Consensus 200 ~k~wdlS~g~LLlti~fp~--si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~ 277 (476)
T KOG0646|consen 200 IKLWDLSLGVLLLTITFPS--SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE 277 (476)
T ss_pred EEEEEeccceeeEEEecCC--cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC
Confidence 9999999999988877655 7999999999999999999999999887532 234555666665
Q ss_pred CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCC
Q 002494 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSE 684 (915)
Q Consensus 633 ~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 684 (915)
..|++++++-||.+|++|+.||.|.|||+.+. ++++++....+.|+.+.+.
T Consensus 278 ~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~-Q~iRtl~~~kgpVtnL~i~ 328 (476)
T KOG0646|consen 278 SAITCLAISTDGTLLLSGDEDGKVCVWDIYSK-QCIRTLQTSKGPVTNLQIN 328 (476)
T ss_pred cceeEEEEecCccEEEeeCCCCCEEEEecchH-HHHHHHhhhccccceeEee
Confidence 68999999999999999999999999999998 8888888667777766554
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=215.88 Aligned_cols=297 Identities=11% Similarity=0.179 Sum_probs=228.1
Q ss_pred CCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC-CCCEEE
Q 002494 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLG 424 (915)
Q Consensus 346 ~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-d~~~l~ 424 (915)
+....++...++-..+++.| ...+.||.+....... ++.+..-. -..-...+..+.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~--~~~~~~k~----------kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSE--KCNHRFKT----------KQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEec--ccceeeEeeCcccCCc--ceeeeccc----------ccceeeehhhcccccchhhhhe
Confidence 55677888888877655544 5678888776543221 11111000 011122355677875 578999
Q ss_pred EEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEE
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~ 504 (915)
+++..|.|.+||+.....-+....+..|...++++.|++...+ +|++|+.||+|++||++..+-..++.+....|+.+.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873322333367789999999999999888 899999999999999999998899999999999999
Q ss_pred eecCCCccEEEEEeCCCeEEEEecCCCC-ceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEe
Q 002494 505 PHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (915)
Q Consensus 505 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (915)
|+|.. +.+++++.+.|.+++||++... ....+..|.++|.++.|+|++.+||+|+. |+.|++||..+++.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99974 5899999999999999998754 45577889999999999999999999985 777999999877665555
Q ss_pred cCCCCCceEEEEEcCCCCE-EEEEe--CCCcEEEEeCCCC-ceEEEEcCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEE
Q 002494 584 SGFRKRSLGVVQFDTTRNR-FLAAG--DEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (915)
Q Consensus 584 ~~~~~~~v~~~~~sp~~~~-l~s~~--~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i~i 658 (915)
.-+...++.++.|-|...+ |++++ .|-.|+|||++.. -+..++..|.. .++.++|.. |...+.+++.||+|..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~--~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD--SVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc--cccceeccCCCceeeEeecCccHHHH
Confidence 5555568999999998765 44444 5889999999753 34455666655 889999976 6778899999998876
Q ss_pred EEcCCC
Q 002494 659 LANSDG 664 (915)
Q Consensus 659 wd~~~~ 664 (915)
-.++++
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 555544
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=222.17 Aligned_cols=236 Identities=17% Similarity=0.321 Sum_probs=212.8
Q ss_pred CCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEc
Q 002494 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (915)
Q Consensus 405 ~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~ 484 (915)
..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. ++++|+.+|+|++||+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeeeh
Confidence 4588899999987788999999999999999987765544 5789999999999999988 8999999999999999
Q ss_pred CCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCC
Q 002494 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (915)
Q Consensus 485 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~ 564 (915)
..++.++++.+|...+.++.|+|.. .++++|+.|+.+++||.+..++...+.+|...+..+.|+|+|++++.++.
T Consensus 100 eeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e--- 174 (825)
T KOG0267|consen 100 EEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE--- 174 (825)
T ss_pred hhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC---
Confidence 9999999999999999999999865 78899999999999999999999999998889999999999999999874
Q ss_pred CCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCC
Q 002494 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (915)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 644 (915)
|..+++||...|+....|.+|.+ .+..+.|+|..-.++.|+.|+++++||+++-+.+....... ..|.+..|+|++
T Consensus 175 -d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~--~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 175 -DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPET--DGVRSLAFNPDG 250 (825)
T ss_pred -cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCcc--CCceeeeecCCc
Confidence 78899999999999999999998 89999999998889999999999999999888877766553 389999999999
Q ss_pred CEEEEEeCCC
Q 002494 645 SLLAVTTSDN 654 (915)
Q Consensus 645 ~~l~s~~~dg 654 (915)
..+++|....
T Consensus 251 ~~~~~G~q~s 260 (825)
T KOG0267|consen 251 KIVLSGEQIS 260 (825)
T ss_pred eeeecCchhh
Confidence 9988886543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-22 Score=187.97 Aligned_cols=262 Identities=12% Similarity=0.212 Sum_probs=201.5
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeE
Q 002494 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (915)
Q Consensus 411 v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 490 (915)
..|+.|++.|.+||+|..||.|.|||+.+...-+ .+.+|..+|++++||+||. .|+|++.|..+.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999865433 5779999999999999999 7999999999999999999999
Q ss_pred EEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCC----cEEEEEECCCCCEEEEEeecCCCC
Q 002494 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----WCTMMAYSADGTRLFSCGTSKEGE 566 (915)
Q Consensus 491 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~~~~~~ 566 (915)
+.++ ..++|+.+.|+|......+++ -.+..-.+-++........-....+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEE-EecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9887 788999999999876444444 3444445555554332221111111 2233468899999999974 8
Q ss_pred ceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------ceE--EEEcCCCCCCCcce
Q 002494 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-------NML--TTVDADGGLPASPR 637 (915)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v~~ 637 (915)
|.+.++|..+-+++..++-.....|..+.++..|++|+.-+.|..||.|+++.- ++. +.++.--....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 889999999999999888766347899999999999999999999999998631 111 11111111113457
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEEcCCCceeeeeccCCCC-cccccCCC
Q 002494 638 LRFNKEGSLLAVTTS-DNGIKILANSDGVRLLRMLEGRAM-DKNRCPSE 684 (915)
Q Consensus 638 v~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~ 684 (915)
++||.+|.|++.++. ...++||.-..| .+++.+.|..+ ....+.+.
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~kgE~l~DV~wh 302 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTKGEELLDVNWH 302 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCchhheeecccc
Confidence 899999999988764 567999999999 89999998884 44456565
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-20 Score=197.17 Aligned_cols=274 Identities=12% Similarity=0.086 Sum_probs=199.6
Q ss_pred cCCCcccEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCe
Q 002494 332 QDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (915)
Q Consensus 332 ~d~~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 411 (915)
+|..+++.+..+.+...+.+++|+|+|+.++++++.++.|++||..+++.... +..+ ..+
T Consensus 16 ~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-------------------~~~~-~~~ 75 (300)
T TIGR03866 16 IDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT-------------------LPSG-PDP 75 (300)
T ss_pred EECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe-------------------ccCC-CCc
Confidence 34445667777776566889999999986667778899999999998875532 1122 235
Q ss_pred EEEEEcCCCCEEEEE-ECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCC-cEEEEEcCCCee
Q 002494 412 NRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-MIKVWDVVAGRK 489 (915)
Q Consensus 412 ~~~~~spd~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~-~i~vwd~~~~~~ 489 (915)
..++|+|+++.++++ +.++.+++||+.+++.+. .+. +...+.+++|+|++. ++++++.++ .+.+||..+++.
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~---~~~-~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLA---EIP-VGVEPEGMAVSPDGK--IVVNTSETTNMAHFIDTKTYEI 149 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe---Eee-CCCCcceEEECCCCC--EEEEEecCCCeEEEEeCCCCeE
Confidence 678999999987655 568999999998865443 232 233578899999999 677776654 577889888877
Q ss_pred EEEecCCCCCEEEEEeecCCCccEEE-EEeCCCeEEEEecCCCCceeEecCCC-------CcEEEEEECCCCCEEEEEee
Q 002494 490 QYTFEGHEAPVYSVCPHHKESIQFIF-STAIDGKIKAWLYDYLGSRVDYDAPG-------NWCTMMAYSADGTRLFSCGT 561 (915)
Q Consensus 490 ~~~~~~~~~~v~~i~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~i~~~~~sp~g~~l~~~~~ 561 (915)
...+. .......++|++++ ++++ ++..++.|++||+++.+....+..+. .....++|+|+|++++++..
T Consensus 150 ~~~~~-~~~~~~~~~~s~dg--~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 150 VDNVL-VDQRPRFAEFTADG--KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred EEEEE-cCCCccEEEECCCC--CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence 65543 23345678887754 5664 55569999999999876554433211 12356889999998765542
Q ss_pred cCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEE
Q 002494 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (915)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 640 (915)
.++.+.+||.++++.+..+... . .+.+++|+|+|++|+++ +.+|.|++||+.+++.+..+.... ..+.+++
T Consensus 227 ---~~~~i~v~d~~~~~~~~~~~~~-~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~ 298 (300)
T TIGR03866 227 ---PANRVAVVDAKTYEVLDYLLVG-Q-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR---LPWGVVV 298 (300)
T ss_pred ---CCCeEEEEECCCCcEEEEEEeC-C-CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc---ccceeEe
Confidence 2456999999988877655432 2 68899999999999886 468999999999999999997653 4578887
Q ss_pred cC
Q 002494 641 NK 642 (915)
Q Consensus 641 s~ 642 (915)
+|
T Consensus 299 ~~ 300 (300)
T TIGR03866 299 RP 300 (300)
T ss_pred CC
Confidence 65
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-22 Score=212.49 Aligned_cols=281 Identities=16% Similarity=0.232 Sum_probs=214.1
Q ss_pred cCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeee-EEee---cccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEc
Q 002494 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH-LEID---AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (915)
Q Consensus 409 ~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~---~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~ 484 (915)
.....++..++-..++.++. ..+.||.+......... .... .-...+.++.|..-..+ +|+|++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N-lIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN-LIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh-hheeecCCCcEEEEec
Confidence 34566777888888888876 36677776543221110 0111 11124667888865555 8999999999999999
Q ss_pred CC---CeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCC-CCEEEEEe
Q 002494 485 VA---GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-GTRLFSCG 560 (915)
Q Consensus 485 ~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~ 560 (915)
.. .+.+..|..|...+++++|++... .+|++|+.||+|++||++.......+......|..+.|+|. +..++++.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCc-cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 87 566778889999999999998744 79999999999999999998888888888889999999995 45566654
Q ss_pred ecCCCCceEEEEECCCC-eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEE
Q 002494 561 TSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (915)
Q Consensus 561 ~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 639 (915)
..|.+.+||++.. ++...+..|.+ +|.++.|+|++.+||+||.|+.|+|||+.+.+.......+. ..+|..+.
T Consensus 197 ----dsG~lqlWDlRqp~r~~~k~~AH~G-pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~rVk 270 (839)
T KOG0269|consen 197 ----DSGYLQLWDLRQPDRCEKKLTAHNG-PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGRVK 270 (839)
T ss_pred ----CCceEEEeeccCchhHHHHhhcccC-ceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceeeeee
Confidence 3788999999864 46777889998 99999999999999999999999999998654333222222 22899999
Q ss_pred EcCCC-CEEEEEe--CCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccc
Q 002494 640 FNKEG-SLLAVTT--SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (915)
Q Consensus 640 ~s~~~-~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (915)
|-|+. ..||+++ .|-.|+|||+.-..-+..++..|...+..+.|.. .|...+-+.+.++
T Consensus 271 WRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~-----~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 271 WRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS-----GDRINLWSCSKDG 332 (839)
T ss_pred eccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC-----CCceeeEeecCcc
Confidence 99965 4566665 3889999999988778889999999888887774 3444444445444
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=203.20 Aligned_cols=291 Identities=18% Similarity=0.203 Sum_probs=211.4
Q ss_pred EEEEcC--CCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEEC
Q 002494 351 SMDFHP--QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (915)
Q Consensus 351 ~v~fsp--d~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~ 428 (915)
+..|++ ..+.+||.+..+|.|.++|.....-..+ .........|.+.|..+.|-|....|++++.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~e-------------e~~lk~~~aH~nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLE-------------ERQLKKPLAHKNAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchh-------------hhhhcccccccceeEeeccCCCceeEEEccC
Confidence 355553 4456899999999999999876432210 0011224669999999999997778999999
Q ss_pred CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCe--------------------
Q 002494 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-------------------- 488 (915)
Q Consensus 429 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~-------------------- 488 (915)
|.++++||+++++..... .+.+|.+.|.+++|.|++.. .|++|+.||.|.|||++...
T Consensus 121 DsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred Cceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 999999999998776543 46799999999999999987 89999999999999987331
Q ss_pred -------eEEEecCCCCCEEE---EEeecCCCccEEEEEeC-CCeEEEEecCCCCceeE--------ecCC---CCcEEE
Q 002494 489 -------KQYTFEGHEAPVYS---VCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVD--------YDAP---GNWCTM 546 (915)
Q Consensus 489 -------~~~~~~~~~~~v~~---i~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~--------~~~~---~~~i~~ 546 (915)
.+.....+...|.+ +.+.. |...|++++. |+.|++||++....... +..+ ...+.+
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 01111234444443 23333 3368888887 99999999987654332 1122 236778
Q ss_pred EEECCCCCEEEEEeecCCCCceEEEEECCCC--eeEEEecCCCCCceE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCce-
Q 002494 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYSGFRKRSLG-VVQFDTTRNRFLAAGDEFQIKFWDMDNMNM- 622 (915)
Q Consensus 547 ~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~-~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~- 622 (915)
+.....|.++++.+. |+.|++||+.+- .++..+.++....++ .-..+|++.++++|+.|...++|.+.+.+.
T Consensus 277 L~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 277 LILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred EEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence 888888898876664 778999999753 345555555432222 234689999999999999999999987543
Q ss_pred EEEEcCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 002494 623 LTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 623 ~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
...+.+|.- .|++++|.| .-.-++++++|.+++||++..+
T Consensus 353 ~~~l~Ght~--eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 353 PALLLGHTR--EVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhhhCcce--EEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 344445543 899999998 3445677799999999999776
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=199.90 Aligned_cols=322 Identities=10% Similarity=0.130 Sum_probs=233.1
Q ss_pred cccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEE
Q 002494 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (915)
Q Consensus 402 ~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~v 481 (915)
.++.+|++.|.|++..|.|.+|++|+.||+|+||.+.+|.+++.. . ..+.|.|++|+|.+.. .++++..+..+.|
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~-~---~d~~I~~vaw~P~~~~-~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV-Q---FDSEIRSVAWNPLSDL-CVLAVAVGECVLI 468 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE-e---ecceeEEEEecCCCCc-eeEEEEecCceEE
Confidence 347899999999999999999999999999999999999888743 2 3458999999999886 4444444555777
Q ss_pred EEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEE----eCCCeEEEEecCCC----CceeEecCCCCcEEEEEECCCC
Q 002494 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST----AIDGKIKAWLYDYL----GSRVDYDAPGNWCTMMAYSADG 553 (915)
Q Consensus 482 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~----~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~~~~sp~g 553 (915)
.+..-|..+..-.. . ..|.++ ..++.+..|.-... ..+.....+...|..+.|+..|
T Consensus 469 vnp~~G~~~e~~~t--~-------------ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPT--K-------------ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred eCccccchhhhcch--h-------------hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 66544422211100 0 111111 22445666754321 1123334577789999999999
Q ss_pred CEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCC
Q 002494 554 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (915)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (915)
.||++...+. +...|.|.++.......-|....+ .+.++.|+|...+|++++.. .|+|||+..+..++.+.....
T Consensus 534 DYlatV~~~~-~~~~VliHQLSK~~sQ~PF~kskG-~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~k-- 608 (733)
T KOG0650|consen 534 DYLATVMPDS-GNKSVLIHQLSKRKSQSPFRKSKG-LVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSK-- 608 (733)
T ss_pred ceEEEeccCC-CcceEEEEecccccccCchhhcCC-ceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCe--
Confidence 9999887543 467788999887666555655455 78999999999999988865 799999998877776654433
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCC
Q 002494 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (915)
Q Consensus 634 ~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 713 (915)
.|.+++.+|.|..|+.|+.|+.+..+|+.-+.+..+++..|...+..++++
T Consensus 609 wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H----------------------------- 659 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFH----------------------------- 659 (733)
T ss_pred eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhc-----------------------------
Confidence 789999999999999999999999999998778889999999888776555
Q ss_pred CCCCCCcccccccCCCceeccCCceeeccCC-CceeEeecCC----CCCccceeEeecCCccCCCc----eEEEEEecCC
Q 002494 714 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPD----ISDPSQIKALRLPDSIAASK----VVRLIYTNSG 784 (915)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~~~----~~~~~~~~~~~~~~~~h~~~----I~~l~~s~d~ 784 (915)
+--.+++++++ +++.|+.-.- ..++.....-.+.| |... |....|+|..
T Consensus 660 --------------------~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~g--H~~~~~~gVLd~~wHP~q 717 (733)
T KOG0650|consen 660 --------------------KRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRG--HEKTNDLGVLDTIWHPRQ 717 (733)
T ss_pred --------------------cccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccC--ceeecccceEeecccCCC
Confidence 22234555555 5665554211 11122233334556 5444 8999999999
Q ss_pred ceEEEeeccceeEEe
Q 002494 785 LSLLALASNAVHKLW 799 (915)
Q Consensus 785 ~~l~~~~~dg~v~iW 799 (915)
.+|++++.||+|++|
T Consensus 718 pWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 718 PWLFSAGADGTIRLF 732 (733)
T ss_pred ceEEecCCCceEEee
Confidence 999999999999998
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-21 Score=197.91 Aligned_cols=212 Identities=13% Similarity=0.169 Sum_probs=156.9
Q ss_pred ccCCCccCeEEEEEcC-CCCEEEEEECCCeEEEEEecCCCcee---eeEEeecccCCeeEEEEecCCCeEEEEEEeCCCc
Q 002494 403 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELR---QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (915)
Q Consensus 403 ~~~~~~~~v~~~~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~ 478 (915)
.+.+|...|+.+.|+| +..+||+|+.|..|+||.+..|-... ....+.+..-.|.++.|+|.... ++++ +..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s-~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILAS-GAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEe-ccCce
Confidence 3678999999999999 56789999999999999998543211 11122233447889999998886 4554 45689
Q ss_pred EEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCcee-EecCCCC-cEEEEEECCCCCEE
Q 002494 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGN-WCTMMAYSADGTRL 556 (915)
Q Consensus 479 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~-~i~~~~~sp~g~~l 556 (915)
++|||+.+++.+..+.+|...|.++.|+- +|.++++++.|..|+|||-+...... ....|++ .-..+.|--+-.+|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Wse--DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSE--DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccccc--CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 99999999999999999999999999975 66899999999999999998765544 4445544 33566777666678
Q ss_pred EEEeecCCCCceEEEEECCC-CeeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEeCC
Q 002494 557 FSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMD 618 (915)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~ 618 (915)
++.+.+......+++||.+. +..+.++.-.....+..--|.||.++++.++ .+.+++.+.+.
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~ 293 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQ 293 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEec
Confidence 87776555566799999875 3445554433332455566889888776655 57778877664
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-21 Score=180.48 Aligned_cols=294 Identities=15% Similarity=0.190 Sum_probs=209.6
Q ss_pred cccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCe------------eE---EEecCCCCCEEEEEeecCCCccEEE
Q 002494 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR------------KQ---YTFEGHEAPVYSVCPHHKESIQFIF 515 (915)
Q Consensus 451 ~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~------------~~---~~~~~~~~~v~~i~~~~~~~~~~l~ 515 (915)
.|.+.|+++...+...+ ++++|+.||.|.+||+++.. ++ ..-.+|.-.|.++.|-|-..| .+.
T Consensus 41 ~HgGsvNsL~id~tegr-ymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-mFt 118 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGR-YMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-MFT 118 (397)
T ss_pred cCCCccceeeeccccce-EEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-eee
Confidence 58899999999987766 89999999999999997542 11 011257888999999998664 899
Q ss_pred EEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCC---EEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceE
Q 002494 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT---RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 592 (915)
Q Consensus 516 s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~---~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 592 (915)
+++.|.++++||.++.+....+.. .+.|++-++||-.. +++++.. +..|++.|+.+|..-..+.||.+ .|.
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr----~~~VrLCDi~SGs~sH~LsGHr~-~vl 192 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTR----DVQVRLCDIASGSFSHTLSGHRD-GVL 192 (397)
T ss_pred cccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecC----CCcEEEEeccCCcceeeeccccC-ceE
Confidence 999999999999999888777764 44678888888432 3445543 67799999999999999999999 899
Q ss_pred EEEEcCCCCEE-EEEeCCCcEEEEeCCCC-ceEEEEcCC------------CCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 002494 593 VVQFDTTRNRF-LAAGDEFQIKFWDMDNM-NMLTTVDAD------------GGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (915)
Q Consensus 593 ~~~~sp~~~~l-~s~~~dg~i~iwd~~~~-~~~~~~~~~------------~~~~~v~~v~~s~~~~~l~s~~~dg~i~i 658 (915)
++.|+|...++ ++|+.||.|++||++.. .+...+..| .+.+.|++++|+.++.++++++.|..+++
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 99999988765 56889999999999854 344443322 23346889999999999999999999999
Q ss_pred EEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCce
Q 002494 659 LANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKP 738 (915)
Q Consensus 659 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 738 (915)
|+..+|...++.+... ..-... .......... ...+++-|.+
T Consensus 273 wn~~~G~ntl~~~g~~----~~n~~~-------~~~~~~~~~~-------------------------s~vfv~~p~~-- 314 (397)
T KOG4283|consen 273 WNMESGRNTLREFGPI----IHNQTT-------SFAVHIQSMD-------------------------SDVFVLFPND-- 314 (397)
T ss_pred eecccCcccccccccc----cccccc-------cceEEEeecc-------------------------cceEEEEecC--
Confidence 9999985443332211 100000 0000000000 0111222222
Q ss_pred eeccCCCceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEeeccceeEEeeccc
Q 002494 739 RVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (915)
Q Consensus 739 la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~ 803 (915)
+++.++++-+ +..+. .+.+ |-..|.|.++-|+-+.+.+|..|+.+..|-...
T Consensus 315 ------~~lall~~~s---gs~ir--~l~~--h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~l 366 (397)
T KOG4283|consen 315 ------GSLALLNLLE---GSFVR--RLST--HLKRINCAAYRPDFEQCFTGDMNGNIYMWSPAL 366 (397)
T ss_pred ------CeEEEEEccC---ceEEE--eeec--ccceeeEEeecCchhhhhccccCCccccccccc
Confidence 4555555443 22332 2233 667799999999999999999999999996633
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.7e-21 Score=206.25 Aligned_cols=246 Identities=14% Similarity=0.181 Sum_probs=209.0
Q ss_pred CCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCC-CceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEE
Q 002494 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 405 ~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd 483 (915)
..|...-+.++|.|+|.+|++++.||.|++|+.... .... .+..+...|.+++.. +. +|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEee
Confidence 358888999999999999999999999999997765 2222 232366778777764 44 699999999999999
Q ss_pred cCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecC
Q 002494 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (915)
Q Consensus 484 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~ 563 (915)
..++..-..+....-++++++++. +|++++.|+.|-.|++.++.+......+.+|..+|.++.|+|++++||+.+.
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~g--~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-- 158 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVSG--SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-- 158 (933)
T ss_pred CCCCCccceeeeeeccceEEEEec--CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--
Confidence 998876555555667899999965 5589999999999999999999999999999999999999999999998875
Q ss_pred CCCceEEEEECCCCeeEEEecCCC-------CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcc
Q 002494 564 EGESHLVEWNESEGAIKRTYSGFR-------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (915)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~-------~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (915)
+|.+++||+.++.+..++.+-. ...+..++|+|+|..+++.+.|+.|++|+..+.+....+........++
T Consensus 159 --dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 159 --DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred --CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 8889999999998877665422 2256678999999999999999999999999999988887765554689
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 002494 637 RLRFNKEGSLLAVTTSDNGIKILANSD 663 (915)
Q Consensus 637 ~v~~s~~~~~l~s~~~dg~i~iwd~~~ 663 (915)
.++|+|+|+|||+++.||.|.|||.++
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 999999999999999999999999985
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=178.91 Aligned_cols=252 Identities=12% Similarity=0.197 Sum_probs=192.2
Q ss_pred CCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCC-ceeeeEEeecccCCeeEEEEecC--CCeEEEEEEeCCCcEEE
Q 002494 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKV 481 (915)
Q Consensus 405 ~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~--~~~~~l~s~~~d~~i~v 481 (915)
.+|..-|.++.|.+.|+.+|+|+.|++|+|||.+.+. ........+.|.+.|..+.|.+- |+ .+++++.|+++.|
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCceee
Confidence 5688999999999999999999999999999965443 34445567889999999999754 44 8999999999999
Q ss_pred EEcCC------C---eeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCcee------Eec-------C
Q 002494 482 WDVVA------G---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV------DYD-------A 539 (915)
Q Consensus 482 wd~~~------~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~-------~ 539 (915)
|.-.. + ....++....+.|++++|.|..-|-.+++++.||.+|||+.-...... .+. .
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 98521 1 234466677889999999999989999999999999999865433221 111 2
Q ss_pred CCCcEEEEEECCC---CCEEEEEeec-CCCCceEEEEECCCC----eeEEEecCCCCCceEEEEEcCCC----CEEEEEe
Q 002494 540 PGNWCTMMAYSAD---GTRLFSCGTS-KEGESHLVEWNESEG----AIKRTYSGFRKRSLGVVQFDTTR----NRFLAAG 607 (915)
Q Consensus 540 ~~~~i~~~~~sp~---g~~l~~~~~~-~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~sp~~----~~l~s~~ 607 (915)
+..+..|+.|+|. ..+|++++.+ ....+.++||....+ ..+.++.+|.. +|+.++|.|+- ..||+++
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEee
Confidence 3447789999974 3467777642 112346777765433 24556778888 99999999963 4688899
Q ss_pred CCCcEEEEeCCCC--------------------ceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 002494 608 DEFQIKFWDMDNM--------------------NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 608 ~dg~i~iwd~~~~--------------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 662 (915)
.|| |+||.+... +.+..+..| ...|+.+.|+-.|..|++.|+||.|++|...
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H--~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH--NGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC--CCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 999 999998731 122333334 4489999999999999999999999999765
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-21 Score=199.64 Aligned_cols=266 Identities=18% Similarity=0.198 Sum_probs=197.2
Q ss_pred EEEEcC---CCCEEEEEECCCeEEEEEecCCCce---eeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCC
Q 002494 413 RCVWGP---DGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (915)
Q Consensus 413 ~~~~sp---d~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~ 486 (915)
+..|++ ....|+.+.+||.|.++|......- .+......|...|.++.|.| |+. .|++++.|.++++||+.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeecc
Confidence 356665 3457899999999999997653211 12234567999999999999 544 899999999999999999
Q ss_pred CeeEEE--ecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCce---------------------------eEe
Q 002494 487 GRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---------------------------VDY 537 (915)
Q Consensus 487 ~~~~~~--~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------------~~~ 537 (915)
++++.. +.+|...|.++||.+.+ ...|++|+.||.|.|||++..... ...
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred ceeecceeecccccccchhhhccCC-CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 988776 88999999999999974 478999999999999998643310 001
Q ss_pred cCCCCcEEE---EEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEE--------ecCCCC--CceEEEEEcCCCCEEE
Q 002494 538 DAPGNWCTM---MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT--------YSGFRK--RSLGVVQFDTTRNRFL 604 (915)
Q Consensus 538 ~~~~~~i~~---~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~--------~~~~~~--~~v~~~~~sp~~~~l~ 604 (915)
..+...|.+ +.+..|...|++++. .|+.|++||++....... +..+.. ..+.++..+..|.+|+
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga---~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~ 287 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGA---ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLF 287 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccC---CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEE
Confidence 122334444 556688999998875 588999999987543322 222311 1466777778889999
Q ss_pred EEeCCCcEEEEeCCCC--ceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccC
Q 002494 605 AAGDEFQIKFWDMDNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (915)
Q Consensus 605 s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 682 (915)
+.+.|+.|++|++.+. .++..+.++.....-..-..+||+.++++|+.|...++|.+.+.+.....+.||...|..+.
T Consensus 288 AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~ 367 (720)
T KOG0321|consen 288 ASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVR 367 (720)
T ss_pred EEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEe
Confidence 9889999999999863 33444443322111223456899999999999999999999998778888889988877665
Q ss_pred CC
Q 002494 683 SE 684 (915)
Q Consensus 683 ~~ 684 (915)
+.
T Consensus 368 w~ 369 (720)
T KOG0321|consen 368 WL 369 (720)
T ss_pred ec
Confidence 44
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=189.49 Aligned_cols=248 Identities=11% Similarity=0.132 Sum_probs=193.1
Q ss_pred EEEEEcC-------CCCEEEEEECCCeEEEEEecCCCceeeeEE------------------eecccCCeeEEEEecCCC
Q 002494 412 NRCVWGP-------DGLMLGVAFSKHIVHLYTYNPTGELRQHLE------------------IDAHVGGVNDIAFAHPNK 466 (915)
Q Consensus 412 ~~~~~sp-------d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------------------~~~h~~~v~~~~~s~~~~ 466 (915)
.|++|.. -|+++|.|+.|..|.|||+.--..+..... -.+|+..|.+++|+..-+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666643 368999999999999999864332221111 236889999999998888
Q ss_pred eEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEE
Q 002494 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 546 (915)
Q Consensus 467 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 546 (915)
+ +|++||.|.+|++||+.++++..++..|...|.++.|+|. ...++++|+.|+++.+.|.+........-...+.|..
T Consensus 257 n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk 334 (463)
T KOG0270|consen 257 N-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK 334 (463)
T ss_pred e-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence 7 8999999999999999999999999999999999999987 4589999999999999999854333222224557899
Q ss_pred EEECCCCCEEEEEeecCCCCceEEEEECCCC-eeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEE
Q 002494 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLT 624 (915)
Q Consensus 547 ~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~ 624 (915)
++|.|.....+.++. .+|+++-+|++.. +++.+++.|.+ .|.++++++.- .++++++.|+.|++|++.......
T Consensus 335 v~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~ 410 (463)
T KOG0270|consen 335 VAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS 410 (463)
T ss_pred EEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcc
Confidence 999998877766664 3899999999875 89999999999 89999998754 467779999999999997654432
Q ss_pred EEcCCCCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEcCCCc
Q 002494 625 TVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGV 665 (915)
Q Consensus 625 ~~~~~~~~~~v~~v~~s~~~-~~l~s~~~dg~i~iwd~~~~~ 665 (915)
........+...|.++.|+- -.++.|+..+.++|||+.+..
T Consensus 411 v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 411 VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred cccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 22221222245566777753 467788888889999998873
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-20 Score=183.40 Aligned_cols=303 Identities=18% Similarity=0.240 Sum_probs=219.4
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
...+|..+.|.+++...+|+|+.|..|++|.+..++.-... . .......+..|...|+++.|+|+|..||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-~---------~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-M---------KVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-e---------eEEEeecccCCcceeEEEEEcCCcCeee
Confidence 45789999999988757999999999999999876543210 0 1112234788999999999999999999
Q ss_pred EEECCCeEEEEEec--------C-----CCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEE
Q 002494 425 VAFSKHIVHLYTYN--------P-----TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (915)
Q Consensus 425 s~~~dg~i~vwd~~--------~-----~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 491 (915)
+|+.+|.|.+|... + .+.......+.+|...|..++|+|++. ++++++.|..+++||+..|....
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 2 111223346678999999999999999 89999999999999999999999
Q ss_pred EecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEec-------------------CCCC----cEEEEE
Q 002494 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-------------------APGN----WCTMMA 548 (915)
Q Consensus 492 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------~~~~----~i~~~~ 548 (915)
.+..|...+..++|.|.+ +++++-+.|...+.+.+...+...... .|+. -...++
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 999999999999998865 789999988877777655433221110 0111 245678
Q ss_pred ECCCCCEEEEEeecC--CC---CceEEEEECCC-CeeEEEecCCCCCceEEEEEcC------------------CCCEEE
Q 002494 549 YSADGTRLFSCGTSK--EG---ESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDT------------------TRNRFL 604 (915)
Q Consensus 549 ~sp~g~~l~~~~~~~--~~---~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~sp------------------~~~~l~ 604 (915)
|+|||..+++...-- .+ .+..++++-.. .++...+.+... ....+.|+| -+-.++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 999999988654211 01 23345555332 223334444333 333343332 233445
Q ss_pred EEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 605 AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 605 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
.++.+ .|+|||..+..++.....- +...++.++|++||.+++..+.||..-+-.++..
T Consensus 317 iAt~~-svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IATKN-SVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred Eeecc-eEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 55554 7999999998888776542 2338999999999999999999999888887765
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=218.75 Aligned_cols=252 Identities=15% Similarity=0.268 Sum_probs=206.4
Q ss_pred CccCeEEEEEcCCCCE----EEEEECCCeEEEEEecC---CCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcE
Q 002494 407 AAISVNRCVWGPDGLM----LGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~----l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i 479 (915)
.....+.++|.+.|.. ||.|..||.|.+||... +...........|++.|..+.|++...+ ++++|+.||.|
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI 141 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEI 141 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcE
Confidence 4567889999998776 88899999999999765 3333334456789999999999998887 89999999999
Q ss_pred EEEEcCCCeeEEEec--CCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCC--cEEEEEECCCCCE
Q 002494 480 KVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTR 555 (915)
Q Consensus 480 ~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~sp~g~~ 555 (915)
.|||+..-+.-.+.. ...+.|.+++|+.. ..+.|++++.+|.+.|||++..+.+..+..+.. .+..++|+|++..
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 999998755433331 24578999999865 447899999999999999999877776665444 5789999998764
Q ss_pred -EEEEeecCCCCceEEEEECCCC-eeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEEcCCCCC
Q 002494 556 -LFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (915)
Q Consensus 556 -l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (915)
+++++ +.+....|.+||++.. ..++.+++|.. .|.++.|++.+ .++++++.|++|.+|+.++++.+..+...+.
T Consensus 221 ql~~As-~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n- 297 (1049)
T KOG0307|consen 221 QLLVAS-GDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN- 297 (1049)
T ss_pred eeeeec-CCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc-
Confidence 55555 4456889999998853 46777888888 89999999976 7888999999999999999999999988655
Q ss_pred CCcceEEEcCC-CCEEEEEeCCCcEEEEEcCCC
Q 002494 633 PASPRLRFNKE-GSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 633 ~~v~~v~~s~~-~~~l~s~~~dg~i~iwd~~~~ 664 (915)
.+..+.|+|. -..++.++-||.|.|+.+.++
T Consensus 298 -W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 298 -WCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred -ceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 8999999995 458999999999999999876
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-20 Score=191.67 Aligned_cols=291 Identities=13% Similarity=0.191 Sum_probs=219.4
Q ss_pred ccEEEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEE
Q 002494 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (915)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 415 (915)
..+...+. |++.|.|+...|.|. .|++|+.||+|+||.+.+|.++.... ..+.|.|++
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~--------------------~d~~I~~va 448 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ--------------------FDSEIRSVA 448 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--------------------ecceeEEEE
Confidence 34444444 999999999999998 68999999999999999999886421 345799999
Q ss_pred EcCCCC--EEEEEECCCeEEEEEecCC---------------------------------Ccee-eeEEeecccCCeeEE
Q 002494 416 WGPDGL--MLGVAFSKHIVHLYTYNPT---------------------------------GELR-QHLEIDAHVGGVNDI 459 (915)
Q Consensus 416 ~spd~~--~l~s~~~dg~i~vwd~~~~---------------------------------~~~~-~~~~~~~h~~~v~~~ 459 (915)
|+|.+. .||++-... +.|-+..-| .+.. .....-.|...|..+
T Consensus 449 w~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~v 527 (733)
T KOG0650|consen 449 WNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQV 527 (733)
T ss_pred ecCCCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcccee
Confidence 999765 444443332 333332211 0000 001222578899999
Q ss_pred EEecCCCeEEEEEEeC---CCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeE
Q 002494 460 AFAHPNKQLCIVTCGD---DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536 (915)
Q Consensus 460 ~~s~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 536 (915)
.|+..|. ||++... ...|.|+++...+....|+...+.|.++.|+|.. .+++.++ ...|++||+.....+..
T Consensus 528 tWHrkGD--YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~--p~lfVaT-q~~vRiYdL~kqelvKk 602 (733)
T KOG0650|consen 528 TWHRKGD--YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK--PYLFVAT-QRSVRIYDLSKQELVKK 602 (733)
T ss_pred eeecCCc--eEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC--ceEEEEe-ccceEEEehhHHHHHHH
Confidence 9999999 7887654 3578999998877666776677889999999976 4555554 46899999987665556
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCC-eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 002494 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615 (915)
Q Consensus 537 ~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 615 (915)
+......|..++.+|.|..|+.++. ++.+..+|+.-+ ++.+++..|.. .++.++|++.-.+|++|+.||++.|+
T Consensus 603 L~tg~kwiS~msihp~GDnli~gs~----d~k~~WfDldlsskPyk~lr~H~~-avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 603 LLTGSKWISSMSIHPNGDNLILGSY----DKKMCWFDLDLSSKPYKTLRLHEK-AVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred HhcCCeeeeeeeecCCCCeEEEecC----CCeeEEEEcccCcchhHHhhhhhh-hhhhhhhccccceeeeecCCCcEEEE
Confidence 6656668999999999999999886 677988998744 56677777877 89999999999999999999999998
Q ss_pred eCC------CC---ceEEEEcCCCCC--CCcceEEEcCCCCEEEEEeCCCcEEEE
Q 002494 616 DMD------NM---NMLTTVDADGGL--PASPRLRFNKEGSLLAVTTSDNGIKIL 659 (915)
Q Consensus 616 d~~------~~---~~~~~~~~~~~~--~~v~~v~~s~~~~~l~s~~~dg~i~iw 659 (915)
.-. .. -++..+.+|... ..|..+.|+|...+|++++.||+|++|
T Consensus 678 hg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 678 HGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 532 11 244566666432 347788899999999999999999998
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=178.01 Aligned_cols=290 Identities=17% Similarity=0.267 Sum_probs=211.3
Q ss_pred CCCCEEEEEEcC----CCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCC
Q 002494 345 QGSNVMSMDFHP----QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (915)
Q Consensus 345 h~~~V~~v~fsp----d~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 420 (915)
|+..|..++|++ +...++|+.+ ...+.+|.......+. ..+...-.+|......++|+-|.
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcsw~yd~ 101 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCSWSYDS 101 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee--------------eeeeccCCCCCcceEEEEEEecC
Confidence 788999999984 3333555544 5678888876543211 01111123578889999998753
Q ss_pred ----CEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEec--
Q 002494 421 ----LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-- 494 (915)
Q Consensus 421 ----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-- 494 (915)
.++|.|+.-|.|+|.|+.+++... .+.+|...|+.+.|.|+..+ ++++++.|.+|++|++++..++..|-
T Consensus 102 ~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 102 NTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred CCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEeccc
Confidence 478899999999999999987666 67899999999999999988 89999999999999999999998874
Q ss_pred -CCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeE----------------------------ecCCCCcEE
Q 002494 495 -GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD----------------------------YDAPGNWCT 545 (915)
Q Consensus 495 -~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------~~~~~~~i~ 545 (915)
+|.+.|.++.|+.++ .+|++++.|.++++|++...+.... ...|...|-
T Consensus 178 egHrdeVLSvD~~~~g--d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDG--DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccCcEEEEEEcCCC--CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 699999999998855 6999999999999999974321110 011222333
Q ss_pred EEEECCCCCEEEEEeecCCCCceEEEEEC-CCCee-------------EEEecCCCCCceEE--EEEcCCCCEEEEEeCC
Q 002494 546 MMAYSADGTRLFSCGTSKEGESHLVEWNE-SEGAI-------------KRTYSGFRKRSLGV--VQFDTTRNRFLAAGDE 609 (915)
Q Consensus 546 ~~~~sp~g~~l~~~~~~~~~~~~i~~wd~-~~~~~-------------~~~~~~~~~~~v~~--~~~sp~~~~l~s~~~d 609 (915)
|+.|- |.++++-+ .++.|..|.. +-++. +..+.-... .+.- .+|.|-+++||.|...
T Consensus 256 Cvrw~--gd~ilSks----cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 256 CVRWF--GDFILSKS----CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQS 328 (385)
T ss_pred HHHHH--hhheeecc----cCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccCC
Confidence 33332 45666554 3667999987 21211 222332222 3333 4567788999999999
Q ss_pred CcEEEEeCCCCceE--EEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 002494 610 FQIKFWDMDNMNML--TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 610 g~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 662 (915)
|+|++||++...+. .++..+.....|...+|+.||.+|+..++|++|.-||.-
T Consensus 329 g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999976653 333333444579999999999999999999999999854
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-22 Score=208.41 Aligned_cols=253 Identities=16% Similarity=0.248 Sum_probs=213.0
Q ss_pred EEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEE
Q 002494 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (915)
Q Consensus 422 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 501 (915)
.+.....+-.+++|+... +..|...+.++..-..++ .+++|+.|..+.+|.+.....+..+.+|..+|.
T Consensus 6 ~~m~~~~~t~Lr~~~~~~---------~~~hsaav~~lk~~~s~r--~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIe 74 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE---------FVAHSAAVGCLKIRKSSR--SLVTGGEDEKVNLWAIGKPNAITSLTGHESPIE 74 (825)
T ss_pred ccceeeeeeccccccchh---------hhhhhhhhceeeeeccce--eeccCCCceeeccccccCCchhheeeccCCcce
Confidence 334444455566777543 346888888888866666 799999999999999888777888999999999
Q ss_pred EEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEE
Q 002494 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (915)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (915)
++.|++.. .+|++|+.+|+|++||+........+.+|...+.++.|+|-|.+.+.++. +..+.+||.+...+..
T Consensus 75 Sl~f~~~E--~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gSt----dtd~~iwD~Rk~Gc~~ 148 (825)
T KOG0267|consen 75 SLTFDTSE--RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGST----DTDLKIWDIRKKGCSH 148 (825)
T ss_pred eeecCcch--hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccc----cccceehhhhccCcee
Confidence 99998865 68999999999999999988888888999999999999999999988776 4449999999888999
Q ss_pred EecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 002494 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (915)
Q Consensus 582 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 661 (915)
.+.+|.. .+.++.|+|+|++++.+++|..++|||...|+....|..|.+ .+..+.|+|..-++++|+.|+++++||+
T Consensus 149 ~~~s~~~-vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~--~v~sle~hp~e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 149 TYKSHTR-VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG--KVQSLEFHPLEVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred eecCCcc-eeEEEeecCCCceeeccCCcceeeeecccccccccccccccc--cccccccCchhhhhccCCCCceeeeecc
Confidence 9999887 899999999999999999999999999999999999998876 7889999999999999999999999999
Q ss_pred CCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCc
Q 002494 662 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASN 701 (915)
Q Consensus 662 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 701 (915)
++- +.+.........|....+. |+++.+.++..
T Consensus 226 etf-e~I~s~~~~~~~v~~~~fn------~~~~~~~~G~q 258 (825)
T KOG0267|consen 226 ETF-EVISSGKPETDGVRSLAFN------PDGKIVLSGEQ 258 (825)
T ss_pred cee-EEeeccCCccCCceeeeec------CCceeeecCch
Confidence 876 5665555555555555555 66666666554
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=186.79 Aligned_cols=291 Identities=13% Similarity=0.155 Sum_probs=220.9
Q ss_pred eCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEE--EECCCeEEEEEecCCCc-
Q 002494 366 TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV--AFSKHIVHLYTYNPTGE- 442 (915)
Q Consensus 366 s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s--~~~dg~i~vwd~~~~~~- 442 (915)
+....+++||+...+..... . .......+.++.|+.... |++ .+.|..+++|.-.....
T Consensus 9 S~gd~~kl~D~s~~~~~~~~--------------~---~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~ 70 (673)
T KOG4378|consen 9 STGDKTKLSDFSDLETKSEY--------------V---HQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPE 70 (673)
T ss_pred ccCCceEEeecccccCcccc--------------c---cCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCc
Confidence 33568999999876543210 0 011223489999988764 444 45678899997554311
Q ss_pred eeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCe
Q 002494 443 LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522 (915)
Q Consensus 443 ~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~ 522 (915)
+.......+. .-.|++...... ++++|+..+.|+|||++...+.+.+++|.+.|+++.++... .+|++++..|.
T Consensus 71 Vp~~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGd 144 (673)
T KOG4378|consen 71 VPRVRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGD 144 (673)
T ss_pred cceeeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc--ceeEEeccCCc
Confidence 1111122222 334444443444 89999999999999999877888899999999999998754 79999999999
Q ss_pred EEEEecCCCCceeEecCC-CCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCC-
Q 002494 523 IKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR- 600 (915)
Q Consensus 523 i~iwd~~~~~~~~~~~~~-~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~- 600 (915)
|.+..+.++.....+... +..+.-+.|+|..+++++... .+|.|.+||.....++..+...+..+...++|+|..
T Consensus 145 iiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne 221 (673)
T KOG4378|consen 145 IIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNE 221 (673)
T ss_pred EEEEecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCcc
Confidence 999999888777666655 446778999999998876554 288899999998877776654334488899999965
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccc
Q 002494 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (915)
Q Consensus 601 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 680 (915)
..|++.|.|.+|++||....+....+.... +.+.++|+++|.+|+.|...|.|..||+...+.++.++..|...|.+
T Consensus 222 ~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~ 298 (673)
T KOG4378|consen 222 ALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTR 298 (673)
T ss_pred ceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeE
Confidence 567779999999999999877776665433 78999999999999999999999999999988999999999999998
Q ss_pred cCCCCC
Q 002494 681 CPSEPI 686 (915)
Q Consensus 681 ~~~~~~ 686 (915)
++|...
T Consensus 299 vafq~s 304 (673)
T KOG4378|consen 299 VAFQPS 304 (673)
T ss_pred EEeeec
Confidence 877754
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=174.41 Aligned_cols=289 Identities=13% Similarity=0.188 Sum_probs=209.4
Q ss_pred EEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEc-------CCCC
Q 002494 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-------PDGL 421 (915)
Q Consensus 349 V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-------pd~~ 421 (915)
...+.|||||.. +.+-+.|..+.+|++...-.-......+. .+....+-......|...+|- |+..
T Consensus 52 ~kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~~~------~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGPLN------FSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCccc------cccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 456889999985 55678899999999864321110000000 000000011234567777775 6788
Q ss_pred EEEEEECCCeEEEEEecCCCceeeeEEeecccC---CeeEEEEecCCCeEEEEEEeCCCcEEEEEc-CCCee--EEEe--
Q 002494 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-VAGRK--QYTF-- 493 (915)
Q Consensus 422 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~-~~~~~--~~~~-- 493 (915)
++|+.+.+.-|++||.-+|+..... ....|.. ...+++|+|||.+ |+ ++....|+++|+ +.|+. +...
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~DGeq--lf-aGykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSPDGEQ--LF-AGYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccch-hhhhhHHhhhhheeEEecCCCCe--Ee-ecccceEEEeeccCCCCCCcchhhhh
Confidence 9999999999999999998654322 1122333 4568999999994 55 456789999998 44532 1111
Q ss_pred ---cCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEE
Q 002494 494 ---EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (915)
Q Consensus 494 ---~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~ 570 (915)
.+..+.+.+++|+|.. ...++.|+....+-||.-........+.+|.+.|+.+.|.++|+.|++++. .+-.|.
T Consensus 201 ~~k~gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKIL 276 (406)
T ss_pred cccccccceeeeeeccCCC-CcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEE
Confidence 1346778899999974 468999999999999988888888888899999999999999999999885 466799
Q ss_pred EEECCC-CeeEEEecCCCCCceEE--EEEcCCCCEEEEEeCCCcEEEEeCCC-CceEEEEcCCCCCCCcceEEEcCCCCE
Q 002494 571 EWNESE-GAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSL 646 (915)
Q Consensus 571 ~wd~~~-~~~~~~~~~~~~~~v~~--~~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~ 646 (915)
+||++. +.++..+..|.+..-.. ....|++++|++|+.||.|++||+++ +..+..+..+.. .++.++++|.-.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccce
Confidence 999985 44566676665422223 44578999999999999999999998 776777766655 8999999999888
Q ss_pred EEEEeCCC
Q 002494 647 LAVTTSDN 654 (915)
Q Consensus 647 l~s~~~dg 654 (915)
+|+++...
T Consensus 355 latssGqr 362 (406)
T KOG2919|consen 355 LATSSGQR 362 (406)
T ss_pred eeeccCce
Confidence 88887643
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-19 Score=168.29 Aligned_cols=263 Identities=11% Similarity=0.179 Sum_probs=193.3
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC--CCCE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--d~~~ 422 (915)
|.+-|.|+.|.+-|++ +|+|+.|++|+|||..+....- .. ......|.+.|..+.|-+ -|+.
T Consensus 12 h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W-------~~--------Ts~Wrah~~Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTW-------SC--------TSSWRAHDGSIWRVVWAHPEFGQV 75 (361)
T ss_pred CcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCce-------EE--------eeeEEecCCcEEEEEecCccccce
Confidence 7888999999999986 7999999999999975543221 11 111456999999999987 5899
Q ss_pred EEEEECCCeEEEEEecC------CCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeE------
Q 002494 423 LGVAFSKHIVHLYTYNP------TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ------ 490 (915)
Q Consensus 423 l~s~~~dg~i~vwd~~~------~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~------ 490 (915)
+|+++.|+++.||.-.. +..-.....+......|+++.|.|....+.+++++.||.++||+..+.-.+
T Consensus 76 vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq 155 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ 155 (361)
T ss_pred EEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh
Confidence 99999999999997521 112222335566778999999999877768999999999999987653222
Q ss_pred EEec-------CCCCCEEEEEeecCCC-ccEEEEEeCC-----CeEEEEecCCCCc----eeEecCCCCcEEEEEECCCC
Q 002494 491 YTFE-------GHEAPVYSVCPHHKES-IQFIFSTAID-----GKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADG 553 (915)
Q Consensus 491 ~~~~-------~~~~~v~~i~~~~~~~-~~~l~s~~~d-----g~i~iwd~~~~~~----~~~~~~~~~~i~~~~~sp~g 553 (915)
..+. .+..+..|+.|++..- ..+|+.|+.+ +.+.||....... ...+..+..+|++++|.|+-
T Consensus 156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 156 HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred hhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence 2222 3667778888886542 2467777765 4788897765542 23556788899999999963
Q ss_pred ----CEEEEEeecCCCCceEEEEECCCC--------------------eeEEEecCCCCCceEEEEEcCCCCEEEEEeCC
Q 002494 554 ----TRLFSCGTSKEGESHLVEWNESEG--------------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (915)
Q Consensus 554 ----~~l~~~~~~~~~~~~i~~wd~~~~--------------------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d 609 (915)
..|++++ +|| |+||.++.. +.+..+.+|.+ .|..+.|+-.|..|++.|.|
T Consensus 236 Gr~y~~lAvA~----kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdD 309 (361)
T KOG2445|consen 236 GRSYHLLAVAT----KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGDD 309 (361)
T ss_pred CCceeeEEEee----cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCCC
Confidence 3466665 366 999998731 23455777877 89999999999999999999
Q ss_pred CcEEEEeCCCC---ceEEEEcCC
Q 002494 610 FQIKFWDMDNM---NMLTTVDAD 629 (915)
Q Consensus 610 g~i~iwd~~~~---~~~~~~~~~ 629 (915)
|.|++|...-. ++...+...
T Consensus 310 G~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 310 GCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred ceeeehhhhhhhhheeeeEEecc
Confidence 99999987532 344444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=188.41 Aligned_cols=269 Identities=10% Similarity=0.129 Sum_probs=208.6
Q ss_pred CCCcceeecCCCCCceeeec------CCCcccEEEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceeccc
Q 002494 313 GQSDEVSFAGVAHTPNVYSQ------DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHK 385 (915)
Q Consensus 313 ~~~~~~~~s~~g~~~~~~~~------d~~~~~~~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~ 385 (915)
+.|.+++|.|||..+.+... |...|..+++++ |++.|+|++||.||+ .+|+|+.|..|.+|+-+-...++
T Consensus 13 hci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG~Lk-- 89 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEGILK-- 89 (1081)
T ss_pred cchheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCc-eeccCCCceeEEEecccccceee--
Confidence 36788999999999877654 445889999999 999999999999998 68999999999999876543332
Q ss_pred ceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCC
Q 002494 386 PFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN 465 (915)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 465 (915)
..|...|.|+.|+|-...|++++-+ ..-+|..+.....+. .....+.+++|..||
T Consensus 90 -------------------YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~-----kss~R~~~CsWtnDG 144 (1081)
T KOG1538|consen 90 -------------------YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH-----KSSSRIICCSWTNDG 144 (1081)
T ss_pred -------------------eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh-----hhheeEEEeeecCCC
Confidence 3599999999999999999998764 456887765332221 224578999999999
Q ss_pred CeEEEEEEeCCCcEEEEEcCCCeeEEEec---CCCCCEEEEEeecCCC---ccEEEEEeCCCeEEEEecCCCCceeEecC
Q 002494 466 KQLCIVTCGDDKMIKVWDVVAGRKQYTFE---GHEAPVYSVCPHHKES---IQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539 (915)
Q Consensus 466 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~i~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 539 (915)
+ +++.|-.+|+|.+-+ .+++....+. +..++|++++|+|... ...+++.....++.++.+.. +.+-.-..
T Consensus 145 q--ylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~ 220 (1081)
T KOG1538|consen 145 Q--YLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRA 220 (1081)
T ss_pred c--EEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeeccccc
Confidence 9 899999999999987 5555544443 4778999999998642 25778888888888887653 22221122
Q ss_pred CCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 002494 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (915)
Q Consensus 540 ~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 619 (915)
-+....|+.+.++|.+++.|+. ++.+.+|- +.|-.+.++-... ..|..++..|++++++.|+.||+|-.|++..
T Consensus 221 L~FdP~CisYf~NGEy~LiGGs----dk~L~~fT-R~GvrLGTvg~~D-~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 221 LNFDPCCISYFTNGEYILLGGS----DKQLSLFT-RDGVRLGTVGEQD-SWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CCCCchhheeccCCcEEEEccC----CCceEEEe-ecCeEEeeccccc-eeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 2334578999999999999986 66688886 4476666665533 4999999999999999999999999999854
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=176.94 Aligned_cols=267 Identities=13% Similarity=0.211 Sum_probs=190.8
Q ss_pred cccEEEEecCCCCEEEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCc-eecccceeeeecccCcccccccccCCCccCeEE
Q 002494 336 TKTVVRTLNQGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRE-RLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (915)
Q Consensus 336 ~~~~~~~l~h~~~V~~v~fspd~~-~ll~~gs~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 413 (915)
+.-......|.+.++-+.-++-++ .++|+=+..|.|.||++...- .+....+.+-+ +...+...+.+|...=+.
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 334455566888888888887653 356666788999999986421 11111111101 112223346789999999
Q ss_pred EEEcCCC-CEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC---ee
Q 002494 414 CVWGPDG-LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RK 489 (915)
Q Consensus 414 ~~~spd~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~---~~ 489 (915)
++|||-. ..|++|..-+.|++|...+|.-......+.+|+..|-.++|||.... +|++||.||+|+|||++.+ .+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 9999932 35788888899999999886544333467789999999999999888 8999999999999999987 34
Q ss_pred EEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCC---ceeEecCCCCcEEEEEECCCCCEEEEEeecCCCC
Q 002494 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG---SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (915)
Q Consensus 490 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~ 566 (915)
+.+ +.|.+.|+.|.|+... .+|++|+.||+++|||++..+ .+..+..|..+|+++.|+|....++.++. .|
T Consensus 296 ~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D 369 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---ED 369 (440)
T ss_pred eEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CC
Confidence 443 7899999999998654 489999999999999998653 45578889999999999997654443332 38
Q ss_pred ceEEEEECCCCe-------------------eEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEe
Q 002494 567 SHLVEWNESEGA-------------------IKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWD 616 (915)
Q Consensus 567 ~~i~~wd~~~~~-------------------~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd 616 (915)
.+|.+||+.--. ++....+.. .+..+.|+++- .++++.+.|| +.||.
T Consensus 370 ~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk--e~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 370 NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK--EVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh--HhhhheeccCCCCeEEEecccc-eeEEE
Confidence 889999985211 111122222 56778898854 4677777887 44543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-20 Score=208.10 Aligned_cols=304 Identities=13% Similarity=0.159 Sum_probs=225.8
Q ss_pred ceeecCCCcchhhhccccCCCcceeecCCCCCceeeecCCCc----ccEEEEecCCCCEEEEEEcCCCCe---EEEEEeC
Q 002494 295 GMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLT----KTVVRTLNQGSNVMSMDFHPQQQT---ILLVGTN 367 (915)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~d~~~----~~~~~~l~h~~~V~~v~fspd~~~---ll~~gs~ 367 (915)
.+.|+... ..++......+..+..||.+.. +.++..|... -+.+..+....+.+.++|.+.|.. ++|.|..
T Consensus 11 ~~awSp~~-~~~laagt~aq~~D~sfst~~s-lEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 11 TFAWSPAS-PPLLAAGTAAQQFDASFSTSAS-LEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred eEEecCCC-chhhHHHhhhhccccccccccc-cceeeecccCccccccccccccccccceeeeecccCCCccceeecccc
Confidence 55777655 3344444445555666755553 3333333222 245666777889999999998875 6899999
Q ss_pred CCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCC-EEEEEECCCeEEEEEecCCCceeee
Q 002494 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQH 446 (915)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~ 446 (915)
||.|.+||...- +.... .-.......|.+.|..+.|++... +||+|+.||.|.|||++..+.....
T Consensus 89 dG~I~ly~p~~~--~~~~~-----------~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~ 155 (1049)
T KOG0307|consen 89 DGNIVLYDPASI--IANAS-----------EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP 155 (1049)
T ss_pred CCceEEecchhh--ccCcc-----------hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC
Confidence 999999998752 11000 001112467999999999999655 9999999999999999875433211
Q ss_pred EEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCC--CEEEEEeecCCCccEEEEEeCC-C--
Q 002494 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA--PVYSVCPHHKESIQFIFSTAID-G-- 521 (915)
Q Consensus 447 ~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~l~s~~~d-g-- 521 (915)
. -......|.+++|+..-.+ +|++++.+|.+.|||++..+.+..+..+.. .+..+.|+|+.. ..+++++.| +
T Consensus 156 ~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a-Tql~~As~dd~~P 232 (1049)
T KOG0307|consen 156 G-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA-TQLLVASGDDSAP 232 (1049)
T ss_pred C-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc-eeeeeecCCCCCc
Confidence 1 1124568999999988877 899999999999999999988887776654 467899999865 455555554 3
Q ss_pred eEEEEecCCCCcee-EecCCCCcEEEEEECCCC-CEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCC
Q 002494 522 KIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (915)
Q Consensus 522 ~i~iwd~~~~~~~~-~~~~~~~~i~~~~~sp~g-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~ 599 (915)
.|.+||++...... .+..|...|.++.|++.+ .++++++. |+.|.+|+.++|+.+..+....+ .+..+.|+|.
T Consensus 233 viqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr 307 (1049)
T KOG0307|consen 233 VIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPR 307 (1049)
T ss_pred eeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEecCCCceEeeecCCCCc-ceeeeeecCC
Confidence 49999998766544 556899999999999977 66777764 78899999999999999988555 8999999997
Q ss_pred CC-EEEEEeCCCcEEEEeCCCCc
Q 002494 600 RN-RFLAAGDEFQIKFWDMDNMN 621 (915)
Q Consensus 600 ~~-~l~s~~~dg~i~iwd~~~~~ 621 (915)
.. .+++++-||.|.||.+....
T Consensus 308 ~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 308 NPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CcchhhhheeccceeeeeeecCC
Confidence 76 67778999999999997643
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-17 Score=181.99 Aligned_cols=368 Identities=24% Similarity=0.408 Sum_probs=265.7
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCc-eecccceeeeecccCcccccccccCCCc-cCeEEEEE-cCC
Q 002494 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVW-GPD 419 (915)
Q Consensus 343 l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-spd 419 (915)
..|...+.++.|.+.+. .++.++.|+.+.+|+...+. .... +..+. ..+..+.+ +++
T Consensus 62 ~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 121 (466)
T COG2319 62 RGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSSPD 121 (466)
T ss_pred eeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEECCC
Confidence 34888999999999998 56777789999999998875 2221 12222 36677777 888
Q ss_pred CC-EEEEEEC-CCeEEEEEecC-CCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeC-CCcEEEEEcCCCeeEEEecC
Q 002494 420 GL-MLGVAFS-KHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYTFEG 495 (915)
Q Consensus 420 ~~-~l~s~~~-dg~i~vwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~ 495 (915)
+. .++..+. |+.+.+|+... ..... .+..|...|..++|+|++. ++++++. |+.+++|++..+..+..+.+
T Consensus 122 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T COG2319 122 GNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLAG 196 (466)
T ss_pred cceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeecc
Confidence 88 5555444 89999999987 33333 6778999999999999998 6777775 99999999999888999999
Q ss_pred CCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCcee-EecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEEC
Q 002494 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (915)
Q Consensus 496 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~ 574 (915)
|...|.+++|+|.+. ..+++++.|+.+++||........ .+..+.... ...|+|++..+++++. ++.+++|+.
T Consensus 197 ~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~~~~ 270 (466)
T COG2319 197 HTDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRLWDL 270 (466)
T ss_pred CCCceEEEEEcCCcc-eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEEeee
Confidence 999999999996542 255555999999999888555555 466666554 3389999987776653 778999999
Q ss_pred CCCee-EEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEc--CCCCCCCcceEEEcCCCCEEEEE-
Q 002494 575 SEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD--ADGGLPASPRLRFNKEGSLLAVT- 650 (915)
Q Consensus 575 ~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~s~- 650 (915)
..... +..+.+|.. .+.++.|+|++..+++++.|+.+.+||..+........ .+.. .+..+.|.+++..++.+
T Consensus 271 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 347 (466)
T COG2319 271 RSSSSLLRTLSGHSS-SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSLLVSGG 347 (466)
T ss_pred cCCCcEEEEEecCCc-cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCEEEEee
Confidence 86664 444555644 89999999988889888888899999998887776665 4443 68889884343566666
Q ss_pred eCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCc
Q 002494 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (915)
Q Consensus 651 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 730 (915)
..|+.+.+|+..... .......... +. ..
T Consensus 348 ~~d~~~~~~~~~~~~-~~~~~~~~~~-~~-------------------------------------------------~~ 376 (466)
T COG2319 348 SDDGTIRLWDLRTGK-PLKTLEGHSN-VL-------------------------------------------------SV 376 (466)
T ss_pred cCCCcEEeeecCCCc-eeEEecCCce-EE-------------------------------------------------EE
Confidence 678999999998773 1222111110 00 01
Q ss_pred eeccCCceeec--cCCCceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEeeccceeEEeeccc
Q 002494 731 SRLVDVKPRVA--EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (915)
Q Consensus 731 ~~s~dg~~la~--~~~~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~ 803 (915)
.+++ ...+.. ..++.+.+|+... ..... .... +...+....+++++..+++++.++.+++|+...
T Consensus 377 ~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 377 SFSP-DGRVVSSGSTDGTVRLWDLST----GSLLR-NLDG--HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EECC-CCCEEEEecCCCceEEEeccc----Ceeee-eccC--CCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 2223 212222 3338999999874 11111 1111 116899999999999999999999999997655
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-19 Score=174.96 Aligned_cols=248 Identities=17% Similarity=0.270 Sum_probs=191.6
Q ss_pred CCCccCeEEEEEcCCC--CEEEEEECCCeEEEEEecCC-------------CceeeeEEeecccCCeeEEEEecCCCeEE
Q 002494 405 NDAAISVNRCVWGPDG--LMLGVAFSKHIVHLYTYNPT-------------GELRQHLEIDAHVGGVNDIAFAHPNKQLC 469 (915)
Q Consensus 405 ~~~~~~v~~~~~spd~--~~l~s~~~dg~i~vwd~~~~-------------~~~~~~~~~~~h~~~v~~~~~s~~~~~~~ 469 (915)
-.|.+.++-+.-++-+ .+.|+-+..|.|.||++... ...+..+.+.+|.+.=..++|||-... .
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g-~ 226 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG-R 226 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-c
Confidence 4577778887777754 45566678899999997531 122445577899999999999994443 5
Q ss_pred EEEEeCCCcEEEEEcCCCeeE---EEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCc--eeEecCCCCcE
Q 002494 470 IVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWC 544 (915)
Q Consensus 470 l~s~~~d~~i~vwd~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i 544 (915)
+++|..-+.|++|...+|.-. ..+.+|...|-.++|+|..+ ..|++||.||+|+|||++.+.. -.....|...|
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV 305 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV 305 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence 889988899999998887643 35667999999999999866 5999999999999999998732 23447788899
Q ss_pred EEEEECCCCCEEEEEeecCCCCceEEEEECCC---CeeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC
Q 002494 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNM 620 (915)
Q Consensus 545 ~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~ 620 (915)
+.++|+.+-.+|++|+. +|++++||++. ++++..|+-|.. +|+++.|+|.. ..|+++|.|.+|.|||+.-.
T Consensus 306 NVISWnr~~~lLasG~D----dGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGD----DGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eeEEccCCcceeeecCC----CceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 99999998888888763 88999999975 668889999988 99999999954 56778889999999998632
Q ss_pred c----------------eEEEEcCCCCCCCcceEEEcCC-CCEEEEEeCCCcEEEEE
Q 002494 621 N----------------MLTTVDADGGLPASPRLRFNKE-GSLLAVTTSDNGIKILA 660 (915)
Q Consensus 621 ~----------------~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~~dg~i~iwd 660 (915)
. +.+.+-.|.+...+..+.|++. ..++++.+.|| +.||.
T Consensus 381 ~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 381 ADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 1 1112334545557888999984 45777777787 55554
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-19 Score=171.29 Aligned_cols=336 Identities=16% Similarity=0.218 Sum_probs=225.6
Q ss_pred ccCCCccCeEEEEEcC-----CCCEEEEEECCCeEEEEEecCCCceeeeEEe--ecccCCeeEEEEecCCC--eEEEEEE
Q 002494 403 LLNDAAISVNRCVWGP-----DGLMLGVAFSKHIVHLYTYNPTGELRQHLEI--DAHVGGVNDIAFAHPNK--QLCIVTC 473 (915)
Q Consensus 403 ~~~~~~~~v~~~~~sp-----d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~--~~~l~s~ 473 (915)
+..+|..+|..++|++ .-..+|+++. ..+.+|.......++....+ ..|......++|+-+.. ..+++.|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3567889999999986 2335555554 57889988765533322222 23667788889975432 2388999
Q ss_pred eCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEec---CCCCcEEEEEEC
Q 002494 474 GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYS 550 (915)
Q Consensus 474 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s 550 (915)
+.-|.|+|.|+.++++...+.+|...|+.+.++|... ++++++|.|..|++|++++..++..+. +|...|.++.|+
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCC-cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 9999999999999999999999999999999999844 799999999999999999999888764 577799999999
Q ss_pred CCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCC
Q 002494 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630 (915)
Q Consensus 551 p~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (915)
++|.++++++. |.++++|++...+....++. +..|+|++...-.-. -+..+.+.. +...|
T Consensus 191 ~~gd~i~ScGm----Dhslk~W~l~~~~f~~~lE~-------s~~~~~~~t~~pfpt--~~~~fp~fs------t~diH- 250 (385)
T KOG1034|consen 191 LDGDRIASCGM----DHSLKLWRLNVKEFKNKLEL-------SITYSPNKTTRPFPT--PKTHFPDFS------TTDIH- 250 (385)
T ss_pred CCCCeeeccCC----cceEEEEecChhHHhhhhhh-------hcccCCCCccCcCCc--ccccccccc------ccccc-
Confidence 99999999986 77899999985443222221 244666654311000 012222222 11223
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcc
Q 002494 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (915)
Q Consensus 631 ~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 710 (915)
...|-++.|- |+++++-+-++.|..|....-.+.+..........+ ++.... =+.-
T Consensus 251 -rnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~T---------------i~~~~~------~~~c 306 (385)
T KOG1034|consen 251 -RNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATT---------------ILGEFD------YPMC 306 (385)
T ss_pred -cchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCcccee---------------eeeEec------cCcc
Confidence 3377788887 689999999999999987322122211211111100 000000 0001
Q ss_pred cCCCCCCCCcccccccCCCceeccCCceeeccCC-CceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEE
Q 002494 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLA 789 (915)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~ 789 (915)
.+|- ...+|.+-.++||.+.. |+|.+||++....+ .+..+.- +.....|...+||.||..|+.
T Consensus 307 ~iWf-------------irf~~d~~~~~la~gnq~g~v~vwdL~~~ep~-~~ttl~~--s~~~~tVRQ~sfS~dgs~lv~ 370 (385)
T KOG1034|consen 307 DIWF-------------IRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP-KCTTLTH--SKSGSTVRQTSFSRDGSILVL 370 (385)
T ss_pred ceEE-------------EEEeecHHHHHHhhccCCCcEEEEECCCCCCc-cCceEEe--ccccceeeeeeecccCcEEEE
Confidence 1111 12345566789999988 99999999864433 2222221 124567999999999999999
Q ss_pred eeccceeEEee
Q 002494 790 LASNAVHKLWK 800 (915)
Q Consensus 790 ~~~dg~v~iW~ 800 (915)
..+|++|-=||
T Consensus 371 vcdd~~Vwrwd 381 (385)
T KOG1034|consen 371 VCDDGTVWRWD 381 (385)
T ss_pred EeCCCcEEEEE
Confidence 99999965554
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-19 Score=179.55 Aligned_cols=295 Identities=12% Similarity=0.122 Sum_probs=215.0
Q ss_pred eecCCCCCceeeecCCCcccE-EEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcc
Q 002494 319 SFAGVAHTPNVYSQDDLTKTV-VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM 397 (915)
Q Consensus 319 ~~s~~g~~~~~~~~d~~~~~~-~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 397 (915)
.+...|..+.+|.....+... +......-.+.++.|+......+++.+.|..+++|.-... .. ++.+
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~--~Vp~-------- 73 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TP--EVPR-------- 73 (673)
T ss_pred eeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC--CC--ccce--------
Confidence 344456666666655543332 2222233459999999887433344456778888864432 11 1110
Q ss_pred cccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCC
Q 002494 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (915)
Q Consensus 398 ~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~ 477 (915)
... .. ...-.|++......|+++|+..+.|+|||+......+ .+.+|...|+++.++-.+. +|++++..|
T Consensus 74 --~~k-~~--gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr---~lkdh~stvt~v~YN~~De--yiAsvs~gG 143 (673)
T KOG4378|consen 74 --VRK-LT--GDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR---FLKDHQSTVTYVDYNNTDE--YIASVSDGG 143 (673)
T ss_pred --eec-cc--cchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh---hccCCcceeEEEEecCCcc--eeEEeccCC
Confidence 000 11 1233455555555899999999999999999643333 6779999999999998887 899999999
Q ss_pred cEEEEEcCCCeeEEEecCC-CCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEe-cCCCCcEEEEEECCCCCE
Q 002494 478 MIKVWDVVAGRKQYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTR 555 (915)
Q Consensus 478 ~i~vwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~sp~g~~ 555 (915)
.|.|..+.++.....|... ...|.-+.+++... .+|.+++.+|.|.+||+........+ ..|..+...++|+|....
T Consensus 144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr-~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~ 222 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKR-FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEA 222 (673)
T ss_pred cEEEEecccCccccceecCCCCeEEEeecccccc-eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccc
Confidence 9999999998877777644 34556788988754 67889999999999999876665543 457788999999997654
Q ss_pred -EEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEEEEcCCCCCC
Q 002494 556 -LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLP 633 (915)
Q Consensus 556 -l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~ 633 (915)
+++.+. |..|.+||.+..+....+.... +...++|+++|.+|++|...|.|+.||++. ..++..+..|..
T Consensus 223 l~vsVG~----Dkki~~yD~~s~~s~~~l~y~~--Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~-- 294 (673)
T KOG4378|consen 223 LLVSVGY----DKKINIYDIRSQASTDRLTYSH--PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA-- 294 (673)
T ss_pred eEEEecc----cceEEEeecccccccceeeecC--CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc--
Confidence 556665 7779999999877766665443 789999999999999999999999999985 467788877766
Q ss_pred CcceEEEcCCC
Q 002494 634 ASPRLRFNKEG 644 (915)
Q Consensus 634 ~v~~v~~s~~~ 644 (915)
.|++++|-|..
T Consensus 295 sVt~vafq~s~ 305 (673)
T KOG4378|consen 295 SVTRVAFQPSP 305 (673)
T ss_pred ceeEEEeeecc
Confidence 79999998865
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-19 Score=176.98 Aligned_cols=297 Identities=14% Similarity=0.151 Sum_probs=210.6
Q ss_pred EeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC----eeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeE
Q 002494 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (915)
Q Consensus 448 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i 523 (915)
....+...|++++|+|..+.-++++|+.-|.|-+||+.+. ..+..+..|..+|.++.|+|.+. ..+++.+.||+|
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-s~i~ssSyDGti 259 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-SQIYSSSYDGTI 259 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-hheeeeccCcee
Confidence 4456788999999999887438999999999999999532 23567788999999999999865 689999999999
Q ss_pred EEEecCCCCceeEecC--CCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCee-EEEecCCCCCceEEEEEcCCC
Q 002494 524 KAWLYDYLGSRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTR 600 (915)
Q Consensus 524 ~iwd~~~~~~~~~~~~--~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~sp~~ 600 (915)
++-|++.......+.. ....+.++.|+.+...++.+.. -|.+.+||.+++.. ...+..|.. .|+.++++|..
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~----~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~ 334 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN----VGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPVC 334 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec----ccceEEEEeecCCccchhhhhhhc-ccceeecCCCC
Confidence 9999987654443333 4457788889888777777653 45789999998665 556667777 89999999976
Q ss_pred C-EEEEEeCCCcEEEEeCCCCceEE--EEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC---CCceeeeeccCC
Q 002494 601 N-RFLAAGDEFQIKFWDMDNMNMLT--TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS---DGVRLLRMLEGR 674 (915)
Q Consensus 601 ~-~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~ 674 (915)
. +|+++|.|++.+|||++.-.... .+..-.+...|.+..|||++-.|++.+.|..|+|||.. ...++...+. |
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-H 413 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-H 413 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-c
Confidence 5 57789999999999998643222 23333344489999999987779999999999999984 2212222222 2
Q ss_pred CCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCC-CceeEeecC
Q 002494 675 AMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIP 753 (915)
Q Consensus 675 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~~ 753 (915)
+.. .++++ .....+|-||..+++++.. ..|-|+|-.
T Consensus 414 n~~--------------t~Rwl-----------------------------T~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 414 NNR--------------TGRWL-----------------------------TPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred cCc--------------ccccc-----------------------------cchhheeCCCccEEEEeccCcceeEEcCC
Confidence 211 11111 1123467788888888888 889999866
Q ss_pred CCCCccceeEeecCCccCCCceEE-EEEecCCceEEEee-ccceeEEee
Q 002494 754 DISDPSQIKALRLPDSIAASKVVR-LIYTNSGLSLLALA-SNAVHKLWK 800 (915)
Q Consensus 754 ~~~~~~~~~~~~~~~~~h~~~I~~-l~~s~d~~~l~~~~-~dg~v~iW~ 800 (915)
. +.....+-.|. ...|.+ ..|+|-+..+++|+ ..|.|+||.
T Consensus 451 ~---~q~v~el~~P~---~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 451 G---GQMVCELHDPE---SSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred C---CEEeeeccCcc---ccccccceeecccccceeccCCccceEEEEe
Confidence 3 33232222221 223444 45899777455554 478888884
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-16 Score=180.21 Aligned_cols=368 Identities=21% Similarity=0.355 Sum_probs=269.1
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCC-ceeeeEEeeccc-CCeeEEEE-ecCCCeEEEEE-EeCCCcE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHV-GGVNDIAF-AHPNKQLCIVT-CGDDKMI 479 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~h~-~~v~~~~~-s~~~~~~~l~s-~~~d~~i 479 (915)
...|...+.++.+.+++..++.++.|+.+.+|+...+. ... .+..+. ..+..+.+ ++++.. +++. +..|+.+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~ 136 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTV 136 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcce-EEeccCCCCccE
Confidence 35688999999999999999999999999999998875 333 344433 36777777 777773 3444 4459999
Q ss_pred EEEEcCC-CeeEEEecCCCCCEEEEEeecCCCccEEEEEeC-CCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEE
Q 002494 480 KVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (915)
Q Consensus 480 ~vwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 557 (915)
.+||... ......+..|...|..++|+++. ..+++++. |+.+++|+.........+..|...+.+++|+|++..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence 9999887 77888888999999999999865 47888875 99999999998777777777889999999999998444
Q ss_pred EE-eecCCCCceEEEEECCCCeeEE-EecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-EEEEcCCCCCCC
Q 002494 558 SC-GTSKEGESHLVEWNESEGAIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPA 634 (915)
Q Consensus 558 ~~-~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 634 (915)
.+ + .++.+++||...+..+. .+.+|.. .. ...|+|++..+++++.|+.+++|+...... +..+..| ...
T Consensus 215 ~~~~----~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~ 286 (466)
T COG2319 215 ASGS----SDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSS 286 (466)
T ss_pred EEec----CCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC--Ccc
Confidence 43 3 37779999999888887 6888776 43 338999998899999999999999987664 4444334 348
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeecc--CCCCcccccCCCCCCCCCCceeeecccCccccccCCcccC
Q 002494 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE--GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLER 712 (915)
Q Consensus 635 v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 712 (915)
+.++.|+|++..+++++.|+.+.+|+..+.. ...... .|...+..+
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------------------------- 334 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSSLTLKGHEGPVSSL------------------------------- 334 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEEeeecccCCceEEE-------------------------------
Confidence 9999999988988889999999999888773 333332 333211111
Q ss_pred CCCCCCCcccccccCCCceeccCCceeecc--CCCceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEE-
Q 002494 713 PDRGPPAVSISSLGTIDGSRLVDVKPRVAE--DVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLA- 789 (915)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~s~dg~~la~~--~~~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~- 789 (915)
.+.+++..++.+ .++.+.+|++.... ... ... ....+..+.+++ ....+.
T Consensus 335 ------------------~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~--~~~---~~~~~~~~~~~~-~~~~~~~ 387 (466)
T COG2319 335 ------------------SFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLK--TLE---GHSNVLSVSFSP-DGRVVSS 387 (466)
T ss_pred ------------------EECCCCCEEEEeecCCCcEEeeecCCCc---eeE--Eec---CCceEEEEEECC-CCCEEEE
Confidence 121222233333 33778889887532 111 111 122288999988 543444
Q ss_pred eeccceeEEeecccccCCCCCCccccccceeecCCCCCceeccCCCCCCCCCceeEEEEecCCCeEEEec-CCeeEEeec
Q 002494 790 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM 868 (915)
Q Consensus 790 ~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~I~~l~~S~dg~~L~s~s-d~~v~vw~l 868 (915)
+..++.+.+|+...... ... ... + ...+....+++++.++++++ ++.+++|++
T Consensus 388 ~~~~~~~~~~~~~~~~~----------------------~~~-~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 388 GSTDGTVRLWDLSTGSL----------------------LRN-LDG--H-TSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441 (466)
T ss_pred ecCCCceEEEecccCee----------------------eee-ccC--C-CCcEEEEEECCCCcEEEEecCCCcEEEEec
Confidence 57789999997765321 111 121 1 26888999999999999977 999999999
Q ss_pred cC
Q 002494 869 MT 870 (915)
Q Consensus 869 ~t 870 (915)
.+
T Consensus 442 ~~ 443 (466)
T COG2319 442 KT 443 (466)
T ss_pred cC
Confidence 98
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.3e-19 Score=184.02 Aligned_cols=273 Identities=13% Similarity=0.147 Sum_probs=201.1
Q ss_pred CEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEE
Q 002494 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (915)
Q Consensus 348 ~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~ 427 (915)
.|..++|-|||..+++.+ +..+.+||...|..+.. +++|...|+|++|+.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 899999999998766544 67899999999988765 789999999999999999999999
Q ss_pred CCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeec
Q 002494 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (915)
Q Consensus 428 ~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 507 (915)
.|..|.+|+-.-...++ ..|.+.|.|+.|+|-.. .+++++-. ..-+|...... +...+ ...++.+++|
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhh-HHhhh-hheeEEEeee--
Confidence 99999999866533332 26999999999999988 58887753 46688755432 22211 2334555555
Q ss_pred CCCccEEEEEeCCCeEEEEecCCCCceeEecC---CCCcEEEEEECCCCC-----EEEEEeecCCCCceEEEEECCCCee
Q 002494 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTMMAYSADGT-----RLFSCGTSKEGESHLVEWNESEGAI 579 (915)
Q Consensus 508 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~sp~g~-----~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (915)
..+|++++.|-.||+|.+-+-. ++....+.. ...+|.+++|+|... .+++... ..++..+.+. |+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-cee
Confidence 5577999999999999987643 334344433 556999999999643 3333322 2234444443 444
Q ss_pred EEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 002494 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (915)
Q Consensus 580 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw 659 (915)
+..-+.-.- ...|+.+.++|.+++.||.|+.+.+|..+ |-.+.++....+ .|++++..|++++++.|+.||+|--|
T Consensus 215 Igk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 215 IGKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred ecccccCCC-CchhheeccCCcEEEEccCCCceEEEeec-CeEEeeccccce--eEEEEEEccCCceEEEEEccCeeehh
Confidence 332222111 45678899999999999999999999765 555555544444 89999999999999999999999999
Q ss_pred EcCC
Q 002494 660 ANSD 663 (915)
Q Consensus 660 d~~~ 663 (915)
++..
T Consensus 291 Nl~f 294 (1081)
T KOG1538|consen 291 NLIF 294 (1081)
T ss_pred hhHH
Confidence 8754
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=169.31 Aligned_cols=247 Identities=15% Similarity=0.217 Sum_probs=188.9
Q ss_pred CeEEEEEcC-----CCCEEEEE---ECCCeEEEEEec-CCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEE
Q 002494 410 SVNRCVWGP-----DGLMLGVA---FSKHIVHLYTYN-PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (915)
Q Consensus 410 ~v~~~~~sp-----d~~~l~s~---~~dg~i~vwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~ 480 (915)
.|+..+|.. +.+++|.. +..|...+.-+. +|+.-.....+.+|+++|.+++|+|-+.+ .+++||.|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 344555543 45566542 233344444433 23332333345689999999999998887 899999999999
Q ss_pred EEEcCCC-------eeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCC
Q 002494 481 VWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG 553 (915)
Q Consensus 481 vwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g 553 (915)
||.+..+ +++..+.+|...|.-+.|+|... +.|++++.|.+|.+||+.++.....+. |...|.+++|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 9998754 45678889999999999999855 789999999999999999999988887 88999999999999
Q ss_pred CEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe----CCCcEEEEeCCCCceEEEEcCC
Q 002494 554 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMNMLTTVDAD 629 (915)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~ 629 (915)
.++++++. |..|++||.++++.+..-.+|.+..-..+.|-.+|. +++.| .+.++-+||..+-+.-..+..-
T Consensus 186 s~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~el 260 (472)
T KOG0303|consen 186 SLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQEL 260 (472)
T ss_pred ceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEe
Confidence 99999885 677999999999999988888876666677888888 55543 5788999998765433222222
Q ss_pred CCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCC
Q 002494 630 GGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (915)
Q Consensus 630 ~~~~~v~~v~~s~~~~~l~s~~-~dg~i~iwd~~~~ 664 (915)
.....|.-.-|.+|.++++.++ .|+.|+-|.+.+.
T Consensus 261 DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 261 DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 2222566667889888887666 5999999999876
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-18 Score=164.68 Aligned_cols=384 Identities=8% Similarity=0.070 Sum_probs=243.9
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEE
Q 002494 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (915)
Q Consensus 413 ~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 492 (915)
-+.|||+|+++|+++.- .+.|-|.++-+... +..--+.|..+.|..|... .+.....++.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q----lf~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ----LFLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHH----HHHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 36799999999999876 66677776643322 1112346888999988875 566678899999999999998889
Q ss_pred ecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEE
Q 002494 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (915)
Q Consensus 493 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~w 572 (915)
+.....++.+++|+|++. .++.+...|-.|.+|.+.+...... ......+..++|+|||++.+.++.- |-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecc-cHHHHHHHH
Confidence 988899999999999753 5777888899999999987665443 3344566899999999999887641 111122222
Q ss_pred ECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEE
Q 002494 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (915)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~ 650 (915)
.-.....++.+..... ..+.+.|+|||+.+++-. -+-.|+.|.... .+..++|+|.+++|++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~~l--------------G~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYERGL--------------GLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeeecc--------------ceeEEEeccccceEEee
Confidence 2223344555655554 678899999999887633 233333332211 46789999999999999
Q ss_pred eCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCC---CCCC--ceeeecccCccccccCCcccCCCCC-------CC
Q 002494 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS---SKPL--TINALGPASNVSAAIAPTLERPDRG-------PP 718 (915)
Q Consensus 651 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~-------~~ 718 (915)
+.|+.++|.+--+- +.+..+ .|...+......... ..++ ....+..... +.....|... ..
T Consensus 229 syD~~lrvlnh~tW-k~f~ef-lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~-----~~~a~~~~~se~~YE~~~~ 301 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTW-KPFGEF-LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT-----DLEAHIWEESETIYEQQMT 301 (447)
T ss_pred ccchhhhhhceeee-eehhhh-ccchhccCchhhhhhhhhcchhhhcccccccCCC-----ccccCccccchhhhhhhhc
Confidence 99999998775544 222222 111111110000000 0000 0000000000 0001111111 11
Q ss_pred Ccccc------c----ccC-CCceeccCCceeeccCC---CceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCC
Q 002494 719 AVSIS------S----LGT-IDGSRLVDVKPRVAEDV---DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG 784 (915)
Q Consensus 719 ~~~~~------~----~~~-~~~~~s~dg~~la~~~~---~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~ 784 (915)
+...+ . ..+ .-.+||+|..++|+-.+ +-+.+||+.. ..+.. +.- ...+|....|.|..
T Consensus 302 pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~----l~l~a--vLi--Qk~piraf~WdP~~ 373 (447)
T KOG4497|consen 302 PVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN----LKLHA--VLI--QKHPIRAFEWDPGR 373 (447)
T ss_pred ceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh----hhhhh--hhh--hccceeEEEeCCCC
Confidence 11111 1 112 45789999999999988 7789999984 22221 111 56789999999999
Q ss_pred ceEEEeeccceeEEeecccccCCCCCCccccccceeecCCCCCceeccCCCCCCCCCceeEEEEecCCCeEEEec-CCe
Q 002494 785 LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGK 862 (915)
Q Consensus 785 ~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~I~~l~~S~dg~~L~s~s-d~~ 862 (915)
..|+.+.....+++|.... ...+. .++ . ...|..+.|.-+|..++..+ |..
T Consensus 374 prL~vctg~srLY~W~psg----------------------~~~V~--vP~--~-GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 374 PRLVVCTGKSRLYFWAPSG----------------------PRVVG--VPK--K-GFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceEEEEcCCceEEEEcCCC----------------------ceEEe--cCC--C-CceeeeEEecCCCcEEEEEcCCce
Confidence 9998888777888884322 11122 222 2 56888999999999999998 554
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9e-18 Score=165.74 Aligned_cols=235 Identities=15% Similarity=0.241 Sum_probs=185.0
Q ss_pred cccCCCccCeEEEEEcC-CCCEEEEEECCCeEEEEEecCCCce----eeeEEeecccCCeeEEEEecCCCeEEEEEEeCC
Q 002494 402 ALLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (915)
Q Consensus 402 ~~~~~~~~~v~~~~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d 476 (915)
..+.+|.++|..++|+| +...+|+||.|.+|.||.+..+... .....+.+|...|--++|+|...+ +|++++.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~D 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSD 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCC
Confidence 34688999999999999 6778999999999999998765432 334478899999999999999888 89999999
Q ss_pred CcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCC-cEEEEEECCCCCE
Q 002494 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTR 555 (915)
Q Consensus 477 ~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~sp~g~~ 555 (915)
.+|.+||+.+|+.+.++. |.+.|.+++|+. +|.++++++.|..||+||.++++.+..-..|.+ .-..+.|-.+|.
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK- 229 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence 999999999999988887 999999999977 558999999999999999999887776655544 556677888998
Q ss_pred EEEEeecCCCCceEEEEECCCCe---eEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCce-EEEEcCCC
Q 002494 556 LFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM-LTTVDADG 630 (915)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~-~~~~~~~~ 630 (915)
+++.+.++-.+.++-+||..+-+ ....+.... .|.---|.|+.+.++.+| .|+.|+-|.+.+..+ +.-+....
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~ 307 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS 307 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEeccCC--ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccc
Confidence 77777777778999999976533 334444433 466566889988887755 799999999987653 23333222
Q ss_pred CCCCcceEEEcCC
Q 002494 631 GLPASPRLRFNKE 643 (915)
Q Consensus 631 ~~~~v~~v~~s~~ 643 (915)
...+-..+.|-|.
T Consensus 308 S~epQRG~g~mPK 320 (472)
T KOG0303|consen 308 SKEPQRGMGFMPK 320 (472)
T ss_pred cCCcccccccccc
Confidence 2224456777663
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=167.61 Aligned_cols=291 Identities=13% Similarity=0.161 Sum_probs=203.1
Q ss_pred EEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEec--CCC-CcEE
Q 002494 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APG-NWCT 545 (915)
Q Consensus 469 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~-~~i~ 545 (915)
.++++...|.|++||..+++.+..++++...++.+.|.....++.+.+|+.||+|++||++.......+. .+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 6888888999999999999999999999999999999875456789999999999999999876654433 222 3667
Q ss_pred EEEECCCCCEEEEEeecCCCCceEEEEECCCCee-EEEec-CCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCc-
Q 002494 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYS-GFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN- 621 (915)
Q Consensus 546 ~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~-~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~- 621 (915)
+++.+..++.+++++.-...+-.+.+||++..+. ++.+. .|.+ .|+++.|+|.. +.|++|+.||-|.+||++...
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC-cceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7777777888887765444577899999998766 55554 5555 89999999954 688999999999999997542
Q ss_pred ---eEEEEcCCCCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeec
Q 002494 622 ---MLTTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 697 (915)
Q Consensus 622 ---~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 697 (915)
++.++. ++ ..|..+.|..++ +.|.+-+..++..+|+++.+. ....+.... +... +.+
T Consensus 201 eDaL~~viN-~~--sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~--~~~~----------d~r--- 261 (376)
T KOG1188|consen 201 EDALLHVIN-HG--SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-EETWLENPD--VSAD----------DLR--- 261 (376)
T ss_pred hhhHHHhhc-cc--ceeeeeeeecCCcceEEEEEccCceeEEEccCCC-hhhcccCcc--chhh----------hHH---
Confidence 222222 22 268899999876 458888889999999999884 222221110 0000 000
Q ss_pred ccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeec-cCC-CceeEeecCCCCCccceeEeecCCccCCCce
Q 002494 698 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA-EDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKV 775 (915)
Q Consensus 698 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~-~~~-~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I 775 (915)
..|... .+ .+.....++...+. +++ ++..++.+.....+.........+.+|..-|
T Consensus 262 -------------~~~~~d-------Y~--I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiV 319 (376)
T KOG1188|consen 262 -------------KEDNCD-------YV--INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIV 319 (376)
T ss_pred -------------hhhhhh-------he--eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHH
Confidence 000000 00 00011122333333 333 7788877765344444444444444577889
Q ss_pred EEEEEecCCceEEEeeccceeEEeec
Q 002494 776 VRLIYTNSGLSLLALASNAVHKLWKW 801 (915)
Q Consensus 776 ~~l~~s~d~~~l~~~~~dg~v~iW~l 801 (915)
+++.|...+..+.+||.||.+.+|..
T Consensus 320 R~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 320 RDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HHHhhhcccceeeccCCCceEEEEec
Confidence 99999988898999999999999985
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-18 Score=172.45 Aligned_cols=262 Identities=11% Similarity=0.146 Sum_probs=189.1
Q ss_pred CCEEEEEEcCC-------CCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCc------ccccccccCCCccCeEE
Q 002494 347 SNVMSMDFHPQ-------QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAAS------MPLQNALLNDAAISVNR 413 (915)
Q Consensus 347 ~~V~~v~fspd-------~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~ 413 (915)
.-..|++|... |+ ++|.|+.|..|.|||+.=...+. ....+.... .........+|+..|..
T Consensus 174 afPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~ 248 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLA 248 (463)
T ss_pred CcchhhhhhhcCCCCCCCcc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHH
Confidence 44466666432 44 68999999999999986322111 001111000 00011123579999999
Q ss_pred EEEcCC-CCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeE-E
Q 002494 414 CVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-Y 491 (915)
Q Consensus 414 ~~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~-~ 491 (915)
++|+.+ .+.||+||.|.+|++||+.++++.. .+..|.+.|.++.|+|.... ++++|+.|++|.+.|.+..... .
T Consensus 249 Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 249 LSWNRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred HHhccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCc
Confidence 999886 4588999999999999999998765 56679999999999999888 8999999999999999853222 2
Q ss_pred EecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCC-CceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEE
Q 002494 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (915)
Q Consensus 492 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~ 570 (915)
.++ ..+.|-.+.|.+... ..++++..||+++-+|++.. +.+..+..|..+|.++++++.-..+++.+. .++.++
T Consensus 325 ~wk-~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vk 399 (463)
T KOG0270|consen 325 EWK-FDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVK 399 (463)
T ss_pred eEE-eccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEE
Confidence 222 456788999998754 68888999999999999987 566788999999999999987665544332 488899
Q ss_pred EEECCCCee--EEEecCCCCCceEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCceE
Q 002494 571 EWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNR-FLAAGDEFQIKFWDMDNMNML 623 (915)
Q Consensus 571 ~wd~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~iwd~~~~~~~ 623 (915)
+|++..-.. +..-.-.-+ ...|.++.|+-.+ ++.||..+.++|||+.+...+
T Consensus 400 lw~~~~~~~~~v~~~~~~~~-rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 400 LWKFDVDSPKSVKEHSFKLG-RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEeecCCCCccccccccccc-ceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999864433 222111112 4677788887654 556788888999999876554
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-16 Score=171.66 Aligned_cols=424 Identities=12% Similarity=0.123 Sum_probs=258.4
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCC---CEEEEE
Q 002494 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG---LMLGVA 426 (915)
Q Consensus 350 ~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~---~~l~s~ 426 (915)
....||+|+++++.+ .+..|.||...+|+++.. +.+|..++..+.+.|.. .++.++
T Consensus 20 ~~avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~~-------------------l~~~~a~l~s~~~~~~~~~~~~~~~~ 78 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLC--TGNFVKVYSTATGECITS-------------------LEDHTAPLTSVIVLPSSENANYLIVC 78 (792)
T ss_pred cccccccCCcEEEEe--eCCEEEEEecchHhhhhh-------------------cccccCccceeeecCCCccceEEEEE
Confidence 344699999965543 478999999999998864 67899999999998854 467799
Q ss_pred ECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEec----CCCeEEEEEEeCCC------------cEEEEEcCCC--e
Q 002494 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH----PNKQLCIVTCGDDK------------MIKVWDVVAG--R 488 (915)
Q Consensus 427 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~----~~~~~~l~s~~~d~------------~i~vwd~~~~--~ 488 (915)
+.+|.|++||...+..++. +.. ..++..+.+.| ... .+..+..|. +++-+.+.+- .
T Consensus 79 sl~G~I~vwd~~~~~Llkt---~~~-~~~v~~~~~~~~~a~~s~--~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~ 152 (792)
T KOG1963|consen 79 SLDGTIRVWDWSDGELLKT---FDN-NLPVHALVYKPAQADISA--NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSA 152 (792)
T ss_pred ecCccEEEecCCCcEEEEE---Eec-CCceeEEEechhHhCccc--eeEeecccceeeeecccccccceeeeEeeecccc
Confidence 9999999999998876652 221 22333333321 111 111111111 1111111110 0
Q ss_pred eEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCcee----EecCCCCcEEEEEECCCCCEEEEEeecCC
Q 002494 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (915)
Q Consensus 489 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~sp~g~~l~~~~~~~~ 564 (915)
....+..|.. -.++..++.+ .+.....+..+.+|+........ .-..|...+++.++||++++++++..
T Consensus 153 ~~d~~~~~~~-~~~I~~~~~g---e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~--- 225 (792)
T KOG1963|consen 153 KGDFLKEHQE-PKSIVDNNSG---EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDS--- 225 (792)
T ss_pred chhhhhhhcC-CccEEEcCCc---eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEecc---
Confidence 0111112222 2345555443 34444456678888877654211 11124445899999999999998864
Q ss_pred CCceEEEEECCC----CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEE
Q 002494 565 GESHLVEWNESE----GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (915)
Q Consensus 565 ~~~~i~~wd~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 640 (915)
+|.|.+|.--. ......+.-|.. .|++++|+++|.+|++||..|.+.+|.+.+++ ..-++--+. +|..+.+
T Consensus 226 -dGrI~vw~d~~~~~~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs--~I~~i~v 300 (792)
T KOG1963|consen 226 -DGRILVWRDFGSSDDSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGS--PILHIVV 300 (792)
T ss_pred -CCcEEEEeccccccccccceEEEeccc-ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCC--eeEEEEE
Confidence 77899997432 123455666777 89999999999999999999999999999987 333333333 8999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCc
Q 002494 641 NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720 (915)
Q Consensus 641 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 720 (915)
|||+.+.+....|+.|++....+. +...++.|-........ ...+-+.
T Consensus 301 S~ds~~~sl~~~DNqI~li~~~dl-~~k~tIsgi~~~~~~~k--------~~~~~l~----------------------- 348 (792)
T KOG1963|consen 301 SPDSDLYSLVLEDNQIHLIKASDL-EIKSTISGIKPPTPSTK--------TRPQSLT----------------------- 348 (792)
T ss_pred cCCCCeEEEEecCceEEEEeccch-hhhhhccCccCCCcccc--------ccccccc-----------------------
Confidence 999999999999999999998877 44455544332111000 0000010
Q ss_pred ccccccCCCceeccCCceeeccCC-CceeEeecCCCCCccceeEeecC---Cc-cCCCceEEEEEecCCceEEEeec---
Q 002494 721 SISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP---DS-IAASKVVRLIYTNSGLSLLALAS--- 792 (915)
Q Consensus 721 ~~~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~~~~~~~~~~~~~~~~---~~-~h~~~I~~l~~s~d~~~l~~~~~--- 792 (915)
....+.|-.+.++..+. +.|.+||+-+...-..++..... |. -+.-.++.++.+-.|.+++|+-.
T Consensus 349 -------t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d 421 (792)
T KOG1963|consen 349 -------TGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARID 421 (792)
T ss_pred -------eeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeeh
Confidence 12244454445555555 99999998764433333322211 11 13345788888888998887653
Q ss_pred -----cc--eeEEeecccccCCCCCCccccccceeecCCCCCceeccCCCCCCCCCceeEEEEecCC-C-eEEEec-CCe
Q 002494 793 -----NA--VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND-S-YVMSAS-GGK 862 (915)
Q Consensus 793 -----dg--~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~I~~l~~S~dg-~-~L~s~s-d~~ 862 (915)
|| .+|+|..+.+.. +-.+....... | ...+.+.+|.+-- . ..+|+| ||.
T Consensus 422 ~~~~~~~e~~LKFW~~n~~~k------------------t~~L~T~I~~P--H-~~~~vat~~~~~~rs~~~vta~~dg~ 480 (792)
T KOG1963|consen 422 KFNFFDGEVSLKFWQYNPNSK------------------TFILNTKINNP--H-GNAFVATIFLNPTRSVRCVTASVDGD 480 (792)
T ss_pred hhhccCceEEEEEEEEcCCcc------------------eeEEEEEEecC--C-CceeEEEEEecCcccceeEEeccCCe
Confidence 22 234443332110 00122221222 5 6666566655432 2 688998 999
Q ss_pred eEEeeccCCC
Q 002494 863 VSLFNMMTFK 872 (915)
Q Consensus 863 v~vw~l~t~k 872 (915)
+++|-+.+.+
T Consensus 481 ~KiW~~~~~~ 490 (792)
T KOG1963|consen 481 FKIWVFTDDS 490 (792)
T ss_pred EEEEEEeccc
Confidence 9999995544
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-17 Score=158.34 Aligned_cols=269 Identities=16% Similarity=0.235 Sum_probs=196.8
Q ss_pred ceeecCCCCCceeeecCCC---------------------cccEEEEecCCCCEEEEEEc-------CCCCeEEEEEeCC
Q 002494 317 EVSFAGVAHTPNVYSQDDL---------------------TKTVVRTLNQGSNVMSMDFH-------PQQQTILLVGTNV 368 (915)
Q Consensus 317 ~~~~s~~g~~~~~~~~d~~---------------------~~~~~~~l~h~~~V~~v~fs-------pd~~~ll~~gs~d 368 (915)
...|||||..+.+.+.|.. +............|...+|- |+.. ++|+.+.+
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~-l~a~ssr~ 132 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN-LFAVSSRD 132 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc-eeeecccc
Confidence 4678888888766655441 12223333466778888885 6676 67888899
Q ss_pred CcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEe-cCCCceeeeE
Q 002494 369 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY-NPTGELRQHL 447 (915)
Q Consensus 369 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~-~~~~~~~~~~ 447 (915)
.-|.+||.-+|+...+. +.+|. ...-....+++|+|||.+|.+|. ...|+++|+ +.|.......
T Consensus 133 ~PIh~wdaftG~lraSy--~~ydh------------~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASY--RAYDH------------QDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred Cceeeeeccccccccch--hhhhh------------HHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchh
Confidence 99999999999877542 22211 11123456899999999998764 579999999 4443322111
Q ss_pred Ee----ecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeC-CCe
Q 002494 448 EI----DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGK 522 (915)
Q Consensus 448 ~~----~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~ 522 (915)
.+ .+..+-+.+++|+|.... .++.|+....+-||.-..+.++..+-+|.+.|+.++|.+++ +.|++|+. |-.
T Consensus 198 t~~~~k~gq~giisc~a~sP~~~~-~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG--n~lfsGaRk~dk 274 (406)
T KOG2919|consen 198 TVTKGKFGQKGIISCFAFSPMDSK-TLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG--NKLFSGARKDDK 274 (406)
T ss_pred hhhcccccccceeeeeeccCCCCc-ceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc--CeecccccCCCe
Confidence 11 134678999999998876 79999999999999988888999999999999999998865 67888776 778
Q ss_pred EEEEecCCCCcee-EecCCCC---cEEEEEECCCCCEEEEEeecCCCCceEEEEECCC-CeeEEEecCCCCCceEEEEEc
Q 002494 523 IKAWLYDYLGSRV-DYDAPGN---WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFD 597 (915)
Q Consensus 523 i~iwd~~~~~~~~-~~~~~~~---~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s 597 (915)
|..||++....++ .+..|.. .-.-....|+|++|++++. +|.|++||+++ |..+..+..+.. .++.++++
T Consensus 275 Il~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t----dG~V~vwdlk~~gn~~sv~~~~sd-~vNgvsln 349 (406)
T KOG2919|consen 275 ILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT----DGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSLN 349 (406)
T ss_pred EEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC----CccEEEEecCCCCCcccccccccc-cccceecC
Confidence 9999998765443 3333322 2223455799999998864 78899999998 777777777777 89999999
Q ss_pred CCCCEEEEEeCC
Q 002494 598 TTRNRFLAAGDE 609 (915)
Q Consensus 598 p~~~~l~s~~~d 609 (915)
|--..+++++..
T Consensus 350 P~mpilatssGq 361 (406)
T KOG2919|consen 350 PIMPILATSSGQ 361 (406)
T ss_pred cccceeeeccCc
Confidence 998878777654
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-17 Score=165.18 Aligned_cols=331 Identities=14% Similarity=0.204 Sum_probs=214.5
Q ss_pred CccCeEEEEEcCCCC-EEEEEECCCeEEEEEecCCC------ceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcE
Q 002494 407 AAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTG------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (915)
Q Consensus 407 ~~~~v~~~~~spd~~-~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i 479 (915)
...+|.++.|.+++. .|++|+.|..|++|.++.+. .+.....+..|...|+++.|+|+|. ++++|+.+|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v 89 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEV 89 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceE
Confidence 345799999999877 99999999999999887543 2344446778999999999999999 89999999999
Q ss_pred EEEEcC--------C--------CeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCc
Q 002494 480 KVWDVV--------A--------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW 543 (915)
Q Consensus 480 ~vwd~~--------~--------~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 543 (915)
.+|-.. + -.....+.+|...|..++|++++ .++++++.|..+++||+..+........|...
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~--~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y 167 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS--NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY 167 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC--ceeeeeeccceEEEEEeccceeEeeccccccc
Confidence 999765 2 12344667899999999999865 79999999999999999999999999999999
Q ss_pred EEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE
Q 002494 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (915)
Q Consensus 544 i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 623 (915)
+..++|.|-++++++-+.++ ..+.+.+...+.+..... . ....-++.+. .....+++.=++.
T Consensus 168 vqgvawDpl~qyv~s~s~dr----~~~~~~~~~~~~~~~~~~--~-~m~~~~~~~~--------e~~s~rLfhDeTl--- 229 (434)
T KOG1009|consen 168 VQGVAWDPLNQYVASKSSDR----HPEGFSAKLKQVIKRHGL--D-IMPAKAFNER--------EGKSTRLFHDETL--- 229 (434)
T ss_pred cceeecchhhhhhhhhccCc----ccceeeeeeeeeeeeeee--e-EeeecccCCC--------CcceeeeeecCch---
Confidence 99999999999999877533 344444332222111110 0 0111111111 1112333332221
Q ss_pred EEEcCCCCCCCcceEEEcCCCCEEEEEeC----CCcE-----EEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCcee
Q 002494 624 TTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGI-----KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694 (915)
Q Consensus 624 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~~----dg~i-----~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 694 (915)
..-...++|+|||.++++.+. .+.+ ++++-..-+++...+.+.......+.+.+. --
T Consensus 230 --------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pV------y~ 295 (434)
T KOG1009|consen 230 --------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPV------YY 295 (434)
T ss_pred --------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeee------EE
Confidence 113456899999999988643 2222 333322222222222222221111111100 00
Q ss_pred eecccCccccccCCcccCCCCCCCCcccccccCCC-ceeccCCceeeccCCCceeEeecCCCCCccceeEeecCCccCCC
Q 002494 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTID-GSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS 773 (915)
Q Consensus 695 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~s~dg~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~h~~ 773 (915)
. ...+.... ....|-+-.+|+++.+.|.|||... +..+-..++.|-.
T Consensus 296 e--------------------------lrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~------~~P~~~v~nihy~ 343 (434)
T KOG1009|consen 296 E--------------------------LRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQT------LEPLAVVDNIHYS 343 (434)
T ss_pred E--------------------------eccccccccccccccceEEEEeecceEEEecccc------ccceEEEeeeeee
Confidence 0 00000001 1223555667788889999999764 2223333455889
Q ss_pred ceEEEEEecCCceEEEeeccceeEEeeccccc
Q 002494 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTE 805 (915)
Q Consensus 774 ~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~ 805 (915)
.|+.++||+||..|+..+.||..-+-.+...+
T Consensus 344 ~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 344 AITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred eecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 99999999999999999999987766655543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-17 Score=166.40 Aligned_cols=208 Identities=16% Similarity=0.173 Sum_probs=158.7
Q ss_pred EEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCC
Q 002494 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT 440 (915)
Q Consensus 361 ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~ 440 (915)
.++.+++||.+.+.+-.. +... ....|.+.|.|-.|+|||.-|++++.||.|++|.-.+.
T Consensus 77 ~~~i~s~DGkf~il~k~~-rVE~-------------------sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM 136 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA-RVER-------------------SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM 136 (737)
T ss_pred eEEEEcCCceEEEecccc-hhhh-------------------hhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch
Confidence 466778899999887443 2221 14679999999999999999999999999999985442
Q ss_pred CceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCC
Q 002494 441 GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID 520 (915)
Q Consensus 441 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d 520 (915)
++. .+.....+|.|++|.|+... .+++.+ +.+.|=-+.....+-.++.|++-|.++.|++.. +++++|+.|
T Consensus 137 --LRS--tl~Q~~~~v~c~~W~p~S~~-vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s--~lI~sgGED 207 (737)
T KOG1524|consen 137 --LRS--TVVQNEESIRCARWAPNSNS-IVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS--NIIASGGED 207 (737)
T ss_pred --HHH--HHhhcCceeEEEEECCCCCc-eEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccc--cceeecCCc
Confidence 121 23345668999999999987 455443 567776666666777889999999999999865 699999999
Q ss_pred CeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCC
Q 002494 521 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (915)
Q Consensus 521 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~ 600 (915)
-..++||.. +.....-..|..+|++++|+|+ +.++.++. ++++ +.....+.|..++||+||
T Consensus 208 ~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-----nt~R------------~~~p~~GSifnlsWS~DG 268 (737)
T KOG1524|consen 208 FRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-----NTAR------------FSSPRVGSIFNLSWSADG 268 (737)
T ss_pred eeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-----eeee------------ecCCCccceEEEEEcCCC
Confidence 999999964 4555566678889999999999 55555542 2232 333333489999999999
Q ss_pred CEEEEEeCCCcEEEEe
Q 002494 601 NRFLAAGDEFQIKFWD 616 (915)
Q Consensus 601 ~~l~s~~~dg~i~iwd 616 (915)
..+++|...|.+.+=.
T Consensus 269 TQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 269 TQATCGTSTGQLIVAY 284 (737)
T ss_pred ceeeccccCceEEEee
Confidence 9999999988876543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-17 Score=161.56 Aligned_cols=292 Identities=11% Similarity=0.129 Sum_probs=212.6
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccc-cCCCccCeEEEEEcCCCC
Q 002494 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL-LNDAAISVNRCVWGPDGL 421 (915)
Q Consensus 343 l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~spd~~ 421 (915)
+.|.+.|+++.||.+++ +|++|+.|..+++|++..--..+. +.+..+ -..|...|.|++|....+
T Consensus 53 ~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~-------------~KPI~~~~~~H~SNIF~L~F~~~N~ 118 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKT-------------PKPIGVMEHPHRSNIFSLEFDLENR 118 (609)
T ss_pred hhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcC-------------CCCceeccCccccceEEEEEccCCe
Confidence 45899999999999997 689999999999999864322211 011111 134668999999999999
Q ss_pred EEEEEECCCeEEEEEecCCCceeeeEEeeccc---CCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCe-e--EEEecC
Q 002494 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV---GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-K--QYTFEG 495 (915)
Q Consensus 422 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~-~--~~~~~~ 495 (915)
.+.+|+.+++|...|+++.+.+. ...|. +.|..+..+|..+ .|++.+.++.|.+||.+... . ......
T Consensus 119 ~~~SG~~~~~VI~HDiEt~qsi~----V~~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQSIY----VANENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred eEecCCCcceeEeeecccceeee----eecccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecC
Confidence 99999999999999999976554 22344 4899999999977 79999999999999988654 2 222333
Q ss_pred CCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeE-------ecCCCCcEEEEEECCCCCEEEEEeecCCCCce
Q 002494 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (915)
Q Consensus 496 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~ 568 (915)
.......+.|+|... .+|++.+..+-+.+||.+....... +........++.|+|+|+.+++.-. ...
T Consensus 193 ~~~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~ 267 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKC 267 (609)
T ss_pred CCccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCC
Confidence 556677888998754 6899999999999999987654331 1111223467889999999887643 222
Q ss_pred EEEEECCCCee-EEEecCCC-C----CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----------------------
Q 002494 569 LVEWNESEGAI-KRTYSGFR-K----RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM---------------------- 620 (915)
Q Consensus 569 i~~wd~~~~~~-~~~~~~~~-~----~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---------------------- 620 (915)
-.+||+-+.++ +.++.... + ..+.+++|..+. .+++|+.+-.|++|.+...
T Consensus 268 P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i 346 (609)
T KOG4227|consen 268 PLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFI 346 (609)
T ss_pred CEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhhee
Confidence 44678776443 33333111 1 145567776554 4899999999999988521
Q ss_pred -ceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 002494 621 -NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 621 -~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 662 (915)
+.+..+.+|.. .++.+.|+|...+|++.+-.+.+++|.-.
T Consensus 347 ~~~~~VLrGHRS--v~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 347 EKELTVLRGHRS--VPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cceeEEEecccc--cccceeecCCcceEeccchhhheeccccc
Confidence 12344556654 78999999999999999999999999754
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-16 Score=151.46 Aligned_cols=291 Identities=15% Similarity=0.256 Sum_probs=209.8
Q ss_pred cEEEEecCCCCEEEEEEc--CCCCeEEEEEeC----CCcEEEEEcC--CCceecccceeeeecccCcccccccccCCCcc
Q 002494 338 TVVRTLNQGSNVMSMDFH--PQQQTILLVGTN----VGDISLWEVG--SRERLAHKPFKVWDISAASMPLQNALLNDAAI 409 (915)
Q Consensus 338 ~~~~~l~h~~~V~~v~fs--pd~~~ll~~gs~----dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (915)
+.+..+...-.++++.|| |+.++.+|.|+. .+.|.|..+. +++.+... -..|.-
T Consensus 36 ~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a------------------~fd~~Y 97 (364)
T KOG0290|consen 36 KEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA------------------NFDHPY 97 (364)
T ss_pred ceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC------------------CCCCCC
Confidence 445666667789999999 566667888873 3455555443 33333221 145889
Q ss_pred CeEEEEEcCCCC-----EEEEEECCCeEEEEEecCCC-ceeeeEE-----eecccCCeeEEEEecCCCeEEEEEEeCCCc
Q 002494 410 SVNRCVWGPDGL-----MLGVAFSKHIVHLYTYNPTG-ELRQHLE-----IDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (915)
Q Consensus 410 ~v~~~~~spd~~-----~l~s~~~dg~i~vwd~~~~~-~~~~~~~-----~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~ 478 (915)
+++.+.|.|+.. +||+++ ..+++|.+.... .+..... -..+..++++..|+.-..+ ++.+++-|-+
T Consensus 98 P~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTT 174 (364)
T KOG0290|consen 98 PVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTT 174 (364)
T ss_pred CccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCe
Confidence 999999999863 556554 479999987422 1111111 1245678999999987777 8999999999
Q ss_pred EEEEEcCCCe---eEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeE-ecCC--CCcEEEEEECCC
Q 002494 479 IKVWDVVAGR---KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAP--GNWCTMMAYSAD 552 (915)
Q Consensus 479 i~vwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~--~~~i~~~~~sp~ 552 (915)
..|||++++. ....+-+|+..|..++|... .-+.+++.+.||.+|+||++....... +... ..+...++|+++
T Consensus 175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq 253 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ 253 (364)
T ss_pred EEEEEEeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC
Confidence 9999999873 35567789999999999874 347999999999999999998765443 3322 347788899874
Q ss_pred -CCEEEEEeecCCCCceEEEEECCCC-eeEEEecCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCc------eE
Q 002494 553 -GTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTT-RNRFLAAGDEFQIKFWDMDNMN------ML 623 (915)
Q Consensus 553 -g~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~~------~~ 623 (915)
-+++|+...+ ...|.+.|++.. .++..+++|.. .|+.++|.|. ...++++|+|..+.|||+...- ++
T Consensus 254 DpnymATf~~d---S~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 254 DPNYMATFAMD---SNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred CchHHhhhhcC---CceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence 4566666542 445889999864 56888999998 8999999995 4688999999999999997532 22
Q ss_pred EEEcCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEE
Q 002494 624 TTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (915)
Q Consensus 624 ~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i~i 658 (915)
..+. ....|+.+.|++ .+.+|+.+.. +.+.+
T Consensus 330 lay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 330 LAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 2222 223799999997 6778887765 33443
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=174.01 Aligned_cols=299 Identities=17% Similarity=0.253 Sum_probs=234.5
Q ss_pred EEEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEc
Q 002494 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (915)
Q Consensus 339 ~~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 417 (915)
+...|. |.+.|..|.|+..|. ++++|+.|..|.+||+..+...... ..+|...|....|-
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f------------------~SGH~~NvfQaKFi 194 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSF------------------ESGHCNNVFQAKFI 194 (559)
T ss_pred hhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCccccc------------------ccccccchhhhhcc
Confidence 344555 999999999999998 7999999999999999988765431 36788888888898
Q ss_pred C--CCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEe--
Q 002494 418 P--DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-- 493 (915)
Q Consensus 418 p--d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-- 493 (915)
| +...+++++.||.|++=.+...+.+.....+..|.++|..++.-|+..+ -|.+++.|+.+.-.|++++.....+
T Consensus 195 P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~c 273 (559)
T KOG1334|consen 195 PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVC 273 (559)
T ss_pred CCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeee
Confidence 8 4568999999999999887665555555567789999999999999988 7999999999999999887543333
Q ss_pred -cCCCC---CEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCce------eEe------cCCCCcEEEEEECCCCCEEE
Q 002494 494 -EGHEA---PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR------VDY------DAPGNWCTMMAYSADGTRLF 557 (915)
Q Consensus 494 -~~~~~---~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~------~~~~~~i~~~~~sp~g~~l~ 557 (915)
+.+.. ...+++.+|... ..+++++.|..+++||.+..... ..+ ......|++++|+.++.-++
T Consensus 274 r~~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL 352 (559)
T KOG1334|consen 274 READEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELL 352 (559)
T ss_pred eccCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcccee
Confidence 22333 567888888754 58999999999999998654322 111 12233799999998777666
Q ss_pred EEeecCCCCceEEEEECCC--C----------eeEEE-ecCCCCC-ceEEEE-EcCCCCEEEEEeCCCcEEEEeCCCCce
Q 002494 558 SCGTSKEGESHLVEWNESE--G----------AIKRT-YSGFRKR-SLGVVQ-FDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (915)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~--~----------~~~~~-~~~~~~~-~v~~~~-~sp~~~~l~s~~~dg~i~iwd~~~~~~ 622 (915)
++.. +-.|+++.-.. | ..+.. |+||.+. .|..+- |.|...++++|++=|.|.||+-.+++.
T Consensus 353 aSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 353 ASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred eeec----ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH
Confidence 6554 55588885432 2 22333 8888764 455553 578889999999999999999999999
Q ss_pred EEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 623 ~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
+..+.+..+ .|+|+.=+|--.+||++|-|..|+||...+.
T Consensus 429 i~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 429 IRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 999988877 8999999999999999999999999987544
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-17 Score=159.00 Aligned_cols=274 Identities=11% Similarity=0.146 Sum_probs=194.2
Q ss_pred EEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC--CCCEEEEEECCCeEEEEEec
Q 002494 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGVAFSKHIVHLYTYN 438 (915)
Q Consensus 361 ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--d~~~l~s~~~dg~i~vwd~~ 438 (915)
.+|++.++|.|++||..+++.+.. ++++...++.++|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 578888999999999999887754 567888888889887 46788999999999999999
Q ss_pred CCCceeeeEEeeccc-CCeeEEEEecCCCeEEEEEEe----CCCcEEEEEcCCCee-EEE-ecCCCCCEEEEEeecCCCc
Q 002494 439 PTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG----DDKMIKVWDVVAGRK-QYT-FEGHEAPVYSVCPHHKESI 511 (915)
Q Consensus 439 ~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~~l~s~~----~d~~i~vwd~~~~~~-~~~-~~~~~~~v~~i~~~~~~~~ 511 (915)
........ ...++. .+..+++..-.++ ++++|. .+-.|.+||++..+. +.. ...|...|++++|+|...
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p- 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP- 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence 87665433 344454 4566666654555 566663 356799999998665 444 356999999999999854
Q ss_pred cEEEEEeCCCeEEEEecCCCCc---eeEecCCCCcEEEEEECCCC-CEEEEEeecCCCCceEEEEECCCCeeEEEecCCC
Q 002494 512 QFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (915)
Q Consensus 512 ~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~sp~g-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (915)
++|++||.||.|.+||+..... +.....+...|.++.|..++ +.|.+-+. .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 8999999999999999876532 22333466789999999888 33444442 5668999999887665554321
Q ss_pred C------------CceEEEEEcC-CCCEEEEEeC-CCcEEEEeCC---C---CceEEEEcCCCCCCCcceEEEcCCCCEE
Q 002494 588 K------------RSLGVVQFDT-TRNRFLAAGD-EFQIKFWDMD---N---MNMLTTVDADGGLPASPRLRFNKEGSLL 647 (915)
Q Consensus 588 ~------------~~v~~~~~sp-~~~~l~s~~~-dg~i~iwd~~---~---~~~~~~~~~~~~~~~v~~v~~s~~~~~l 647 (915)
- ..|.+ .+| ++..++.++. -|+..++-+. + .+.+..+.++ +...|+++.|...+.++
T Consensus 255 ~~~~d~r~~~~~dY~I~~--~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~~l 331 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINE--HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDVKNDVL 331 (376)
T ss_pred chhhhHHhhhhhhheeec--ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhccccee
Confidence 0 01111 223 3445555443 5666666544 2 2344445442 23378899999999999
Q ss_pred EEEeCCCcEEEEEcCCC
Q 002494 648 AVTTSDNGIKILANSDG 664 (915)
Q Consensus 648 ~s~~~dg~i~iwd~~~~ 664 (915)
.+|+.||.+.+|...+.
T Consensus 332 ~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 332 YTGGEDGLLQAWKVEDA 348 (376)
T ss_pred eccCCCceEEEEecCCc
Confidence 99999999999996443
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-16 Score=144.39 Aligned_cols=281 Identities=19% Similarity=0.254 Sum_probs=195.0
Q ss_pred CEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEE
Q 002494 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (915)
Q Consensus 348 ~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~ 427 (915)
.|.+-+|+|.++ +|++|+.+|+|.+..+.+-..-.. ....+.......+|.++|+.++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 466778999998 588899999999999865321110 000111112247899999999998 44666665
Q ss_pred CCCeEEEEEecCCCc---eeeeEE--eeccc-----CCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCC
Q 002494 428 SKHIVHLYTYNPTGE---LRQHLE--IDAHV-----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (915)
Q Consensus 428 ~dg~i~vwd~~~~~~---~~~~~~--~~~h~-----~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 497 (915)
||.|+-|..+...+ .+.... ...|. ..|+++...|..+. ++.++.|+.++-||+++|+...++++|+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS--i~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS--ILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc--EEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 49999998764322 111111 11122 36899999988884 5666689999999999999999999999
Q ss_pred CCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCC----------CCcEEEEEECCCCCEEEEEeecCCCCc
Q 002494 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP----------GNWCTMMAYSADGTRLFSCGTSKEGES 567 (915)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~~i~~~~~sp~g~~l~~~~~~~~~~~ 567 (915)
+.|.++.-... + ..+++|+.||++|+||.++.++...+... +..|.+++. +..++++++ ..
T Consensus 157 DYvH~vv~R~~-~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRNA-N-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeeccc-C-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-----CC
Confidence 99999976332 2 46999999999999999999887765432 224555554 455777765 44
Q ss_pred eEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCC-CCE
Q 002494 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE-GSL 646 (915)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~ 646 (915)
.+.+|+++..++...|.-.. .+..+.|.. ..++++++.+.|.-|.+. |......+...+ ..++..|+.. -++
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceEE
Confidence 58999999998888876543 577788854 468888888889999886 445444444433 4566666543 345
Q ss_pred EEEEeCCCcEEEE
Q 002494 647 LAVTTSDNGIKIL 659 (915)
Q Consensus 647 l~s~~~dg~i~iw 659 (915)
|-.++..+.+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 5556666666665
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-18 Score=174.94 Aligned_cols=261 Identities=13% Similarity=0.149 Sum_probs=195.2
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEec-----CCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCc
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN-----PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~-----~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~ 478 (915)
+..|...|..++|.|....|++++.||++.+|++. ....+..+..+.+|.++|.|++..+++. .+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCce
Confidence 56689999999999999999999999999999993 2344677788999999999999999999 7999999999
Q ss_pred EEEEEcCCC----------eeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecC--CCCcEEE
Q 002494 479 IKVWDVVAG----------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTM 546 (915)
Q Consensus 479 i~vwd~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~ 546 (915)
|+.|++... .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+.. ..+.-.+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 999965421 2344678999999999999876 5799999999999998765444 22222 1223345
Q ss_pred EEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCC------CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 002494 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (915)
Q Consensus 547 ~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 620 (915)
+.+-...-.+..++. ..+.-.+.+...+..+..+.... ...+..+.++|.+.+.+++.+|+.|+++|..++
T Consensus 445 vd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred EeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 554332211221111 01122233444444343333211 125677889999999999999999999999999
Q ss_pred ceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCC
Q 002494 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675 (915)
Q Consensus 621 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 675 (915)
+++.....|.. .++++++.|+|.+|++++.||.+++|.+... .+......|.
T Consensus 522 ~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k-~~~~es~~~r 573 (577)
T KOG0642|consen 522 KILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK-TCVLESTAHR 573 (577)
T ss_pred ccchheeeccc--eecceeecCCCceEEeecCCceeehhhccch-heeecccccc
Confidence 99999887765 8999999999999999999999999999776 5555544443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-17 Score=153.21 Aligned_cols=288 Identities=15% Similarity=0.190 Sum_probs=194.5
Q ss_pred EEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccC-CCccCeEEEEEc
Q 002494 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCVWG 417 (915)
Q Consensus 340 ~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s 417 (915)
...|. |.+.|+++.|-.+++ |.+|...|.|++|++++...... +. .|...|+.+.--
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~~ 65 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQSI 65 (323)
T ss_pred eeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceeec
Confidence 33444 889999999999985 67899999999999998765432 22 477789999888
Q ss_pred CCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecC-----CCeE--EEEEEeCCC-cEEEEEcCCCee
Q 002494 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP-----NKQL--CIVTCGDDK-MIKVWDVVAGRK 489 (915)
Q Consensus 418 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-----~~~~--~l~s~~~d~-~i~vwd~~~~~~ 489 (915)
|+ ..|.+-+.|+.+.+|++..+..+. -|.-.++++.|.+- ++.. .++.-+... .+.+-|......
T Consensus 66 p~-d~l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq 138 (323)
T KOG0322|consen 66 PN-DSLDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ 138 (323)
T ss_pred CC-cchhhcCCCceEEEEEccCcceEE------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccce
Confidence 87 678888999999999998765433 23334455555432 2110 111111100 122222222111
Q ss_pred EEEe----cCCCCCEEEEEeecCCCc-cEEEEEeCCCeEEEEecCCCCcee----------EecCCCCcEEEEEECCCCC
Q 002494 490 QYTF----EGHEAPVYSVCPHHKESI-QFIFSTAIDGKIKAWLYDYLGSRV----------DYDAPGNWCTMMAYSADGT 554 (915)
Q Consensus 490 ~~~~----~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~~~i~~~~~sp~g~ 554 (915)
+... .+..+.+.+..+...... -+++.|..+|.+.+||+.++.... ....|..++.++.+.+.-.
T Consensus 139 v~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~ 218 (323)
T KOG0322|consen 139 VQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD 218 (323)
T ss_pred eEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc
Confidence 1111 123455666654333222 356778889999999999874333 2345677899999886544
Q ss_pred EEEEEeecCCCCceEEEEECCC--Cee-EEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCC
Q 002494 555 RLFSCGTSKEGESHLVEWNESE--GAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (915)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~--~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (915)
.=++++. +-.+..|++.. +.+ +.....-.+..+..+.+-||++.+|++|.|+.||||..++.+++..+..|..
T Consensus 219 rGisgga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa 294 (323)
T KOG0322|consen 219 RGISGGA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA 294 (323)
T ss_pred CCcCCCc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc
Confidence 4444443 44467777653 222 1111111222577889999999999999999999999999999999998875
Q ss_pred CCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 002494 632 LPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (915)
Q Consensus 632 ~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 661 (915)
.|++++|+|+..++|.++.|++|-+|++
T Consensus 295 --gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 --GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 8999999999999999999999999986
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.6e-15 Score=144.61 Aligned_cols=240 Identities=10% Similarity=0.107 Sum_probs=185.8
Q ss_pred ccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCC--CcEEEEEcC
Q 002494 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVV 485 (915)
Q Consensus 408 ~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d--~~i~vwd~~ 485 (915)
...+..+.|+.|...|..|+.||. ++|+.+...... ........|..+-|+.. +++..+.+ +.+++++.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~---~~~~~~~~IvEmLFSSS----LvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCF---SKDTEGVSIVEMLFSSS----LVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHHhh---cccCCCeEEEEeecccc----eeEEEecCCCceEEEEEcc
Confidence 345777789999999999999885 677766543211 11222335667777654 45555444 459999998
Q ss_pred CCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCC---CCcEEEEEECCCCCEEEEEeec
Q 002494 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP---GNWCTMMAYSADGTRLFSCGTS 562 (915)
Q Consensus 486 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~~~~~~ 562 (915)
.+..+..+. ....|.++.++. +.|+++-.+. |+|||+++.+.+..+... ...+.++++++.+.+++.-+.-
T Consensus 77 k~~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~ 150 (391)
T KOG2110|consen 77 KKTTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST 150 (391)
T ss_pred cCceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC
Confidence 888888775 667899999865 3566665554 999999998877755433 3356667777777788865432
Q ss_pred CCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCceEEEEcCCCCCCCcceEEEc
Q 002494 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (915)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 641 (915)
..|.|.+||..+-+.+..+..|.+ .+-+++|+++|.+||++++.|+ |||+.+.+|+.+..+.-......|.+++|+
T Consensus 151 --t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 151 --TSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred --CCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 266799999999999999999998 9999999999999999999987 699999999999999765445578999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCC
Q 002494 642 KEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 642 ~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
|++++|++.+..++|++|.++..
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999998765
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.4e-16 Score=157.03 Aligned_cols=274 Identities=15% Similarity=0.206 Sum_probs=191.2
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEE
Q 002494 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (915)
Q Consensus 344 ~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l 423 (915)
.|...|.|+.|+.+.. ++.++ .|..+.+|.-.+........ +.+. ..+ ...|-.+- +..=-.....|
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~~~-----~p~d--f~p---t~~h~~~r-s~~~g~~~d~~ 78 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEVAK-----LPDD--FVP---TDMHLGGR-SSGGGKGSDTL 78 (737)
T ss_pred ccceeEEeecccccce-EEEec-cCceEEEeecccchhhhhhh-----CCcc--cCC---cccccccc-ccCCCCCcceE
Confidence 3666788999998886 56555 46666666543332221100 0000 000 00110000 00000123578
Q ss_pred EEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEE
Q 002494 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (915)
Q Consensus 424 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 503 (915)
+.++.||.+.+.+-.. +.-+ .+.+|.+.+.+-.|+|||. -|++++.||.|++|. ++|-...++.....+|.|+
T Consensus 79 ~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 79 LICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred EEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 8899999998887443 2222 5678999999999999999 699999999999999 7776655666677899999
Q ss_pred EeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEe
Q 002494 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (915)
Q Consensus 504 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (915)
+|.|+.+ ..+++.+ +.+.+=.+.....+.....|++-|.++.|++..+.+++++. |-..++||.. |..+..-
T Consensus 152 ~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~S 223 (737)
T KOG1524|consen 152 RWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFTS 223 (737)
T ss_pred EECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-CcccccC
Confidence 9999764 3444443 45666666777788889999999999999999999999985 7789999976 6677766
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 002494 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (915)
Q Consensus 584 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 661 (915)
..|.- +|++++|.|+ ..++.++.+ ++++=.. ..+.|..++||+||..++.|+..|.+.+=.+
T Consensus 224 ~~~ey-~ITSva~npd-~~~~v~S~n-t~R~~~p-------------~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 224 AAEEY-AITSVAFNPE-KDYLLWSYN-TARFSSP-------------RVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred Chhcc-ceeeeeeccc-cceeeeeee-eeeecCC-------------CccceEEEEEcCCCceeeccccCceEEEeee
Confidence 66766 9999999999 666666643 4552111 2237889999999999999999998766443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.7e-15 Score=157.98 Aligned_cols=273 Identities=13% Similarity=0.160 Sum_probs=178.3
Q ss_pred eEEEEEeCCCcEEEEEcCC-CceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEE-CCCeEEEEEe
Q 002494 360 TILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTY 437 (915)
Q Consensus 360 ~ll~~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~-~dg~i~vwd~ 437 (915)
+++++...++.|.+|++.+ ++...... + .+.+....++++|++++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 3445556789999999964 32111000 1 1334567889999999987764 4788999999
Q ss_pred cCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEE-eCCCcEEEEEcCC-Ce---eEEEecCCCCCEEEEEeecCCCcc
Q 002494 438 NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVWDVVA-GR---KQYTFEGHEAPVYSVCPHHKESIQ 512 (915)
Q Consensus 438 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~-~~d~~i~vwd~~~-~~---~~~~~~~~~~~v~~i~~~~~~~~~ 512 (915)
+....+...... ...+....++|+|+++. ++++ ..++.|.+|++.+ +. .+..+. +......++++|++ +
T Consensus 65 ~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~--l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g--~ 138 (330)
T PRK11028 65 ADDGALTFAAES-PLPGSPTHISTDHQGRF--LFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDN--R 138 (330)
T ss_pred CCCCceEEeeee-cCCCCceEEEECCCCCE--EEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCC--C
Confidence 743222221121 22345678999999994 5544 4588999999864 32 233332 23345667787754 5
Q ss_pred EE-EEEeCCCeEEEEecCCCCceeE-----e-cCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCC--C--eeEE
Q 002494 513 FI-FSTAIDGKIKAWLYDYLGSRVD-----Y-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE--G--AIKR 581 (915)
Q Consensus 513 ~l-~s~~~dg~i~iwd~~~~~~~~~-----~-~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~--~--~~~~ 581 (915)
++ ++...++.|.+||+++.+.... . ...+.....++|+|+|++++++.. .++.|.+|++.. + +.+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence 66 4555679999999986432211 1 112345678999999999988764 477899999873 3 2333
Q ss_pred EecCCCC-----CceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCc----eEEEEcCCCCCCCcceEEEcCCCCEEEEEe
Q 002494 582 TYSGFRK-----RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (915)
Q Consensus 582 ~~~~~~~-----~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 651 (915)
.+..... .....+.++|++++++++. .++.|.+|++.... .+...... .....+.++|||++|+++.
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence 3322111 1233588999999999985 47899999986533 22222221 1456899999999999887
Q ss_pred C-CCcEEEEEcC
Q 002494 652 S-DNGIKILANS 662 (915)
Q Consensus 652 ~-dg~i~iwd~~ 662 (915)
. +++|.+|++.
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 5 8999999875
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-16 Score=168.94 Aligned_cols=273 Identities=16% Similarity=0.208 Sum_probs=200.6
Q ss_pred CceeeecCCCcccEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccC
Q 002494 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (915)
Q Consensus 326 ~~~~~~~d~~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (915)
.+.+|+.+.. ..+-..+.....|.|++|+|....+++.|+.+|.|.+||+..+...... .......
T Consensus 223 ~~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-------------~ls~~~~ 288 (555)
T KOG1587|consen 223 VLLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-------------GLSALEV 288 (555)
T ss_pred eEEEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-------------ccccccc
Confidence 4555666655 6677777888999999999999889999999999999999987653110 0111235
Q ss_pred CCccCeEEEEEcCCCC--EEEEEECCCeEEEEEecCCCceeeeEEee---------cccCCeeEEEEecCCCeEEEEEEe
Q 002494 406 DAAISVNRCVWGPDGL--MLGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHPNKQLCIVTCG 474 (915)
Q Consensus 406 ~~~~~v~~~~~spd~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~h~~~v~~~~~s~~~~~~~l~s~~ 474 (915)
.|..+++.+.|..+-. -+++++.||.|..|+++.-........+. .....+++++|.+.... .++.|+
T Consensus 289 sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGT 367 (555)
T KOG1587|consen 289 SHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGT 367 (555)
T ss_pred cCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEc
Confidence 6999999999987544 49999999999999876533211110110 11236899999998877 788999
Q ss_pred CCCcEEEEEcCC---C-----eeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecC-CCCceeEecCCCCcEE
Q 002494 475 DDKMIKVWDVVA---G-----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCT 545 (915)
Q Consensus 475 ~d~~i~vwd~~~---~-----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~ 545 (915)
.+|.|..-+-.. + +.+..+..|.++|+++.++|-.. ..+++++ |-++++|... .......+..+...++
T Consensus 368 e~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~ 445 (555)
T KOG1587|consen 368 EEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVT 445 (555)
T ss_pred CCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceee
Confidence 999988743222 1 12335557899999999988764 3455555 9999999887 4555556666667799
Q ss_pred EEEECCCCCEEEEEeecCCCCceEEEEECCCC--eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 002494 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (915)
Q Consensus 546 ~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 619 (915)
+++|||..-.++.+. +++|.+.+||+... .++.+...+.. ..+.+.|+++|+.+++|...|++++|++..
T Consensus 446 ~vaWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~~~-~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 446 DVAWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVCSP-ALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eeEEcCcCceEEEEE---cCCCceehhhhhccccCCccccccccc-ccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 999999887776665 35888999998643 34444444433 678889999999999999999999999964
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-16 Score=146.01 Aligned_cols=255 Identities=14% Similarity=0.209 Sum_probs=183.2
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCC-------CcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEc
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNV-------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 417 (915)
|.+.|+.++-+|-.+.+|+++..+ ..+.||.+........ ..-| .....+-..+-+.|.|+.|.
T Consensus 62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~tl-------E~v~~Ldteavg~i~cvew~ 132 (370)
T KOG1007|consen 62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SSTL-------ECVASLDTEAVGKINCVEWE 132 (370)
T ss_pred CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--cchh-------hHhhcCCHHHhCceeeEEEc
Confidence 688999999999988899987653 1366777754321100 0000 00011112455689999999
Q ss_pred CCCCEEEEEECCCeEEEEEecCCCceeeeEEe---ecccCCeeEEEEec--CCCeEEEEEEeCCCcEEEEEcCCCeeEEE
Q 002494 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI---DAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (915)
Q Consensus 418 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~h~~~v~~~~~s~--~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 492 (915)
|++..+++-. |..|.+|++..+..+...... ..|....++-+|+| ++. .++ ...|+++..||+++.++...
T Consensus 133 Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~-tt~d~tl~~~D~RT~~~~~s 208 (370)
T KOG1007|consen 133 PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVA-TTSDSTLQFWDLRTMKKNNS 208 (370)
T ss_pred CCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEE-EeCCCcEEEEEccchhhhcc
Confidence 9999998876 788999999987653211111 13556788889998 565 344 45589999999999887766
Q ss_pred ec-CCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCce-eEecCCCCcEEEEEECCCCCEEE-EEeecCCCCceE
Q 002494 493 FE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDAPGNWCTMMAYSADGTRLF-SCGTSKEGESHL 569 (915)
Q Consensus 493 ~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~-~~~~~~~~~~~i 569 (915)
++ +|...|..+.|+|+.. .+|++|+.||.|++||.+..+.+ ..+..|.+.+.++.|+|.-..|+ +++. |..+
T Consensus 209 I~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S----Ds~V 283 (370)
T KOG1007|consen 209 IEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS----DSAV 283 (370)
T ss_pred hhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC----Ccee
Confidence 65 5888999999999854 68999999999999999876654 47788999999999999765554 5553 6667
Q ss_pred EEEECCCC-----------------------------eeEEEecCCCCCceEEEEEcCCCCE-EEEEeCCCcEEEEeCC
Q 002494 570 VEWNESEG-----------------------------AIKRTYSGFRKRSLGVVQFDTTRNR-FLAAGDEFQIKFWDMD 618 (915)
Q Consensus 570 ~~wd~~~~-----------------------------~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~iwd~~ 618 (915)
.+|....- ..+.++..|.+ .|++++||.-..+ ||+-+.||.+.|=.+.
T Consensus 284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred EEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 77765321 12346667777 8999999986665 4557899999886664
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-15 Score=166.20 Aligned_cols=250 Identities=15% Similarity=0.130 Sum_probs=184.4
Q ss_pred CccCeEEEEEcC-CCCEEEEEECCCeEEEEEecCCCce--eee-EEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEE
Q 002494 407 AAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGEL--RQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (915)
Q Consensus 407 ~~~~v~~~~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~--~~~-~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vw 482 (915)
-...|.|+.|+| +..++|.|..+|.|.+||+..+... ... .....|..+++.+.|..+....-|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 567899999999 5667888889999999999887652 111 123468899999999765442248899999999999
Q ss_pred EcCCCee------EEEec------CCCCCEEEEEeecCCCccEEEEEeCCCeEEEEec---CCCC-----ceeEecCCCC
Q 002494 483 DVVAGRK------QYTFE------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY---DYLG-----SRVDYDAPGN 542 (915)
Q Consensus 483 d~~~~~~------~~~~~------~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~---~~~~-----~~~~~~~~~~ 542 (915)
+++.-.. ..... .....++++.|.+.. ...++.|+.+|.|..-+- +... ....+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCC-CceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 123457888898764 478999999999877332 2211 1224556788
Q ss_pred cEEEEEECCCCCEEEEEeecCCCCceEEEEECC-CCeeEEEecCCCCCceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC
Q 002494 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (915)
Q Consensus 543 ~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~ 620 (915)
.|+++.++|-+..++..+ +|.++++|... ...++..+..+.. .+++++|||... .|+++..||.+.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~----gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSV----GDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeee----ccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 999999999887766555 38889999987 6677777777766 799999999875 4556778999999999754
Q ss_pred --ceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 621 --NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 621 --~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
.++.+.... ....+.+.|+++|+.|++|...|++++|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 444444433 236778899999999999999999999999754
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-17 Score=168.13 Aligned_cols=267 Identities=13% Similarity=0.208 Sum_probs=190.5
Q ss_pred Eec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCC
Q 002494 342 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (915)
Q Consensus 342 ~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 420 (915)
++. |.+.|.+++|.|... .+++++.||.+.+|+++....-.... ..+...+.+|.++|.|++.++++
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~-----------~epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKD-----------VEPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccc-----------eeeeEEEecccCceEEEEecCCc
Confidence 444 999999999999997 68999999999999994421111111 11233468899999999999999
Q ss_pred CEEEEEECCCeEEEEEecCCCc-------eeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEe
Q 002494 421 LMLGVAFSKHIVHLYTYNPTGE-------LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (915)
Q Consensus 421 ~~l~s~~~dg~i~vwd~~~~~~-------~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 493 (915)
..+.+|+-||+|+.|++..... ......+.||.+.|+.+++|+... .|++++.||+++.|+...... .++
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-ccc
Confidence 9999999999999996652211 111225679999999999999888 699999999999999765554 333
Q ss_pred cC--CCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecC-------CCCcEEEEEECCCCCEEEEEeecCC
Q 002494 494 EG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTSKE 564 (915)
Q Consensus 494 ~~--~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~sp~g~~l~~~~~~~~ 564 (915)
.. ..+.-.++.+..... .+.++...-+.--++++........+.. ....+.-+.+.|.+...+++..
T Consensus 434 ~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he--- 509 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE--- 509 (577)
T ss_pred CCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc---
Confidence 32 112223444432211 1222222223333334433333332221 1135677888999988888774
Q ss_pred CCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCC
Q 002494 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (915)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 629 (915)
+..|+++|..++.++.....|.. .++++++.|+|.+|++++.||.+++|.+....++.....|
T Consensus 510 -d~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 -DRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred -CCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 77899999999999999999888 8999999999999999999999999999876665544433
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-17 Score=178.33 Aligned_cols=242 Identities=14% Similarity=0.236 Sum_probs=184.2
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd 483 (915)
+.+|.+.|+|+.|...|.++++|+.|..++||..+++.++. ...||.+.|+.++.+..+. ++++++.|..|++|.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVWR 260 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEEe
Confidence 57899999999999999999999999999999999887666 7889999999999988877 799999999999999
Q ss_pred cCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeE---ec-CCCCcEEEEEECCCCCEEEEE
Q 002494 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD---YD-APGNWCTMMAYSADGTRLFSC 559 (915)
Q Consensus 484 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~-~~~~~i~~~~~sp~g~~l~~~ 559 (915)
+.++.++..+.+|.+.|++++|+|-. +.+.||++++||.+-.-.... .. ..+..+.++-|..++..++++
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 99999999999999999999999853 778999999999882111110 01 122356666777777777777
Q ss_pred eecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceE
Q 002494 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (915)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 638 (915)
+. ++.-..|.... +..+.. .+.-+.++.+- .+.+++-.+-.+.+|++.+|.+.+.+.+|.+ .+..+
T Consensus 335 s~----d~ea~n~e~~~------l~~~~~-~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvL 401 (1113)
T KOG0644|consen 335 SR----DGEARNHEFEQ------LAWRSN-LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVL 401 (1113)
T ss_pred cC----CcccccchhhH------hhhhcc-ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc--ceeee
Confidence 64 33344444321 111111 11112222222 4555666777899999999999999988877 78889
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002494 639 RFNK-EGSLLAVTTSDNGIKILANSDGVRLLRM 670 (915)
Q Consensus 639 ~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 670 (915)
.++| +.....+++.||...|||+-.| ..++.
T Consensus 402 d~Hpfn~ri~msag~dgst~iwdi~eg-~pik~ 433 (1113)
T KOG0644|consen 402 DVHPFNPRIAMSAGYDGSTIIWDIWEG-IPIKH 433 (1113)
T ss_pred eecCCCcHhhhhccCCCceEeeecccC-Cccee
Confidence 9999 5556678899999999999988 44443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-15 Score=145.27 Aligned_cols=270 Identities=13% Similarity=0.178 Sum_probs=193.8
Q ss_pred CCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC-CCCEEEEEECC-------CeEEEEEec
Q 002494 367 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGVAFSK-------HIVHLYTYN 438 (915)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-d~~~l~s~~~d-------g~i~vwd~~ 438 (915)
.|+.|.+.++..+... ...+.+..|.+.|+.++-+| |.+.|+++..+ ..+.||.+.
T Consensus 38 ~dNqVhll~~d~e~s~----------------l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ip 101 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSE----------------LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIP 101 (370)
T ss_pred CcceeEEEEecCccch----------------hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecc
Confidence 4567777766654322 22334677899999999999 45566666442 247899886
Q ss_pred CCCce------eeeEEee-cccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCee-EEEec-----CCCCCEEEEEe
Q 002494 439 PTGEL------RQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFE-----GHEAPVYSVCP 505 (915)
Q Consensus 439 ~~~~~------~~~~~~~-~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~-----~~~~~v~~i~~ 505 (915)
..... .....+. .+-+.|.|+.|.|++.+ +++.. |..|.+|++..+.. +..+. .+....++-+|
T Consensus 102 e~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k--lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~W 178 (370)
T KOG1007|consen 102 EPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK--LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAW 178 (370)
T ss_pred cccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe--eEEec-cCceEEEEcccCcchheeecccccccccceeccccc
Confidence 53221 1111222 34568999999999984 65554 88999999987765 33332 24566778899
Q ss_pred ecCCCccEEEEEeCCCeEEEEecCCCCceeEe-cCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCC-CeeEEEe
Q 002494 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTY 583 (915)
Q Consensus 506 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~ 583 (915)
+|..+|+.+++. .|+++..||+++..+...+ ..|+..+..+.|+|+-+++++.+. .|+.|++||.+. ..++..+
T Consensus 179 spHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g---DdgyvriWD~R~tk~pv~el 254 (370)
T KOG1007|consen 179 SPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG---DDGYVRIWDTRKTKFPVQEL 254 (370)
T ss_pred CCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC---CCccEEEEeccCCCcccccc
Confidence 998888777665 5889999999988776644 467789999999999887654443 288899999985 4578889
Q ss_pred cCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCc-----------------------------eEEEEcCCCCCC
Q 002494 584 SGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN-----------------------------MLTTVDADGGLP 633 (915)
Q Consensus 584 ~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~ 633 (915)
.+|.. .|.++.|+|.. +++++||.|..|.+|....-. .+.++..| ..
T Consensus 255 ~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh--ED 331 (370)
T KOG1007|consen 255 PGHSH-WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH--ED 331 (370)
T ss_pred CCCce-EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc--cc
Confidence 99887 99999999954 677789999999999764211 12233334 34
Q ss_pred CcceEEEcC-CCCEEEEEeCCCcEEEEEcC
Q 002494 634 ASPRLRFNK-EGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 634 ~v~~v~~s~-~~~~l~s~~~dg~i~iwd~~ 662 (915)
.|++++||. |.-.+|+-+.||.+.|=.+.
T Consensus 332 SVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 332 SVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 899999998 66678888999999886654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-17 Score=176.58 Aligned_cols=278 Identities=16% Similarity=0.277 Sum_probs=212.2
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCE
Q 002494 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (915)
Q Consensus 343 l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ 422 (915)
+.|-..|+|+.|...|.+ +++|+.|..|+||..+++.++.+ +.+|++.|+.++.+.+..+
T Consensus 187 lgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n~~ 246 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNNTM 246 (1113)
T ss_pred Hhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhhhh
Confidence 458899999999999975 78999999999999999988865 6889999999999999999
Q ss_pred EEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEE---ec-CCCC
Q 002494 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---FE-GHEA 498 (915)
Q Consensus 423 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~---~~-~~~~ 498 (915)
+++++.|..|++|.+.++..+. .+.+|++.|++++|+|- .+.+.||++++||.+-...+.. .. ....
T Consensus 247 iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~ 317 (1113)
T KOG0644|consen 247 IAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKD 317 (1113)
T ss_pred hhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCccccc
Confidence 9999999999999999987766 67899999999999985 4678899999999871111111 01 1123
Q ss_pred CEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCC-EEEEEeecCCCCceEEEEECCCC
Q 002494 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNESEG 577 (915)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~~~~~~~~i~~wd~~~~ 577 (915)
-+-++.+. .++..+.|++.|+.-..|.+..... +...+.-+.++.+-. +.+++- .+..+.+|++.+|
T Consensus 318 ~~~s~~~~--~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwnl~~g 385 (1113)
T KOG0644|consen 318 LVDSILFE--NNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWNLYTG 385 (1113)
T ss_pred ceeeeecc--ccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeeeecccc
Confidence 34444443 3446789999999988886542211 111112222222322 222322 2667889999999
Q ss_pred eeEEEecCCCCCceEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 002494 578 AIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (915)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~sp~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i 656 (915)
...+.+.+|.. .+..+.++|-+..++ +++.||...|||+-.|.+++.+.... ..+....||+||..++...+-|.+
T Consensus 386 ~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh--~kl~d~kFSqdgts~~lsd~hgql 462 (1113)
T KOG0644|consen 386 QLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH--GKLVDGKFSQDGTSIALSDDHGQL 462 (1113)
T ss_pred hhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc--ceeeccccCCCCceEecCCCCCce
Confidence 99999999988 899999999766554 68999999999999998887765332 257788999999999998888999
Q ss_pred EEEEcCCC
Q 002494 657 KILANSDG 664 (915)
Q Consensus 657 ~iwd~~~~ 664 (915)
.|.....+
T Consensus 463 ~i~g~gqs 470 (1113)
T KOG0644|consen 463 YILGTGQS 470 (1113)
T ss_pred EEeccCCC
Confidence 99876544
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-14 Score=156.14 Aligned_cols=268 Identities=14% Similarity=0.186 Sum_probs=174.3
Q ss_pred CCCCceeeecCCC-cccEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CceecccceeeeecccCccccc
Q 002494 323 VAHTPNVYSQDDL-TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQ 400 (915)
Q Consensus 323 ~g~~~~~~~~d~~-~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 400 (915)
.+..+.++..+.. ..+.++++.+.+....++++|+++++++++..++.|.+|++.. +.......
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~-------------- 75 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE-------------- 75 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee--------------
Confidence 3455566655421 2245677777778899999999996555555688999999973 32211100
Q ss_pred ccccCCCccCeEEEEEcCCCCEEEEEEC-CCeEEEEEecCCCce-eeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCc
Q 002494 401 NALLNDAAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (915)
Q Consensus 401 ~~~~~~~~~~v~~~~~spd~~~l~s~~~-dg~i~vwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~ 478 (915)
....+....++|+|++++|++++. ++.|.+|++++...+ .....+ .+.....+++++|+++. ++++...++.
T Consensus 76 ----~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~-l~v~~~~~~~ 149 (330)
T PRK11028 76 ----SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRT-LWVPCLKEDR 149 (330)
T ss_pred ----ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCE-EEEeeCCCCE
Confidence 012234678999999999888764 789999999753322 111122 22345677899999985 4566667799
Q ss_pred EEEEEcCCCeeEE-------EecCCCCCEEEEEeecCCCccEEEEEeC-CCeEEEEecCCC--Cc--eeEecC------C
Q 002494 479 IKVWDVVAGRKQY-------TFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYL--GS--RVDYDA------P 540 (915)
Q Consensus 479 i~vwd~~~~~~~~-------~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~iwd~~~~--~~--~~~~~~------~ 540 (915)
|.+||+.+...+. ... .......+.|+|+ |++++++.. ++.|.+|+++.. .. ...+.. .
T Consensus 150 v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pd--g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~ 226 (330)
T PRK11028 150 IRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPN--QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSD 226 (330)
T ss_pred EEEEEECCCCcccccCCCceecC-CCCCCceEEECCC--CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence 9999997633221 111 1234567888875 467777665 899999999742 21 112211 1
Q ss_pred CCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCe----eEEEecCCCCCceEEEEEcCCCCEEEEEeC-CCcEEEE
Q 002494 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EFQIKFW 615 (915)
Q Consensus 541 ~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iw 615 (915)
......+.++|+|++++++.. +++.|.+|++.... .+...... .....+.++|+|++|++++. +++|.+|
T Consensus 227 ~~~~~~i~~~pdg~~lyv~~~---~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~ 301 (330)
T PRK11028 227 TRWAADIHITPDGRHLYACDR---TASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVY 301 (330)
T ss_pred CccceeEEECCCCCEEEEecC---CCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEE
Confidence 112346889999999998753 46789999985432 22222221 14567899999999998775 8899999
Q ss_pred eCC
Q 002494 616 DMD 618 (915)
Q Consensus 616 d~~ 618 (915)
+++
T Consensus 302 ~~~ 304 (330)
T PRK11028 302 EID 304 (330)
T ss_pred EEc
Confidence 875
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=146.81 Aligned_cols=303 Identities=16% Similarity=0.225 Sum_probs=206.9
Q ss_pred eeecCCCCCceeeecCCC------cccEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeee
Q 002494 318 VSFAGVAHTPNVYSQDDL------TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWD 391 (915)
Q Consensus 318 ~~~s~~g~~~~~~~~d~~------~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~ 391 (915)
..|||+|+++++.+.-.+ +-++.+.+..-+.|..+.|+.|..+++.....++.|.+|++...+-...
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck------- 86 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK------- 86 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE-------
Confidence 469999999988775432 3333333334578999999999998888888999999999987654322
Q ss_pred cccCcccccccccCCCccCeEEEEEcCCCCEE-EEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEE
Q 002494 392 ISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI 470 (915)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l 470 (915)
+.....++.+++|||||+.+ .+...+-.|.||.+.+.+... +.-.+..+..++|+|||+ +.
T Consensus 87 ------------Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~----~~~pK~~~kg~~f~~dg~--f~ 148 (447)
T KOG4497|consen 87 ------------IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL----LPHPKTNVKGYAFHPDGQ--FC 148 (447)
T ss_pred ------------eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE----ecccccCceeEEECCCCc--ee
Confidence 34567789999999999655 556668899999999865432 222344568889999998 44
Q ss_pred EEEeC-C-----------------------------------CcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEE
Q 002494 471 VTCGD-D-----------------------------------KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514 (915)
Q Consensus 471 ~s~~~-d-----------------------------------~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l 514 (915)
+.++. | +.+.|||---.-.+..++ -.-.+..+.|+|.+ +++
T Consensus 149 ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~--qfl 225 (447)
T KOG4497|consen 149 AILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCN--QFL 225 (447)
T ss_pred eeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEecccc--ceE
Confidence 44432 1 223344422111111121 23567888998865 799
Q ss_pred EEEeCCCeEEEEecCC---------------CC------------------------------------------cee--
Q 002494 515 FSTAIDGKIKAWLYDY---------------LG------------------------------------------SRV-- 535 (915)
Q Consensus 515 ~s~~~dg~i~iwd~~~---------------~~------------------------------------------~~~-- 535 (915)
+.|+.|+.+|+.+--+ .. ...
T Consensus 226 avGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~ 305 (447)
T KOG4497|consen 226 AVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKV 305 (447)
T ss_pred EeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceee
Confidence 9999999988752100 00 000
Q ss_pred -Ee------cCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeC
Q 002494 536 -DY------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608 (915)
Q Consensus 536 -~~------~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~ 608 (915)
.+ ..+...+.-++|++|..++++-.. .-.+.+.+||++.-+.-..+...+ +|+...|+|....++.+..
T Consensus 306 ~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd--~~PnalW~Wdlq~l~l~avLiQk~--piraf~WdP~~prL~vctg 381 (447)
T KOG4497|consen 306 HKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND--KYPNALWLWDLQNLKLHAVLIQKH--PIRAFEWDPGRPRLVVCTG 381 (447)
T ss_pred ecccCCCCCCCcccccceeeecCCceEEeeecC--CCCceEEEEechhhhhhhhhhhcc--ceeEEEeCCCCceEEEEcC
Confidence 00 112225677899999999987653 236779999998766544443322 8999999999998888877
Q ss_pred CCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 002494 609 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (915)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~ 655 (915)
...+++|.......+. .+..+ -.|..+.|.-+|..++.++.|..
T Consensus 382 ~srLY~W~psg~~~V~-vP~~G--F~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 382 KSRLYFWAPSGPRVVG-VPKKG--FNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CceEEEEcCCCceEEe-cCCCC--ceeeeEEecCCCcEEEEEcCCce
Confidence 7789999987643333 33333 27899999999999999998863
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=150.19 Aligned_cols=315 Identities=9% Similarity=0.047 Sum_probs=214.8
Q ss_pred EEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCC------CceeEe-cCCCCcEEEEEECCCCCEEEEEeecC
Q 002494 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL------GSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSK 563 (915)
Q Consensus 491 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~-~~~~~~i~~~~~sp~g~~l~~~~~~~ 563 (915)
+.+.+|.+.|+++.|+.+ +++|++|+.|..+++|+++.. +.+... ..|...|.|++|....+.+++++.
T Consensus 50 KD~~~H~GCiNAlqFS~N--~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~-- 125 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHN--DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER-- 125 (609)
T ss_pred hhhhhhccccceeeeccC--CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC--
Confidence 345689999999999865 589999999999999987532 222222 234468999999998888888864
Q ss_pred CCCceEEEEECCCCeeEEEecCCC-CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eEEEEcCCCCCCCcceEEEc
Q 002494 564 EGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN-MLTTVDADGGLPASPRLRFN 641 (915)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s 641 (915)
+++|..-|+.+.+.+..+.... ...|+.+..+|..+.|++.+.++.|.+||.+... .+..+-.........++.|+
T Consensus 126 --~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 126 --WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH 203 (609)
T ss_pred --cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence 7889999999998888776433 1279999999999999999999999999998654 22222211122257789999
Q ss_pred C-CCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCc
Q 002494 642 K-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720 (915)
Q Consensus 642 ~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 720 (915)
| ...+|++.+..+.+.+||.......+....+..+-.. ....
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~-----------------------------~~~~-------- 246 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQ-----------------------------ENTE-------- 246 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCcc-----------------------------cchh--------
Confidence 9 5678889999999999999866433322222111000 0000
Q ss_pred ccccccCCCceeccCCceeeccCCC-ceeEeecCCCCCccceeEeecC----CccCCCceEEEEEecCCceEEEeeccce
Q 002494 721 SISSLGTIDGSRLVDVKPRVAEDVD-KIKSWRIPDISDPSQIKALRLP----DSIAASKVVRLIYTNSGLSLLALASNAV 795 (915)
Q Consensus 721 ~~~~~~~~~~~~s~dg~~la~~~~~-~v~iw~~~~~~~~~~~~~~~~~----~~~h~~~I~~l~~s~d~~~l~~~~~dg~ 795 (915)
.....|+|.|..+.+...+ .-.+||+-. ..|..+.+. |......|.+++|-.|-. +++|+.+-.
T Consensus 247 ------~M~~~~~~~G~Q~msiRR~~~P~~~D~~S----~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~ 315 (609)
T KOG4227|consen 247 ------WMGSLWSPSGNQFMSIRRGKCPLYFDFIS----QRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWG 315 (609)
T ss_pred ------hhheeeCCCCCeehhhhccCCCEEeeeec----ccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccc
Confidence 1234677888766665553 346667652 233333322 222345688899976665 899999999
Q ss_pred eEEeeccccc----CCCCCC---ccccccceeecCCCCCceeccCCCCCCCCCceeEEEEecCCCeEEEec-CCeeEEee
Q 002494 796 HKLWKWQRTE----RNPSGK---ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN 867 (915)
Q Consensus 796 v~iW~l~~~~----~s~dg~---~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~I~~l~~S~dg~~L~s~s-d~~v~vw~ 867 (915)
+++|.++... |..-|. .+-+ .|.+ .+..+. ++| | ..-++.+.|++...+|++.+ .+.+++|.
T Consensus 316 i~~WklP~~~ds~G~~~IG~~~~~~~~-~~~i----~~~~~V--LrG--H-RSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 316 IHIWKLPRANDSYGFTQIGHDEEEMPS-EIFI----EKELTV--LRG--H-RSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eEEEecCCCccccCccccCcchhhCch-hhee----cceeEE--Eec--c-cccccceeecCCcceEeccchhhheeccc
Confidence 9999998743 111111 0000 0111 222222 777 8 99999999999999999999 99999997
Q ss_pred cc
Q 002494 868 MM 869 (915)
Q Consensus 868 l~ 869 (915)
-.
T Consensus 386 ~~ 387 (609)
T KOG4227|consen 386 DH 387 (609)
T ss_pred cc
Confidence 44
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-15 Score=166.08 Aligned_cols=236 Identities=11% Similarity=0.092 Sum_probs=162.5
Q ss_pred CCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECC---CeEEEEEecCCCcee
Q 002494 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELR 444 (915)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~ 444 (915)
+..|.+||........ +..|...+.+.+|||||+.|+.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~~--------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQFI--------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCceE--------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 4688999987654221 35577789999999999999988654 479999998865321
Q ss_pred eeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEE--EcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEE-eCCC
Q 002494 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW--DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST-AIDG 521 (915)
Q Consensus 445 ~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~-~~dg 521 (915)
...+.+ ....++|+|||+. ++++.+.+|.+.|| |+.++. ...+..+...+....|+|++ +.|+.+ ..+|
T Consensus 243 -l~~~~g---~~~~~~wSPDG~~-La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~g 314 (429)
T PRK01742 243 -VASFRG---HNGAPAFSPDGSR-LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDG--QSILFTSDRSG 314 (429)
T ss_pred -EecCCC---ccCceeECCCCCE-EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCC--CEEEEEECCCC
Confidence 112333 3446899999995 33334567765555 665555 44566677778889998864 555544 4678
Q ss_pred eEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCC
Q 002494 522 KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN 601 (915)
Q Consensus 522 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 601 (915)
...+|+++..........+.. .+..|+|||+++++.+. + .+.+||+.+++........ ....+.|+|+|+
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~----~-~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~ 384 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING----D-NVVKQDLTSGSTEVLSSTF---LDESPSISPNGI 384 (429)
T ss_pred CceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC----C-CEEEEECCCCCeEEecCCC---CCCCceECCCCC
Confidence 889998765433222222222 45789999999988763 2 3777999988765433222 234578999999
Q ss_pred EEEEEeCCCcEEEEeC--CCCceEEEEcCCCCCCCcceEEEcCC
Q 002494 602 RFLAAGDEFQIKFWDM--DNMNMLTTVDADGGLPASPRLRFNKE 643 (915)
Q Consensus 602 ~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 643 (915)
+|++++.+|.+.+|++ .+++.+..+..+.+ .+..++|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 9999999998888875 35777888876654 6788999984
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-14 Score=163.71 Aligned_cols=255 Identities=13% Similarity=0.089 Sum_probs=180.1
Q ss_pred cCCCccCeEEEEEcCCC-CEEEEEECCCeEEEEEecCC----CceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCc
Q 002494 404 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~-~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~ 478 (915)
+..|...|..++.++.. .++++||.||+|++|+...- ...+....+......+.++...+.++ .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 56688888888888755 99999999999999997642 22333334444567899999999998 6888999999
Q ss_pred EEEEEcCCC--e-----eEEEecC-CCCCEEEE-EeecCCCccEEEEEeCCCeEEEEecCCCCceeE--ecCCCCcEEEE
Q 002494 479 IKVWDVVAG--R-----KQYTFEG-HEAPVYSV-CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMM 547 (915)
Q Consensus 479 i~vwd~~~~--~-----~~~~~~~-~~~~v~~i-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~ 547 (915)
|++.++... + +...... ..+.+.++ ++........++.+...+.|..||++....... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998752 1 1111111 22334333 343332224788888999999999987655443 34456689999
Q ss_pred EECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCC---CEEEEEe--CCCcEEEEeCCCCce
Q 002494 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR---NRFLAAG--DEFQIKFWDMDNMNM 622 (915)
Q Consensus 548 ~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~s~~--~dg~i~iwd~~~~~~ 622 (915)
+.+|.+.+++.|+. .|.+.+||++-+.++.........+++.+..+|-. ...++++ ..+.|.+|++.+|..
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999885 77799999999888887665444478877777643 4555544 577899999999866
Q ss_pred EEEEcCCCC-----------------CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 623 LTTVDADGG-----------------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 623 ~~~~~~~~~-----------------~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
...+-...+ ........+...+.++.+|+.|..|+.||....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 665543211 011222344445678899999999999998876
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-15 Score=148.75 Aligned_cols=202 Identities=13% Similarity=0.160 Sum_probs=141.3
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 002494 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (915)
Q Consensus 592 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 671 (915)
.+++|+++|..+++++.||++|||+..+...+.....|.. .|.++.|+|||++|++-+.| ..+||+..+| ..++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~--eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHA--EVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcC--ccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhc
Confidence 6789999999999999999999999877766666665555 89999999999999999999 8999999998 333333
Q ss_pred cCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCC-----ceeeccCC-C
Q 002494 672 EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV-----KPRVAEDV-D 745 (915)
Q Consensus 672 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg-----~~la~~~~-~ 745 (915)
....... .. ..+.|+.|+ +..+.... +
T Consensus 224 t~~~k~~------------------------------~~-----------------~~cRF~~d~~~~~l~laa~~~~~~ 256 (398)
T KOG0771|consen 224 TPFSKDE------------------------------MF-----------------SSCRFSVDNAQETLRLAASQFPGG 256 (398)
T ss_pred CCcccch------------------------------hh-----------------hhceecccCCCceEEEEEecCCCC
Confidence 2111100 00 112344444 22222222 6
Q ss_pred ceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEeeccceeEEeecccccCCCCCCccccccceeecCCC
Q 002494 746 KIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPS 825 (915)
Q Consensus 746 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~ 825 (915)
.|+.|++........++...... -...|++|+.|+||++++.|+.||.|.|++...
T Consensus 257 ~v~~~~~~~w~~~~~l~~~~~~~--~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~---------------------- 312 (398)
T KOG0771|consen 257 GVRLCDISLWSGSNFLRLRKKIK--RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKS---------------------- 312 (398)
T ss_pred ceeEEEeeeeccccccchhhhhh--ccCcceeEEEcCCCcEEEEeccCCcEEEEEece----------------------
Confidence 77777765422222222111111 344799999999999999999999999886543
Q ss_pred CCceeccCCCCCCCCCceeEEEEecCCCeEEEec-CCeeEEeeccCC
Q 002494 826 GTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF 871 (915)
Q Consensus 826 ~~~~~~~~~~~~h~~~~I~~l~~S~dg~~L~s~s-d~~v~vw~l~t~ 871 (915)
-+.+. +....| ..-|+.+.|+||.+++++.| |.+.++..+.-.
T Consensus 313 lq~~~--~vk~aH-~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 313 LQRLQ--YVKEAH-LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred eeeeE--eehhhh-eeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 12222 222237 99999999999999999988 999888887763
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6e-15 Score=140.21 Aligned_cols=263 Identities=13% Similarity=0.236 Sum_probs=184.0
Q ss_pred ecCCCcccEEE--EecCCCCEEEEEEcCCCC----eEEEEEeCCCcEEEEEcCCCceecccceeeeecccCccccccccc
Q 002494 331 SQDDLTKTVVR--TLNQGSNVMSMDFHPQQQ----TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (915)
Q Consensus 331 ~~d~~~~~~~~--~l~h~~~V~~v~fspd~~----~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (915)
..+...++.+. ++.|.-+++.+.|.|+.. .+||++ +..+++|.+...+...... . ......-
T Consensus 79 ~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~-~---------~L~~~kn 146 (364)
T KOG0290|consen 79 QLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQ-S---------VLNNNKN 146 (364)
T ss_pred EEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehh-h---------hhccCcc
Confidence 33444444443 356999999999999873 367754 5689999998532111000 0 0000112
Q ss_pred CCCccCeEEEEEcC-CCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEE
Q 002494 405 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 405 ~~~~~~v~~~~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd 483 (915)
..+..++++..|+. |.+++.+++-|-+..|||++++..-.....+-+|...|.+++|...+.+ +|++.|.||.++++|
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFD 225 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFD 225 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEE
Confidence 34677999999998 7789999999999999999997442223367789999999999998877 899999999999999
Q ss_pred cCCCeeEEEe-c--CCCCCEEEEEeecCCCccEEEEEeCC-CeEEEEecCCCCc-eeEecCCCCcEEEEEECCCCC-EEE
Q 002494 484 VVAGRKQYTF-E--GHEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGT-RLF 557 (915)
Q Consensus 484 ~~~~~~~~~~-~--~~~~~v~~i~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~-~~~~~~~~~~i~~~~~sp~g~-~l~ 557 (915)
++..+--..+ + ....+...++|++. +-+++++-..| ..|.+.|++.... +..+..|...|+.++|.|... +|.
T Consensus 226 LR~leHSTIIYE~p~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hic 304 (364)
T KOG0290|consen 226 LRSLEHSTIIYEDPSPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHIC 304 (364)
T ss_pred ecccccceEEecCCCCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceee
Confidence 9875432222 2 22467778888875 44778776665 4699999997654 457889999999999999654 666
Q ss_pred EEeecCCCCceEEEEECCCCe------eEEEecCCCCCceEEEEEcCC-CCEEEEEeCCCcEEE
Q 002494 558 SCGTSKEGESHLVEWNESEGA------IKRTYSGFRKRSLGVVQFDTT-RNRFLAAGDEFQIKF 614 (915)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~------~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~i~i 614 (915)
+++. |.++.+||+...- ++..+.. . ..|+.+.|++. +.+++.+.. +++.|
T Consensus 305 taGD----D~qaliWDl~q~~~~~~~dPilay~a-~-~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 305 TAGD----DCQALIWDLQQMPRENGEDPILAYTA-G-GEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred ecCC----cceEEEEecccccccCCCCchhhhhc-c-ceeeeeeecccCCCEEEEEec-CeeeE
Confidence 7763 7889999987532 2223332 2 27999999964 456666553 34544
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-14 Score=138.44 Aligned_cols=229 Identities=12% Similarity=0.136 Sum_probs=173.6
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
-..+|+|.+|++|+. .+|++..+..|.||.....+.-. ....+..|...|+++.|+|.++.|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 357899999999998 57888888999999988765211 2233678999999999999999999
Q ss_pred EEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeE----EEecCCCCCE
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ----YTFEGHEAPV 500 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~----~~~~~~~~~v 500 (915)
+++.|..-+||....+..-+....+..++..++++.|+|.++ .|++|+.-..|.||-.+...-- +.-+.+.+.|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999966666666667778899999999999999 6999999999999887654321 1223467889
Q ss_pred EEEEeecCCCccEEEEEeCCCeEEEEec-----CCCC-------------ceeEecCCCCcEEEEEECCCCCEEEEEeec
Q 002494 501 YSVCPHHKESIQFIFSTAIDGKIKAWLY-----DYLG-------------SRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (915)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~-----~~~~-------------~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~ 562 (915)
.++.|+|++ -++++|+.|+..+++.. +... ....+....+.+..+.|+|+|..|+..+.
T Consensus 150 ~sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H- 226 (361)
T KOG1523|consen 150 TSLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH- 226 (361)
T ss_pred eeeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-
Confidence 999999965 68999999999999854 1110 11123345678999999999999998874
Q ss_pred CCCCceEEEEECCCCe-eEEEecCCCCCceEEEEEcCC
Q 002494 563 KEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTT 599 (915)
Q Consensus 563 ~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~sp~ 599 (915)
|..+.+-|..... .+.......- +..++.|-.+
T Consensus 227 ---ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise 260 (361)
T KOG1523|consen 227 ---DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISE 260 (361)
T ss_pred ---CCceEEeecCCCchhccchhhccC-CceeeEeecC
Confidence 7779888877654 2333332222 5566666533
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-14 Score=158.32 Aligned_cols=291 Identities=13% Similarity=0.171 Sum_probs=203.4
Q ss_pred CEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC--CCCEEEE
Q 002494 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGV 425 (915)
Q Consensus 348 ~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--d~~~l~s 425 (915)
.-..+.|+|=.+ .++++.....|+|||.+.++.+.... .. ......|+.+.+-. |..++++
T Consensus 1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~-----n~-----------~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFD-----NG-----------AFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred CCceeeecCCCc-eeEEcCCcceEEEEecccCceecccc-----CC-----------CCCCCccceeeeecccchhheee
Confidence 466788888887 56767667789999999998764311 11 12345688888765 5668999
Q ss_pred EECCCeEEEEEecCC--Cc---eeeeEEeecc----cCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEec-C
Q 002494 426 AFSKHIVHLYTYNPT--GE---LRQHLEIDAH----VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-G 495 (915)
Q Consensus 426 ~~~dg~i~vwd~~~~--~~---~~~~~~~~~h----~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~ 495 (915)
|+.||.|+||+--.. +. +.....+.++ .+.=.-+.|..... +|+++|.-..|+|||.........+. +
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEeecccC
Confidence 999999999974322 11 1111122222 11123457777666 56666668899999998877776654 3
Q ss_pred CCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCc---eeEecCCCCc--EEEEEECCCCCE-EEEEeecCCCCceE
Q 002494 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNW--CTMMAYSADGTR-LFSCGTSKEGESHL 569 (915)
Q Consensus 496 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~--i~~~~~sp~g~~-l~~~~~~~~~~~~i 569 (915)
....|+++.-+-. .|+.++.|..||.|++||.+.... +.....|... |..+.+.+.|-. |++++. +|.|
T Consensus 1207 s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~----~G~I 1281 (1387)
T KOG1517|consen 1207 SSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ----DGDI 1281 (1387)
T ss_pred CCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----CCeE
Confidence 4456777765443 368999999999999999886543 3345556654 999999887754 788875 6669
Q ss_pred EEEECCCCeeEEE--ecCCC--CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCC-----CCCCCcceEEE
Q 002494 570 VEWNESEGAIKRT--YSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPASPRLRF 640 (915)
Q Consensus 570 ~~wd~~~~~~~~~--~~~~~--~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~ 640 (915)
++||++....... ...|. +...+++..++....+|+|+. +.|+||++.. +.+..+..+ .....+.+++|
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeee
Confidence 9999997422221 22222 224889999999999999988 8999999974 444443322 12346789999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 641 NKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 641 s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
+|..-++|+|+.|.+|.||....+
T Consensus 1360 HP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cchhHhhhhccCCceEEEeecCCc
Confidence 999999999999999999987755
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-15 Score=140.84 Aligned_cols=287 Identities=14% Similarity=0.152 Sum_probs=190.1
Q ss_pred cccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEee-cccCCeeEEEEecCCCeEEEEEEeCCCcEE
Q 002494 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (915)
Q Consensus 402 ~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~ 480 (915)
.++.+|.+.|+++.|..++. |.+|...|.|++|++.+..... .+. .|...|+.+.-.|++. +.+-+.|+.+.
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~ 80 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQSIPNDS---LDTQGRDPLLI 80 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhhccceeeceeecCCcc---hhhcCCCceEE
Confidence 34668999999999988775 8899999999999999875543 344 4677899999999865 88999999999
Q ss_pred EEEcCCCeeEEEecCCCCCEEEEEeecCC-----C--ccEEEEEeCCCe-EEEEecCCCCceeEe----cCCCCcEEEEE
Q 002494 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKE-----S--IQFIFSTAIDGK-IKAWLYDYLGSRVDY----DAPGNWCTMMA 548 (915)
Q Consensus 481 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~-----~--~~~l~s~~~dg~-i~iwd~~~~~~~~~~----~~~~~~i~~~~ 548 (915)
+|++.-+..+. .|+-.++++.|.+.. . .+.++.-+.... +.+-|......+... ....+.+.+..
T Consensus 81 lw~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 81 LWTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred EEEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 99988754332 233444444443211 0 011221111100 122222211111111 12233566665
Q ss_pred ECC-CCC-EEEEEeecCCCCceEEEEECCCCeeEE----------EecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 002494 549 YSA-DGT-RLFSCGTSKEGESHLVEWNESEGAIKR----------TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (915)
Q Consensus 549 ~sp-~g~-~l~~~~~~~~~~~~i~~wd~~~~~~~~----------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 616 (915)
+.. +++ .++.++. +++.+.+||+.++..+. ....|.. ++.++.+.+.-..=++|+.+..+..|.
T Consensus 158 ~~~~c~s~~lllaGy---Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~q-pvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGY---ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQ-PVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred ccccccceEEEEEec---cCCeEEEEEccCCceeeccccccccccchhhccC-cceeeeechhhcCCcCCCccccceeee
Confidence 432 344 4445543 48889999999884333 3345555 888999887666667788888899998
Q ss_pred CCCC--ceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCcee
Q 002494 617 MDNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694 (915)
Q Consensus 617 ~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 694 (915)
+... .+.......-....|..+.+-||++.+|+++.|+.|+||+..+. ..+..++-|...+..+
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn~v------------- 299 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVNAV------------- 299 (323)
T ss_pred eccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC-CchhhhhhhhcceeEE-------------
Confidence 8643 22111111111226888999999999999999999999999999 8888999888766544
Q ss_pred eecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCC-CceeEeec
Q 002494 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRI 752 (915)
Q Consensus 695 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~ 752 (915)
+|+||...+|.++. .+|.+|++
T Consensus 300 ------------------------------------Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 ------------------------------------AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ------------------------------------EeCCCCchhhhccCCceEEeeec
Confidence 67778778887777 78888875
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-14 Score=158.01 Aligned_cols=295 Identities=14% Similarity=0.190 Sum_probs=204.9
Q ss_pred CCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCC---CCCEEEEEeecCCCccEEEEEeCCCeEEEEecCC
Q 002494 454 GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH---EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (915)
Q Consensus 454 ~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~ 530 (915)
+....+.|+|-.. .++++...-.|+|||.+.++.+..|..+ ...|+.+++-...+..++++|+.||.|+||+--.
T Consensus 1065 ~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3566788888888 5888877778999999999988877654 3678888887777778999999999999996322
Q ss_pred C--Cce--e-Ee-------cCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEc-
Q 002494 531 L--GSR--V-DY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD- 597 (915)
Q Consensus 531 ~--~~~--~-~~-------~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s- 597 (915)
. +.. + -+ .+..+.-.-+.|.....+|+++|. -..|++||...-..+..+....+..++++.-+
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd----~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD----VRSIRIWDAHKEQVVADIPYGSSTLVTALSADL 1218 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC----eeEEEEEecccceeEeecccCCCccceeecccc
Confidence 1 111 1 11 111111144567766666666652 56799999998888777776655567766544
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCC---ceEEEEcCCCCCCCcceEEEcCCCCE-EEEEeCCCcEEEEEcCCCceeeeeccC
Q 002494 598 TTRNRFLAAGDEFQIKFWDMDNM---NMLTTVDADGGLPASPRLRFNKEGSL-LAVTTSDNGIKILANSDGVRLLRMLEG 673 (915)
Q Consensus 598 p~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~ 673 (915)
+.|+.+++|..||.|++||.+.. ..+.....|....+|..+.+.+.|-- |++|+.||.|++||+... .....+.
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~~~~- 1296 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKETFLT- 1296 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-cccccce-
Confidence 34789999999999999999854 35666667766556999999986665 999999999999999863 1111110
Q ss_pred CCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCCCceeEeecC
Q 002494 674 RAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIP 753 (915)
Q Consensus 674 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~~~v~iw~~~ 753 (915)
.+.-|+.+. .-+.+...++...+|+|+.+.|+||++.
T Consensus 1297 -----------------------------------iv~~~~yGs--------~lTal~VH~hapiiAsGs~q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1297 -----------------------------------IVAHWEYGS--------ALTALTVHEHAPIIASGSAQLIKIYSLS 1333 (1387)
T ss_pred -----------------------------------eeeccccCc--------cceeeeeccCCCeeeecCcceEEEEecC
Confidence 011121111 0123345567788888888999999988
Q ss_pred CCCCccceeEeec-CC--ccCCCceEEEEEecCCceEEEeeccceeEEeeccc
Q 002494 754 DISDPSQIKALRL-PD--SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (915)
Q Consensus 754 ~~~~~~~~~~~~~-~~--~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~ 803 (915)
. ..+..+.. ++ ....+.++|++|+|---.||+|+.|.+|.||.-..
T Consensus 1334 G----~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1334 G----EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred h----hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 4 22222221 11 11456789999999999899999999999996544
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.1e-13 Score=131.34 Aligned_cols=282 Identities=11% Similarity=0.154 Sum_probs=197.6
Q ss_pred CCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEE
Q 002494 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (915)
Q Consensus 346 ~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s 425 (915)
...+..+.|+.|.. +|..|+.|| .++|+......... .......|.-+-|+. .++|.
T Consensus 5 ~~ti~~~~~Nqd~~-~lsvGs~~G-yk~~~~~~~~k~~~-------------------~~~~~~~IvEmLFSS--SLvai 61 (391)
T KOG2110|consen 5 KPTINFIGFNQDST-LLSVGSKDG-YKIFSCSPFEKCFS-------------------KDTEGVSIVEMLFSS--SLVAI 61 (391)
T ss_pred Ccceeeeeecccee-EEEccCCCc-eeEEecCchHHhhc-------------------ccCCCeEEEEeeccc--ceeEE
Confidence 34677788999986 788888877 47777665432111 011233444455554 46665
Q ss_pred EECC--CeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCC-CCCEEE
Q 002494 426 AFSK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-EAPVYS 502 (915)
Q Consensus 426 ~~~d--g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~ 502 (915)
.+.+ ..+++++.+.+..+... .....|.++.++.+ .|+.+-.+ .|+|||+++.+.++++..- ..+-.-
T Consensus 62 V~~~qpr~Lkv~~~Kk~~~ICe~----~fpt~IL~VrmNr~----RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl 132 (391)
T KOG2110|consen 62 VSIKQPRKLKVVHFKKKTTICEI----FFPTSILAVRMNRK----RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGL 132 (391)
T ss_pred EecCCCceEEEEEcccCceEEEE----ecCCceEEEEEccc----eEEEEEcc-cEEEEecccceeehhhhccCCCccce
Confidence 5543 45899998876655422 23457999999654 45555544 4999999999999888654 222223
Q ss_pred EEeecCCCccEEEEEe--CCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeE
Q 002494 503 VCPHHKESIQFIFSTA--IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (915)
Q Consensus 503 i~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (915)
++++++..+.+++.-+ ..|.|.+||..+.+....+..|.+.+.+++|+++|.+||+++. ....|+++.+.+|+.+
T Consensus 133 ~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASe---KGTVIRVf~v~~G~kl 209 (391)
T KOG2110|consen 133 CALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASE---KGTVIRVFSVPEGQKL 209 (391)
T ss_pred EeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEecc---CceEEEEEEcCCccEe
Confidence 4556665556777644 3688999999999999999999999999999999999999984 3456899999999999
Q ss_pred EEecCCCC-CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-------------------------------------
Q 002494 581 RTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM------------------------------------- 622 (915)
Q Consensus 581 ~~~~~~~~-~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~------------------------------------- 622 (915)
.+|+.... ..|.+++|+|++.+|++.|+.++|+|+.+.....
T Consensus 210 ~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~ 289 (391)
T KOG2110|consen 210 YEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRK 289 (391)
T ss_pred eeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccc
Confidence 99875432 2688999999999999999999999998864210
Q ss_pred EEEEcCCCCCCCcceEEEc--CCCCEEEEEeCCCcEEEEEcCC
Q 002494 623 LTTVDADGGLPASPRLRFN--KEGSLLAVTTSDNGIKILANSD 663 (915)
Q Consensus 623 ~~~~~~~~~~~~v~~v~~s--~~~~~l~s~~~dg~i~iwd~~~ 663 (915)
......... ..-..+.+. +....+.+++.||.++.|.+.-
T Consensus 290 FAt~~l~~s-~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 290 FATAKLPES-GRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred eeEEEccCC-CccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 000001110 011234444 3678899999999999998764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-15 Score=152.89 Aligned_cols=293 Identities=13% Similarity=0.140 Sum_probs=220.3
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd 483 (915)
+..|.+.|..+.|+..|..|++|+.|..|.+||+..+..... -..+|...|....|-|.....-+++++.||.+++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 678999999999999999999999999999999998765432 234788888888888865433699999999999877
Q ss_pred cCC-Cee--EEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEe---cCCCC---cEEEEEECCCCC
Q 002494 484 VVA-GRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGN---WCTMMAYSADGT 554 (915)
Q Consensus 484 ~~~-~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~---~i~~~~~sp~g~ 554 (915)
+.. +.+ ...+..|.++|..++.-|... .-|.+++.|+.+.-+|++.......+ ..+.. ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 653 322 334556999999999888744 67999999999999999876543322 12222 567888999776
Q ss_pred -EEEEEeecCCCCceEEEEECCCCe------eEEEecCC-----CCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC--C
Q 002494 555 -RLFSCGTSKEGESHLVEWNESEGA------IKRTYSGF-----RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--M 620 (915)
Q Consensus 555 -~l~~~~~~~~~~~~i~~wd~~~~~------~~~~~~~~-----~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~--~ 620 (915)
.+++++. +..+++||.+.-. .+.++..+ ....|++++++.++.-+.++-.|-.|+++.-.- |
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5667664 6679999976422 12333222 122789999998888888888888899995432 2
Q ss_pred ----------ceEEE-EcCCCCCCCcceEEE-cCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCC
Q 002494 621 ----------NMLTT-VDADGGLPASPRLRF-NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISS 688 (915)
Q Consensus 621 ----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 688 (915)
..+.. +++|.....|..+-| -|...|+++|++-|.|.||+-.++ ++++.+++....|.++...
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~VVNCLEpH---- 445 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHVVNCLEPH---- 445 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhcccceEeccCCC----
Confidence 22333 677877667878765 578899999999999999999998 8999999888766666555
Q ss_pred CCCceeeecccCccccccCCcccCCCC
Q 002494 689 KPLTINALGPASNVSAAIAPTLERPDR 715 (915)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~v~~~~~ 715 (915)
|-..++++++ ++..|++|-.
T Consensus 446 --P~~PvLAsSG-----id~DVKIWTP 465 (559)
T KOG1334|consen 446 --PHLPVLASSG-----IDHDVKIWTP 465 (559)
T ss_pred --CCCchhhccC-----CccceeeecC
Confidence 6677888877 6778888854
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-14 Score=158.67 Aligned_cols=215 Identities=16% Similarity=0.170 Sum_probs=151.1
Q ss_pred EeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC-------eeEEEecCCCCCEEEEEeecCCCccEEEEEeCC
Q 002494 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID 520 (915)
Q Consensus 448 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d 520 (915)
.+..|...+..++.++.... +|+|||.||+|++||.+.- +...++.....++.++...+. ++.++.++.|
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s-~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~--~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTS-LFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN--GDQFAVSTKD 1119 (1431)
T ss_pred hhhhccccccceeecCCCCc-eEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC--CCeEEEEcCC
Confidence 56678888999998877733 8999999999999998641 223344445677777777654 4689999999
Q ss_pred CeEEEEecCCCCce-------eEe--cCCCCcEEEEEECC-CCC-EEEEEeecCCCCceEEEEECCCCeeEEEecC--CC
Q 002494 521 GKIKAWLYDYLGSR-------VDY--DAPGNWCTMMAYSA-DGT-RLFSCGTSKEGESHLVEWNESEGAIKRTYSG--FR 587 (915)
Q Consensus 521 g~i~iwd~~~~~~~-------~~~--~~~~~~i~~~~~sp-~g~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~ 587 (915)
|.|++.+++..... ... ...+..+..-+|.. .+. .++.+.. .+.|..||.+.......++. ..
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~----~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATD----LSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEe----ccceEEecchhhhhHHhhhcCccc
Confidence 99999998762111 111 11222333334433 233 3444442 66699999987665554432 33
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCC---CCEEEEEe--CCCcEEEEEcC
Q 002494 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE---GSLLAVTT--SDNGIKILANS 662 (915)
Q Consensus 588 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~---~~~l~s~~--~dg~i~iwd~~ 662 (915)
+ .|++++.+|.++++++|+..|.+.+||++-+.++........ .+++.+..+|- ....++++ ..+.|.+|++.
T Consensus 1196 G-~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1196 G-LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred c-ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 4 899999999999999999999999999999999988876544 47888888773 24555544 47889999999
Q ss_pred CCceeeeecc
Q 002494 663 DGVRLLRMLE 672 (915)
Q Consensus 663 ~~~~~~~~~~ 672 (915)
+| .+..++-
T Consensus 1274 ~g-~~~~vl~ 1282 (1431)
T KOG1240|consen 1274 TG-LRQTVLW 1282 (1431)
T ss_pred cC-cceEEEE
Confidence 98 4444443
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-14 Score=146.01 Aligned_cols=290 Identities=11% Similarity=0.131 Sum_probs=212.9
Q ss_pred cEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEc
Q 002494 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (915)
Q Consensus 338 ~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 417 (915)
++++.+.+...-+.|..||||+|++|+|...-.|++||+..-.....+. -....|.-.-.+
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-------------------lDae~V~feiLs 103 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-------------------LDAEVVDFEILS 103 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-------------------ccccceeEEEec
Confidence 4566778889999999999999999999999999999998765443211 023345555566
Q ss_pred CCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCC
Q 002494 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (915)
Q Consensus 418 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 497 (915)
.|-..++.-..|.+|-+....+ . +....+ ...-.+++++.-... |+.++....|+-+++..|+.+..+....
T Consensus 104 DD~SK~v~L~~DR~IefHak~G-~--hy~~RI---P~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~ 175 (703)
T KOG2321|consen 104 DDYSKSVFLQNDRTIEFHAKYG-R--HYRTRI---PKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDS 175 (703)
T ss_pred cchhhheEeecCceeeehhhcC-e--eeeeec---CcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccccc
Confidence 6666777777788876654322 1 111011 223455666544443 4455556679999999999999998888
Q ss_pred CCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecC------CC-----CcEEEEEECCCCCEEEEEeecCCCC
Q 002494 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA------PG-----NWCTMMAYSADGTRLFSCGTSKEGE 566 (915)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~-----~~i~~~~~sp~g~~l~~~~~~~~~~ 566 (915)
+.++++.+++.. .+|++|+.+|.|.+||.++......+.. +. ..|+++.|+.+|-.+++|+. .
T Consensus 176 ~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~ 249 (703)
T KOG2321|consen 176 GELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----T 249 (703)
T ss_pred ccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----C
Confidence 999999998865 5899999999999999987665443321 11 25999999999999999885 7
Q ss_pred ceEEEEECCCCeeEEEecCCCCCceEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCC
Q 002494 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (915)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 644 (915)
|.+.+||+++.+++..-.....-+|..+.|.+. ++.+++. +...++|||-.+|+....+.... .++.+++-|++
T Consensus 250 G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~s 325 (703)
T KOG2321|consen 250 GSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS---DLNDFCFVPGS 325 (703)
T ss_pred CcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC---CcCceeeecCC
Confidence 789999999988766543333338888999775 3444443 45579999999999988876543 68999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCC
Q 002494 645 SLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 645 ~~l~s~~~dg~i~iwd~~~~ 664 (915)
-+++++-.++.+..|-+..-
T Consensus 326 Gm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 326 GMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred ceEEEecCCCcceeEEcccc
Confidence 99999999999888876643
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-12 Score=140.99 Aligned_cols=280 Identities=14% Similarity=0.154 Sum_probs=180.4
Q ss_pred EEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCC
Q 002494 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT 440 (915)
Q Consensus 361 ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~ 440 (915)
++++-..+|.|.+.|..+.+.+.. +......-..+.|+|||+++.+++.||.|.++|+.++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~-------------------i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~ 68 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVAR-------------------IPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG 68 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEE-------------------EE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS
T ss_pred EEEEecCCCEEEEEECCCCeEEEE-------------------EcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc
Confidence 345556789999999999887753 1222222345789999999999999999999999998
Q ss_pred CceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCC-------CCCEEEEEeecCCCccE
Q 002494 441 GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-------EAPVYSVCPHHKESIQF 513 (915)
Q Consensus 441 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~~~ 513 (915)
+.+... .. .....++++|+||+. ++++...++.+.++|..+.+.++.+... ..++..+..++... .+
T Consensus 69 ~~v~~i---~~-G~~~~~i~~s~DG~~-~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~f 142 (369)
T PF02239_consen 69 KVVATI---KV-GGNPRGIAVSPDGKY-VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-EF 142 (369)
T ss_dssp SEEEEE---E--SSEEEEEEE--TTTE-EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-EE
T ss_pred cEEEEE---ec-CCCcceEEEcCCCCE-EEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC-EE
Confidence 876643 22 345788999999994 4445567899999999999988877532 34566676666542 35
Q ss_pred EEEEeCCCeEEEEecCCCCcee-EecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEec--------
Q 002494 514 IFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-------- 584 (915)
Q Consensus 514 l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-------- 584 (915)
+++.-..+.|.+.|........ .............|+|++++++.+.. +...|.++|.++++.+..+.
T Consensus 143 Vv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~---~sn~i~viD~~~~k~v~~i~~g~~p~~~ 219 (369)
T PF02239_consen 143 VVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN---GSNKIAVIDTKTGKLVALIDTGKKPHPG 219 (369)
T ss_dssp EEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG---GGTEEEEEETTTTEEEEEEE-SSSBEET
T ss_pred EEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccc---ccceeEEEeeccceEEEEeecccccccc
Confidence 5555556888888887665443 22334556788999999999887654 24467777777765443221
Q ss_pred -----------------------------------------------CCCCCceEEEEEcCCCCEEEEE----eCCCcEE
Q 002494 585 -----------------------------------------------GFRKRSLGVVQFDTTRNRFLAA----GDEFQIK 613 (915)
Q Consensus 585 -----------------------------------------------~~~~~~v~~~~~sp~~~~l~s~----~~dg~i~ 613 (915)
.... . .-+..+|+++++++. ...++|.
T Consensus 220 ~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~-g-lFi~thP~s~~vwvd~~~~~~~~~v~ 297 (369)
T PF02239_consen 220 PGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG-G-LFIKTHPDSRYVWVDTFLNPDADTVQ 297 (369)
T ss_dssp TEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS-S---EE--TT-SEEEEE-TT-SSHT-EE
T ss_pred ccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC-c-ceeecCCCCccEEeeccCCCCCceEE
Confidence 1100 1 225668999999987 3558999
Q ss_pred EEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCC--CcEEEEEcCCCceeeeecc
Q 002494 614 FWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD--NGIKILANSDGVRLLRMLE 672 (915)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~ 672 (915)
++|.++.+.+..+....+. .+..+.|+++|+.+..+..+ +.|.+||..+. +..+.+.
T Consensus 298 viD~~tl~~~~~i~~~~~~-~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl-~~~~~i~ 356 (369)
T PF02239_consen 298 VIDKKTLKVVKTITPGPGK-RVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL-KEKKRIP 356 (369)
T ss_dssp EEECCGTEEEE-HHHHHT---EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT-EEEEEEE
T ss_pred EEECcCcceeEEEeccCCC-cEeccEECCCCCEEEEEEecCCCEEEEEECCCc-EEEEEEE
Confidence 9999999888777533221 47899999999977666554 36999999998 6666665
|
... |
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-13 Score=127.73 Aligned_cols=235 Identities=10% Similarity=0.159 Sum_probs=174.1
Q ss_pred cCeEEEEEcCCCCEEEEEECCCeEEEEEecCCC-------ceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEE
Q 002494 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (915)
Q Consensus 409 ~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~v 481 (915)
..|..-+|+|.+++|++|+.+|.|.+..+++-. .........+|.++|..++|..+ +|++|+ ||.|+-
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~----~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD----FLLSGG-DGLVYG 85 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh----heeecc-CceEEE
Confidence 346667899999999999999999999886411 01222345789999999999832 566666 599999
Q ss_pred EEcCCCee------EEEec--CC-----CCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEE
Q 002494 482 WDVVAGRK------QYTFE--GH-----EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (915)
Q Consensus 482 wd~~~~~~------~~~~~--~~-----~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 548 (915)
|..+.... +.... -| -..|+++...|..+ -++.++.|+.++.||+++++....+.+|...+.++.
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV 163 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence 98764321 11111 11 24578888887653 566677899999999999999999999999999999
Q ss_pred ECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCC---------CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 002494 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR---------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (915)
Q Consensus 549 ~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~---------~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 619 (915)
--.....+++++. ||++++||.++++.+..+.... +..|.+++- +..++++|+.- .+.+|+++.
T Consensus 164 ~R~~~~qilsG~E----DGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp-~lslwhLrs 236 (325)
T KOG0649|consen 164 GRNANGQILSGAE----DGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP-KLSLWHLRS 236 (325)
T ss_pred ecccCcceeecCC----CccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC-ceeEEeccC
Confidence 8555556778774 8899999999999988765432 224444443 56678877654 699999999
Q ss_pred CceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 002494 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 662 (915)
.+....++... .+..+.|. .+.+++++..+.|.-|.+.
T Consensus 237 se~t~vfpipa---~v~~v~F~--~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 237 SESTCVFPIPA---RVHLVDFV--DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CCceEEEeccc---ceeEeeee--cceEEEeccccceeeeeec
Confidence 99999988766 46677776 4567778777889888775
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-13 Score=148.85 Aligned_cols=222 Identities=11% Similarity=0.097 Sum_probs=149.8
Q ss_pred CCCccCeEEEEEcCCCCEEEEEEC---CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCC--cE
Q 002494 405 NDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MI 479 (915)
Q Consensus 405 ~~~~~~v~~~~~spd~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~--~i 479 (915)
..+...+.+.+|||||+.|+..+. +..+++|++.+++.. . +....+.+..+.|+|||+. ++++.+.+| .|
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~---l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I 269 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNL 269 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E---ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEE
Confidence 346678999999999999987653 457999999886532 1 2223334567899999996 333444454 58
Q ss_pred EEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeC-CCeEEEE--ecCCCCceeEecCCCCcEEEEEECCCCCEE
Q 002494 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAW--LYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (915)
Q Consensus 480 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~iw--d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 556 (915)
++||+.+++... +..+...+....|+|++ +.|+..+. ++...+| |+.++.. ..+...........|+|||+++
T Consensus 270 ~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG--~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 270 YVMDLASGQIRQ-VTDGRSNNTEPTWFPDS--QNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFM 345 (429)
T ss_pred EEEECCCCCEEE-ccCCCCCcCceEECCCC--CEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEE
Confidence 899998876544 43445567788898854 66766655 4444555 5554433 3333344455678999999999
Q ss_pred EEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCc---EEEEeCCCCceEEEEcCCCCCC
Q 002494 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ---IKFWDMDNMNMLTTVDADGGLP 633 (915)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~ 633 (915)
+..+.. ++...|++||+.+++.. .+.... ......|+|||++++.++.++. ++++++. |+....+..+.+
T Consensus 346 a~~~~~-~g~~~I~~~dl~~g~~~-~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~-- 418 (429)
T PRK03629 346 VMVSSN-GGQQHIAKQDLATGGVQ-VLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG-- 418 (429)
T ss_pred EEEEcc-CCCceEEEEECCCCCeE-EeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCC--
Confidence 877643 23567999999888654 333221 2345789999999999887654 6777874 555666665544
Q ss_pred CcceEEEcC
Q 002494 634 ASPRLRFNK 642 (915)
Q Consensus 634 ~v~~v~~s~ 642 (915)
.+..++|+|
T Consensus 419 ~~~~p~Wsp 427 (429)
T PRK03629 419 QVKFPAWSP 427 (429)
T ss_pred CcCCcccCC
Confidence 678899987
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.2e-14 Score=155.45 Aligned_cols=219 Identities=13% Similarity=0.128 Sum_probs=144.3
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCC
Q 002494 343 LNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (915)
Q Consensus 343 l~h~~~V~~v~fspd~~~ll~~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 420 (915)
..+...+.+++|||||+++++++..+ ..|++||+.+++...... +.+| ...++|+|||
T Consensus 200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------~~g~---~~~~~wSPDG 259 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-----------------FRGH---NGAPAFSPDG 259 (429)
T ss_pred ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-----------------CCCc---cCceeECCCC
Confidence 34778899999999999755443322 469999998875422100 1222 3468999999
Q ss_pred CEEEEEE-CCCeEEEE--EecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC-eeEEEecCC
Q 002494 421 LMLGVAF-SKHIVHLY--TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGH 496 (915)
Q Consensus 421 ~~l~s~~-~dg~i~vw--d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~ 496 (915)
+.|++++ .+|.+.|| |+.++. .. .+..+...+....|+|||+. +++++..++...||++... .....+ .+
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~l-~~ 333 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGT-PS---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASLV-GG 333 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCC-eE---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEe-cC
Confidence 9998865 57765555 555543 22 34556677889999999995 3445556788888876532 222233 34
Q ss_pred CCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEEC--
Q 002494 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE-- 574 (915)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~-- 574 (915)
.. ....|+|+ |++++.++.++ +.+||+.++........ ....+++|+|||+++++++. ++...+|++
T Consensus 334 ~~--~~~~~SpD--G~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~----~g~~~~l~~~~ 402 (429)
T PRK01742 334 RG--YSAQISAD--GKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSST----QGLGKVLQLVS 402 (429)
T ss_pred CC--CCccCCCC--CCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEc----CCCceEEEEEE
Confidence 33 45677775 46787777765 45599887654432222 23356789999999998875 333444543
Q ss_pred CCCeeEEEecCCCCCceEEEEEcCC
Q 002494 575 SEGAIKRTYSGFRKRSLGVVQFDTT 599 (915)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~sp~ 599 (915)
.+|..++.+..+.+ .+...+|+|-
T Consensus 403 ~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 403 ADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred CCCCceEEccCCCC-CCCCcccCCC
Confidence 35778888887776 6888999984
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.8e-13 Score=141.03 Aligned_cols=463 Identities=11% Similarity=0.092 Sum_probs=269.9
Q ss_pred CCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCC------
Q 002494 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD------ 419 (915)
Q Consensus 346 ~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd------ 419 (915)
...-.++.|+|.| ++|-|+ ...|.+.|..+-+.+.. +..|...|+.+.|.|-
T Consensus 15 ~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~l 72 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDL 72 (1062)
T ss_pred cccccccccCccc--eEEEec-CceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhc
Confidence 3446788999999 466665 56789999888777654 4568899999999873
Q ss_pred ------CCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecC---CCeEEEEEEeCCCcEEEEEcCCCeeE
Q 002494 420 ------GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP---NKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (915)
Q Consensus 420 ------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~~~l~s~~~d~~i~vwd~~~~~~~ 490 (915)
.-.||++...|.|.+||...+..+. .+..|..++.+++|-+. .+. +++.-....++.+|+..+|+..
T Consensus 73 lS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~ 148 (1062)
T KOG1912|consen 73 LSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKF 148 (1062)
T ss_pred cCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCcee
Confidence 1256777888999999998875544 56678889999999753 333 5666666789999999999988
Q ss_pred EEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCC------ceeEecCC-CC---------------------
Q 002494 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------SRVDYDAP-GN--------------------- 542 (915)
Q Consensus 491 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~-~~--------------------- 542 (915)
...........|+.+.|-.. ..+..-+..|.+.+.+.-... ....+... ..
T Consensus 149 Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa 227 (1062)
T KOG1912|consen 149 WKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA 227 (1062)
T ss_pred eccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence 87776666677788887643 456566666666666432111 11111100 00
Q ss_pred ----cEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCC--CEEEEEeCCCcEEEEe
Q 002494 543 ----WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWD 616 (915)
Q Consensus 543 ----~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~s~~~dg~i~iwd 616 (915)
....++|+|.-+.++.... ...+.++|++-..++....-..+ .+.-+.+-|++ ..|++.-.||.+.||-
T Consensus 228 ~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 228 YFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred hHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 1223567887665555554 44499999998888877766665 56667777765 4688899999999997
Q ss_pred CCCC----------------ceEEEEcCCCCCCCcceEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeccC-CCCcc
Q 002494 617 MDNM----------------NMLTTVDADGGLPASPRLRFNKE-GSLLAVTTSDNGIKILANSDGVRLLRMLEG-RAMDK 678 (915)
Q Consensus 617 ~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v 678 (915)
.+.. +....+..-....++ .....|. ...++.--.+|.+.+|.+.+|. ....... ....+
T Consensus 303 rk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~-~~~~cPs~~sa~avl~s~g~~~~w~l~~~r-i~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 303 RKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPV-IGASCPSTPSALAVLYSSGDSTFWQLSNGR-IHLDYRSSSIELV 380 (1062)
T ss_pred eeccCccccccchhhccccccceEEEeechhcccc-eeecCCCChhhhhhhhhcchhHHHhhhcCC-cCccccccccccc
Confidence 7641 222222111111122 2233343 4455555567889999998772 2211111 11111
Q ss_pred cccCCCCCCCCCCce---eeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCC--ceeeccCC-CceeEeec
Q 002494 679 NRCPSEPISSKPLTI---NALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV--KPRVAEDV-DKIKSWRI 752 (915)
Q Consensus 679 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg--~~la~~~~-~~v~iw~~ 752 (915)
....+.. .+.+ ..+..-+.+|. .+.-..+....|.+...........-.|-+ .++|+|.. |+|.++|+
T Consensus 381 ~pf~f~~----~~~~v~k~~l~~LS~dg~--h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdv 454 (1062)
T KOG1912|consen 381 LPFDFNL----STKLVGKTSLISLSDDGS--HSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDV 454 (1062)
T ss_pred ccccccC----ceeehhhccccchhhcCC--CCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEe
Confidence 1111100 0000 00111111110 000001100011111111100000001111 46777877 99999999
Q ss_pred CCCCCccceeEeecCCccCCCceEEEEEecCCceE-EEeec-cceeEEeecccccCCCCCCccccccceeecCCCCCcee
Q 002494 753 PDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSL-LALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT 830 (915)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l-~~~~~-dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~ 830 (915)
.. +.... .+. .|++.|.++.|-....++ ++.+. +..-.++ ...+.+-++++|-...
T Consensus 455 st---~~v~~--~fs--vht~~VkgleW~g~sslvSfsys~~n~~sg~v---------------rN~l~vtdLrtGlsk~ 512 (1062)
T KOG1912|consen 455 ST---NAVAA--SFS--VHTSLVKGLEWLGNSSLVSFSYSHVNSASGGV---------------RNDLVVTDLRTGLSKR 512 (1062)
T ss_pred cc---hhhhh--hhc--ccccceeeeeeccceeEEEeeeccccccccce---------------eeeEEEEEcccccccc
Confidence 85 22221 222 299999999998877744 22221 1100000 0134556777775433
Q ss_pred cc-CCCCCCCCCceeEEEEecCCCeEEEec-CCeeEEeeccCCC
Q 002494 831 ND-INESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK 872 (915)
Q Consensus 831 ~~-~~~~~h~~~~I~~l~~S~dg~~L~s~s-d~~v~vw~l~t~k 872 (915)
.. +.+ .. ..+|+.+..|.-|+||+..- |.-+-+||+++..
T Consensus 513 fR~l~~-~d-espI~~irvS~~~~yLai~Fr~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 513 FRGLQK-PD-ESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLR 554 (1062)
T ss_pred cccCCC-CC-cCcceeeeecccCceEEEEecccchHHHhhccch
Confidence 11 222 13 67899999999999999999 8889999998753
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=139.13 Aligned_cols=201 Identities=14% Similarity=0.162 Sum_probs=150.9
Q ss_pred EEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE
Q 002494 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (915)
Q Consensus 545 ~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~ 624 (915)
..++|+++|..+++++. |+++++|+..+...+.....|+. .|.++.|+|||+.|++.+.| ..+||+.+++..+.
T Consensus 148 k~vaf~~~gs~latgg~----dg~lRv~~~Ps~~t~l~e~~~~~-eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGT----DGTLRVWEWPSMLTILEEIAHHA-EVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccc----cceEEEEecCcchhhhhhHhhcC-ccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence 78999999999999985 88999999877777777777777 89999999999999999999 89999999997777
Q ss_pred EEcCCCCCCCcceEEEcCCC-----CEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeeccc
Q 002494 625 TVDADGGLPASPRLRFNKEG-----SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (915)
Q Consensus 625 ~~~~~~~~~~v~~v~~s~~~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 699 (915)
.............+.|+.|+ ...+....-+.|+.|++.....- ..+....
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~------------------------ 276 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRK------------------------ 276 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhh------------------------
Confidence 66533333356778888877 33334445567777776543110 1111000
Q ss_pred CccccccCCcccCCCCCCCCcccccccC-CCceeccCCceeeccCC-CceeEeecCCCCCccceeEeecCCccCCCceEE
Q 002494 700 SNVSAAIAPTLERPDRGPPAVSISSLGT-IDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVR 777 (915)
Q Consensus 700 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~s~dg~~la~~~~-~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~ 777 (915)
......+ ..+..|.||+++|.++- |.|-|++..+ ++...+.-+.|...|+.
T Consensus 277 ---------------------~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~------lq~~~~vk~aH~~~VT~ 329 (398)
T KOG0771|consen 277 ---------------------KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKS------LQRLQYVKEAHLGFVTG 329 (398)
T ss_pred ---------------------hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEece------eeeeEeehhhheeeeee
Confidence 0111112 45688999999999998 9999999874 33333433569999999
Q ss_pred EEEecCCceEEEeeccceeEEeeccc
Q 002494 778 LIYTNSGLSLLALASNAVHKLWKWQR 803 (915)
Q Consensus 778 l~~s~d~~~l~~~~~dg~v~iW~l~~ 803 (915)
+.|+||.+++++.+.|....+-.+..
T Consensus 330 ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 330 LTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999999999988887766
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-13 Score=132.66 Aligned_cols=241 Identities=17% Similarity=0.180 Sum_probs=182.4
Q ss_pred CccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCC
Q 002494 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~ 486 (915)
-..+|+|.+|++|+..+|.+..+..|.||...+.+.......+..|...|+.+.|+|..+ .|++|+.|..-+||....
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 456899999999999999999999999999988775666668889999999999999998 599999999999999843
Q ss_pred -Ce--eEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCcee----EecCCCCcEEEEEECCCCCEEEEE
Q 002494 487 -GR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSC 559 (915)
Q Consensus 487 -~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~sp~g~~l~~~ 559 (915)
++ +...+..+....+++.|+|.. +.|++|+.-+.|.+|-++....-. .-......|.+++|+|++-+++++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 33 334455688999999999976 689999999999999877544321 223345689999999999999988
Q ss_pred eecCCCCceEEEEECC-----C-------------CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 002494 560 GTSKEGESHLVEWNES-----E-------------GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (915)
Q Consensus 560 ~~~~~~~~~i~~wd~~-----~-------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~ 621 (915)
+. |+..+++..- + |+.+.++.... ..+..+.|+|+|+.|+-.+.|+.+.+-|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~g-gwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSG-GWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCC-CceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 75 6667777531 1 22333343223 389999999999999999999999999987654
Q ss_pred -eEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 002494 622 -MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (915)
Q Consensus 622 -~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw 659 (915)
.+....... .+..++.|-.+... +.++.|..=.++
T Consensus 240 ~~v~~~~~~~--lP~ls~~~ise~~v-v~ag~~c~P~lf 275 (361)
T KOG1523|consen 240 ERVQSVATAQ--LPLLSVSWISENSV-VAAGYDCGPVLF 275 (361)
T ss_pred hhccchhhcc--CCceeeEeecCCce-eecCCCCCceEE
Confidence 233332222 36778888765544 445555433333
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.3e-13 Score=129.66 Aligned_cols=288 Identities=15% Similarity=0.164 Sum_probs=187.9
Q ss_pred CCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCC-CEEE
Q 002494 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG-LMLG 424 (915)
Q Consensus 346 ~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~-~~l~ 424 (915)
...+..++|++.-. -+|++..|-.|++||-....... +-......|+|++|-|.+ +.|+
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCcceee
Confidence 45688999999654 46788899999999977632111 012346679999999965 4666
Q ss_pred EEECCCeEEEEEecCCCcee-----------eeEEeecccCCeeEEEEecCCCeEEEEEEeC-CCcEEEEEcCCCeeEEE
Q 002494 425 VAFSKHIVHLYTYNPTGELR-----------QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYT 492 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~-----------~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~ 492 (915)
.|.. +-|.+|......... +.....+| .+|+++.|.+||. .+++++. |..|.|||..++..+.-
T Consensus 158 vgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 6665 568899865321111 11123345 5899999999999 5777664 57899999999877655
Q ss_pred ecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEE
Q 002494 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (915)
Q Consensus 493 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~w 572 (915)
.....+.+.-+.|+|++ .+++.+.-|+..++|+....-.........+.|...+|+|+|++|+.+.. +...++-.
T Consensus 234 ~~~glgg~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gsp~lysl 308 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GSPRLYSL 308 (445)
T ss_pred cccCCCceeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CCceEEEE
Confidence 44456778889999965 69999999999999965543333333334458999999999998876653 23223222
Q ss_pred ECC--CCe-----------eEEEec------CC--CCCceEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCceE
Q 002494 573 NES--EGA-----------IKRTYS------GF--RKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMNML 623 (915)
Q Consensus 573 d~~--~~~-----------~~~~~~------~~--~~~~v~~~~~sp~~~~l~s~~~d--------g~i~iwd~~~~~~~ 623 (915)
... .+. .+..+. +. -.+.+.+++|+|.|.++++.-.. +.|.+||.+..-.+
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 111 110 011111 10 01267889999999999986533 34677887764433
Q ss_pred EEEc-CCCCCCCcceEEEcC---CCCEEEEEeCCCcEEEEEcC
Q 002494 624 TTVD-ADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 624 ~~~~-~~~~~~~v~~v~~s~---~~~~l~s~~~dg~i~iwd~~ 662 (915)
.... +-.....-.-++|+| ++.+|..+-..|.+.-|++.
T Consensus 389 els~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 389 ELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 3221 111111234577777 67788888888888877764
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-12 Score=140.73 Aligned_cols=295 Identities=13% Similarity=0.094 Sum_probs=188.1
Q ss_pred ceeecCCCCCceeeecCC-------CcccEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceee
Q 002494 317 EVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKV 389 (915)
Q Consensus 317 ~~~~s~~g~~~~~~~~d~-------~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~ 389 (915)
.+.|++||+++.+.+.|. .+.+.+.++.-.....++++|+||+++++++...+.+.++|.++.+.+......-
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~ 120 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG 120 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--E
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccc
Confidence 467899999988877654 3778889999888899999999999877777789999999999988776422110
Q ss_pred eecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECC-CeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeE
Q 002494 390 WDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK-HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468 (915)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~ 468 (915)
.........+..+..+|....++..-.| +.|.+-|....+.+... .+ .......+..|+|+++.
T Consensus 121 ------------~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~-~i-~~g~~~~D~~~dpdgry- 185 (369)
T PF02239_consen 121 ------------MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT-TI-KVGRFPHDGGFDPDGRY- 185 (369)
T ss_dssp ------------E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE-EE-E--TTEEEEEE-TTSSE-
T ss_pred ------------ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee-ee-cccccccccccCcccce-
Confidence 0011245678888889998877666554 88888888776443221 22 23456778999999995
Q ss_pred EEEEEeCCCcEEEEEcCCCeeEEEecC----CCCCEEEE-------EeecCCCccEEEEEeCCCeEEEEecCCCCceeEe
Q 002494 469 CIVTCGDDKMIKVWDVVAGRKQYTFEG----HEAPVYSV-------CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (915)
Q Consensus 469 ~l~s~~~d~~i~vwd~~~~~~~~~~~~----~~~~v~~i-------~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 537 (915)
++++...++.|-++|..+++.+..+.. |..++..+ .|...+.+...++.-....+.+||....+....+
T Consensus 186 ~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I 265 (369)
T PF02239_consen 186 FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI 265 (369)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE
Confidence 455566778999999999887766532 33444332 1221222222322223334556787777788877
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeC--CCcEEEE
Q 002494 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD--EFQIKFW 615 (915)
Q Consensus 538 ~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~--dg~i~iw 615 (915)
...+.. .-+..+|+++++.+..........|.++|.++.+.+..+....+..+..+.|+++|+.+..+.. +|.|.+|
T Consensus 266 ~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 266 PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVY 344 (369)
T ss_dssp E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence 776666 6778899999999883323347789999999998888876444335888999999998777553 4479999
Q ss_pred eCCCCceEEEEc
Q 002494 616 DMDNMNMLTTVD 627 (915)
Q Consensus 616 d~~~~~~~~~~~ 627 (915)
|..+.+.+..++
T Consensus 345 D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 345 DAKTLKEKKRIP 356 (369)
T ss_dssp ETTTTEEEEEEE
T ss_pred ECCCcEEEEEEE
Confidence 999999999887
|
... |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-13 Score=141.29 Aligned_cols=275 Identities=10% Similarity=0.115 Sum_probs=183.5
Q ss_pred CCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEE-----cCCCC
Q 002494 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW-----GPDGL 421 (915)
Q Consensus 347 ~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----spd~~ 421 (915)
+.+....++-.|+++.+- ....+++|+...+..+.. +.....+.+. ...|-+| .|.+-
T Consensus 124 g~~~~~~~~~~gd~lcFn--vg~~lyv~~~~g~~~~~~-------------pi~k~~y~gt--~P~cHdfn~~~a~~~g~ 186 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFN--VGRELYVYSYRGAADLSK-------------PIDKREYKGT--SPTCHDFNSFTATPKGL 186 (636)
T ss_pred cceeeccccCCCCEEEEe--cCCeEEEEEccCcchhcc-------------chhhhcccCC--CCceecccccccCCCCc
Confidence 356666777778776553 345789999886543321 1111112211 2223333 35677
Q ss_pred EEEEEECCCeEEEEEecCCCceeeeEEee--cccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCC
Q 002494 422 MLGVAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (915)
Q Consensus 422 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 499 (915)
-|+.|-..|.|.+.|... ..+....... -.+..|+|+.|-|.++. .++.+-.+|.+++||.. +...
T Consensus 187 dllIGf~tGqvq~idp~~-~~~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~ 254 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPIN-FEVSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCG 254 (636)
T ss_pred ceEEeeccCceEEecchh-hHHHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------cccc
Confidence 788888889999888765 2222111111 12468999999998887 67777889999999862 1111
Q ss_pred EEEEEeecCCCccEEEEEeCCCeEEEEec-CCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCe
Q 002494 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLY-DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (915)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (915)
.+..++.+-.++..+.... |-- .+...+..+......|..++|+|||++||+.+. |+.++|+|..+.+
T Consensus 255 ~t~p~~~~~k~~~~f~i~t-------~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~e 323 (636)
T KOG2394|consen 255 ATAPSYQALKDGDQFAILT-------SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQE 323 (636)
T ss_pred CCCCcccccCCCCeeEEee-------eeccccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHH
Confidence 1112222222222232221 111 111233344444558999999999999999985 8899999999888
Q ss_pred eEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCC---------------
Q 002494 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE--------------- 643 (915)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--------------- 643 (915)
.+..++..-+ ...|++|||||++|++|++|.-|.||.+..++.+..-++|.. .|+.|+|.|-
T Consensus 324 Llg~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkS--WVs~VaFDpytt~~ee~~~~~~~~~ 400 (636)
T KOG2394|consen 324 LLGVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKS--WVSVVAFDPYTTSTEEWNNFSGMDS 400 (636)
T ss_pred HHHHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccc--ceeeEeecccccccccccccccccc
Confidence 8777777666 799999999999999999999999999999998887766655 8999999830
Q ss_pred --------------------C-------------CEEEEEeCCCcEEEEEcCCC
Q 002494 644 --------------------G-------------SLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 644 --------------------~-------------~~l~s~~~dg~i~iwd~~~~ 664 (915)
+ -.|.+.+.|..+.+||+...
T Consensus 401 ~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 401 TFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred cccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence 1 15677888999999999865
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-12 Score=134.26 Aligned_cols=291 Identities=11% Similarity=0.090 Sum_probs=194.6
Q ss_pred CCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEE
Q 002494 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (915)
Q Consensus 346 ~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s 425 (915)
.-++..++|||.|.+ |++. .-..|.+|.-..+..+.. -....|..+.|||.++||.+
T Consensus 32 ~~p~~~~~~SP~G~~-l~~~-~~~~V~~~~g~~~~~l~~---------------------~~~~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 32 NWPVAYVSESPLGTY-LFSE-HAAGVECWGGPSKAKLVR---------------------FRHPDVKYLDFSPNEKYLVT 88 (561)
T ss_pred CcchhheeecCcchh-eehh-hccceEEccccchhheee---------------------eecCCceecccCcccceeee
Confidence 457899999999984 5544 345689998877654421 13346899999999999998
Q ss_pred EECC---------------CeEEEEEecCCCceeeeEEeecccCC--ee-EEEEecCCCeEEEEEEeCCCcEEEEEcCCC
Q 002494 426 AFSK---------------HIVHLYTYNPTGELRQHLEIDAHVGG--VN-DIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (915)
Q Consensus 426 ~~~d---------------g~i~vwd~~~~~~~~~~~~~~~h~~~--v~-~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~ 487 (915)
-+.. +.+.+||..+|..+. .+.+...+ .+ -+.|+-++. +++-. ....++|+++ ++
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t~ 161 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-TD 161 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-CC
Confidence 6543 359999999987665 33333333 44 678888887 44433 3457999997 33
Q ss_pred ee-EEEecCC-CCCEEEEEeecCCCccEEEE-----EeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEe
Q 002494 488 RK-QYTFEGH-EAPVYSVCPHHKESIQFIFS-----TAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (915)
Q Consensus 488 ~~-~~~~~~~-~~~v~~i~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~ 560 (915)
.. ...+..- ...|....|+|.+++..|+. .+.++.+++|.+.....+.........-..+.|.+.|+++++-.
T Consensus 162 n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~ 241 (561)
T COG5354 162 NIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLV 241 (561)
T ss_pred ccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEE
Confidence 21 1112111 25577778888766555543 45678899999886555544333333345788999999876433
Q ss_pred e-------cCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceEEEEcCCCC
Q 002494 561 T-------SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGG 631 (915)
Q Consensus 561 ~-------~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~ 631 (915)
. +.-+...++++++....+ .....-.+ +|..++|.|.++.+++.+ .+..+.++|++.. ....+...
T Consensus 242 ~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~-pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~-- 316 (561)
T COG5354 242 MTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKD-PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ-- 316 (561)
T ss_pred EEeeecccceeccceEEEEeeccccc-ceeccccc-cceeeeecccCCceeEEecccccceeecccccc-eEEecCCc--
Confidence 2 112456788999874333 33323344 899999999998887744 6888999999865 44444333
Q ss_pred CCCcceEEEcCCCCEEEEEeCC---CcEEEEEcCCCceeeeeccC
Q 002494 632 LPASPRLRFNKEGSLLAVTTSD---NGIKILANSDGVRLLRMLEG 673 (915)
Q Consensus 632 ~~~v~~v~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~ 673 (915)
.=+.+.|+|.+++++.++-| |.+-+|+......+...+.+
T Consensus 317 --~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~ 359 (561)
T COG5354 317 --KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG 359 (561)
T ss_pred --ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec
Confidence 34678999999999998764 78999998877544444444
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-12 Score=133.56 Aligned_cols=288 Identities=9% Similarity=0.111 Sum_probs=189.8
Q ss_pred CCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEE
Q 002494 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (915)
Q Consensus 347 ~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~ 426 (915)
...+..++|++|+ ++|. +.++.++|++..++..+.. .....++++.|||-|++|.+=
T Consensus 35 ~~~~v~~~S~~G~-lfA~-~~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T~ 91 (566)
T KOG2315|consen 35 RPCNVFAYSNNGR-LFAY-SDNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLTW 91 (566)
T ss_pred CcceeEEEcCCCc-EEEE-EcCCeEEEEEccCCcEEEE---------------------eccceeeeeeecccccccccc
Confidence 3467889999997 5554 4578999999998853321 112268899999999999762
Q ss_pred -----EC-----CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCC
Q 002494 427 -----FS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (915)
Q Consensus 427 -----~~-----dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 496 (915)
.. .-.+.+|+++++.. .. .+......-++..|+.|.. ++.--..+.+.+|++.+.+.+. -.-|
T Consensus 92 e~~~i~~~~~~~~pn~~v~~vet~~~-~s--~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl~ 164 (566)
T KOG2315|consen 92 EPWAIYGPKNASNPNVLVYNVETGVQ-RS--QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKLS 164 (566)
T ss_pred cccccccCCCCCCCceeeeeecccee-hh--heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eeee
Confidence 11 24578999998432 22 2222222227899999987 4444445789999987643322 2236
Q ss_pred CCCEEEEEeecCCCccEEEE-----EeCCCeEEEEecCCCCceeEe---cCCCCcEEEEEECCCCCEEEE-Eee--c---
Q 002494 497 EAPVYSVCPHHKESIQFIFS-----TAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAYSADGTRLFS-CGT--S--- 562 (915)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~sp~g~~l~~-~~~--~--- 562 (915)
...|....++|.+....+++ .+.-+.+++|.......-... ......-..+.|++-|+-|++ ++. |
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 77888999988754445543 455667999976522211110 011112346788888875432 222 2
Q ss_pred --CCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCceEEEEcCCCCCCCcceE
Q 002494 563 --KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (915)
Q Consensus 563 --~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 638 (915)
.-|+..+++.++....+...+.. .+ +|+++.|+|+++.+++ |-.-.++.|+|++ +.++..+... +-+++
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V~L~k-~G-PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~eg----pRN~~ 317 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSVPLLK-EG-PVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEG----PRNTA 317 (566)
T ss_pred ccccccceEEEEEecCceEEEecCC-CC-CceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCC----Cccce
Confidence 23567899999884444433432 33 9999999999988776 4467789999997 5666665432 56789
Q ss_pred EEcCCCCEEEEEeC---CCcEEEEEcCCCceeeeecc
Q 002494 639 RFNKEGSLLAVTTS---DNGIKILANSDGVRLLRMLE 672 (915)
Q Consensus 639 ~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~ 672 (915)
-|+|.|++|+.+|- .|.|-|||+.+. +++..+.
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~ 353 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNR-KLIAKFK 353 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccch-hhccccc
Confidence 99999999999886 588999999985 5555544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-12 Score=145.42 Aligned_cols=222 Identities=11% Similarity=0.040 Sum_probs=152.5
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEEC---CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCc--
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~-- 478 (915)
+..|...+.+.+|+|||+.|+..+. +..|++||+.++... .+..+.+.+...+|+|||+. ++++.+.++.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 271 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTD 271 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----EeecCCCcccCcEECCCCCE-EEEEEecCCCce
Confidence 3457788999999999999998764 468999999887532 34456667888999999996 4456666655
Q ss_pred EEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeC-CC--eEEEEecCCCCceeEecCCCCcEEEEEECCCCCE
Q 002494 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (915)
Q Consensus 479 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~ 555 (915)
|++||+.++.. ..+..+........|+|++ +.++..+. +| .|.++|+..... ..+......+....|+|||+.
T Consensus 272 Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 272 IYTMDLRSGTT-TRLTDSPAIDTSPSYSPDG--SQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDL 347 (435)
T ss_pred EEEEECCCCce-EEccCCCCccCceeEcCCC--CEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCE
Confidence 77779877764 4455566666778888854 66666653 33 577778765443 333333445667899999999
Q ss_pred EEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCceEEEEcCC
Q 002494 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE------FQIKFWDMDNMNMLTTVDAD 629 (915)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~ 629 (915)
|+....+ .+...|.+||+.++.. ..+... . .+....|+|||+.|+..+.+ ..++++|+..+.. ..+...
T Consensus 348 ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~ 422 (435)
T PRK05137 348 IAFTKQG-GGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP 422 (435)
T ss_pred EEEEEcC-CCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCC
Confidence 9877642 2346799999865543 334322 2 45678999999998875532 3688888876544 444432
Q ss_pred CCCCCcceEEEcC
Q 002494 630 GGLPASPRLRFNK 642 (915)
Q Consensus 630 ~~~~~v~~v~~s~ 642 (915)
. .+...+|+|
T Consensus 423 -~--~~~~p~Wsp 432 (435)
T PRK05137 423 -G--DASDPAWSP 432 (435)
T ss_pred -C--CccCcccCC
Confidence 2 467788887
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-12 Score=133.43 Aligned_cols=312 Identities=12% Similarity=0.142 Sum_probs=199.8
Q ss_pred CcceeecCCCCCceeeecCC------CcccEEEEecCCCCEEEEEEcCCCCeEEEEE-----eCC-----CcEEEEEcCC
Q 002494 315 SDEVSFAGVAHTPNVYSQDD------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVG-----TNV-----GDISLWEVGS 378 (915)
Q Consensus 315 ~~~~~~s~~g~~~~~~~~d~------~~~~~~~~l~h~~~V~~v~fspd~~~ll~~g-----s~d-----g~v~iwd~~~ 378 (915)
.+..++|++|+..+....+. .....+.+.... .++++.|||.|.+ |.+= ..+ -.+.+|++++
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP~g~y-L~T~e~~~i~~~~~~~~pn~~v~~vet 114 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK-KTYDLLFSPKGNY-LLTWEPWAIYGPKNASNPNVLVYNVET 114 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc-eeeeeeecccccc-cccccccccccCCCCCCCceeeeeecc
Confidence 34566777777766655443 233344444444 8999999999985 5441 111 2366777777
Q ss_pred CceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeE
Q 002494 379 RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVND 458 (915)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~ 458 (915)
+...... -...... ++..|++|..+.|-- ..+.+.+|++.+.+.+. -.-|...|+.
T Consensus 115 ~~~~s~~------------------q~k~Q~~-W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~----~kl~~~~i~~ 170 (566)
T KOG2315|consen 115 GVQRSQI------------------QKKMQNG-WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQ----HKLSVSGITM 170 (566)
T ss_pred ceehhhe------------------ehhhhcC-cccccccchhhhhhh-hcceEEEEecCCcccee----eeeeccceee
Confidence 4322210 0112222 688999987654332 24689999988744332 2235778999
Q ss_pred EEEecCCCeEEEEE-----EeCCCcEEEEEcCCCeeEEEec---CCCCCEEEEEeecCCCccEEEEEe-CCC--------
Q 002494 459 IAFAHPNKQLCIVT-----CGDDKMIKVWDVVAGRKQYTFE---GHEAPVYSVCPHHKESIQFIFSTA-IDG-------- 521 (915)
Q Consensus 459 ~~~s~~~~~~~l~s-----~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~~l~s~~-~dg-------- 521 (915)
+.+||.+....+++ .|.-..++||..........+. -....--.+.|++.+.+-++++.+ .|.
T Consensus 171 f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGE 250 (566)
T KOG2315|consen 171 LSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGE 250 (566)
T ss_pred EEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCcccccc
Confidence 99999855424444 3555689999876322111110 011222345676655543333322 233
Q ss_pred -eEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCC
Q 002494 522 -KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (915)
Q Consensus 522 -~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~ 600 (915)
++++.+++.....+.+ ...++|.++.|+|+|+-++++.. -....+.++|++ +.++..+... +-+++-|+|.|
T Consensus 251 q~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyG--fMPAkvtifnlr-~~~v~df~eg---pRN~~~fnp~g 323 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYG--FMPAKVTIFNLR-GKPVFDFPEG---PRNTAFFNPHG 323 (566)
T ss_pred ceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEe--cccceEEEEcCC-CCEeEeCCCC---CccceEECCCC
Confidence 5777777632333332 24679999999999998876642 246679999987 6666665432 45678899999
Q ss_pred CEEEEEeC---CCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeC------CCcEEEEEcCC
Q 002494 601 NRFLAAGD---EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSD 663 (915)
Q Consensus 601 ~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~------dg~i~iwd~~~ 663 (915)
++++.+|- -|.+.|||+.+.+++..+.... -+-+.|+|||.++++++. |+.++||+...
T Consensus 324 ~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~----tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 324 NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN----TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CEEEEeecCCCCCceEEEeccchhhccccccCC----ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 99998774 5889999999988888887653 356899999999999875 78899999753
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-12 Score=125.05 Aligned_cols=240 Identities=12% Similarity=0.141 Sum_probs=168.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCC------CcEEEEE
Q 002494 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWD 483 (915)
Q Consensus 410 ~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d------~~i~vwd 483 (915)
...+++|+.|...+++|..+| .+||+.+.-++.... ....-.-.+..+-| ..+. +.+.||.+ ..+.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r-~~~~~G~~~veMLf--R~N~-laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-QFIDGGFKIVEMLF--RSNY-LALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh-ccccCchhhhhHhh--hhce-EEEecCCCCCCCCCceEEEEe
Confidence 345699999999999998776 689988753321111 11111123333344 2332 23334333 4799999
Q ss_pred cCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCC-CCceeEecCCC--CcEEEEEECCCCCEEEEEe
Q 002494 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPG--NWCTMMAYSADGTRLFSCG 560 (915)
Q Consensus 484 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~--~~i~~~~~sp~g~~l~~~~ 560 (915)
=...+++.++. ...+|.++.+.++ .|++. ..+.|.+|...+ .+....+.... ....+++-+.+...|+.-+
T Consensus 82 D~k~~~i~el~-f~~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg 155 (346)
T KOG2111|consen 82 DLKERCIIELS-FNSEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG 155 (346)
T ss_pred cccCcEEEEEE-eccceeeEEEcCC----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC
Confidence 66777887775 6789999999764 34443 467899998873 34443333222 2233333333333444443
Q ss_pred ecCCCCceEEEEECCCCee--EEEecCCCCCceEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCceEEEEcCCCCCCCcce
Q 002494 561 TSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPR 637 (915)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (915)
. ..|.|.+-|+...+. ...+..|.. .|.|++.+-+|..+|++|..|+ |||||..+|+.+..+.-......|.+
T Consensus 156 ~---k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 156 F---KTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYC 231 (346)
T ss_pred C---ccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence 2 468899999876554 366788888 8999999999999999999887 79999999999999976655668999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 638 LRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 638 v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
++|||+..+||++++.|+++||.+...
T Consensus 232 iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999999999999999999999998865
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.5e-13 Score=146.85 Aligned_cols=222 Identities=15% Similarity=0.104 Sum_probs=149.3
Q ss_pred CCCccCeEEEEEcCCCCEEEEEECC---CeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCC--cE
Q 002494 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MI 479 (915)
Q Consensus 405 ~~~~~~v~~~~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~--~i 479 (915)
..+...+.+.+|+|||+.|+.++.+ ..|++||+.++... .+..+.+...+++|+|||+. ++++.+.++ .|
T Consensus 200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~----~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~I 274 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE----LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEI 274 (433)
T ss_pred ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE----EeccCCCCccCceECCCCCE-EEEEEeCCCCceE
Confidence 4467789999999999999988743 47999999886532 23334445568899999996 444555555 59
Q ss_pred EEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEe-CCCe--EEEEecCCCCceeEecCCCCcEEEEEECCCCCEE
Q 002494 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (915)
Q Consensus 480 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 556 (915)
++||+.+++. ..+..+.......+|+|++ +.++.++ .+|. |.++|+.++.. ..+..........+|+|||+++
T Consensus 275 y~~d~~~g~~-~~lt~~~~~~~~~~~spDG--~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 275 YVMDLGSRQL-TRLTNHFGIDTEPTWAPDG--KSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKI 350 (433)
T ss_pred EEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEE
Confidence 9999988764 3455555555677888754 6666655 4555 55566655443 2222333445578999999999
Q ss_pred EEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCceEEEEcCCCCCC
Q 002494 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLTTVDADGGLP 633 (915)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (915)
+....+ ++...|++||+.+++.. .+... . ......|+|||++++..+. .+.|+++++.. .....+..+.+
T Consensus 351 a~~~~~-~~~~~I~v~d~~~g~~~-~Lt~~-~-~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g-- 423 (433)
T PRK04922 351 AMVHGS-GGQYRIAVMDLSTGSVR-TLTPG-S-LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADG-- 423 (433)
T ss_pred EEEECC-CCceeEEEEECCCCCeE-ECCCC-C-CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCC--
Confidence 876542 23457999999887765 33322 1 2345689999998887664 34688888854 44555544333
Q ss_pred CcceEEEcC
Q 002494 634 ASPRLRFNK 642 (915)
Q Consensus 634 ~v~~v~~s~ 642 (915)
.+..++|+|
T Consensus 424 ~~~~p~wsp 432 (433)
T PRK04922 424 EVREPAWSP 432 (433)
T ss_pred CCCCCccCC
Confidence 567788887
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.2e-13 Score=132.79 Aligned_cols=272 Identities=11% Similarity=0.139 Sum_probs=194.7
Q ss_pred CCCEEEEEEcCCCCe-EEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 346 GSNVMSMDFHPQQQT-ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 346 ~~~V~~v~fspd~~~-ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
...|..++|.-+++. ++...+.+-.+..+.+........ +|++.. .....++|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc--CCEEE
Confidence 457788888776654 333333666777777776655432 122221 22345566666543 34777
Q ss_pred EEECCCeEEEEEecCCCce-eeeEEeecccCCeeEEEEecCCCeEEEEEEeCC--CcEEEEEcCCCeeEEEecCC-----
Q 002494 425 VAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEGH----- 496 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~----- 496 (915)
+|-.+|.+.+|..+.+..- .....+. -...+..+.-++..+. ++++||.. ..+.+||+.+.+.+.+-+.-
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 8888999999999854311 1111222 2346777887777776 67779998 89999999988655443321
Q ss_pred ----CCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCcee-EecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEE
Q 002494 497 ----EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (915)
Q Consensus 497 ----~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~ 571 (915)
.-.++++.|.+..+...|++++.-+.+++||.+.+..++ .+.....+++++...|+|++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 123456677766445789999999999999998766544 66777789999999999999999865 666999
Q ss_pred EECCCCeeEEE-ecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcC
Q 002494 572 WNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (915)
Q Consensus 572 wd~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 642 (915)
+|.+.++.... +.+..+ .++++..+|.+++++++|-|..|||+|+.+.+++....... .++++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence 99999998877 777777 89999999999999999999999999999977776554433 355666554
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.5e-13 Score=146.61 Aligned_cols=224 Identities=13% Similarity=0.092 Sum_probs=147.6
Q ss_pred CCCccCeEEEEEcCCCCEEEEEECC---CeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEE
Q 002494 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (915)
Q Consensus 405 ~~~~~~v~~~~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~v 481 (915)
..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+. ++++.+.++...+
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~I 266 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQI 266 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCceE
Confidence 3467789999999999999987643 469999998875432 3333455678999999996 4456677877666
Q ss_pred EE--cCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeC-CCeEEEEecCCC-CceeEecCCCCcEEEEEECCCCCEEE
Q 002494 482 WD--VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLF 557 (915)
Q Consensus 482 wd--~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~ 557 (915)
|. +..+. ...+..+........|+|++ +.++..+. +|...+|.++.. .....+..........+|+|||++++
T Consensus 267 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 267 YTVNADGSG-LRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEECCCCC-cEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 65 44443 45555555556677888854 66665554 566677765422 22222222333445678999999998
Q ss_pred EEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceEEEEcCCCCCCC
Q 002494 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVDADGGLPA 634 (915)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 634 (915)
..+..+ +...|++||+.+++... +.... ......|+|+|+.|+.++.++ .+++.++ ++.....+..+.+ .
T Consensus 344 ~~s~~~-g~~~I~v~d~~~g~~~~-lt~~~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~ 416 (427)
T PRK02889 344 YISRVG-GAFKLYVQDLATGQVTA-LTDTT--RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--D 416 (427)
T ss_pred EEEccC-CcEEEEEEECCCCCeEE-ccCCC--CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--C
Confidence 776432 34579999998887543 33222 345679999999988876443 3666666 4555666654433 5
Q ss_pred cceEEEcCC
Q 002494 635 SPRLRFNKE 643 (915)
Q Consensus 635 v~~v~~s~~ 643 (915)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 777889873
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-14 Score=145.05 Aligned_cols=280 Identities=15% Similarity=0.156 Sum_probs=216.3
Q ss_pred CCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEE
Q 002494 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (915)
Q Consensus 346 ~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s 425 (915)
.-.-+.+.++.+|+++ +.|+..|.|..+|+.++....+.. -...|..+.|-.+.+++|+
T Consensus 129 eFGPY~~~ytrnGrhl-llgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AV 187 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHL-LLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAV 187 (545)
T ss_pred ccCCeeeeecCCccEE-EecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHh
Confidence 3456789999999964 557789999999999998775422 3456888999999888888
Q ss_pred EECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEe
Q 002494 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (915)
Q Consensus 426 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 505 (915)
+- ...++|||-.+ .++.+ +.. ...|..+.|.|.-- +|++++..|.++.-|+.+|+.+..+....+.+..++-
T Consensus 188 AQ-K~y~yvYD~~G-tElHC---lk~-~~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q 259 (545)
T KOG1272|consen 188 AQ-KKYVYVYDNNG-TELHC---LKR-HIRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ 259 (545)
T ss_pred hh-hceEEEecCCC-cEEee---hhh-cCchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence 75 46789999654 55553 333 34789999999865 8999999999999999999999999888888888888
Q ss_pred ecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecC
Q 002494 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (915)
Q Consensus 506 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (915)
+|-+ -.+-+|...|+|.+|.......+..+..|.++|.++++.++|+++++++. |..++|||++....+.++..
T Consensus 260 NP~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 260 NPYN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred CCcc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec
Confidence 8864 57889999999999999988888888899999999999999999999986 77799999998877766655
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCC-C--CceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 002494 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD-N--MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 586 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~-~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 662 (915)
.. ....+++|..| +++.+....|.||.=. . +..-..+-.|.....|..+.|.|-..+|..|-..|.-.+.-..
T Consensus 334 p~--~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPG 409 (545)
T KOG1272|consen 334 PH--PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPG 409 (545)
T ss_pred CC--Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccC
Confidence 22 56778888655 3444444579999532 2 1222223334334489999999988888888776655554444
Q ss_pred CC
Q 002494 663 DG 664 (915)
Q Consensus 663 ~~ 664 (915)
.|
T Consensus 410 sG 411 (545)
T KOG1272|consen 410 SG 411 (545)
T ss_pred CC
Confidence 44
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-12 Score=138.20 Aligned_cols=402 Identities=12% Similarity=0.103 Sum_probs=245.1
Q ss_pred eeeecCCCcccEEEEec-CCCCEEEEEEcCC-----------CCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccC
Q 002494 328 NVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQ-----------QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 395 (915)
Q Consensus 328 ~~~~~d~~~~~~~~~l~-h~~~V~~v~fspd-----------~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 395 (915)
.+...|..+.+.++.+. |...|+.+.|.|. ...++|++...|.|.+||+..+..+..
T Consensus 36 lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~----------- 104 (1062)
T KOG1912|consen 36 LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW----------- 104 (1062)
T ss_pred eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh-----------
Confidence 34556777888899998 8999999999873 234678888899999999998765532
Q ss_pred cccccccccCCCccCeEEEEEcC---CC-CEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEE
Q 002494 396 SMPLQNALLNDAAISVNRCVWGP---DG-LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 471 (915)
Q Consensus 396 ~~~~~~~~~~~~~~~v~~~~~sp---d~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~ 471 (915)
+..|..++..+.|-+ +. ..|+.-.....+.+|+..+|+.+. ..........|+.+.|-+.. .+.
T Consensus 105 --------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DPfd~r-h~~ 172 (1062)
T KOG1912|consen 105 --------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDPFDSR-HFC 172 (1062)
T ss_pred --------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcceeeeeeCCCCcc-eEE
Confidence 566888899999877 34 466777778899999999997654 33334456777888886655 455
Q ss_pred EEeCCCcEEEEEcCC-------CeeEEEecCCCC------------CE-----------E--EEEeecCCCccEEEEEeC
Q 002494 472 TCGDDKMIKVWDVVA-------GRKQYTFEGHEA------------PV-----------Y--SVCPHHKESIQFIFSTAI 519 (915)
Q Consensus 472 s~~~d~~i~vwd~~~-------~~~~~~~~~~~~------------~v-----------~--~i~~~~~~~~~~l~s~~~ 519 (915)
.-+..|.+.+.+.-. |+..+.-..|.. .+ . ..+|+|.- +.++....
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~--rn~lfi~~ 250 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW--RNILFITF 250 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh--hceEEEEe
Confidence 555567777665431 222222222222 00 0 12345543 34555566
Q ss_pred CCeEEEEecCCCCceeEecCCCCcEEEEEECCCCC--EEEEEeecCCCCceEEEEECCCC----------------eeEE
Q 002494 520 DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT--RLFSCGTSKEGESHLVEWNESEG----------------AIKR 581 (915)
Q Consensus 520 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~--~l~~~~~~~~~~~~i~~wd~~~~----------------~~~~ 581 (915)
...+.++|++-..+........+.+.-+.+-|+++ .+++... +|.+.+|-.+.. ..+.
T Consensus 251 prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~----nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~ 326 (1062)
T KOG1912|consen 251 PRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHS----NGRLTIRVRKEEPTEFKKPNASLSMDLGEQVH 326 (1062)
T ss_pred ccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEec----CCeEEEEEeeccCccccccchhhccccccceE
Confidence 78899999998888777777777666777778765 3555443 777888876541 1111
Q ss_pred EecCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceEEE-----------Ec-----------------C-CCC
Q 002494 582 TYSGFRKRSLGVVQFDTT-RNRFLAAGDEFQIKFWDMDNMNMLTT-----------VD-----------------A-DGG 631 (915)
Q Consensus 582 ~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~~-----------~~-----------------~-~~~ 631 (915)
.+..-...........|. .+.++.--.+|.+.+|.+.+++.-.. +. . .++
T Consensus 327 ~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h 406 (1062)
T KOG1912|consen 327 VVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSH 406 (1062)
T ss_pred EEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCC
Confidence 111111111122223343 23333344677788888875432110 00 0 001
Q ss_pred CCCcceEEEc-----------CCC-------CEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCce
Q 002494 632 LPASPRLRFN-----------KEG-------SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTI 693 (915)
Q Consensus 632 ~~~v~~v~~s-----------~~~-------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 693 (915)
....++.... |.| .++|.|...|+|.++|+.++ .+.+.+.-|...|..+.|... .
T Consensus 407 ~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~-~v~~~fsvht~~VkgleW~g~------s 479 (1062)
T KOG1912|consen 407 SSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN-AVAASFSVHTSLVKGLEWLGN------S 479 (1062)
T ss_pred CCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch-hhhhhhcccccceeeeeeccc------e
Confidence 1112222211 122 26889999999999999998 778888888888877655521 1
Q ss_pred eeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCC-CceeEeecCCCCCccceeEeecCCccCC
Q 002494 694 NALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAA 772 (915)
Q Consensus 694 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~~~~~~~~~~~~~~~~~~~h~ 772 (915)
+++..+. | --.=+++.- +.+.+-++.+ +.......+++ ...
T Consensus 480 slvSfsy--------------------------------s--~~n~~sg~vrN~l~vtdLrt---Glsk~fR~l~~-~de 521 (1062)
T KOG1912|consen 480 SLVSFSY--------------------------------S--HVNSASGGVRNDLVVTDLRT---GLSKRFRGLQK-PDE 521 (1062)
T ss_pred eEEEeee--------------------------------c--cccccccceeeeEEEEEccc---ccccccccCCC-CCc
Confidence 1111110 0 000011111 5566666664 22222222222 256
Q ss_pred CceEEEEEecCCceEEEeeccceeEEeeccc
Q 002494 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (915)
Q Consensus 773 ~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~ 803 (915)
.+|+.+..|..|+||+..-.|.-+.+|++..
T Consensus 522 spI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 522 SPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred CcceeeeecccCceEEEEecccchHHHhhcc
Confidence 7899999999999999999999999999854
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-12 Score=143.12 Aligned_cols=237 Identities=9% Similarity=0.024 Sum_probs=152.6
Q ss_pred eeecCCCcccEEEEecCCCCEEEEEEcCCCCeEEEEEe--CCCcEEEEEcCCCceecccceeeeecccCcccccccccCC
Q 002494 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (915)
Q Consensus 329 ~~~~d~~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (915)
+|..|...........+...+.+.+|||||+.++++.. .+..|.+|++.+++.... ..
T Consensus 181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l--------------------~~ 240 (429)
T PRK03629 181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV--------------------AS 240 (429)
T ss_pred EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc--------------------cC
Confidence 34444333333333446778999999999997655432 235799999988764321 11
Q ss_pred CccCeEEEEEcCCCCEEEEE-ECCC--eEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEe-CCCc--EE
Q 002494 407 AAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKM--IK 480 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~-~d~~--i~ 480 (915)
..+.+..++|+|||+.|+.. +.+| .|++||+++++.. .+..+...+....|+|||+. |+..+ .++. |+
T Consensus 241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy 314 (429)
T PRK03629 241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVY 314 (429)
T ss_pred CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCCE--EEEEeCCCCCceEE
Confidence 22334568999999998875 3344 5889999886532 23344456788999999995 54444 3444 55
Q ss_pred EEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCC---CeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEE
Q 002494 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (915)
Q Consensus 481 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 557 (915)
++|+.++.. ..+..+........|+|++ ++++..+.+ ..|.+||+.++.... +.. ........|+|||+.|+
T Consensus 315 ~~d~~~g~~-~~lt~~~~~~~~~~~SpDG--~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~ 389 (429)
T PRK03629 315 KVNINGGAP-QRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVI 389 (429)
T ss_pred EEECCCCCe-EEeecCCCCccCEEECCCC--CEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEE
Confidence 556666543 3343344445667888754 677665543 358888987765433 222 22334678999999999
Q ss_pred EEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCC
Q 002494 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (915)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~ 599 (915)
.++.++ +...++++++. |.....+.++.+ .+...+|+|-
T Consensus 390 ~~s~~~-~~~~l~~~~~~-G~~~~~l~~~~~-~~~~p~Wsp~ 428 (429)
T PRK03629 390 YSSSQG-MGSVLNLVSTD-GRFKARLPATDG-QVKFPAWSPY 428 (429)
T ss_pred EEEcCC-CceEEEEEECC-CCCeEECccCCC-CcCCcccCCC
Confidence 887643 24568888884 666677777666 6788889873
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=141.34 Aligned_cols=217 Identities=16% Similarity=0.217 Sum_probs=158.0
Q ss_pred ccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEE
Q 002494 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (915)
Q Consensus 403 ~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vw 482 (915)
.+.+|++.|+|++|+.||.+|++|+.|-.+.|||.-..+.+..+ -.+|.+.|.++.|-|....-++++|..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 37899999999999999999999999999999999866555432 3589999999999997655489999999999999
Q ss_pred EcCCC----------eeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCce-------e---EecCCCC
Q 002494 483 DVVAG----------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-------V---DYDAPGN 542 (915)
Q Consensus 483 d~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------~---~~~~~~~ 542 (915)
|+... .....+..|...|..++..|.+. +.+.+++.||+|+-+|++....- . .+...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 98742 23445567888999898877643 78999999999999999863211 0 1111112
Q ss_pred cEEEEEECCCCC-EEEEEeecCCCCceEEEEECCC--------Ce----------eEEEec-CCC-------CC---ceE
Q 002494 543 WCTMMAYSADGT-RLFSCGTSKEGESHLVEWNESE--------GA----------IKRTYS-GFR-------KR---SLG 592 (915)
Q Consensus 543 ~i~~~~~sp~g~-~l~~~~~~~~~~~~i~~wd~~~--------~~----------~~~~~~-~~~-------~~---~v~ 592 (915)
...++..+|... +|++|+. +...++||.+. +. +++-|. +|. .. .++
T Consensus 202 elk~ltisp~rp~~laVGgs----dpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS----DPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred eeeeeeecCCCCceEEecCC----CchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence 567899999765 5566654 67789999431 11 222221 111 01 245
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 002494 593 VVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626 (915)
Q Consensus 593 ~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 626 (915)
-+.|+|+|.-|++.-..-.|+++|+..++....+
T Consensus 278 ~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 278 YVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred EEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 6789999987777555558999999877655443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-12 Score=142.46 Aligned_cols=239 Identities=14% Similarity=0.134 Sum_probs=150.4
Q ss_pred eeeecCCCcccEEEEecCCCCEEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCceecccceeeeecccCcccccccccC
Q 002494 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (915)
Q Consensus 328 ~~~~~d~~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (915)
.++..|...........+...+.+.+|||||+.++++...+ ..|.+||+.+++... +.
T Consensus 177 ~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~ 236 (427)
T PRK02889 177 QLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VA 236 (427)
T ss_pred EEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------ee
Confidence 34444443333333445778899999999998655544322 359999999886432 12
Q ss_pred CCccCeEEEEEcCCCCEEEE-EECCCeEEEEEe--cCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEE
Q 002494 406 DAAISVNRCVWGPDGLMLGV-AFSKHIVHLYTY--NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (915)
Q Consensus 406 ~~~~~v~~~~~spd~~~l~s-~~~dg~i~vwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vw 482 (915)
...+.+.+.+|+|||+.|+. .+.+|...||.+ .++. .. .+..+........|+|||+. +++++..++...+|
T Consensus 237 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy 311 (427)
T PRK02889 237 NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIY 311 (427)
T ss_pred cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEE
Confidence 23345668899999998875 566777666654 4432 22 34445555677899999995 33344445666666
Q ss_pred Ec--CCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCC---eEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEE
Q 002494 483 DV--VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (915)
Q Consensus 483 d~--~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 557 (915)
.+ .+++. ..+..+........|+|+ |++|+..+.++ .|.+||+.++....... ........|+|||+.|+
T Consensus 312 ~~~~~~g~~-~~lt~~g~~~~~~~~SpD--G~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~ 386 (427)
T PRK02889 312 RMPASGGAA-QRVTFTGSYNTSPRISPD--GKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYIL 386 (427)
T ss_pred EEECCCCce-EEEecCCCCcCceEECCC--CCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEE
Confidence 54 44443 222222233445678775 46777766554 59999998765443222 22346789999999999
Q ss_pred EEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCC
Q 002494 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (915)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~ 599 (915)
.++..+ +...+++.+.. |.....+..+.+ .+...+|+|-
T Consensus 387 ~~~~~~-g~~~l~~~~~~-g~~~~~l~~~~g-~~~~p~wsp~ 425 (427)
T PRK02889 387 YATQQG-GRSVLAAVSSD-GRIKQRLSVQGG-DVREPSWGPF 425 (427)
T ss_pred EEEecC-CCEEEEEEECC-CCceEEeecCCC-CCCCCccCCC
Confidence 887543 35568888874 666666655544 5677788874
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-14 Score=143.75 Aligned_cols=232 Identities=13% Similarity=0.160 Sum_probs=190.0
Q ss_pred ccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC
Q 002494 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (915)
Q Consensus 408 ~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~ 487 (915)
.-.-+.+.++.+|++|+.|+..|.+..+|+.+++.... +. -...|.++.|..+.+ +++. ...+.++||| ..|
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E---i~-v~Etv~Dv~~LHneq--~~AV-AQK~y~yvYD-~~G 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE---IN-VMETVRDVTFLHNEQ--FFAV-AQKKYVYVYD-NNG 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeee---ee-hhhhhhhhhhhcchH--HHHh-hhhceEEEec-CCC
Confidence 34567889999999999999999999999999765442 22 234789999998877 5554 4568899999 788
Q ss_pred eeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCc
Q 002494 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (915)
Q Consensus 488 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~ 567 (915)
..++.++.| ..|..+.|.|.. -+|++++..|.++--|+.+++.+..+....+.+..++-+|-+..+-+|.. .|
T Consensus 201 tElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nG 273 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NG 273 (545)
T ss_pred cEEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cc
Confidence 888888755 568889998865 57888889999999999999988888877888888999998877777653 88
Q ss_pred eEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEE
Q 002494 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647 (915)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 647 (915)
+|.+|.....+++..+..|.+ +|.++++.++|++++++|.|..++|||+++-..+.++... . +...+++|..|. |
T Consensus 274 tVSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-~--~a~~ls~Sqkgl-L 348 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-H--PASNLSLSQKGL-L 348 (545)
T ss_pred eEEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC-C--Cccccccccccc-e
Confidence 999999999999999999998 9999999999999999999999999999988777766552 2 567788987663 3
Q ss_pred EEEeCCCcEEEEE
Q 002494 648 AVTTSDNGIKILA 660 (915)
Q Consensus 648 ~s~~~dg~i~iwd 660 (915)
+++....|.||.
T Consensus 349 -A~~~G~~v~iw~ 360 (545)
T KOG1272|consen 349 -ALSYGDHVQIWK 360 (545)
T ss_pred -eeecCCeeeeeh
Confidence 334445699995
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=134.96 Aligned_cols=251 Identities=10% Similarity=0.115 Sum_probs=168.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeE---EeecccCCeeEEEE-----ecCCCeEEEEEEeCCCcEEE
Q 002494 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL---EIDAHVGGVNDIAF-----AHPNKQLCIVTCGDDKMIKV 481 (915)
Q Consensus 410 ~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~h~~~v~~~~~-----s~~~~~~~l~s~~~d~~i~v 481 (915)
.+....++-.|++|+..-. ..+++|+...+..+.... .+. ....+|-+| .|.+-. ++.|-..|.+.+
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~--gt~P~cHdfn~~~a~~~g~d--llIGf~tGqvq~ 199 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYK--GTSPTCHDFNSFTATPKGLD--LLIGFTTGQVQL 199 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhccc--CCCCceecccccccCCCCcc--eEEeeccCceEE
Confidence 3444555556777776533 468888887543322110 111 112333344 244543 666777888988
Q ss_pred EEcCCCeeEEEec----CCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEE
Q 002494 482 WDVVAGRKQYTFE----GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (915)
Q Consensus 482 wd~~~~~~~~~~~----~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 557 (915)
.|....+..+.+. -....|+++.|-|..+ ..++.+-.+|.+.+||..... ...-.+....+++..+.
T Consensus 200 idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~-~~Fl~a~~sGnlyly~~~~~~--------~~t~p~~~~~k~~~~f~ 270 (636)
T KOG2394|consen 200 IDPINFEVSKLFNEERLINKSSVTCIKWVPGSD-SLFLVAHASGNLYLYDKEIVC--------GATAPSYQALKDGDQFA 270 (636)
T ss_pred ecchhhHHHHhhhhcccccccceEEEEEEeCCC-ceEEEEEecCceEEeeccccc--------cCCCCcccccCCCCeeE
Confidence 8866532211111 1347899999999765 578888899999999863111 00111122234555554
Q ss_pred EEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcce
Q 002494 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (915)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (915)
.... . ...+..++..+.-..+ .|+..+|+|||++||+.+.||.++|+|..+.+++..++..-+ ...|
T Consensus 271 i~t~-------k---sk~~rNPv~~w~~~~g-~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG--GLLC 337 (636)
T KOG2394|consen 271 ILTS-------K---SKKTRNPVARWHIGEG-SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG--GLLC 337 (636)
T ss_pred Eeee-------e---ccccCCccceeEeccc-cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc--ceEE
Confidence 3321 0 0111234444443344 788999999999999999999999999999888877766544 7899
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCC
Q 002494 638 LRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISS 688 (915)
Q Consensus 638 v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 688 (915)
++|||||++|++|+.|--|.||.+..+ +++..-.+|..-|..+++.++.+
T Consensus 338 vcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDpytt 387 (636)
T KOG2394|consen 338 VCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDPYTT 387 (636)
T ss_pred EEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeeccccc
Confidence 999999999999999999999999998 88899999999999999997654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-10 Score=116.79 Aligned_cols=140 Identities=9% Similarity=0.077 Sum_probs=94.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 002494 590 SLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668 (915)
Q Consensus 590 ~v~~~~~sp~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 668 (915)
.|.-..+.-+++-++.|..|| .+-|+|..+++....... .+.|.++..+++|++++++.....+.+.|+.+|. .
T Consensus 361 ~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~---lg~I~av~vs~dGK~~vvaNdr~el~vididngn--v 435 (668)
T COG4946 361 GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD---LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN--V 435 (668)
T ss_pred ceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC---ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC--e
Confidence 456666666667788888888 899999998765444333 2378999999999999999999999999999984 2
Q ss_pred eeccC-CCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCC---
Q 002494 669 RMLEG-RAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV--- 744 (915)
Q Consensus 669 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~--- 744 (915)
+.+.. ..+-+ +++.++|+++++|.+--
T Consensus 436 ~~idkS~~~lI-------------------------------------------------tdf~~~~nsr~iAYafP~gy 466 (668)
T COG4946 436 RLIDKSEYGLI-------------------------------------------------TDFDWHPNSRWIAYAFPEGY 466 (668)
T ss_pred eEeccccccee-------------------------------------------------EEEEEcCCceeEEEecCcce
Confidence 22221 11111 23467788888887643
Q ss_pred --CceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEee
Q 002494 745 --DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA 791 (915)
Q Consensus 745 --~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~ 791 (915)
..|+++|+.. ..... .+. ..+.=.+-+|.|||++|...+
T Consensus 467 ~tq~Iklydm~~---~Kiy~-vTT----~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 467 YTQSIKLYDMDG---GKIYD-VTT----PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eeeeEEEEecCC---CeEEE-ecC----CcccccCcccCCCCcEEEEEe
Confidence 5789999874 22222 221 222234567888998884443
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.3e-11 Score=115.54 Aligned_cols=239 Identities=10% Similarity=0.088 Sum_probs=163.0
Q ss_pred CEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEE-
Q 002494 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA- 426 (915)
Q Consensus 348 ~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~- 426 (915)
....++|+.|.. -+++|. |.-.+||+.+.-+...+.. .+.+.+.-+..---.++||..
T Consensus 7 ~~lsvs~NQD~S-cFava~-~~Gfriyn~~P~ke~~~r~-------------------~~~~G~~~veMLfR~N~laLVG 65 (346)
T KOG2111|consen 7 KTLSVSFNQDHS-CFAVAT-DTGFRIYNCDPFKESASRQ-------------------FIDGGFKIVEMLFRSNYLALVG 65 (346)
T ss_pred ceeEEEEccCCc-eEEEEe-cCceEEEecCchhhhhhhc-------------------cccCchhhhhHhhhhceEEEec
Confidence 445599999987 466665 5568999987643322111 111112112222223455443
Q ss_pred ECC------CeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcC-CCeeEEEecCCCCC
Q 002494 427 FSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYTFEGHEAP 499 (915)
Q Consensus 427 ~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~ 499 (915)
+.+ ..|.|||-....++. .+ ....+|.++.+.++ .++..- .+.|+||... +.+.++.+.....+
T Consensus 66 Gg~~pky~pNkviIWDD~k~~~i~---el-~f~~~I~~V~l~r~----riVvvl-~~~I~VytF~~n~k~l~~~et~~NP 136 (346)
T KOG2111|consen 66 GGSRPKYPPNKVIIWDDLKERCII---EL-SFNSEIKAVKLRRD----RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP 136 (346)
T ss_pred CCCCCCCCCceEEEEecccCcEEE---EE-EeccceeeEEEcCC----eEEEEe-cCeEEEEEcCCChhheeeeecccCC
Confidence 322 579999944443333 33 24678999999876 344443 5789999987 45556666543322
Q ss_pred EEEEEeecCCCccEEEEEe-CCCeEEEEecCCCCc--eeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCC
Q 002494 500 VYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (915)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~ 576 (915)
=--++..|..+..+|+.-+ .-|.|++-|+..... ...+..|...|.+++.+-+|..+|+++. ....|++||..+
T Consensus 137 kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt---kGTLIRIFdt~~ 213 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST---KGTLIRIFDTED 213 (346)
T ss_pred CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc---CcEEEEEEEcCC
Confidence 2233444544445666544 468999999987655 5778889999999999999999999985 344699999999
Q ss_pred CeeEEEecCC-CCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 002494 577 GAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (915)
Q Consensus 577 ~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 619 (915)
|..+..++.. ....|.+++|||+..+|+++|+.|+++|+.++.
T Consensus 214 g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 214 GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 9999988643 333899999999999999999999999999875
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-12 Score=143.00 Aligned_cols=237 Identities=12% Similarity=0.111 Sum_probs=151.8
Q ss_pred eeecCCCcccEEEEecCCCCEEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCceecccceeeeecccCcccccccccCC
Q 002494 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (915)
Q Consensus 329 ~~~~d~~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (915)
++.+|...........+...+.+.+|||||++++++... +..|.+||+.+++... +..
T Consensus 186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~ 245 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VAS 245 (433)
T ss_pred EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------ecc
Confidence 444444333334444577889999999999965554322 3469999998876432 122
Q ss_pred CccCeEEEEEcCCCCEEEE-EECCC--eEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCc--EEE
Q 002494 407 AAISVNRCVWGPDGLMLGV-AFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--IKV 481 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~l~s-~~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~--i~v 481 (915)
..+...+.+|+|||+.|+. .+.+| .|++||+.+++. . .+..+.......+|+|||+. ++++...++. |++
T Consensus 246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~---~lt~~~~~~~~~~~spDG~~-l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-T---RLTNHFGIDTEPTWAPDGKS-IYFTSDRGGRPQIYR 320 (433)
T ss_pred CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-E---ECccCCCCccceEECCCCCE-EEEEECCCCCceEEE
Confidence 3334557899999998864 44554 699999988653 2 34445555678899999995 3333434454 677
Q ss_pred EEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCC---eEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEE
Q 002494 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (915)
Q Consensus 482 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 558 (915)
+|+.+++.. .+..+.......+|+|++ ++|+..+.++ .|.+||+.++... .+. +........|+|||++++.
T Consensus 321 ~dl~~g~~~-~lt~~g~~~~~~~~SpDG--~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~ 395 (433)
T PRK04922 321 VAASGGSAE-RLTFQGNYNARASVSPDG--KKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLY 395 (433)
T ss_pred EECCCCCeE-EeecCCCCccCEEECCCC--CEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEE
Confidence 777666543 232233344567888754 6776654432 5899998766544 222 2223456799999999887
Q ss_pred EeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcC
Q 002494 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (915)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp 598 (915)
.+.. .+...+++++.. +.....+..+.+ .+...+|+|
T Consensus 396 ~s~~-~g~~~L~~~~~~-g~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 396 ATRE-GGRGVLAAVSTD-GRVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEec-CCceEEEEEECC-CCceEEcccCCC-CCCCCccCC
Confidence 7654 346779999986 445555654444 566777876
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.4e-12 Score=129.64 Aligned_cols=316 Identities=11% Similarity=0.179 Sum_probs=203.5
Q ss_pred cceeecCCCCCceeeec------CCCcccEEEEecCCCCEEEEEEcCCCCeEEEEEeC-----------CCcEEEEEcCC
Q 002494 316 DEVSFAGVAHTPNVYSQ------DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN-----------VGDISLWEVGS 378 (915)
Q Consensus 316 ~~~~~s~~g~~~~~~~~------d~~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~-----------dg~v~iwd~~~ 378 (915)
.-+.|||-|.+++..-. .......++.+.|. .|.-+.|||+.+| |+|=+. ...++|||+.+
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkY-LVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEKY-LVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccce-EEEecCCccccCcccCCCceEEEEEccc
Confidence 35789999999876543 33455566777776 5899999999986 666331 24699999999
Q ss_pred CceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeE
Q 002494 379 RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVND 458 (915)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~ 458 (915)
|...+...+ +.+....-.-..||.|++++|.-.. ..|.||+..+-..+. ...+ .-..|..
T Consensus 292 G~lkrsF~~----------------~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld-~Ksl--ki~gIr~ 351 (698)
T KOG2314|consen 292 GLLKRSFPV----------------IKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLD-KKSL--KISGIRD 351 (698)
T ss_pred cchhcceec----------------cCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeec-cccc--CCccccC
Confidence 987764322 1112222234689999999998776 568898866532221 0011 2346888
Q ss_pred EEEecCCCeEEEEEEeC-----CCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEE----------eCCCeE
Q 002494 459 IAFAHPNKQLCIVTCGD-----DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST----------AIDGKI 523 (915)
Q Consensus 459 ~~~s~~~~~~~l~s~~~-----d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~----------~~dg~i 523 (915)
..|+|.+. +||--.. -..+.+-.+.+++.+++-.-+ .|..+.++...+|.+|+.- +.-..+
T Consensus 352 FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlf--nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~ 427 (698)
T KOG2314|consen 352 FSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLF--NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNL 427 (698)
T ss_pred cccCCCcc--eEEEEcccccCCcceEEEEecCccceeeeccce--eeeccEEEeccCCcEEEEEEEeeccccccceEeeE
Confidence 99999987 5554322 134666677777666654433 3445555555566777642 222235
Q ss_pred EEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCC-C---eeEEEecCCCCCceEEEEEcCC
Q 002494 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-G---AIKRTYSGFRKRSLGVVQFDTT 599 (915)
Q Consensus 524 ~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~-~---~~~~~~~~~~~~~v~~~~~sp~ 599 (915)
.|+.++....+...-.-...|...+|-|.|..+++.+.. ....++.+|.+++ + +.+..+.. ...+.+.|+|.
T Consensus 428 eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPk 503 (698)
T KOG2314|consen 428 EIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPK 503 (698)
T ss_pred EEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCC
Confidence 666666655554444445678899999999988766542 2356788888763 2 23333333 25678999999
Q ss_pred CCEEEEEe---CCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeC------CCcEEEEEcCC
Q 002494 600 RNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSD 663 (915)
Q Consensus 600 ~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~------dg~i~iwd~~~ 663 (915)
|++++.++ ..|.+.++|+....... .....+. ..+.+.|.|.|+|+++++. |..-++|++..
T Consensus 504 G~fvvva~l~s~~g~l~F~D~~~a~~k~-~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 504 GRFVVVAALVSRRGDLEFYDTDYADLKD-TASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred CcEEEEEEecccccceEEEecchhhhhh-ccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 99988754 57899999998522221 1111221 4678999999999999986 44566676653
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8e-12 Score=122.89 Aligned_cols=197 Identities=13% Similarity=0.184 Sum_probs=141.3
Q ss_pred CCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecC-CCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCC
Q 002494 454 GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG 532 (915)
Q Consensus 454 ~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 532 (915)
-.+..++|++.-. .++++..|-.|++||-.. ++...++. ....|++++|-|... ..++.|+. +-|.+|..+...
T Consensus 99 ~dlr~~aWhqH~~--~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsa-selavgCr-~gIciW~~s~tl 173 (445)
T KOG2139|consen 99 IDLRGVAWHQHII--AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSA-SELAVGCR-AGICIWSDSRTL 173 (445)
T ss_pred cceeeEeechhhh--hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCc-ceeeeeec-ceeEEEEcCccc
Confidence 3577889988554 688899999999999655 55555543 456799999999754 46666665 457889764321
Q ss_pred ce------------eEecCC-CCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCC
Q 002494 533 SR------------VDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (915)
Q Consensus 533 ~~------------~~~~~~-~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~ 599 (915)
.. ..+... ..+|+++.|.+||..+++++. ++..|.+||..++..+.......+ .+.-+.||||
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~---gsssi~iWdpdtg~~~pL~~~glg-g~slLkwSPd 249 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF---GSSSIMIWDPDTGQKIPLIPKGLG-GFSLLKWSPD 249 (445)
T ss_pred ccccccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc---CcceEEEEcCCCCCcccccccCCC-ceeeEEEcCC
Confidence 11 111212 248999999999999999886 588899999999887655433333 6888999999
Q ss_pred CCEEEEEeCCCcEEEEeCCC-CceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 002494 600 RNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (915)
Q Consensus 600 ~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 663 (915)
|.+|+++.-|+..++|+... .....-.-+.+ .|...+|+|+|.+|..+.. |.-++|.+.-
T Consensus 250 gd~lfaAt~davfrlw~e~q~wt~erw~lgsg---rvqtacWspcGsfLLf~~s-gsp~lysl~f 310 (445)
T KOG2139|consen 250 GDVLFAATCDAVFRLWQENQSWTKERWILGSG---RVQTACWSPCGSFLLFACS-GSPRLYSLTF 310 (445)
T ss_pred CCEEEEecccceeeeehhcccceecceeccCC---ceeeeeecCCCCEEEEEEc-CCceEEEEee
Confidence 99999999999999996543 22222222222 7899999999998877664 4455666553
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-09 Score=128.81 Aligned_cols=379 Identities=11% Similarity=0.112 Sum_probs=227.8
Q ss_pred CccCeEEEEEcCCCCEEEEEECCCeEEEE----EecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEE
Q 002494 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLY----TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~l~s~~~dg~i~vw----d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vw 482 (915)
....|.++.+-++...++.+..+|.|.+. +..+. .+. ....-...|.+++||||+. +++..+.++++.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 55789999999999999999999999999 44432 122 2223466899999999999 67777778887765
Q ss_pred EcCCCee------------------------EEEecCCC------------------CCE----EEEEeecCCCccEEEE
Q 002494 483 DVVAGRK------------------------QYTFEGHE------------------APV----YSVCPHHKESIQFIFS 516 (915)
Q Consensus 483 d~~~~~~------------------------~~~~~~~~------------------~~v----~~i~~~~~~~~~~l~s 516 (915)
+ ++... -..|.|.. +.+ ..+.+++.+||.++++
T Consensus 148 t-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAV 226 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAV 226 (928)
T ss_pred e-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEE
Confidence 3 21111 11111100 001 2334445678899998
Q ss_pred EeC---C---CeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecC---CC
Q 002494 517 TAI---D---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG---FR 587 (915)
Q Consensus 517 ~~~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~~ 587 (915)
.+. . +.+|+|+-+ +..........+--.+++|.|.|++||+... ..+...|.+|. ++|-.-..|.- ..
T Consensus 227 ss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~~ 303 (928)
T PF04762_consen 227 SSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFDPE 303 (928)
T ss_pred EEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCCCC
Confidence 875 3 469999854 3222222222333467899999999998775 33355677776 44544444433 23
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE--EEEcCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 002494 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML--TTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 588 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
...|..+.|++++..||..-.|. |.+|-..+..-- +.+..... ..+..+.|+| +...|...+.+|.+..++..-.
T Consensus 304 ~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~ 381 (928)
T PF04762_consen 304 EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD 381 (928)
T ss_pred CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence 33789999999999999977665 999999886522 33332222 1455699999 5566777777788877665321
Q ss_pred ceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceecc-CCceeeccC
Q 002494 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLV-DVKPRVAED 743 (915)
Q Consensus 665 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~-dg~~la~~~ 743 (915)
...+.. .+| |.-.+++.+
T Consensus 382 -----v~~s~~--------------------------------------------------------~~~~D~g~vaVID 400 (928)
T PF04762_consen 382 -----VSRSPG--------------------------------------------------------SSPNDNGTVAVID 400 (928)
T ss_pred -----EEecCC--------------------------------------------------------CCccCceEEEEEe
Confidence 100000 001 111233333
Q ss_pred CCceeEeecCCCCC--ccceeEeecCCccCCCceEEEEEecCCceEEEeeccceeEEeecccccCCCCCCccccccceee
Q 002494 744 VDKIKSWRIPDISD--PSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLW 821 (915)
Q Consensus 744 ~~~v~iw~~~~~~~--~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~ 821 (915)
..++.+-.+....- +.....+.+ ...|.+++|++++..+++..+||.+.+|.++............. .
T Consensus 401 G~~lllTpf~~a~VPPPMs~~~l~~-----~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~-----~ 470 (928)
T PF04762_consen 401 GNKLLLTPFRRAVVPPPMSSYELEL-----PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL-----S 470 (928)
T ss_pred CCeEEEecccccCCCchHhceEEcC-----CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh-----h
Confidence 35566655543221 223333333 45799999999998899999999999998766432210000000 0
Q ss_pred cCCCCCceeccCCCCCCCCCceeEEEEecCCCeEEEec-C---CeeEEeeccCC
Q 002494 822 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G---GKVSLFNMMTF 871 (915)
Q Consensus 822 ~~~~~~~~~~~~~~~~h~~~~I~~l~~S~dg~~L~s~s-d---~~v~vw~l~t~ 871 (915)
.+............ - ...+..++|..++.+++... + +.+.++++...
T Consensus 471 ~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (928)
T PF04762_consen 471 SISLDSMDISDSEL--P-LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS 521 (928)
T ss_pred hccccccccccccc--c-cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence 00000000000000 1 45677899999888877665 4 45888887544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-11 Score=134.74 Aligned_cols=219 Identities=11% Similarity=0.095 Sum_probs=149.4
Q ss_pred CeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEe---CCCcEEEEEcCCCeeEEEecCCCCCEEEEEee
Q 002494 430 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG---DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (915)
Q Consensus 430 g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 506 (915)
..|+++|..+.. .+ .+..|...+.+.+|+|||+. |+..+ .+..|++||+.+++.. .+..+...+....|+
T Consensus 182 ~~l~~~d~dg~~-~~---~lt~~~~~v~~p~wSpDG~~--lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~S 254 (435)
T PRK05137 182 KRLAIMDQDGAN-VR---YLTDGSSLVLTPRFSPNRQE--ITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFS 254 (435)
T ss_pred eEEEEECCCCCC-cE---EEecCCCCeEeeEECCCCCE--EEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEEC
Confidence 478899986543 22 45567889999999999995 44443 3468999999888653 444566677788898
Q ss_pred cCCCccEEEEEeCCCe--EEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEec
Q 002494 507 HKESIQFIFSTAIDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (915)
Q Consensus 507 ~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (915)
|++. .++++.+.++. |.+||+.++.. ..+..+........|+|||+.++..+. .++...|+++|+.++.... +.
T Consensus 255 PDG~-~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~-~~g~~~Iy~~d~~g~~~~~-lt 330 (435)
T PRK05137 255 PDGR-KVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESD-RSGSPQLYVMNADGSNPRR-IS 330 (435)
T ss_pred CCCC-EEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEEC-CCCCCeEEEEECCCCCeEE-ee
Confidence 8643 34456666665 66778776543 334434445677899999999987663 3446689999988765543 33
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCC------Cc
Q 002494 585 GFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD------NG 655 (915)
Q Consensus 585 ~~~~~~v~~~~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d------g~ 655 (915)
.... .+....|+|+|+.++..+.+ ..|.+||+.++.. ..+.. .. .+..+.|+|||+.|+..+.+ ..
T Consensus 331 ~~~~-~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~ 405 (435)
T PRK05137 331 FGGG-RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GF--LVEGPTWAPNGRVIMFFRQTPGSGGAPK 405 (435)
T ss_pred cCCC-cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CC--CCCCCeECCCCCEEEEEEccCCCCCcce
Confidence 2233 45668899999999886643 3688899865543 33332 22 46789999999998876653 25
Q ss_pred EEEEEcCCC
Q 002494 656 IKILANSDG 664 (915)
Q Consensus 656 i~iwd~~~~ 664 (915)
+.++++..+
T Consensus 406 L~~~dl~g~ 414 (435)
T PRK05137 406 LYTVDLTGR 414 (435)
T ss_pred EEEEECCCC
Confidence 777787655
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5e-11 Score=122.77 Aligned_cols=315 Identities=9% Similarity=0.054 Sum_probs=205.5
Q ss_pred CCcceeecCCCCCceeee------cCCCcccEEEEecCCCCEEEEEEcCCCCeEEEEEeC---------------CCcEE
Q 002494 314 QSDEVSFAGVAHTPNVYS------QDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN---------------VGDIS 372 (915)
Q Consensus 314 ~~~~~~~s~~g~~~~~~~------~d~~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~---------------dg~v~ 372 (915)
.+..+.+||.|.+++... ++...+..+..+.|. .|..+.|||.++| |.+=+. ++.+.
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~-~V~~~~fSP~~kY-L~tw~~~pi~~pe~e~sp~~~~n~~~ 111 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHP-DVKYLDFSPNEKY-LVTWSREPIIEPEIEISPFTSKNNVF 111 (561)
T ss_pred chhheeecCcchheehhhccceEEccccchhheeeeecC-CceecccCcccce-eeeeccCCccChhhccCCccccCcee
Confidence 455788999998877653 333344455566665 5999999999984 676432 23589
Q ss_pred EEEcCCCceecccceeeeecccCcccccccccCCCccCeE-EEEEcCCCCEEEEEECCCeEEEEEecCCCce-eeeEEee
Q 002494 373 LWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN-RCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEID 450 (915)
Q Consensus 373 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~ 450 (915)
+||..+|..+..... .......+ -+.|+-+.+++|-. ....++|+++ ++... .....+.
T Consensus 112 vwd~~sg~iv~sf~~-----------------~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr 172 (561)
T COG5354 112 VWDIASGMIVFSFNG-----------------ISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR 172 (561)
T ss_pred EEeccCceeEeeccc-----------------cCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc
Confidence 999999987765332 01111134 67899998887765 3457899997 43221 1111111
Q ss_pred cccCCeeEEEEecCCCeEEEEE-----EeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEe-------
Q 002494 451 AHVGGVNDIAFAHPNKQLCIVT-----CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA------- 518 (915)
Q Consensus 451 ~h~~~v~~~~~s~~~~~~~l~s-----~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~------- 518 (915)
...|....|+|.++...|+. .+.++.+++|.+..++.+.+-.-....-..+.|++.+ ++++.--
T Consensus 173 --~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g--~~ll~l~~t~~ksn 248 (561)
T COG5354 173 --PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG--KYLLVLVMTHTKSN 248 (561)
T ss_pred --ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC--ceEEEEEEEeeecc
Confidence 35688899999855423343 4677899999998776554332222222234555543 4443211
Q ss_pred ----CCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEE
Q 002494 519 ----IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 594 (915)
Q Consensus 519 ----~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 594 (915)
....+.++++......... ...++|..++|.|.++.+++++. -....+.++|++.. .+..+... .=+.+
T Consensus 249 KsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g--~~pa~~s~~~lr~N-l~~~~Pe~---~rNT~ 321 (561)
T COG5354 249 KSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISG--YMPASVSVFDLRGN-LRFYFPEQ---KRNTI 321 (561)
T ss_pred cceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEec--ccccceeecccccc-eEEecCCc---ccccc
Confidence 1245778887755444443 45678999999999998887762 24677899999855 44433322 33557
Q ss_pred EEcCCCCEEEEEeC---CCcEEEEeCCCCceEE-EEcCCCCCCCcceEEEcCCCCEEEEEeC------CCcEEEEEcCCC
Q 002494 595 QFDTTRNRFLAAGD---EFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSDG 664 (915)
Q Consensus 595 ~~sp~~~~l~s~~~---dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~s~~~------dg~i~iwd~~~~ 664 (915)
.|+|.+++++.++- -|.+.+||........ .+.+. ..+-+.|+||++++.+... |..|+||++...
T Consensus 322 ~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 322 FFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred cccCcccEEEEecCCccccceEEeccCCceEEEEEeecC----CceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 79999999999774 4689999998654444 55543 3456889999999988753 788999998754
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5e-13 Score=137.75 Aligned_cols=218 Identities=16% Similarity=0.230 Sum_probs=161.6
Q ss_pred EeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEec-CCCCCEEEEEeecCCCccEEEEEeCCCeEEEE
Q 002494 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (915)
Q Consensus 448 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw 526 (915)
.+.||.+-|+++.|+.+|. +|++|+.|-.+.|||.-..+.++.+. +|...|.++.|.|..+...+++|..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 6789999999999999999 89999999999999998888777664 79999999999998888899999999999999
Q ss_pred ecCCCC----------ceeEecCCCCcEEEEEECCCC-CEEEEEeecCCCCceEEEEECCCCeeE----------EEecC
Q 002494 527 LYDYLG----------SRVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIK----------RTYSG 585 (915)
Q Consensus 527 d~~~~~----------~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~~~~~~~~i~~wd~~~~~~~----------~~~~~ 585 (915)
|+...+ ....+..|...|..++-.|++ ..+.+++ +||+|+-+|++....- ..+..
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas----EDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS----EDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEec----CCcceeeecccCCccCCccccccHHHHHhch
Confidence 998522 222344566688888989998 4556666 4899999999863211 11111
Q ss_pred CCCCceEEEEEcCCC-CEEEEEeCCCcEEEEeCCC--------Cc----------eEEEE-cCCC-C--------CCCcc
Q 002494 586 FRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDN--------MN----------MLTTV-DADG-G--------LPASP 636 (915)
Q Consensus 586 ~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~--------~~----------~~~~~-~~~~-~--------~~~v~ 636 (915)
..- ...++.++|.. .+|++|+.|-..++||.+. +. ++..+ .+|- . ...++
T Consensus 199 ~li-elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 199 QLI-ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred hhh-eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence 111 56788999966 4677899999999999431 11 12222 1111 0 01246
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q 002494 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (915)
Q Consensus 637 ~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 672 (915)
-+.|+|+|.-|.+.-....|+++|+..++.....+.
T Consensus 278 ~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~ 313 (758)
T KOG1310|consen 278 YVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFL 313 (758)
T ss_pred EEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecC
Confidence 688999998777776677899999998855554443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-10 Score=124.06 Aligned_cols=283 Identities=12% Similarity=0.163 Sum_probs=184.2
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
......|++|+.... ++|+|+.||.+++..+.+...-...+ .+...+....-..+.+|.+.|..+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCC-eEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEecccccccc
Confidence 345788999999987 57899999999999887643221100 0111111112234789999999999999999999
Q ss_pred EEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEE--EecCCCCCEEE
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYS 502 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~v~~ 502 (915)
++..+|.|.||-+-.|.-.... .-....+.|.+++|+.||.+ ++..-.||.|.|=.+...+ +. .+++ .....
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~k--IcIvYeDGavIVGsvdGNR-IwgKeLkg--~~l~h 161 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGTK--ICIVYEDGAVIVGSVDGNR-IWGKELKG--QLLAH 161 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCcE--EEEEEccCCEEEEeeccce-ecchhcch--heccc
Confidence 9999999999998876543321 11234567999999999994 7777788888776544322 21 1221 12234
Q ss_pred EEeecCCCccEEEEEeCCCeEEEEecCCCC-------ceeE----ecCCCCcEEEEEEC--------CCCCEEEEEeecC
Q 002494 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG-------SRVD----YDAPGNWCTMMAYS--------ADGTRLFSCGTSK 563 (915)
Q Consensus 503 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~----~~~~~~~i~~~~~s--------p~g~~l~~~~~~~ 563 (915)
+.|+++. ..++.+-.+|.+.+||....- +.+. +......+..+.|. ||...++++..
T Consensus 162 v~ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~-- 237 (1189)
T KOG2041|consen 162 VLWSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA-- 237 (1189)
T ss_pred eeecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc--
Confidence 6677654 677778888999999865321 1111 11122235555553 46677888764
Q ss_pred CCCceEEEEECCC-CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCceEEEEcCCCCCC
Q 002494 564 EGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---------FQIKFWDMDNMNMLTTVDADGGLP 633 (915)
Q Consensus 564 ~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~ 633 (915)
+|.+.+..-.+ ..++..-.+ ..+....|+++|..|+++|.+ +.|.+|.. -|+.+.+++..+.
T Consensus 238 --nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~-- 309 (1189)
T KOG2041|consen 238 --NGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS-- 309 (1189)
T ss_pred --CceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--
Confidence 55565554332 333322222 267789999999999998743 35666654 3677888887766
Q ss_pred CcceEEEcCCCCEEEEE
Q 002494 634 ASPRLRFNKEGSLLAVT 650 (915)
Q Consensus 634 ~v~~v~~s~~~~~l~s~ 650 (915)
.|++++|-..|-.+|.+
T Consensus 310 ~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 310 CITGLSWEGTGLRIAIA 326 (1189)
T ss_pred eeeeeEEcCCceEEEEE
Confidence 78999998777655544
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.3e-12 Score=121.59 Aligned_cols=294 Identities=13% Similarity=0.127 Sum_probs=184.4
Q ss_pred CccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCC--ceeeeEEeeccc------------CCeeEEEEecCCCeEEEEE
Q 002494 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHV------------GGVNDIAFAHPNKQLCIVT 472 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~h~------------~~v~~~~~s~~~~~~~l~s 472 (915)
...-|.++.|..+|.+||+|..+|.|.++.-+... +..-...+..|. ..|..+.|.++++...++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34568899999999999999999999998654322 111222333343 3588999999887667788
Q ss_pred EeCCCcEEEEEcCCCeeEE-----EecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCcee-EecCCCCcEEE
Q 002494 473 CGDDKMIKVWDVVAGRKQY-----TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTM 546 (915)
Q Consensus 473 ~~~d~~i~vwd~~~~~~~~-----~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~ 546 (915)
.+.|++|++|.+....... ..++....+.++.. .+.+..|-.+.. .+.. --..|...|++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~--------p~~~~~~~~vea------~prRv~aNaHtyhiNS 169 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL--------PVEGRHDLEVEA------SPRRVYANAHTYHINS 169 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeec--------eeeccccceeee------eeeeeccccceeEeee
Confidence 8999999999986533211 01112222333321 111111111110 0111 11346668999
Q ss_pred EEECCCCCEEEEEeecCCCCceEEEEECCCCee---EEEecCCCC----CceEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 002494 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRK----RSLGVVQFDTTR-NRFLAAGDEFQIKFWDMD 618 (915)
Q Consensus 547 ~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~----~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~ 618 (915)
++++.|+..++++. |-.|.+|++.-... +.-++.+.. ..|++..|+|.. +.++-.+..|+|++.|++
T Consensus 170 IS~NsD~Et~lSAD-----dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR 244 (433)
T KOG1354|consen 170 ISVNSDKETFLSAD-----DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMR 244 (433)
T ss_pred eeecCccceEeecc-----ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeech
Confidence 99999999999874 77899999863221 222232221 268889999965 566678889999999998
Q ss_pred CCceE----EEEcCC----------CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCC
Q 002494 619 NMNML----TTVDAD----------GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSE 684 (915)
Q Consensus 619 ~~~~~----~~~~~~----------~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 684 (915)
...+- ..+... .-...|..+.|+++|+++++-.. -+|++||+.-..+++.++.-|...-..+
T Consensus 245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL--- 320 (433)
T KOG1354|consen 245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL--- 320 (433)
T ss_pred hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH---
Confidence 43211 111111 01235788999999999998765 7899999976657777777776432211
Q ss_pred CCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCC-CceeEeecCC
Q 002494 685 PISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPD 754 (915)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~~~ 754 (915)
.+...++ ..+....+.++-++..+++|+- +-+++|+...
T Consensus 321 -----------c~lYEnD--------------------~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 321 -----------CSLYEND--------------------AIFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred -----------HHHhhcc--------------------chhheeEEEEcCCcceEecccccceEEEecCCC
Confidence 1111111 1122245678888899999998 7779999664
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-11 Score=129.28 Aligned_cols=284 Identities=16% Similarity=0.170 Sum_probs=188.2
Q ss_pred cccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCC-C-CEEEEEeecCCCccEEEEEeCCCeEEEEec
Q 002494 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-A-PVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528 (915)
Q Consensus 451 ~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~-~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~ 528 (915)
.|...-+.|..+|||+. ++++|...-.|++||+.+-... |..|- . .|.-.-++- +-..++.-..|.+|.+...
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsD--D~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSD--DYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEecc--chhhheEeecCceeeehhh
Confidence 46677889999999997 7889999999999998875543 33332 2 333322322 2234555556666665421
Q ss_pred CCCCceeEecCCCCcEEEEEECC-CCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe
Q 002494 529 DYLGSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (915)
Q Consensus 529 ~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 607 (915)
- +.-.....+ ..-..++++. ....++.++ ...|+-+++..|+.+..|..... .++++..++...+|++|+
T Consensus 124 ~--G~hy~~RIP-~~GRDm~y~~~scDly~~gs-----g~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 124 Y--GRHYRTRIP-KFGRDMKYHKPSCDLYLVGS-----GSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGT 194 (703)
T ss_pred c--CeeeeeecC-cCCccccccCCCccEEEeec-----CcceEEEEccccccccccccccc-cceeeeecCccceEEecc
Confidence 1 111111111 1123445543 333444333 22399999999999998887766 899999999999999999
Q ss_pred CCCcEEEEeCCCCceEEEEcCC---------CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcc
Q 002494 608 DEFQIKFWDMDNMNMLTTVDAD---------GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678 (915)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~---------~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 678 (915)
.+|.|.+||.++...+..+... .....|+++.|+.+|-.+++|+.+|.+.|||+.+...++..-.+...++
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi 274 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI 274 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence 9999999999987776666432 2234599999999999999999999999999998854443333332222
Q ss_pred cccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCCCceeEeecCCCCCc
Q 002494 679 NRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDP 758 (915)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~~~v~iw~~~~~~~~ 758 (915)
..+.|. -+.+...+++.....++|||-.+ +
T Consensus 275 ~~l~~~-----------------------------------------------~~~~q~~v~S~Dk~~~kiWd~~~---G 304 (703)
T KOG2321|consen 275 KKLDWQ-----------------------------------------------DTDQQNKVVSMDKRILKIWDECT---G 304 (703)
T ss_pred eeeccc-----------------------------------------------ccCCCceEEecchHHhhhccccc---C
Confidence 222111 01223455555558899999776 3
Q ss_pred cceeEeecCCccCCCceEEEEEecCCceEEEeeccceeEEeeccc
Q 002494 759 SQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (915)
Q Consensus 759 ~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~ 803 (915)
.....+. ....++.+++-|++-.++++..++.+..|=++.
T Consensus 305 k~~asiE-----pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 305 KPMASIE-----PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred Cceeecc-----ccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 3333222 455699999999999889999888776665544
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-11 Score=119.13 Aligned_cols=263 Identities=12% Similarity=0.148 Sum_probs=175.4
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeeccc-CcccccccccCCCccCeEEEEEcCCCC--
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISA-ASMPLQNALLNDAAISVNRCVWGPDGL-- 421 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~spd~~-- 421 (915)
..+-|.++.|...|. +||+|..+|.|.++.-.....- .+.++...+ ..+.+....--.-...|..+.|.++++
T Consensus 24 eadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~~---ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYKG---EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred hhcceeeEEeecccc-eEeecCCCCeEEEeeccccccc---ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 355799999999998 5899999999999975433210 111111110 001111111112346788999999765
Q ss_pred EEEEEECCCeEEEEEecCCCcee------------------e--------------eE-EeecccCCeeEEEEecCCCeE
Q 002494 422 MLGVAFSKHIVHLYTYNPTGELR------------------Q--------------HL-EIDAHVGGVNDIAFAHPNKQL 468 (915)
Q Consensus 422 ~l~s~~~dg~i~vwd~~~~~~~~------------------~--------------~~-~~~~h~~~v~~~~~s~~~~~~ 468 (915)
.++..+.|.+|++|.+....... . .. --.+|+--|+++.++.|..
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-- 177 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-- 177 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--
Confidence 67778889999999876422111 0 00 0125777899999999988
Q ss_pred EEEEEeCCCcEEEEEcCCCee---EEEecCC-----CCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCc------e
Q 002494 469 CIVTCGDDKMIKVWDVVAGRK---QYTFEGH-----EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS------R 534 (915)
Q Consensus 469 ~l~s~~~d~~i~vwd~~~~~~---~~~~~~~-----~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~ 534 (915)
.++++ .|=.|.+|++.-... +..++.+ ..-|++..|+|.. .+.++..+..|+|++.|++.... .
T Consensus 178 t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~-cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 178 TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH-CNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH-ccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 45554 578899999863221 2233332 2457788899874 47889999999999999984321 0
Q ss_pred eE----------ecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEEC-CCCeeEEEecCCCC-----------Cc--
Q 002494 535 VD----------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE-SEGAIKRTYSGFRK-----------RS-- 590 (915)
Q Consensus 535 ~~----------~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~-~~~~~~~~~~~~~~-----------~~-- 590 (915)
.. +..--..|..+.|+++|+++++-. -.++++||+ ...+++.+++.|.. ..
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~If 330 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIF 330 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchh
Confidence 00 011122688999999999999764 567999999 45677777776542 11
Q ss_pred -eEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 002494 591 -LGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (915)
Q Consensus 591 -v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 620 (915)
-..++|+.++.++++|+..+.+++++...|
T Consensus 331 dKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 331 DKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred heeEEEEcCCcceEecccccceEEEecCCCC
Confidence 234789999999999999999999996544
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-13 Score=147.57 Aligned_cols=259 Identities=15% Similarity=0.178 Sum_probs=171.4
Q ss_pred Eec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCC
Q 002494 342 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (915)
Q Consensus 342 ~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 420 (915)
++. |....+|++||-+.+ .|++|+..|.|+++++.+|....+ ..+|..+|+.+.-+.||
T Consensus 1096 ~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dg 1155 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDG 1155 (1516)
T ss_pred hhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCc
Confidence 344 678899999999997 588999999999999999986654 56799999999999999
Q ss_pred CEEEEEECCC--eEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEe-cC--
Q 002494 421 LMLGVAFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EG-- 495 (915)
Q Consensus 421 ~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~-- 495 (915)
..+++.+.-. ...+|++..-...+. .+ ..-.++.|+.... .-+.|.......+||+.++..+.++ .+
T Consensus 1156 s~~Ltsss~S~PlsaLW~~~s~~~~~H--sf----~ed~~vkFsn~~q--~r~~gt~~d~a~~YDvqT~~~l~tylt~~~ 1227 (1516)
T KOG1832|consen 1156 STQLTSSSSSSPLSALWDASSTGGPRH--SF----DEDKAVKFSNSLQ--FRALGTEADDALLYDVQTCSPLQTYLTDTV 1227 (1516)
T ss_pred ceeeeeccccCchHHHhccccccCccc--cc----cccceeehhhhHH--HHHhcccccceEEEecccCcHHHHhcCcch
Confidence 9887765433 477999876322211 22 2456788987655 3444555567899999998776653 21
Q ss_pred -CCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEEC
Q 002494 496 -HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (915)
Q Consensus 496 -~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~ 574 (915)
....-++..|+|.. .+++ .|| .+||.+....+..+..-.. .-.-.|+|.|..++..+ .+||+
T Consensus 1228 ~~~y~~n~a~FsP~D--~LIl---ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS---------EIwD~ 1290 (1516)
T KOG1832|consen 1228 TSSYSNNLAHFSPCD--TLIL---NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS---------EIWDM 1290 (1516)
T ss_pred hhhhhccccccCCCc--ceEe---eCc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec---------hhhhh
Confidence 22223566788864 3443 344 3699998766655543221 12335899999988775 37999
Q ss_pred CCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe--CC---------------CcEEEEeCCCCceEEEEcCCCCCCCcce
Q 002494 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DE---------------FQIKFWDMDNMNMLTTVDADGGLPASPR 637 (915)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~--~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (915)
++.+.++....-.. ..+.|+..|+.+++.- .| ...+-+|..+.+.+.++.... .+..
T Consensus 1291 RTF~lLh~VP~Ldq---c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R---~~~D 1364 (1516)
T KOG1832|consen 1291 RTFKLLHSVPSLDQ---CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDR---CLLD 1364 (1516)
T ss_pred HHHHHHhcCccccc---eEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeeccc---chhh
Confidence 99888777665432 4577888888766533 00 123344444455555555433 4555
Q ss_pred EEEcCCCCEEEEEe
Q 002494 638 LRFNKEGSLLAVTT 651 (915)
Q Consensus 638 v~~s~~~~~l~s~~ 651 (915)
++-+|...++++-.
T Consensus 1365 lct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1365 LCTEPTDSFLGVIE 1378 (1516)
T ss_pred hhcCCccceEEEEe
Confidence 55566556665543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-10 Score=128.07 Aligned_cols=226 Identities=11% Similarity=0.070 Sum_probs=140.5
Q ss_pred CCccCeEEEEEcCCCCEEE---EEECC--CeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCC---
Q 002494 406 DAAISVNRCVWGPDGLMLG---VAFSK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--- 477 (915)
Q Consensus 406 ~~~~~v~~~~~spd~~~l~---s~~~d--g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~--- 477 (915)
.....+.+-+|||||+.++ +...+ ..|++.++.+++... +....+.....+|+|||+. ++++...+|
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~~d 256 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL-LAFISDRYGNPD 256 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 3455667889999998632 33333 468888988765432 2233445567899999996 333343333
Q ss_pred -cEEEEEcCCC---eeEEEecCCCCCEEEEEeecCCCccEEEEEe-CCCeEEEEe--cCC-CCceeEecCCCCcEEEEEE
Q 002494 478 -MIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWL--YDY-LGSRVDYDAPGNWCTMMAY 549 (915)
Q Consensus 478 -~i~vwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg~i~iwd--~~~-~~~~~~~~~~~~~i~~~~~ 549 (915)
.+..|++..+ +.......+.......+|+|++ +.|+..+ .+|...+|. +.. ......+......+....|
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w 334 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG--TRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW 334 (428)
T ss_pred eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeE
Confidence 3444676642 3232332222344567888854 6666554 567655554 432 2233334444456678899
Q ss_pred CCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCceEEEE
Q 002494 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLTTV 626 (915)
Q Consensus 550 sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~---dg~i~iwd~~~~~~~~~~ 626 (915)
||||+.|+..+.. ++...|++||+.+++......+ .. .+....|+|||+.|+..+. ...|+++|+.+++.....
T Consensus 335 SPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~~-~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 335 SPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-PE-NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-CC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 9999999877643 3456799999998876543332 22 5677899999998876442 457899999887655444
Q ss_pred cCCCCCCCcceEEEcCCC
Q 002494 627 DADGGLPASPRLRFNKEG 644 (915)
Q Consensus 627 ~~~~~~~~v~~v~~s~~~ 644 (915)
...+ .+...+|+|-.
T Consensus 412 ~~~g---~~~~p~Ws~~~ 426 (428)
T PRK01029 412 IGSG---EKRFPSWGAFP 426 (428)
T ss_pred cCCC---cccCceecCCC
Confidence 3322 46678898853
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-11 Score=120.90 Aligned_cols=245 Identities=10% Similarity=0.143 Sum_probs=178.6
Q ss_pred CccCeEEEEEcCCCC--EEEEEECCCeEEEEEecCCCceeee---EEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEE
Q 002494 407 AAISVNRCVWGPDGL--MLGVAFSKHIVHLYTYNPTGELRQH---LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (915)
Q Consensus 407 ~~~~v~~~~~spd~~--~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~v 481 (915)
....|..++|.-|++ .|...+.+..+..+.+......... .......++|..++.. ++ .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 445677888877654 4554546666776666654433221 1222345667777664 44 4888999999999
Q ss_pred EEcCCCe----eEEEecCCCCCEEEEEeecCCCccEEEEEeCC--CeEEEEecCCCCceeEecCC---------CCcEEE
Q 002494 482 WDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID--GKIKAWLYDYLGSRVDYDAP---------GNWCTM 546 (915)
Q Consensus 482 wd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~---------~~~i~~ 546 (915)
|....+. .+..+..+ ..+..+.-++. ...++++|+.. ..+.+||+...+.+..-... .-++++
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~-~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDT-DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCC-CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9987442 23333333 34445544443 33577789998 88999999877544432211 115688
Q ss_pred EEECCC--CCEEEEEeecCCCCceEEEEECCCCe-eEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE
Q 002494 547 MAYSAD--GTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (915)
Q Consensus 547 ~~~sp~--g~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 623 (915)
+.|-+. ...+++++. .+++++||.+.++ ++..|.-... +++++...|.++++++|..-|.+..+|++.++..
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccccC-cceeeeecCCCcEEEEecccchhheecccCceee
Confidence 899887 788898874 7789999998654 6777776665 8999999999999999999999999999999888
Q ss_pred EE-EcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 624 TT-VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 624 ~~-~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
.. +.+..+ .|+++..+|.+.+++++|-|..++|+|+++.
T Consensus 283 g~~~kg~tG--sirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 283 GCGLKGITG--SIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ccccCCccC--CcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 76 666555 8999999999999999999999999999986
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-10 Score=129.67 Aligned_cols=222 Identities=13% Similarity=0.080 Sum_probs=142.6
Q ss_pred CCCccCeEEEEEcCCCCEEEEEECC---CeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCc--E
Q 002494 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--I 479 (915)
Q Consensus 405 ~~~~~~v~~~~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~--i 479 (915)
..+...+.+..|||||+.|+..+.+ ..|++||+.+++... +....+.....+|+|||+. ++++.+.++. |
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~I 288 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPEI 288 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeEE
Confidence 3456788899999999999887543 368899998865321 2222333457899999996 4445566664 7
Q ss_pred EEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEe-CCCe--EEEEecCCCCceeEecCCCCcEEEEEECCCCCEE
Q 002494 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (915)
Q Consensus 480 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 556 (915)
+++|+.+++. ..+..+.......+|+|++ +.++..+ .++. |.++|+.+++... +..........+|+|||+++
T Consensus 289 y~~dl~tg~~-~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 289 YVVDIATKAL-TRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEE
Confidence 7888877764 3444455556778898854 5555544 3444 5556666554332 22233334457899999999
Q ss_pred EEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCceEEEEcCCCCCC
Q 002494 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QIKFWDMDNMNMLTTVDADGGLP 633 (915)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 633 (915)
+..+.. .+...|.++|+.+++... +.... ......|+|+|+.++..+. +| .+++++. ++.....+....+
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g-- 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG-- 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC--
Confidence 887643 234568888988876533 33221 1223579999998887553 33 3777787 4566666655433
Q ss_pred CcceEEEcC
Q 002494 634 ASPRLRFNK 642 (915)
Q Consensus 634 ~v~~v~~s~ 642 (915)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 567788887
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-10 Score=128.39 Aligned_cols=223 Identities=13% Similarity=0.093 Sum_probs=143.8
Q ss_pred CCCccCeEEEEEcCCCCEEEEEECC---CeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCC--cE
Q 002494 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MI 479 (915)
Q Consensus 405 ~~~~~~v~~~~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~--~i 479 (915)
..+...+...+|+|||+.|+..+.+ ..|.+|++.+++... +....+.+....|+|||+. ++++.+.++ .|
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~I 269 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEI 269 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCceE
Confidence 3466788999999999999887643 469999998875422 2233345567899999995 344555555 68
Q ss_pred EEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEe-CCC--eEEEEecCCCCceeEecCCCCcEEEEEECCCCCEE
Q 002494 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (915)
Q Consensus 480 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 556 (915)
++||+.+++.. .+..+........|+|++ +.++..+ .+| .|.++|+.++.... +...........|+|||+.+
T Consensus 270 y~~d~~~~~~~-~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 270 YVMDLASRQLS-RVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEECCCCCeE-EcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 88898877643 454455556667888754 5555444 344 46667776555332 22222334567899999999
Q ss_pred EEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEEcCCCCCC
Q 002494 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVDADGGLP 633 (915)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 633 (915)
+..... ++...|.+||+.+++........ ......|+|+|+.++..+.+ ..++++++.. .....+....+
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g-- 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQG-- 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCC--
Confidence 877642 23456999999887653322221 12245899999998876643 3577777753 44444544333
Q ss_pred CcceEEEcCC
Q 002494 634 ASPRLRFNKE 643 (915)
Q Consensus 634 ~v~~v~~s~~ 643 (915)
.+...+|+|-
T Consensus 419 ~~~~p~ws~~ 428 (430)
T PRK00178 419 EVREPSWSPY 428 (430)
T ss_pred CcCCCccCCC
Confidence 5677888873
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-09 Score=116.66 Aligned_cols=277 Identities=16% Similarity=0.196 Sum_probs=174.6
Q ss_pred CCCceeeecCCCcccE--EEEecCCCCEEEEEEcCCCCeEEEEEeC----CCcEEEEEcCCC--ceecccceeeeecccC
Q 002494 324 AHTPNVYSQDDLTKTV--VRTLNQGSNVMSMDFHPQQQTILLVGTN----VGDISLWEVGSR--ERLAHKPFKVWDISAA 395 (915)
Q Consensus 324 g~~~~~~~~d~~~~~~--~~~l~h~~~V~~v~fspd~~~ll~~gs~----dg~v~iwd~~~~--~~~~~~~~~~~~~~~~ 395 (915)
+..+..+..|..+++. +...........++++|++++ |++... +|.|..|++... +......
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~-LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~--------- 81 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRR-LYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS--------- 81 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSE-EEEEETTSSTTTEEEEEEEETTTTEEEEEEE---------
T ss_pred CCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCE-EEEEEccccCCCCEEEEEECCCcceeEEeee---------
Confidence 3445555555444443 344446777888999999985 555544 578999988764 3221111
Q ss_pred cccccccccCCCccCeEEEEEcCCCCEEEEEEC-CCeEEEEEecCCCceeeeEEeec-----------ccCCeeEEEEec
Q 002494 396 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDA-----------HVGGVNDIAFAH 463 (915)
Q Consensus 396 ~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~-----------h~~~v~~~~~s~ 463 (915)
..........++++|++++|+++.. +|.|.++++.....+........ ......++.|+|
T Consensus 82 --------~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p 153 (345)
T PF10282_consen 82 --------VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP 153 (345)
T ss_dssp --------EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T
T ss_pred --------eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC
Confidence 1113445678999999999999875 89999999988544433221111 124578999999
Q ss_pred CCCeEEEEEEeCCCcEEEEEcCCCe--eE--EEec-CCCCCEEEEEeecCCCccEE-EEEeCCCeEEEEecCCCC-cee-
Q 002494 464 PNKQLCIVTCGDDKMIKVWDVVAGR--KQ--YTFE-GHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLG-SRV- 535 (915)
Q Consensus 464 ~~~~~~l~s~~~d~~i~vwd~~~~~--~~--~~~~-~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~-~~~- 535 (915)
+++. ++++.-....|.+|++.... .. ..+. .....-+.+.|+|++ +++ ++...++.|.++++.... ...
T Consensus 154 dg~~-v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg--~~~Yv~~e~s~~v~v~~~~~~~g~~~~ 230 (345)
T PF10282_consen 154 DGRF-VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDG--KYAYVVNELSNTVSVFDYDPSDGSLTE 230 (345)
T ss_dssp TSSE-EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTS--SEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred CCCE-EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCc--CEEEEecCCCCcEEEEeecccCCceeE
Confidence 9995 34444445589999987654 21 2222 244557789999864 455 555668899999988222 111
Q ss_pred --EecC-----C-CCcEEEEEECCCCCEEEEEeecCCCCceEEEEECC--CCee--EEEecCCCCCceEEEEEcCCCCEE
Q 002494 536 --DYDA-----P-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAI--KRTYSGFRKRSLGVVQFDTTRNRF 603 (915)
Q Consensus 536 --~~~~-----~-~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~--~~~~--~~~~~~~~~~~v~~~~~sp~~~~l 603 (915)
.... . ......++++|||++|+++.. +...|.+|++. +|.. +..+..... ..+.++++|+|++|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr---~~~sI~vf~~d~~~g~l~~~~~~~~~G~-~Pr~~~~s~~g~~l 306 (345)
T PF10282_consen 231 IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR---GSNSISVFDLDPATGTLTLVQTVPTGGK-FPRHFAFSPDGRYL 306 (345)
T ss_dssp EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC---TTTEEEEEEECTTTTTEEEEEEEEESSS-SEEEEEE-TTSSEE
T ss_pred EEEeeeccccccccCCceeEEEecCCCEEEEEec---cCCEEEEEEEecCCCceEEEEEEeCCCC-CccEEEEeCCCCEE
Confidence 1111 1 125789999999999998765 47789999983 3433 333333222 57889999999999
Q ss_pred EEEe-CCCcEEEEeC--CCCceEEE
Q 002494 604 LAAG-DEFQIKFWDM--DNMNMLTT 625 (915)
Q Consensus 604 ~s~~-~dg~i~iwd~--~~~~~~~~ 625 (915)
+++. .++.|.+|++ .+|.+...
T Consensus 307 ~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 307 YVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEEecCCCeEEEEEEeCCCCcEEEe
Confidence 9887 5678999876 46654443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-09 Score=115.33 Aligned_cols=247 Identities=15% Similarity=0.205 Sum_probs=163.4
Q ss_pred cCeEEEEEcCCCCEEEEEEC----CCeEEEEEecCC-CceeeeEEeecccCCeeEEEEecCCCeEEEEEE-eCCCcEEEE
Q 002494 409 ISVNRCVWGPDGLMLGVAFS----KHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVW 482 (915)
Q Consensus 409 ~~v~~~~~spd~~~l~s~~~----dg~i~vwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~-~~d~~i~vw 482 (915)
.....++++|++++|.++.. ++.|..|++... ..+...............++++|+++. ++++ -.+|.+.++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~--l~vany~~g~v~v~ 114 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF--LYVANYGGGSVSVF 114 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE--EEEEETTTTEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE--EEEEEccCCeEEEE
Confidence 34566889999999999877 579999999875 344433333334456778999999994 5555 468999999
Q ss_pred EcCC-CeeEEE---ec----------CCCCCEEEEEeecCCCccEEEEEeC-CCeEEEEecCCCCc-e---eEe-cCCCC
Q 002494 483 DVVA-GRKQYT---FE----------GHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGS-R---VDY-DAPGN 542 (915)
Q Consensus 483 d~~~-~~~~~~---~~----------~~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~-~---~~~-~~~~~ 542 (915)
++.. |..... +. .......++.++|++ +++++... ...|.+|+++.... + ..+ ...+.
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9986 433222 21 123456788888854 56666543 55799999977652 2 112 23455
Q ss_pred cEEEEEECCCCCEEEEEeecCCCCceEEEEECC--CCee--EEEecCC----CC-CceEEEEEcCCCCEEEEEe-CCCcE
Q 002494 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAI--KRTYSGF----RK-RSLGVVQFDTTRNRFLAAG-DEFQI 612 (915)
Q Consensus 543 ~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~--~~~~--~~~~~~~----~~-~~v~~~~~sp~~~~l~s~~-~dg~i 612 (915)
....++|+|+|+++++... ..+.|.++++. ++.. +...... .. .....++++|||++|+++. ..+.|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 7889999999999988764 46778888877 4532 2222211 11 1467899999999988866 56789
Q ss_pred EEEeCC--CCc--eEEEEcCCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcC--CC
Q 002494 613 KFWDMD--NMN--MLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANS--DG 664 (915)
Q Consensus 613 ~iwd~~--~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-~dg~i~iwd~~--~~ 664 (915)
.+|++. +++ .+..+...+. ..+.++++|+|++|+++. .++.|.+|++. +|
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred EEEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence 999994 233 3333333332 468999999999999887 46789999774 55
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-09 Score=105.76 Aligned_cols=289 Identities=11% Similarity=0.120 Sum_probs=176.6
Q ss_pred CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecC
Q 002494 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508 (915)
Q Consensus 429 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~ 508 (915)
+.-|++|++.+...-.....+-.+.+.++-++|+|+++ .|+++..++. .+.|.+..|.++
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~--~LY~v~~~~~------------------~ggvaay~iD~~ 74 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQR--HLYVVNEPGE------------------EGGVAAYRIDPD 74 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCC--EEEEEEecCC------------------cCcEEEEEEcCC
Confidence 46799999985332222223345677889999999998 5777655432 223333333221
Q ss_pred CCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCC-CeeEEE--ecC
Q 002494 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRT--YSG 585 (915)
Q Consensus 509 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~--~~~ 585 (915)
||.+.+.+-. ...+.+.+.++++++|++++++.. +.+.|.++-++. |.+... ...
T Consensus 75 -----------~G~Lt~ln~~--------~~~g~~p~yvsvd~~g~~vf~AnY---~~g~v~v~p~~~dG~l~~~v~~~~ 132 (346)
T COG2706 75 -----------DGRLTFLNRQ--------TLPGSPPCYVSVDEDGRFVFVANY---HSGSVSVYPLQADGSLQPVVQVVK 132 (346)
T ss_pred -----------CCeEEEeecc--------ccCCCCCeEEEECCCCCEEEEEEc---cCceEEEEEcccCCccccceeeee
Confidence 2232222211 112233367788888888887765 356788887754 332111 111
Q ss_pred CCC---------CceEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceEEEEcCC-CCCCCcceEEEcCCCCEEEEEeC-
Q 002494 586 FRK---------RSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTS- 652 (915)
Q Consensus 586 ~~~---------~~v~~~~~sp~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~s~~~- 652 (915)
|.+ .-+....+.|+++++++.. .| +|.+|++..|++...-... .....-+.+.|+|++++....++
T Consensus 133 h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL 211 (346)
T COG2706 133 HTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL 211 (346)
T ss_pred cCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEecc
Confidence 221 0277889999999999865 45 7999999977654332211 11124588999999999888776
Q ss_pred CCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCcee
Q 002494 653 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 732 (915)
Q Consensus 653 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 732 (915)
+++|.+|........+..++.+... |+. |.+ .-...++.+
T Consensus 212 ~stV~v~~y~~~~g~~~~lQ~i~tl-------------P~d------------F~g---------------~~~~aaIhi 251 (346)
T COG2706 212 NSTVDVLEYNPAVGKFEELQTIDTL-------------PED------------FTG---------------TNWAAAIHI 251 (346)
T ss_pred CCEEEEEEEcCCCceEEEeeeeccC-------------ccc------------cCC---------------CCceeEEEE
Confidence 8999999988743334444332211 000 000 001245688
Q ss_pred ccCCceeeccCC--CceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEeecc-ceeEEeeccc
Q 002494 733 LVDVKPRVAEDV--DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN-AVHKLWKWQR 803 (915)
Q Consensus 733 s~dg~~la~~~~--~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~d-g~v~iW~l~~ 803 (915)
++||++|.++.. +.|.+|.++.......+..... - +...-+.+.|+++|++|++.+.| ..+.++.++.
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~-t--eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITP-T--EGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEec-c--CCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 999999999988 7899999986433322222221 1 33346889999999999988886 4677887655
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.4e-11 Score=116.35 Aligned_cols=163 Identities=12% Similarity=0.114 Sum_probs=112.1
Q ss_pred eEEEEecCCCeEEEEEEe--------CCCcEEEEEcCC-CeeEEEecC-CCCCEEEEEeecCCCccEEEEEeCCCeEEEE
Q 002494 457 NDIAFAHPNKQLCIVTCG--------DDKMIKVWDVVA-GRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (915)
Q Consensus 457 ~~~~~s~~~~~~~l~s~~--------~d~~i~vwd~~~-~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw 526 (915)
..+.|+|+|..+++.+.. .-+...+|.++. +.....+.- ..++|.+++|+|+++.-.++.|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467899999863333321 112345555432 233444432 3457999999997642223445567899999
Q ss_pred ecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEE
Q 002494 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (915)
Q Consensus 527 d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 606 (915)
|++ ......+ ....+..+.|+|+|+++++++.+ +..|.+.+||.++.+.+.++... .+..++|+|+|++++++
T Consensus 89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~-n~~G~l~~wd~~~~~~i~~~~~~---~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFG-NLNGDLEFWDVRKKKKISTFEHS---DATDVEWSPDGRYLATA 161 (194)
T ss_pred cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEcc-CCCcEEEEEECCCCEEeeccccC---cEEEEEEcCCCCEEEEE
Confidence 996 3333333 45677899999999999998753 23577999999988888776533 57899999999999997
Q ss_pred e------CCCcEEEEeCCCCceEEEEc
Q 002494 607 G------DEFQIKFWDMDNMNMLTTVD 627 (915)
Q Consensus 607 ~------~dg~i~iwd~~~~~~~~~~~ 627 (915)
. .|+.++||+.. |+.+....
T Consensus 162 ~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EeccceeccccEEEEEec-CeEeEecc
Confidence 6 37889999985 66665543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-10 Score=127.80 Aligned_cols=227 Identities=9% Similarity=0.044 Sum_probs=141.6
Q ss_pred CCCCEEEEEEcCCCCe--EEEEEeCCC--cEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCC
Q 002494 345 QGSNVMSMDFHPQQQT--ILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (915)
Q Consensus 345 h~~~V~~v~fspd~~~--ll~~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 420 (915)
....+..-+|||||+. ++++...+| .|.+.++.+++... +....+.....+|||||
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPRK 242 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCCC
Confidence 5566788899999975 333444443 58888888876432 12233445568999999
Q ss_pred CEEEEEEC-CC----eEEEEEecCCC--ceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEE--EcCC-CeeE
Q 002494 421 LMLGVAFS-KH----IVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW--DVVA-GRKQ 490 (915)
Q Consensus 421 ~~l~s~~~-dg----~i~vwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vw--d~~~-~~~~ 490 (915)
+.|+..+. +| .+.+|++.++. .... ....+.......+|+|||+. ++++...+|...+| ++.. +...
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECcccccce
Confidence 99987663 22 34446766531 2221 12222234567899999995 33344456655555 4432 2334
Q ss_pred EEecCCCCCEEEEEeecCCCccEEEEEeCC---CeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCc
Q 002494 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (915)
Q Consensus 491 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~ 567 (915)
..+..+...+....|+|++ +.|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+..... .+..
T Consensus 320 ~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~-~g~~ 395 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGN-SNES 395 (428)
T ss_pred EEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECC-CCCc
Confidence 4454455566778898864 667665543 368999998776544332 23456789999999998866543 3467
Q ss_pred eEEEEECCCCeeEEEecCCCCCceEEEEEcCCC
Q 002494 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (915)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~ 600 (915)
.|+++|+.+++......+ .+ .+...+|+|-.
T Consensus 396 ~L~~vdl~~g~~~~Lt~~-~g-~~~~p~Ws~~~ 426 (428)
T PRK01029 396 ELYLISLITKKTRKIVIG-SG-EKRFPSWGAFP 426 (428)
T ss_pred eEEEEECCCCCEEEeecC-CC-cccCceecCCC
Confidence 799999988776544432 23 46677888753
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-10 Score=119.98 Aligned_cols=324 Identities=11% Similarity=0.111 Sum_probs=204.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeC-----------CCc
Q 002494 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----------DKM 478 (915)
Q Consensus 410 ~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~-----------d~~ 478 (915)
.=+.+.|||-|.||++-...| |.+|-=.+-..++ .+ .|. .|.-+.|||..+ ||+|-+. ...
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~---RF-~Hp-~Vq~idfSP~Ek--YLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ---RF-YHP-GVQFIDFSPNEK--YLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHH---hc-cCC-CceeeecCCccc--eEEEecCCccccCcccCCCce
Confidence 346789999999999988765 6788643332222 22 354 589999999999 7888643 257
Q ss_pred EEEEEcCCCeeEEEecC--CCCCEEE-EEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCE
Q 002494 479 IKVWDVVAGRKQYTFEG--HEAPVYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (915)
Q Consensus 479 i~vwd~~~~~~~~~~~~--~~~~v~~-i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~ 555 (915)
++|||+.+|.....|.. ....++. ..|+.+ +++++.... ..|.||+..+....-.-...-..|....|+|.++.
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D--dKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~l 360 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD--DKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNL 360 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccC--CceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcce
Confidence 99999999998888765 3333333 356654 467776655 57888987654333333334457889999999998
Q ss_pred EEEEeec-CCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCc-eE
Q 002494 556 LFSCGTS-KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFWDMDNMN-ML 623 (915)
Q Consensus 556 l~~~~~~-~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~----------~dg~i~iwd~~~~~-~~ 623 (915)
||.-+.. .+-...+.+..+.+++.+++-..+.- .=..+.|..+|.+|+.-- .-..+.|+.++... ++
T Consensus 361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV-sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv 439 (698)
T KOG2314|consen 361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV-SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV 439 (698)
T ss_pred EEEEcccccCCcceEEEEecCccceeeeccceee-eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence 8855431 22234577788888877776655543 223466778888888632 11235566665432 23
Q ss_pred EEEcCCCCCCCcceEEEcCCCCEEEEEeC---CCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccC
Q 002494 624 TTVDADGGLPASPRLRFNKEGSLLAVTTS---DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 700 (915)
Q Consensus 624 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 700 (915)
..+.... .|...+|-|.|+.+++-+. ..++.+|.+++...... -|....
T Consensus 440 e~velke---~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~-------lVk~~d------------------ 491 (698)
T KOG2314|consen 440 EVVELKE---SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS-------LVKELD------------------ 491 (698)
T ss_pred eeeecch---heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh-------hhhhhc------------------
Confidence 3333322 6788999999998877654 34577776663210000 000000
Q ss_pred ccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCC----CceeEeecCCCCCccceeEeecCCccCCCceE
Q 002494 701 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV----DKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (915)
Q Consensus 701 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~----~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~ 776 (915)
......+-+||.|++++++.- +.+.++|.+- ..++....+ .....+
T Consensus 492 -----------------------k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~----a~~k~~~~~---eh~~at 541 (698)
T KOG2314|consen 492 -----------------------KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY----ADLKDTASP---EHFAAT 541 (698)
T ss_pred -----------------------ccccceEEEcCCCcEEEEEEecccccceEEEecch----hhhhhccCc---cccccc
Confidence 000123468899999888755 7889999873 233333322 234568
Q ss_pred EEEEecCCceEEEeeccc------eeEEeeccc
Q 002494 777 RLIYTNSGLSLLALASNA------VHKLWKWQR 803 (915)
Q Consensus 777 ~l~~s~d~~~l~~~~~dg------~v~iW~l~~ 803 (915)
.+.|.|.|+|++++++-. --+||++..
T Consensus 542 ~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 542 EVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred cceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 899999999999988743 334565544
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.8e-11 Score=116.12 Aligned_cols=132 Identities=15% Similarity=0.276 Sum_probs=99.2
Q ss_pred eEEEEecCCCCc-eeEecC-CCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCC
Q 002494 522 KIKAWLYDYLGS-RVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (915)
Q Consensus 522 ~i~iwd~~~~~~-~~~~~~-~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~ 599 (915)
...+|.++.... ...+.. ..++|.+++|+|+|+.++++.. ..+..+.+||++ ++.+..+.. . .++.+.|+|+
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g--~~~~~v~lyd~~-~~~i~~~~~--~-~~n~i~wsP~ 111 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYG--SMPAKVTLYDVK-GKKIFSFGT--Q-PRNTISWSPD 111 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEc--cCCcccEEEcCc-ccEeEeecC--C-CceEEEECCC
Confidence 455565543322 223322 3446999999999999876653 235579999997 667777653 2 6788999999
Q ss_pred CCEEEEEeC---CCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeC------CCcEEEEEcCCC
Q 002494 600 RNRFLAAGD---EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSDG 664 (915)
Q Consensus 600 ~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~------dg~i~iwd~~~~ 664 (915)
|+++++++. .|.|.+||+++.+.+...... .++.++|+|||++++++.. |+.++||+.. |
T Consensus 112 G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~----~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G 180 (194)
T PF08662_consen 112 GRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS----DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-G 180 (194)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCEEeeccccC----cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-C
Confidence 999999874 467999999988888776533 4689999999999999874 7889999985 5
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-10 Score=129.62 Aligned_cols=238 Identities=13% Similarity=0.091 Sum_probs=148.2
Q ss_pred eeecCCCcccEEEEecCCCCEEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCceecccceeeeecccCcccccccccCC
Q 002494 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (915)
Q Consensus 329 ~~~~d~~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (915)
++..|...+.......+...+...+|||||++++++...+ ..|.+||+.+++... +..
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~ 240 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITN 240 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccC
Confidence 3333433334444445778899999999999766654333 368999998876432 112
Q ss_pred CccCeEEEEEcCCCCEEEEE-ECCC--eEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCC--cEEE
Q 002494 407 AAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKV 481 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~--~i~v 481 (915)
..+.+...+|+|||+.|+.. +.+| .|++||+.++... .+..+........|+|||+. ++++...++ .|++
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYK 315 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEE
Confidence 23345568999999988754 4444 6888899886432 33445556677899999996 344443443 5777
Q ss_pred EEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeC-CC--eEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEE
Q 002494 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (915)
Q Consensus 482 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 558 (915)
+|+.+++... +...........|+|++ +.++..+. ++ .|.+||+.++....... ........|+|||+.++.
T Consensus 316 ~d~~~g~~~~-lt~~~~~~~~~~~Spdg--~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 316 VNVNGGRAER-VTFVGNYNARPRLSADG--KTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIY 390 (430)
T ss_pred EECCCCCEEE-eecCCCCccceEECCCC--CEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEE
Confidence 8887776433 22122233446787754 56666554 33 47888888765433222 122235689999999987
Q ss_pred EeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCC
Q 002494 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (915)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~ 599 (915)
.+.. .+...+++++.. |...+.+..+.+ .+...+|+|-
T Consensus 391 ~~~~-~g~~~l~~~~~~-g~~~~~l~~~~g-~~~~p~ws~~ 428 (430)
T PRK00178 391 ATRQ-QGRGVLMLVSIN-GRVRLPLPTAQG-EVREPSWSPY 428 (430)
T ss_pred EEec-CCceEEEEEECC-CCceEECcCCCC-CcCCCccCCC
Confidence 7653 345678888886 444445554433 5666778763
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-10 Score=128.83 Aligned_cols=224 Identities=13% Similarity=0.096 Sum_probs=139.7
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEEeCCC--cEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCC
Q 002494 343 LNQGSNVMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (915)
Q Consensus 343 l~h~~~V~~v~fspd~~~ll~~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 420 (915)
+.+...+.+..|||||++++++...++ .|.+||+.+++.... ....+.....+|+|||
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~wSPDG 273 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRFSPDG 273 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeECCCC
Confidence 446778899999999997666544443 588889988764321 1112233467999999
Q ss_pred CEEEEE-ECCCe--EEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCC--cEEEEEcCCCeeEEEecC
Q 002494 421 LMLGVA-FSKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEG 495 (915)
Q Consensus 421 ~~l~s~-~~dg~--i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~ 495 (915)
+.|+.. +.+|. |+++|+.+++. . .+..+.......+|+|||+. +++++..++ .|+++|+.+++... +..
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~-~---~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~ 347 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKAL-T---RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR-LTF 347 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCe-E---ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-Eec
Confidence 988764 55564 77788877543 2 33345556678899999995 344444444 46677877776433 221
Q ss_pred CCCCEEEEEeecCCCccEEEEEeC-CCe--EEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEE
Q 002494 496 HEAPVYSVCPHHKESIQFIFSTAI-DGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (915)
Q Consensus 496 ~~~~v~~i~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~w 572 (915)
........+|+|++ ++++..+. ++. |.++|+.++.... +... .......|+|||+.|+..... ++...++++
T Consensus 348 ~g~~~~~~~~SpDG--~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~-~g~~~l~~~ 422 (448)
T PRK04792 348 EGEQNLGGSITPDG--RSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTY-QGKQVLAAV 422 (448)
T ss_pred CCCCCcCeeECCCC--CEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEec-CCceEEEEE
Confidence 22223446787754 56655544 443 5556766654332 2211 122345899999999877643 345668888
Q ss_pred ECCCCeeEEEecCCCCCceEEEEEcCC
Q 002494 573 NESEGAIKRTYSGFRKRSLGVVQFDTT 599 (915)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~sp~ 599 (915)
+. +|.....+..+.+ .+...+|+|-
T Consensus 423 ~~-~G~~~~~l~~~~g-~~~~p~Wsp~ 447 (448)
T PRK04792 423 SI-DGRFKARLPAGQG-EVKSPAWSPF 447 (448)
T ss_pred EC-CCCceEECcCCCC-CcCCCccCCC
Confidence 87 4666666665544 5677788873
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.3e-10 Score=126.13 Aligned_cols=220 Identities=13% Similarity=0.056 Sum_probs=143.3
Q ss_pred CCCccCeEEEEEcCCCCEEEEEECC---CeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCC--cE
Q 002494 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MI 479 (915)
Q Consensus 405 ~~~~~~v~~~~~spd~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~--~i 479 (915)
..+...+.+.+|+|||++|+.++.+ ..|++||+.+++.. .+..+...+.+++|+|||+. ++++.+.++ .|
T Consensus 186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~i 260 (417)
T TIGR02800 186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPDI 260 (417)
T ss_pred ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCccE
Confidence 3466678899999999999987654 47999999886532 23345556778999999986 444555444 58
Q ss_pred EEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeC-CC--eEEEEecCCCCceeEecCCCCcEEEEEECCCCCEE
Q 002494 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (915)
Q Consensus 480 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l 556 (915)
++||+.++.. ..+..+........|+++ |+.|+..+. ++ .|.++|+.+... ..+.........+.|+|+|+++
T Consensus 261 ~~~d~~~~~~-~~l~~~~~~~~~~~~s~d--g~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 261 YVMDLDGKQL-TRLTNGPGIDTEPSWSPD--GKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEECCCCCE-EECCCCCCCCCCEEECCC--CCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEE
Confidence 8899887754 344445444556678774 466665554 33 577777765543 3333345566788999999999
Q ss_pred EEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceEEEEcCCCCCC
Q 002494 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVDADGGLP 633 (915)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~ 633 (915)
+.+..+. +...|.+||+.++... .+.... ......|+|+|++|+.++.++ .+++.+.. ++....+....+
T Consensus 337 ~~~~~~~-~~~~i~~~d~~~~~~~-~l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g-- 409 (417)
T TIGR02800 337 AFVHREG-GGFNIAVMDLDGGGER-VLTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNG-- 409 (417)
T ss_pred EEEEccC-CceEEEEEeCCCCCeE-EccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCC--
Confidence 8877532 3457999999876543 333222 234568999999988876543 45565544 444455543322
Q ss_pred CcceEEE
Q 002494 634 ASPRLRF 640 (915)
Q Consensus 634 ~v~~v~~ 640 (915)
.+..++|
T Consensus 410 ~~~~~~w 416 (417)
T TIGR02800 410 DVREPAW 416 (417)
T ss_pred CcCCCCC
Confidence 4455555
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-09 Score=122.33 Aligned_cols=215 Identities=13% Similarity=0.119 Sum_probs=142.6
Q ss_pred CeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCC---CcEEEEEcCCCeeEEEecCCCCCEEEEEee
Q 002494 430 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD---KMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (915)
Q Consensus 430 g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 506 (915)
..|.++|..+.. .+ .+..+...+...+|+|||+. ++.++.+ ..|++||+.+++... +..+...+.+++|+
T Consensus 170 ~~l~~~d~~g~~-~~---~l~~~~~~~~~p~~Spdg~~--la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~s 242 (417)
T TIGR02800 170 YELQVADYDGAN-PQ---TITRSREPILSPAWSPDGQK--LAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFS 242 (417)
T ss_pred ceEEEEcCCCCC-CE---EeecCCCceecccCCCCCCE--EEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEEC
Confidence 368888876533 22 34456667899999999994 5544432 479999998886543 33455566778898
Q ss_pred cCCCccEE-EEEeCCC--eEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEe
Q 002494 507 HKESIQFI-FSTAIDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (915)
Q Consensus 507 ~~~~~~~l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (915)
|++ +.| ++.+.++ .|.+||+.+.... .+..+........|+|||+.|+.++. ..+...|+++|+.+++... +
T Consensus 243 pDg--~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~-~~g~~~iy~~d~~~~~~~~-l 317 (417)
T TIGR02800 243 PDG--SKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSD-RGGSPQIYMMDADGGEVRR-L 317 (417)
T ss_pred CCC--CEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEEC-CCCCceEEEEECCCCCEEE-e
Confidence 864 445 4555554 4888888765433 23333334456789999999887653 3345579999998776543 3
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCC---cEE
Q 002494 584 SGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN---GIK 657 (915)
Q Consensus 584 ~~~~~~~v~~~~~sp~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg---~i~ 657 (915)
..+.. ......|+|+|++++.++.++ .|.+||+.++.. ..+.... ......|+|||++|+..+.++ .+.
T Consensus 318 ~~~~~-~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~---~~~~p~~spdg~~l~~~~~~~~~~~l~ 392 (417)
T TIGR02800 318 TFRGG-YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTG---LDESPSFAPNGRMILYATTRGGRGVLG 392 (417)
T ss_pred ecCCC-CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCC---CCCCceECCCCCEEEEEEeCCCcEEEE
Confidence 33333 566789999999999888765 799999987544 3333222 235678999999888887654 344
Q ss_pred EEEc
Q 002494 658 ILAN 661 (915)
Q Consensus 658 iwd~ 661 (915)
+.+.
T Consensus 393 ~~~~ 396 (417)
T TIGR02800 393 LVST 396 (417)
T ss_pred EEEC
Confidence 4443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-09 Score=121.77 Aligned_cols=200 Identities=14% Similarity=0.145 Sum_probs=148.9
Q ss_pred CCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEE
Q 002494 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (915)
Q Consensus 347 ~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~ 426 (915)
+.|....+.-+.+ .++.++.++.+.+||...+.......- + ....-....-+.++++.-++++|
T Consensus 88 ~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~-------~--------er~~l~~~~~~g~s~~~~~i~~g 151 (967)
T KOG0974|consen 88 DWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQS-------D--------ERCTLYSSLIIGDSAEELYIASG 151 (967)
T ss_pred ccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCC-------C--------ceEEEEeEEEEeccCcEEEEEec
Confidence 4455556666665 467778899999999988765532000 0 00001122234467777899999
Q ss_pred ECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEE-EecCCCCCEEEEEe
Q 002494 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSVCP 505 (915)
Q Consensus 427 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~i~~ 505 (915)
+.-+.|.+|+....+... .+.+|.+.|.++.|+.||. ++++.|.|.++++|++.+++... ..-+|+.+|+.+++
T Consensus 152 sv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~ 226 (967)
T KOG0974|consen 152 SVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCF 226 (967)
T ss_pred cccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEe
Confidence 999999999988432221 5779999999999999999 89999999999999999987665 55689999999999
Q ss_pred ecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCC-CcEEEEEECCCCCEEEEEeecCCCCceEEEEECCC
Q 002494 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (915)
Q Consensus 506 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~ 576 (915)
.++ .+++++.|-+.++|+.+... ...+..|. ..+..++..++...+++++. |+.+++||+..
T Consensus 227 ~~n----~i~t~gedctcrvW~~~~~~-l~~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 227 LPN----RIITVGEDCTCRVWGVNGTQ-LEVYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNG 289 (967)
T ss_pred ccc----eeEEeccceEEEEEecccce-ehhhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhc
Confidence 874 79999999999999765333 22444443 47889999888877788774 78899999764
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.9e-09 Score=105.99 Aligned_cols=234 Identities=11% Similarity=0.016 Sum_probs=163.2
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccC-cccccccccCCCccCeEEEE-EcC-CCCEEEEE
Q 002494 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA-SMPLQNALLNDAAISVNRCV-WGP-DGLMLGVA 426 (915)
Q Consensus 350 ~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~sp-d~~~l~s~ 426 (915)
.+=..+.||+++++ +..|.|.+||..+..... .++..+ ..... ......+..-+. |++ +|.+++..
T Consensus 270 Y~R~~nsDGkrIvF--q~~GdIylydP~td~lek------ldI~lpl~rk~k---~~k~~~pskyledfa~~~Gd~ia~V 338 (668)
T COG4946 270 YPRNANSDGKRIVF--QNAGDIYLYDPETDSLEK------LDIGLPLDRKKK---QPKFVNPSKYLEDFAVVNGDYIALV 338 (668)
T ss_pred cccccCCCCcEEEE--ecCCcEEEeCCCcCccee------eecCCccccccc---cccccCHHHhhhhhccCCCcEEEEE
Confidence 34445678998776 457899999998764332 111100 00000 000111111122 444 78899888
Q ss_pred ECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCC-cEEEEEcCCCeeEEEecCCCCCEEEEEe
Q 002494 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-MIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (915)
Q Consensus 427 ~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 505 (915)
|. |...+.+...+-.+. -+|.+.|.-..+.-+++ -++.|..|| .+-|+|..+++ +..+...-+.|.++..
T Consensus 339 SR-GkaFi~~~~~~~~iq-----v~~~~~VrY~r~~~~~e--~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~v 409 (668)
T COG4946 339 SR-GKAFIMRPWDGYSIQ-----VGKKGGVRYRRIQVDPE--GDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKV 409 (668)
T ss_pred ec-CcEEEECCCCCeeEE-----cCCCCceEEEEEccCCc--ceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEE
Confidence 86 677777766654332 26788899999988888 588899999 89999987776 4556667788999999
Q ss_pred ecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecC
Q 002494 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (915)
Q Consensus 506 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (915)
++ +|++++.+.....+.+.|++++.....-....+-|+.++|+|+++++|.+..++--...|+++|+.+++....-..
T Consensus 410 s~--dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ 487 (668)
T COG4946 410 SP--DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP 487 (668)
T ss_pred cC--CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC
Confidence 77 4578999988899999999998877766667778999999999999998765444456799999998876554332
Q ss_pred CCCCceEEEEEcCCCCEEEEEe
Q 002494 586 FRKRSLGVVQFDTTRNRFLAAG 607 (915)
Q Consensus 586 ~~~~~v~~~~~sp~~~~l~s~~ 607 (915)
.. .=.+-+|.|++++|..-+
T Consensus 488 -ta-~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 488 -TA-YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred -cc-cccCcccCCCCcEEEEEe
Confidence 22 234568999999887755
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-08 Score=106.93 Aligned_cols=266 Identities=12% Similarity=0.102 Sum_probs=167.1
Q ss_pred CcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEEC----------CCeEEEEEec
Q 002494 369 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS----------KHIVHLYTYN 438 (915)
Q Consensus 369 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~----------dg~i~vwd~~ 438 (915)
|+|.+.|..+++.+..... +. .-..+ +||||+.|.++.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~------------------G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG------------------GF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEEc------------------cC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 8999999999887653211 11 11224 9999998877655 7899999999
Q ss_pred CCCceeeeEEeec-c---cCCeeEEEEecCCCeEEEEEE--eCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCcc
Q 002494 439 PTGELRQHLEIDA-H---VGGVNDIAFAHPNKQLCIVTC--GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQ 512 (915)
Q Consensus 439 ~~~~~~~~~~~~~-h---~~~v~~~~~s~~~~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 512 (915)
+.+.+..+..-.. + ......++++|||+. ++.. +.+..|.+.|+.+++.+..+.--. ...-...+ +..
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~--l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~---e~~ 159 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKT--LLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTA---NDT 159 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCE--EEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEec---CCc
Confidence 9877664321000 1 223447899999994 4443 347999999999999988876422 22111111 111
Q ss_pred EEEEEeCCCeEEEEecCCCCceeE-----ecCCCCcE-EEEEECC-CCCEEEEEeecCCCCceEEEEECCCC-----eeE
Q 002494 513 FIFSTAIDGKIKAWLYDYLGSRVD-----YDAPGNWC-TMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEG-----AIK 580 (915)
Q Consensus 513 ~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i-~~~~~sp-~g~~l~~~~~~~~~~~~i~~wd~~~~-----~~~ 580 (915)
...-+.||......+...+.... +.....++ ..-.|++ +|+++.... .+.|++.|+... ...
T Consensus 160 -~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~ 233 (352)
T TIGR02658 160 -FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAI 233 (352)
T ss_pred -cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceeccee
Confidence 22334455554444433222111 11100000 0013455 888877765 477999995432 223
Q ss_pred EEecCC------CCCceEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCC
Q 002494 581 RTYSGF------RKRSLGVVQFDTTRNRFLAAG----------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (915)
Q Consensus 581 ~~~~~~------~~~~v~~~~~sp~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 644 (915)
..+... ....+.-++++|+++++++.. ..+.|.++|..+++.+..+.... .+..++++||+
T Consensus 234 ~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dg 310 (352)
T TIGR02658 234 EAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDA 310 (352)
T ss_pred eeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCC
Confidence 222211 111334599999999888843 22579999999999999987643 67899999999
Q ss_pred C-EEEEEe-CCCcEEEEEcCCCceeeeec
Q 002494 645 S-LLAVTT-SDNGIKILANSDGVRLLRML 671 (915)
Q Consensus 645 ~-~l~s~~-~dg~i~iwd~~~~~~~~~~~ 671 (915)
+ +|++.. .++.|.++|..++ +.++.+
T Consensus 311 kp~lyvtn~~s~~VsViD~~t~-k~i~~i 338 (352)
T TIGR02658 311 KPLLYALSTGDKTLYIFDAETG-KELSSV 338 (352)
T ss_pred CeEEEEeCCCCCcEEEEECcCC-eEEeee
Confidence 9 777666 5788999999998 556555
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-08 Score=105.97 Aligned_cols=275 Identities=12% Similarity=0.057 Sum_probs=166.2
Q ss_pred eeecCCCcccEEEEecCCCCEEEEEEcCCCCeEEEEEe---------CCCcEEEEEcCCCceecccceeeeecccCcccc
Q 002494 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT---------NVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399 (915)
Q Consensus 329 ~~~~d~~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 399 (915)
+...|..+.+.+.++.-...-..+ +||||+.+.++.+ .+..|.+||..+++.+.+..+. ..
T Consensus 29 v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p---------~~ 98 (352)
T TIGR02658 29 VYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP---------EG 98 (352)
T ss_pred EEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC---------CC
Confidence 344555667777877754444555 9999997666666 6889999999999887642210 00
Q ss_pred cccccCCCccCeEEEEEcCCCCEEEEEE-C-CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCC
Q 002494 400 QNALLNDAAISVNRCVWGPDGLMLGVAF-S-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (915)
Q Consensus 400 ~~~~~~~~~~~v~~~~~spd~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~ 477 (915)
+. .........++++|||++|++.. . +..|.+.|+.+++.+..... .+...-...+++.. + .-+.||
T Consensus 99 p~---~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~t~e~~~---~-~~~~Dg 167 (352)
T TIGR02658 99 PR---FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFPTANDTF---F-MHCRDG 167 (352)
T ss_pred ch---hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEEecCCcc---E-EEeecC
Confidence 00 00123345789999999999876 3 68999999999876663321 11111111211111 1 122334
Q ss_pred cEEEEEcC-CCeeE-E---EecCCCCCEEEE-EeecCCCccEEEEEeCCCeEEEEecCCCCcee-----Eec-------C
Q 002494 478 MIKVWDVV-AGRKQ-Y---TFEGHEAPVYSV-CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-----DYD-------A 539 (915)
Q Consensus 478 ~i~vwd~~-~~~~~-~---~~~~~~~~v~~i-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~-------~ 539 (915)
......+. +|+.. . .+.....++..- .+.+. +|+++..... |.|.+.|+....... .+. .
T Consensus 168 ~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~-dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~w 245 (352)
T TIGR02658 168 SLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK-SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGW 245 (352)
T ss_pred ceEEEEecCCCceEEeeeeeecCCccccccCCceEcC-CCcEEEEecC-CeEEEEecCCCcceecceeeecccccccccc
Confidence 33332222 12211 1 111100111000 23332 4455655555 999999965432211 111 0
Q ss_pred CCCcEEEEEECCCCCEEEEEeec------CCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCC-EEEEEe-CCCc
Q 002494 540 PGNWCTMMAYSADGTRLFSCGTS------KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAG-DEFQ 611 (915)
Q Consensus 540 ~~~~i~~~~~sp~g~~l~~~~~~------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~-~dg~ 611 (915)
....+.-++++|+|+++++.... .++.+.|.++|..+++.+..+.... .+..++++||++ +|++.. .++.
T Consensus 246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCc
Confidence 12233459999999998874311 1234679999999999999887644 688999999999 888766 5788
Q ss_pred EEEEeCCCCceEEEEcC
Q 002494 612 IKFWDMDNMNMLTTVDA 628 (915)
Q Consensus 612 i~iwd~~~~~~~~~~~~ 628 (915)
|.++|..+++.+..+..
T Consensus 324 VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 324 LYIFDAETGKELSSVNQ 340 (352)
T ss_pred EEEEECcCCeEEeeecc
Confidence 99999999999998843
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.7e-07 Score=108.28 Aligned_cols=288 Identities=15% Similarity=0.186 Sum_probs=185.1
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEE----EcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCC
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLW----EVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 420 (915)
..+.|.++.|-++... ++.+..+|.|.+. +..+..... .+.-...|.+++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence 4578999999999974 6778889999999 444433221 23456789999999999
Q ss_pred CEEEEEECCCeEEEEEecC-------------CC--ce-----eeeEEeec------------------------ccCCe
Q 002494 421 LMLGVAFSKHIVHLYTYNP-------------TG--EL-----RQHLEIDA------------------------HVGGV 456 (915)
Q Consensus 421 ~~l~s~~~dg~i~vwd~~~-------------~~--~~-----~~~~~~~~------------------------h~~~v 456 (915)
..|+.++.++++.+.+-.- |. .+ ++...+.| +...-
T Consensus 133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~ 212 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGR 212 (928)
T ss_pred CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCc
Confidence 9999999999887753210 00 00 00000100 23345
Q ss_pred eEEEEecCCCeEEEEEEeC---C---CcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeC---CCeEEEEe
Q 002494 457 NDIAFAHPNKQLCIVTCGD---D---KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWL 527 (915)
Q Consensus 457 ~~~~~s~~~~~~~l~s~~~---d---~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~iwd 527 (915)
..++|-.||. ++|+.+. . ..++||+ +.|....+-+.-.+--.+++|.|++ ++|++... ...|.+|.
T Consensus 213 ~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 213 VRISWRGDGE--YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFFE 287 (928)
T ss_pred eEEEECCCCc--EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEEe
Confidence 6789999999 6777653 2 5799999 6677655554444444567887755 67877765 34466665
Q ss_pred cCCCCceeEe----cCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeE--EEecCCCCCceEEEEEcCCC-
Q 002494 528 YDYLGSRVDY----DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK--RTYSGFRKRSLGVVQFDTTR- 600 (915)
Q Consensus 528 ~~~~~~~~~~----~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~--~~~~~~~~~~v~~~~~sp~~- 600 (915)
-+ +-....+ ......|..+.|++|+..|+.... ..|.+|-..+...- +.+.-.....+..+.|+|..
T Consensus 288 rN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~-----~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p 361 (928)
T PF04762_consen 288 RN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE-----DRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP 361 (928)
T ss_pred cC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec-----CCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence 32 2211122 234558999999999999998763 22999998876532 23332222245569999954
Q ss_pred CEEEEEeCCCcEEEEeCC----CC--------ceEEEEcCC---------------------CCCCCcceEEEcCCCCEE
Q 002494 601 NRFLAAGDEFQIKFWDMD----NM--------NMLTTVDAD---------------------GGLPASPRLRFNKEGSLL 647 (915)
Q Consensus 601 ~~l~s~~~dg~i~iwd~~----~~--------~~~~~~~~~---------------------~~~~~v~~v~~s~~~~~l 647 (915)
..|...+.+|.+..++.. .+ ..+..+.+. .-..+|.+++|++++..+
T Consensus 362 ~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~ 441 (928)
T PF04762_consen 362 LRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRF 441 (928)
T ss_pred CEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeE
Confidence 446666666666555432 11 111111110 012368899999999889
Q ss_pred EEEeCCCcEEEEEcCCC
Q 002494 648 AVTTSDNGIKILANSDG 664 (915)
Q Consensus 648 ~s~~~dg~i~iwd~~~~ 664 (915)
++-..||.|.+|.....
T Consensus 442 avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 442 AVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EEEECCCCEEEEEecCC
Confidence 99999999999997654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-09 Score=115.63 Aligned_cols=405 Identities=12% Similarity=0.090 Sum_probs=236.6
Q ss_pred CccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCc------------eeeeEEeecccCCeeEEEEecCCCeEEEEEEe
Q 002494 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE------------LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~------------~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~ 474 (915)
......|++|+....++|+|+.||.++|..+.+... +..-..+.||.+.|.-+.|+.+.+ -+-|+.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 445688999999999999999999999998875321 111235779999999999998887 588999
Q ss_pred CCCcEEEEEcCCCeeEEEec--CCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCC
Q 002494 475 DDKMIKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD 552 (915)
Q Consensus 475 ~d~~i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~ 552 (915)
.+|.|.||-+-.|.....+. ...+-|.+++|+. +|+.+.....||.|.+=.++.. .+......+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvdGN-RIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVDGN-RIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeeccc-eecchhcchheccceeeccc
Confidence 99999999988776443322 2446678888876 5578888888888766554422 11111222334557899999
Q ss_pred CCEEEEEeecCCCCceEEEEECCCCe-------eEEEecCC---CCCceEEEEEc--------CCCCEEEEEeCCCcEEE
Q 002494 553 GTRLFSCGTSKEGESHLVEWNESEGA-------IKRTYSGF---RKRSLGVVQFD--------TTRNRFLAAGDEFQIKF 614 (915)
Q Consensus 553 g~~l~~~~~~~~~~~~i~~wd~~~~~-------~~~~~~~~---~~~~v~~~~~s--------p~~~~l~s~~~dg~i~i 614 (915)
.+.++.+-. ++.+.++|....- +.....+. ....+..+.|. |+...|+++-.+|.+.|
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 988776653 5668899865321 11111110 01124444443 57889999999999888
Q ss_pred EeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCC---------cEEEEEcCCCceeeeeccCCCCcccccCCCC
Q 002494 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN---------GIKILANSDGVRLLRMLEGRAMDKNRCPSEP 685 (915)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 685 (915)
-.-.+......+... -.+....|+++|.+||+++.|. .|++|..- | ..+.+++.....++.+.|.
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G-~i~gtlkvpg~~It~lsWE- 317 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-G-HIVGTLKVPGSCITGLSWE- 317 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEeccc-h-hheEEEecCCceeeeeEEc-
Confidence 665544333333322 1678899999999999998752 45555432 3 4455555444444444443
Q ss_pred CCCCCCceeeecccCccccccCCcccCCCCCCCCcccccccCCCceeccCCceeecc---CC---CceeEeecCCCCCcc
Q 002494 686 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAE---DV---DKIKSWRIPDISDPS 759 (915)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~---~~---~~v~iw~~~~~~~~~ 759 (915)
..+-.++.+- +.++..-++. .+..+.--.+.++.. .+ --|.+||..+. ..
T Consensus 318 -----g~gLriA~Av------dsfiyfanIR-----------P~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~n--ek 373 (1189)
T KOG2041|consen 318 -----GTGLRIAIAV------DSFIYFANIR-----------PEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTN--EK 373 (1189)
T ss_pred -----CCceEEEEEe------cceEEEEeec-----------ccceEEEeeeEEEEEEccCCCcceEEEEEecccC--hh
Confidence 1222222211 1111111100 011111111122221 11 35678887642 12
Q ss_pred ceeEeecCCccCCCceEEEEEecCCceEEEeeccceeEEeecccccCCCCCCccccccceeecCCCCCceeccCCCCCCC
Q 002494 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (915)
Q Consensus 760 ~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~ 839 (915)
.++ .-....+++|+.+--.|++-..||.+.-++--. .++ ++|-+.-...+.+.+.. .
T Consensus 374 ~vK--------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le-~~~-----------~~~~l~LCNSIGT~lD~--k- 430 (1189)
T KOG2041|consen 374 TVK--------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLE-NRS-----------RVYFLQLCNSIGTSLDY--K- 430 (1189)
T ss_pred hhh--------hhcceeehheecccEEEEeccccCCCcchhhhh-ccc-----------ceEEEeeecccCCcCCC--C-
Confidence 222 122356788877776667766777765441100 011 22222222223322222 1
Q ss_pred CCceeEEEEecCCCeEEEecCCeeEEeeccCCCC
Q 002494 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKP 873 (915)
Q Consensus 840 ~~~I~~l~~S~dg~~L~s~sd~~v~vw~l~t~k~ 873 (915)
--.|.-.-..-++.+++.+|...+.+|.....|.
T Consensus 431 ytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~ 464 (1189)
T KOG2041|consen 431 YTDIRPKFVCVNGICVVIASEERYFIWHYVLPKF 464 (1189)
T ss_pred cceeeeeEEEecceEEEEeccccEEEEEEeccch
Confidence 3345545556788999999999999999887664
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-10 Score=127.14 Aligned_cols=275 Identities=13% Similarity=0.107 Sum_probs=188.4
Q ss_pred CEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCc--cCeEEEEEcCCCCEEEE
Q 002494 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA--ISVNRCVWGPDGLMLGV 425 (915)
Q Consensus 348 ~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~spd~~~l~s 425 (915)
.+.+.++-. +|++| +..-.|.+||+..+..+.... ....+..|. +.+. -.+.++++
T Consensus 9 ~l~~~~~~~--~~lla--g~gp~i~~yd~~s~~li~~~~-------------~~~~~~~H~~e~~~~-----l~~~~~v~ 66 (967)
T KOG0974|consen 9 PLNLPQLVS--DYLLA--GSGPEILVYDLSSGCLIRHLI-------------QSKILEVHRGEGKVK-----LLSGKIVT 66 (967)
T ss_pred cccchhhcc--ceeee--cCCCceEEeeCCchhHhhhhh-------------hhcccccccccccce-----eccceEEE
Confidence 444444433 45554 346689999999987664311 111123340 0010 12335555
Q ss_pred EECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEE---E
Q 002494 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY---S 502 (915)
Q Consensus 426 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~---~ 502 (915)
+..-+.+..=+.... .+..-...|....+.-+.. .++.++.++.+.+||...+.....+.. ..... +
T Consensus 67 ~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~-~er~~l~~~ 136 (967)
T KOG0974|consen 67 CAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQS-DERCTLYSS 136 (967)
T ss_pred EEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCC-CceEEEEeE
Confidence 554444333222211 1111233444455555666 578888889999999888776666543 22221 1
Q ss_pred EEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEE-
Q 002494 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR- 581 (915)
Q Consensus 503 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~- 581 (915)
+-+-...+.-++++|+.-+.|.+|+.........+.+|.+.|.++.++-||+++++++. |..+++|++.+++...
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGC 212 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCc
Confidence 11222223368999999999999998865666678899999999999999999999985 7779999999988766
Q ss_pred EecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 002494 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (915)
Q Consensus 582 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 661 (915)
..-+|.. .+..+.|.|+ .++++++|-+.++|+.+ +..+..+..|... .++.++..++...+++++.||.+++|+.
T Consensus 213 ~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~-~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 213 TGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGK-GIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ccccccc-eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhc-ceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 5667887 8889999988 89999999999999776 4555577776543 6899999999999999999999999987
Q ss_pred CC
Q 002494 662 SD 663 (915)
Q Consensus 662 ~~ 663 (915)
..
T Consensus 288 ~~ 289 (967)
T KOG0974|consen 288 NG 289 (967)
T ss_pred hc
Confidence 64
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.6e-08 Score=97.28 Aligned_cols=271 Identities=15% Similarity=0.233 Sum_probs=177.1
Q ss_pred CCCceeeecCCCcccE--EEEecCCCCEEEEEEcCCCCeEEEEEeC---CCcEEEEEcCC--CceecccceeeeecccCc
Q 002494 324 AHTPNVYSQDDLTKTV--VRTLNQGSNVMSMDFHPQQQTILLVGTN---VGDISLWEVGS--RERLAHKPFKVWDISAAS 396 (915)
Q Consensus 324 g~~~~~~~~d~~~~~~--~~~l~h~~~V~~v~fspd~~~ll~~gs~---dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~ 396 (915)
++.+.+|..|..+++. ++...+.+.++-|+|+|+++. |+++.. +|.|.-|.+.. |....-..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~-LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~---------- 83 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRH-LYVVNEPGEEGGVAAYRIDPDDGRLTFLNR---------- 83 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCE-EEEEEecCCcCcEEEEEEcCCCCeEEEeec----------
Confidence 4556667766555543 455558889999999999985 555543 57787777765 44322111
Q ss_pred ccccccccCCCccCeEEEEEcCCCCEEEEEEC-CCeEEEEEecCCCceeeeEEeecccCC----------eeEEEEecCC
Q 002494 397 MPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGG----------VNDIAFAHPN 465 (915)
Q Consensus 397 ~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~h~~~----------v~~~~~s~~~ 465 (915)
......+-+.++++++|++++++.. .|.|.++.+.....+........|.+. +.+..+.|++
T Consensus 84 -------~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~ 156 (346)
T COG2706 84 -------QTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG 156 (346)
T ss_pred -------cccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC
Confidence 0112233488999999999998865 588999999775554444344456655 8899999999
Q ss_pred CeEEEEEEe-CCCcEEEEEcCCCeeEEEec---CCCCCEEEEEeecCCCccEEEE-EeCCCeEEEEecCCC-CceeEec-
Q 002494 466 KQLCIVTCG-DDKMIKVWDVVAGRKQYTFE---GHEAPVYSVCPHHKESIQFIFS-TAIDGKIKAWLYDYL-GSRVDYD- 538 (915)
Q Consensus 466 ~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~~l~s-~~~dg~i~iwd~~~~-~~~~~~~- 538 (915)
+ ++++.+ ..-.|.+|++..|+....-. .....-+-|.|+|++ ++... +-.+++|-+|..+.. +....++
T Consensus 157 ~--~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~--k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 157 R--YLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNG--KYAYLVNELNSTVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred C--EEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCC--cEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence 9 455542 23468999999876432111 233455778999965 55544 445899999998874 2222211
Q ss_pred --------CCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECC--CCeeEEE-ecCCCCCceEEEEEcCCCCEEEEEe
Q 002494 539 --------APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAG 607 (915)
Q Consensus 539 --------~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~--~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~s~~ 607 (915)
........+..++||++|.++.. +...|.++.+. +++.... .....+..-+.+.+++.|++|+++.
T Consensus 233 i~tlP~dF~g~~~~aaIhis~dGrFLYasNR---g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 233 IDTLPEDFTGTNWAAAIHISPDGRFLYASNR---GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred eccCccccCCCCceeEEEECCCCCEEEEecC---CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEc
Confidence 12336788999999999998764 34568777764 3432211 1111222467889999999999988
Q ss_pred C-CCcEEEEeCCC
Q 002494 608 D-EFQIKFWDMDN 619 (915)
Q Consensus 608 ~-dg~i~iwd~~~ 619 (915)
+ +..|.+|.+..
T Consensus 310 q~sd~i~vf~~d~ 322 (346)
T COG2706 310 QKSDNITVFERDK 322 (346)
T ss_pred cCCCcEEEEEEcC
Confidence 5 34688887653
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-09 Score=113.67 Aligned_cols=193 Identities=13% Similarity=0.159 Sum_probs=152.2
Q ss_pred CCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEe------c------------CCCeEEEEEEeCCCcE
Q 002494 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA------H------------PNKQLCIVTCGDDKMI 479 (915)
Q Consensus 418 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s------~------------~~~~~~l~s~~~d~~i 479 (915)
|...++|..+.||.+++|+...++..........-.+..++..|. | .+....++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456799999999999999999876543322222223445555553 1 1122278889999999
Q ss_pred EEEEcCCCeeEEEec--CCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEE
Q 002494 480 KVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (915)
Q Consensus 480 ~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 557 (915)
.+|++..|+....+. .|.+.|+++.++..- ..|.+++.|+.+..|+.........+......+.+++.+|||+.++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 999999999888776 599999999886543 6899999999999999998888888888888999999999999999
Q ss_pred EEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCC-----CCEEEEE-eCCCcEEEEeCCC
Q 002494 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-----RNRFLAA-GDEFQIKFWDMDN 619 (915)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~s~-~~dg~i~iwd~~~ 619 (915)
+++ ++|.+||+++++.+..|.||.+ +|++++|.-+ |.+++++ ..+.-+.+|-+..
T Consensus 161 ~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 875 3599999999999999999998 9999999876 6777764 3455577776654
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-09 Score=103.52 Aligned_cols=253 Identities=14% Similarity=0.090 Sum_probs=167.2
Q ss_pred CCCCEEEEEEcC---CCCeEEEEEeCCCcEEEEEcCCCceecc-cceeeeecccCcccccccccCCCccCeEEEEEcCCC
Q 002494 345 QGSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (915)
Q Consensus 345 h~~~V~~v~fsp---d~~~ll~~gs~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 420 (915)
..+.+..|.|+- +|...++-+..+|.|.++.....+.... ..+.. ..-......++.|++.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------------~ki~~~~~lslD~~~~~ 133 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------------KKISVVEALSLDISTSG 133 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--------------hhhhheeeeEEEeeccC
Confidence 345677777763 4443556667789999987765432211 00000 00011135678899999
Q ss_pred CEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcC-CCeeEEE-ecCCCC
Q 002494 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYT-FEGHEA 498 (915)
Q Consensus 421 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~-~~~~~~ 498 (915)
..++++..+|.+.+-+.... .+.....++.|..+++...|+...++ ++++|+.|+.+..||++ .++.+.. .+.|..
T Consensus 134 ~~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~ 211 (339)
T KOG0280|consen 134 TKIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS 211 (339)
T ss_pred ceEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeec
Confidence 99999999999985554332 23333367789999999999987777 89999999999999998 3444443 456888
Q ss_pred CEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCC--EEEEEeecCCCCceEEEEECCC
Q 002494 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT--RLFSCGTSKEGESHLVEWNESE 576 (915)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~--~l~~~~~~~~~~~~i~~wd~~~ 576 (915)
.|.+|.-+|. .+.++++|+.|-.|++||.++...+..-..-.+.|..+.++|.-. .++++-. +-.++-+...
T Consensus 212 GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh-----~G~ki~~~~~ 285 (339)
T KOG0280|consen 212 GVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMH-----NGAKILDSSD 285 (339)
T ss_pred ceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHh-----cCceEEEecc
Confidence 9999987765 558999999999999999998777665555667899999998543 3344432 1144555443
Q ss_pred C--e---eEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCcEE-EEeCCCC
Q 002494 577 G--A---IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIK-FWDMDNM 620 (915)
Q Consensus 577 ~--~---~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~-iwd~~~~ 620 (915)
+ + ....++.|.. -...-.|......+++++ .|..++ +|-.-++
T Consensus 286 ~~~e~~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 286 KVLEFQIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccchheeeeccccccc-eeeccccccccceeeeeeccccceeeeeeeccC
Confidence 2 2 2334455554 455556644445677755 566644 6654443
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=108.29 Aligned_cols=167 Identities=19% Similarity=0.288 Sum_probs=127.0
Q ss_pred chHHHHHHHHHHHhhcCHHHHHHHHHHhhCCCCc---------hHHHHHHHHcCCHHHHHHHHcCCCc--ccccccchhH
Q 002494 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKHFEDQVQAGEWDEVERYLCGFTK--VEDNRYSMKI 72 (915)
Q Consensus 4 ~~~ev~rli~q~L~~~g~~~s~~~L~~ESg~~~~---------~~~l~~~i~~G~w~~~~~~l~~~~~--~~~~~~~~~~ 72 (915)
-.+|+.|||+.||-..||.++|+.+.+|+|+..+ -..+|.+|..|+-++|++.+..+.. ++.+ ..+
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n---~~l 101 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN---REL 101 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc---hhH
Confidence 4678999999999999999999999999999872 3678999999999999999999832 2222 238
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHhcccccccCHHHHHHHHHhhccccccccccccccCC--chHHHHHHHHHHHHH
Q 002494 73 FFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD--TKSARNIMLVELKKL 150 (915)
Q Consensus 73 ~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~r~~l~~~l~~~ 150 (915)
.|.+.+|+++||+..+..++|++|+++++.|+..-+++.+..|...+..-.++...... ++. ....|.++...+...
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp-~~~l~~~s~R~kvA~~vN~a 180 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESP-SAELLSQSLRQKVASEVNSA 180 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCc-HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999887778888887777654444222111 111 234588888888887
Q ss_pred hhcCcCccccCCCCCCCchHHHHHHHHHHHHH
Q 002494 151 IEANPLFRDKLSFPSFKSSRLRTLINQSLNWQ 182 (915)
Q Consensus 151 i~~~~~~~~~~~~~~~p~~rL~~ll~qal~~q 182 (915)
|-..-- . --..+|..|++.-+..|
T Consensus 181 iL~~~~---~-----~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 181 ILASQE---H-----ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHHhc---c-----cccchHHHHHHHHHHHH
Confidence 754221 0 12458888885555444
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.2e-10 Score=108.04 Aligned_cols=311 Identities=15% Similarity=0.226 Sum_probs=199.0
Q ss_pred eEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCcee--EecCCCCcEEEEEECCCCCEEEEEeecCCCC
Q 002494 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (915)
Q Consensus 489 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~ 566 (915)
.+..++||.+.++....-|..+ -+++.+.|.++++|--++..... .......+++++.+.++.+.|+++-. .
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~----n 89 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD----N 89 (404)
T ss_pred hhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----c
Confidence 3556778888888887777665 49999999999999544433221 22223457889999999988888764 5
Q ss_pred ceEEEEECC----CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcC
Q 002494 567 SHLVEWNES----EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (915)
Q Consensus 567 ~~i~~wd~~----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 642 (915)
+++.-+.+. .....+.+..|.. .+..+-|+-...++++.+.|..+.---.+.+..+..+.... ..+.+.+.-
T Consensus 90 gtvtefs~sedfnkm~~~r~~~~h~~-~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~---~~t~~~~d~ 165 (404)
T KOG1409|consen 90 GTVTEFALSEDFNKMTFLKDYLAHQA-RVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET---PASALQFDA 165 (404)
T ss_pred ceEEEEEhhhhhhhcchhhhhhhhhc-ceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec---cCCCCceee
Confidence 667766543 3445566677777 88899999888899999988776544445555443332211 112222222
Q ss_pred CCCEEEEEeCCCcEEEEEcC-CCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCCCCCCCcc
Q 002494 643 EGSLLAVTTSDNGIKILANS-DGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVS 721 (915)
Q Consensus 643 ~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 721 (915)
. +...|...|.|.+..+. ++-.++.++.+|.+.+....+.
T Consensus 166 ~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd------------------------------------- 206 (404)
T KOG1409|consen 166 L--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD------------------------------------- 206 (404)
T ss_pred E--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc-------------------------------------
Confidence 1 55556666666665544 2235667777777765544322
Q ss_pred cccccCCCceeccCCceeeccC-CCceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEeeccceeEEee
Q 002494 722 ISSLGTIDGSRLVDVKPRVAED-VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWK 800 (915)
Q Consensus 722 ~~~~~~~~~~~s~dg~~la~~~-~~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~ 800 (915)
+..+.+.++. +..+.+||+-. ..-....+.| |...|..+..-+--+.|++++.||.|.+|+
T Consensus 207 ------------~~~~~LfSg~~d~~vi~wdigg----~~g~~~el~g--h~~kV~~l~~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 207 ------------PGQRLLFSGASDHSVIMWDIGG----RKGTAYELQG--HNDKVQALSYAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred ------------CCCcEEEeccccCceEEEeccC----Ccceeeeecc--chhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence 2233444444 38899999873 3333345555 899999999988889999999999999999
Q ss_pred ccccc--------------------------------------CCCCCC--------------ccccc-cceeecCCCC-
Q 002494 801 WQRTE--------------------------------------RNPSGK--------------ATANV-APQLWQPPSG- 826 (915)
Q Consensus 801 l~~~~--------------------------------------~s~dg~--------------~~~~~-~i~l~~~~~~- 826 (915)
++... ...=|+ .+..+ .+|+.+.--.
T Consensus 269 mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~ 348 (404)
T KOG1409|consen 269 MNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPT 348 (404)
T ss_pred ccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchh
Confidence 97632 000000 00000 3444442111
Q ss_pred ------CceeccCCCCCCCCCceeEEEEecCCCeEEEec-CCeeEEeeccC
Q 002494 827 ------TLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT 870 (915)
Q Consensus 827 ------~~~~~~~~~~~h~~~~I~~l~~S~dg~~L~s~s-d~~v~vw~l~t 870 (915)
..+...... .-.|+++.+-.+-.+|+|++ |.-|++||++.
T Consensus 349 i~~~~~t~LA~phei----~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 349 IKDEERTPLAIPHEI----KTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred hhcCCCCcccccccc----ccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 112221111 24688999999999999999 99999999985
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.3e-09 Score=101.47 Aligned_cols=246 Identities=9% Similarity=0.124 Sum_probs=172.0
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd 483 (915)
+.+|...|+....-|-..-+.+.+.|.+++||--.+..+.... .......+++++.+.++.. .|+.|-..|++.-+.
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps-I~~~mP~~~~~~~y~~e~~--~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS-IYHYMPSPCSAMEYVSESR--RLYVGQDNGTVTEFA 96 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch-hhhhCCCCceEeeeeccce--EEEEEEecceEEEEE
Confidence 6788899999888898889999999999999965443322111 1123456899999999888 688898899998886
Q ss_pred cCC----CeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEE
Q 002494 484 VVA----GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (915)
Q Consensus 484 ~~~----~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~ 559 (915)
+.. ....+....|..++..+.|+-.. +.+++.+.|..+.---.+.+...-.+ + -.+...+-.+.+..
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~~hc~e~~~~lg~Y------~-~~~~~t~~~~d~~~ 167 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFAWHCTESGNRLGGY------N-FETPASALQFDALY 167 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceEEEeeccCCcccce------E-eeccCCCCceeeEE
Confidence 543 33455566799999999887654 68999998887652222222211110 0 11111112222223
Q ss_pred eecCCCCceEEEE--ECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE-EEEcCCCCCCCcc
Q 002494 560 GTSKEGESHLVEW--NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML-TTVDADGGLPASP 636 (915)
Q Consensus 560 ~~~~~~~~~i~~w--d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~ 636 (915)
...++..+.+..- ....-..+.++.+|.+ .+.+++|.|....+++|..|..+.+||+...+-+ ..+.+|.+ .|.
T Consensus 168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~-~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~--kV~ 244 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQNGCQLITTFNGHTG-EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND--KVQ 244 (404)
T ss_pred EEecccccceEEEEEeecCCceEEEEcCccc-ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchh--hhh
Confidence 3333444444433 3345567889999998 8999999999999999999999999999754433 44455544 788
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 637 RLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 637 ~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
.+..-+--+.+.+++.||.|.+|+.+..
T Consensus 245 ~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 245 ALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhheeeeeccCCCeEEEEeccce
Confidence 8888888889999999999999999765
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.14 E-value=6e-08 Score=106.88 Aligned_cols=273 Identities=13% Similarity=0.065 Sum_probs=166.8
Q ss_pred EEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCC
Q 002494 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT 440 (915)
Q Consensus 361 ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~ 440 (915)
.+++++.+|.|.-+|..+|+.+-. .+... .... ... .++..++.++.++.+..+|..+|
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~-------~~~~~---------~~~~---~p~--v~~~~v~v~~~~g~l~ald~~tG 125 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWR-------VDLDE---------RLSG---GVG--ADGGLVFVGTEKGEVIALDAEDG 125 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeee-------ecCCC---------Cccc---ceE--EcCCEEEEEcCCCEEEEEECCCC
Confidence 366778889999999999986532 21110 0111 111 25678888889999999999998
Q ss_pred CceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEE-eecCCCccEEEEEeC
Q 002494 441 GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC-PHHKESIQFIFSTAI 519 (915)
Q Consensus 441 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~-~~~~~~~~~l~s~~~ 519 (915)
+.+.... + .+.+.+.... .+. .++.++.++.++.||..+|+.+..+......+.... -+|.-.+..++.+..
T Consensus 126 ~~~W~~~-~---~~~~~~~p~v-~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~ 198 (377)
T TIGR03300 126 KELWRAK-L---SSEVLSPPLV-ANG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFA 198 (377)
T ss_pred cEeeeec-c---CceeecCCEE-ECC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECC
Confidence 7654321 1 1222221111 233 466677899999999999998777654322211000 001001136778888
Q ss_pred CCeEEEEecCCCCceeEecCCCC----c---EEEEEECC--CCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCc
Q 002494 520 DGKIKAWLYDYLGSRVDYDAPGN----W---CTMMAYSA--DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS 590 (915)
Q Consensus 520 dg~i~iwd~~~~~~~~~~~~~~~----~---i~~~~~sp--~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (915)
++.+..+|..+++.......... . ...+.-+| .+..+++++. ++.++.+|..+|+.+.......
T Consensus 199 ~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~----~g~l~a~d~~tG~~~W~~~~~~--- 271 (377)
T TIGR03300 199 GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY----QGRVAALDLRSGRVLWKRDASS--- 271 (377)
T ss_pred CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc----CCEEEEEECCCCcEEEeeccCC---
Confidence 99999999988765543321100 0 00011111 2445665553 6779999999998877665221
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002494 591 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670 (915)
Q Consensus 591 v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 670 (915)
..... ..+..+++++.||.++.+|..+++.+......... ...+... .+..+++++.+|.|+++|..+| +.+..
T Consensus 272 ~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~-~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG-~~~~~ 345 (377)
T TIGR03300 272 YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR-QLTAPAV--VGGYLVVGDFEGYLHWLSREDG-SFVAR 345 (377)
T ss_pred ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCC-ccccCEE--ECCEEEEEeCCCEEEEEECCCC-CEEEE
Confidence 11222 24677888889999999999999888766322111 2222222 4678999999999999999999 55555
Q ss_pred ccCC
Q 002494 671 LEGR 674 (915)
Q Consensus 671 ~~~~ 674 (915)
+..+
T Consensus 346 ~~~~ 349 (377)
T TIGR03300 346 LKTD 349 (377)
T ss_pred EEcC
Confidence 5433
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.8e-09 Score=108.56 Aligned_cols=189 Identities=16% Similarity=0.236 Sum_probs=145.5
Q ss_pred EEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEE--------------------cCCC
Q 002494 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--------------------GPDG 420 (915)
Q Consensus 361 ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------------------spd~ 420 (915)
++|..+.||.+++|+...++......- ...-++..++..| +-|.
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p----------------~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t 70 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAP----------------IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDT 70 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeecc----------------chhccCcceeEEEEEEeccchHHHHhHHHHhhccCCc
Confidence 578888999999999998876543110 0011222223332 2244
Q ss_pred CEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCE
Q 002494 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (915)
Q Consensus 421 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v 500 (915)
..++-|...|.|.+|++..|+..... .-..|.+.|.++.++.+-. +|.+++.|+.+..|+...+..++.+......+
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~ 147 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQKPLV 147 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccCCCcc
Confidence 56788889999999999987654422 3457999999999998877 79999999999999999999999999989999
Q ss_pred EEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCC-----CCEEEEEeecCCCCceEEEEECC
Q 002494 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-----GTRLFSCGTSKEGESHLVEWNES 575 (915)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~-----g~~l~~~~~~~~~~~~i~~wd~~ 575 (915)
.+++++|+ |..+++++ +.|++||+++.+....+.+|.++|.+++|..+ |.+++++.. ....+.+|-..
T Consensus 148 ~sl~is~D--~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~~w~v~ 220 (541)
T KOG4547|consen 148 SSLCISPD--GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGITVWVVE 220 (541)
T ss_pred ceEEEcCC--CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---cccceeEEEEE
Confidence 99999886 46788776 58999999999999999999999999999877 788876643 23446666543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-08 Score=98.52 Aligned_cols=245 Identities=12% Similarity=0.072 Sum_probs=158.5
Q ss_pred ccCeEEEEEcC---CCC-EEEEEECCCeEEEEEecCCCceeeeEEeeccc---CCeeEEEEecCCCeEEEEEEeCCCcEE
Q 002494 408 AISVNRCVWGP---DGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV---GGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (915)
Q Consensus 408 ~~~v~~~~~sp---d~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~~l~s~~~d~~i~ 480 (915)
...+..+.|+. +|. .++-+..+|.|.++.............+..-. ....++.|++.+.+ ++++..+|.+.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~--i~vs~s~G~~~ 146 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTK--IFVSDSRGSIS 146 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCce--EEEEcCCCcEE
Confidence 44566677764 455 56667778999999876543322111222111 12457789998884 77888889998
Q ss_pred EEEcCCCee--EEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCc-eeE-ecCCCCcEEEEEECC-CCCE
Q 002494 481 VWDVVAGRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVD-YDAPGNWCTMMAYSA-DGTR 555 (915)
Q Consensus 481 vwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~-~~~~~~~i~~~~~sp-~g~~ 555 (915)
+-+...... ++.++.|.-..+...|+.... +.+.+|+.|+.+..||++..+. +.. ...|...|.++.-+| .+.+
T Consensus 147 ~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~ 225 (339)
T KOG0280|consen 147 GVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTY 225 (339)
T ss_pred EEecceeeeeecccccccceeeeeeecccCCC-ceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCce
Confidence 666554433 347889999999999986544 7999999999999999994442 222 345677888888876 5778
Q ss_pred EEEEeecCCCCceEEEEECC-CCeeEEEecCCCCCceEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCceE-----EEEc
Q 002494 556 LFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRN--RFLAAGDEFQIKFWDMDNMNML-----TTVD 627 (915)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~s~~~dg~i~iwd~~~~~~~-----~~~~ 627 (915)
+++|+. |-.|++||.+ -++++..-. .++.|..+.++|.-. .++++-.+| .+|-+...+... ...+
T Consensus 226 I~TGsY----De~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~ 298 (339)
T KOG0280|consen 226 IATGSY----DECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDK 298 (339)
T ss_pred EEEecc----ccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccc
Confidence 899987 5569999998 456654333 223799999998543 333333343 677776654222 2223
Q ss_pred CCCCCCCcceEEEcCCCCEEEEEe-CCCcEE-EEEcCCC
Q 002494 628 ADGGLPASPRLRFNKEGSLLAVTT-SDNGIK-ILANSDG 664 (915)
Q Consensus 628 ~~~~~~~v~~v~~s~~~~~l~s~~-~dg~i~-iwd~~~~ 664 (915)
.|.. -+..-.|.....++|+|+ .|+.++ +|-..++
T Consensus 299 ~hdS--l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 299 IHDS--LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccc--eeeccccccccceeeeeeccccceeeeeeeccC
Confidence 3322 344555654456788876 466644 7765554
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=117.28 Aligned_cols=288 Identities=15% Similarity=0.211 Sum_probs=194.4
Q ss_pred hhccccCCCcceeecCCCCCceeeecCC-------CcccEEEEecC--CCCEEEEEEcCCC--CeEEEEEeCCCcEEEEE
Q 002494 307 MKRIRTGQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQ--GSNVMSMDFHPQQ--QTILLVGTNVGDISLWE 375 (915)
Q Consensus 307 ~~~~~~~~~~~~~~s~~g~~~~~~~~d~-------~~~~~~~~l~h--~~~V~~v~fspd~--~~ll~~gs~dg~v~iwd 375 (915)
.......+++.+..+|.|+.++.++.-+ .++...+-+.| .-.|-.+.|||.- .+.++ ......-.+|+
T Consensus 19 lsl~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiV-sts~qkaiiwn 97 (1081)
T KOG0309|consen 19 LSLKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIV-STSNQKAIIWN 97 (1081)
T ss_pred eEEEecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEE-ecCcchhhhhh
Confidence 3444556888899999999988876543 36666666665 3467888898754 33333 44556677888
Q ss_pred cCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCC-CEEEEEECCCeEEEEEecCCCceeeeEEeecccC
Q 002494 376 VGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG 454 (915)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~ 454 (915)
+....... ..-++.+|...|+.+.|.|.. ..+++++.|..+..||+.+..... .....-..
T Consensus 98 lA~ss~~a----------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~--ys~~~w~s 159 (1081)
T KOG0309|consen 98 LAKSSSNA----------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF--YSTSSWRS 159 (1081)
T ss_pred hhcCCccc----------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce--eeeecccc
Confidence 76432211 122367899999999999965 578999999999999998865322 23333445
Q ss_pred CeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC-eeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCc
Q 002494 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS 533 (915)
Q Consensus 455 ~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 533 (915)
....++|+-.... +.+.+..+.|++||.+.| .++..+++|...|+.+.|+.... ..+.+++.||+|+.||......
T Consensus 160 ~asqVkwnyk~p~--vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 160 AASQVKWNYKDPN--VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred cCceeeecccCcc--hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeeccccccc
Confidence 6778999977773 556677788999999875 56778899999999998865433 4688999999999999876543
Q ss_pred ee-EecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEE---------EECCC-CeeEEEecCCCCCceEEEEEcCCC--
Q 002494 534 RV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE---------WNESE-GAIKRTYSGFRKRSLGVVQFDTTR-- 600 (915)
Q Consensus 534 ~~-~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~---------wd~~~-~~~~~~~~~~~~~~v~~~~~sp~~-- 600 (915)
.. .......++..-.+.|-|.-...--. .|++.+.+ |+..+ .+.++.|.||.+ .|....|-..+
T Consensus 237 e~~~~vtt~~piw~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~ 313 (1081)
T KOG0309|consen 237 ESKRTVTTNFPIWRGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKEC 313 (1081)
T ss_pred ccceeccccCcceeccccccCceeEeccc--cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccc
Confidence 32 22234456666677775543221111 12223333 33322 457899999987 55544443211
Q ss_pred --------CEEEEEeCCCcEEEEeCCC
Q 002494 601 --------NRFLAAGDEFQIKFWDMDN 619 (915)
Q Consensus 601 --------~~l~s~~~dg~i~iwd~~~ 619 (915)
-.|++-+.|..+++|-+.+
T Consensus 314 ~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 314 DGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cCCCCccceeEEEeecCCceEeeeccH
Confidence 2589999999999998753
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-07 Score=103.82 Aligned_cols=204 Identities=11% Similarity=0.033 Sum_probs=126.4
Q ss_pred CCEEEEEEcCCCCeEEEEEeC---CCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEE
Q 002494 347 SNVMSMDFHPQQQTILLVGTN---VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (915)
Q Consensus 347 ~~V~~v~fspd~~~ll~~gs~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l 423 (915)
+.+....|||||+++++..+. +..|.++|+.+++... +....+......|+|||+.+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence 478899999999864443333 3569999998886542 12244456678899999988
Q ss_pred EEEEC---CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCC--cEEEEEcCCCeeEEEecCCCC
Q 002494 424 GVAFS---KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEA 498 (915)
Q Consensus 424 ~s~~~---dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~ 498 (915)
+.... +..|+++|+.++.. . .+..+........|+|||+.+ +++....+ .|++.|+.+++...... ...
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I-~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~ 321 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRI-VFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK 321 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEE-EEEECCCCCceEEEEECCCCCeEeCcc-CCC
Confidence 76432 35688888877642 3 233333334456899999973 33433333 68888888776533222 111
Q ss_pred CEEEEEeecCCCccEEEEEeCC---------CeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceE
Q 002494 499 PVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (915)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i 569 (915)
. ...|+|++ +.++..+.. ..|.+.|+.++.... +... .......|+|||+.++..... .+...+
T Consensus 322 ~--~~~~SPDG--~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~-~~~~~L 394 (419)
T PRK04043 322 N--NSSVSTYK--NYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYL-GNQSAL 394 (419)
T ss_pred c--CceECCCC--CEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEcc-CCcEEE
Confidence 1 23787754 566555543 257777877665433 3222 233468899999999877654 345568
Q ss_pred EEEECCCCeeEEEec
Q 002494 570 VEWNESEGAIKRTYS 584 (915)
Q Consensus 570 ~~wd~~~~~~~~~~~ 584 (915)
.+.++... ....+.
T Consensus 395 ~~~~l~g~-~~~~l~ 408 (419)
T PRK04043 395 GIIRLNYN-KSFLFP 408 (419)
T ss_pred EEEecCCC-eeEEee
Confidence 88888643 333343
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=127.60 Aligned_cols=200 Identities=14% Similarity=0.233 Sum_probs=159.7
Q ss_pred CCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEc
Q 002494 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (915)
Q Consensus 405 ~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~ 484 (915)
..+-..|.++.=+|...+.++|+.||.|++|....++.+...... +. ..|+.+.|+.+|+ -+..+..||.+.+|.+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeeccc
Confidence 345567888888899999999999999999999988876644332 33 7899999999999 4888889999999996
Q ss_pred CCCeeEEEecCCCCCEEEEEeecCCCccEEEEEe---CCCeEEEEecCCCCce-eEecCCCCcEEEEEECCCCCEEEEEe
Q 002494 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGSR-VDYDAPGNWCTMMAYSADGTRLFSCG 560 (915)
Q Consensus 485 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~~~~ 560 (915)
. .+.....+.|........|-. ..+++++ .++.+.+||....... .....|.+.++++++-|....+++|+
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred C-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 5 667777888998888888754 3466654 4788999997543322 23367888999999999999999998
Q ss_pred ecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcC
Q 002494 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (915)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 628 (915)
. +|.|.+||++..+.+++++. ++ ...+|++|+..|.++||++..-..+..++.
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 5 67799999998877766654 44 567899999999999999998877777754
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-07 Score=112.05 Aligned_cols=246 Identities=14% Similarity=0.119 Sum_probs=160.9
Q ss_pred EEEEEcCC-CCEEEEEECCCeEEEEEecCCCceeeeEEe--e---------cccCCeeEEEEecCCCeEEEEEEeCCCcE
Q 002494 412 NRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEI--D---------AHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (915)
Q Consensus 412 ~~~~~spd-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~---------~h~~~v~~~~~s~~~~~~~l~s~~~d~~i 479 (915)
..++++++ +..+++-+.++.|.++|..+ ..+...... . ++-.....++++++++. ++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~-LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL-LYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE-EEEEeCCCceE
Confidence 46788875 55666667788999999865 322211110 0 01123578999998874 34444556789
Q ss_pred EEEEcCCCeeEEEecCC-----------------CCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecC---
Q 002494 480 KVWDVVAGRKQYTFEGH-----------------EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--- 539 (915)
Q Consensus 480 ~vwd~~~~~~~~~~~~~-----------------~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--- 539 (915)
+++|..++. +.++.+. -..-+.++++++ ++.++++.+.++.|++||..++.... +.+
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~ 725 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGY 725 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECCCCeEEEEECCCCeEEE-EecCCc
Confidence 999987764 3333210 012356888874 34677788888999999987653321 111
Q ss_pred ------------CCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecC-------------CCC------
Q 002494 540 ------------PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG-------------FRK------ 588 (915)
Q Consensus 540 ------------~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-------------~~~------ 588 (915)
.......++++|+|+.|+++.. +++.|++||+.++.......+ ..+
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs---~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS---ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence 0123567999999997776653 467899999987653211100 000
Q ss_pred -CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCC-----------CCCCCcceEEEcCCCCEEEEEeCCCcE
Q 002494 589 -RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----------GGLPASPRLRFNKEGSLLAVTTSDNGI 656 (915)
Q Consensus 589 -~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~v~~s~~~~~l~s~~~dg~i 656 (915)
.....++++++|+.+++-+.+++|++||..++......... ........++++++|+++++-+.++.|
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 02357889999998888888999999999877655333210 111245789999999999988899999
Q ss_pred EEEEcCCCc
Q 002494 657 KILANSDGV 665 (915)
Q Consensus 657 ~iwd~~~~~ 665 (915)
++||+.++.
T Consensus 883 rvid~~~~~ 891 (1057)
T PLN02919 883 RYLDLNKGE 891 (1057)
T ss_pred EEEECCCCc
Confidence 999999873
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-07 Score=104.32 Aligned_cols=261 Identities=12% Similarity=0.089 Sum_probs=158.8
Q ss_pred CCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 002494 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYT 436 (915)
Q Consensus 357 d~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd 436 (915)
++. .+++++.+|.+..+|..+|+.+.. ... .+.+.+.-.. .+..++.++.++.+..||
T Consensus 104 ~~~-~v~v~~~~g~l~ald~~tG~~~W~-------~~~-------------~~~~~~~p~v-~~~~v~v~~~~g~l~a~d 161 (377)
T TIGR03300 104 DGG-LVFVGTEKGEVIALDAEDGKELWR-------AKL-------------SSEVLSPPLV-ANGLVVVRTNDGRLTALD 161 (377)
T ss_pred cCC-EEEEEcCCCEEEEEECCCCcEeee-------ecc-------------CceeecCCEE-ECCEEEEECCCCeEEEEE
Confidence 344 356788899999999999986643 211 1111110001 345677777899999999
Q ss_pred ecCCCceeeeEEeecccCCe-----eEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCC-------CEEEEE
Q 002494 437 YNPTGELRQHLEIDAHVGGV-----NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-------PVYSVC 504 (915)
Q Consensus 437 ~~~~~~~~~~~~~~~h~~~v-----~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-------~v~~i~ 504 (915)
.++|+.+... ......+ .+.... + . .++.+..++.+..+|..+|+.+........ ....+.
T Consensus 162 ~~tG~~~W~~---~~~~~~~~~~~~~sp~~~-~-~--~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~ 234 (377)
T TIGR03300 162 AATGERLWTY---SRVTPALTLRGSASPVIA-D-G--GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVD 234 (377)
T ss_pred cCCCceeeEE---ccCCCceeecCCCCCEEE-C-C--EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccC
Confidence 9998765422 1111110 111222 2 3 467788889999999999987654431100 000111
Q ss_pred eecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEec
Q 002494 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (915)
Q Consensus 505 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (915)
-+|.-.+..++.++.+|.+..||..+++......... ..... .++..+++++ .++.++.+|..+|+.+....
T Consensus 235 ~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~~~p~--~~~~~vyv~~----~~G~l~~~d~~tG~~~W~~~ 306 (377)
T TIGR03300 235 GDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--YQGPA--VDDNRLYVTD----ADGVVVALDRRSGSELWKND 306 (377)
T ss_pred CccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--ccCce--EeCCEEEEEC----CCCeEEEEECCCCcEEEccc
Confidence 1111122478888899999999998876655443211 11222 2455666665 37789999999998877663
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 002494 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (915)
Q Consensus 585 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw 659 (915)
............ .+..+++++.+|.|+++|..+++.+..++.+... ...+..+. +..|+.++.||.|..|
T Consensus 307 ~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~-~~~sp~~~--~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 307 ELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSG-IASPPVVV--GDGLLVQTRDGDLYAF 376 (377)
T ss_pred cccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc-cccCCEEE--CCEEEEEeCCceEEEe
Confidence 322212222222 4678999999999999999999999988765431 11222332 3458889999998765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.5e-07 Score=97.85 Aligned_cols=217 Identities=12% Similarity=0.098 Sum_probs=134.5
Q ss_pred CeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEe--CCCcEEEEEcCCCeeEEEecCCCCCEEEEEeec
Q 002494 430 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (915)
Q Consensus 430 g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 507 (915)
..|.+-|.+... .+ .+... +......|+|||+..++++.. .+..|+++|+.+++..... ...+......|+|
T Consensus 169 ~~l~~~d~dg~~-~~---~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SP 242 (419)
T PRK04043 169 SNIVLADYTLTY-QK---VIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSK 242 (419)
T ss_pred ceEEEECCCCCc-ee---EEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECC
Confidence 456666665533 22 12222 367889999999852233222 2457999999888654433 3455566678888
Q ss_pred CCCccEEEEEeCC--CeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecC
Q 002494 508 KESIQFIFSTAID--GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (915)
Q Consensus 508 ~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (915)
++. ..+++.+.+ ..|.++|+..+.. ..+...........|+|||+.|+..+. ..+...|++.|+.+++..+....
T Consensus 243 DG~-~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 243 DGS-KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVEQVVFH 319 (419)
T ss_pred CCC-EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEeCccC
Confidence 643 344444444 4577778766543 333323323345689999999987763 33456799999988776443322
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCC--
Q 002494 586 FRKRSLGVVQFDTTRNRFLAAGDE---------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN-- 654 (915)
Q Consensus 586 ~~~~~v~~~~~sp~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg-- 654 (915)
.. . ...|+|+|+.++..+.. ..|++.|+.++.. ..+.... ......|+|||+.|+..+.++
T Consensus 320 g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~---~~~~p~~SPDG~~I~f~~~~~~~ 391 (419)
T PRK04043 320 GK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANG---VNQFPRFSSDGGSIMFIKYLGNQ 391 (419)
T ss_pred CC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCC---CcCCeEECCCCCEEEEEEccCCc
Confidence 11 1 24899999998876643 3688889888764 3343322 234689999999888776532
Q ss_pred -cEEEEEcCC
Q 002494 655 -GIKILANSD 663 (915)
Q Consensus 655 -~i~iwd~~~ 663 (915)
.+.+.++..
T Consensus 392 ~~L~~~~l~g 401 (419)
T PRK04043 392 SALGIIRLNY 401 (419)
T ss_pred EEEEEEecCC
Confidence 355566644
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.6e-09 Score=110.71 Aligned_cols=297 Identities=11% Similarity=0.183 Sum_probs=190.6
Q ss_pred EEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCC
Q 002494 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (915)
Q Consensus 340 ~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 419 (915)
.-.++-.+.+.++..+|.|+. +|.++.-| +.+-|+...-.... | +..-..-.|-.+.|+|.
T Consensus 18 slsl~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p~~ppr-----~------------l~h~tpw~vad~qws~h 78 (1081)
T KOG0309|consen 18 SLSLKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDPFTPPR-----W------------LHHITPWQVADVQWSPH 78 (1081)
T ss_pred eeEEEecCcccceeeccccch-hhhhhhcC-eEEEeccCCCCCce-----e------------eeccCcchhcceecccC
Confidence 344556778999999999986 45666554 44556554211100 0 00111234666778875
Q ss_pred CC--EEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC-eeEEEecCC
Q 002494 420 GL--MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGH 496 (915)
Q Consensus 420 ~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~ 496 (915)
.. +-++......-.+|++.....-.....+.+|...|+++-|.|.... ++++++.|..+..||+++. .++..+..-
T Consensus 79 ~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w 157 (1081)
T KOG0309|consen 79 PAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSW 157 (1081)
T ss_pred CCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeecc
Confidence 43 3344444445568998765544444567899999999999999887 8999999999999999875 445555555
Q ss_pred CCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCcee-EecCCCCcEEEEEECCCC-CEEEEEeecCCCCceEEEEEC
Q 002494 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNE 574 (915)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~sp~g-~~l~~~~~~~~~~~~i~~wd~ 574 (915)
...-..+.|+... + .+.+.+..+.|++||.+.+..+. .++.+...++.+.|..-- ..+.+++ .|++++.||.
T Consensus 158 ~s~asqVkwnyk~-p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~----~d~tvkfw~y 231 (1081)
T KOG0309|consen 158 RSAASQVKWNYKD-P-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS----NDGTVKFWDY 231 (1081)
T ss_pred cccCceeeecccC-c-chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC----CCCceeeecc
Confidence 5666778888753 2 45666777889999999876544 566677778888876532 2344544 4888999998
Q ss_pred CCCeeEEEecCCCCCceEEEEEcCCCCEEEE--EeCCCcEEEE---------eCCC-CceEEEEcCCCCCCCcceEEEcC
Q 002494 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AGDEFQIKFW---------DMDN-MNMLTTVDADGGLPASPRLRFNK 642 (915)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s--~~~dg~i~iw---------d~~~-~~~~~~~~~~~~~~~v~~v~~s~ 642 (915)
.............+.++..-.+-|-|.-.+. .-.+..+.++ +..+ .+++..+.+|.. .|....|-.
T Consensus 232 ~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR~ 309 (1081)
T KOG0309|consen 232 SKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWRK 309 (1081)
T ss_pred cccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HHHHHhhhh
Confidence 6543332222223335666666665543332 1112233333 3332 367888888866 555555533
Q ss_pred C----------CCEEEEEeCCCcEEEEEcCCC
Q 002494 643 E----------GSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 643 ~----------~~~l~s~~~dg~i~iwd~~~~ 664 (915)
. .-.|++-+.|..+++|-+.+.
T Consensus 310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 310 RKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 2 237899999999999988754
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-08 Score=96.87 Aligned_cols=253 Identities=16% Similarity=0.195 Sum_probs=158.2
Q ss_pred CccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCc--eeeeEEeeccc------------CCeeEEEEecCCCeEEEEE
Q 002494 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE--LRQHLEIDAHV------------GGVNDIAFAHPNKQLCIVT 472 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~h~------------~~v~~~~~s~~~~~~~l~s 472 (915)
....|+++.|...|.||++|...|.|.++.-+.... .+-...+++|. ..|..+.|..++....++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 456799999999999999999999999997654331 11122344453 3578888887665546778
Q ss_pred EeCCCcEEEEEcCCCeeEEEec---------CCCCCEEEEEeecCCCccEEEEEe-CCCeEEEEecCCCCceeEecCCCC
Q 002494 473 CGDDKMIKVWDVVAGRKQYTFE---------GHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGSRVDYDAPGN 542 (915)
Q Consensus 473 ~~~d~~i~vwd~~~~~~~~~~~---------~~~~~v~~i~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~ 542 (915)
.+.|++|++|.+........-+ ...+++++..- -.+--.+ .|..|... .+...-..|..
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~------l~lprls~hd~iiaa~-----p~rvyaNaH~y 173 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKE------LLLPRLSEHDEIIAAK-----PCRVYANAHPY 173 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHH------hhcccccccceEEEec-----cceecccccee
Confidence 8899999999987542211100 01122221100 0000000 11111111 01111234666
Q ss_pred cEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCe---eEEEecCCCC----CceEEEEEcCCC-CEEEEEeCCCcEEE
Q 002494 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRK----RSLGVVQFDTTR-NRFLAAGDEFQIKF 614 (915)
Q Consensus 543 ~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~----~~v~~~~~sp~~-~~l~s~~~dg~i~i 614 (915)
.+.+++|+.|...++++. +-.|.+|++.-.. .+..++.|.. ..|++..|+|.. +.+.-.+..|.|++
T Consensus 174 hiNSiS~NsD~et~lSaD-----dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 174 HINSISFNSDKETLLSAD-----DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred EeeeeeecCchheeeecc-----ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 789999999999998874 7779999986322 2233343332 167888999965 45556778899999
Q ss_pred EeCCCCce------EEE--EcC------CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCC
Q 002494 615 WDMDNMNM------LTT--VDA------DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAM 676 (915)
Q Consensus 615 wd~~~~~~------~~~--~~~------~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 676 (915)
-|++...+ +.. +.+ .+-...|..+.|+++|++|++-+. -+|+|||+...+.+++++.-|..
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~ 323 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCD 323 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHH
Confidence 99984211 111 111 011236788999999999988765 67999999988888888876654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-06 Score=106.23 Aligned_cols=259 Identities=10% Similarity=0.095 Sum_probs=159.3
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEE-C
Q 002494 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF-S 428 (915)
Q Consensus 350 ~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~-~ 428 (915)
..+++++++..++++-+.++.|.+||..+........ ...........-...-.....++++++++.|.++. .
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~------~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS------TGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc------CCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 4678888654577777788899999986532211000 00000000000011223467899999988766654 4
Q ss_pred CCeEEEEEecCCCceeeeEE-------eec-------ccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEec
Q 002494 429 KHIVHLYTYNPTGELRQHLE-------IDA-------HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (915)
Q Consensus 429 dg~i~vwd~~~~~~~~~~~~-------~~~-------h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 494 (915)
++.|+++|..++. +..... ..+ .-...+.++|+|++.. ++++.+.++.|++||..++... .+.
T Consensus 645 n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~v~-~~~ 721 (1057)
T PLN02919 645 NHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGVTR-VFS 721 (1057)
T ss_pred CceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCeEE-EEe
Confidence 5789999987743 221100 000 0123468999996554 6777788899999998776542 221
Q ss_pred CC---------------CCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecC-------------C------
Q 002494 495 GH---------------EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------------P------ 540 (915)
Q Consensus 495 ~~---------------~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------~------ 540 (915)
+. -.....++++++++ .++++.+.++.|++||+++........+ .
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~-~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLK-ELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCC-EEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 11 12345678887542 3566667789999999886543221100 0
Q ss_pred --CCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCC------------CCceEEEEEcCCCCEEEEE
Q 002494 541 --GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------------KRSLGVVQFDTTRNRFLAA 606 (915)
Q Consensus 541 --~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------~~~v~~~~~sp~~~~l~s~ 606 (915)
......++++++|+.+++-. .++.|++||..++.......... -.....++++++|+.+++-
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs----~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADS----YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEEC----CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 01245889999998655544 37789999998776543321100 0145678999999988888
Q ss_pred eCCCcEEEEeCCCCce
Q 002494 607 GDEFQIKFWDMDNMNM 622 (915)
Q Consensus 607 ~~dg~i~iwd~~~~~~ 622 (915)
+.++.|++||+.+++.
T Consensus 877 t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 877 TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCEEEEEECCCCcc
Confidence 8899999999998765
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.3e-09 Score=121.65 Aligned_cols=225 Identities=13% Similarity=0.154 Sum_probs=165.0
Q ss_pred CEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecC-CCCC
Q 002494 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-HEAP 499 (915)
Q Consensus 421 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~ 499 (915)
+.+..+..++...-|.-+.+.. .+..+-..|.++.=+|... +.+||+.||.+++|....+..+..++. ....
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~ 2253 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSR 2253 (2439)
T ss_pred ccCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcch
Confidence 3444444455555555444322 2233445688888888888 789999999999999988888777753 3377
Q ss_pred EEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCC-e
Q 002494 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-A 578 (915)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~-~ 578 (915)
|+.+.|+.. |+.+..+..||.+.+|.+. .+.....+.|......+.|-. ..+++++.+.+ ++.+.+||..-. .
T Consensus 2254 vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~~ 2327 (2439)
T KOG1064|consen 2254 VTRSRFNHQ--GNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPPM 2327 (2439)
T ss_pred hhhhhhccc--CCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCcc
Confidence 888888764 4688889999999999877 444555666777777787765 56777776555 777999996422 1
Q ss_pred eEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 002494 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (915)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~i 658 (915)
.-.....|.+ .++++++-|..+.|++||.+|.|++||++..++++.++. ++ ...++++|+..|.|+|
T Consensus 2328 ~s~v~~~H~~-gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikI 2394 (2439)
T KOG1064|consen 2328 NSLVHTCHDG-GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKI 2394 (2439)
T ss_pred cceeeeecCC-CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEE
Confidence 1112266776 899999999999999999999999999998887776654 33 4678999999999999
Q ss_pred EEcCCCceeeeecc
Q 002494 659 LANSDGVRLLRMLE 672 (915)
Q Consensus 659 wd~~~~~~~~~~~~ 672 (915)
|++..- .++.++.
T Consensus 2395 w~~s~~-~ll~~~p 2407 (2439)
T KOG1064|consen 2395 WRLSEF-GLLHTFP 2407 (2439)
T ss_pred EEcccc-chhhcCc
Confidence 999866 4554443
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.3e-09 Score=106.99 Aligned_cols=243 Identities=14% Similarity=0.182 Sum_probs=168.4
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCC-ce---eeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-EL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~-~~---~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i 479 (915)
+.+|...|..++--.+.+.+++++.|.+|++|.++... .+ ...+++..|+.+|.++.|-.+.+ +++ +.||-|
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~--ScD~gi 806 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIA--SCDGGI 806 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eee--eccCcc
Confidence 67899999998887888899999999999999987532 22 24557789999999999998877 455 458899
Q ss_pred EEEEcCCCeeEEEecC--CCCCEEEEEeecCCCccEEEEE-eCCCeEEEEecCCCCceeEec-----CCCCcEEEEEECC
Q 002494 480 KVWDVVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYD-----APGNWCTMMAYSA 551 (915)
Q Consensus 480 ~vwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~sp 551 (915)
.+||.--|+.+..+.. ..+.+..+...++-+...++.| +...+|+++|.+..+....+. ++...+.+++..+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 9999887776654321 1222333333333333455555 678899999999877655443 3445788999999
Q ss_pred CCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEE-EeCCCCceEEEEcCCC
Q 002494 552 DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF-WDMDNMNMLTTVDADG 630 (915)
Q Consensus 552 ~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~ 630 (915)
.|+.++.+-. .|.|.+.|.++|+.+.......- ....++ .|..+.++....|.++.+ |..-++....+.+...
T Consensus 887 ~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kppp 960 (1034)
T KOG4190|consen 887 KGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPP 960 (1034)
T ss_pred CcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCC
Confidence 9999998764 77899999999998877665433 222232 356677887778888888 9887776555544322
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 002494 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (915)
Q Consensus 631 ~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd 660 (915)
. +..- ...-|.-++++.....+.+|.
T Consensus 961 e--pahf--lqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 961 E--PAHF--LQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred c--chhh--hhccCceeEEeccCcEEEEEe
Confidence 1 1100 111256677777666677774
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=104.88 Aligned_cols=287 Identities=10% Similarity=0.093 Sum_probs=180.6
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCc-eecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l 423 (915)
|...|..++--.+.+ -+++++.|.+|++|.++... .+.+ .. ....+..|..+|..+.|-.+-+++
T Consensus 734 H~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~t-sa------------CQfTY~aHkk~i~~igfL~~lr~i 799 (1034)
T KOG4190|consen 734 HQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGT-SA------------CQFTYQAHKKPIHDIGFLADLRSI 799 (1034)
T ss_pred cHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCcccc-ce------------eeeEhhhccCcccceeeeecccee
Confidence 888888887554444 36789999999999997532 2211 10 112257799999999999998888
Q ss_pred EEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecC-CCeEEEEEEeCCCcEEEEEcCCCeeEEEec-----CCC
Q 002494 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-----GHE 497 (915)
Q Consensus 424 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-----~~~ 497 (915)
+++ ||.|++||.--+..+.+...-..| +.+..+..-++ ...++++.++...+|+++|.+.+.....++ +..
T Consensus 800 ~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 800 ASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred eec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 766 789999998776655432221222 23333333343 333244445888999999999887666554 234
Q ss_pred CCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEE-EECCC
Q 002494 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE-WNESE 576 (915)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~-wd~~~ 576 (915)
..+.++++.+. |+.++.+-.+|.|.+.|.+++..+..+.........++- |..+.++.... +..+.+ |..-+
T Consensus 877 a~~R~iaVa~~--GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sal----dHslaVnWhald 949 (1034)
T KOG4190|consen 877 ALTRAIAVADK--GNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSAL----DHSLAVNWHALD 949 (1034)
T ss_pred hheeEEEeccC--cchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcc----cceeEeeehhcC
Confidence 55788888765 478999999999999999988766555443333333332 44555554443 555777 88777
Q ss_pred CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC----CceEEEEcCCCCCCCcceEEEcCCCCEEEEEeC
Q 002494 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN----MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (915)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~ 652 (915)
|....+.+.... +..-+ ..-|..++++...+.+.+|.-.. ...+..+....-.+..++++.-|-+.-+..|..
T Consensus 950 gimh~q~kpppe-pahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne 1026 (1034)
T KOG4190|consen 950 GIMHLQDKPPPE-PAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNE 1026 (1034)
T ss_pred CeeeeccCCCCc-chhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCC
Confidence 766555544332 22211 22356677777777777775321 112222322222235677887786666667778
Q ss_pred CCcEEE
Q 002494 653 DNGIKI 658 (915)
Q Consensus 653 dg~i~i 658 (915)
.|.|.+
T Consensus 1027 ~G~IaL 1032 (1034)
T KOG4190|consen 1027 HGAIAL 1032 (1034)
T ss_pred CCceee
Confidence 887765
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.8e-07 Score=85.69 Aligned_cols=148 Identities=9% Similarity=-0.032 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeE
Q 002494 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (915)
Q Consensus 411 v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 490 (915)
+.++++++|++++++.+....|..|.+....+...........+.-.+..|+.... .+|++..||++.|||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 88999999999999999999999999987654332222333445567789998877 6999999999999999864322
Q ss_pred E-----EecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCC--------cEEEEEECCCCCEEE
Q 002494 491 Y-----TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--------WCTMMAYSADGTRLF 557 (915)
Q Consensus 491 ~-----~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~i~~~~~sp~g~~l~ 557 (915)
. +-..|.+.+..+.|++.+.-.+|+..-.-+.+.+.|+++......+..... .+....|+.++..+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 2 223588999999999866656777777788999999998765443322221 255555665555544
Q ss_pred EEe
Q 002494 558 SCG 560 (915)
Q Consensus 558 ~~~ 560 (915)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 443
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.7e-09 Score=115.51 Aligned_cols=217 Identities=13% Similarity=0.195 Sum_probs=157.8
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCC-cEEEE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-MIKVW 482 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~-~i~vw 482 (915)
+..|....+|++|+-+.+.|+.|+..|.|+++++.+|.... ...+|..+|+.+.=+.+|.. .|.+++... -..+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHh
Confidence 67788999999999999999999999999999999987665 66789999999999999984 333333333 56789
Q ss_pred EcCC-CeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecC----CCCcEEEEEECCCCCEEE
Q 002494 483 DVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA----PGNWCTMMAYSADGTRLF 557 (915)
Q Consensus 483 d~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~sp~g~~l~ 557 (915)
++.+ +...++|.+ -.++.|+... +.-+.|.......+||+.+.....++-. ....-+++.|+|+.+.++
T Consensus 1173 ~~~s~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 9764 445555542 3456665442 3334444446788999998876654221 122347789999998877
Q ss_pred EEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcce
Q 002494 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (915)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (915)
- +| .+||.+..+.++.|..... .+ .-.|+|.|..++.-+ .|||+++-+.++..+.-. -..
T Consensus 1247 n-------dG--vLWDvR~~~aIh~FD~ft~-~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld----qc~ 1306 (1516)
T KOG1832|consen 1247 N-------DG--VLWDVRIPEAIHRFDQFTD-YG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD----QCA 1306 (1516)
T ss_pred e-------Cc--eeeeeccHHHHhhhhhhee-cc-cccccCCCceEEeec-----hhhhhHHHHHHhcCcccc----ceE
Confidence 4 33 3799998888887765543 22 235999999998865 489999998888776543 256
Q ss_pred EEEcCCCCEEEEE
Q 002494 638 LRFNKEGSLLAVT 650 (915)
Q Consensus 638 v~~s~~~~~l~s~ 650 (915)
+.|+..|..++..
T Consensus 1307 VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1307 VTFNSTGDVMYAM 1319 (1516)
T ss_pred EEeccCccchhhh
Confidence 8899988877644
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.4e-06 Score=80.36 Aligned_cols=246 Identities=9% Similarity=0.073 Sum_probs=135.6
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCC
Q 002494 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (915)
Q Consensus 351 ~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg 430 (915)
.++.++||+ +||+ -.|..|.|=..++.=.....+. .+.++....=.-++||||+..||.+...|
T Consensus 2 ~~~~~~~Gk-~lAi-~qd~~iEiRsa~Ddf~si~~kc--------------qVpkD~~PQWRkl~WSpD~tlLa~a~S~G 65 (282)
T PF15492_consen 2 HLALSSDGK-LLAI-LQDQCIEIRSAKDDFSSIIGKC--------------QVPKDPNPQWRKLAWSPDCTLLAYAESTG 65 (282)
T ss_pred ceeecCCCc-EEEE-EeccEEEEEeccCCchheeEEE--------------ecCCCCCchheEEEECCCCcEEEEEcCCC
Confidence 356788897 5554 4577777765544311110011 11233444556799999999999999999
Q ss_pred eEEEEEecCCCceeeeEE---ee-cccCCeeEEEEecCC-----CeEEEEEEeCCCcEEEEEcCCC-----eeEEEec--
Q 002494 431 IVHLYTYNPTGELRQHLE---ID-AHVGGVNDIAFAHPN-----KQLCIVTCGDDKMIKVWDVVAG-----RKQYTFE-- 494 (915)
Q Consensus 431 ~i~vwd~~~~~~~~~~~~---~~-~h~~~v~~~~~s~~~-----~~~~l~s~~~d~~i~vwd~~~~-----~~~~~~~-- 494 (915)
+|+++|+.+... ..+.. .. .-...|..+.|.+.. .. -|+.-..+|.++-|-+..+ +..+++.
T Consensus 66 ~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~ 143 (282)
T PF15492_consen 66 TIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS 143 (282)
T ss_pred eEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEec
Confidence 999999986432 21111 11 123467777776432 11 3555667777777765322 2333333
Q ss_pred C-CCCCEEEEEeecCCCccEEEEEeCCCe-EEEEecCCCCceeEecCCCCcEEEEEE---CCCCCEEEEEeecCCC--Cc
Q 002494 495 G-HEAPVYSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYDAPGNWCTMMAY---SADGTRLFSCGTSKEG--ES 567 (915)
Q Consensus 495 ~-~~~~v~~i~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~---sp~g~~l~~~~~~~~~--~~ 567 (915)
. +...|.++.++|.. ++|+.|+.... -..+ ......+++-.. +|..+.+. ...+.-. ..
T Consensus 144 ~~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~-~~~~~~~~~~~ 209 (282)
T PF15492_consen 144 SHYPHGINSAVYHPKH--RLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVT-SSEDDITASSK 209 (282)
T ss_pred ccCCCceeEEEEcCCC--CEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEcc-ccCcccccccc
Confidence 2 46789999999875 46666654221 0000 011111222211 12221111 1100000 00
Q ss_pred eEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCC
Q 002494 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (915)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 629 (915)
+..+|.+-+.+.. ...+.....|..+..||||..|++...+|.|.+|++.+-+.......+
T Consensus 210 ~~~~~~~~~~~~f-s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 210 RRGLLRIPSFKFF-SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccceeeccceeee-eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 1223433322221 122333338999999999999999999999999999987777666543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-07 Score=89.30 Aligned_cols=210 Identities=12% Similarity=0.179 Sum_probs=126.7
Q ss_pred EEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEEC
Q 002494 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (915)
Q Consensus 349 V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~ 428 (915)
|..+.|+.+- .|+++..++.+.......+.+... |+-.. ...+...+..|.++-.+-+.+-.++.++++..
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~--~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDD--GIDPFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEech-----hhccc--CcCceeeeeccCCCCCcccccccCCceEecCC
Confidence 7777777664 578888888888777665544321 11100 01111223334444444445556788999999
Q ss_pred CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEe-----CCCcEEEEEcCCCeeEEEecCCCCCEEEE
Q 002494 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-----DDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (915)
Q Consensus 429 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 503 (915)
||.+.+.+.+.-..+.. .+..-...-.+.++...+. ++.+++ .-+..+.|+++..+....-......|.++
T Consensus 110 dg~~~v~s~~~~~~~~~--~i~~~~~~~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l 185 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALMS--RIPSIHSGSASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTAL 185 (319)
T ss_pred CceEEEEechHHHhhhh--hcccccccccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchhh
Confidence 99999998765221111 1111111122233334444 333322 12344556655332221111123448899
Q ss_pred EeecCCCccEEEEEeCCCeEEEEecCCCCcee-EecCCCCcEEEEEECC-CCCEEEEEeecCCCCceEEEEECCC
Q 002494 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESE 576 (915)
Q Consensus 504 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~sp-~g~~l~~~~~~~~~~~~i~~wd~~~ 576 (915)
+-+|... +.+++|+.||.+-+||.+....+. .+..|..++..+-|+| ++..|++++. +|.+..||..+
T Consensus 186 ~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 186 CSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 9888754 788999999999999999876554 4567888999999998 5678888875 77799999764
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-05 Score=88.23 Aligned_cols=276 Identities=10% Similarity=0.052 Sum_probs=160.4
Q ss_pred EEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCC-ccCeE-EEEEcCCCCEEEEEECCCeEEEEEecC
Q 002494 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA-AISVN-RCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (915)
Q Consensus 362 l~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~-~~~~spd~~~l~s~~~dg~i~vwd~~~ 439 (915)
+++++.+|.+.-+|..+|+.+ |..+..... ..+... ...+. .+.. ++..++.++.+|.+.-+|.++
T Consensus 72 vy~~~~~g~l~ald~~tG~~~-------W~~~~~~~~---~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~t 139 (394)
T PRK11138 72 VYAADRAGLVKALDADTGKEI-------WSVDLSEKD---GWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAED 139 (394)
T ss_pred EEEECCCCeEEEEECCCCcEe-------eEEcCCCcc---cccccccccccccccEE--ECCEEEEEcCCCEEEEEECCC
Confidence 566777899999999999865 433211100 000000 00000 0111 356777788899999999999
Q ss_pred CCceeeeEEeecccCCeeE-EEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEE-EEeecCCCccEEEEE
Q 002494 440 TGELRQHLEIDAHVGGVND-IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS-VCPHHKESIQFIFST 517 (915)
Q Consensus 440 ~~~~~~~~~~~~h~~~v~~-~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~-i~~~~~~~~~~l~s~ 517 (915)
|+.+.... + . +.+.+ .... ++ .++.++.++.+.-+|..+|+.+..+......+.. ..-+|.-.+..++.+
T Consensus 140 G~~~W~~~-~--~-~~~~ssP~v~-~~---~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~ 211 (394)
T PRK11138 140 GEVAWQTK-V--A-GEALSRPVVS-DG---LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVG 211 (394)
T ss_pred CCCccccc-C--C-CceecCCEEE-CC---EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEE
Confidence 88765321 1 1 12221 1222 33 3666778899999999999988777532111100 000111011357777
Q ss_pred eCCCeEEEEecCCCCceeEecCCCC-------cEEEEEECC--CCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCC
Q 002494 518 AIDGKIKAWLYDYLGSRVDYDAPGN-------WCTMMAYSA--DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588 (915)
Q Consensus 518 ~~dg~i~iwd~~~~~~~~~~~~~~~-------~i~~~~~sp--~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 588 (915)
+.+|.+..+|..+++.......... ....+..+| .+..++.++. ++.++.+|..+|+.+.+.....
T Consensus 212 ~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~----~g~l~ald~~tG~~~W~~~~~~- 286 (394)
T PRK11138 212 GDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY----NGNLVALDLRSGQIVWKREYGS- 286 (394)
T ss_pred cCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc----CCeEEEEECCCCCEEEeecCCC-
Confidence 8899999999887765544321110 011111222 2345555543 6679999999998876654221
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 002494 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668 (915)
Q Consensus 589 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 668 (915)
...+. ..+..++.++.+|.++.+|..+|+.+......... ...+... .+..|+.++.||.++..|..+| +.+
T Consensus 287 --~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG-~~~ 358 (394)
T PRK11138 287 --VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR-LLTAPVL--YNGYLVVGDSEGYLHWINREDG-RFV 358 (394)
T ss_pred --ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC-cccCCEE--ECCEEEEEeCCCEEEEEECCCC-CEE
Confidence 11122 24667888889999999999999887655422111 1222222 2567888999999999999999 444
Q ss_pred ee
Q 002494 669 RM 670 (915)
Q Consensus 669 ~~ 670 (915)
..
T Consensus 359 ~~ 360 (394)
T PRK11138 359 AQ 360 (394)
T ss_pred EE
Confidence 33
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.4e-06 Score=81.96 Aligned_cols=243 Identities=12% Similarity=0.088 Sum_probs=153.4
Q ss_pred EEEEEeecCCCccEEEEEeCCCe-EEEEecCCCCceeEecCCCC--cEEEEEECCCCCEEEEEeecC-CCCceEEEEECC
Q 002494 500 VYSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSK-EGESHLVEWNES 575 (915)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~--~i~~~~~sp~g~~l~~~~~~~-~~~~~i~~wd~~ 575 (915)
...++.+|.. +..++.+-.-|+ ..+||..++.....+..... -.-.-+||+||++|++.-.+. .+.+.|-+||..
T Consensus 7 gH~~a~~p~~-~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTR-PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCC-CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 3456677743 367777777776 67899988887766654433 223568999999998775432 367899999998
Q ss_pred -CCeeEEEecCCCCCceEEEEEcCCCCEEEEEe------------------CCCcEEEEeCCCCceEEEEcC--CCCCCC
Q 002494 576 -EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG------------------DEFQIKFWDMDNMNMLTTVDA--DGGLPA 634 (915)
Q Consensus 576 -~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~------------------~dg~i~iwd~~~~~~~~~~~~--~~~~~~ 634 (915)
+.+.+.++..+.- .-..+.+.|||+.|+++. .+.++...|..+|+.+.+... ..+..+
T Consensus 86 ~~~~ri~E~~s~GI-GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 86 RGYRRIGEFPSHGI-GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred CCcEEEeEecCCCc-ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 6677888887655 556788999997777653 123566678888988877554 334558
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCcccCCC
Q 002494 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (915)
Q Consensus 635 v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 714 (915)
+..++++++|..++..-..|.-. ....++........ ...+
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~-----~~~PLva~~~~g~~-~~~~--------------------------------- 205 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPG-----DAPPLVALHRRGGA-LRLL--------------------------------- 205 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCC-----ccCCeEEEEcCCCc-ceec---------------------------------
Confidence 99999999988776655443210 01011222111110 0000
Q ss_pred CCCCCcccccccC--CCceeccCCceeeccCC--CceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEe
Q 002494 715 RGPPAVSISSLGT--IDGSRLVDVKPRVAEDV--DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL 790 (915)
Q Consensus 715 ~~~~~~~~~~~~~--~~~~~s~dg~~la~~~~--~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~ 790 (915)
.-+......+.+ .+++++.++.++++++- +.+.+||..+ +..+....++ .+..++-.+++ ++++.
T Consensus 206 -~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t---g~~~~~~~l~------D~cGva~~~~~-f~~ss 274 (305)
T PF07433_consen 206 -PAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT---GRLLGSVPLP------DACGVAPTDDG-FLVSS 274 (305)
T ss_pred -cCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC---CCEeeccccC------ceeeeeecCCc-eEEeC
Confidence 001111122333 46788999998887777 8999998875 4444433333 36777777777 66666
Q ss_pred eccc
Q 002494 791 ASNA 794 (915)
Q Consensus 791 ~~dg 794 (915)
+...
T Consensus 275 G~G~ 278 (305)
T PF07433_consen 275 GQGQ 278 (305)
T ss_pred CCcc
Confidence 6544
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-05 Score=80.06 Aligned_cols=218 Identities=18% Similarity=0.182 Sum_probs=139.8
Q ss_pred EEEEcC-CCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEe-cCCCeEEEEEEeCCCcEEEEEcCCCeeE
Q 002494 413 RCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (915)
Q Consensus 413 ~~~~sp-d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 490 (915)
++.|.+ ++.++++--..+.|+.|+..++... .+.. . ....+++. +++. ++.+... .+.++|..+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~----~~~~-~-~~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE----VIDL-P-GPNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE----EEES-S-SEEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE----EEec-C-CCceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 578998 6666666667899999999886422 1221 1 27777887 5654 4555544 4566698888654
Q ss_pred EEecC-----CCCCEEEEEeecCCCccEEEEEeCC--------CeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEE
Q 002494 491 YTFEG-----HEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (915)
Q Consensus 491 ~~~~~-----~~~~v~~i~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 557 (915)
..... .....+.+++.++ |++.++.... |.+..++.. .+ .......-...+.++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchhee
Confidence 33322 3355678888774 4666665543 456666665 23 332222344568999999999887
Q ss_pred EEeecCCCCceEEEEECCC-Ce-e--EEEe---cCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCC
Q 002494 558 SCGTSKEGESHLVEWNESE-GA-I--KRTY---SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630 (915)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~-~~-~--~~~~---~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (915)
.+.. ..+.|..+++.. +. . ...+ ....+ ....++++.+|+..++....+.|.+++.+ |+.+..+....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~ 224 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPG-YPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV 224 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSC-EEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCc-CCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC
Confidence 6543 466788888853 22 1 1222 22222 47789999999988887788999999998 88888887764
Q ss_pred CCCCcceEEEc-CCCCEEEEEe
Q 002494 631 GLPASPRLRFN-KEGSLLAVTT 651 (915)
Q Consensus 631 ~~~~v~~v~~s-~~~~~l~s~~ 651 (915)
. .+++++|. ++.+.|+..+
T Consensus 225 ~--~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 P--RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp S--SEEEEEEESTTSSEEEEEE
T ss_pred C--CEEEEEEECCCCCEEEEEe
Confidence 3 78999994 6666555543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.8e-06 Score=84.99 Aligned_cols=250 Identities=13% Similarity=0.135 Sum_probs=148.6
Q ss_pred ccCCCccCeEEEEEcCCCC-EEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEE
Q 002494 403 LLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (915)
Q Consensus 403 ~~~~~~~~v~~~~~spd~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~v 481 (915)
.+..|...|..++|||..+ ++..++.+..|.|.|+++...+. .+..+ ..+++++|.-|..+ +++.|...|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 4677899999999999887 78889999999999999965544 44455 78999999999887 8999999999999
Q ss_pred EEcCCCee-EEEecC--CCCCEEEEEeecCC----CccEEEEEeCCCeEEEEecCCC--CceeEec-CCCCcEEEEEECC
Q 002494 482 WDVVAGRK-QYTFEG--HEAPVYSVCPHHKE----SIQFIFSTAIDGKIKAWLYDYL--GSRVDYD-APGNWCTMMAYSA 551 (915)
Q Consensus 482 wd~~~~~~-~~~~~~--~~~~v~~i~~~~~~----~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~-~~~~~i~~~~~sp 551 (915)
||++..+- +..+.+ ...+|..++.-+.+ .|.+++..+.+ +..|.+.-. ..+.... ...+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986532 222221 22344433321110 12344444332 344554321 1111112 2244566777777
Q ss_pred CCCEEEEEeecCCCCceEEE----EECCCCeeEEEec-CCCCC------ceEEEEEcCCCCEEEE-EeCCCcEEEEeCCC
Q 002494 552 DGTRLFSCGTSKEGESHLVE----WNESEGAIKRTYS-GFRKR------SLGVVQFDTTRNRFLA-AGDEFQIKFWDMDN 619 (915)
Q Consensus 552 ~g~~l~~~~~~~~~~~~i~~----wd~~~~~~~~~~~-~~~~~------~v~~~~~sp~~~~l~s-~~~dg~i~iwd~~~ 619 (915)
-.++++....++....+++. -|..+|..+..-+ ++.+. .-..+.-.++.++++. ++..+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 66777665543221111111 2223343332211 11010 0111222455666665 45667899999999
Q ss_pred CceEEEEcCCCCCCCcceEEEcC-C-CCEEEEEeCCCcEEEEEcCC
Q 002494 620 MNMLTTVDADGGLPASPRLRFNK-E-GSLLAVTTSDNGIKILANSD 663 (915)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~s~~~dg~i~iwd~~~ 663 (915)
.+.+..+.... +|.++.... + +.+|++-. |..++||..++
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 99999998763 666665544 3 34555554 56688887653
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6e-07 Score=87.15 Aligned_cols=262 Identities=14% Similarity=0.171 Sum_probs=164.3
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCC--E
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL--M 422 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~--~ 422 (915)
..+.|+++.|...|. +|++|...|.|.+|.-.....-..+-+.-+.. ....+....--.-...|..+.|..++. .
T Consensus 25 ead~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQs--he~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 25 EADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQS--HELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ccceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcc--cccchhhhhhccHHHHhhheeeecCCCcce
Confidence 356799999999998 58999888999999765432100000000000 000000000011235688888887653 5
Q ss_pred EEEEECCCeEEEEEecCCC-------------------ce------e--------------eeE-EeecccCCeeEEEEe
Q 002494 423 LGVAFSKHIVHLYTYNPTG-------------------EL------R--------------QHL-EIDAHVGGVNDIAFA 462 (915)
Q Consensus 423 l~s~~~dg~i~vwd~~~~~-------------------~~------~--------------~~~-~~~~h~~~v~~~~~s 462 (915)
++..+.|.+|++|.+.... .+ . ... .-..|.--+.++.|+
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 7777889999999875420 00 0 000 113567778899999
Q ss_pred cCCCeEEEEEEeCCCcEEEEEcCCCe---eEEEecCCC-----CCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCc-
Q 002494 463 HPNKQLCIVTCGDDKMIKVWDVVAGR---KQYTFEGHE-----APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS- 533 (915)
Q Consensus 463 ~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~~~-----~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~- 533 (915)
.|.. .+++ +.|-.|.+|++.-.. .+..++.|. .-|++..|+|... ..+...+..|.|++-|++....
T Consensus 182 sD~e--t~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 182 SDKE--TLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred Cchh--eeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhhhhhhc
Confidence 8877 4554 457889999876322 233344443 3477788888743 6788888899999999984211
Q ss_pred -----ee--Ee--------cCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCC-eeEEEecCCCC---------
Q 002494 534 -----RV--DY--------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRK--------- 588 (915)
Q Consensus 534 -----~~--~~--------~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~--------- 588 (915)
.. .. ..-...|..+.|+++|+++++-. -.++++||.+.. .++.+..-|..
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~Y 332 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVY 332 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccccCCceeechHHHHHHHHHhhh
Confidence 11 11 11223688899999999998764 567999999753 46666644321
Q ss_pred --Cce---EEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 002494 589 --RSL---GVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (915)
Q Consensus 589 --~~v---~~~~~sp~~~~l~s~~~dg~i~iwd~~ 618 (915)
..| ..+.||.+.+.+++|+..+..-||-..
T Consensus 333 EnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 333 ENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred hccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 122 246788888888998887777776543
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.8e-05 Score=71.31 Aligned_cols=143 Identities=9% Similarity=0.041 Sum_probs=95.4
Q ss_pred cCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEE
Q 002494 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHL 434 (915)
Q Consensus 355 spd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~v 434 (915)
-+|.+.+++.|+..+.+.-.|..+|....+. --..+|.+-+.- -|++++.|...|.+++
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~--------------------ilg~RiE~sa~v-vgdfVV~GCy~g~lYf 77 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEA--------------------ILGVRIECSAIV-VGDFVVLGCYSGGLYF 77 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeeh--------------------hhCceeeeeeEE-ECCEEEEEEccCcEEE
Confidence 3455678899999999999999999866431 123344443333 5778999999999999
Q ss_pred EEecCCCceeeeEEeecccCCee-EEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccE
Q 002494 435 YTYNPTGELRQHLEIDAHVGGVN-DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQF 513 (915)
Q Consensus 435 wd~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 513 (915)
.+.++|.......... .|. .....+++. ++..|+.|++.+..|..+..++.+.+...+...+-++.+. + ..
T Consensus 78 l~~~tGs~~w~f~~~~----~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-~s 149 (354)
T KOG4649|consen 78 LCVKTGSQIWNFVILE----TVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-GS 149 (354)
T ss_pred EEecchhheeeeeehh----hhccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-ce
Confidence 9999997665433322 121 223456777 8999999999999999999988887644443334444443 2 23
Q ss_pred EEEEeCCCeEEEE
Q 002494 514 IFSTAIDGKIKAW 526 (915)
Q Consensus 514 l~s~~~dg~i~iw 526 (915)
|..+...|.+.--
T Consensus 150 ly~a~t~G~vlav 162 (354)
T KOG4649|consen 150 LYAAITAGAVLAV 162 (354)
T ss_pred EEEEeccceEEEE
Confidence 4455555554433
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.6e-06 Score=79.74 Aligned_cols=234 Identities=9% Similarity=-0.001 Sum_probs=147.4
Q ss_pred CCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCC
Q 002494 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (915)
Q Consensus 420 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 499 (915)
..+||.|+..|...+|...+.+.... ....|...|+-+.=.-+... -+..++.|.++++.++.-+..........-.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~--~cd~snn~v~~~~r~cd~~~-~~~i~sndht~k~~~~~~~s~~~~~h~~~~~ 160 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLY--QCDVSNNDVTLVKRYCDLKF-PLNIASNDHTGKTMVVSGDSNKFAVHNQNLT 160 (344)
T ss_pred ccEEEeccccceeeeecccCccccee--eecccccchhhhhhhccccc-ceeeccCCcceeEEEEecCcccceeeccccc
Confidence 45889999999999999987543221 22334433332211112222 3566788888888887654332222111123
Q ss_pred EEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeE---ecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCC
Q 002494 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD---YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (915)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~ 576 (915)
+.++.++++ +.++++.+....|..|.++....... .......-.+.+|+.....+|++.. |+++.+||++.
T Consensus 161 ~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q----dg~~~I~DVR~ 234 (344)
T KOG4532|consen 161 QNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ----DGTCAIYDVRN 234 (344)
T ss_pred eeeeEEcCC--CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEec----CCcEEEEEecc
Confidence 667777664 47999999999999999876554332 2223334567889999989999885 88899999986
Q ss_pred CeeEE----EecCCCCCceEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCceEEEEcCCCC------CCCcceEEEcCCC
Q 002494 577 GAIKR----TYSGFRKRSLGVVQFDTTRN--RFLAAGDEFQIKFWDMDNMNMLTTVDADGG------LPASPRLRFNKEG 644 (915)
Q Consensus 577 ~~~~~----~~~~~~~~~v~~~~~sp~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~v~~v~~s~~~ 644 (915)
..... .-+.|..+.++.+.|++.|. +|+..-.-+.+.+.|++++.....+..... ...+..-.|+.++
T Consensus 235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 235 MATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred cccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence 54322 22334444899999998664 455555567899999999876655533221 1236666777766
Q ss_pred CEEEEEeCCCcEEEEEcCC
Q 002494 645 SLLAVTTSDNGIKILANSD 663 (915)
Q Consensus 645 ~~l~s~~~dg~i~iwd~~~ 663 (915)
..+.+.+.+. +.=|++.+
T Consensus 315 ~s~~v~~e~~-~ae~ni~s 332 (344)
T KOG4532|consen 315 ESNDVKNELQ-GAEYNILS 332 (344)
T ss_pred cccccccchh-hheeeccc
Confidence 6666555433 33455443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.3e-05 Score=77.83 Aligned_cols=221 Identities=16% Similarity=0.127 Sum_probs=142.1
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEc-CCCCEEEEEECC
Q 002494 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-PDGLMLGVAFSK 429 (915)
Q Consensus 351 ~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-pd~~~l~s~~~d 429 (915)
++.|.+....++++....+.|..|+..+++... + .......+++. +++ .|+.+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~------~----------------~~~~~~G~~~~~~~g-~l~v~~~~ 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV------I----------------DLPGPNGMAFDRPDG-RLYVADSG 60 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE------E----------------ESSSEEEEEEECTTS-EEEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE------E----------------ecCCCceEEEEccCC-EEEEEEcC
Confidence 678898444578877788999999999876432 1 11126677787 564 55555554
Q ss_pred CeEEEEEecCCCceeeeEEee--c-ccCCeeEEEEecCCCeEEEEEEeCC--------CcEEEEEcCCCeeEEEecCCCC
Q 002494 430 HIVHLYTYNPTGELRQHLEID--A-HVGGVNDIAFAHPNKQLCIVTCGDD--------KMIKVWDVVAGRKQYTFEGHEA 498 (915)
Q Consensus 430 g~i~vwd~~~~~~~~~~~~~~--~-h~~~v~~~~~s~~~~~~~l~s~~~d--------~~i~vwd~~~~~~~~~~~~~~~ 498 (915)
+ +.++|..+++. ....... . .....+++++.|+|. +.++.... |.+..++.. ++...... .-.
T Consensus 61 ~-~~~~d~~~g~~-~~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~ 134 (246)
T PF08450_consen 61 G-IAVVDPDTGKV-TVLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLG 134 (246)
T ss_dssp C-EEEEETTTTEE-EEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EES
T ss_pred c-eEEEecCCCcE-EEEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Ccc
Confidence 4 45558888643 2222332 1 345788999999998 56665433 457777765 55433333 345
Q ss_pred CEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCc-e---e-EecCCC--CcEEEEEECCCCCEEEEEeecCCCCceEEE
Q 002494 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-R---V-DYDAPG--NWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (915)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~---~-~~~~~~--~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~ 571 (915)
..+.++|+|++. .++++-+..+.|..++++.... . . ...... ...-.+++..+|+..++.. +.+.|.+
T Consensus 135 ~pNGi~~s~dg~-~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~----~~~~I~~ 209 (246)
T PF08450_consen 135 FPNGIAFSPDGK-TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW----GGGRIVV 209 (246)
T ss_dssp SEEEEEEETTSS-EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE----TTTEEEE
T ss_pred cccceEECCcch-heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc----CCCEEEE
Confidence 678999998642 3445677788999999875443 1 1 122222 3478899999998766554 3677999
Q ss_pred EECCCCeeEEEecCCCCCceEEEEE-cCCCCEEEEEe
Q 002494 572 WNESEGAIKRTYSGFRKRSLGVVQF-DTTRNRFLAAG 607 (915)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~s~~ 607 (915)
+|.. |+.+..+..... .+++++| .++.+.|+..+
T Consensus 210 ~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 210 FDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEE
T ss_pred ECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEe
Confidence 9988 888888877644 7889999 46766666543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.4e-07 Score=92.03 Aligned_cols=254 Identities=12% Similarity=0.045 Sum_probs=175.0
Q ss_pred CccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeC-CCcEEEEEcC
Q 002494 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVV 485 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~-d~~i~vwd~~ 485 (915)
|...|+.+.-+ -.+++.+++.||.++.|.-..-.-+.-...+..|...|.+++.+-++- ++.|.+. |..++++|+.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence 77777776544 467999999999999998654222222234567888999999999988 7888777 9999999988
Q ss_pred CCeeEEEec--CCCCCEEEEEeecC-CCc--cEEEEEeCCCeEEEEecCCCCcee--EecCCCCcEEEEEECCCCCEEEE
Q 002494 486 AGRKQYTFE--GHEAPVYSVCPHHK-ESI--QFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFS 558 (915)
Q Consensus 486 ~~~~~~~~~--~~~~~v~~i~~~~~-~~~--~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~~ 558 (915)
+-..+.-++ .-.+.+ +|... ++. ..-++.-.++.+.++|-....+.. .-..|..+|..+.+++-+..+++
T Consensus 85 n~DminmiKL~~lPg~a---~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFA---EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred ccchhhhcccccCCCce---EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence 765443332 122222 22222 111 223344457889999976655433 33457889999999999988877
Q ss_pred EeecCCCCceEEEEECCC------CeeEEEec---------CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE
Q 002494 559 CGTSKEGESHLVEWNESE------GAIKRTYS---------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (915)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~------~~~~~~~~---------~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 623 (915)
.. ..|.|.-|.... .+....++ .... ...++.|+|+|..+.+-+.|.+|++++.++|+.+
T Consensus 162 iD----~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt-~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 162 ID----ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKT-EPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cc----ccceeEeecCCCcccCccccccccccccchhhccccccc-CccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 64 367799998762 11111111 1122 5678999999999999999999999999998766
Q ss_pred EEEcCC-------------------------------CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeecc
Q 002494 624 TTVDAD-------------------------------GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (915)
Q Consensus 624 ~~~~~~-------------------------------~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 672 (915)
+.+... .+...-+.+.|...|++|+.++-=| |++.++.++ ++.+.+.
T Consensus 237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn-~v~ri~g 314 (558)
T KOG0882|consen 237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN-TVVRILG 314 (558)
T ss_pred hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC-eEEEEec
Confidence 554310 0111235678899999999998766 999999998 7777764
Q ss_pred C
Q 002494 673 G 673 (915)
Q Consensus 673 ~ 673 (915)
.
T Consensus 315 k 315 (558)
T KOG0882|consen 315 K 315 (558)
T ss_pred c
Confidence 3
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-07 Score=92.50 Aligned_cols=164 Identities=15% Similarity=0.104 Sum_probs=111.8
Q ss_pred CEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEE-
Q 002494 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA- 426 (915)
Q Consensus 348 ~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~- 426 (915)
.+..+..+|+++ ++|++..+....++++..... ..+.++.. .-...-+++.|..+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~------------~v~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS------------CVPKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe------------ecccCcceeeeeeccceEEEEe
Confidence 455566777776 778887777777777665443 11122111 112223344454555544444
Q ss_pred --ECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEe-cCCCCCEEEE
Q 002494 427 --FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYSV 503 (915)
Q Consensus 427 --~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~i 503 (915)
+....+.+|....+... .+-||-..+++++|+||++ +++++..|..|+|-.....-.+..| -||...|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44455666665543222 3558999999999999998 8999999999999877665555554 3699999999
Q ss_pred EeecCCCccEEEEEeCCCeEEEEecCCCCceeEe
Q 002494 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (915)
Q Consensus 504 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 537 (915)
+..++ ..|+++|.|+++++||+.+++.+..+
T Consensus 201 sl~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 201 SLTDN---YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eeccC---ceeeecCCCCcEEEEecccCCccccc
Confidence 98754 46999999999999999998877543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.7e-05 Score=79.70 Aligned_cols=220 Identities=15% Similarity=0.109 Sum_probs=137.6
Q ss_pred CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecC
Q 002494 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508 (915)
Q Consensus 429 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~ 508 (915)
+|.|..||..+|+.+... .+..-.....+. ..+++. .+++++.++.+..||..+|+.+..+.. ...+......
T Consensus 2 ~g~l~~~d~~tG~~~W~~-~~~~~~~~~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-- 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSY-DLGPGIGGPVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-- 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEE-ECSSSCSSEEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--
T ss_pred CCEEEEEECCCCCEEEEE-ECCCCCCCccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--
Confidence 688999999888766543 221111122211 233455 477778999999999999998887764 2222111111
Q ss_pred CCccEEEEEeCCCeEEEEecCCCCceeEe-cCCC---CcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEec
Q 002494 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPG---NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (915)
Q Consensus 509 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~---~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (915)
.+..++.++.++.+..+|..+++..... .... ..........++..++++.. ++.++.+|.++|+.+..+.
T Consensus 75 -~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 75 -DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp -ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEE
T ss_pred -cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEee
Confidence 2246777778889999999988887763 3221 11122222233777777653 6779999999999988887
Q ss_pred CCCCC---c------eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 002494 585 GFRKR---S------LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (915)
Q Consensus 585 ~~~~~---~------v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~ 655 (915)
..... . +..-....++ .++.++.++.+.-+|+.+++.+.... .. .+.. ....++..+++++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTTE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCCE
Confidence 64421 1 1122222244 77777777764444999998775443 22 2222 13467888888889999
Q ss_pred EEEEEcCCCce
Q 002494 656 IKILANSDGVR 666 (915)
Q Consensus 656 i~iwd~~~~~~ 666 (915)
|..||+.+|+.
T Consensus 224 l~~~d~~tG~~ 234 (238)
T PF13360_consen 224 LYALDLKTGKV 234 (238)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCCE
Confidence 99999999943
|
... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.2e-05 Score=73.67 Aligned_cols=237 Identities=9% Similarity=0.118 Sum_probs=133.0
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEecCCC--ceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEE
Q 002494 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (915)
Q Consensus 414 ~~~spd~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 491 (915)
++.+.||+.||..- |..|.|-..+..- .+.+....+.....-..++||||+. +||.+...|+|+++|+.. ..+.
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t--lLa~a~S~G~i~vfdl~g-~~lf 78 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT--LLAYAESTGTIRVFDLMG-SELF 78 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc--EEEEEcCCCeEEEEeccc-ceeE
Confidence 56778998888764 4556555443321 1121111122233467899999999 899999999999999764 3344
Q ss_pred EecC-------CCCCEEEEEeecCCC----ccEEEEEeCCCeEEEEecCCC-----CceeEecC---CCCcEEEEEECCC
Q 002494 492 TFEG-------HEAPVYSVCPHHKES----IQFIFSTAIDGKIKAWLYDYL-----GSRVDYDA---PGNWCTMMAYSAD 552 (915)
Q Consensus 492 ~~~~-------~~~~v~~i~~~~~~~----~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~---~~~~i~~~~~sp~ 552 (915)
.+.. -...|..+.|..... ...|++-..+|.++-|-+..+ .....+.. ....|.++.++|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 4432 124455565543221 125677778888877765321 12222222 3558999999999
Q ss_pred CCEEEEEeecCCCCc-------eEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 002494 553 GTRLFSCGTSKEGES-------HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (915)
Q Consensus 553 g~~l~~~~~~~~~~~-------~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 625 (915)
.+.|++++.....++ -+..|.+-++.+-.. ...+-+...-.... +..+|.+-+.+....
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk-----------~v~~~~~~~~~~~~---~~~~~~~~~~~~fs~ 224 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK-----------QVTSSEDDITASSK---RRGLLRIPSFKFFSR 224 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE-----------EccccCcccccccc---ccceeeccceeeeec
Confidence 999888875333221 122232222211111 00011111111111 122333333222211
Q ss_pred EcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 002494 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (915)
Q Consensus 626 ~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 671 (915)
.. .....|..|..||||+.||+...+|.|.+|++.+- .+.+..
T Consensus 225 -~~-~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL-~~~~~W 267 (282)
T PF15492_consen 225 -QG-QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL-RLQRSW 267 (282)
T ss_pred -cc-cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc-hhhccc
Confidence 11 12347899999999999999999999999999876 444443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3e-05 Score=85.79 Aligned_cols=259 Identities=12% Similarity=0.067 Sum_probs=153.9
Q ss_pred EEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEE-EEEcCCCCEEEEEECCCeEEEEEecCC
Q 002494 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR-CVWGPDGLMLGVAFSKHIVHLYTYNPT 440 (915)
Q Consensus 362 l~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~spd~~~l~s~~~dg~i~vwd~~~~ 440 (915)
++.++.+|.+.-+|.++|+.+-+... .+.+.+ ... .+..++.++.++.+.-+|.++|
T Consensus 123 v~v~~~~g~l~ald~~tG~~~W~~~~--------------------~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG 180 (394)
T PRK11138 123 VYIGSEKGQVYALNAEDGEVAWQTKV--------------------AGEALSRPVV--SDGLVLVHTSNGMLQALNESDG 180 (394)
T ss_pred EEEEcCCCEEEEEECCCCCCcccccC--------------------CCceecCCEE--ECCEEEEECCCCEEEEEEccCC
Confidence 55677899999999999987643211 011111 011 2446667778899999999998
Q ss_pred CceeeeEEeeccc---CCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCC-------CEEEEEeecCCC
Q 002494 441 GELRQHLEIDAHV---GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-------PVYSVCPHHKES 510 (915)
Q Consensus 441 ~~~~~~~~~~~h~---~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-------~v~~i~~~~~~~ 510 (915)
+.+..... .... ......... +. .++.++.++.+..+|..+|+.+........ ....+..+|--.
T Consensus 181 ~~~W~~~~-~~~~~~~~~~~sP~v~--~~--~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~ 255 (394)
T PRK11138 181 AVKWTVNL-DVPSLTLRGESAPATA--FG--GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV 255 (394)
T ss_pred CEeeeecC-CCCcccccCCCCCEEE--CC--EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE
Confidence 76543211 0000 000111121 22 356677889999999999887655431110 011111112112
Q ss_pred ccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCc
Q 002494 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS 590 (915)
Q Consensus 511 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (915)
+..++.++.+|.+..+|..+++......... ...+. ..+..++.++. ++.++.+|..+|+.+..........
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~--~~~~~vy~~~~----~g~l~ald~~tG~~~W~~~~~~~~~ 327 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS--VNDFA--VDGGRIYLVDQ----NDRVYALDTRGGVELWSQSDLLHRL 327 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCC--ccCcE--EECCEEEEEcC----CCeEEEEECCCCcEEEcccccCCCc
Confidence 2467778889999999998887655443211 11122 23455665553 6779999999998766543221111
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcc-eEEEcCCCCEEEEEeCCCcEEEEEc
Q 002494 591 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP-RLRFNKEGSLLAVTTSDNGIKILAN 661 (915)
Q Consensus 591 v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~s~~~dg~i~iwd~ 661 (915)
..+... .+..++.++.||.+++.|..+|+.+........ .+. +..+ .+..|++++.||.+..++.
T Consensus 328 ~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~--~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 328 LTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS--GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC--cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 222222 256788899999999999999999888765322 121 2222 3557888999999988764
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-07 Score=92.42 Aligned_cols=165 Identities=12% Similarity=0.171 Sum_probs=122.1
Q ss_pred eEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCC----C
Q 002494 457 NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL----G 532 (915)
Q Consensus 457 ~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~ 532 (915)
+.++|+-+-.. +-++.+.+..+-+-|+.+|-. +.|. ..+.|.++.|+... ++++.|..+|.|..+|++.. .
T Consensus 215 ~~CawSlni~g-yhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~ 289 (425)
T KOG2695|consen 215 WSCAWSLNIMG-YHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNG 289 (425)
T ss_pred hhhhhhhccce-eeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCC
Confidence 34467644333 235566677888999888743 3443 56778888887643 69999999999999999876 2
Q ss_pred ceeEecCCCCcEEEEEECC-CCCEEEEEeecCCCCceEEEEECCCCee---EEEecCCCCC-ceEEEEEcCCCCEEEEEe
Q 002494 533 SRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKR-SLGVVQFDTTRNRFLAAG 607 (915)
Q Consensus 533 ~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~-~v~~~~~sp~~~~l~s~~ 607 (915)
.....-.|+..|+++..-. ++.+|++.+ .++.|.+||.+.-++ +.++.||.+. ...-+-..+....++++|
T Consensus 290 ~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~----M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G 365 (425)
T KOG2695|consen 290 WCAQRLYHDSSVTSLQILQFSQQKLMASD----MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG 365 (425)
T ss_pred cceEEEEcCcchhhhhhhccccceEeecc----CcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc
Confidence 3333344777888887766 677777765 488899999987766 9999999763 122244567778899999
Q ss_pred CCCcEEEEeCCCCceEEEEcCCC
Q 002494 608 DEFQIKFWDMDNMNMLTTVDADG 630 (915)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~ 630 (915)
+|...+||.++.+.++.+++...
T Consensus 366 dDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 366 DDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred CeeEEEEEecccCceeeccCCCC
Confidence 99999999999999999987654
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-06 Score=89.21 Aligned_cols=259 Identities=12% Similarity=0.098 Sum_probs=173.0
Q ss_pred EecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCC
Q 002494 342 TLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (915)
Q Consensus 342 ~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 421 (915)
.+.|.+.|+.+.-+... ++.+++.||.++.|.-..-..+. -...+..|-+.|.+++.+-+|.
T Consensus 5 symhrd~i~hv~~tka~--fiiqASlDGh~KFWkKs~isGvE----------------fVKhFraHL~~I~sl~~S~dg~ 66 (558)
T KOG0882|consen 5 SYMHRDVITHVFPTKAK--FIIQASLDGHKKFWKKSRISGVE----------------FVKHFRAHLGVILSLAVSYDGW 66 (558)
T ss_pred hhcccceeeeEeeehhh--eEEeeecchhhhhcCCCCcccee----------------ehhhhHHHHHHHHhhhccccce
Confidence 34577788877766543 67899999999999755411110 0112456888999999999999
Q ss_pred EEEEEEC-CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeE-EEEEEeCCCcEEEEEcCCCe-e-EEEecCCC
Q 002494 422 MLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL-CIVTCGDDKMIKVWDVVAGR-K-QYTFEGHE 497 (915)
Q Consensus 422 ~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~-~l~s~~~d~~i~vwd~~~~~-~-~~~~~~~~ 497 (915)
.+.+.+. |..++++|+++-..+.-. .+..-.+.+. +..++..... +-++.-.++.+.++|-.... . ...-.-|.
T Consensus 67 L~~Sv~d~Dhs~KvfDvEn~Dminmi-KL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~ 144 (558)
T KOG0882|consen 67 LFRSVEDPDHSVKVFDVENFDMINMI-KLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHF 144 (558)
T ss_pred eEeeccCcccceeEEEeeccchhhhc-ccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccccc
Confidence 9999777 999999999875443211 1222222222 2223322211 23334567899999966443 2 22334599
Q ss_pred CCEEEEEeecCCCccEEEEEeCCCeEEEEecCC-CCce-----e---------EecCCCCcEEEEEECCCCCEEEEEeec
Q 002494 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSR-----V---------DYDAPGNWCTMMAYSADGTRLFSCGTS 562 (915)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~-----~---------~~~~~~~~i~~~~~sp~g~~l~~~~~~ 562 (915)
.+|..+.+.+.. ..+++....|.|.-|.... .+.+ . .+........++.|+|+|..+.+.+.
T Consensus 145 sPV~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~- 221 (558)
T KOG0882|consen 145 SPVKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP- 221 (558)
T ss_pred CceEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc-
Confidence 999999998866 5788998899999998762 1111 1 11122346789999999999987763
Q ss_pred CCCCceEEEEECCCCeeEEEecC--------------------------------CCCCceEEEEEcCCCCEEEEEeCCC
Q 002494 563 KEGESHLVEWNESEGAIKRTYSG--------------------------------FRKRSLGVVQFDTTRNRFLAAGDEF 610 (915)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~--------------------------------~~~~~v~~~~~sp~~~~l~s~~~dg 610 (915)
|..|++++.++|+.++.+.. +....-..+.|...|++|+-++-=|
T Consensus 222 ---DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g 298 (558)
T KOG0882|consen 222 ---DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG 298 (558)
T ss_pred ---ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee
Confidence 78899999999876554321 1111234467888899999888765
Q ss_pred cEEEEeCCCCceEEEEc
Q 002494 611 QIKFWDMDNMNMLTTVD 627 (915)
Q Consensus 611 ~i~iwd~~~~~~~~~~~ 627 (915)
|++.++.+++.++.+.
T Consensus 299 -ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 299 -IKVINLDTNTVVRILG 314 (558)
T ss_pred -EEEEEeecCeEEEEec
Confidence 8899998887777663
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.9e-05 Score=83.23 Aligned_cols=265 Identities=14% Similarity=0.199 Sum_probs=147.6
Q ss_pred cCCCCeEEEEE--------eCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEE
Q 002494 355 HPQQQTILLVG--------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (915)
Q Consensus 355 spd~~~ll~~g--------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~ 426 (915)
|||++++|+.. +..+.+.|||+.+++.... ......+....|||+|+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l--------------------~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL--------------------TPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES--------------------S-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC--------------------cCCccccccceeecCCCeeEEE
Confidence 67888665532 2346789999998765431 2225678889999999999998
Q ss_pred ECCCeEEEEEecCCCceeeeEEeec-------c---------cCCeeEEEEecCCCeEEEEEE-eCCCcEE---------
Q 002494 427 FSKHIVHLYTYNPTGELRQHLEIDA-------H---------VGGVNDIAFAHPNKQLCIVTC-GDDKMIK--------- 480 (915)
Q Consensus 427 ~~dg~i~vwd~~~~~~~~~~~~~~~-------h---------~~~v~~~~~s~~~~~~~l~s~-~~d~~i~--------- 480 (915)
. ++.|.+++..++...+. +..+ - -+.-..+.||||+++ |+.. -.+..|.
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEEESS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeeccCC
Confidence 6 47899998877633321 1112 0 122357889999996 3332 2222222
Q ss_pred --------------------------EEEcCCCeeEE-E-e---cCCCCCEEEEEeecCCCccEEEE--EeCCC---eEE
Q 002494 481 --------------------------VWDVVAGRKQY-T-F---EGHEAPVYSVCPHHKESIQFIFS--TAIDG---KIK 524 (915)
Q Consensus 481 --------------------------vwd~~~~~~~~-~-~---~~~~~~v~~i~~~~~~~~~~l~s--~~~dg---~i~ 524 (915)
|+|+.+++... . . ......+..+.|.+++ ..++. ...+. .+.
T Consensus 136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~--~~l~~~~~nR~q~~~~l~ 213 (353)
T PF00930_consen 136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG--KRLWVQWLNRDQNRLDLV 213 (353)
T ss_dssp STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT--EEEEEEEEETTSTEEEEE
T ss_pred ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC--cEEEEEEcccCCCEEEEE
Confidence 33433333211 0 0 1123345566676653 32322 23322 255
Q ss_pred EEecCCCCceeEec-CCCCc---EEEEEEC-CCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCce-EEEEEcC
Q 002494 525 AWLYDYLGSRVDYD-APGNW---CTMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-GVVQFDT 598 (915)
Q Consensus 525 iwd~~~~~~~~~~~-~~~~~---i~~~~~s-p~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-~~~~~sp 598 (915)
++|..++....... ..... .....+. +++..++..+. ++|-..|++++...+... .+....- .| ..+.+++
T Consensus 214 ~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~~-~V~~i~~~d~ 290 (353)
T PF00930_consen 214 LCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPR-QLTSGDW-EVTSILGWDE 290 (353)
T ss_dssp EEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEE-ESS-SSS--EEEEEEEEC
T ss_pred EEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEccccccee-ccccCce-eecccceEcC
Confidence 66776655443322 12222 2244554 88888877775 677888999998877644 4443333 45 4578888
Q ss_pred CCCEEEE-EeC----CCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEe
Q 002494 599 TRNRFLA-AGD----EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (915)
Q Consensus 599 ~~~~l~s-~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 651 (915)
+++.++. +.. ...|+.-++..+..+..+...... -..+.|||+|++++...
T Consensus 291 ~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 291 DNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEE
T ss_pred CCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEE
Confidence 8877665 443 235666666633444555444321 14899999999887654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-05 Score=81.11 Aligned_cols=222 Identities=12% Similarity=0.066 Sum_probs=136.1
Q ss_pred CCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeE
Q 002494 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447 (915)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 447 (915)
+|+|..||..+|+.+.. .. +........+. ..+++..+++++.++.+..||..+|+.+...
T Consensus 2 ~g~l~~~d~~tG~~~W~-------~~----------~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~- 62 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWS-------YD----------LGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRF- 62 (238)
T ss_dssp TSEEEEEETTTTEEEEE-------EE----------CSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEE-
T ss_pred CCEEEEEECCCCCEEEE-------EE----------CCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEe-
Confidence 68899999999986643 21 11101112211 3336777888889999999999998765432
Q ss_pred EeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEe-cCCCC---CEEEEEeecCCCccEEEEEeCCCeE
Q 002494 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEA---PVYSVCPHHKESIQFIFSTAIDGKI 523 (915)
Q Consensus 448 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~---~v~~i~~~~~~~~~~l~s~~~dg~i 523 (915)
.. ...+...... .+. .++.++.++.++.+|..+|+.+... ..... .......... +..++.+..++.|
T Consensus 63 --~~-~~~~~~~~~~-~~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l 134 (238)
T PF13360_consen 63 --DL-PGPISGAPVV-DGG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL 134 (238)
T ss_dssp --EC-SSCGGSGEEE-ETT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred --ec-cccccceeee-ccc--ccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence 21 2222111222 334 3566668889999999999998874 32211 1111122222 3578888889999
Q ss_pred EEEecCCCCceeEecCCCCc----------EEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEE
Q 002494 524 KAWLYDYLGSRVDYDAPGNW----------CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV 593 (915)
Q Consensus 524 ~iwd~~~~~~~~~~~~~~~~----------i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 593 (915)
..+|.++++........... +..-....++ .++.+.. ++.+..+|..+++.+.... .. .+..
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~----~g~~~~~d~~tg~~~w~~~-~~--~~~~ 206 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSG----DGRVVAVDLATGEKLWSKP-IS--GIYS 206 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECC----TSSEEEEETTTTEEEEEEC-SS---ECE
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcC----CCeEEEEECCCCCEEEEec-CC--CccC
Confidence 99999998887766553321 1222223345 5555543 4434444999998765433 22 2222
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 002494 594 VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (915)
Q Consensus 594 ~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 625 (915)
. ....+..+++++.++.|..||+++|+.+..
T Consensus 207 ~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 207 L-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp C-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred C-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 1 346778888888999999999999988754
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.3e-05 Score=90.45 Aligned_cols=278 Identities=12% Similarity=0.184 Sum_probs=159.3
Q ss_pred CCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEE
Q 002494 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (915)
Q Consensus 346 ~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s 425 (915)
.+.|.++.|..++.. ++.+...|.|.+-|.++..... ...-.+.|.+++||||+..++.
T Consensus 68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEE
Confidence 458999999999975 5667889999999888765432 2446778999999999999999
Q ss_pred EECCCeEEEEEecCCCceeeeEEeec---ccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCee-EEEecCCCCCEE
Q 002494 426 AFSKHIVHLYTYNPTGELRQHLEIDA---HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVY 501 (915)
Q Consensus 426 ~~~dg~i~vwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~ 501 (915)
.+..+++.+-.-. -..+... .+.. ..+....+-|-....+ +-|+ .|...-.+...... .....-+ +.=+
T Consensus 127 iT~~~tll~mT~~-f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~~~-~~~~ 199 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKD-FEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIEQD-DHKT 199 (1265)
T ss_pred EeCCcEEEEEecc-ccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchhhc-cCCc
Confidence 9988888765421 1111100 1100 1122333444333332 1121 12111111111000 0001111 2223
Q ss_pred EEEeecCCCccEEEEEe----CC-CeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCC
Q 002494 502 SVCPHHKESIQFIFSTA----ID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (915)
Q Consensus 502 ~i~~~~~~~~~~l~s~~----~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~ 576 (915)
+|+| .++|+++++.. .+ +.|++||-+ +.....-....+.-.+++|-|.|..+++.....+ +..|.++...
T Consensus 200 ~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN- 274 (1265)
T KOG1920|consen 200 SISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN- 274 (1265)
T ss_pred eEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC-
Confidence 4666 45778888743 23 789999866 2222222223334568999999999998776554 5578888743
Q ss_pred CeeEE----EecCCCCCceEEEEEcCCCCEEEE---EeCCCcEEEEeCCCCceE--EEEcCCCCCCCcceEEEcC-CCCE
Q 002494 577 GAIKR----TYSGFRKRSLGVVQFDTTRNRFLA---AGDEFQIKFWDMDNMNML--TTVDADGGLPASPRLRFNK-EGSL 646 (915)
Q Consensus 577 ~~~~~----~~~~~~~~~v~~~~~sp~~~~l~s---~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~-~~~~ 646 (915)
|-.-. .+..... .+..++|+.++..|++ ......|++|-+.+..-- ..+..... . -+.|+| ....
T Consensus 275 GL~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~--~--~~~W~p~~~~~ 349 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK--A--LLMWDPVTEKT 349 (1265)
T ss_pred CccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc--c--cccccCCCcee
Confidence 43222 2222232 4889999999998887 445556999999875422 22222221 1 277888 2333
Q ss_pred EEEEeCCCcEEEEEc
Q 002494 647 LAVTTSDNGIKILAN 661 (915)
Q Consensus 647 l~s~~~dg~i~iwd~ 661 (915)
+.+-..+|...++++
T Consensus 350 L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 350 LHVLRESGQRLVRDF 364 (1265)
T ss_pred EEEEecCCcEEEEEE
Confidence 444445666655554
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00011 Score=74.28 Aligned_cols=231 Identities=13% Similarity=0.087 Sum_probs=145.9
Q ss_pred eEEEEEcC-CCCEEEEEECCCe-EEEEEecCCCceeeeEEeecccC--CeeEEEEecCCCeEEEEEEe-----CCCcEEE
Q 002494 411 VNRCVWGP-DGLMLGVAFSKHI-VHLYTYNPTGELRQHLEIDAHVG--GVNDIAFAHPNKQLCIVTCG-----DDKMIKV 481 (915)
Q Consensus 411 v~~~~~sp-d~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~~~l~s~~-----~d~~i~v 481 (915)
...++.+| ++..++.+-.-|+ ..+||..+++..... ....+ -.-...||+||+ +|++.- ..|.|-|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~---~a~~gRHFyGHg~fs~dG~--~LytTEnd~~~g~G~IgV 81 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL---WAPPGRHFYGHGVFSPDGR--LLYTTENDYETGRGVIGV 81 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE---cCCCCCEEecCEEEcCCCC--EEEEeccccCCCcEEEEE
Confidence 34578888 5566677776664 778999988765422 11111 112358999999 676653 3578999
Q ss_pred EEcC-CCeeEEEecCCCCCEEEEEeecCCCccEEEEEe------------------CCCeEEEEecCCCCceeE--e--c
Q 002494 482 WDVV-AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA------------------IDGKIKAWLYDYLGSRVD--Y--D 538 (915)
Q Consensus 482 wd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~------------------~dg~i~iwd~~~~~~~~~--~--~ 538 (915)
||.. +-+.+..+..|.-.-..+.+.|++ ..|+.+- .+-.+...|..++..+.. + .
T Consensus 82 yd~~~~~~ri~E~~s~GIGPHel~l~pDG--~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~ 159 (305)
T PF07433_consen 82 YDAARGYRRIGEFPSHGIGPHELLLMPDG--ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD 159 (305)
T ss_pred EECcCCcEEEeEecCCCcChhhEEEcCCC--CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence 9998 567777888777666777777754 4454431 122344445555554443 2 2
Q ss_pred CCCCcEEEEEECCCCCEEEEEeecCC---CCceEEEEECCCCeeEEEecCCC------CCceEEEEEcCCCCEEEEEe-C
Q 002494 539 APGNWCTMMAYSADGTRLFSCGTSKE---GESHLVEWNESEGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAAG-D 608 (915)
Q Consensus 539 ~~~~~i~~~~~sp~g~~l~~~~~~~~---~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~s~~-~ 608 (915)
.+...+..+++.++|..++..-..++ ....+.+++. ++.+..+.... ...+-++++++++.++++++ .
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr 237 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR 237 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence 24558999999999976665543222 1123444443 33233333211 12788999999999887766 6
Q ss_pred CCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 002494 609 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (915)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i 656 (915)
.|.+.+||..+++.+...... .+..++-.+++ ++++.+. |.+
T Consensus 238 Gg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG~-G~~ 279 (305)
T PF07433_consen 238 GGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSGQ-GQL 279 (305)
T ss_pred CCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEeCCC-ccE
Confidence 778999999999998877654 45667777766 5555443 543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00012 Score=76.32 Aligned_cols=227 Identities=11% Similarity=0.073 Sum_probs=112.5
Q ss_pred EEEcCCCCEEEEEEC---CCeEEEEEecCCCceeeeEEeeccc-CCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCee
Q 002494 414 CVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489 (915)
Q Consensus 414 ~~~spd~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~ 489 (915)
=+|.+||+.|+.++. ...+.+.|+.+++.. .+.... .......++|+++. ++-......++-.|+.+.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~----QLTdg~g~~~~g~~~s~~~~~--~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEIT----QLTDGPGDNTFGGFLSPDDRA--LYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE----E---SS-B-TTT-EE-TTSSE--EEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEE----ECccCCCCCccceEEecCCCe--EEEEECCCeEEEEECCcCcE
Confidence 368899988887765 456777888885433 233222 22335677888884 44344557899999999876
Q ss_pred EEEecCCCCCEEEEEeecCCCccEEEEEeC----------------------CCeEEEEecCCCCceeEecCCCCcEEEE
Q 002494 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAI----------------------DGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (915)
Q Consensus 490 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 547 (915)
...+......+-...|..+.++..++-.-. ...|...|+.+++....+. ....+..+
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~ 193 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV 193 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence 666665666665566765556655543211 1234444666554433333 45577888
Q ss_pred EECCCCC-EEEEEeecCCCC---ceEEEEECCCCeeEEEecCCC-CCceEEEEEcCCCCEEEEEe-----CCCcEEEEeC
Q 002494 548 AYSADGT-RLFSCGTSKEGE---SHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAG-----DEFQIKFWDM 617 (915)
Q Consensus 548 ~~sp~g~-~l~~~~~~~~~~---~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~-----~dg~i~iwd~ 617 (915)
.|||... .|+.|-. +..+ ..|.+.+.. |...+.+..+. ...+..=-|.|||..+.--+ .+..|.-+|+
T Consensus 194 ~fsP~dp~li~fCHE-Gpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHE-GPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEETTEEEEEEEEE--S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred ccCCCCCCEEEEecc-CCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 9999654 4455543 3222 245444543 33334333332 22455567999998776533 2446777888
Q ss_pred CCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCC
Q 002494 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (915)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 653 (915)
.+++........ .....--++||++++-=+.|
T Consensus 272 ~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 887655433332 34466678899988765554
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.4e-07 Score=90.35 Aligned_cols=163 Identities=13% Similarity=0.077 Sum_probs=119.4
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeE
Q 002494 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432 (915)
Q Consensus 353 ~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i 432 (915)
+||-+-.-+-++.+.+-.|-+-|+++|.... +. ..+.|.++.|...++.+..|..+|.|
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRngeI 276 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGEI 276 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCcE
Confidence 5653322122334457788999999885432 22 56789999999999999999999999
Q ss_pred EEEEecCCCc--eeeeEEeecccCCeeEEEEec-CCCeEEEEEEeCCCcEEEEEcCCCee---EEEecCCCCCEEEEEee
Q 002494 433 HLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYSVCPH 506 (915)
Q Consensus 433 ~vwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~-~~~~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~i~~~ 506 (915)
..+|+..... ......+ .|...|+++..-. +++ +|++.+.+|.|++||++.-++ +.++++|-..-.-+-++
T Consensus 277 ~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~ 353 (425)
T KOG2695|consen 277 FVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH 353 (425)
T ss_pred EEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccc
Confidence 9999987521 1111122 5889999998877 444 788999999999999997766 88888887655555444
Q ss_pred cCCCccEEEEEeCCCeEEEEecCCCCceeEecC
Q 002494 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539 (915)
Q Consensus 507 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 539 (915)
-++....++++++|...|||.++.+.....+..
T Consensus 354 v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 354 VKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred cccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 444556899999999999999998776665543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00068 Score=70.93 Aligned_cols=298 Identities=13% Similarity=0.107 Sum_probs=148.6
Q ss_pred CCCcccEEEEecCCCCEEE------EEEcCCCCeEEEEEeCCC--cEEEEEcCCCceecccceeeeecccCccccccccc
Q 002494 333 DDLTKTVVRTLNQGSNVMS------MDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (915)
Q Consensus 333 d~~~~~~~~~l~h~~~V~~------v~fspd~~~ll~~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (915)
|..+|..+..|.+...... =+|.+||+++|+++..+| .+.+.|+.+++..+-
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QL-------------------- 75 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQL-------------------- 75 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------------------
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEEC--------------------
Confidence 4456666666664333222 367889998888877666 467778888876542
Q ss_pred CCCc-cCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEe--cCCCeEEEEEEe---C---
Q 002494 405 NDAA-ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA--HPNKQLCIVTCG---D--- 475 (915)
Q Consensus 405 ~~~~-~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s--~~~~~~~l~s~~---~--- 475 (915)
.... .......++|+++.++.......++-.|+++.+.. . .+......+-...|. .|+. .++..- .
T Consensus 76 Tdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~-~--vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~ 150 (386)
T PF14583_consen 76 TDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER-V--VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWK 150 (386)
T ss_dssp --SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE-E--EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG--
T ss_pred ccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEE-E--EEECCcccccccceeeCCCcc--EEEEEEEeehhcc
Confidence 2221 11224567898898887767778888899886542 2 333344445445554 3454 232211 1
Q ss_pred ----------------CCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeC---CCe-EEEEecCCCCcee
Q 002494 476 ----------------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGK-IKAWLYDYLGSRV 535 (915)
Q Consensus 476 ----------------d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~-i~iwd~~~~~~~~ 535 (915)
.+.|...|+.+|+....+. ....+.-+.++|.. ..+|+.|-. +.. -|||-+++.+...
T Consensus 151 ~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d-p~li~fCHEGpw~~Vd~RiW~i~~dg~~~ 228 (386)
T PF14583_consen 151 PLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD-PTLIMFCHEGPWDLVDQRIWTINTDGSNV 228 (386)
T ss_dssp ---SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE-EEEEEEEE-S-TTTSS-SEEEEETTS---
T ss_pred CccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC-CCEEEEeccCCcceeceEEEEEEcCCCcc
Confidence 1335566777777554444 45567778888874 356666543 322 3667665443222
Q ss_pred -Eec--CCCCcEEEEEECCCCCEEEEEee-cCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC--
Q 002494 536 -DYD--APGNWCTMMAYSADGTRLFSCGT-SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-- 609 (915)
Q Consensus 536 -~~~--~~~~~i~~~~~sp~g~~l~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-- 609 (915)
.+. .....+..=-|.|||..|..-+. .+..+..|.-+|..+++........ ....+-.++||++++-=+.|
T Consensus 229 ~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p 305 (386)
T PF14583_consen 229 KKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAP 305 (386)
T ss_dssp EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE----
T ss_pred eeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCC
Confidence 111 22335666679999998876444 3333667888899888664433321 23345567899877652222
Q ss_pred --------------CcEEEEeCCCCceEEEEcC---------CCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEc
Q 002494 610 --------------FQIKFWDMDNMNMLTTVDA---------DGGLPASPRLRFNKEGSLLAVTT-SDNGIKILAN 661 (915)
Q Consensus 610 --------------g~i~iwd~~~~~~~~~~~~---------~~~~~~v~~v~~s~~~~~l~s~~-~dg~i~iwd~ 661 (915)
.-|+++++..+........ +.. ..=..+.|+|||++++..| ..|...||-+
T Consensus 306 ~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q-~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 306 VDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQ-VTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ---------------EEEEEETTTTEEEEEEE-------BTTBSS-TT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCc-cCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 2567788887654322211 110 0123589999999877665 4677777654
|
|
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.6e-06 Score=86.91 Aligned_cols=171 Identities=15% Similarity=0.205 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHhhCCCC--------chHHHHHHHHcCCHHHHHHHHcCCCcccccccchhHHHHHH
Q 002494 6 RELVFLILQFLDEEKFKETVHKLEQESGFFF--------NMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIR 77 (915)
Q Consensus 6 ~ev~rli~q~L~~~g~~~s~~~L~~ESg~~~--------~~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~ 77 (915)
.-+.|+|..||..+||.+||..|-++|.+.- ++..+++++++|+...|+.-...-+..-. +....+-|.+.
T Consensus 116 ~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~lR 194 (389)
T KOG0396|consen 116 NKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQLR 194 (389)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhHHH
Confidence 3467999999999999999999999999872 37889999999999888877665411111 11233779999
Q ss_pred HHHHHHHHhccCHHHHHHHHHHhcccccccCHHHHHHHHHhhccccccccccccccCC-chHHHHHHHH--HHHHHhhcC
Q 002494 78 KQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-TKSARNIMLV--ELKKLIEAN 154 (915)
Q Consensus 78 ~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~r~~l~~--~l~~~i~~~ 154 (915)
.|.|+||+..+++.+|+.+.++++.|...-+.++++....++.++...+... |.. ....|=..+. +++.+.+.-
T Consensus 195 lQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sk---y~~l~~~~rw~~l~~lF~s~a~~l~ 271 (389)
T KOG0396|consen 195 LQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSK---YLNLLTADRWSVLADLFLSEALKLF 271 (389)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCccc---ccCcccHHHHHHHHHHhhHHHHHHh
Confidence 9999999999999999999999999998878899999999998765544332 222 2344534444 566666531
Q ss_pred cCccccCCCCCCCchHHHHHHHHHHHHHHh-hccCC
Q 002494 155 PLFRDKLSFPSFKSSRLRTLINQSLNWQHQ-LCKNP 189 (915)
Q Consensus 155 ~~~~~~~~~~~~p~~rL~~ll~qal~~q~~-~~~~~ 189 (915)
.+|+ ..+|..+|+-.+..|.. .|...
T Consensus 272 -------~i~~--~~~L~~~l~~GLsalKTp~c~~~ 298 (389)
T KOG0396|consen 272 -------GIPI--NPALTIYLQAGLSALKTPRCLND 298 (389)
T ss_pred -------CCCC--CcHHHHHHHhhhhhccccccccc
Confidence 1221 22577788777766653 44433
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.8e-06 Score=86.24 Aligned_cols=167 Identities=17% Similarity=0.239 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeE-EEEEEeCCCcEEEEEcCCCee
Q 002494 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL-CIVTCGDDKMIKVWDVVAGRK 489 (915)
Q Consensus 411 v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~-~l~s~~~d~~i~vwd~~~~~~ 489 (915)
...+..+++++++|++..+....++++..............-...-+++.|..+.... ....++....+.+|....+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 4445677888889888888887777776544311111111122334455555555531 122234455666676555544
Q ss_pred EEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEe-cCCCCcEEEEEECCCCCEEEEEeecCCCCce
Q 002494 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (915)
Q Consensus 490 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~ 568 (915)
. .+-+|-+.+..++++|++ ++|+++..|..|++-.+...-.+..+ -+|..-|..++.-++. .|++++ ||++
T Consensus 145 ~-~~lGhvSml~dVavS~D~--~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~s----GD~t 216 (390)
T KOG3914|consen 145 E-PILGHVSMLLDVAVSPDD--QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGS----GDKT 216 (390)
T ss_pred c-hhhhhhhhhheeeecCCC--CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecC----CCCc
Confidence 4 445899999999999865 89999999999999876654444333 3588889999886654 477776 5889
Q ss_pred EEEEECCCCeeEEEecC
Q 002494 569 LVEWNESEGAIKRTYSG 585 (915)
Q Consensus 569 i~~wd~~~~~~~~~~~~ 585 (915)
+++||+.+|+.+.++..
T Consensus 217 lr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 217 LRLWDITSGKLLDTCDL 233 (390)
T ss_pred EEEEecccCCcccccch
Confidence 99999999998866543
|
|
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=81.31 Aligned_cols=134 Identities=20% Similarity=0.214 Sum_probs=98.5
Q ss_pred hHHHHHHHHcCCHHHHHHHHcCCCcccccccchhHHHHHHHHHHHHHHhccCHHHHHHHHHHhcccccccCHHHHHHHHH
Q 002494 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQ 117 (915)
Q Consensus 38 ~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~ 117 (915)
...++++|++|+++.|++.+.....--... ...+.|.|+.|+|+|||..++..+|+.+.|+++.|......+++.++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 467899999999999999998873211111 2348899999999999999999999999999997755435678888888
Q ss_pred hhccccccc--cccccccCCchHHHHHHHHHHHHHhhcCcCccccCCCCCCC-chHHHHHHHHHHHHH
Q 002494 118 LLTLDNFRQ--NEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFK-SSRLRTLINQSLNWQ 182 (915)
Q Consensus 118 l~~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~~~~~~~~~p-~~rL~~ll~qal~~q 182 (915)
++......+ ...+..+- ....|+.+.+.+.+.+-...- +| .+.|..++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 888766554 22333332 337789999999887765332 34 467888888776443
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.8e-06 Score=77.90 Aligned_cols=202 Identities=11% Similarity=0.066 Sum_probs=112.6
Q ss_pred eeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecC--CCCCEEEEEeec--------CCCccEEEEEeCCCeEEE
Q 002494 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVCPHH--------KESIQFIFSTAIDGKIKA 525 (915)
Q Consensus 456 v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~i~~~~--------~~~~~~l~s~~~dg~i~i 525 (915)
++.+.++-+. .|+++..++.+......++.+....+. ..++..+.+.+. .-.++-++++..||.+.+
T Consensus 39 ~~~~~~v~~~---~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSAEY---ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAV 115 (319)
T ss_pred EEEeechhhh---eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEE
Confidence 5555665443 366666666665555444333222210 111122222110 012356999999999999
Q ss_pred EecCCCCcee-EecCCCCcEEEEEECCCCCEEEEEeec-CCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCC-E
Q 002494 526 WLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTS-KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-R 602 (915)
Q Consensus 526 wd~~~~~~~~-~~~~~~~~i~~~~~sp~g~~l~~~~~~-~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~ 602 (915)
++.+...... ........-.+.++...++.+.++... -+..+..+.|+++..+....-..... .|.+++-+|..+ .
T Consensus 116 ~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~-~v~~l~~hp~qq~~ 194 (319)
T KOG4714|consen 116 FSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD-AVTALCSHPAQQHL 194 (319)
T ss_pred EechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccc-cchhhhCCcccccE
Confidence 9876521111 111111111223333455555544310 00122345565543222111111122 588888888655 5
Q ss_pred EEEEeCCCcEEEEeCCCCceEE-EEcCCCCCCCcceEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q 002494 603 FLAAGDEFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSD 663 (915)
Q Consensus 603 l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i~iwd~~~ 663 (915)
+++|++||.+-+||.++..... .+..|.. +++.+-|+| ++..|++++.||.+.-||..+
T Consensus 195 v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~--~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 195 VCCGTDDGIVGLWDARNVAMPVSLLKAHKA--EIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEecCCCeEEEEEcccccchHHHHHHhhh--hhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 5668899999999999874433 3344544 899999999 788999999999999999875
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.9e-05 Score=88.65 Aligned_cols=243 Identities=11% Similarity=0.079 Sum_probs=143.3
Q ss_pred CccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCC
Q 002494 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~ 486 (915)
....|.++.|.-++..++.+..+|.|.+-|.++... . ....-...|.+++||||+. .++..+.++++.+-+ .+
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-e---ivg~vd~GI~aaswS~Dee--~l~liT~~~tll~mT-~~ 139 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL-E---IVGNVDNGISAASWSPDEE--LLALITGRQTLLFMT-KD 139 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccce-e---eeeeccCceEEEeecCCCc--EEEEEeCCcEEEEEe-cc
Confidence 346899999999999999999999999998877432 1 2223466899999999999 677777667776543 32
Q ss_pred CeeEEEecCC-----CCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 002494 487 GRKQYTFEGH-----EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (915)
Q Consensus 487 ~~~~~~~~~~-----~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~ 561 (915)
-.++..-.-+ .+..-.+-|-... .-+.|+. |.....+................=++++|--||.++++...
T Consensus 140 f~~i~E~~L~~d~~~~sk~v~VGwGrke---Tqfrgs~-gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~ 215 (1265)
T KOG1920|consen 140 FEPIAEKPLDADDERKSKFVNVGWGRKE---TQFRGSE-GRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFV 215 (1265)
T ss_pred ccchhccccccccccccccceecccccc---eeeecch-hhhcccccccccccccchhhccCCceEEEccCCcEEEEEEE
Confidence 2222111100 1111122221110 1111111 11111110000000000001122357999999999998665
Q ss_pred cCCCC-ceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe---CCCcEEEEeCCCC---ceEEEEcCCCCCCC
Q 002494 562 SKEGE-SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG---DEFQIKFWDMDNM---NMLTTVDADGGLPA 634 (915)
Q Consensus 562 ~~~~~-~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~---~dg~i~iwd~~~~---~~~~~~~~~~~~~~ 634 (915)
....+ ..|++||.+ |..-..-....+ .-.+++|-|.|..+++.. .|+.|.++..+.- +....++.. ...
T Consensus 216 ~~~~~~RkirV~drE-g~Lns~se~~~~-l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d--e~~ 291 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDRE-GALNSTSEPVEG-LQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD--EKE 291 (1265)
T ss_pred eccCCceeEEEeccc-chhhcccCcccc-cccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccc--ccc
Confidence 44334 789999977 544322222222 456799999999998853 5668999987532 222222222 225
Q ss_pred cceEEEcCCCCEEEE---EeCCCcEEEEEcCCC
Q 002494 635 SPRLRFNKEGSLLAV---TTSDNGIKILANSDG 664 (915)
Q Consensus 635 v~~v~~s~~~~~l~s---~~~dg~i~iwd~~~~ 664 (915)
|..++|+.++..||+ ......|++|-+.+-
T Consensus 292 ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 292 VEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred hheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 899999999999998 555556999987653
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0004 Score=71.18 Aligned_cols=270 Identities=16% Similarity=0.207 Sum_probs=160.9
Q ss_pred CcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEE----------CCCeEEEEEec
Q 002494 369 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF----------SKHIVHLYTYN 438 (915)
Q Consensus 369 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~----------~dg~i~vwd~~ 438 (915)
+.+.++|..+++.+... ..+-.-.+..+||++.+.+++ ..-.|.+||..
T Consensus 17 ~rv~viD~d~~k~lGmi---------------------~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~ 75 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMI---------------------DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ 75 (342)
T ss_dssp EEEEEEETTTTEEEEEE---------------------EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred ceEEEEECCCCcEEEEe---------------------ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC
Confidence 47889998888765421 223344567899999988753 24469999998
Q ss_pred CCCceeeeEEeec-cc----CCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccE
Q 002494 439 PTGELRQHLEIDA-HV----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQF 513 (915)
Q Consensus 439 ~~~~~~~~~~~~~-h~----~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 513 (915)
+-.....+ .+.. |. ......+++.|++.+++.=.+-..+|.|.|+..++.+..+.. .+ ...+ .|.++ .-
T Consensus 76 TL~~~~EI-~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PG-C~~i--yP~~~-~~ 149 (342)
T PF06433_consen 76 TLSPTGEI-EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PG-CWLI--YPSGN-RG 149 (342)
T ss_dssp TTEEEEEE-EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TS-EEEE--EEEET-TE
T ss_pred cCcccceE-ecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CC-EEEE--EecCC-Cc
Confidence 86544332 2221 11 123456889999965455556677899999999998887752 22 2222 23333 35
Q ss_pred EEEEeCCCeEEEEecCCCCceeE-----ecCCCCc-EEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeE--EEecC
Q 002494 514 IFSTAIDGKIKAWLYDYLGSRVD-----YDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK--RTYSG 585 (915)
Q Consensus 514 l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~-i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~--~~~~~ 585 (915)
+.+-+.||.+....++..+.... +.....+ +..-+++..+..++..+. .|.|+--|+...... .....
T Consensus 150 F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy----~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY----EGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBT----TSEEEEEEETTSSEEEEEEEES
T ss_pred eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEec----CCEEEEEeccCCcccccCcccc
Confidence 88889999999998885544331 1111222 223344444444444443 666887777654321 11211
Q ss_pred CC-----C----CceEEEEEcCCCCEEEEEe---CCC-------cEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCC-
Q 002494 586 FR-----K----RSLGVVQFDTTRNRFLAAG---DEF-------QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS- 645 (915)
Q Consensus 586 ~~-----~----~~v~~~~~sp~~~~l~s~~---~dg-------~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~- 645 (915)
.. . ....-+++++..++|++.- .+| .|.++|+.+++.+..+.... ++.+++.+.+.+
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~---~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH---PIDSIAVSQDDKP 302 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE---EESEEEEESSSS-
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC---ccceEEEccCCCc
Confidence 00 0 0233477887666666532 122 48888999999999998643 678999999665
Q ss_pred EEEEE-eCCCcEEEEEcCCCceeeeeccC
Q 002494 646 LLAVT-TSDNGIKILANSDGVRLLRMLEG 673 (915)
Q Consensus 646 ~l~s~-~~dg~i~iwd~~~~~~~~~~~~~ 673 (915)
+|++. ..++.+.+||..+| +.++.+.+
T Consensus 303 ~L~~~~~~~~~l~v~D~~tG-k~~~~~~~ 330 (342)
T PF06433_consen 303 LLYALSAGDGTLDVYDAATG-KLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEEEEEETTT---EEEEE--
T ss_pred EEEEEcCCCCeEEEEeCcCC-cEEeehhc
Confidence 55544 45799999999999 66766653
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0024 Score=61.51 Aligned_cols=128 Identities=13% Similarity=0.020 Sum_probs=85.9
Q ss_pred CCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCC
Q 002494 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (915)
Q Consensus 420 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 499 (915)
..+++.|+..+.+.--|..+|+..... .+ ...+.+-+.- -|+ +++.|...|.+++.+..+|.....+.... .
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~-il---g~RiE~sa~v-vgd--fVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEA-IL---GVRIECSAIV-VGD--FVVLGCYSGGLYFLCVKTGSQIWNFVILE-T 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeeh-hh---CceeeeeeEE-ECC--EEEEEEccCcEEEEEecchhheeeeeehh-h
Confidence 346677888888888888887654321 11 1223322222 355 68999999999999999998777765322 2
Q ss_pred EEE-EEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECC-CCCEEE
Q 002494 500 VYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA-DGTRLF 557 (915)
Q Consensus 500 v~~-i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~ 557 (915)
|.+ ... +.++..+..|+.|++.+..|.++..++...+..+....+-+..| ++...+
T Consensus 95 vk~~a~~--d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~ 152 (354)
T KOG4649|consen 95 VKVRAQC--DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA 152 (354)
T ss_pred hccceEE--cCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE
Confidence 221 122 23557999999999999999999988888776666555556666 444433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.2e-05 Score=85.27 Aligned_cols=277 Identities=14% Similarity=0.193 Sum_probs=156.6
Q ss_pred CCEEEEEEcCCCCeEEEEEe----CCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCE
Q 002494 347 SNVMSMDFHPQQQTILLVGT----NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (915)
Q Consensus 347 ~~V~~v~fspd~~~ll~~gs----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ 422 (915)
..-+-..|+|..+ ++|+++ ..|.|.||- ++|++....+ ..-.+++++|+|..-.
T Consensus 16 avsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--------------------~P~hatSLCWHpe~~v 73 (1416)
T KOG3617|consen 16 AVSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT--------------------YPVHATSLCWHPEEFV 73 (1416)
T ss_pred ccccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc--------------------cceehhhhccChHHHH
Confidence 3444567999998 677765 457888884 5565443211 1223567999999999
Q ss_pred EEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEE-----------
Q 002494 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY----------- 491 (915)
Q Consensus 423 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----------- 491 (915)
|+.|-.-|.+.+|...+.+. ......|..+|..+.||++|. .++++..-|.+.+|....-..++
T Consensus 74 La~gwe~g~~~v~~~~~~e~---htv~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~ 148 (1416)
T KOG3617|consen 74 LAQGWEMGVSDVQKTNTTET---HTVVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELND 148 (1416)
T ss_pred HhhccccceeEEEecCCcee---eeeccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhc
Confidence 99999999999999876432 224457999999999999999 89999999999999865211111
Q ss_pred -------Eec---------------CCCCCEE------------EEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEe
Q 002494 492 -------TFE---------------GHEAPVY------------SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (915)
Q Consensus 492 -------~~~---------------~~~~~v~------------~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 537 (915)
.+. +....+- +..=+..++|..++.++.+|+|+-.|-.. ......
T Consensus 149 ~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g-~~~~V~ 227 (1416)
T KOG3617|consen 149 QLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNG-RQRTVH 227 (1416)
T ss_pred eeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCC-cEEEEE
Confidence 000 0000000 00011123457788888899888776332 222111
Q ss_pred c----------CCCCcEEEEE-EC--------CCCCE-----EEEEeecCCCCceEEEEECCCCee--EEEecCCCCCce
Q 002494 538 D----------APGNWCTMMA-YS--------ADGTR-----LFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSL 591 (915)
Q Consensus 538 ~----------~~~~~i~~~~-~s--------p~g~~-----l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v 591 (915)
. .....+..+. +. +.|.. +-..+..+...|.|.+-... |-. -.++.-..+..+
T Consensus 228 k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss-GvLr~~eKyg~e~ge~~ 306 (1416)
T KOG3617|consen 228 KLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS-GVLRKSEKYGLELGEGI 306 (1416)
T ss_pred EccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc-ccccCCcchhhhcCCce
Confidence 1 1111121111 11 11110 00000000011112111111 100 011222233479
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------ceEEEEcCC-CCCCCcceEEEcCCCCEEEEEeC
Q 002494 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNM-------NMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTS 652 (915)
Q Consensus 592 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~-~~~~~v~~v~~s~~~~~l~s~~~ 652 (915)
.|++++..+..++.|...|.+.+|--... .....+.+. .....|+.+.|.|-.+.+++-+.
T Consensus 307 ~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~ 375 (1416)
T KOG3617|consen 307 LCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTE 375 (1416)
T ss_pred EEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhh
Confidence 99999999999999999999999964332 334444443 22347889999996665555443
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00013 Score=79.64 Aligned_cols=286 Identities=11% Similarity=0.065 Sum_probs=163.2
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
+...|.--+++..++ +++.|+..|.+++|+-.+++....+ ..+..+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhh
Confidence 445566666777777 4788999999999998888755321 122455677778899999999
Q ss_pred EEECCCeEEEEEecCCCceeeeEE--e-ecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC----eeEEEecCCC
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLE--I-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 497 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~--~-~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~ 497 (915)
.|+..|.|.++-+..+........ . ..|...|++++|++++. .+++|...|.|..-.+.+. ...+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 999999999998877443222111 1 23678999999999999 5999999999998887762 1122333455
Q ss_pred CCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCcee--EecCCCCcEEEEEECCC----CCEEEEEeecCCCCceEEE
Q 002494 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSAD----GTRLFSCGTSKEGESHLVE 571 (915)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~sp~----g~~l~~~~~~~~~~~~i~~ 571 (915)
+.|-.+... ++.+|++... .. .+++.+...... .....+..-...+|-|. .+-.+.|+. .-.++
T Consensus 171 s~IVQlD~~---q~~LLVStl~-r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR-----PG~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYL---QSYLLVSTLT-RC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR-----PGLRL 240 (726)
T ss_pred cceEEeecc---cceehHhhhh-hh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEec-----CCCce
Confidence 667666543 2233433332 22 233333222111 00111111233444443 333444442 22677
Q ss_pred EECC-CCeeEEEecCCC------CC--ceEE---------------EEE----cCCCCEEEEEeCCCcEEEEeCCCCceE
Q 002494 572 WNES-EGAIKRTYSGFR------KR--SLGV---------------VQF----DTTRNRFLAAGDEFQIKFWDMDNMNML 623 (915)
Q Consensus 572 wd~~-~~~~~~~~~~~~------~~--~v~~---------------~~~----sp~~~~l~s~~~dg~i~iwd~~~~~~~ 623 (915)
|... .|+.++++.-.. .. .+.+ +.| .-.+..+++-++-| |+|+|.++...+
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~ 319 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY 319 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence 8664 355444432100 00 0000 111 01122344444444 889998876655
Q ss_pred EEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 002494 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRL 667 (915)
Q Consensus 624 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 667 (915)
.-..... .|..+ +.+|+-|++-..||.+++..+.+..+.
T Consensus 320 l~se~~~---DI~dV--s~~~neiFvL~~d~~l~~~sv~s~qr~ 358 (726)
T KOG3621|consen 320 LWSEGGH---DILDV--SHCGNEIFVLNLDRGLKVESVASRQRK 358 (726)
T ss_pred EeecCCC---ceeEE--eecCceEEEEecCCceeEEEeehhHHH
Confidence 4443322 44333 445777777778888888888776443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.6e-05 Score=88.57 Aligned_cols=184 Identities=13% Similarity=0.105 Sum_probs=141.1
Q ss_pred EEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEE
Q 002494 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (915)
Q Consensus 469 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 548 (915)
.++.|+....+..+|+++.+..+...-..+.|.-++. +++++.+|...|+|.+-|.++.+....+..|.+.+..+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 4777888888999999998887766555556777764 447899999999999999999999999999999887654
Q ss_pred ECCCCCEEEEEeecCC-----CCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEeCCC-Cc
Q 002494 549 YSADGTRLFSCGTSKE-----GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDN-MN 621 (915)
Q Consensus 549 ~sp~g~~l~~~~~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~-~~ 621 (915)
-.|+.|++||.+.. .|..|++||++..+.+.-+.-+.+ ..-+.|+|.- ..+++++..|...+-|..+ +.
T Consensus 225 --v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 225 --VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred --ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccceEEEEecccceeeccccccCC
Confidence 57889999987553 367899999998776665554443 2446788853 4677888899999999432 22
Q ss_pred e-EEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 002494 622 M-LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (915)
Q Consensus 622 ~-~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd 660 (915)
+ ...+..+.....+..+++|++|+.+|.|..+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2 22333333333589999999999999999999999998
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.4e-05 Score=76.86 Aligned_cols=243 Identities=11% Similarity=0.115 Sum_probs=134.5
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCC-EE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-ML 423 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~l 423 (915)
+...|..++|||..+-++..++.+..|+|.|+++...... +..+ ..+++++|.-|.. ++
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeeccCCccee
Confidence 7889999999999877888899999999999999776643 2234 7899999998765 66
Q ss_pred EEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEe------cCCCeEEEEEEeCCCcEEEEEcCC--CeeEEEec-
Q 002494 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA------HPNKQLCIVTCGDDKMIKVWDVVA--GRKQYTFE- 494 (915)
Q Consensus 424 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s------~~~~~~~l~s~~~d~~i~vwd~~~--~~~~~~~~- 494 (915)
..|..+|.|.|||+...+.......-.-...+|..++.- +.+. +++..+.+ +..|++.- +.....++
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCCCccccc
Confidence 677789999999998755332111111112344444332 3344 34433332 44555432 11111111
Q ss_pred CCCCCEEEEEeecCCCccEEEEEeCCCe------EEE-EecCCCCceeEe-cCC-CC------cEEEEEECCCCCEEEEE
Q 002494 495 GHEAPVYSVCPHHKESIQFIFSTAIDGK------IKA-WLYDYLGSRVDY-DAP-GN------WCTMMAYSADGTRLFSC 559 (915)
Q Consensus 495 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~------i~i-wd~~~~~~~~~~-~~~-~~------~i~~~~~sp~g~~l~~~ 559 (915)
+..+...++..++..+ +.+++.-.+-+ +-. -|..++..+... ..+ +. .-..+.-.++.++++..
T Consensus 328 e~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~ 406 (463)
T KOG1645|consen 328 EPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV 406 (463)
T ss_pred CCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEe
Confidence 1234444444444322 33333322110 100 011111111110 001 11 01122223566666654
Q ss_pred eecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcC-CCC-EEEEEeCCCcEEEEeCC
Q 002494 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT-TRN-RFLAAGDEFQIKFWDMD 618 (915)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp-~~~-~l~s~~~dg~i~iwd~~ 618 (915)
+. ..+.+.+||..+++.++++.... +|..++... ++. +|++-. |..++||..+
T Consensus 407 gd---~tn~lil~D~~s~evvQ~l~~~e--pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 407 GD---STNELILQDPHSFEVVQTLALSE--PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred cC---CcceeEEeccchhheeeecccCc--ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 42 36779999999999999988763 677665433 343 454444 5578888654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00014 Score=81.13 Aligned_cols=200 Identities=17% Similarity=0.230 Sum_probs=127.6
Q ss_pred EEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCC-----cEEEEEcCCC--
Q 002494 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-----MIKVWDVVAG-- 487 (915)
Q Consensus 415 ~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~-----~i~vwd~~~~-- 487 (915)
+|++.+..+|.|+.+|.|.+++-.- .....+..+...+...-|.-++.. +|++.+.|+ .++|||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~----~~~~~fqa~~~siv~~L~~~~~~~-~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF----QLIRGFQAYEQSIVQFLYILNKQN-FLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc----eeeehheecchhhhhHhhcccCce-EEEEEeecCCCCceEEEEecccccCC
Confidence 4688999999999999988876322 211245556656333344445544 677766654 4899998632
Q ss_pred ----eeEE--EecC-----CCCCEEEEEeecCCCccEEEEEeCCCeEEEEecC---CCCceeEe-cCCCCcEEEEEECCC
Q 002494 488 ----RKQY--TFEG-----HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD---YLGSRVDY-DAPGNWCTMMAYSAD 552 (915)
Q Consensus 488 ----~~~~--~~~~-----~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~-~~~~~~i~~~~~sp~ 552 (915)
.++. .+.. ...++.+++++.+ -+.+++|-.+|.|..+.-+ .......+ .....+|+.+++..+
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~--l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSED--LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEcc--ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 2331 1212 3566778888765 3789999999999988432 12222222 234569999999999
Q ss_pred CCEE-EEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEc
Q 002494 553 GTRL-FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (915)
Q Consensus 553 g~~l-~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 627 (915)
++.+ ++++ ...|.+|.+....+......+.+..++|..+++....+++++.. .+++|+....++-..+.
T Consensus 183 ~~s~lFv~T-----t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVAT-----TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEe-----cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeec
Confidence 9873 3333 34588999874433333233444489999998766656666554 59999998655555554
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00087 Score=74.45 Aligned_cols=283 Identities=13% Similarity=0.076 Sum_probs=155.3
Q ss_pred eEEEEEeCCCcEEEEEcCCCceecccce------eeeecccCccccccccc-CC--CccCeEEEEEc-----CCCCEEEE
Q 002494 360 TILLVGTNVGDISLWEVGSRERLAHKPF------KVWDISAASMPLQNALL-ND--AAISVNRCVWG-----PDGLMLGV 425 (915)
Q Consensus 360 ~ll~~gs~dg~v~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~--~~~~v~~~~~s-----pd~~~l~s 425 (915)
|.+.+|+..|.|+|+-+.++..+....+ .-|-+...+........ .+ ..+......+| .||++|..
T Consensus 67 y~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fi 146 (635)
T PRK02888 67 YGFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFI 146 (635)
T ss_pred EEEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEE
Confidence 5678899999999999999987764222 12222211111110000 00 01111112222 26788877
Q ss_pred EEC-CCeEEEEEecCCCceeeeEEeecccCCeeEE-------------------EEecCCCeEEEEEEeCCCcEEEEEcC
Q 002494 426 AFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDI-------------------AFAHPNKQLCIVTCGDDKMIKVWDVV 485 (915)
Q Consensus 426 ~~~-dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~-------------------~~s~~~~~~~l~s~~~d~~i~vwd~~ 485 (915)
-.. +..|...+++..++-+ +..+. ....+..+ -++|||+. +..+.-..+.+.+.|..
T Consensus 147 ndk~n~Rvari~l~~~~~~~-i~~iP-n~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~-l~~~~ey~~~vSvID~e 223 (635)
T PRK02888 147 NDKANTRVARIRLDVMKCDK-ITELP-NVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKD-LDDPKKYRSLFTAVDAE 223 (635)
T ss_pred ecCCCcceEEEECccEeece-eEeCC-CccCccccCccccCCccEEEeCcccccccCCCCCE-eecccceeEEEEEEECc
Confidence 654 4555555555433211 11111 11122222 23455552 22333344567777777
Q ss_pred CCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCC----CeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 002494 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (915)
Q Consensus 486 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~ 561 (915)
+.+...++.-- .....+.+++ +|.++++.+.+ +++..-+.........+.... + -.+.++|++....
T Consensus 224 tmeV~~qV~Vd-gnpd~v~~sp--dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V~-- 294 (635)
T PRK02888 224 TMEVAWQVMVD-GNLDNVDTDY--DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTIG-- 294 (635)
T ss_pred cceEEEEEEeC-CCcccceECC--CCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEEC--
Confidence 76665555422 2334556666 44666666532 223333222211111111110 0 1334678876653
Q ss_pred cCCCCceEEEEECCC-----CeeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCce------------E
Q 002494 562 SKEGESHLVEWNESE-----GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM------------L 623 (915)
Q Consensus 562 ~~~~~~~i~~wd~~~-----~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~------------~ 623 (915)
.+.|.+.|.++ .+.+..+.... ....+.++|||+++++++ .+++|.|.|+.+.+. +
T Consensus 295 ----gn~V~VID~~t~~~~~~~v~~yIPVGK--sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv 368 (635)
T PRK02888 295 ----GSKVPVVDGRKAANAGSALTRYVPVPK--NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV 368 (635)
T ss_pred ----CCEEEEEECCccccCCcceEEEEECCC--CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE
Confidence 45699999988 34555555433 578899999999988866 588999999987542 3
Q ss_pred EEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 002494 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (915)
Q Consensus 624 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 663 (915)
...... . .-...+|+++|+...+..-|..|-.||+.+
T Consensus 369 aevevG--l-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 369 AEPELG--L-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EeeccC--C-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333332 2 234689999999888888999999999986
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00075 Score=73.25 Aligned_cols=233 Identities=15% Similarity=0.169 Sum_probs=119.9
Q ss_pred cCCCCEEEEEE---------CCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC
Q 002494 417 GPDGLMLGVAF---------SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (915)
Q Consensus 417 spd~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~ 487 (915)
|||+++++... ..+.+.+||+++++.. .+......+....|||+|+ .++-. .++.|.+++..++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~----~l~~~~~~~~~~~~sP~g~--~~~~v-~~~nly~~~~~~~ 73 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT----PLTPPPPKLQDAKWSPDGK--YIAFV-RDNNLYLRDLATG 73 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE----ESS-EETTBSEEEE-SSST--EEEEE-ETTEEEEESSTTS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE----ECcCCccccccceeecCCC--eeEEE-ecCceEEEECCCC
Confidence 68888887743 2467899999985432 2222256789999999999 45444 3678999998777
Q ss_pred eeEE-EecCC----------------CCCEEEEEeecCCCccEEEEEeC-CCeEEEEecCCCCceeEecCCC---CcEEE
Q 002494 488 RKQY-TFEGH----------------EAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPG---NWCTM 546 (915)
Q Consensus 488 ~~~~-~~~~~----------------~~~v~~i~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~---~~i~~ 546 (915)
...+ +..+. -+.-..+-|+|++ ++|+.... +..++.+.+- ...... ..+..
T Consensus 74 ~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~--~~la~~~~d~~~v~~~~~~------~~~~~~~~yp~~~~ 145 (353)
T PF00930_consen 74 QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS--KYLAFLRFDEREVPEYPLP------DYSPPDSQYPEVES 145 (353)
T ss_dssp EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS--SEEEEEEEE-TTS-EEEEE------EESSSTESS-EEEE
T ss_pred CeEEeccccceeEEcCccceeccccccccccceEECCCC--CEEEEEEECCcCCceEEee------ccCCccccCCcccc
Confidence 5433 22220 0112345677754 56665543 3333333221 011111 13444
Q ss_pred EEECCCCCEEEEEeecCCCCceEEEEECCCCeeEE-Eec---CCCCCceEEEEEcCCCCEEEEE--eCC---CcEEEEeC
Q 002494 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR-TYS---GFRKRSLGVVQFDTTRNRFLAA--GDE---FQIKFWDM 617 (915)
Q Consensus 547 ~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~---~~~~~~v~~~~~sp~~~~l~s~--~~d---g~i~iwd~ 617 (915)
+.+-.-|.-... ..+.++|+.+++... ... ......+..+.|.+++..|+.. ..+ ..+.++|.
T Consensus 146 ~~YPk~G~~np~--------v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~ 217 (353)
T PF00930_consen 146 IRYPKAGDPNPR--------VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDA 217 (353)
T ss_dssp EE--BTTS---E--------EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEE
T ss_pred cccCCCCCcCCc--------eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEEC
Confidence 444333332222 237889998887632 122 1223378899999999844443 322 24777888
Q ss_pred CCCceEEEEc--CCCCCCCcceEEEc-CCCC-EEEEEeCCCcEEEEEcCCCceeeeecc
Q 002494 618 DNMNMLTTVD--ADGGLPASPRLRFN-KEGS-LLAVTTSDNGIKILANSDGVRLLRMLE 672 (915)
Q Consensus 618 ~~~~~~~~~~--~~~~~~~v~~v~~s-~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~ 672 (915)
.+++...... ...-...-....|. +++. ++.....||.-+|+-+.......+.+.
T Consensus 218 ~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT 276 (353)
T PF00930_consen 218 STGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLT 276 (353)
T ss_dssp CTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS
T ss_pred CCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccc
Confidence 7765443332 22212223355554 5444 555555677766665543322333444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.6e-05 Score=84.84 Aligned_cols=186 Identities=11% Similarity=0.091 Sum_probs=117.2
Q ss_pred eEEEEecCCCeEEEEEEe----CCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCC
Q 002494 457 NDIAFAHPNKQLCIVTCG----DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG 532 (915)
Q Consensus 457 ~~~~~s~~~~~~~l~s~~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 532 (915)
+-..|+|..+ +++.++ ..|+|.||- .+|++..... ..-.++++||+|.. -.++.|-.-|.+.+|...+.+
T Consensus 19 ti~SWHPseP--lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~--~vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 19 TISSWHPSEP--LFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEE--FVLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred cccccCCCCc--eeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHH--HHHhhccccceeEEEecCCce
Confidence 3457889888 666664 457888886 6777544332 33446679999965 567888889999999988776
Q ss_pred ceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEE--ecCCC-CC--ceEEEEEcCCCCE-----
Q 002494 533 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT--YSGFR-KR--SLGVVQFDTTRNR----- 602 (915)
Q Consensus 533 ~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~--~~~~~-~~--~v~~~~~sp~~~~----- 602 (915)
.-.....|..+|..+.||++|..++++. ..|.+.+|....-..++. +-.|. +. ...|...++++.-
T Consensus 93 ~htv~~th~a~i~~l~wS~~G~~l~t~d----~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSHDGTVLMTLD----NPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred eeeeccCCCCCceeEEecCCCCeEEEcC----CCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 6666677888999999999999999885 477899997653222221 11111 11 3445556776432
Q ss_pred -EEEEeCCCcEE-EEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 002494 603 -FLAAGDEFQIK-FWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 603 -l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 662 (915)
.++++++..+- .++.+......... +. . .|+|..+..++.+|+|+--|-.
T Consensus 169 KaaVtgDe~alD~~fnwk~~~a~rs~~-ks---g------v~~g~~F~~~~~~GtVyyvdq~ 220 (1416)
T KOG3617|consen 169 KAAVTGDESALDEPFNWKESLAERSDE-KS---G------VPKGTEFLFAGKSGTVYYVDQN 220 (1416)
T ss_pred hhhccCchhhhcccccCccchhhcccc-cc---C------CCCCcEEEEEcCCceEEEEcCC
Confidence 23344443332 33332111111111 11 1 3678889999999999877643
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00082 Score=68.99 Aligned_cols=275 Identities=11% Similarity=0.143 Sum_probs=154.1
Q ss_pred cCCCcccEEEEecCCCCEEEEEEcCCCCeEEEE---------EeCCCcEEEEEcCCCceecccceeeeecccCccccccc
Q 002494 332 QDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLV---------GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (915)
Q Consensus 332 ~d~~~~~~~~~l~h~~~V~~v~fspd~~~ll~~---------gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (915)
.|...++.+-.+.. +-.-.+..|||++.+.+. |-..-.|.+||..+-....+..+ +..+ .
T Consensus 22 iD~d~~k~lGmi~~-g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i-------P~k~--R- 90 (342)
T PF06433_consen 22 IDADSGKLLGMIDT-GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI-------PPKP--R- 90 (342)
T ss_dssp EETTTTEEEEEEEE-ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE-------TTS---B-
T ss_pred EECCCCcEEEEeec-ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec-------CCcc--h-
Confidence 33334454444442 223346789999864433 22334699999998765543221 0000 0
Q ss_pred ccCCCccCeEEEEEcCCCCEEEEEEC--CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEE
Q 002494 403 LLNDAAISVNRCVWGPDGLMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (915)
Q Consensus 403 ~~~~~~~~v~~~~~spd~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~ 480 (915)
.. .......+++|.||++++.... ...|.|-|+..++.+. .+. ...+..+ -|.++. -|.+-+.||.+.
T Consensus 91 ~~--~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~---ei~--~PGC~~i--yP~~~~-~F~~lC~DGsl~ 160 (342)
T PF06433_consen 91 AQ--VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVG---EID--TPGCWLI--YPSGNR-GFSMLCGDGSLL 160 (342)
T ss_dssp ----BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEE---EEE--GTSEEEE--EEEETT-EEEEEETTSCEE
T ss_pred he--ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceee---eec--CCCEEEE--EecCCC-ceEEEecCCceE
Confidence 00 0112234588999999887644 4679999999876554 221 1122222 244433 477888899998
Q ss_pred EEEcC-CCeeEEEe----cCCCCCEE-EEEeecCCCccEEEEEeCCCeEEEEecCCCCceeE--ecCC----------CC
Q 002494 481 VWDVV-AGRKQYTF----EGHEAPVY-SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAP----------GN 542 (915)
Q Consensus 481 vwd~~-~~~~~~~~----~~~~~~v~-~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~----------~~ 542 (915)
-..+. .|+...+. .....++. .-.+.. .+..++..+.+|.|+--|+........ +... .+
T Consensus 161 ~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~--~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG 238 (342)
T PF06433_consen 161 TVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR--DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG 238 (342)
T ss_dssp EEEETSTSSEEEEEEEESSTTTS-B-S--EEET--TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-
T ss_pred EEEECCCCCEeEeeccccCCCCcccccccceEC--CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCc
Confidence 88887 56554322 11122221 112222 223566688899999888876553321 1110 11
Q ss_pred cEEEEEECCCCCEEEEEeec------CCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCC-EEEEEe-CCCcEEE
Q 002494 543 WCTMMAYSADGTRLFSCGTS------KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAG-DEFQIKF 614 (915)
Q Consensus 543 ~i~~~~~sp~g~~l~~~~~~------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~-~dg~i~i 614 (915)
...-+++++..++|++.-.. ++....|.++|+.+++.+.++.... .+.++..+.+.+ +|++.+ .++.+.+
T Consensus 239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~~P~L~~~~~~~~~l~v 316 (342)
T PF06433_consen 239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDDKPLLYALSAGDGTLDV 316 (342)
T ss_dssp SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEEEEESSSS-EEEEEETTTTEEEE
T ss_pred ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceEEEccCCCcEEEEEcCCCCeEEE
Confidence 23346777766666543321 1233469999999999999988643 677889988765 665544 5789999
Q ss_pred EeCCCCceEEEEcCCCC
Q 002494 615 WDMDNMNMLTTVDADGG 631 (915)
Q Consensus 615 wd~~~~~~~~~~~~~~~ 631 (915)
||..+|+.+.++..-+.
T Consensus 317 ~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 317 YDAATGKLVRSIEQLGE 333 (342)
T ss_dssp EETTT--EEEEE---SS
T ss_pred EeCcCCcEEeehhccCC
Confidence 99999999999876543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00047 Score=76.49 Aligned_cols=213 Identities=11% Similarity=-0.011 Sum_probs=126.8
Q ss_pred EEcCCCCEEEEE-ECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCC----CcEEEEEcCCCee
Q 002494 415 VWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRK 489 (915)
Q Consensus 415 ~~spd~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d----~~i~vwd~~~~~~ 489 (915)
=++|||+.+... -..+.+.+.|.++.+...+.. . .+....+.++|+|+ ++++.+.+ .++..-+..+..
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~-V---dgnpd~v~~spdGk--~afvTsyNsE~G~tl~em~a~e~d- 271 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVM-V---DGNLDNVDTDYDGK--YAFSTCYNSEEGVTLAEMMAAERD- 271 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEE-e---CCCcccceECCCCC--EEEEeccCcccCcceeeeccccCc-
Confidence 356788766433 235677888887754443321 1 22456778999999 45554421 223333222211
Q ss_pred EEEecCCCCCEEEEEeecC------CCccEEEEEeCCCeEEEEecCC----CCceeEecCCCCcEEEEEECCCCCEEEEE
Q 002494 490 QYTFEGHEAPVYSVCPHHK------ESIQFIFSTAIDGKIKAWLYDY----LGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (915)
Q Consensus 490 ~~~~~~~~~~v~~i~~~~~------~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~sp~g~~l~~~ 559 (915)
..+.|++. .+|++... .++.|.+.|..+ ......+-..+.....+.++|||++++++
T Consensus 272 -----------~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVa 338 (635)
T PRK02888 272 -----------WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIAN 338 (635)
T ss_pred -----------eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEe
Confidence 22233221 24455544 367899999887 33344444455667899999999999987
Q ss_pred eecCCCCceEEEEECCCCee------------EEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC--------
Q 002494 560 GTSKEGESHLVEWNESEGAI------------KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-------- 619 (915)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~------------~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-------- 619 (915)
+. .+..+.+.|+.+.+. +.+..... .-...+|+++|+.+.+..-|..|..|++.+
T Consensus 339 nk---lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl--GPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~ 413 (635)
T PRK02888 339 GK---LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL--GPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGE 413 (635)
T ss_pred CC---CCCcEEEEEChhhhhhhhccCCccceEEEeeccCC--CcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccc
Confidence 64 467799999987542 33333322 233468999998777788899999999875
Q ss_pred --CceEEEEcCCCCCCC---cceEEEcCCCCEEEEEeC
Q 002494 620 --MNMLTTVDADGGLPA---SPRLRFNKEGSLLAVTTS 652 (915)
Q Consensus 620 --~~~~~~~~~~~~~~~---v~~v~~s~~~~~l~s~~~ 652 (915)
...+..+..|..... ..+=.-.|||++|++...
T Consensus 414 ~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 414 KVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred cCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 234444444332111 111123678999888754
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.7e-06 Score=56.74 Aligned_cols=37 Identities=30% Similarity=0.654 Sum_probs=33.4
Q ss_pred cEEEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 002494 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWE 375 (915)
Q Consensus 338 ~~~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd 375 (915)
++++++. |.+.|++|+|+|+++ ++++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 5677777 999999999999997 689999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.9e-05 Score=85.70 Aligned_cols=182 Identities=11% Similarity=0.113 Sum_probs=127.1
Q ss_pred CCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCC
Q 002494 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (915)
Q Consensus 419 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 498 (915)
++..++.|+-...+..+|+.+.+..+. ..-....|.-++. +++ ++.+|...|+|.+-|..+.+.++++..|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT---TNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee---eeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 455777788778888999998765542 2222334555554 455 789999999999999999999999999999
Q ss_pred CEEEEEeecCCCccEEEEEeC---------CCeEEEEecCCCCceeEecCCCCcEEEEEECCCC-CEEEEEeecCCCCce
Q 002494 499 PVYSVCPHHKESIQFIFSTAI---------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESH 568 (915)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~~~~~~~~ 568 (915)
.|.++.. .|+.|++++. |..|++||++....+.-+..+.++ .-+.|.|.- ..+++++. .|+
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~----sGq 289 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ----SGQ 289 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEec----ccc
Confidence 9998866 4468888875 556899999987765544433332 334566643 34555553 455
Q ss_pred EEEEE---CCCCee-EEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 002494 569 LVEWN---ESEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (915)
Q Consensus 569 i~~wd---~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 617 (915)
..+.| +.+... +..+.. .+..+..++++++|+.++.|..+|.|.+|.-
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p-~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNP-NGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeeccccccCCCccceeEEcc-CCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 77777 332211 222222 2225889999999999999999999999974
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00034 Score=76.47 Aligned_cols=195 Identities=11% Similarity=0.091 Sum_probs=123.3
Q ss_pred cccCCeeEEEEecCCCeEEEEEEeCC--CcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeE--EEE
Q 002494 451 AHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI--KAW 526 (915)
Q Consensus 451 ~h~~~v~~~~~s~~~~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i--~iw 526 (915)
.....+..-+|+|++..+..++-... ..+.++|+.+++...... ..+.-...+|+|++. .++++...||.. .+.
T Consensus 190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~-~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS-KLAFSSSRDGSPDIYLM 267 (425)
T ss_pred ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC-EEEEEECCCCCccEEEE
Confidence 34456778899999996333332222 359999999886544433 222333457888653 556666777774 555
Q ss_pred ecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEE
Q 002494 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (915)
Q Consensus 527 d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 606 (915)
|+....... +....+.-..-.|+|||+.++..+ |+.+...|+++|...+.. ..+..... .-..-.|+|||++++..
T Consensus 268 dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~-~riT~~~~-~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 268 DLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQV-TRLTFSGG-GNSNPVWSPDGDKIVFE 343 (425)
T ss_pred cCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCce-eEeeccCC-CCcCccCCCCCCEEEEE
Confidence 666555333 333333334778999999999876 556677899999886655 33332222 12267899999999886
Q ss_pred eC-CCc--EEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCC
Q 002494 607 GD-EFQ--IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (915)
Q Consensus 607 ~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg 654 (915)
+. +|. |.+.|+.++.....+.... .....+|.++|..+...+..+
T Consensus 344 ~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 344 SSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred eccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccCC
Confidence 64 344 7777777666555544332 345678889998887766543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.3e-06 Score=56.54 Aligned_cols=39 Identities=23% Similarity=0.509 Sum_probs=36.4
Q ss_pred CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 002494 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (915)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 616 (915)
|+++.++.+|.. .|.+++|+|++++|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~-~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS-SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS-SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCC-cEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999998 999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00012 Score=81.01 Aligned_cols=152 Identities=13% Similarity=0.131 Sum_probs=108.1
Q ss_pred CCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCC
Q 002494 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (915)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~ 577 (915)
..+.+++++ +++++.|+.+|.+++++....- .....|... ..+|.++++|+. ||.+.+..+-+.
T Consensus 40 D~is~~av~----~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~----DGkv~I~sl~~~ 103 (846)
T KOG2066|consen 40 DAISCCAVH----DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSD----DGKVVIGSLFTD 103 (846)
T ss_pred hHHHHHHhh----cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecC----CCcEEEeeccCC
Confidence 345555553 2689999999999999865332 111112211 568999999985 778999988888
Q ss_pred eeEEEecCCCCCceEEEEEcCC-----CCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeC
Q 002494 578 AIKRTYSGFRKRSLGVVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (915)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~sp~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~ 652 (915)
+...++.-+. ++.+++++|+ .+.+++||.-| +.++.-+--........+...++|.++.|. |++||=+++
T Consensus 104 ~~~~~~df~r--piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 104 DEITQYDFKR--PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred ccceeEecCC--cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecC
Confidence 7777666544 7999999998 46799999988 888775532222222445555699999997 788888887
Q ss_pred CCcEEEEEcCCCceeeeecc
Q 002494 653 DNGIKILANSDGVRLLRMLE 672 (915)
Q Consensus 653 dg~i~iwd~~~~~~~~~~~~ 672 (915)
+| |+|||+.++ +.+..+.
T Consensus 179 ~G-v~vyd~~~~-~~l~~i~ 196 (846)
T KOG2066|consen 179 DG-VKVYDTPTR-QRLTNIP 196 (846)
T ss_pred CC-cEEEecccc-ceeeccC
Confidence 77 999999988 4444433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00057 Score=76.44 Aligned_cols=205 Identities=12% Similarity=0.099 Sum_probs=131.1
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccC-eEEEEEcCCCCEEEEEECCC-
Q 002494 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS-VNRCVWGPDGLMLGVAFSKH- 430 (915)
Q Consensus 353 ~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~spd~~~l~s~~~dg- 430 (915)
+|++.+. .+|.|+.+|.|.+.+-.-. .+.. +..+... |..+-...+..+|++.+.|+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s~~-~~~~-------------------fqa~~~siv~~L~~~~~~~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSSFQ-LIRG-------------------FQAYEQSIVQFLYILNKQNFLFSVGEDEQ 88 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEecccce-eeeh-------------------heecchhhhhHhhcccCceEEEEEeecCC
Confidence 3567776 6888999999988874321 1111 2334444 44443333446788776654
Q ss_pred ----eEEEEEecCCC------ceeeeEEeec-----ccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcC----CCeeEE
Q 002494 431 ----IVHLYTYNPTG------ELRQHLEIDA-----HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV----AGRKQY 491 (915)
Q Consensus 431 ----~i~vwd~~~~~------~~~~~~~~~~-----h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~----~~~~~~ 491 (915)
.++||+++.-+ ++... .+.. ...++.+++.+.+-+ .+|.|-.+|.|..+.-. .|....
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~-ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~ 165 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEH-RIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQD 165 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeee-eeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhcccccee
Confidence 58999987532 12111 1112 345788999998877 79999999999888522 122222
Q ss_pred EecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCc-eeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEE
Q 002494 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (915)
Q Consensus 492 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~ 570 (915)
-......+|+.+.+..++ ..++.......|.+|.+..... ...+..++....|.++++....+++++ ...+.
T Consensus 166 ~~~~~~~pITgL~~~~d~--~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-----~e~l~ 238 (933)
T KOG2114|consen 166 YSHRGKEPITGLALRSDG--KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-----SEFLY 238 (933)
T ss_pred eeccCCCCceeeEEecCC--ceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-----CceEE
Confidence 222356899999997654 3434444456788999885552 334677888999999988766566664 45699
Q ss_pred EEECCCCeeEEEec-CCCC
Q 002494 571 EWNESEGAIKRTYS-GFRK 588 (915)
Q Consensus 571 ~wd~~~~~~~~~~~-~~~~ 588 (915)
+||......-..|. ++..
T Consensus 239 fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 239 FYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred EEcCCCcceeeeecCCCeE
Confidence 99988666666676 5543
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0052 Score=68.67 Aligned_cols=247 Identities=12% Similarity=0.085 Sum_probs=137.8
Q ss_pred EEEEEEcCCCCeEEEEEeCCC----cEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 349 VMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 349 V~~v~fspd~~~ll~~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
+...++||||++++++-+..| .++++|+.+|+.+.. .+ .......+.|.+|++.|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-------------------~~~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-------------------ENPKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-------------------EEEESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-------------------cccccceEEEeCCCCEEE
Confidence 446789999998776655555 499999999976642 10 111122489999999887
Q ss_pred EEECCC-----------eEEEEEecCCCceeeeEEeecccCC--eeEEEEecCCCeEEEEEEeCC---CcEEEEEcCCC-
Q 002494 425 VAFSKH-----------IVHLYTYNPTGELRQHLEIDAHVGG--VNDIAFAHPNKQLCIVTCGDD---KMIKVWDVVAG- 487 (915)
Q Consensus 425 s~~~dg-----------~i~vwd~~~~~~~~~~~~~~~h~~~--v~~~~~s~~~~~~~l~s~~~d---~~i~vwd~~~~- 487 (915)
....+. .|+.|.+.++..-. ...+...... ...+..++|++. +++..... ..+.+.|+..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~-l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRY-LFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSE-EEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccE-EEEEEEccccCCeEEEEeccccC
Confidence 765332 37778877654321 1133333332 568889999995 33333332 35788887764
Q ss_pred ---eeEEEecCCCCCE-EEEEeecCCCccEEEEEeC---CCeEEEEecCCCCc---eeEecCCCC--cEEEEEECCCCCE
Q 002494 488 ---RKQYTFEGHEAPV-YSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLGS---RVDYDAPGN--WCTMMAYSADGTR 555 (915)
Q Consensus 488 ---~~~~~~~~~~~~v-~~i~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~---~~~~~~~~~--~i~~~~~sp~g~~ 555 (915)
.....+......+ ..+... .+.+++.... ++.|...++..... ...+..+.. .+..+. ..+.+
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~ 338 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDY 338 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCE
Confidence 2233333333333 333332 2234443322 45677777776653 223333433 344444 45666
Q ss_pred EEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEE--Ee--CCCcEEEEeCCCCceE
Q 002494 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AG--DEFQIKFWDMDNMNML 623 (915)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s--~~--~dg~i~iwd~~~~~~~ 623 (915)
|+.... .++...|+++++..+.............+..+...++++.+.. .| .-++++.||+.+++..
T Consensus 339 Lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 339 LVLSYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEEEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 665554 3457789999999455555555444435666666666665443 33 3467899999987654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00078 Score=73.91 Aligned_cols=223 Identities=11% Similarity=0.076 Sum_probs=117.2
Q ss_pred CCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEc
Q 002494 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (915)
Q Consensus 405 ~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~ 484 (915)
.........+.++|+|++++++ .+|...|+..... +. ...+.-...+|.+.+. +++-...++|.++.-
T Consensus 29 g~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 29 GSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYKN 96 (443)
T ss_dssp EE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEET
T ss_pred CCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEEc
Confidence 3345557889999999999985 4677778773322 21 1123456788998554 666776888999742
Q ss_pred CCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCC
Q 002494 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (915)
Q Consensus 485 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~ 564 (915)
-+.+....+.. ...+..+-. |.+|...+.+ .|.+||+.+...+..+... .|..+.|+++|++++..+
T Consensus 97 ~~~~~~k~i~~-~~~~~~If~-----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t---- 163 (443)
T PF04053_consen 97 FKNEVVKSIKL-PFSVEKIFG-----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT---- 163 (443)
T ss_dssp TEE-TT------SS-EEEEE------SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-----
T ss_pred CccccceEEcC-CcccceEEc-----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe----
Confidence 22222223331 223444422 4556665544 8999999998888777644 489999999999999886
Q ss_pred CCceEEEEECCCC-----------eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce--EEEEcCCCC
Q 002494 565 GESHLVEWNESEG-----------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGG 631 (915)
Q Consensus 565 ~~~~i~~wd~~~~-----------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~ 631 (915)
+..+++++.... .....+..... .|.+..|..+ .++-.+.. .++- +..|+. +..+. .
T Consensus 164 -~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~-~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld---~ 233 (443)
T PF04053_consen 164 -KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISE-RIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD---K 233 (443)
T ss_dssp -S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S---SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S---S
T ss_pred -CCeEEEEEecchhcccccccCchhceEEEEEecc-eeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC---C
Confidence 334777664422 02222222122 6888888765 44444444 6665 333432 23332 2
Q ss_pred CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 632 ~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
++.=+.+.+..+.+.....|+.|..+.+...
T Consensus 234 --~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 234 --PLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp ----EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred --ceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 5666777887788888889999988877643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0027 Score=72.10 Aligned_cols=275 Identities=10% Similarity=0.054 Sum_probs=154.2
Q ss_pred EEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeE--EEEEcCCCCEEEEEECCCeEEEEEecC
Q 002494 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN--RCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (915)
Q Consensus 362 l~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~spd~~~l~s~~~dg~i~vwd~~~ 439 (915)
++.++.++.|.-.|..+|+.+-. ....... ......+. .++.. ++..++.++.++.|.-+|.++
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~W~-------~~~~~~~------~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T 129 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVLWR-------YDPKLPA------DRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET 129 (488)
T ss_pred EEEeCCCCcEEEEECCCChhhce-------eCCCCCc------cccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC
Confidence 55677789999999999986643 2111000 00000000 01111 236777888899999999999
Q ss_pred CCceeeeEEeeccc---CCe-eEEEEecCCCeEEEEEEe---------CCCcEEEEEcCCCeeEEEecCCCCC-------
Q 002494 440 TGELRQHLEIDAHV---GGV-NDIAFAHPNKQLCIVTCG---------DDKMIKVWDVVAGRKQYTFEGHEAP------- 499 (915)
Q Consensus 440 ~~~~~~~~~~~~h~---~~v-~~~~~s~~~~~~~l~s~~---------~d~~i~vwd~~~~~~~~~~~~~~~~------- 499 (915)
|+.+-... ...+. ..+ ....+. + . .++.++ .++.+..+|..+|+.+..+......
T Consensus 130 G~~~W~~~-~~~~~~~~~~i~ssP~v~-~-~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~ 204 (488)
T cd00216 130 GKQVWKFG-NNDQVPPGYTMTGAPTIV-K-K--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTW 204 (488)
T ss_pred CCEeeeec-CCCCcCcceEecCCCEEE-C-C--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCC
Confidence 87664321 11110 001 112222 2 3 344443 4678999999999988776532110
Q ss_pred -------------EE-EEEeecCCCccEEEEEeCCC------------------eEEEEecCCCCceeEecCCCCcEE--
Q 002494 500 -------------VY-SVCPHHKESIQFIFSTAIDG------------------KIKAWLYDYLGSRVDYDAPGNWCT-- 545 (915)
Q Consensus 500 -------------v~-~i~~~~~~~~~~l~s~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~i~-- 545 (915)
++ ...+.+ .+..++.++.++ .+.-+|..+++..-.+........
T Consensus 205 ~~~~~~~~~~g~~vw~~pa~d~--~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~ 282 (488)
T cd00216 205 GPDRQMWGPGGGTSWASPTYDP--KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY 282 (488)
T ss_pred CCCcceecCCCCCccCCeeEeC--CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc
Confidence 10 112222 224677776554 788889988888776543211110
Q ss_pred ----EEEEC----CCCC---EEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEE--------
Q 002494 546 ----MMAYS----ADGT---RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-------- 606 (915)
Q Consensus 546 ----~~~~s----p~g~---~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-------- 606 (915)
...+. -+|. .++.++ .++.++..|.++|+.+....... ..++.+| ..++.+
T Consensus 283 ~~~s~p~~~~~~~~~g~~~~~V~~g~----~~G~l~ald~~tG~~~W~~~~~~----~~~~~~~--~~vyv~~~~~~~~~ 352 (488)
T cd00216 283 DGPNQPSLADIKPKDGKPVPAIVHAP----KNGFFYVLDRTTGKLISARPEVE----QPMAYDP--GLVYLGAFHIPLGL 352 (488)
T ss_pred ccCCCCeEEeccccCCCeeEEEEEEC----CCceEEEEECCCCcEeeEeEeec----cccccCC--ceEEEccccccccC
Confidence 00111 2333 344444 36779999999999887764321 1123344 233332
Q ss_pred ----------eCCCcEEEEeCCCCceEEEEcCCCCC------CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCcee
Q 002494 607 ----------GDEFQIKFWDMDNMNMLTTVDADGGL------PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRL 667 (915)
Q Consensus 607 ----------~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 667 (915)
..+|.+.-.|+.+|+.+.+....... .+...-.....+..+++++.||.++.+|..+|+.+
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCcee
Confidence 24678999999999988887654110 01111111124678889999999999999999443
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.013 Score=63.66 Aligned_cols=71 Identities=8% Similarity=0.164 Sum_probs=60.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 590 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
.+.+++++|+...++.|+.||.|.+||...+..... +. . -..+.++|+|+|.++++|+..|.+.+||+.-+
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka-~--~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KA-E--FIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-ee-c--ccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 789999999999999999999999999986633222 21 1 15678999999999999999999999999866
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.5e-06 Score=49.35 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHhh
Q 002494 6 RELVFLILQFLDEEKFKETVHKLEQES 32 (915)
Q Consensus 6 ~ev~rli~q~L~~~g~~~s~~~L~~ES 32 (915)
+++.+||.+||.++||.+||++|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 578999999999999999999999997
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00061 Score=74.50 Aligned_cols=196 Identities=11% Similarity=0.089 Sum_probs=115.6
Q ss_pred ccEEEEec-CCCCEEEEEEcCCCCeEEEEEeCC---CcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeE
Q 002494 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNV---GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (915)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~fspd~~~ll~~gs~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 412 (915)
+...+.+. ....+..-+|+|+++.+.+..-.. ..+.++++.+++..... ...+.-.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--------------------~~~g~~~ 241 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--------------------NFNGNNG 241 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee--------------------ccCCccC
Confidence 44444444 567788899999999765553323 35999999988654321 1222334
Q ss_pred EEEEcCCCCEEEEEEC-CC--eEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCc--EEEEEcCCC
Q 002494 413 RCVWGPDGLMLGVAFS-KH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--IKVWDVVAG 487 (915)
Q Consensus 413 ~~~~spd~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~--i~vwd~~~~ 487 (915)
..+|+|||++|+.+.. || .|.++|+.++.. . .+..-.+.-..-.|+|||+. ++++.+..|. |.+++...+
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~---~Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-P---RLTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-e---ecccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCC
Confidence 5689999999887654 45 467777777552 2 23333333447799999997 4555566665 555565544
Q ss_pred eeEEEecCCCCCEEEEEeecCCCccEEEEEeC-CCe--EEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 002494 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (915)
Q Consensus 488 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~ 561 (915)
.. ..+......-..-.|+|+ |.+++..+. +|. |.+.|+.+... ............-+|.++|+.+...+.
T Consensus 317 ~~-~riT~~~~~~~~p~~Spd--G~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 317 QV-TRLTFSGGGNSNPVWSPD--GDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ce-eEeeccCCCCcCccCCCC--CCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 43 333222222224556664 466666554 344 55666655543 222223333445678899998886653
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00068 Score=73.35 Aligned_cols=137 Identities=13% Similarity=0.119 Sum_probs=94.2
Q ss_pred eeeecCCCcccEEEEecCCCCEEEEEEcCCCCeEEEEE----eCCCc----EEEEEcCCCceecccceeeeecccCcccc
Q 002494 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVG----TNVGD----ISLWEVGSRERLAHKPFKVWDISAASMPL 399 (915)
Q Consensus 328 ~~~~~d~~~~~~~~~l~h~~~V~~v~fspd~~~ll~~g----s~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 399 (915)
.........-+++..........++.||-...+.+.+- +.+|. -.+|++..++... +.+-.
T Consensus 187 ~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqr---vsvts-------- 255 (545)
T PF11768_consen 187 HLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQR---VSVTS-------- 255 (545)
T ss_pred EEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeE---EEEEE--------
Confidence 33333333445566666667778999997555555542 23443 3456665543221 11111
Q ss_pred cccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcE
Q 002494 400 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (915)
Q Consensus 400 ~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i 479 (915)
-.....|.|++++|+.+.|+.|+.||.|.+||...+... .....-.++.++|+|+|. ++++|+..|.+
T Consensus 256 -----ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGel 323 (545)
T PF11768_consen 256 -----IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGEL 323 (545)
T ss_pred -----EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceE
Confidence 236778999999999999999999999999998775322 223445688999999999 89999999999
Q ss_pred EEEEcCCC
Q 002494 480 KVWDVVAG 487 (915)
Q Consensus 480 ~vwd~~~~ 487 (915)
.+||+.-+
T Consensus 324 Q~FD~ALs 331 (545)
T PF11768_consen 324 QCFDMALS 331 (545)
T ss_pred EEEEeecC
Confidence 99998744
|
|
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.3e-06 Score=62.12 Aligned_cols=52 Identities=31% Similarity=0.532 Sum_probs=42.4
Q ss_pred hHHHHHHHHcCCHHHHHHHHcCCCcccccccchhHHHHHHHHHHHHHHhccCH
Q 002494 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDR 90 (915)
Q Consensus 38 ~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~ 90 (915)
+..++++|+.|+|+.|++.+.......... ...+.|.|++|+|+||++.++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~-~~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLER-NSKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhcc-CCCchhHHHHHHHHHHHHcCCc
Confidence 678999999999999999999884432222 2349999999999999998764
|
Alpha-helical motif of unknown function. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00054 Score=76.11 Aligned_cols=184 Identities=9% Similarity=0.149 Sum_probs=130.3
Q ss_pred cCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCe
Q 002494 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (915)
Q Consensus 409 ~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~ 488 (915)
..+.|++++ ++.|+.|+-+|.|++++....- . ....|... ..+|. ++++|+.||+|.|-.+.+.+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~---~~~~~s~~------~~~Ge--y~asCS~DGkv~I~sl~~~~ 104 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--K---TNFDHSSS------ILEGE--YVASCSDDGKVVIGSLFTDD 104 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc--c---cccccccc------ccCCc--eEEEecCCCcEEEeeccCCc
Confidence 456666665 6799999999999999977532 1 22234333 55777 89999999999999998888
Q ss_pred eEEEecCCCCCEEEEEeecC---CCccEEEEEeCCCeEEEEecCCC--CceeEecCCCCcEEEEEECCCCCEEEEEeecC
Q 002494 489 KQYTFEGHEAPVYSVCPHHK---ESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (915)
Q Consensus 489 ~~~~~~~~~~~v~~i~~~~~---~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~ 563 (915)
...++. ...++.+++++|+ ...+.+++|+.-| +.++.-+-. ..........++|.++.|. |+++|.+.
T Consensus 105 ~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan--- 177 (846)
T KOG2066|consen 105 EITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN--- 177 (846)
T ss_pred cceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec---
Confidence 777665 5678999999987 2346799999988 777643221 2222445567799999995 77888876
Q ss_pred CCCceEEEEECCCCeeEEEecCCCCC-----ceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 002494 564 EGESHLVEWNESEGAIKRTYSGFRKR-----SLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (915)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 618 (915)
|--|++||..+++.+..++..... .-..+.|.++.+ |+.|-.| +|+|..++
T Consensus 178 --d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 178 --DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGD-SVKICSIK 233 (846)
T ss_pred --CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCC-eEEEEEEe
Confidence 334999999998888776654431 223467776544 5555444 78888887
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0056 Score=61.45 Aligned_cols=191 Identities=9% Similarity=0.120 Sum_probs=110.3
Q ss_pred CCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEE
Q 002494 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (915)
Q Consensus 346 ~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s 425 (915)
...+..++|+|+++.++++....+.|...+.+ |+.++... +.+ .+....+++..++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEEE
Confidence 44699999999988888888888999888864 66664322 122 356778889888877776
Q ss_pred EECCCeEEEEEecCCCc---eee--eEEee---cccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCC---CeeEEEe-
Q 002494 426 AFSKHIVHLYTYNPTGE---LRQ--HLEID---AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRKQYTF- 493 (915)
Q Consensus 426 ~~~dg~i~vwd~~~~~~---~~~--~~~~~---~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~---~~~~~~~- 493 (915)
.-.++.+.++++..... ... ...+. .++..+-.++|++.++. |+.+-...-..+|.+.. ...+...
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeecc
Confidence 66689999999844321 111 11111 24567999999999885 44555555666666543 2111111
Q ss_pred -------cCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCC---------CcEEEEEECCCCCEEE
Q 002494 494 -------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLF 557 (915)
Q Consensus 494 -------~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~sp~g~~l~ 557 (915)
...-..+.+++++|. .+++++.+..+..|..+| ..++....+.... ...-.|+|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 123345788899887 557888888899999998 4444444333222 2578899999997666
Q ss_pred EE
Q 002494 558 SC 559 (915)
Q Consensus 558 ~~ 559 (915)
++
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 54
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.077 Score=61.15 Aligned_cols=382 Identities=12% Similarity=0.056 Sum_probs=201.3
Q ss_pred CCCCEEEEEEcCC--CCe---EEEEEeCCCcEEEEEcC-CCceecccceeeeecccCcccccccccCCCccCeEEEEEcC
Q 002494 345 QGSNVMSMDFHPQ--QQT---ILLVGTNVGDISLWEVG-SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (915)
Q Consensus 345 h~~~V~~v~fspd--~~~---ll~~gs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 418 (915)
....|.|+.++|- ++. ++++|..+..+.+.-.. +...+..... + ...-...|.-..+--
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l-----~----------~~~iPRSIl~~~~e~ 593 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL-----S----------GEIIPRSILLTTFEG 593 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc-----C----------CCccchheeeEEeec
Confidence 3578999999975 444 88999877766554433 2222211000 0 011233455666767
Q ss_pred CCCEEEEEECCCeEEEEEecCCCcee-eeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCC
Q 002494 419 DGLMLGVAFSKHIVHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (915)
Q Consensus 419 d~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 497 (915)
|..+|.++..||.+..+.+..+.... ......--..++.--.|+..+.. .+++ ..|+-..+|. .+++.+.+--.-
T Consensus 594 d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t-~vfa-~sdrP~viY~-~n~kLv~spls~- 669 (1096)
T KOG1897|consen 594 DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRT-AVFA-LSDRPTVIYS-SNGKLVYSPLSL- 669 (1096)
T ss_pred cceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCce-EEEE-eCCCCEEEEe-cCCcEEEeccch-
Confidence 78999999999998877665433211 11111112346666677777665 4444 4466666776 445544332111
Q ss_pred CCEEEEE-eecCCCccEEEEEeCCCeEEEEecCCCCceeEe-cCCCCcEEEEEECCCCCEEEEEeecC----------CC
Q 002494 498 APVYSVC-PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSK----------EG 565 (915)
Q Consensus 498 ~~v~~i~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~sp~g~~l~~~~~~~----------~~ 565 (915)
..+..+| |+.+.-+..++++. .+.+++.-++.-+..... -.-......+++.+....+++.+.-. ..
T Consensus 670 kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~ 748 (1096)
T KOG1897|consen 670 KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYE 748 (1096)
T ss_pred HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcce
Confidence 1122222 32222223344443 445666655543332211 12233455667766444444333110 01
Q ss_pred CceEEEEECCCCeeEEEecCCCCC---ceEEEEEcCC-CCEEEEEe----------CCCcEEEEeCCCCceEEEEcCCCC
Q 002494 566 ESHLVEWNESEGAIKRTYSGFRKR---SLGVVQFDTT-RNRFLAAG----------DEFQIKFWDMDNMNMLTTVDADGG 631 (915)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~---~v~~~~~sp~-~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~ 631 (915)
-..++++|..+-+.+...+-...+ .+.++.|..| +.++++|. ..|.|.++.+..++.+.....+.-
T Consensus 749 ~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v 828 (1096)
T KOG1897|consen 749 VSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV 828 (1096)
T ss_pred EEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee
Confidence 234777887776665544433322 3445568777 66777765 357888888877444443332221
Q ss_pred CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCccc
Q 002494 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLE 711 (915)
Q Consensus 632 ~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 711 (915)
.+.+.++..- +|+++|.- +..|++|+..+. +.++.-..+...+..+
T Consensus 829 ~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~-~eLr~e~~~~~~~~aL------------------------------ 874 (1096)
T KOG1897|consen 829 KGAVYALVEF-NGKLLAGI--NQSVRLYEWTTE-RELRIECNISNPIIAL------------------------------ 874 (1096)
T ss_pred ccceeehhhh-CCeEEEec--CcEEEEEEcccc-ceehhhhcccCCeEEE------------------------------
Confidence 2234333221 47766654 467999999887 3344433333322211
Q ss_pred CCCCCCCCcccccccCCCceeccCCceeeccCC-CceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEe
Q 002494 712 RPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL 790 (915)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~ 790 (915)
.....|..+++|+- +++.+-.....+ +. +. .+....+...++++.+-.+.. .+.+
T Consensus 875 -------------------~l~v~gdeI~VgDlm~Sitll~y~~~e-g~-f~--evArD~~p~Wmtaveil~~d~-ylga 930 (1096)
T KOG1897|consen 875 -------------------DLQVKGDEIAVGDLMRSITLLQYKGDE-GN-FE--EVARDYNPNWMTAVEILDDDT-YLGA 930 (1096)
T ss_pred -------------------EEEecCcEEEEeeccceEEEEEEeccC-Cc-eE--EeehhhCccceeeEEEecCce-EEee
Confidence 23345667777777 777665554211 11 11 222233677888888876665 3444
Q ss_pred eccceeEEeecccc
Q 002494 791 ASNAVHKLWKWQRT 804 (915)
Q Consensus 791 ~~dg~v~iW~l~~~ 804 (915)
-.+|.+++-..+..
T Consensus 931 e~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 931 ENSGNLFTVRKDSD 944 (1096)
T ss_pred cccccEEEEEecCC
Confidence 55777777766653
|
|
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.6e-05 Score=52.53 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhhcCHHHHHHHHHHhhCCC
Q 002494 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (915)
Q Consensus 4 ~~~ev~rli~q~L~~~g~~~s~~~L~~ESg~~ 35 (915)
.++++.|+|+|||...||..|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999975
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0064 Score=69.04 Aligned_cols=243 Identities=10% Similarity=0.071 Sum_probs=138.3
Q ss_pred EEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC--CCCEEEEEE---------CCC
Q 002494 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGVAF---------SKH 430 (915)
Q Consensus 362 l~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--d~~~l~s~~---------~dg 430 (915)
++.++.+|.|.-+|.++|+.+- ...... +...-..+.-+| .+..++.++ .++
T Consensus 113 V~v~~~~g~v~AlD~~TG~~~W-------~~~~~~----------~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g 175 (488)
T cd00216 113 VFFGTFDGRLVALDAETGKQVW-------KFGNND----------QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRG 175 (488)
T ss_pred EEEecCCCeEEEEECCCCCEee-------eecCCC----------CcCcceEecCCCEEECCEEEEeccccccccCCCCc
Confidence 5667889999999999998663 322111 000000011111 123444443 367
Q ss_pred eEEEEEecCCCceeeeEEeecc----------------c-CCe-eEEEEecCCCeEEEEEEeCCC---------------
Q 002494 431 IVHLYTYNPTGELRQHLEIDAH----------------V-GGV-NDIAFAHPNKQLCIVTCGDDK--------------- 477 (915)
Q Consensus 431 ~i~vwd~~~~~~~~~~~~~~~h----------------~-~~v-~~~~~s~~~~~~~l~s~~~d~--------------- 477 (915)
.+.-+|..+|+.+-........ . ..+ ...++.+.+. .++.++.++
T Consensus 176 ~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g--~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 176 ALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN--LVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred EEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC--EEEEECCCCCCCccCCccCCCCCC
Confidence 8888899888765432111000 0 011 1234444455 466665554
Q ss_pred ---cEEEEEcCCCeeEEEecCCCCCEEE------EEeec--CCCc---cEEEEEeCCCeEEEEecCCCCceeEecCCCCc
Q 002494 478 ---MIKVWDVVAGRKQYTFEGHEAPVYS------VCPHH--KESI---QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW 543 (915)
Q Consensus 478 ---~i~vwd~~~~~~~~~~~~~~~~v~~------i~~~~--~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 543 (915)
.+.-+|..+|+.+..++.-...... ..+.. .-++ ..++.++.+|.+...|.++++.+.......
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-- 331 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE-- 331 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--
Confidence 7999999999988776421111110 01110 0122 267888899999999999988776543221
Q ss_pred EEEEEECCCCCEEEEEeec--------------CCCCceEEEEECCCCeeEEEecCCCC-------Cce--EEEEEcCCC
Q 002494 544 CTMMAYSADGTRLFSCGTS--------------KEGESHLVEWNESEGAIKRTYSGFRK-------RSL--GVVQFDTTR 600 (915)
Q Consensus 544 i~~~~~sp~g~~l~~~~~~--------------~~~~~~i~~wd~~~~~~~~~~~~~~~-------~~v--~~~~~sp~~ 600 (915)
..++.+| ..++..... ...++.+.-.|..+|+.+-+...... ... ..+. ..+
T Consensus 332 -~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g 406 (488)
T cd00216 332 -QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAG 406 (488)
T ss_pred -cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecC
Confidence 1233344 233332110 11356788999999998877654310 011 1122 245
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEcCCC
Q 002494 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630 (915)
Q Consensus 601 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (915)
..+++++.||.|+.+|.++|+.+.+.+...
T Consensus 407 ~~v~~g~~dG~l~ald~~tG~~lW~~~~~~ 436 (488)
T cd00216 407 NLVFAGAADGYFRAFDATTGKELWKFRTPS 436 (488)
T ss_pred CeEEEECCCCeEEEEECCCCceeeEEECCC
Confidence 788889999999999999999999887643
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0098 Score=64.52 Aligned_cols=253 Identities=15% Similarity=0.197 Sum_probs=131.8
Q ss_pred CEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceec------c------------cceeeeecccCc------ccccccc
Q 002494 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA------H------------KPFKVWDISAAS------MPLQNAL 403 (915)
Q Consensus 348 ~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~------~------------~~~~~~~~~~~~------~~~~~~~ 403 (915)
.|+.+.|+++... |++|...|.|.||.+...+.-. . ..-.+-|+..-. .-.+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5899999999875 7889999999999886543221 0 011223332211 1122234
Q ss_pred cCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeec------ccCCeeEEEEec-----CC-CeEEEE
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDA------HVGGVNDIAFAH-----PN-KQLCIV 471 (915)
Q Consensus 404 ~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------h~~~v~~~~~s~-----~~-~~~~l~ 471 (915)
+....++|++++.| |=-++|.|..+|.+.|.|+++...+... .+.. ....|+++.|+- |+ ..++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 55568999999997 5569999999999999999876655432 2222 234688888862 22 124788
Q ss_pred EEeCCCcEEEEEcC-C--Cee----EEEecCCCCCEEEEEeecCCCc-------------------cEEEEEeCCCeEEE
Q 002494 472 TCGDDKMIKVWDVV-A--GRK----QYTFEGHEAPVYSVCPHHKESI-------------------QFIFSTAIDGKIKA 525 (915)
Q Consensus 472 s~~~d~~i~vwd~~-~--~~~----~~~~~~~~~~v~~i~~~~~~~~-------------------~~l~s~~~dg~i~i 525 (915)
.|...|.+.+|.+. . +.. ......+.++|..+..-....| .-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999765 1 211 1122246677766653211110 12444455778999
Q ss_pred EecCCCCceeEecCCCCcEEEEEEC-----CCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCC---CceEEEEEc
Q 002494 526 WLYDYLGSRVDYDAPGNWCTMMAYS-----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK---RSLGVVQFD 597 (915)
Q Consensus 526 wd~~~~~~~~~~~~~~~~i~~~~~s-----p~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~s 597 (915)
+..-+.+...+.......+..+.+- ..+..|++-. .+|.++++.+..-+.+..+..... ..+....++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE----CCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887766555444222233344442 2344444444 478899999998888777665321 123345667
Q ss_pred CCCCEEEEEe
Q 002494 598 TTRNRFLAAG 607 (915)
Q Consensus 598 p~~~~l~s~~ 607 (915)
++|..++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 7777555444
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0099 Score=64.48 Aligned_cols=242 Identities=12% Similarity=0.074 Sum_probs=137.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEecCCCcee----------------------------------------eeEEe
Q 002494 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR----------------------------------------QHLEI 449 (915)
Q Consensus 410 ~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~----------------------------------------~~~~~ 449 (915)
.|+++.|+++..-|++|...|.|.||.+...+... ....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999999999999999999998765432110 11122
Q ss_pred ecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEe--cC------CCCCEEEEEee---cCCCc---cEEE
Q 002494 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EG------HEAPVYSVCPH---HKESI---QFIF 515 (915)
Q Consensus 450 ~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~------~~~~v~~i~~~---~~~~~---~~l~ 515 (915)
....++|++++.|.-| +++.|..+|.+.|.|++....+..- .. ....++++.|. ..+++ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3346789999998655 7999999999999999887776652 22 23457777775 23333 5788
Q ss_pred EEeCCCeEEEEecCC-CC--cee----EecCCCCcEEEEE-ECCC---------------------CCEEEEEeecCCCC
Q 002494 516 STAIDGKIKAWLYDY-LG--SRV----DYDAPGNWCTMMA-YSAD---------------------GTRLFSCGTSKEGE 566 (915)
Q Consensus 516 s~~~dg~i~iwd~~~-~~--~~~----~~~~~~~~i~~~~-~sp~---------------------g~~l~~~~~~~~~~ 566 (915)
+|...|.+.+|.+.- .. ... ....+...+..+. ++.+ ..++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 999999999997741 11 111 1112334444443 3221 11344443 4
Q ss_pred ceEEEEECCCCeeEEEecCCCCCceEEEEEc-----CCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCC--CCCcceEE
Q 002494 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFD-----TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRLR 639 (915)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s-----p~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 639 (915)
..++++...+.+...+.....- ....+.+- ..+..|++-..+|.+++|.+..-+.+..+..... ...+...+
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 5599999888777665542211 23334442 3456788888999999999999999888876421 12355678
Q ss_pred EcCCCCEEEEEeCCCcEEEEEc
Q 002494 640 FNKEGSLLAVTTSDNGIKILAN 661 (915)
Q Consensus 640 ~s~~~~~l~s~~~dg~i~iwd~ 661 (915)
++++|..++-.+. ..+.++.+
T Consensus 314 is~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SS-SEEEEEEE
T ss_pred ECCCCCEEEEeCc-ccEEEEEE
Confidence 8888887766654 34444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.066 Score=58.59 Aligned_cols=266 Identities=13% Similarity=0.123 Sum_probs=167.5
Q ss_pred cccEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEE
Q 002494 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (915)
Q Consensus 336 ~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 415 (915)
+......+.-......+...|++..+.++-.....+...+......... .......-..++
T Consensus 20 ~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~-------------------~~~g~~~p~~i~ 80 (381)
T COG3391 20 TNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS-------------------LSVGGVYPAGVA 80 (381)
T ss_pred ccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeee-------------------ccCCCcccccee
Confidence 3334444443446778888888865555544333444444441111100 000113445678
Q ss_pred EcCCCCEE-EEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEe--CCCcEEEEEcCCCeeEEE
Q 002494 416 WGPDGLML-GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYT 492 (915)
Q Consensus 416 ~spd~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~ 492 (915)
.+++++.+ ++...++.|.+.|..+......... +. ....++++++++. +.++-. .++++.+.|..+++.+.+
T Consensus 81 v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G~--~P~~~~~~~~~~~-vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 81 VNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV--GL--GPVGLAVDPDGKY-VYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred eCCCCCeEEEecCCCCeEEEEcCcccceeeEeee--cc--CCceEEECCCCCE-EEEEecccCCceEEEEeCCCCeEEEE
Confidence 88888854 4455568999999777554442211 22 6778999999986 333333 478999999888888877
Q ss_pred ecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCcee-E---ecCCCCcEEEEEECCCCCEEEEEeecCCCCce
Q 002494 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-D---YDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (915)
Q Consensus 493 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~---~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~ 568 (915)
......+ ..+++.|++. ..+++-..++.+.+.|........ . ..........+.++|+|+++.+.... +.++.
T Consensus 156 ~~vG~~P-~~~a~~p~g~-~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~~~~ 232 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGN-KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SGSNN 232 (381)
T ss_pred EecCCCc-ceEEECCCCC-eEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CCCce
Confidence 5544444 7788877542 244444578999999966544332 0 11122344678999999987766532 22468
Q ss_pred EEEEECCCCeeEEE-ecCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceEEEEcCC
Q 002494 569 LVEWNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDAD 629 (915)
Q Consensus 569 i~~wd~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~ 629 (915)
+...|..++..... +..... ....+..+|+|+.+.+.. ..+.+.+.|..+..........
T Consensus 233 v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred EEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 99999988877665 333332 355688999999988874 4588999999988777766543
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0062 Score=64.31 Aligned_cols=250 Identities=14% Similarity=0.077 Sum_probs=117.5
Q ss_pred cEEEEEe-CCCeEEEEecCCCC-cee---EecC---C----CCcEEEEEECCCCCEEEEEeecC--CCCceEEEEECCCC
Q 002494 512 QFIFSTA-IDGKIKAWLYDYLG-SRV---DYDA---P----GNWCTMMAYSADGTRLFSCGTSK--EGESHLVEWNESEG 577 (915)
Q Consensus 512 ~~l~s~~-~dg~i~iwd~~~~~-~~~---~~~~---~----~~~i~~~~~sp~g~~l~~~~~~~--~~~~~i~~wd~~~~ 577 (915)
++|+..+ ..+.|.+.|+.+.. ... .+.. . -.....+..-|+|+.++++-.+. ++.+-+.+.|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 5666666 67789999987432 211 1111 0 01234455568999888766544 45567889998888
Q ss_pred eeEEEecCCCC--CceEEEEEcCCCCEEEEEe--------------------CCCcEEEEeCCCCceEEEEcCCCCCCCc
Q 002494 578 AIKRTYSGFRK--RSLGVVQFDTTRNRFLAAG--------------------DEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (915)
Q Consensus 578 ~~~~~~~~~~~--~~v~~~~~sp~~~~l~s~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (915)
+.......... ..-..+.|.|..+.++++. ...++.+||+.+.+.++++.........
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p 247 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP 247 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence 77776655332 2446688899989888865 2347999999999999999875432234
Q ss_pred ceEEEc--CCCCEEEEEe-CCCcEEEEEc-CCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccCccccccCCccc
Q 002494 636 PRLRFN--KEGSLLAVTT-SDNGIKILAN-SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLE 711 (915)
Q Consensus 636 ~~v~~s--~~~~~l~s~~-~dg~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 711 (915)
..+.|. |+..+=++++ -.++|..|-- ..+ + .+. ..|..+. +..+.
T Consensus 248 LEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g-~-W~a-----~kVi~ip------------------------~~~v~ 296 (461)
T PF05694_consen 248 LEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG-E-WAA-----EKVIDIP------------------------AKKVE 296 (461)
T ss_dssp EEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT-E-EEE-----EEEEEE--------------------------EE--
T ss_pred EEEEecCCCCccceEEEEeccceEEEEEEcCCC-C-eee-----eEEEECC------------------------CcccC
Confidence 456654 4444443333 3444544433 333 1 000 0111110 00112
Q ss_pred CCCCCCCCcccccccC--CCceeccCCceeeccCC--CceeEeecCCCCCccceeEeecCCcc------------CCCce
Q 002494 712 RPDRGPPAVSISSLGT--IDGSRLVDVKPRVAEDV--DKIKSWRIPDISDPSQIKALRLPDSI------------AASKV 775 (915)
Q Consensus 712 ~~~~~~~~~~~~~~~~--~~~~~s~dg~~la~~~~--~~v~iw~~~~~~~~~~~~~~~~~~~~------------h~~~I 775 (915)
.|.+..-.+....+++ +++.+|.|.++|.++.- |.+|.||+++...+...-++.+-|.. -.+..
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP 376 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP 376 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence 2222111111122233 67889999999999877 99999999998777777665554421 11223
Q ss_pred EEEEEecCCceEEEeec
Q 002494 776 VRLIYTNSGLSLLALAS 792 (915)
Q Consensus 776 ~~l~~s~d~~~l~~~~~ 792 (915)
.-+..|-||+.|...++
T Consensus 377 qMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 377 QMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp --EEE-TTSSEEEEE--
T ss_pred CeEEEccCCeEEEEEee
Confidence 56788899998855543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.13 Score=58.63 Aligned_cols=195 Identities=12% Similarity=0.045 Sum_probs=115.0
Q ss_pred CCEEEEEECCCeEEEEEecCCCceeeeEEeeccc--CCe-------eEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeE
Q 002494 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV--GGV-------NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (915)
Q Consensus 420 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~--~~v-------~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 490 (915)
+..+.+++.++.|.-.|..+|+.+-+... .... ... ..+++. +. .++.++.|+.+.-.|..+|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~-~~~~~~~~~~~~~~~~rg~av~--~~--~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDP-KLPDDVIPVMCCDVVNRGVALY--DG--KVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecC-CCCcccccccccccccccceEE--CC--EEEEEcCCCEEEEEECCCCCEE
Confidence 44666677778888888888876543211 1100 000 112222 23 3667788999999999999988
Q ss_pred EEecCC--C--CCEEE-EEeecCCCccEEEEEe------CCCeEEEEecCCCCceeEecCCC------------------
Q 002494 491 YTFEGH--E--APVYS-VCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPG------------------ 541 (915)
Q Consensus 491 ~~~~~~--~--~~v~~-i~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~------------------ 541 (915)
...... . ..+.+ ..+. + ..++.+. .+|.|..+|.++++.+-.+....
T Consensus 144 W~~~~~~~~~~~~~tssP~v~---~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~ 219 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVV---K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPG 219 (527)
T ss_pred eecccccccccccccCCcEEE---C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccc
Confidence 765421 1 11111 1111 2 2445443 26889999998877665432210
Q ss_pred -------------CcE-EEEEECCCCCEEEEEeec--------CCCCc----eEEEEECCCCeeEEEecCCCCC------
Q 002494 542 -------------NWC-TMMAYSADGTRLFSCGTS--------KEGES----HLVEWNESEGAIKRTYSGFRKR------ 589 (915)
Q Consensus 542 -------------~~i-~~~~~sp~g~~l~~~~~~--------~~~~~----~i~~wd~~~~~~~~~~~~~~~~------ 589 (915)
..+ ..+++.|...+++.+... +.+++ .|.-.|+++|+..-.|+.....
T Consensus 220 ~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~ 299 (527)
T TIGR03075 220 AKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDG 299 (527)
T ss_pred cCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccC
Confidence 011 234677777777665522 11222 6888899999998887653221
Q ss_pred --ceEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCceE
Q 002494 590 --SLGVVQFDTTRN---RFLAAGDEFQIKFWDMDNMNML 623 (915)
Q Consensus 590 --~v~~~~~sp~~~---~l~s~~~dg~i~iwd~~~~~~~ 623 (915)
...-+.+..+|+ .++.+..+|.+++.|..+|+.+
T Consensus 300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 300 VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 111233334665 6778899999999999999886
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.1e-05 Score=86.47 Aligned_cols=206 Identities=15% Similarity=0.195 Sum_probs=131.7
Q ss_pred CCCCEEEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC-CCCE
Q 002494 345 QGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLM 422 (915)
Q Consensus 345 h~~~V~~v~fspd~~-~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-d~~~ 422 (915)
....+.|++++-+.+ -++++|..+|.|.+-.+....-- ......++....++++|++ |.+.
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 345678888765543 58899999999999887654211 1112456888999999999 6677
Q ss_pred EEEEE----CCCeEEEEEecCCCc-eeeeEEeec-ccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCC
Q 002494 423 LGVAF----SKHIVHLYTYNPTGE-LRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (915)
Q Consensus 423 l~s~~----~dg~i~vwd~~~~~~-~~~~~~~~~-h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 496 (915)
||.|- .|..+.|||+.++-. .+....+.+ -.....+++|..+.+ ++.+|.....++++|++...... ..-.
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~-~svn 194 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSV-SSVN 194 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhh-hhhh
Confidence 77773 366799999988611 111112222 334566889987777 78888888899999988432111 1112
Q ss_pred CCCEEEEEeecCCCccEEEEEeCCCeEEEEe-cCCCCceeEecCC-----CCcEEEEEECCCCC-EEEEEeecCCCCceE
Q 002494 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWL-YDYLGSRVDYDAP-----GNWCTMMAYSADGT-RLFSCGTSKEGESHL 569 (915)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~-----~~~i~~~~~sp~g~-~l~~~~~~~~~~~~i 569 (915)
...+..+.+.|-. ++++++-. ||.|.+|| .++.+.......+ ...+..++|+|... .+++... ..++|
T Consensus 195 Tk~vqG~tVdp~~-~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tI 269 (783)
T KOG1008|consen 195 TKYVQGITVDPFS-PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITI 269 (783)
T ss_pred hhhcccceecCCC-CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceE
Confidence 3345556666632 24665554 99999999 4443333222111 12588999999654 3444443 26789
Q ss_pred EEEECC
Q 002494 570 VEWNES 575 (915)
Q Consensus 570 ~~wd~~ 575 (915)
+++|+.
T Consensus 270 rlydi~ 275 (783)
T KOG1008|consen 270 RLYDIC 275 (783)
T ss_pred EEeccc
Confidence 999975
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0037 Score=68.71 Aligned_cols=218 Identities=14% Similarity=0.120 Sum_probs=109.6
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
.......+.++|+|+.+++ +.+|...|+........ ..+.-...+|.+. ..+|
T Consensus 31 ~~~~p~~ls~npngr~v~V--~g~geY~iyt~~~~r~k------------------------~~G~g~~~vw~~~-n~yA 83 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV--CGDGEYEIYTALAWRNK------------------------AFGSGLSFVWSSR-NRYA 83 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE--EETTEEEEEETTTTEEE------------------------EEEE-SEEEE-TS-SEEE
T ss_pred CCcCCeeEEECCCCCEEEE--EcCCEEEEEEccCCccc------------------------ccCceeEEEEecC-ccEE
Confidence 4556889999999996555 34899999884433211 2334456789984 4577
Q ss_pred EEECCCeEEEEE-ecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEE
Q 002494 425 VAFSKHIVHLYT-YNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (915)
Q Consensus 425 s~~~dg~i~vwd-~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i 503 (915)
+-..+++|.|+. ++. ...+.. .+ ...+..+-. |. +|...+ ++.|.+||+.+++.+..+... +|..+
T Consensus 84 v~~~~~~I~I~kn~~~-~~~k~i-~~---~~~~~~If~---G~--LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V 150 (443)
T PF04053_consen 84 VLESSSTIKIYKNFKN-EVVKSI-KL---PFSVEKIFG---GN--LLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYV 150 (443)
T ss_dssp EE-TTS-EEEEETTEE--TT---------SS-EEEEE----SS--SEEEEE-TTEEEEE-TTT--EEEEESS---E-EEE
T ss_pred EEECCCeEEEEEcCcc-ccceEE-cC---CcccceEEc---Cc--EEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEE
Confidence 777788899963 332 221111 11 112333322 66 455544 448999999999999998733 38899
Q ss_pred EeecCCCccEEEEEeCCCeEEEEecCCC-----------CceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEE
Q 002494 504 CPHHKESIQFIFSTAIDGKIKAWLYDYL-----------GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (915)
Q Consensus 504 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----------~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~w 572 (915)
.|+++ |++++..+.+ .+.+++.+.. ........-...|.+.+|..+ .++..+ .+.++.
T Consensus 151 ~Ws~~--g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT-----~~~lkY- 219 (443)
T PF04053_consen 151 IWSDD--GELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT-----SNHLKY- 219 (443)
T ss_dssp EE-TT--SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE------TTEEEE-
T ss_pred EEECC--CCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc-----CCeEEE-
Confidence 99875 4677777655 5666654432 011222212456778888766 444333 224554
Q ss_pred ECCCCee--EEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 002494 573 NESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (915)
Q Consensus 573 d~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 618 (915)
+-.|+. +..+ .. ++.-+...|..+.++....|+.+..+.+.
T Consensus 220 -l~~Ge~~~i~~l---d~-~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 220 -LVNGETGIIAHL---DK-PLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp -EETTEEEEEEE----SS---EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred -EEcCCcceEEEc---CC-ceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 233332 2222 22 56667777766777777777777777665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.06 Score=58.90 Aligned_cols=248 Identities=14% Similarity=0.127 Sum_probs=158.8
Q ss_pred CeEEEEEcCCCCEEEEEEC-CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCe
Q 002494 410 SVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (915)
Q Consensus 410 ~v~~~~~spd~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~ 488 (915)
....+...+++..+..... ...+...+.. ...... ....-...-..++.++.+.+ .+++...++.|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 4556788888865554432 2234444433 111111 11111134557788899887 56666667899999987777
Q ss_pred eEEEecCCCCCEEEEEeecCCCccEEEEEeC---CCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCC
Q 002494 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (915)
Q Consensus 489 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~ 565 (915)
......... ....+++++++ +.+..+.. ++.+.+.|..+............+ ..++++|+|+.++.+.. .
T Consensus 108 ~~~~~~vG~-~P~~~~~~~~~--~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~---~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDPDG--KYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS---D 180 (381)
T ss_pred eeeEeeecc-CCceEEECCCC--CEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec---C
Confidence 666554322 45567787764 34444433 688888888877766664333334 88999999998887763 4
Q ss_pred CceEEEEECCCCeeEE-E----ecCCCCCceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEEcCCCCCCCcce
Q 002494 566 ESHLVEWNESEGAIKR-T----YSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVDADGGLPASPR 637 (915)
Q Consensus 566 ~~~i~~wd~~~~~~~~-~----~~~~~~~~v~~~~~sp~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (915)
++.+.+.|.......+ . ..... .-..+.++|+|+.+++.... +.+...|..++.....-...... ....
T Consensus 181 ~~~v~vi~~~~~~v~~~~~~~~~~~~~--~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~ 257 (381)
T COG3391 181 DNTVSVIDTSGNSVVRGSVGSLVGVGT--GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRG 257 (381)
T ss_pred CCeEEEEeCCCcceeccccccccccCC--CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCc
Confidence 7889999977665553 1 11111 34568899999977765433 68999999988777652222222 3467
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEEcCCCceeeeecc
Q 002494 638 LRFNKEGSLLAVTTS-DNGIKILANSDGVRLLRMLE 672 (915)
Q Consensus 638 v~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~ 672 (915)
+..+|+|+.+.+... .+.+.+.|..+. .......
T Consensus 258 v~~~p~g~~~yv~~~~~~~V~vid~~~~-~v~~~~~ 292 (381)
T COG3391 258 VAVDPAGKAAYVANSQGGTVSVIDGATD-RVVKTGP 292 (381)
T ss_pred eeECCCCCEEEEEecCCCeEEEEeCCCC-ceeeeec
Confidence 899999999988854 488888888876 4444433
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.053 Score=61.85 Aligned_cols=285 Identities=10% Similarity=0.057 Sum_probs=151.9
Q ss_pred EEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCC
Q 002494 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT 440 (915)
Q Consensus 361 ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~ 440 (915)
.+++++.++.|.-.|..+|+.+-+ ........... .......-..+++ .+..++.++.|+.+.-.|..+|
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~-------~~~~~~~~~~~-~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TG 140 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWK-------YDPKLPDDVIP-VMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTG 140 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeE-------ecCCCCccccc-ccccccccccceE--ECCEEEEEcCCCEEEEEECCCC
Confidence 356677788999999999986643 22110000000 0000000001122 2346777888999999999998
Q ss_pred CceeeeEEeecccC--CeeE-EEEecCCCeEEEEEEe------CCCcEEEEEcCCCeeEEEecCCCC-------------
Q 002494 441 GELRQHLEIDAHVG--GVND-IAFAHPNKQLCIVTCG------DDKMIKVWDVVAGRKQYTFEGHEA------------- 498 (915)
Q Consensus 441 ~~~~~~~~~~~h~~--~v~~-~~~s~~~~~~~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~------------- 498 (915)
+.+-.... ..+.. .+.+ .... ++. ++.+. .+|.|.-+|..+|+.+..+..-..
T Consensus 141 k~~W~~~~-~~~~~~~~~tssP~v~-~g~---Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~ 215 (527)
T TIGR03075 141 KVVWSKKN-GDYKAGYTITAAPLVV-KGK---VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVG 215 (527)
T ss_pred CEEeeccc-ccccccccccCCcEEE-CCE---EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccc
Confidence 87653221 11111 1211 1111 333 34432 368999999999988766532110
Q ss_pred ------------------CEE-EEEeecCCCccEEEEEeC-----CC-----------eEEEEecCCCCceeEecCCCCc
Q 002494 499 ------------------PVY-SVCPHHKESIQFIFSTAI-----DG-----------KIKAWLYDYLGSRVDYDAPGNW 543 (915)
Q Consensus 499 ------------------~v~-~i~~~~~~~~~~l~s~~~-----dg-----------~i~iwd~~~~~~~~~~~~~~~~ 543 (915)
.++ .+++.+.. .+++.+.. ++ .|.-.|+++++..-.++...+.
T Consensus 216 ~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~--~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D 293 (527)
T TIGR03075 216 GEPGAKTWPGDAWKTGGGATWGTGSYDPET--NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHD 293 (527)
T ss_pred cccccCCCCCCccccCCCCccCceeEcCCC--CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCC
Confidence 111 11333322 34444331 12 5666788887776655442221
Q ss_pred E---------EEEEECCCCC---EEEEEeecCCCCceEEEEECCCCeeEEE--------ec---C-CCCC----------
Q 002494 544 C---------TMMAYSADGT---RLFSCGTSKEGESHLVEWNESEGAIKRT--------YS---G-FRKR---------- 589 (915)
Q Consensus 544 i---------~~~~~sp~g~---~l~~~~~~~~~~~~i~~wd~~~~~~~~~--------~~---~-~~~~---------- 589 (915)
+ .-+....+|+ .++.+. +++.+++.|.++|+.+.. .. . ....
T Consensus 294 ~wD~d~~~~p~l~d~~~~G~~~~~v~~~~----K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~ 369 (527)
T TIGR03075 294 EWDYDGVNEMILFDLKKDGKPRKLLAHAD----RNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSA 369 (527)
T ss_pred CccccCCCCcEEEEeccCCcEEEEEEEeC----CCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcC
Confidence 1 1222334666 334443 478899999999988621 10 0 0000
Q ss_pred ------------------ceEEEEEcCCCCEEEEEeCC---------------------------------CcEEEEeCC
Q 002494 590 ------------------SLGVVQFDTTRNRFLAAGDE---------------------------------FQIKFWDMD 618 (915)
Q Consensus 590 ------------------~v~~~~~sp~~~~l~s~~~d---------------------------------g~i~iwd~~ 618 (915)
.-..++++|+..+++....+ |.|.-+|+.
T Consensus 370 ~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~ 449 (527)
T TIGR03075 370 DGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPI 449 (527)
T ss_pred CCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCC
Confidence 00125667766665543222 457788888
Q ss_pred CCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 002494 619 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (915)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 669 (915)
+++.+...+.... ...+. ..-.+.+++.++.||.++.+|..+|+.+.+
T Consensus 450 tGk~~W~~~~~~p--~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~ 497 (527)
T TIGR03075 450 TGKIVWEHKEDFP--LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWK 497 (527)
T ss_pred CCceeeEecCCCC--CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEE
Confidence 8888887764322 11122 222456777888899999999999954443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.092 Score=61.97 Aligned_cols=199 Identities=13% Similarity=0.125 Sum_probs=113.4
Q ss_pred EEEEeCCCcEEEEEcCCCeeEEEecCCCCC--------EEEEEeec--------------CCCccEEEEEeCCCeEEEEe
Q 002494 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAP--------VYSVCPHH--------------KESIQFIFSTAIDGKIKAWL 527 (915)
Q Consensus 470 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--------v~~i~~~~--------------~~~~~~l~s~~~dg~i~iwd 527 (915)
++.++.++.|.-.|..+|+.+.++...... .+.+.+.. ...+..++.++.|+.+.-.|
T Consensus 197 lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALD 276 (764)
T TIGR03074 197 LYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALD 276 (764)
T ss_pred EEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEE
Confidence 555555666666676666666555422110 11122211 11234788888999999999
Q ss_pred cCCCCceeEecCCCC------------cEEEEEECC--CCCEEEEEeecCC------CCceEEEEECCCCeeEEEecCCC
Q 002494 528 YDYLGSRVDYDAPGN------------WCTMMAYSA--DGTRLFSCGTSKE------GESHLVEWNESEGAIKRTYSGFR 587 (915)
Q Consensus 528 ~~~~~~~~~~~~~~~------------~i~~~~~sp--~g~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~~ 587 (915)
.++++....+...+. ....+.-.| .+..+++++...+ ..+.|+-+|.++|+.+-.+....
T Consensus 277 A~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~ 356 (764)
T TIGR03074 277 ADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGN 356 (764)
T ss_pred CCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCC
Confidence 988877655432110 000111122 1335555543222 26789999999999987765210
Q ss_pred ---------C-------Cce-EEEEEcCCCCEEEEEe------------------CCCcEEEEeCCCCceEEEEcCCCCC
Q 002494 588 ---------K-------RSL-GVVQFDTTRNRFLAAG------------------DEFQIKFWDMDNMNMLTTVDADGGL 632 (915)
Q Consensus 588 ---------~-------~~v-~~~~~sp~~~~l~s~~------------------~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (915)
+ ..+ ...+++|....++.+. ..+.|.-.|.++|+....++...+
T Consensus 357 p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h- 435 (764)
T TIGR03074 357 PDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH- 435 (764)
T ss_pred CCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC-
Confidence 0 011 2345555555554422 234677788899999988876332
Q ss_pred CCcce---------EEEcC-CCC---EEEEEeCCCcEEEEEcCCCceeeeec
Q 002494 633 PASPR---------LRFNK-EGS---LLAVTTSDNGIKILANSDGVRLLRML 671 (915)
Q Consensus 633 ~~v~~---------v~~s~-~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~ 671 (915)
.++. +.+.. +|+ .++.++.+|.+.++|..+| +.+...
T Consensus 436 -D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG-~~l~~~ 485 (764)
T TIGR03074 436 -DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG-EPIVPV 485 (764)
T ss_pred -ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC-CEEeec
Confidence 1111 22333 553 8899999999999999999 444443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.026 Score=63.02 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=75.5
Q ss_pred EEEEEECCCCCEEEEEe-ecCCCCceEEEEECCCCeeEEEe-cCCCCCceEEEEEcCCCCEEEEEeCC-----------C
Q 002494 544 CTMMAYSADGTRLFSCG-TSKEGESHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTTRNRFLAAGDE-----------F 610 (915)
Q Consensus 544 i~~~~~sp~g~~l~~~~-~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~s~~~d-----------g 610 (915)
+...++||||++++.+- ..++....++++|+.+|+.+... ... ....+.|.++++.|+....+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~---~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP---KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE---ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc---ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34678999999998654 34444578999999999776532 222 22339999998887766532 2
Q ss_pred cEEEEeCCCCceE--EEEcCCCCCCCcceEEEcCCCCEEEEEeCC----CcEEEEEcCCC
Q 002494 611 QIKFWDMDNMNML--TTVDADGGLPASPRLRFNKEGSLLAVTTSD----NGIKILANSDG 664 (915)
Q Consensus 611 ~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d----g~i~iwd~~~~ 664 (915)
.|+.|.+.+...- ..+...........+..++|+++|+..... ..+.+.++..+
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 4888888876433 444443332124578889999988765432 34677777654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.057 Score=56.44 Aligned_cols=230 Identities=13% Similarity=0.102 Sum_probs=130.0
Q ss_pred CCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEe----
Q 002494 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF---- 493 (915)
Q Consensus 418 pd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~---- 493 (915)
..++.|+.|+.+| +.++++......... .+...|..+...++-+. +++- .|+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i----~~~~~I~ql~vl~~~~~--llvL-sd~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI----LKLSSITQLSVLPELNL--LLVL-SDGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE----eecceEEEEEEecccCE--EEEE-cCCccEEEEchhhcccccccccc
Confidence 3578999999998 899998333322211 12334999999998873 3333 3599999998754332210
Q ss_pred ----------cCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCC-----CceeEecCCCCcEEEEEECCCCCEEEE
Q 002494 494 ----------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-----GSRVDYDAPGNWCTMMAYSADGTRLFS 558 (915)
Q Consensus 494 ----------~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~~~~sp~g~~l~~ 558 (915)
......+...+......+...+.....+.|.+|..... .....+.. ...+.+++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEE
Confidence 11223344444112223334445555568888877653 22233333 3567888888 556666
Q ss_pred EeecCCCCceEEEEECCCCeeEEEecCCCC-----------CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE--E
Q 002494 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT--T 625 (915)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-----------~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~--~ 625 (915)
+. .....+.|+.++.....+..... .++..+.. +++.+|++- |..-.+.|. .|+..+ .
T Consensus 154 ~~-----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GT-----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred Ee-----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 65 23378899987766544322111 12333333 345555543 223333444 344333 2
Q ss_pred EcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCC
Q 002494 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (915)
Q Consensus 626 ~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 674 (915)
+.-.. ...++++. ..+|+..+. +.|.||++.++ ++++.+...
T Consensus 225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~-~lvQ~i~~~ 266 (275)
T PF00780_consen 225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETG-ELVQTIPLP 266 (275)
T ss_pred EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCC-cEEEEEECC
Confidence 22222 34556664 467777666 45999999999 888888754
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0059 Score=67.27 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=70.5
Q ss_pred CCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEE
Q 002494 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (915)
Q Consensus 346 ~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s 425 (915)
.+.+.....|++.. ++|.|+..|.|.++-+..+..... .+....-..|...|+|++|++|+..+.+
T Consensus 76 ~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~-------------~~~t~~d~~~~~rVTal~Ws~~~~k~ys 141 (726)
T KOG3621|consen 76 TGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDL-------------DYVTPCDKSHKCRVTALEWSKNGMKLYS 141 (726)
T ss_pred cceEEEEEecchhH-hhhhhcCCceEEeehhhccCCCcc-------------eeeccccccCCceEEEEEecccccEEee
Confidence 34556666788774 788899999999999887433221 1111112348899999999999999999
Q ss_pred EECCCeEEEEEecCC-CceeeeEEeecccCCeeEEEEe
Q 002494 426 AFSKHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFA 462 (915)
Q Consensus 426 ~~~dg~i~vwd~~~~-~~~~~~~~~~~h~~~v~~~~~s 462 (915)
|...|.|..-.+++. ........+-.....|..+.+.
T Consensus 142 GD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 142 GDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 999999999888872 1112222333345677777664
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.09 Score=57.98 Aligned_cols=233 Identities=14% Similarity=0.058 Sum_probs=116.4
Q ss_pred cCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCce--e-eeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcC
Q 002494 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL--R-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (915)
Q Consensus 409 ~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~--~-~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~ 485 (915)
+.|.++.|+.+ ..|++...||.+++||+.+.... . ......-....+....+..+|- .+++ .++.+.+..-.
T Consensus 81 ~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt--~~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLT--GNNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEEC--CCCeEEEEeCc
Confidence 78999999885 55667778999999998743200 0 0000000111222223333442 2333 34444444322
Q ss_pred CCe-eEEEec---C-----CCC-CEEE-EEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCC
Q 002494 486 AGR-KQYTFE---G-----HEA-PVYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (915)
Q Consensus 486 ~~~-~~~~~~---~-----~~~-~v~~-i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~ 554 (915)
... ....+. . +.. .... ..+.. +....+....++.+.+.+-..... + ...+++..++.||+|+
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~--~~~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~ 229 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS--DRVVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGK 229 (410)
T ss_pred cccchhhccccCCCcccccccccccccceEeec--CcceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCC
Confidence 211 111111 0 000 0000 11221 223444455555665443322111 1 1245799999999999
Q ss_pred EEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCC
Q 002494 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (915)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (915)
++|.-.. ++.+.+.+..-.+....+..........+.|..+...++.- ...+.+... .+
T Consensus 230 ~iAl~t~----~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~-----------~~---- 288 (410)
T PF04841_consen 230 FIALFTD----SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGP-----------DG---- 288 (410)
T ss_pred EEEEEEC----CCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECC-----------CC----
Confidence 9988764 56688887665666666655433355666676543322222 223333331 11
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCC
Q 002494 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAM 676 (915)
Q Consensus 635 v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 676 (915)
..+.|.-++..++..-.|| +||..-..- +.++.+.....
T Consensus 289 -~~~~~~~~~~~~l~~E~DG-~riit~~~~-~~l~~Vp~~~~ 327 (410)
T PF04841_consen 289 -DSISFWYDGPVILVSEIDG-VRIITSTSH-EFLQRVPDSTE 327 (410)
T ss_pred -CceEEeccCceEEeccCCc-eEEEeCCce-EEEEECCHHHH
Confidence 1245555566666666677 888876655 55666544333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.057 Score=54.28 Aligned_cols=204 Identities=13% Similarity=0.161 Sum_probs=111.5
Q ss_pred EeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCC-CCCEEEEEeecCCCccEEEEEeCCCeEEEE
Q 002494 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (915)
Q Consensus 448 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw 526 (915)
.+.+-...++.++|+|+.+. ++++....+.|..++. +|+.+.++.-. .+..-.|++.. ++.++++.-.++.+.++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~t-LfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g--~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGT-LFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG--NGRYVLSEERDQRLYIF 91 (248)
T ss_dssp E-TT--S-EEEEEEETTTTE-EEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S--TTEEEEEETTTTEEEEE
T ss_pred ECCCccCCccccEEcCCCCe-EEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC--CCEEEEEEcCCCcEEEE
Confidence 44455567999999998776 6777888889988885 57877776532 35577777753 44677766678999999
Q ss_pred ecCCCCce------eEe--c---CCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEEC--CCCee-EEEecC-----CC
Q 002494 527 LYDYLGSR------VDY--D---APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE--SEGAI-KRTYSG-----FR 587 (915)
Q Consensus 527 d~~~~~~~------~~~--~---~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~--~~~~~-~~~~~~-----~~ 587 (915)
++...... ..+ . ..+..+-.++|+|.++.++++-.. ....|+-++. ..... +..... ..
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~--~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER--KPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES--SSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC--CChhhEEEccccCccceeeccccccccccce
Confidence 88433211 111 1 133468999999998888877542 1334555554 11111 111111 11
Q ss_pred CCceEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCceEEEEcCCCC-------CCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 002494 588 KRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLTTVDADGG-------LPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (915)
Q Consensus 588 ~~~v~~~~~sp~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~s~~~dg~i~iw 659 (915)
...+..++++|....++. +.....|..+| .+|+.+..+....+ ....-.|+|.++|++.+++ .-+..++|
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 125778999997655555 55778888999 56777777654432 2245689999999765554 55545443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.058 Score=59.46 Aligned_cols=225 Identities=12% Similarity=0.117 Sum_probs=113.3
Q ss_pred EEEcCCCCEEEEEECC----------C-eEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEE
Q 002494 414 CVWGPDGLMLGVAFSK----------H-IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (915)
Q Consensus 414 ~~~spd~~~l~s~~~d----------g-~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vw 482 (915)
++.+|.|.-+|....+ . .|.||+..+ +.+... .+.. +.+.++.|+.+.. |+.-..||.++++
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i-~w~~--~~iv~~~wt~~e~---LvvV~~dG~v~vy 106 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSI-PWDS--GRIVGMGWTDDEE---LVVVQSDGTVRVY 106 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEE-EECC--CCEEEEEECCCCe---EEEEEcCCEEEEE
Confidence 3445555555554333 2 588998765 444322 3333 7899999988665 6667789999999
Q ss_pred EcCCCeeEEEec--CCCCCEEEEE-e--ecCCCccEEEEEeCCCeEEEEe-cCCCCceeEe-cCCCC--------cEEE-
Q 002494 483 DVVAGRKQYTFE--GHEAPVYSVC-P--HHKESIQFIFSTAIDGKIKAWL-YDYLGSRVDY-DAPGN--------WCTM- 546 (915)
Q Consensus 483 d~~~~~~~~~~~--~~~~~v~~i~-~--~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~-~~~~~--------~i~~- 546 (915)
|+. |+....+. .....|.... + ...++| ++.-..++.+.+.. .......... ..+.. ....
T Consensus 107 ~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i 183 (410)
T PF04841_consen 107 DLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVI 183 (410)
T ss_pred eCC-CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccc
Confidence 976 33311111 1111221111 1 111133 22223344443332 1111010111 00000 0000
Q ss_pred EEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 002494 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626 (915)
Q Consensus 547 ~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 626 (915)
..++.+....+.... ...+.+.+....+. +.. .+ ++..++.||+|+++|.-..+|.+.+....-.+....+
T Consensus 184 ~~l~~~~~~~i~~~~----g~~i~~i~~~~~~~---i~~-~~-~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~ 254 (410)
T PF04841_consen 184 PLLSSDRVVEILLAN----GETIYIIDENSFKQ---IDS-DG-PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF 254 (410)
T ss_pred eEeecCcceEEEEec----CCEEEEEEcccccc---ccC-CC-CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence 123333333332221 22233233221111 111 22 7999999999999999999999999988777777777
Q ss_pred cCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 002494 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (915)
Q Consensus 627 ~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd 660 (915)
..... .....+.|..+...++.- ...+.+..
T Consensus 255 ~~~~~-~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 255 DTDSK-SPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred ecCcC-CCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 65522 255688888765444433 33455544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.013 Score=57.58 Aligned_cols=96 Identities=16% Similarity=0.087 Sum_probs=60.5
Q ss_pred CeeEEEecCCCCCceEEEEEcCCCC-EEEEEeCCCc-EEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCC-
Q 002494 577 GAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD- 653 (915)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d- 653 (915)
|+++....-.. .-..++++|.-. -++.+-.-|+ ..++|....+...++....+..-.-.=.|||||.+|+..-.|
T Consensus 58 Gk~v~~~~lpa--R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf 135 (366)
T COG3490 58 GKIVFATALPA--RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF 135 (366)
T ss_pred Cceeeeeeccc--ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence 55555443322 345578888654 3445555554 578999988777776544332223345799999999876543
Q ss_pred ----CcEEEEEcCCCceeeeeccCC
Q 002494 654 ----NGIKILANSDGVRLLRMLEGR 674 (915)
Q Consensus 654 ----g~i~iwd~~~~~~~~~~~~~~ 674 (915)
|.|-|||...+.+.+-.+..|
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~ 160 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTH 160 (366)
T ss_pred CCCCceEEEEecccccceecccccC
Confidence 789999988765444444444
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.44 Score=55.32 Aligned_cols=413 Identities=11% Similarity=0.072 Sum_probs=207.0
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCC--C--
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--G-- 420 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd--~-- 420 (915)
....+++.+.+.+...+ +.++.++.+...++..+..... . -..-+..|.|+.++|- +
T Consensus 486 ~p~~~ti~~~~~n~sqV-vvA~~~~~l~y~~i~~~~l~e~-~-----------------~~~~e~evaCLDisp~~d~~~ 546 (1096)
T KOG1897|consen 486 PPGKITIGVVSANASQV-VVAGGGLALFYLEIEDGGLREV-S-----------------HKEFEYEVACLDISPLGDAPN 546 (1096)
T ss_pred CCCceEEEEEeecceEE-EEecCccEEEEEEeeccceeee-e-----------------eheecceeEEEecccCCCCCC
Confidence 34555555555555433 3344456666666655441110 0 1224668999999984 2
Q ss_pred --CEEEEEECCCeEEEEEecCCCceeeeEEeec--ccCCeeEEEEecCCCeEEEEEEeCCCcEEEEE--cCCCeeEEEe-
Q 002494 421 --LMLGVAFSKHIVHLYTYNPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD--VVAGRKQYTF- 493 (915)
Q Consensus 421 --~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd--~~~~~~~~~~- 493 (915)
+.++.|..+..+.+.-......+.....+.+ -...|.-..|-.|.. +|.++..||.+.-+- ..+|..-..-
T Consensus 547 ~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~--yLlvalgdG~l~~fv~d~~tg~lsd~Kk 624 (1096)
T KOG1897|consen 547 KSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIH--YLLVALGDGALLYFVLDINTGQLSDRKK 624 (1096)
T ss_pred cceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccce--EEEEEcCCceEEEEEEEcccceEccccc
Confidence 2678887776665554333222222211221 123455555655555 788899999887654 4444321111
Q ss_pred -cCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEE-EEEECCC--CCEEEEEeecCCCCceE
Q 002494 494 -EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCT-MMAYSAD--GTRLFSCGTSKEGESHL 569 (915)
Q Consensus 494 -~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~-~~~~sp~--g~~l~~~~~~~~~~~~i 569 (915)
.-...++.--.|+.. ..+.++++ .|+-..+|..+. +... ....-..+. .+.|+.+ +..++++. .+.+
T Consensus 625 ~~lGt~P~~Lr~f~sk-~~t~vfa~-sdrP~viY~~n~-kLv~-spls~kev~~~c~f~s~a~~d~l~~~~-----~~~l 695 (1096)
T KOG1897|consen 625 VTLGTQPISLRTFSSK-SRTAVFAL-SDRPTVIYSSNG-KLVY-SPLSLKEVNHMCPFNSDAYPDSLASAN-----GGAL 695 (1096)
T ss_pred cccCCCCcEEEEEeeC-CceEEEEe-CCCCEEEEecCC-cEEE-eccchHHhhhhcccccccCCceEEEec-----CCce
Confidence 112334433344433 22334333 344444443221 1111 000000111 1112221 23455443 2335
Q ss_pred EEEECCCCe--eEEEecCCCCCceEEEEEcCCCCEEEEEeC-----------C---CcEEEEeCCCCceEEEEcCCC--C
Q 002494 570 VEWNESEGA--IKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-----------E---FQIKFWDMDNMNMLTTVDADG--G 631 (915)
Q Consensus 570 ~~wd~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-----------d---g~i~iwd~~~~~~~~~~~~~~--~ 631 (915)
.+.-+..-+ -+++..-+. ..+.+++.+....+++.+. . ..++++|-++-+.+...+... .
T Consensus 696 ~i~tid~iqkl~irtvpl~~--~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~ 773 (1096)
T KOG1897|consen 696 TIGTIDEIQKLHIRTVPLGE--SPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNET 773 (1096)
T ss_pred EEEEecchhhcceeeecCCC--ChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccce
Confidence 555443222 233333332 5666777764444444331 1 146777777766665544332 1
Q ss_pred CCCcceEEEcCC-CCEEEEEeC----------CCcEEEEEcCCCceeeeeccCCCCcccccCCCCCCCCCCceeeecccC
Q 002494 632 LPASPRLRFNKE-GSLLAVTTS----------DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 700 (915)
Q Consensus 632 ~~~v~~v~~s~~-~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 700 (915)
...+.++.|..| +.++++|.. .|.|.+|....+ ..++.+..+. +.. ..++
T Consensus 774 ~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~L~~v~e~~--v~G-------------av~a--- 834 (1096)
T KOG1897|consen 774 ALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NSLELVAETV--VKG-------------AVYA--- 834 (1096)
T ss_pred eeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC-Cceeeeeeee--ecc-------------ceee---
Confidence 224556668877 778888763 477777777663 2233322211 110 0000
Q ss_pred ccccccCCcccCCCCCCCCcccccccCCCceeccCCceeeccCCCceeEeecCCCCCccceeEeecCCccCCCceEEEEE
Q 002494 701 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIY 780 (915)
Q Consensus 701 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 780 (915)
..--+|+++|.-+ ..|++|++.+. ..++ .. ..+..++..+..
T Consensus 835 ------------------------------L~~fngkllA~In-~~vrLye~t~~---~eLr---~e-~~~~~~~~aL~l 876 (1096)
T KOG1897|consen 835 ------------------------------LVEFNGKLLAGIN-QSVRLYEWTTE---RELR---IE-CNISNPIIALDL 876 (1096)
T ss_pred ------------------------------hhhhCCeEEEecC-cEEEEEEcccc---ceeh---hh-hcccCCeEEEEE
Confidence 0112456665443 57999998852 2222 11 127778999999
Q ss_pred ecCCceEEEeeccceeEEeecccccCCCCCCccccccceeecCCCCCceeccCCCCCCCCCceeEEEEecCCCeEEEecC
Q 002494 781 TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG 860 (915)
Q Consensus 781 s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~I~~l~~S~dg~~L~s~sd 860 (915)
.-.|..+++|.-=+++.+-.. +-..|.... .....+ ....+++.+-.+..|+.+-.+
T Consensus 877 ~v~gdeI~VgDlm~Sitll~y--------------------~~~eg~f~e--vArD~~-p~Wmtaveil~~d~ylgae~~ 933 (1096)
T KOG1897|consen 877 QVKGDEIAVGDLMRSITLLQY--------------------KGDEGNFEE--VARDYN-PNWMTAVEILDDDTYLGAENS 933 (1096)
T ss_pred EecCcEEEEeeccceEEEEEE--------------------eccCCceEE--eehhhC-ccceeeEEEecCceEEeeccc
Confidence 999998999887776654433 223333222 111124 678888888888777776556
Q ss_pred CeeEEeecc
Q 002494 861 GKVSLFNMM 869 (915)
Q Consensus 861 ~~v~vw~l~ 869 (915)
|.+.+-..+
T Consensus 934 gNlf~v~~d 942 (1096)
T KOG1897|consen 934 GNLFTVRKD 942 (1096)
T ss_pred ccEEEEEec
Confidence 666555433
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0025 Score=65.58 Aligned_cols=113 Identities=12% Similarity=0.171 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhhCCCCc----------hHHHHHHHHcCCHHHHHHHHcCCC-cccccccchhHH
Q 002494 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKHFEDQVQAGEWDEVERYLCGFT-KVEDNRYSMKIF 73 (915)
Q Consensus 5 ~~ev~rli~q~L~~~g~~~s~~~L~~ESg~~~~----------~~~l~~~i~~G~w~~~~~~l~~~~-~~~~~~~~~~~~ 73 (915)
.+.+..+|..++...|..+.+..|-+|+|...+ +.++.+++..||-.-|++.+.... .+.+. ...+-
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE 193 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLE 193 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHH
Confidence 344688899999999999999999999998753 688899999999999999887752 22221 33488
Q ss_pred HHHHHHHHHHHHhccCHH--HHHHHHHHhcccccccCHHHHHHHHHhh
Q 002494 74 FEIRKQKYLEALDRQDRA--KAVEILVKDLKVFSSFNEELFKEITQLL 119 (915)
Q Consensus 74 ~~i~~~~~lEll~~~~~~--~A~~~l~~~~~~~~~~~~~~~~~l~~l~ 119 (915)
|.+..+.|++++..|... +|++..|+.++||...+..+.+.|-..+
T Consensus 194 ~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl 241 (394)
T KOG2817|consen 194 FKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSL 241 (394)
T ss_pred HHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 999999999999999888 9999999999998766655566554444
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00012 Score=78.78 Aligned_cols=159 Identities=13% Similarity=0.127 Sum_probs=108.2
Q ss_pred CCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCce--eEecCCCCcEEEEEECC-CCCEEEEEeecCCCCceEEEEEC
Q 002494 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNE 574 (915)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~sp-~g~~l~~~~~~~~~~~~i~~wd~ 574 (915)
..+.|+++..+.+..+++.|..+|.|-+-..+..... .....+...+++++|++ |.++||.+-...+.+..+.+||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3455666555555457788888999988877654332 23344566889999998 55677766544456788999999
Q ss_pred CCC--ee--EEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceEEEEcCCCCCCCcceEEEcC-CCCEEE
Q 002494 575 SEG--AI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNK-EGSLLA 648 (915)
Q Consensus 575 ~~~--~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~ 648 (915)
.++ .+ -..|.+.......+++|..+.+.+.+|.....+.++|++.. .....+... .+..+..+| .+++++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk----~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTK----YVQGITVDPFSPNYFC 212 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhh----hcccceecCCCCCcee
Confidence 876 22 12233322225668888888888999988889999999832 222222211 466788888 788887
Q ss_pred EEeCCCcEEEEEc
Q 002494 649 VTTSDNGIKILAN 661 (915)
Q Consensus 649 s~~~dg~i~iwd~ 661 (915)
+-. ||.|-+||.
T Consensus 213 s~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 213 SNS-DGDIAIWDT 224 (783)
T ss_pred ccc-cCceeeccc
Confidence 766 899999994
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.12 Score=53.96 Aligned_cols=229 Identities=14% Similarity=0.091 Sum_probs=127.1
Q ss_pred CCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 002494 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYT 436 (915)
Q Consensus 357 d~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd 436 (915)
.++ .|+.|+.+| +.+++......... ..+...|..+...|+-+.|++-+ |+.+++++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~--------------------i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTR--------------------ILKLSSITQLSVLPELNLLLVLS-DGQLYVYD 62 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCcccee--------------------EeecceEEEEEEecccCEEEEEc-CCccEEEE
Confidence 344 467788888 89999832211110 11233499999999888777665 49999999
Q ss_pred ecCCCceeeeE-----------EeecccCCeeEEE--EecCCCeEEEEEEeCCCcEEEEEcCCC-----eeEEEecCCCC
Q 002494 437 YNPTGELRQHL-----------EIDAHVGGVNDIA--FAHPNKQLCIVTCGDDKMIKVWDVVAG-----RKQYTFEGHEA 498 (915)
Q Consensus 437 ~~~~~~~~~~~-----------~~~~h~~~v~~~~--~s~~~~~~~l~s~~~d~~i~vwd~~~~-----~~~~~~~~~~~ 498 (915)
+..-....... ..-.....+...+ -...+.. .++. ...+.|.+|..... +..+.+. -..
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~v-a~kk~i~i~~~~~~~~~f~~~~ke~~-lp~ 139 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCV-AVKKKILIYEWNDPRNSFSKLLKEIS-LPD 139 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEE-EECCEEEEEEEECCcccccceeEEEE-cCC
Confidence 87643322100 0011223444444 1123332 3444 44558888887653 3445554 457
Q ss_pred CEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCC------------CcEEEEEECCCCCEEEEEeecCCCC
Q 002494 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG------------NWCTMMAYSADGTRLFSCGTSKEGE 566 (915)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~~i~~~~~sp~g~~l~~~~~~~~~~ 566 (915)
.+.+++|.. +.++.|..+ ...+.|+.+........... .++..+.. +++.+|++. +
T Consensus 140 ~~~~i~~~~----~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~------~ 207 (275)
T PF00780_consen 140 PPSSIAFLG----NKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY------D 207 (275)
T ss_pred CcEEEEEeC----CEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe------c
Confidence 788888873 357777654 46778888655443322111 12333333 445555543 2
Q ss_pred ceEEEEECCCCeeEE--EecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCC
Q 002494 567 SHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (915)
Q Consensus 567 ~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 629 (915)
..-...|. .|+..+ .+.-.. ....+++ ...++++.+.+ .|.||++.+++.++.+...
T Consensus 208 ~~g~fv~~-~G~~~r~~~i~W~~--~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 NIGVFVNK-NGEPSRKSTIQWSS--APQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ceEEEEcC-CCCcCcccEEEcCC--chhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 22233343 354433 222211 3444555 34577776665 5999999999999988754
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.063 Score=56.04 Aligned_cols=223 Identities=15% Similarity=0.099 Sum_probs=130.2
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCe
Q 002494 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (915)
Q Consensus 352 v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~ 431 (915)
..|.|+...++.+--..+.|.-|+..+++.. +|. +.+.+.++..-..+..|+++.. .
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~------~~~---------------~p~~~~~~~~~d~~g~Lv~~~~--g 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR------VFP---------------SPGGFSSGALIDAGGRLIACEH--G 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE------EEE---------------CCCCcccceeecCCCeEEEEcc--c
Confidence 3567777777777777889999998876432 111 2233444444444555555532 3
Q ss_pred EEEEEecCCCceeeeEEee-c-ccCCeeEEEEecCCCeEEEEEEeCC------------CcEEEEEcCCCeeEEEecCCC
Q 002494 432 VHLYTYNPTGELRQHLEID-A-HVGGVNDIAFAHPNKQLCIVTCGDD------------KMIKVWDVVAGRKQYTFEGHE 497 (915)
Q Consensus 432 i~vwd~~~~~~~~~~~~~~-~-h~~~v~~~~~s~~~~~~~l~s~~~d------------~~i~vwd~~~~~~~~~~~~~~ 497 (915)
+.+++.+++.......... + .....+++...|+|. +.++ ... |.++.+|. .+..+..+..+-
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfg-t~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~ 162 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFG-DMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL 162 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEe-CCCccccCccccCCcceEEEEcC-CCCEEEeecCcE
Confidence 5566766554422211111 1 124567888999998 3333 222 33444443 566666666555
Q ss_pred CCEEEEEeecCCCccEEEEEeCCCeEEEEecCC-C----Cc--eeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEE
Q 002494 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-L----GS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (915)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~-~----~~--~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~ 570 (915)
..-+.++|+|++. .++++=+..+.|.-|++.. . .. ........+..-.++...+|.+.+++.. +.+.|.
T Consensus 163 ~~~NGla~SpDg~-tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~ 238 (307)
T COG3386 163 TIPNGLAFSPDGK-TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVV 238 (307)
T ss_pred EecCceEECCCCC-EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEE
Confidence 6668899999753 3444444558888887762 1 11 1122223344556677788887754432 123699
Q ss_pred EEECCCCeeEEEecCCCCCceEEEEEc-CCCCEEEEEe
Q 002494 571 EWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 607 (915)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~s~~ 607 (915)
.|+.. |+.+..+..+.. .+++++|- |+.+.|++.+
T Consensus 239 ~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 239 RFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 99988 889888887754 67777774 5556655544
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.11 Score=51.26 Aligned_cols=264 Identities=12% Similarity=0.136 Sum_probs=144.2
Q ss_pred cCCCCCceeeecCCCcccEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCc-EEEEEcCCCceecccceeeeecccCcccc
Q 002494 321 AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGD-ISLWEVGSRERLAHKPFKVWDISAASMPL 399 (915)
Q Consensus 321 s~~g~~~~~~~~d~~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 399 (915)
.+||++-+.... ..++++..+.-...-..|+|+|..+.-++.+-.-|+ ..++|..+.+...... ..
T Consensus 44 ~~dgs~g~a~~~--eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-----------s~ 110 (366)
T COG3490 44 ARDGSFGAATLS--EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-----------SQ 110 (366)
T ss_pred ccCCceeEEEEc--cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-----------cc
Confidence 445554333222 235566666666677789999988766666666665 5688888776543210 00
Q ss_pred cccccCCCccCeEEEEEcCCCCEEEEEEC-----CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEe
Q 002494 400 QNALLNDAAISVNRCVWGPDGLMLGVAFS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474 (915)
Q Consensus 400 ~~~~~~~~~~~v~~~~~spd~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~ 474 (915)
...-+.+|. .|||||.+|...-. -|.|-|||...+ ....-.+..|.-....+.|.+||. .++.+.
T Consensus 111 ~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGr--tlvvan 180 (366)
T COG3490 111 EGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGR--TLVVAN 180 (366)
T ss_pred cCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCc--EEEEeC
Confidence 111133443 59999999987643 378999998753 233446677888888999999999 444432
Q ss_pred C------------------CCcEEEEEcCCCeeEEEe--c--CCCCCEEEEEeecCCCccEEEEEeCCCe-----EEEEe
Q 002494 475 D------------------DKMIKVWDVVAGRKQYTF--E--GHEAPVYSVCPHHKESIQFIFSTAIDGK-----IKAWL 527 (915)
Q Consensus 475 ~------------------d~~i~vwd~~~~~~~~~~--~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~-----i~iwd 527 (915)
. .-++.+.|..+|..+.+. . .+.-.|.-++..+ +|+.++-+-..|. -.+=-
T Consensus 181 GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~--dgtvwfgcQy~G~~~d~ppLvg~ 258 (366)
T COG3490 181 GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR--DGTVWFGCQYRGPRNDLPPLVGH 258 (366)
T ss_pred CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC--CCcEEEEEEeeCCCccCCcceee
Confidence 1 112334444455443322 1 1233455555433 3333322222111 00000
Q ss_pred cCCCCceeEecCC-------CCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCC
Q 002494 528 YDYLGSRVDYDAP-------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (915)
Q Consensus 528 ~~~~~~~~~~~~~-------~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~ 600 (915)
...++....+... ...|-+++.+-+..+++..+. ..+...+||..+|..+..-.... ...++ +..
T Consensus 259 ~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP---~GN~~vi~da~tG~vv~~a~l~d---aaGva--~~~ 330 (366)
T COG3490 259 FRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP---RGNRAVIWDAATGAVVSEAALPD---AAGVA--AAK 330 (366)
T ss_pred ccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC---CCCeEEEEEcCCCcEEecccccc---cccce--ecc
Confidence 0111111111111 225677888776666666553 24557899999998876543322 22222 334
Q ss_pred CEEEEEeCCCcEEEEeC
Q 002494 601 NRFLAAGDEFQIKFWDM 617 (915)
Q Consensus 601 ~~l~s~~~dg~i~iwd~ 617 (915)
.-+++.+.+|.+.++.-
T Consensus 331 ~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 331 GGFAVSSGQGRIIFYSR 347 (366)
T ss_pred CceEEecCCceEEeccc
Confidence 44777777888888743
|
|
| >cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00055 Score=61.78 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=67.2
Q ss_pred ccchhHHHHHHHHHHHHHHhccCHHHHHHHHHHhcccccccCHHHHHHHHHhhccccccccccccccCC-------chHH
Q 002494 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (915)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (915)
++.. ++|+++.|.||||+..|+.++|..++.+.-..+...+.+++++|+.+.+..++.+++....+++ +..+
T Consensus 25 EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s 103 (133)
T cd08044 25 ELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDA 103 (133)
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHH
Confidence 4444 9999999999999999999999999998877766668899999999999999888887776655 3555
Q ss_pred HHHHHHHHHH
Q 002494 140 RNIMLVELKK 149 (915)
Q Consensus 140 r~~l~~~l~~ 149 (915)
-..|+..|++
T Consensus 104 ~~lL~~~L~~ 113 (133)
T cd08044 104 YSLLLRFLES 113 (133)
T ss_pred HHHHHHHHHH
Confidence 5666666665
|
The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.087 Score=55.01 Aligned_cols=215 Identities=13% Similarity=0.055 Sum_probs=123.3
Q ss_pred EEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEec
Q 002494 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (915)
Q Consensus 459 ~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 538 (915)
..|.++... ++.+--..+.|.-|+..+++. ..+. +.+.+.++... +.. ..|+++.. .+.+++.++......+.
T Consensus 30 P~w~~~~~~-L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~-d~~-g~Lv~~~~--g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 30 PVWDPDRGA-LLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALI-DAG-GRLIACEH--GVRLLDPDTGGKITLLA 102 (307)
T ss_pred ccCcCCCCE-EEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceee-cCC-CeEEEEcc--ccEEEeccCCceeEEec
Confidence 356677775 455666678888998776643 2332 22333333322 212 34555433 34455655444422221
Q ss_pred -----CCCCcEEEEEECCCCCEEEEEee-----cC--CCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEE
Q 002494 539 -----APGNWCTMMAYSADGTRLFSCGT-----SK--EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (915)
Q Consensus 539 -----~~~~~i~~~~~sp~g~~l~~~~~-----~~--~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 606 (915)
......+.....|+|.+.+.... .. ...+.++.+|. .+..++.+..+-. .-+.++||||++.|+.+
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~-~~NGla~SpDg~tly~a 180 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT-IPNGLAFSPDGKTLYVA 180 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE-ecCceEECCCCCEEEEE
Confidence 11235677888999987765443 11 12345555554 4666666665443 56789999999888877
Q ss_pred eC-CCcEEEEeCCC--C---ceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCC-cEEEEEcCCCceeeeeccCCCCccc
Q 002494 607 GD-EFQIKFWDMDN--M---NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN-GIKILANSDGVRLLRMLEGRAMDKN 679 (915)
Q Consensus 607 ~~-dg~i~iwd~~~--~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~ 679 (915)
.. .+.|+-|++.. + .....+.........-.++...+|.+.+++..+| .|.+|+.. | +++..+.-....++
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~~t 258 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G-KLLGEIKLPVKRPT 258 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C-cEEEEEECCCCCCc
Confidence 64 47788887752 1 1111111111122445678888898886555554 89999988 7 66666665545555
Q ss_pred ccCCC
Q 002494 680 RCPSE 684 (915)
Q Consensus 680 ~~~~~ 684 (915)
.+.+.
T Consensus 259 ~~~Fg 263 (307)
T COG3386 259 NPAFG 263 (307)
T ss_pred cceEe
Confidence 55444
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.012 Score=68.28 Aligned_cols=147 Identities=14% Similarity=0.172 Sum_probs=99.0
Q ss_pred CCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCC-EEEEEeecC---CCccEEEEEeCCCeEEEEecCCCCce-eE--
Q 002494 464 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP-VYSVCPHHK---ESIQFIFSTAIDGKIKAWLYDYLGSR-VD-- 536 (915)
Q Consensus 464 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~i~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~-~~-- 536 (915)
....++|........|+-.|+..|+.+..+..|... |..++-... -...-.+.|-.+..+..||.+..+.. ..
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred cccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 344434444456688999999999999999887654 665543211 01234667788889999999875422 21
Q ss_pred --ecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 002494 537 --YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (915)
Q Consensus 537 --~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i 614 (915)
.........|++-+.+| +||+|+. +|.|++||--..+....+++-.. +|..+..+.||+++++.+.. .+.+
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~----~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~t-yLlL 643 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDG-YIAVGSN----KGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCKT-YLLL 643 (794)
T ss_pred ccccccCCCceEEEecCCc-eEEEEeC----CCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeecc-eEEE
Confidence 11234467888888888 5667764 66699999543333334555444 99999999999999987755 5777
Q ss_pred EeC
Q 002494 615 WDM 617 (915)
Q Consensus 615 wd~ 617 (915)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 765
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00079 Score=61.48 Aligned_cols=82 Identities=15% Similarity=0.287 Sum_probs=61.1
Q ss_pred ccchhHHHHHHHHHHHHHHhccCHHHHHHHHHHhcccccccCHHHHHHHHHhhccccccccccccccCC-------chHH
Q 002494 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (915)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (915)
++.. ++|+|+.|.||+|+..++.++|..++.+....+...+.+++.+|..+....++.+++....++. +..+
T Consensus 36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s 114 (142)
T PF04494_consen 36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDS 114 (142)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHH
Confidence 4444 9999999999999999999999999998877777667888999998888877776665555544 2445
Q ss_pred HHHHHHHHHH
Q 002494 140 RNIMLVELKK 149 (915)
Q Consensus 140 r~~l~~~l~~ 149 (915)
-..|+..|++
T Consensus 115 ~~lL~~fL~~ 124 (142)
T PF04494_consen 115 FSLLLQFLQE 124 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555544
|
The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.14 Score=54.81 Aligned_cols=216 Identities=12% Similarity=0.133 Sum_probs=115.5
Q ss_pred CeEEEEEecCCCceeeeEEeecccCCeeEE---EEecCC---CeEEEEEEeC----------CCcEEEEEcCCC----ee
Q 002494 430 HIVHLYTYNPTGELRQHLEIDAHVGGVNDI---AFAHPN---KQLCIVTCGD----------DKMIKVWDVVAG----RK 489 (915)
Q Consensus 430 g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~---~~s~~~---~~~~l~s~~~----------d~~i~vwd~~~~----~~ 489 (915)
+.|++.|..+.+.+. ...+.... .+.++ .+..+. .. +++.|+. .|.|.++++... ..
T Consensus 2 s~i~l~d~~~~~~~~-~~~l~~~E-~~~s~~~~~l~~~~~~~~~-~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~ 78 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLD-SFELEPNE-HVTSLCSVKLKGDSTGKKE-YIVVGTAFNYGEDPEPSSGRILVFEISESPENNFK 78 (321)
T ss_dssp -EEEEEETTTSSEEE-EEEEETTE-EEEEEEEEEETTS---SSE-EEEEEEEE--TTSSS-S-EEEEEEEECSS-----E
T ss_pred cEEEEEeCCCCeEEE-EEECCCCc-eEEEEEEEEEcCccccccC-EEEEEecccccccccccCcEEEEEEEEcccccceE
Confidence 357788877766553 33444322 34433 333221 33 6766643 288999999884 12
Q ss_pred EEEe--cCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEec--CCCCcEEEEEECCCCCEEEEEeecCCC
Q 002494 490 QYTF--EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLFSCGTSKEG 565 (915)
Q Consensus 490 ~~~~--~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~sp~g~~l~~~~~~~~~ 565 (915)
+..+ ....++|++++-. ++ .++. +.++.|.+|++.......... .....+.++... +++++++..
T Consensus 79 l~~i~~~~~~g~V~ai~~~---~~-~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~---- 147 (321)
T PF03178_consen 79 LKLIHSTEVKGPVTAICSF---NG-RLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDA---- 147 (321)
T ss_dssp EEEEEEEEESS-EEEEEEE---TT-EEEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEES----
T ss_pred EEEEEEEeecCcceEhhhh---CC-EEEE-eecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEc----
Confidence 2211 2357889998764 22 3333 345899999998777222211 122355666554 557777753
Q ss_pred CceEEEE--ECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-------C--ceEEEEcCCCCCCC
Q 002494 566 ESHLVEW--NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-------M--NMLTTVDADGGLPA 634 (915)
Q Consensus 566 ~~~i~~w--d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-------~--~~~~~~~~~~~~~~ 634 (915)
...+.++ +....+....-.......+.++.+-++++.++++..+|.+.++.... + +.......|-+ ..
T Consensus 148 ~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg-~~ 226 (321)
T PF03178_consen 148 MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG-DI 226 (321)
T ss_dssp SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S-S-
T ss_pred ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC-Cc
Confidence 2335544 55333233222222233678888886667899999999999998762 2 22222222322 15
Q ss_pred cceE---EEcC--CC------CEEEEEeCCCcEEEEE
Q 002494 635 SPRL---RFNK--EG------SLLAVTTSDNGIKILA 660 (915)
Q Consensus 635 v~~v---~~s~--~~------~~l~s~~~dg~i~iwd 660 (915)
|+++ ++.| .+ ..++.++.+|.|...-
T Consensus 227 v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 227 VNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred cceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 6666 4444 12 2488888999998443
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.19 Score=53.55 Aligned_cols=258 Identities=14% Similarity=0.108 Sum_probs=111.5
Q ss_pred cccEEEEec--C-CCCEEEEEEc-----------CCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccc
Q 002494 336 TKTVVRTLN--Q-GSNVMSMDFH-----------PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQN 401 (915)
Q Consensus 336 ~~~~~~~l~--h-~~~V~~v~fs-----------pd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (915)
-++++..+. + .++....-|+ .+.++|++-|-..+.|+|.|+.+...... -.++.+- +
T Consensus 51 YgqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~-l~KvIe~---~----- 121 (461)
T PF05694_consen 51 YGQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPR-LHKVIEP---E----- 121 (461)
T ss_dssp TTSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-E-EEEEE-H---H-----
T ss_pred cccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCc-eEeeeCH---H-----
Confidence 346677765 3 3577777776 24555555555888999999986432110 0011100 0
Q ss_pred cccC-CCccCeEEEEEcCCCCEEEEE--EC----CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEe
Q 002494 402 ALLN-DAAISVNRCVWGPDGLMLGVA--FS----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474 (915)
Q Consensus 402 ~~~~-~~~~~v~~~~~spd~~~l~s~--~~----dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~ 474 (915)
.+.. ..-..-..+.--|+|+.++++ +. -|-+.++|-++.+.......-.+....-.++.|.|..+ .++|..
T Consensus 122 ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSe 199 (461)
T PF05694_consen 122 EVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSE 199 (461)
T ss_dssp HHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B
T ss_pred HHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEec
Confidence 0000 011122233445789888875 22 24577777766443332111111223456677788766 677654
Q ss_pred C--------------------CCcEEEEEcCCCeeEEEecCCC--CCEEEEEeecCCCccE-EEEEeCCCeEEEEec-CC
Q 002494 475 D--------------------DKMIKVWDVVAGRKQYTFEGHE--APVYSVCPHHKESIQF-IFSTAIDGKIKAWLY-DY 530 (915)
Q Consensus 475 ~--------------------d~~i~vwd~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~~-l~s~~~dg~i~iwd~-~~ 530 (915)
. ..++.+||+.+.+.++++.-.. .....+.|..+++..+ ++.+....+|..|-- +.
T Consensus 200 Wg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~ 279 (461)
T PF05694_consen 200 WGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD 279 (461)
T ss_dssp ---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET
T ss_pred cCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC
Confidence 2 3679999999999999886433 2345677766654444 333334555555432 22
Q ss_pred CC----ceeEecCC-----------------CCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCC---eeEEEec-C
Q 002494 531 LG----SRVDYDAP-----------------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG---AIKRTYS-G 585 (915)
Q Consensus 531 ~~----~~~~~~~~-----------------~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~-~ 585 (915)
+. .+..+... ..-++.+..|.|.++|.++.. ..|.++.||+.+. +.+.+.. +
T Consensus 280 g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W---~~GdvrqYDISDP~~Pkl~gqv~lG 356 (461)
T PF05694_consen 280 GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNW---LHGDVRQYDISDPFNPKLVGQVFLG 356 (461)
T ss_dssp TEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEET---TTTEEEEEE-SSTTS-EEEEEEE-B
T ss_pred CCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcc---cCCcEEEEecCCCCCCcEEeEEEEC
Confidence 21 11122110 235789999999999998876 5788999999763 3333221 1
Q ss_pred CC----------C----CceEEEEEcCCCCEEEEEe
Q 002494 586 FR----------K----RSLGVVQFDTTRNRFLAAG 607 (915)
Q Consensus 586 ~~----------~----~~v~~~~~sp~~~~l~s~~ 607 (915)
.. + ....-+..|.||++|+..+
T Consensus 357 G~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 357 GSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred cEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 00 0 0124567777887777654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=1.1 Score=53.28 Aligned_cols=245 Identities=9% Similarity=0.020 Sum_probs=123.0
Q ss_pred cCeEEEEEcCCCCEEEEEEC-----CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCC-----Cc
Q 002494 409 ISVNRCVWGPDGLMLGVAFS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KM 478 (915)
Q Consensus 409 ~~v~~~~~spd~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d-----~~ 478 (915)
-.+..+.|||||++|+.+.. ...|++.|+.++..+.. .+.+ .-..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~---~~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN---VEPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC---cceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 34667889999999987643 23688999988753321 1211 1145899999986 44443322 46
Q ss_pred EEEEEcCCC--eeEEEecCCCCCEEEEEeecCCCccEEEEEeC---CCeEEEEecCC--CCceeEecCCCCcEEEEEECC
Q 002494 479 IKVWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDY--LGSRVDYDAPGNWCTMMAYSA 551 (915)
Q Consensus 479 i~vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~iwd~~~--~~~~~~~~~~~~~i~~~~~sp 551 (915)
|+.+++.++ +....+........-..+.. .++.+++..+. ++.+.+++... ................+. +.
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s-~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 278 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFYVSLHKT-TSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY 278 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEEEEEEEc-CCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC
Confidence 888888887 33334443333333222222 24455444333 35688888533 222222222222222222 22
Q ss_pred CCCEEEEEeecCCCCceEEEEECCC-CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEEEEcCC
Q 002494 552 DGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDAD 629 (915)
Q Consensus 552 ~g~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~ 629 (915)
+..+...+..+.....|...++.+ ++....+.......+..+.+. .+..+++...+|.-+++-+.. +..+..+...
T Consensus 279 -~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~ 356 (686)
T PRK10115 279 -QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAFD 356 (686)
T ss_pred -CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecCC
Confidence 344444332222344565556652 332222333233367777776 334445555666655544332 2334444321
Q ss_pred CCCCCcceEEEc--CCCC-EEEEEeC---CCcEEEEEcCCC
Q 002494 630 GGLPASPRLRFN--KEGS-LLAVTTS---DNGIKILANSDG 664 (915)
Q Consensus 630 ~~~~~v~~v~~s--~~~~-~l~s~~~---dg~i~iwd~~~~ 664 (915)
.. ..+..+.++ +++. ++++.+. -+.+..+|..++
T Consensus 357 ~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 357 DP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 11 122333344 3333 4444433 467888888876
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.13 Score=55.08 Aligned_cols=217 Identities=14% Similarity=0.107 Sum_probs=118.8
Q ss_pred CcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCC----CCEEEEEEC---------C-CeEEE
Q 002494 369 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLMLGVAFS---------K-HIVHL 434 (915)
Q Consensus 369 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd----~~~l~s~~~---------d-g~i~v 434 (915)
+.|++.|..+.+.+....+ .. ..+-..+..+.+..+ ..+|++|+. . |.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l-----~~----------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFEL-----EP----------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEE-----ET----------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEEC-----CC----------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence 3578888877776543221 10 112222333444443 467777753 2 89999
Q ss_pred EEecCC----CceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCe-eEEEe-cCCCCCEEEEEeecC
Q 002494 435 YTYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTF-EGHEAPVYSVCPHHK 508 (915)
Q Consensus 435 wd~~~~----~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~-~~~~~~v~~i~~~~~ 508 (915)
+++... ..++.... ....++|++++-- +. .++.+. .+.|.+|++...+ ....- ......+.++...
T Consensus 67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~--~~--~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-- 138 (321)
T PF03178_consen 67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF--NG--RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-- 138 (321)
T ss_dssp EEECSS-----EEEEEEE-EEESS-EEEEEEE--TT--EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred EEEEcccccceEEEEEEE-EeecCcceEhhhh--CC--EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence 999884 23332222 2357789988876 33 333333 4789999998877 33322 2233466666554
Q ss_pred CCccEEEEEeCCCeEEEEecCCCCc-ee--EecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCC-------C-
Q 002494 509 ESIQFIFSTAIDGKIKAWLYDYLGS-RV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-------G- 577 (915)
Q Consensus 509 ~~~~~l~s~~~dg~i~iwd~~~~~~-~~--~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~-------~- 577 (915)
+ ++++.|.....+.++.++.... .. ........++++.+-++++.++.+. .++.+.++.... +
T Consensus 139 ~--~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D----~~gnl~~l~~~~~~~~~~~~~ 212 (321)
T PF03178_consen 139 K--NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD----KDGNLFVLRYNPEIPNSRDGD 212 (321)
T ss_dssp T--TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE----TTSEEEEEEE-SS-SSTTTTT
T ss_pred c--cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc----CCCeEEEEEECCCCccccccc
Confidence 2 5899999888888876554322 22 2233445788999987777666553 366677776542 2
Q ss_pred -eeEEEecCCCCCceEEE---EEcC--CCC------EEEEEeCCCcEEE
Q 002494 578 -AIKRTYSGFRKRSLGVV---QFDT--TRN------RFLAAGDEFQIKF 614 (915)
Q Consensus 578 -~~~~~~~~~~~~~v~~~---~~sp--~~~------~l~s~~~dg~i~i 614 (915)
+......-|-+..|+++ ++.| .+. .++.++.+|.|..
T Consensus 213 ~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 213 PKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 23333333444467766 4445 222 3677778888773
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0032 Score=68.42 Aligned_cols=77 Identities=18% Similarity=0.301 Sum_probs=67.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcc-eEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 002494 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP-RLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668 (915)
Q Consensus 590 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 668 (915)
.+..+.|+|.-..+|.+..+|.|.+..++ .+.+.+++.++. .++ +++|.|||+.||+|-.||+|++.|+.++..+.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~--~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGE--NVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCC--ccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 56778999999999999999999999998 788888887765 455 99999999999999999999999999995443
Q ss_pred e
Q 002494 669 R 669 (915)
Q Consensus 669 ~ 669 (915)
.
T Consensus 99 ~ 99 (665)
T KOG4640|consen 99 S 99 (665)
T ss_pred c
Confidence 3
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0032 Score=68.42 Aligned_cols=95 Identities=18% Similarity=0.416 Sum_probs=73.6
Q ss_pred CCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeE-EEEEcCCCCEEE
Q 002494 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN-RCVWGPDGLMLG 424 (915)
Q Consensus 346 ~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~spd~~~l~ 424 (915)
...|.-+.|+|.-. ++|.+..+|.|.+..+. -+ ++|++. -|...++ +++|.|||+.||
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~q-------Rlwtip------------~p~~~v~~sL~W~~DGklla 78 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQ-------RLWTIP------------IPGENVTASLCWRPDGKLLA 78 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec-cc-------eeEecc------------CCCCccceeeeecCCCCEEE
Confidence 45788999999987 89999999999998877 33 455542 2445555 999999999999
Q ss_pred EEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEec
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~ 463 (915)
+|-.||+|++.|++++..+... ...-...|.++.|++
T Consensus 79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred EEecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 9999999999999998766532 112345788888864
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.023 Score=60.67 Aligned_cols=145 Identities=12% Similarity=0.092 Sum_probs=93.9
Q ss_pred CCCEEEE-EECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEE-----EEEEeCCCcEEEEEcCC-Ce-eE
Q 002494 419 DGLMLGV-AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC-----IVTCGDDKMIKVWDVVA-GR-KQ 490 (915)
Q Consensus 419 d~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~-----l~s~~~d~~i~vwd~~~-~~-~~ 490 (915)
+.++|+. +.....++-.|++.|+.+. ...-+.. |+-+.+.|+.+..- -+.|-.|+.|.-||.+- ++ .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 4444443 4455678888999987766 3333443 77778887654211 13466788899999873 22 22
Q ss_pred EEecCCC----CCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCC
Q 002494 491 YTFEGHE----APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (915)
Q Consensus 491 ~~~~~~~----~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~ 566 (915)
...++|. ....|.+- ..+ .+|+.||.+|.||+||--.......+.+-+.+|..+..+.+|++|+..+ +
T Consensus 420 ~~~q~kqy~~k~nFsc~aT--T~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFAT--TES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K 491 (644)
T ss_pred eeeeccccccccccceeee--cCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence 2222222 22333333 334 3899999999999999643344445677788999999999999998765 5
Q ss_pred ceEEEEECC
Q 002494 567 SHLVEWNES 575 (915)
Q Consensus 567 ~~i~~wd~~ 575 (915)
..+.+.+..
T Consensus 492 tyLlLi~t~ 500 (644)
T KOG2395|consen 492 TYLLLIDTL 500 (644)
T ss_pred cEEEEEEEe
Confidence 667777653
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.76 E-value=1.1 Score=48.59 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=58.7
Q ss_pred EEEEcCCCCEEEEEECCCeEEE---EEecCCC---ceeee---EEeeccc-CCeeEEEEecC---C------CeEEEEEE
Q 002494 413 RCVWGPDGLMLGVAFSKHIVHL---YTYNPTG---ELRQH---LEIDAHV-GGVNDIAFAHP---N------KQLCIVTC 473 (915)
Q Consensus 413 ~~~~spd~~~l~s~~~dg~i~v---wd~~~~~---~~~~~---~~~~~h~-~~v~~~~~s~~---~------~~~~l~s~ 473 (915)
+++.+|++..||.+..+..+.+ |+..... ..... ..+.... ..|+++.|-|- . ...+++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999988776665 5432111 11111 1111111 46777766543 1 11289999
Q ss_pred eCCCcEEEEEcCCCeeEEEecCCCCCEEEEEee
Q 002494 474 GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (915)
Q Consensus 474 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 506 (915)
..+|.|++|. ++|..+..-.-|..+|..+.+.
T Consensus 86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEe-ccchHHHHHhcCccceEEEEec
Confidence 9999999999 5777665555678888877654
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.03 Score=59.85 Aligned_cols=145 Identities=11% Similarity=0.126 Sum_probs=98.9
Q ss_pred CCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEE-----EEEeCCCeEEEEecCCCCc-ee-Ee
Q 002494 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-----FSTAIDGKIKAWLYDYLGS-RV-DY 537 (915)
Q Consensus 465 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-----~s~~~dg~i~iwd~~~~~~-~~-~~ 537 (915)
...+++.++.....++-.|++.|+.+..+.-+.. |+-+.+.|+..+..+ +.|-.|..|.-||.+-... .. ..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3344666777778899999999999999987766 777777776654333 4566788899999885544 11 11
Q ss_pred c----CCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 002494 538 D----APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIK 613 (915)
Q Consensus 538 ~----~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~ 613 (915)
. .......|.+-..+| ++++++. +|-|++||.-..+....+++-.. +|..+..+.+|+++++.+.. .+.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~----~GdIRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc~t-yLl 495 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSL----KGDIRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATCKT-YLL 495 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeec----CCcEEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEeccc-EEE
Confidence 1 122355666666666 6777775 55599999733333344566555 89999999999998877654 566
Q ss_pred EEeC
Q 002494 614 FWDM 617 (915)
Q Consensus 614 iwd~ 617 (915)
+.++
T Consensus 496 Li~t 499 (644)
T KOG2395|consen 496 LIDT 499 (644)
T ss_pred EEEE
Confidence 6554
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.70 E-value=1 Score=48.92 Aligned_cols=83 Identities=12% Similarity=0.205 Sum_probs=59.4
Q ss_pred cEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCC-----------------CEEEE
Q 002494 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-----------------NRFLA 605 (915)
Q Consensus 543 ~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~-----------------~~l~s 605 (915)
.+.+++.+|++++.++. |.-|.|.++|+.++..++..+|..+..+.-+.....+ .+|+.
T Consensus 309 ~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred eEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 57889999998876664 3478899999999999999888776433322221111 12333
Q ss_pred -EeCCCcEEEEeCCCCceEEEEcCC
Q 002494 606 -AGDEFQIKFWDMDNMNMLTTVDAD 629 (915)
Q Consensus 606 -~~~dg~i~iwd~~~~~~~~~~~~~ 629 (915)
+-.-|.|.||.+++|..+..+...
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEEeC
Confidence 557889999999999888877653
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.19 Score=58.72 Aligned_cols=141 Identities=13% Similarity=0.039 Sum_probs=91.2
Q ss_pred CCEEEEE-ECCCeEEEEEecCCCceeeeEEeecccCC-eeEEEEecCCC------eEEEEEEeCCCcEEEEEcCCC--ee
Q 002494 420 GLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGG-VNDIAFAHPNK------QLCIVTCGDDKMIKVWDVVAG--RK 489 (915)
Q Consensus 420 ~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~------~~~l~s~~~d~~i~vwd~~~~--~~ 489 (915)
.++|+.. .....++-.|++.|+.+. .+..|... |..+ .|+.+ . -.+.|-.++.+..||.+-. ++
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~---eW~~~~~~~v~~~--~p~~K~aqlt~e-~tflGls~n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVE---EWKVHDDIPVVDI--APDSKFAQLTNE-QTFLGLSDNSLFRIDPRLSGNKL 566 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEE---EeecCCCcceeEe--cccccccccCCC-ceEEEECCCceEEeccCCCCCce
Confidence 3444433 345778999999998776 44444432 4444 34321 1 2456777889999998853 22
Q ss_pred EEE-ec--CCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCC
Q 002494 490 QYT-FE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (915)
Q Consensus 490 ~~~-~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~ 566 (915)
+.. .. .......|++-+. +| +|+.|+.+|.||+||--.......+.+-+.+|..+..+.||+++++.+ +
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~--~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-----~ 638 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTE--DG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-----K 638 (794)
T ss_pred eeccccccccCCCceEEEecC--Cc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-----c
Confidence 211 11 1234455665543 33 899999999999999543333445566678999999999999998766 5
Q ss_pred ceEEEEEC
Q 002494 567 SHLVEWNE 574 (915)
Q Consensus 567 ~~i~~wd~ 574 (915)
..+.+++.
T Consensus 639 tyLlLi~t 646 (794)
T PF08553_consen 639 TYLLLIDT 646 (794)
T ss_pred ceEEEEEE
Confidence 56888875
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.086 Score=60.59 Aligned_cols=154 Identities=14% Similarity=0.093 Sum_probs=87.0
Q ss_pred CCEEEEEeecCCCccEEEEEe------CCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeec--------C
Q 002494 498 APVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS--------K 563 (915)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~--------~ 563 (915)
..+.+.+++|++ +.++... .|+.-.+|-....+....+. .+...+.-.|+|||+.+++.... .
T Consensus 350 ~~vsspaiSpdG--~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSG--RQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-EGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCC--CEEEEEEeecCCCCCcceEEEEEeCCCcceeee-cCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 456777888754 4554443 24433444332222222222 22347888999999988776421 1
Q ss_pred CCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEE---EeCCCCceEEE-----EcCCCCCCCc
Q 002494 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF---WDMDNMNMLTT-----VDADGGLPAS 635 (915)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i---wd~~~~~~~~~-----~~~~~~~~~v 635 (915)
++.+.+++.++..+.... ...+ .|..+.|||||..++... +|+|++ -....|. ... +.. .-...+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g-~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~-~l~~~~ 499 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPG-PISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGP-GLGDTA 499 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCC-CcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeec-ccCCcc
Confidence 123445555555444322 1122 699999999999988866 477877 4444453 111 111 111135
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 002494 636 PRLRFNKEGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 636 ~~v~~s~~~~~l~s~~~dg~i~iwd~~ 662 (915)
.++.|..++.++ ++..++...+|.+.
T Consensus 500 ~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 500 VSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ccceEecCCEEE-EEecCCCCceEEEe
Confidence 789999998855 55555555556544
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.19 Score=42.77 Aligned_cols=102 Identities=14% Similarity=0.121 Sum_probs=66.1
Q ss_pred eEEEEEcC---CC-CEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCC
Q 002494 411 VNRCVWGP---DG-LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (915)
Q Consensus 411 v~~~~~sp---d~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~ 486 (915)
|+++++.. || +.|++|+.|..|++|+-+. .+. .+. ....|++++-...+ .|+.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~---Ei~-e~~~v~~L~~~~~~---~F~Y~l~NGTVGvY~~-- 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA---EIT-ETDKVTSLCSLGGG---RFAYALANGTVGVYDR-- 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE---EEe-cccceEEEEEcCCC---EEEEEecCCEEEEEeC--
Confidence 45555544 33 5899999999999998442 222 222 34578888877664 4888999999999984
Q ss_pred CeeEEEecCCCCCEEEEEe-ecCCCc-cEEEEEeCCCeEE
Q 002494 487 GRKQYTFEGHEAPVYSVCP-HHKESI-QFIFSTAIDGKIK 524 (915)
Q Consensus 487 ~~~~~~~~~~~~~v~~i~~-~~~~~~-~~l~s~~~dg~i~ 524 (915)
...+...+... .+.++++ ..+++| .-|++|-.+|.|-
T Consensus 71 ~~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 33344554333 3555543 333333 4688888888764
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.13 Score=43.69 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=64.7
Q ss_pred EEEEEEc---CCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEE
Q 002494 349 VMSMDFH---PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (915)
Q Consensus 349 V~~v~fs---pd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s 425 (915)
|++|++. -||+.-|++|+.|..|++|+-.. .+.+ -.....|.++.-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE--------------------ITETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence 4555554 46656688899999999998553 2321 114556777776665 67999
Q ss_pred EECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEe---cCCCeEEEEEEeCCCcEE
Q 002494 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA---HPNKQLCIVTCGDDKMIK 480 (915)
Q Consensus 426 ~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s---~~~~~~~l~s~~~d~~i~ 480 (915)
+..+|+|-+|+-.. + ....+. +..+.++.+. .||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~----R-lWRiKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQ----R-LWRIKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcc----e-eeeecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 99999999997532 1 112222 2235555543 33433 478888788764
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.22 Score=57.28 Aligned_cols=234 Identities=11% Similarity=0.013 Sum_probs=119.4
Q ss_pred CCCEEEEEECC------CeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCC------CcEEEEEcCC
Q 002494 419 DGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVA 486 (915)
Q Consensus 419 d~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d------~~i~vwd~~~ 486 (915)
.+..++.|+.+ ..+..||..++.-.. ...+. +...-.+++.. ++. ++++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~-~~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVL-NGK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEE-CCE--EEEEccccCCCcccceEEEecCCC
Confidence 34455666655 357788887753211 11221 22233444444 334 78888888 3577888877
Q ss_pred CeeEE--EecCCCCCEEEEEeecCCCccEEEEEeCCCe-----EEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEE
Q 002494 487 GRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGK-----IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (915)
Q Consensus 487 ~~~~~--~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~ 559 (915)
++... .+...........+ +|.+.++|+.||. +-.||..+.+-...-......-..-...-+|+..++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 66332 11111111111111 4578889998865 6677766544322211111111111222467777777
Q ss_pred eecCCCC--ceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceEEEEcCCCCC
Q 002494 560 GTSKEGE--SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDADGGL 632 (915)
Q Consensus 560 ~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~ 632 (915)
|.++..+ ..+..||..++.....-.-.....-..++. -++...+.||.|+ +|..||..+.+....-......
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence 7655432 578899988876544322222111122222 2567777788766 3778888876554432222111
Q ss_pred CCcceEEEcCCCCEEEEEeCCCc-----EEEEEcCCC
Q 002494 633 PASPRLRFNKEGSLLAVTTSDNG-----IKILANSDG 664 (915)
Q Consensus 633 ~~v~~v~~s~~~~~l~s~~~dg~-----i~iwd~~~~ 664 (915)
..+..+.+ ++...++|+.||. |..||..++
T Consensus 514 s~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 514 SAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 11212222 4677778876653 445554443
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=3 Score=49.57 Aligned_cols=242 Identities=9% Similarity=0.001 Sum_probs=122.2
Q ss_pred CEEEEEEcCCCCeEEEEEeCCC----cEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEE
Q 002494 348 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (915)
Q Consensus 348 ~V~~v~fspd~~~ll~~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l 423 (915)
.+..+.|||||++++++.+.+| .|++.|+.+|+.+.. .....-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~---------------------~i~~~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE---------------------LLDNVEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc---------------------cccCcceEEEEeeCCCEE
Confidence 4677889999997666544444 588999988764321 011111468999999877
Q ss_pred EEEECC------CeEEEEEecCCCc-eeeeEEeecccCCee-EEEEecCCCeEEEEEE--eCCCcEEEEEcC--CCeeEE
Q 002494 424 GVAFSK------HIVHLYTYNPTGE-LRQHLEIDAHVGGVN-DIAFAHPNKQLCIVTC--GDDKMIKVWDVV--AGRKQY 491 (915)
Q Consensus 424 ~s~~~d------g~i~vwd~~~~~~-~~~~~~~~~h~~~v~-~~~~s~~~~~~~l~s~--~~d~~i~vwd~~--~~~~~~ 491 (915)
+.+..+ ..|+.+++.++.. -.. .+........ .+..+.+++. +++.+ ..++.+.+++.. ++....
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l--v~~e~~~~~~~~~~~s~d~~~-l~i~~~~~~~~~~~l~~~~~~~~~~~~ 263 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL--VYEEKDDTFYVSLHKTTSKHY-VVIHLASATTSEVLLLDAELADAEPFV 263 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE--EEeeCCCCEEEEEEEcCCCCE-EEEEEECCccccEEEEECcCCCCCceE
Confidence 766442 3688888887632 111 2222222333 3333447774 23332 233578888843 343222
Q ss_pred EecCCCCCEEEEEeecCCCccEEEEEeCC---CeEEEEecCCCCc-eeEecC-CCCcEEEEEECCCCCEEEEEeecCCCC
Q 002494 492 TFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGS-RVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGE 566 (915)
Q Consensus 492 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~-~~~~~~-~~~~i~~~~~sp~g~~l~~~~~~~~~~ 566 (915)
.+.........+. +.. + .+++....+ ..|...++..... ...+.. ....+..+.++ +++|+..... ++.
T Consensus 264 ~~~~~~~~~~~~~-~~~-~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~ 337 (686)
T PRK10115 264 FLPRRKDHEYSLD-HYQ-H-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGL 337 (686)
T ss_pred EEECCCCCEEEEE-eCC-C-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCE
Confidence 2221122222222 222 2 333333222 2344444442222 222332 23367778876 4455554432 345
Q ss_pred ceEEEEECCCCeeEEEec-CCCCCceEEEEEc--CCCC-EEEEEe---CCCcEEEEeCCCCc
Q 002494 567 SHLVEWNESEGAIKRTYS-GFRKRSLGVVQFD--TTRN-RFLAAG---DEFQIKFWDMDNMN 621 (915)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~s--p~~~-~l~s~~---~dg~i~iwd~~~~~ 621 (915)
..+++++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|+.+++
T Consensus 338 ~~l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 338 TSLRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 667777765443 34333 2221 23333344 4444 444433 45679999998764
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0081 Score=39.98 Aligned_cols=36 Identities=31% Similarity=0.642 Sum_probs=30.2
Q ss_pred EEEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 002494 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWE 375 (915)
Q Consensus 339 ~~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd 375 (915)
....+. |...|.++.|+|++. ++++|+.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 444555 788999999999986 688899999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.45 E-value=1.2 Score=44.80 Aligned_cols=184 Identities=15% Similarity=0.058 Sum_probs=113.6
Q ss_pred CeeEEEEecCCCeEEEEEEeCCC--cEEEEEcCCCeeEEEecC-CCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCC
Q 002494 455 GVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (915)
Q Consensus 455 ~v~~~~~s~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 531 (915)
-...+.|..+|. ++-+.+.-| .|+.+|+.+++......- ..-.--.++... + +...-.-.++...+||.++.
T Consensus 46 FTQGL~~~~~g~--LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d-~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 46 FTQGLEFLDDGT--LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--D-KLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp EEEEEEEEETTE--EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--T-EEEEEESSSSEEEEEETTTT
T ss_pred cCccEEecCCCE--EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--C-EEEEEEecCCeEEEEccccc
Confidence 455677877776 677776665 699999999987655432 222223444432 2 45666677899999999987
Q ss_pred CceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCC----CceEEEEEcCCCCEEEEEe
Q 002494 532 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAG 607 (915)
Q Consensus 532 ~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~s~~ 607 (915)
+....+...+ .=..++ .||+.|+.+. |...++.+|..+.+..+.+....+ ..++-+.|- +|...|=.-
T Consensus 121 ~~~~~~~y~~-EGWGLt--~dg~~Li~SD----GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW 192 (264)
T PF05096_consen 121 KKIGTFPYPG-EGWGLT--SDGKRLIMSD----GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW 192 (264)
T ss_dssp EEEEEEE-SS-S--EEE--ECSSCEEEE-----SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred eEEEEEecCC-cceEEE--cCCCEEEEEC----CccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence 7776665432 334455 5677776653 467799999988877776654322 145567775 555444455
Q ss_pred CCCcEEEEeCCCCceEEEEcC---------C----CCCCCcceEEEcCCCCEEEEEe
Q 002494 608 DEFQIKFWDMDNMNMLTTVDA---------D----GGLPASPRLRFNKEGSLLAVTT 651 (915)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~---------~----~~~~~v~~v~~s~~~~~l~s~~ 651 (915)
....|...|..+|+.+..+.. . ......+.++|+|..+.+...|
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 666899999999998887732 0 1123578999999666555444
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0096 Score=39.59 Aligned_cols=38 Identities=26% Similarity=0.484 Sum_probs=32.4
Q ss_pred eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 002494 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (915)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 616 (915)
+.+..+..|.. .+.++.|++++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTG-PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCC-ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566666666 899999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.5 Score=54.42 Aligned_cols=186 Identities=10% Similarity=0.023 Sum_probs=95.7
Q ss_pred CCeeEEEEecCCCeEEEEEEe-----CCC--cEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCC------
Q 002494 454 GGVNDIAFAHPNKQLCIVTCG-----DDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID------ 520 (915)
Q Consensus 454 ~~v~~~~~s~~~~~~~l~s~~-----~d~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------ 520 (915)
..+.+.+++|+|+. ..++.. .|+ .+.+++. .+.. ..+.. ......-.|+|++ ..+.+....
T Consensus 350 ~~vsspaiSpdG~~-vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG--~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQ-VAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDA--DAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCE-EEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCC--CceEEEecCcceEEE
Confidence 46789999999996 333331 233 4555554 2222 22221 1236667787753 445554322
Q ss_pred ------CeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEE---EECCCCee-E---EEecCCC
Q 002494 521 ------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE---WNESEGAI-K---RTYSGFR 587 (915)
Q Consensus 521 ------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~---wd~~~~~~-~---~~~~~~~ 587 (915)
+.+.+.+++...... .....|..+.|||||++++... ++.|++ -....|.. + ..+....
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-----~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l 495 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-----GGKVYLAVVEQTEDGQYALTNPREVGPGL 495 (591)
T ss_pred eccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-----CCEEEEEEEEeCCCCceeecccEEeeccc
Confidence 233333333222211 2245699999999999998765 345666 44444541 1 1122222
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 002494 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (915)
Q Consensus 588 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i 656 (915)
...+..+.|..++.++ ++..++...+|.+.- |.....+....-...+..++=+++ .++....+|.+
T Consensus 496 ~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 496 GDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred CCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 2145778999988854 555444444554432 222222233222335556665552 34455555533
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.6 Score=44.24 Aligned_cols=212 Identities=15% Similarity=0.134 Sum_probs=124.3
Q ss_pred CeeEEEEecCCCeEEEEEEeCCCcEEEEEcC------CC-eeEEEecC-----CCCCEEEEEeecCCC----------cc
Q 002494 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV------AG-RKQYTFEG-----HEAPVYSVCPHHKES----------IQ 512 (915)
Q Consensus 455 ~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~------~~-~~~~~~~~-----~~~~v~~i~~~~~~~----------~~ 512 (915)
.-+.++++|.+. +.++....+...+||.. .. ..+.++.. .....+.+.|+.... .-
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 468899999998 78888888899999976 11 22334331 223566676654321 12
Q ss_pred EEEEEeCCCeEEEEecCCCCc-----eeEecC--CCCcEEEEEECC--CCCEEEEEeecCCCCceEEEEECCCCeeEE--
Q 002494 513 FIFSTAIDGKIKAWLYDYLGS-----RVDYDA--PGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWNESEGAIKR-- 581 (915)
Q Consensus 513 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~~--~~~~i~~~~~sp--~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~-- 581 (915)
.++.+++||+|.-|.-..... ...+.. ...-...+++.. .+.+|..+-. ..++|.++|-.-.+...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 468889999999997432222 122221 122334455543 3567766654 36778888854322210
Q ss_pred EecCCC---CC------------ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcC----
Q 002494 582 TYSGFR---KR------------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK---- 642 (915)
Q Consensus 582 ~~~~~~---~~------------~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 642 (915)
.+.... +. .|+-..-.+++..=+.|..-|.|-+||.. |+.++++...+....-+.++..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhC
Confidence 011100 00 11111112222222233345789999986 78888887666555677888766
Q ss_pred --CCCEEEEEeCCCcEEEEEcCCCceeeeeccC
Q 002494 643 --EGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (915)
Q Consensus 643 --~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 673 (915)
.|.+|+---.||+|..||..++ +.+-.+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSG-AQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCC-ceeeeecC
Confidence 4667776667999999999988 44444443
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.19 E-value=2.3 Score=45.52 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=39.4
Q ss_pred ceEEEEEcC-------CCCEEEEEeCCCcEEEEeCCCCceEEEE-cCCCCC-CCcceEEEcCCCCEEEEEeCCCcEE
Q 002494 590 SLGVVQFDT-------TRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGL-PASPRLRFNKEGSLLAVTTSDNGIK 657 (915)
Q Consensus 590 ~v~~~~~sp-------~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~-~~v~~v~~s~~~~~l~s~~~dg~i~ 657 (915)
.+..+.|.. .|.++++.-..+.|....+..+..+... ..-... ..+..+++.|||.+.++-..+|.|.
T Consensus 254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 455555543 3445555555667887777654333222 111222 2688999999999888888888774
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.34 Score=55.97 Aligned_cols=187 Identities=7% Similarity=0.022 Sum_probs=92.2
Q ss_pred EEEEEeCC------CcEEEEEcCCCeeEE--EecCCCCCEEEEEeecCCCccEEEEEeCCC-----eEEEEecCCCCcee
Q 002494 469 CIVTCGDD------KMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYLGSRV 535 (915)
Q Consensus 469 ~l~s~~~d------~~i~vwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~ 535 (915)
+++.||.+ ..+..||..+..... .+....... +++.. ++.+.+.||.++ .+..||..+..-..
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~~---~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAVI---DDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEEE---CCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 56667653 347788887764321 111111111 12211 346777787754 47788877653222
Q ss_pred EecCC--CCcEEEEEECCCCCEEEEEeecCCC-------------------CceEEEEECCCCeeEEEecCCCCCceEEE
Q 002494 536 DYDAP--GNWCTMMAYSADGTRLFSCGTSKEG-------------------ESHLVEWNESEGAIKRTYSGFRKRSLGVV 594 (915)
Q Consensus 536 ~~~~~--~~~i~~~~~sp~g~~l~~~~~~~~~-------------------~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 594 (915)
.-... ......++ -+|+..+.||.+... ...+..||..+.+....-.-... .....
T Consensus 382 ~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~~~ 458 (557)
T PHA02713 382 LPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIRPG 458 (557)
T ss_pred CCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc-cccCc
Confidence 11111 11111222 356666666643210 24578899887665332211111 11111
Q ss_pred EEcCCCCEEEEEeCC------CcEEEEeCCC-CceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCC--cEEEEEcCCC
Q 002494 595 QFDTTRNRFLAAGDE------FQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN--GIKILANSDG 664 (915)
Q Consensus 595 ~~sp~~~~l~s~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg--~i~iwd~~~~ 664 (915)
...-+|+..+.||.+ ..+..||..+ .+-...-...........+.+ +|++.++||.|| .+..||..++
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 122256666777654 2467899886 443322221111112222222 688889999888 6777777766
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.01 E-value=3.1 Score=45.43 Aligned_cols=277 Identities=12% Similarity=0.159 Sum_probs=145.6
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC-----CCCEEEEEECCC
Q 002494 356 PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-----DGLMLGVAFSKH 430 (915)
Q Consensus 356 pd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----d~~~l~s~~~dg 430 (915)
++++..+++|+..|.++||+...++......+ +-..-..+|..++.-+ +...||+ -.-.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~ll---------------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~ 97 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLL---------------LETQLKDPILQVECGKFVSGSEDLQLAV-LHPR 97 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEE---------------EEEecCCcEEEEEeccccCCCCcceEEE-ecCC
Confidence 34444678899999999999865442211000 0122345666666432 2234444 4456
Q ss_pred eEEEEEecCCCc------eeeeEEeecccC--CeeEEEEec----CCCeEEEEEEeCCCcEEEEEcCCCeeEEEecC--C
Q 002494 431 IVHLYTYNPTGE------LRQHLEIDAHVG--GVNDIAFAH----PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--H 496 (915)
Q Consensus 431 ~i~vwd~~~~~~------~~~~~~~~~h~~--~v~~~~~s~----~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~ 496 (915)
.+.||.+..... ......+..|.- ....+++-| .++. ++..-+.||.+.+++-+.-.....+.. .
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCCC
Confidence 788888732211 011112223322 223333322 2233 788889999999999554332333332 3
Q ss_pred CCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCc-------------------e----eEecCCCC---cEEEEEEC
Q 002494 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-------------------R----VDYDAPGN---WCTMMAYS 550 (915)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------------------~----~~~~~~~~---~i~~~~~s 550 (915)
.++ +++.+.. ..+++++.+..+..|....... . ..+. -+. .+..+.++
T Consensus 177 PgP---l~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~ 250 (418)
T PF14727_consen 177 PGP---LCYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFS 250 (418)
T ss_pred CcC---eEEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcC
Confidence 343 4555554 4788888888888886421100 0 0111 111 23333443
Q ss_pred CCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEE------cCCC-CEEEEEeCCCcEEEEeCCCCceE
Q 002494 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF------DTTR-NRFLAAGDEFQIKFWDMDNMNML 623 (915)
Q Consensus 551 p~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~------sp~~-~~l~s~~~dg~i~iwd~~~~~~~ 623 (915)
.....+++-+ ...+.+.+. +|......+-.-. +.....+ .|+. ..++.++.++++.||.=. +++
T Consensus 251 ~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krLd~~-p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~ 321 (418)
T PF14727_consen 251 SSESDIVVLG-----ERSLFCLKD-NGSLRFQKRLDYN-PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLV 321 (418)
T ss_pred CCCceEEEEe-----cceEEEEcC-CCeEEEEEecCCc-eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEE
Confidence 3333444443 555777775 3654443332211 2222222 1221 248889999999998643 455
Q ss_pred EEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 624 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
+.-........+....|..-...|++-+.+|.+.+--+.|.
T Consensus 322 WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 322 WSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 55544332112333334444568888899999999888776
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.6 Score=53.92 Aligned_cols=193 Identities=6% Similarity=-0.085 Sum_probs=93.2
Q ss_pred CCCEEEEEECC------CeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCC-----cEEEEEcCCC
Q 002494 419 DGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-----MIKVWDVVAG 487 (915)
Q Consensus 419 d~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~-----~i~vwd~~~~ 487 (915)
++...+.||.+ ..+..||..++.- .....+.........+. -+|. +.+.||.++ ++..||..+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~~~~~--~~g~--IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRFSLAV--IDDT--IYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhceeEEE--ECCE--EEEECCcCCCCCCceEEEEECCCC
Confidence 66777777753 3477888776431 11111111111122222 2455 667777653 4788998776
Q ss_pred eeEE--EecCCCCCEEEEEeecCCCccEEEEEeCCC-----------------------eEEEEecCCCCceeEecCCCC
Q 002494 488 RKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDG-----------------------KIKAWLYDYLGSRVDYDAPGN 542 (915)
Q Consensus 488 ~~~~--~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~ 542 (915)
+... .+.........+.+ ++.+.+.|+.++ .+..||..+.+-...-.....
T Consensus 378 ~W~~~~~mp~~r~~~~~~~~----~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~ 453 (557)
T PHA02713 378 KWKMLPDMPIALSSYGMCVL----DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG 453 (557)
T ss_pred eEEECCCCCcccccccEEEE----CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc
Confidence 4322 11111111111222 346777777653 366677665432221111111
Q ss_pred cEEEEEECCCCCEEEEEeecCCC--CceEEEEECCC-CeeE--EEecCCCCCceEEEEEcCCCCEEEEEeCCC--cEEEE
Q 002494 543 WCTMMAYSADGTRLFSCGTSKEG--ESHLVEWNESE-GAIK--RTYSGFRKRSLGVVQFDTTRNRFLAAGDEF--QIKFW 615 (915)
Q Consensus 543 ~i~~~~~sp~g~~l~~~~~~~~~--~~~i~~wd~~~-~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg--~i~iw 615 (915)
........-+|+..+.|+.++.. ...+..||..+ .+.. ..+..... ....+.+ +|+..++||.+| .+..|
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~~~~~~~--~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-ALHTILH--DNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-cceeEEE--CCEEEEEeeecceeehhhc
Confidence 11111122345555566543211 13467899887 4443 33332222 2223333 678888898888 67777
Q ss_pred eCCCCceE
Q 002494 616 DMDNMNML 623 (915)
Q Consensus 616 d~~~~~~~ 623 (915)
|..+.+-.
T Consensus 531 d~~~~~W~ 538 (557)
T PHA02713 531 NVYTYEWN 538 (557)
T ss_pred Cccccccc
Confidence 77765543
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.88 E-value=2 Score=51.14 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=96.8
Q ss_pred EEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEE-------------EEEeecCCCccEEEEEeC----------CCeEEE
Q 002494 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY-------------SVCPHHKESIQFIFSTAI----------DGKIKA 525 (915)
Q Consensus 469 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-------------~i~~~~~~~~~~l~s~~~----------dg~i~i 525 (915)
.++.++.|+.+.-.|..+|+....+. ..+.|. .+.-.|--.+..++.|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 47778889999999999999887763 222221 001011001135666643 688999
Q ss_pred EecCCCCceeEecCC---------CC--------cE-EEEEECCCCCEEEEEeec--------------CCCCceEEEEE
Q 002494 526 WLYDYLGSRVDYDAP---------GN--------WC-TMMAYSADGTRLFSCGTS--------------KEGESHLVEWN 573 (915)
Q Consensus 526 wd~~~~~~~~~~~~~---------~~--------~i-~~~~~sp~g~~l~~~~~~--------------~~~~~~i~~wd 573 (915)
+|.++++..-.+... .+ .+ ..++++++...++..... ..-.+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 999998877655321 00 11 234556655555543210 01235677889
Q ss_pred CCCCeeEEEecC-CCCC-------ceEEEEEcC-CCC---EEEEEeCCCcEEEEeCCCCceEEEEcC
Q 002494 574 ESEGAIKRTYSG-FRKR-------SLGVVQFDT-TRN---RFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (915)
Q Consensus 574 ~~~~~~~~~~~~-~~~~-------~v~~~~~sp-~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~ 628 (915)
.++|+.+-.++. |++. ...-+.+.. +|+ .++.++.+|.+++.|.++|+.+...+.
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 999999888765 3210 111122322 553 788899999999999999998876543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.035 Score=39.19 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=29.3
Q ss_pred CCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCc
Q 002494 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE 380 (915)
Q Consensus 346 ~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~ 380 (915)
...|.+++|+|..+ ++|.|+.+|.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCc
Confidence 56799999999998 8999999999999998 444
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.13 Score=60.08 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=73.6
Q ss_pred CCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCC
Q 002494 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (915)
Q Consensus 419 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 498 (915)
.+..++.|+..|.+-..|+.+. +.....-..-.++|++++|+.+|. +++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4567888999999988887663 111111122356899999999999 788899999999999999999998888887
Q ss_pred CEEEEEeec-CCCccEEEEEeCCCe
Q 002494 499 PVYSVCPHH-KESIQFIFSTAIDGK 522 (915)
Q Consensus 499 ~v~~i~~~~-~~~~~~l~s~~~dg~ 522 (915)
+.+++-+.. .+++..++++...|.
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc
Confidence 777664432 223346778777776
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.75 E-value=2.6 Score=42.44 Aligned_cols=186 Identities=10% Similarity=0.027 Sum_probs=114.1
Q ss_pred ccCeEEEEEcCCCCEEEEEECCC--eEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcC
Q 002494 408 AISVNRCVWGPDGLMLGVAFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (915)
Q Consensus 408 ~~~v~~~~~spd~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~ 485 (915)
..-...+.|..+|.++-+.+.-| .|+.+|+.+++..... .+.. .----.++.. ++. ++...=.++...+||..
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~-~l~~-~~FgEGit~~--~d~-l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV-PLPP-RYFGEGITIL--GDK-LYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE-E-TT-T--EEEEEEE--TTE-EEEEESSSSEEEEEETT
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE-ECCc-cccceeEEEE--CCE-EEEEEecCCeEEEEccc
Confidence 34456788878888888887766 6899999998765432 2321 1122334443 233 44555678899999999
Q ss_pred CCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCC--C---CcEEEEEECCCCCEEEEEe
Q 002494 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--G---NWCTMMAYSADGTRLFSCG 560 (915)
Q Consensus 486 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~---~~i~~~~~sp~g~~l~~~~ 560 (915)
+-+.+.++. ....=+.++. +++.|+.+.-...++++|..+.+....+... + ..++.+.|- +|...|-.-
T Consensus 119 tl~~~~~~~-y~~EGWGLt~----dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW 192 (264)
T PF05096_consen 119 TLKKIGTFP-YPGEGWGLTS----DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW 192 (264)
T ss_dssp TTEEEEEEE--SSS--EEEE----CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred cceEEEEEe-cCCcceEEEc----CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence 998888886 4456677773 3456777766778999998877665544322 1 245666664 564444332
Q ss_pred ecCCCCceEEEEECCCCeeEEEecC-----------C---CCCceEEEEEcCCCCEEEEEeC
Q 002494 561 TSKEGESHLVEWNESEGAIKRTYSG-----------F---RKRSLGVVQFDTTRNRFLAAGD 608 (915)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~-----------~---~~~~v~~~~~sp~~~~l~s~~~ 608 (915)
....|...|..+|+.+..+.. . .....+.++++|..+.|+..|.
T Consensus 193 ----~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 193 ----QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp ----TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred ----CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 255688999999998876521 0 1236899999998887777663
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=2.8 Score=42.30 Aligned_cols=169 Identities=12% Similarity=0.114 Sum_probs=104.8
Q ss_pred CCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEc
Q 002494 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (915)
Q Consensus 405 ~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~ 484 (915)
.+-...+.++.|+|+.+.|.+......-.|+=-..|+.++.. .+.+ -...-.+.+..+|. +.++--.++.+.++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-PL~g-~~DpE~Ieyig~n~--fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-PLTG-FSDPETIEYIGGNQ--FVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-cccc-cCChhHeEEecCCE--EEEEehhcceEEEEEE
Confidence 344455999999999999988888777777766666666543 4444 23456678887777 7777778888888877
Q ss_pred CCCeeEEE-------ec--CC-CCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEec---CC-------CCcE
Q 002494 485 VAGRKQYT-------FE--GH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---AP-------GNWC 544 (915)
Q Consensus 485 ~~~~~~~~-------~~--~~-~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~-------~~~i 544 (915)
..+..+.. +. .+ ....-.++|.+.. +.++.+-.-.-+.||.+.......... .+ -..+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~--~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD--HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCC--ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 65432221 11 12 4556788998764 567777776677777655322111110 11 1246
Q ss_pred EEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEe
Q 002494 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (915)
Q Consensus 545 ~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (915)
.++.|++....+++-+. +.+.+.-.|.. |..+..+
T Consensus 236 Sgl~~~~~~~~LLVLS~---ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 236 SGLEFNAITNSLLVLSD---ESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred ccceecCCCCcEEEEec---CCceEEEEecC-CCeeeeE
Confidence 77788876655555442 35667677755 4444433
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.071 Score=62.03 Aligned_cols=102 Identities=19% Similarity=0.240 Sum_probs=70.0
Q ss_pred EEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCC
Q 002494 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT 440 (915)
Q Consensus 361 ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~ 440 (915)
.++.|+..|.|-..|+.+.-.... | -..-.++|++++|+.||+.++.|-.+|.|.+||...+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~-----~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLH-----Q-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhh-----c-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 467788899999988876421000 0 1235679999999999999999999999999999998
Q ss_pred CceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEc
Q 002494 441 GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (915)
Q Consensus 441 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~ 484 (915)
+.++...........|..+.+..++. .++++...|. +|.+
T Consensus 163 k~l~~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILKVITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceeeeeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence 77663322212222344445555555 5778777776 5554
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.47 E-value=5.4 Score=44.26 Aligned_cols=151 Identities=11% Similarity=0.051 Sum_probs=87.8
Q ss_pred CCeeEEEEecCCCeEEEEEEe--CCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCC--ccEEEEEeCCCeEEEEecC
Q 002494 454 GGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES--IQFIFSTAIDGKIKAWLYD 529 (915)
Q Consensus 454 ~~v~~~~~s~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~--~~~l~s~~~dg~i~iwd~~ 529 (915)
.++..++|. ||++ ++.|.- .+|.+++= +.+.+..|+ .|..++|.|-.. ...+++......|.+|.+.
T Consensus 20 HPvhGlaWT-DGkq-VvLT~L~l~~gE~kfG---ds~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQ-VVLTDLQLHNGEPKFG---DSKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCE-EEEEeeeeeCCccccC---CccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 378899996 7876 555542 33444332 223444443 588889987532 2356777788899999875
Q ss_pred CC-----CceeEecCC---CC--cEEEEEECCCCCEEEEEeecCCCCceEEEEECCC--CeeEEEecCCCCCceEEEEEc
Q 002494 530 YL-----GSRVDYDAP---GN--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE--GAIKRTYSGFRKRSLGVVQFD 597 (915)
Q Consensus 530 ~~-----~~~~~~~~~---~~--~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~--~~~~~~~~~~~~~~v~~~~~s 597 (915)
.. +.......+ .. --..+.|+|....|++-+. .|- -.+++++. .+....+.+ .+ .|.|.+|.
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~---~dv-SV~~sV~~d~srVkaDi~~-~G-~IhCACWT 164 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA---RDV-SVLPSVHCDSSRVKADIKT-SG-LIHCACWT 164 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec---Cce-eEeeeeeeCCceEEEeccC-Cc-eEEEEEec
Confidence 22 111111110 11 1245689999888776553 122 23444432 233333433 23 89999999
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCC
Q 002494 598 TTRNRFLAAG-DEFQIKFWDMDN 619 (915)
Q Consensus 598 p~~~~l~s~~-~dg~i~iwd~~~ 619 (915)
+||++|+++- ..=.-+|||-..
T Consensus 165 ~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 165 KDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CcCCEEEEEeCCeEEEEEecCch
Confidence 9999887743 333568898654
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.43 E-value=2.5 Score=40.85 Aligned_cols=144 Identities=10% Similarity=0.058 Sum_probs=79.3
Q ss_pred cCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCC--------CCEEEEEeecCCCccEEEEEeCCCeEE
Q 002494 453 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE--------APVYSVCPHHKESIQFIFSTAIDGKIK 524 (915)
Q Consensus 453 ~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--------~~v~~i~~~~~~~~~~l~s~~~dg~i~ 524 (915)
....++-..+|+|+ + +.|...-.=..+....+....-+.+|. .--+.++|..+. ..+.++-+.+-+|.
T Consensus 108 knR~NDgkvdP~Gr--y-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~-K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--Y-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDA-KKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCc--e-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccC-cEEEEEccCceEEe
Confidence 34566778889998 4 334321111122222222222222232 223456676432 24556666777888
Q ss_pred EEecC--CCC-----ceeEecC---CCC-cEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEE
Q 002494 525 AWLYD--YLG-----SRVDYDA---PGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV 593 (915)
Q Consensus 525 iwd~~--~~~-----~~~~~~~---~~~-~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 593 (915)
-||.+ ++. .+..+.. ... ..-.++...+|+..+++-. .++|...|..+|+.+.++.-... .+++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~-qits 258 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTP-QITS 258 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCC-ceEE
Confidence 88843 221 1111111 011 1223455667777666653 66799999999999999988776 8999
Q ss_pred EEEcC-CCCEEEE
Q 002494 594 VQFDT-TRNRFLA 605 (915)
Q Consensus 594 ~~~sp-~~~~l~s 605 (915)
++|.- +-..+++
T Consensus 259 ccFgGkn~d~~yv 271 (310)
T KOG4499|consen 259 CCFGGKNLDILYV 271 (310)
T ss_pred EEecCCCccEEEE
Confidence 99963 3344444
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=1.1 Score=51.63 Aligned_cols=232 Identities=11% Similarity=0.045 Sum_probs=113.2
Q ss_pred eEEEEEeCCC------cEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECC----
Q 002494 360 TILLVGTNVG------DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK---- 429 (915)
Q Consensus 360 ~ll~~gs~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~d---- 429 (915)
.+++.|+.++ .+..+|..+++...-.. +. ....-.+++.. ++...++||.|
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~-----------------m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~ 346 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP-----------------MP-SPRCRVGVAVL-NGKLYVVGGYDSGSD 346 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCC-----------------CC-cccccccEEEE-CCEEEEEccccCCCc
Confidence 3666776663 57788887764332111 11 11122233333 45778888888
Q ss_pred --CeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCc-----EEEEEcCCCeeEEEecCCCCCEEE
Q 002494 430 --HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-----IKVWDVVAGRKQYTFEGHEAPVYS 502 (915)
Q Consensus 430 --g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~-----i~vwd~~~~~~~~~~~~~~~~v~~ 502 (915)
.++..||..+++-. ....+............ +|. +.+.||.||. +-.||..+.+....- ........
T Consensus 347 ~l~~ve~YD~~~~~W~-~~a~M~~~R~~~~v~~l--~g~--iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~ 420 (571)
T KOG4441|consen 347 RLSSVERYDPRTNQWT-PVAPMNTKRSDFGVAVL--DGK--LYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSG 420 (571)
T ss_pred ccceEEEecCCCCcee-ccCCccCccccceeEEE--CCE--EEEEeccccccccccEEEecCCCCcccccC-CCCcceee
Confidence 35778887775421 11112111111222222 455 7888888864 677887665432111 11112222
Q ss_pred EEeecCCCccEEEEEeCCC------eEEEEecCCCCceeEecCCCCc-EEEEEECCCCCEEEEEeecC-CCCceEEEEEC
Q 002494 503 VCPHHKESIQFIFSTAIDG------KIKAWLYDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGTSK-EGESHLVEWNE 574 (915)
Q Consensus 503 i~~~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~-i~~~~~sp~g~~l~~~~~~~-~~~~~i~~wd~ 574 (915)
.....- +|.+.++|+.++ ++..||..+..-...-...... -..++ .-++...+.||.++ ....++..||.
T Consensus 421 ~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 421 HGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred eEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcC
Confidence 211111 457788888654 4667777665433221111111 11122 23555666666543 12334778888
Q ss_pred CCCeeEEE--ecCCCCCceEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCc
Q 002494 575 SEGAIKRT--YSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMN 621 (915)
Q Consensus 575 ~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~s~~~dg-----~i~iwd~~~~~ 621 (915)
.+.+.... +..... .+..+.+ ++...++|+.|| +|..||..+.+
T Consensus 499 ~~~~W~~v~~m~~~rs-~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 499 ETNQWTMVAPMTSPRS-AVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CCCceeEcccCccccc-cccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 87665443 222221 2222222 566677787665 46666665543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.028 Score=53.75 Aligned_cols=142 Identities=11% Similarity=0.064 Sum_probs=77.2
Q ss_pred EEEEEeCCCeEEEEecCCCCceeEec-CCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCC-CeeEEEecCCCCCc
Q 002494 513 FIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRS 590 (915)
Q Consensus 513 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~ 590 (915)
.+...+.||.++-++++..+...... .+... ...-.-+..+++++. ++.|++|+... |.....+..... .
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~----dg~v~~~n~n~~g~~~d~~~s~~e-~ 103 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTS----DGAVYVFNWNLEGAHSDRVCSGEE-S 103 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecc----cceEEEecCCccchHHHhhhcccc-c
Confidence 35556677888777765433221111 01111 111123345666653 77788887652 221111222122 2
Q ss_pred eE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEE--eCCCcEEEEEcCC
Q 002494 591 LG-VVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT--TSDNGIKILANSD 663 (915)
Q Consensus 591 v~-~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~--~~dg~i~iwd~~~ 663 (915)
+. .+.-..++.+.++++.||.|+.|++.-.+.+.....|.. .++.....+..+.+++.+ |.|..++.|++..
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeccccccccceeEEeccCCceeeeccccCceeeeeccccC-CCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 22 222333455788899999999999998888777665542 244444555555566666 6666666666653
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.068 Score=37.73 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=29.0
Q ss_pred CccCeEEEEEcCCCCEEEEEECCCeEEEEEec
Q 002494 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN 438 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~ 438 (915)
....|.+++|+|...+||.++.+|.|.+|.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34569999999999999999999999999983
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.2 Score=51.77 Aligned_cols=150 Identities=8% Similarity=-0.007 Sum_probs=71.9
Q ss_pred ccEEEEEeCC-----CeEEEEecCCCCceeEecCCCCc-EEEEEECCCCCEEEEEeecCCC--CceEEEEECCCCeeEEE
Q 002494 511 IQFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGTSKEG--ESHLVEWNESEGAIKRT 582 (915)
Q Consensus 511 ~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~-i~~~~~sp~g~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~ 582 (915)
+..++.||.+ ..+..||..+..-...-..+... -.+++ .-+++..+.||.+..+ -..+..||..+.+....
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 3677777765 24667777654322211111111 11122 2356666666632221 24688999887655432
Q ss_pred ecCCCCCceEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCC-
Q 002494 583 YSGFRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD- 653 (915)
Q Consensus 583 ~~~~~~~~v~~~~~sp~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d- 653 (915)
-.......-.++ ...++..++.||.+ ..+.+||..+++-...-...........+.+ ++++++.||.+
T Consensus 422 ~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~ 498 (534)
T PHA03098 422 SPLPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKY 498 (534)
T ss_pred CCCCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcC
Confidence 211111011122 22355666666642 2388899887654322111111101112222 57777777654
Q ss_pred ----CcEEEEEcCCC
Q 002494 654 ----NGIKILANSDG 664 (915)
Q Consensus 654 ----g~i~iwd~~~~ 664 (915)
+.+.+||..++
T Consensus 499 ~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 499 EYYINEIEVYDDKTN 513 (534)
T ss_pred CcccceeEEEeCCCC
Confidence 46788887765
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.59 Score=51.32 Aligned_cols=154 Identities=15% Similarity=0.300 Sum_probs=88.0
Q ss_pred CCCcceeecCCCCCceeeecCCCccc----EEEEecCCCCEEEEEEcCC----CCeEEEEEeCCCcEEEEEcCCC-----
Q 002494 313 GQSDEVSFAGVAHTPNVYSQDDLTKT----VVRTLNQGSNVMSMDFHPQ----QQTILLVGTNVGDISLWEVGSR----- 379 (915)
Q Consensus 313 ~~~~~~~~s~~g~~~~~~~~d~~~~~----~~~~l~h~~~V~~v~fspd----~~~ll~~gs~dg~v~iwd~~~~----- 379 (915)
+++..++|. ||+.++....-...++ --..++.-+.|..+.|.|- ...+||+ .....|.||.+...
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~viGqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~ 97 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSKVIGQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERN 97 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCccEeeccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccc
Confidence 466667764 5777666544322221 1223344456999999985 3346665 45789999998632
Q ss_pred ceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEE
Q 002494 380 ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDI 459 (915)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~ 459 (915)
+.+.+.+.. +.. + ..---..+.|+|....|++-.....-.++++...... ....+ ...+-|.|.
T Consensus 98 K~l~sQtcE---i~e---~--------~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~sr-VkaDi-~~~G~IhCA 161 (671)
T PF15390_consen 98 KLLMSQTCE---IRE---P--------FPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSR-VKADI-KTSGLIHCA 161 (671)
T ss_pred cceeeeeee---ccC---C--------cccCCCcccccCCCceEEEEecCceeEeeeeeeCCce-EEEec-cCCceEEEE
Confidence 222111110 000 0 0011234679999988887666555456666543321 11133 345679999
Q ss_pred EEecCCCeEEEEEEeCCCcEEEEEcC
Q 002494 460 AFAHPNKQLCIVTCGDDKMIKVWDVV 485 (915)
Q Consensus 460 ~~s~~~~~~~l~s~~~d~~i~vwd~~ 485 (915)
+|.+||+++ +++.+..=.-++||-.
T Consensus 162 CWT~DG~RL-VVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 162 CWTKDGQRL-VVAVGSSLHSYIWDSA 186 (671)
T ss_pred EecCcCCEE-EEEeCCeEEEEEecCc
Confidence 999999984 4444445567899843
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.80 E-value=1.1 Score=51.29 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=76.2
Q ss_pred CeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEec-CCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecC----
Q 002494 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD---- 529 (915)
Q Consensus 455 ~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~---- 529 (915)
.+.-+.-|.-++ ..+..+....+.|||.+.+.....-. ...+.|.++.|...++|+.+++.+..+.|.+|--.
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 444455555555 33334445679999998886543322 35788999999999999999999999999998431
Q ss_pred -CCC----cee--EecC-CCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECC
Q 002494 530 -YLG----SRV--DYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (915)
Q Consensus 530 -~~~----~~~--~~~~-~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~ 575 (915)
... .+. .+.. ..++|.+..|.++|..++.++ +.+.++|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECCC
Confidence 111 111 1222 336889999999998776553 458888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.48 E-value=5 Score=38.90 Aligned_cols=208 Identities=12% Similarity=0.140 Sum_probs=108.7
Q ss_pred EEEEEeCCCcEEEEEcCCCeeEE-EecCCCCCEEEEEeecCC-CccEEEEEeCCCeEEEEecCCCCcee--E---e--cC
Q 002494 469 CIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDYLGSRV--D---Y--DA 539 (915)
Q Consensus 469 ~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~i~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~--~---~--~~ 539 (915)
++..--..+.|.-||..+.+... ++++. ++.++.+--.+ ...+.+.++..-.|.-||........ . . ..
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 44555555677778887755432 33322 12222221111 11234444444445557643222111 1 0 11
Q ss_pred CCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCC-------ceEEEEEcCCCCEEEE-EeCCCc
Q 002494 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR-------SLGVVQFDTTRNRFLA-AGDEFQ 611 (915)
Q Consensus 540 ~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-------~v~~~~~sp~~~~l~s-~~~dg~ 611 (915)
...+.+.-..+|+|++.+ +.....++ .+....+....-+.+|.-. .-+.++|+.+.+.++. -+.+-.
T Consensus 107 kknR~NDgkvdP~Gryy~-GtMad~~~----~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYYG-GTMADFGD----DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYE 181 (310)
T ss_pred HhcccccCccCCCCceee-eeeccccc----cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceE
Confidence 233556667889999943 43322111 1222223332223333221 3346788877776655 455667
Q ss_pred EEEEe--CCCCc-----eEEEEcCC--CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeccCCCCcccccC
Q 002494 612 IKFWD--MDNMN-----MLTTVDAD--GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (915)
Q Consensus 612 i~iwd--~~~~~-----~~~~~~~~--~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 682 (915)
|.-|| ..+|. .+..+... .....--.++...+|++.+++-..|+|...|..+| +++..+.-....+++|.
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG-K~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG-KILLEIKLPTPQITSCC 260 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC-cEEEEEEcCCCceEEEE
Confidence 76677 44443 22223221 01112235667778999888888999999999999 66666666677777776
Q ss_pred CC
Q 002494 683 SE 684 (915)
Q Consensus 683 ~~ 684 (915)
+.
T Consensus 261 Fg 262 (310)
T KOG4499|consen 261 FG 262 (310)
T ss_pred ec
Confidence 65
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.41 E-value=2 Score=43.99 Aligned_cols=150 Identities=17% Similarity=0.165 Sum_probs=83.7
Q ss_pred CEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEEEE
Q 002494 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (915)
Q Consensus 348 ~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~ 427 (915)
.+.+.++|+||+.++++...++.-.+|-...+..... .+ ....+....|++++...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~------------------~~--~g~~l~~PS~d~~g~~W~v~~ 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP------------------VL--TGGSLTRPSWDPDGWVWTVDD 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee------------------ec--cCCccccccccCCCCEEEEEc
Confidence 6889999999986666553344444444333332211 01 223677789999988777776
Q ss_pred CCCeEEEEE-ecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEE-EeCCCcEEEEEcC---CC------eeEEEecCC
Q 002494 428 SKHIVHLYT-YNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT-CGDDKMIKVWDVV---AG------RKQYTFEGH 496 (915)
Q Consensus 428 ~dg~i~vwd-~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s-~~~d~~i~vwd~~---~~------~~~~~~~~~ 496 (915)
.+...+++. ..++...........-...|..+.+||||.++.++. ...++.|.+--+. .+ .........
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 85 GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL 164 (253)
T ss_pred CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence 666666664 233332221111111122899999999999743333 2234666665443 23 111122233
Q ss_pred CCCEEEEEeecCCCccEEEEEeC
Q 002494 497 EAPVYSVCPHHKESIQFIFSTAI 519 (915)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~ 519 (915)
...+.++.|..+. .+++.+..
T Consensus 165 ~~~v~~v~W~~~~--~L~V~~~~ 185 (253)
T PF10647_consen 165 LSDVTDVAWSDDS--TLVVLGRS 185 (253)
T ss_pred cCcceeeeecCCC--EEEEEeCC
Confidence 4678889998754 45554444
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.19 Score=48.25 Aligned_cols=101 Identities=16% Similarity=0.267 Sum_probs=58.8
Q ss_pred EEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEE-EEEcCCCCEEEEEECCCeEEEEEecCC
Q 002494 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR-CVWGPDGLMLGVAFSKHIVHLYTYNPT 440 (915)
Q Consensus 362 l~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~spd~~~l~s~~~dg~i~vwd~~~~ 440 (915)
+++|+.+|.|.+|+..-....... ...-...|.+ +.--.++.+..+++.+|.|+.|++.-+
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d~------------------~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSDR------------------VCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred EEeecccceEEEecCCccchHHHh------------------hhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence 678999999999998732211110 0111222322 333345668888999999999999876
Q ss_pred CceeeeEEeeccc-CCeeEEEEecCCCeEEEEEE--eCCCcEEEEEcC
Q 002494 441 GELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTC--GDDKMIKVWDVV 485 (915)
Q Consensus 441 ~~~~~~~~~~~h~-~~v~~~~~s~~~~~~~l~s~--~~d~~i~vwd~~ 485 (915)
+.+. ....|. .++.....+..+. +++.+ |.|..++.|++.
T Consensus 135 k~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 135 KVLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcchh
Confidence 5543 233455 3444444444444 34444 556666666654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.98 E-value=7.9 Score=39.21 Aligned_cols=171 Identities=11% Similarity=0.084 Sum_probs=101.2
Q ss_pred ecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCC-CCCEEEEEeecCCCccEEEEEeCCCeEEEEec
Q 002494 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528 (915)
Q Consensus 450 ~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~ 528 (915)
.+-...+.++.|+|+.+ .|++......-.|+=..+|..+.++.-. -...-.+.+.. +++++++--.++.+.++.+
T Consensus 82 ~g~~~nvS~LTynp~~r--tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig--~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTR--TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG--GNQFVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcc--eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec--CCEEEEEehhcceEEEEEE
Confidence 34555699999999999 5666666666667766788888876421 12223344433 4577777778888888877
Q ss_pred CCCCceeE-------ec--CC-CCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCe-eEEEecCCCC------Cce
Q 002494 529 DYLGSRVD-------YD--AP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRK------RSL 591 (915)
Q Consensus 529 ~~~~~~~~-------~~--~~-~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~------~~v 591 (915)
+....... +. .+ +.....++|+|....++.+-. + ..-.|+.|+..... .+.....+.. ..+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE-r-~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE-R-NPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc-c-CCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 65533221 11 12 446789999999988887764 1 13335555522111 1111111111 146
Q ss_pred EEEEEcCCCCEEEE-EeCCCcEEEEeCCCCceEEEEc
Q 002494 592 GVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLTTVD 627 (915)
Q Consensus 592 ~~~~~sp~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~ 627 (915)
.++.|++..+.+++ +.+++.+.-.|.. |..+..+.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 67788875555544 5567777777765 44455444
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=2.7 Score=48.72 Aligned_cols=194 Identities=12% Similarity=0.018 Sum_probs=88.3
Q ss_pred CCCCEEEEEECCC------eEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCC-----CcEEEEEcCC
Q 002494 418 PDGLMLGVAFSKH------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVA 486 (915)
Q Consensus 418 pd~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d-----~~i~vwd~~~ 486 (915)
.++..++.|+.++ .+..||..++.-.. ...+.........+.+ ++. +++.||.+ ..+..||..+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~~--~~~--lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTVF--NNR--IYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEEE--CCE--EEEEeCCCCCEecceEEEEcCCC
Confidence 3555666666432 56778877643211 1111111111222222 444 56667655 3577788776
Q ss_pred CeeEEEec-CCCCCEEEEEeecCCCccEEEEEeCC------CeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEE
Q 002494 487 GRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (915)
Q Consensus 487 ~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~ 559 (915)
++....-. .+...-.+++.. ++.+.+.|+.+ +.+..||..+.+-...-..+.......+...+++..+.|
T Consensus 368 ~~W~~~~~lp~~r~~~~~~~~---~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 444 (534)
T PHA03098 368 SKWREEPPLIFPRYNPCVVNV---NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIG 444 (534)
T ss_pred CceeeCCCcCcCCccceEEEE---CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEEC
Confidence 64322110 011111112211 33667777632 357788876543222111111111111222355555666
Q ss_pred eecCCC----CceEEEEECCCCeeEEEecCCCC-CceEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCc
Q 002494 560 GTSKEG----ESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMN 621 (915)
Q Consensus 560 ~~~~~~----~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~s~~~d-----g~i~iwd~~~~~ 621 (915)
+.+... -..+.+||..+++....-..... .....+.+ +++.++.||.+ +.+.+||..+.+
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 543211 13488899887765432111111 01122222 56666677643 467888877654
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.34 E-value=2.8 Score=47.98 Aligned_cols=112 Identities=13% Similarity=0.170 Sum_probs=71.5
Q ss_pred EEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEc--CCCCEEEEEeCCCcEEEEeCC---
Q 002494 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD--TTRNRFLAAGDEFQIKFWDMD--- 618 (915)
Q Consensus 544 i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~s~~~dg~i~iwd~~--- 618 (915)
..-+.-|.-++..++ .. ....+.+||.+.+.....-.-.....|..+.|. |+|+.+++.|..+.|.+|.-.
T Consensus 32 ~~li~gss~~k~a~V-~~---~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 32 PSLISGSSIKKIAVV-DS---SRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred cceEeecccCcEEEE-EC---CCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 344444454444333 22 255799999998875544332223378988885 789999999999999998542
Q ss_pred ------CCceEEEEcCCCC-CCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 002494 619 ------NMNMLTTVDADGG-LPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (915)
Q Consensus 619 ------~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 661 (915)
+...+..+..... ..+|.+..|-++|.+++.+| +.+.|++-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1234444432211 13789999999998776554 55777764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.14 E-value=11 Score=38.42 Aligned_cols=146 Identities=14% Similarity=0.073 Sum_probs=82.7
Q ss_pred CeeEEEEecCCCeEEEEEEe--CCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEe-cCCC
Q 002494 455 GVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL-YDYL 531 (915)
Q Consensus 455 ~v~~~~~s~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd-~~~~ 531 (915)
.+.+.++++++.. +.+... ....++++. .+....... ....+..-.|.++ +...+....+...+++. ....
T Consensus 25 ~~~s~AvS~dg~~-~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~--g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSR-VAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPD--GWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCe-EEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCC--CCEEEEEcCCCceEEEEecCCC
Confidence 6889999999995 223332 333455554 333333321 2235666677665 45555555566666663 2222
Q ss_pred -CceeEecCCC--CcEEEEEECCCCCEEEEEeecCCCCceEEEEECC---CC------eeEEEecCCCCCceEEEEEcCC
Q 002494 532 -GSRVDYDAPG--NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES---EG------AIKRTYSGFRKRSLGVVQFDTT 599 (915)
Q Consensus 532 -~~~~~~~~~~--~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~---~~------~~~~~~~~~~~~~v~~~~~sp~ 599 (915)
.......... ..|..+.+||||..++....+.+ .+.+++--+. .+ ........... .+..+.|.++
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~-~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~-~v~~v~W~~~ 176 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGG-GGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS-DVTDVAWSDD 176 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCC-CCeEEEEEEEeCCCCCcceeccceEecccccC-cceeeeecCC
Confidence 2222333222 27999999999999987775433 4667665432 23 11112222222 7889999999
Q ss_pred CCEEEEEeC
Q 002494 600 RNRFLAAGD 608 (915)
Q Consensus 600 ~~~l~s~~~ 608 (915)
+.+++.+..
T Consensus 177 ~~L~V~~~~ 185 (253)
T PF10647_consen 177 STLVVLGRS 185 (253)
T ss_pred CEEEEEeCC
Confidence 887776554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.12 E-value=12 Score=40.07 Aligned_cols=123 Identities=12% Similarity=0.173 Sum_probs=79.0
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 424 (915)
..++|.++.||+|.+ ++|+--.+.+|.+++....+...... ...+.....|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~---------------~~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYT---------------QECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHH---------------HHhccCcceeEEEEEecC-eeEE
Confidence 467999999999998 78998899999999986554332111 012234456889999876 5666
Q ss_pred EEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCC
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (915)
Q Consensus 425 s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~ 487 (915)
..+..| +-+|.....+ +.....+.|+..|.--.|.++..-.+++++-..+++.=+-++++
T Consensus 128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 665554 5566554432 11114456788899999999987433333324445544544444
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.05 E-value=11 Score=37.80 Aligned_cols=198 Identities=11% Similarity=-0.029 Sum_probs=117.2
Q ss_pred CeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCce
Q 002494 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534 (915)
Q Consensus 455 ~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 534 (915)
.-..++-.|||. +.+++...+.|--.|..+|+....--+....-..|..-|++ ..-++-+.. .|.-.|-++.+..
T Consensus 63 ap~dvapapdG~--VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg--~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 63 APFDVAPAPDGA--VWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDG--SAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CccccccCCCCc--eEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCC--CeeEecCcc-eeEEecCcccceE
Confidence 345667778887 67788777788778888887655444444444555565543 233332222 3333444332221
Q ss_pred e---EecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCc
Q 002494 535 V---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ 611 (915)
Q Consensus 535 ~---~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~ 611 (915)
. .............|.+.|+.-+++.... .+ -.|.. ...+..|....+..-+.++..|+|...++.-.++.
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~--yG---rLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagna 211 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGA--YG---RLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNA 211 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeecccc--ce---ecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccc
Confidence 1 1122334677889999999888765211 11 11222 22345555555546677889999998888777778
Q ss_pred EEEEeCCCCceEEEEcCCCC-CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 612 IKFWDMDNMNMLTTVDADGG-LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
|-..|..++.. ..+..... ......+.-+|.|..-++-...+.++-+|..+.
T Consensus 212 iaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 212 IARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred eEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence 88888877632 22222211 123455666778888888777788887776654
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.00 E-value=25 Score=42.01 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=62.9
Q ss_pred CCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCC-----CeEEEEEEeCCCcEEEEEcCCCeeEEEec
Q 002494 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN-----KQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (915)
Q Consensus 420 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-----~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 494 (915)
...++.+-.+|.+..+....+..+.....-..-...|.|+++.++. .+ +++.++.|+.+++..+.-..++..+.
T Consensus 549 r~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsr-fla~a~~d~~vriisL~p~d~l~~ls 627 (1205)
T KOG1898|consen 549 RRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSR-FLALASVDNMVRIISLDPSDCLQPLS 627 (1205)
T ss_pred ceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcc-eeeeeccccceeEEEecCcceEEEcc
Confidence 3455666666666666554333333222212335578899998876 22 68999999999999988666665553
Q ss_pred --CCCCCEEEEEeecCC--C-----ccEEEEEeCCCeEEEE
Q 002494 495 --GHEAPVYSVCPHHKE--S-----IQFIFSTAIDGKIKAW 526 (915)
Q Consensus 495 --~~~~~v~~i~~~~~~--~-----~~~l~s~~~dg~i~iw 526 (915)
+-..++.++++-... . .-++.+|-.+|.+.-+
T Consensus 628 ~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 628 VQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred ccccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 344455555443221 1 1356677777776544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.66 E-value=13 Score=42.55 Aligned_cols=166 Identities=9% Similarity=0.048 Sum_probs=80.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeee-EEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCe
Q 002494 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (915)
Q Consensus 410 ~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~ 488 (915)
.+..+.|+.+. .|++...+|++++|++-... +... .........|..+.|..+|- +.-..+|.+.+-.-....
T Consensus 85 ~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV----avlt~~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDDE-ELICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV----AVLTVSGQVILINGVEEP 158 (829)
T ss_pred CeeeecccCCc-eEEEEeccceEEEeecchhh-hcccccccccccCceeEEEEecCce----EEEecCCcEEEEcCCCcc
Confidence 78899999765 55667789999999987532 2210 01122334566666666553 333344555444312111
Q ss_pred eEEEecC-CCCCEEEEEee---cCCCccEEEEEeCCCeEEEEecCCC-CceeEecCCCCcEEEEEECCCCCEEEEEeecC
Q 002494 489 KQYTFEG-HEAPVYSVCPH---HKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (915)
Q Consensus 489 ~~~~~~~-~~~~v~~i~~~---~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~ 563 (915)
...++.. ........+|. +......++-....-...++..... .....+......+..++.||+.++|+.-..
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~-- 236 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE-- 236 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEec--
Confidence 2222221 01111112222 1111111111110000011111111 112223333457888999999999987764
Q ss_pred CCCceEEEEECCCCeeEEEecC
Q 002494 564 EGESHLVEWNESEGAIKRTYSG 585 (915)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~ 585 (915)
.|.|.+-+....++...+..
T Consensus 237 --~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 237 --TGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred --CCcEEEEecchhhhhhccCC
Confidence 66688888776666666553
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.63 E-value=5 Score=43.43 Aligned_cols=150 Identities=9% Similarity=0.080 Sum_probs=91.7
Q ss_pred EEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCC------ccEEEEEeCCCeEEEEecCCCC
Q 002494 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES------IQFIFSTAIDGKIKAWLYDYLG 532 (915)
Q Consensus 459 ~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~ 532 (915)
+-.+.+...+++..|+....++-.|+..|+.+..+..|..- -+.+.|... .+.| .|-.+..|.-.|.+..+
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccC
Confidence 33333444445666777788899999999999999877765 356665432 1233 44455555556766554
Q ss_pred ceeEecCCCC-----cEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe
Q 002494 533 SRVDYDAPGN-----WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (915)
Q Consensus 533 ~~~~~~~~~~-----~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 607 (915)
.......... ...+..-. ..-++++++. .|-|++||.-.-+....+++... .|-.+..+.+|+++++.+
T Consensus 549 NKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATC 622 (776)
T ss_pred Cceeeeeehhccccccccccccc-cCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEee
Confidence 3222221122 22233222 3347888775 44499999654444444555544 788899999999998887
Q ss_pred CCCcEEEEeCC
Q 002494 608 DEFQIKFWDMD 618 (915)
Q Consensus 608 ~dg~i~iwd~~ 618 (915)
.. .+.+-|++
T Consensus 623 k~-yllL~d~~ 632 (776)
T COG5167 623 KN-YLLLTDVP 632 (776)
T ss_pred cc-eEEEEecc
Confidence 64 56676664
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=92.40 E-value=16 Score=38.20 Aligned_cols=237 Identities=12% Similarity=0.106 Sum_probs=102.9
Q ss_pred CccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecc---cCCeeEEEEecCCCeEEEEEEeCCCcEEEEE
Q 002494 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH---VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 407 ~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h---~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd 483 (915)
-...+..+.|..+..-+++|. .+.| +....+...-........ .....++.|..+ . .+++| ..+. .+.-
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~--~-g~ivG-~~g~-ll~T 86 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN--E-GWIVG-EPGL-LLHT 86 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT--E-EEEEE-ETTE-EEEE
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC--c-eEEEc-CCce-EEEe
Confidence 345789999996566666654 4543 444333321111111111 123667777543 2 34544 3443 3333
Q ss_pred cCCCeeEEEec---CCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCce--eEecCCCCcEEEEEECCCCCEEEE
Q 002494 484 VVAGRKQYTFE---GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNWCTMMAYSADGTRLFS 558 (915)
Q Consensus 484 ~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~sp~g~~l~~ 558 (915)
...|+.-..+. .-......+..... + .....+..|.| |-....... .........+..+.-++||+++++
T Consensus 87 ~DgG~tW~~v~l~~~lpgs~~~i~~l~~--~-~~~l~~~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vav 161 (302)
T PF14870_consen 87 TDGGKTWERVPLSSKLPGSPFGITALGD--G-SAELAGDRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAV 161 (302)
T ss_dssp SSTTSS-EE----TT-SS-EEEEEEEET--T-EEEEEETT--E--EEESSTTSSEEEEE-S----EEEEEE-TTS-EEEE
T ss_pred cCCCCCcEEeecCCCCCCCeeEEEEcCC--C-cEEEEcCCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEE
Confidence 34444333221 11223333333222 1 33333444544 333333322 223334567888889999999988
Q ss_pred EeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCceEEE--EcCCCCCCCc
Q 002494 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD-NMNMLTT--VDADGGLPAS 635 (915)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~-~~~~~~~--~~~~~~~~~v 635 (915)
+.. -....-||.-...-...-.. ....|..+.|+|++...+++ ..|.|++=+.. ..+.... .......-.+
T Consensus 162 s~~----G~~~~s~~~G~~~w~~~~r~-~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ 235 (302)
T PF14870_consen 162 SSR----GNFYSSWDPGQTTWQPHNRN-SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGI 235 (302)
T ss_dssp ETT----SSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-E
T ss_pred ECc----ccEEEEecCCCccceEEccC-ccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceee
Confidence 752 23345676543222222222 22389999999998765544 88888887722 2222111 1111111246
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 636 ~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
..++|.+++...++|+. |.+ +.....|
T Consensus 236 ld~a~~~~~~~wa~gg~-G~l-~~S~DgG 262 (302)
T PF14870_consen 236 LDLAYRPPNEIWAVGGS-GTL-LVSTDGG 262 (302)
T ss_dssp EEEEESSSS-EEEEEST-T-E-EEESSTT
T ss_pred EEEEecCCCCEEEEeCC-ccE-EEeCCCC
Confidence 78999998887776654 533 2344444
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.23 E-value=12 Score=36.36 Aligned_cols=50 Identities=16% Similarity=0.387 Sum_probs=37.3
Q ss_pred CEEEEEeCCCcEEEEeCC--CCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCC
Q 002494 601 NRFLAAGDEFQIKFWDMD--NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (915)
Q Consensus 601 ~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 653 (915)
..|+.+...+.|.+|++. ..+.+.++..-+ .|..+.++..|++|++--.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~---~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVG---RVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchh---heeEEEeccccceEEEEEee
Confidence 445444666789999988 345666676543 78899999999999997543
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.92 E-value=7 Score=44.41 Aligned_cols=148 Identities=11% Similarity=0.026 Sum_probs=69.4
Q ss_pred CccEEEEEeCC--CeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCC
Q 002494 510 SIQFIFSTAID--GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (915)
Q Consensus 510 ~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (915)
++...+.|+.+ ..+..||..+..-...-.............-+|+..+.||.+.. ...+..||.++.+....-....
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCC
Confidence 34667777754 34777876543322111111111111112235666666665322 3557789988766543211111
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCC-----CcEEEEEcC
Q 002494 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD-----NGIKILANS 662 (915)
Q Consensus 588 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d-----g~i~iwd~~ 662 (915)
. .....+..-+|...+.|+ .+.+||..+.+-...-......... +++ --+|++.+.||.+ ..+..||..
T Consensus 397 ~-r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 397 P-HYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred c-cccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECC
Confidence 1 111111223555555553 5778998766443222211111111 122 2256777777754 346667766
Q ss_pred CC
Q 002494 663 DG 664 (915)
Q Consensus 663 ~~ 664 (915)
++
T Consensus 471 ~~ 472 (480)
T PHA02790 471 TY 472 (480)
T ss_pred CC
Confidence 54
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.3 Score=52.30 Aligned_cols=145 Identities=12% Similarity=0.043 Sum_probs=89.6
Q ss_pred CeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCee-----EEEecC------CCCCEEEEEeecCCCccEEEEEeCCCeE
Q 002494 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-----QYTFEG------HEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (915)
Q Consensus 455 ~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~-----~~~~~~------~~~~v~~i~~~~~~~~~~l~s~~~dg~i 523 (915)
++..+...+|+....++..+.+-.|..||+++-.. ..-+.. ......++.|+|... ...+.+..|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 55666666777643444455555789999875321 111111 223345667777643 346677788998
Q ss_pred EEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCC---CCCceEEEEEcCCC
Q 002494 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF---RKRSLGVVQFDTTR 600 (915)
Q Consensus 524 ~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~---~~~~v~~~~~sp~~ 600 (915)
++..+........-.......++++|+|.|+.++.+-. .|++.-|... ++....+.+. ....|.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 88866543333322223457899999999999998863 6778777654 4444444332 22378899998777
Q ss_pred CEEEE
Q 002494 601 NRFLA 605 (915)
Q Consensus 601 ~~l~s 605 (915)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 76665
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=91.88 E-value=20 Score=39.18 Aligned_cols=21 Identities=10% Similarity=-0.217 Sum_probs=11.9
Q ss_pred CCCEEEEEEC-CCeEEEEEecC
Q 002494 419 DGLMLGVAFS-KHIVHLYTYNP 439 (915)
Q Consensus 419 d~~~l~s~~~-dg~i~vwd~~~ 439 (915)
+++..+.++. +..+.++|+..
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~ 59 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNA 59 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCC
Confidence 4555554443 45567777754
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=91.32 E-value=20 Score=37.42 Aligned_cols=167 Identities=11% Similarity=0.087 Sum_probs=87.7
Q ss_pred cEEEEEcCCCeeEEEecC------CCCCEEEEEeecCCC----ccEEEEEeCCCeEEEEecCCCCceeEecCC-------
Q 002494 478 MIKVWDVVAGRKQYTFEG------HEAPVYSVCPHHKES----IQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------- 540 (915)
Q Consensus 478 ~i~vwd~~~~~~~~~~~~------~~~~v~~i~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------- 540 (915)
.|.+||+.+++.++++.- ..+.+..+.+..... +...++-+..+.|.++|+.+++.......+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 466788888877766542 245677777765322 223344444568999999876544332211
Q ss_pred ------------CCcEEEEEECC---CCCEEEEEeecCCCCceEEEEECCC-----C---------eeEEEecCCCCCce
Q 002494 541 ------------GNWCTMMAYSA---DGTRLFSCGTSKEGESHLVEWNESE-----G---------AIKRTYSGFRKRSL 591 (915)
Q Consensus 541 ------------~~~i~~~~~sp---~g~~l~~~~~~~~~~~~i~~wd~~~-----~---------~~~~~~~~~~~~~v 591 (915)
...+..++.+| +|+.|......+ -++|.+.+ . ..+..+ +......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s 188 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQS 188 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-cccCCCC
Confidence 11255666655 666666554211 12333221 1 011221 2211245
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCC---ceEEEEc-CCCCCCCcceEEEcC--CCCEEEEE
Q 002494 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNM---NMLTTVD-ADGGLPASPRLRFNK--EGSLLAVT 650 (915)
Q Consensus 592 ~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~-~~~~~~~v~~v~~s~--~~~~l~s~ 650 (915)
..++++++|..+++--..+.|..|+..+. +....+. .......+.++.+.+ +|.+.+.+
T Consensus 189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 66888999988888888999999998861 1222222 222133566777777 55544443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=91.28 E-value=26 Score=38.32 Aligned_cols=200 Identities=14% Similarity=0.049 Sum_probs=106.2
Q ss_pred CCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCC
Q 002494 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (915)
Q Consensus 419 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 498 (915)
+|+ +..+..+|.|.-.|.+++..+...... .....+..-.+..+|+ ++.++.++.++.+|..+|+.+........
T Consensus 68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred CCe-EEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 444 334467787888888777643211111 0112233333334676 77788889999999889988887765541
Q ss_pred -CEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCC---CcEEEEEECCCCCEEEEEeecCCCCceEEEEEC
Q 002494 499 -PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (915)
Q Consensus 499 -~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~ 574 (915)
.+..-.+.. + ..+..++.++.+...|..++.......... ..+..-....++. +..+..+ . ++.+.-.|.
T Consensus 143 ~~~~~~~v~~--~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~-~-~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPVVG--D-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDG-Y-DGILYALNA 216 (370)
T ss_pred eEEecCcEEc--C-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCC-C-cceEEEEEc
Confidence 111111111 2 234444467888888877776655543322 1111111122333 3333211 1 335777788
Q ss_pred CCCeeEEEecCCCCC---ceEEEEEcCC-----CCEEEEEeCCCcEEEEeCCCCceEEEEcCC
Q 002494 575 SEGAIKRTYSGFRKR---SLGVVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (915)
Q Consensus 575 ~~~~~~~~~~~~~~~---~v~~~~~sp~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 629 (915)
.+|......+..... .+........ +.-++.++.++.+...|..+++.+..+...
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 788776664322110 0100001111 122456677888999999999999888764
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.06 E-value=7.4 Score=44.21 Aligned_cols=183 Identities=9% Similarity=-0.071 Sum_probs=80.5
Q ss_pred CCCEEEEEECC-----CeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCC--CcEEEEEcCCCeeEE
Q 002494 419 DGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQY 491 (915)
Q Consensus 419 d~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d--~~i~vwd~~~~~~~~ 491 (915)
++..+++|+.+ ..+..||..++.-.. ...+.........+. -++. +.+.||.+ ..+..||..+++...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~~~v~--~~~~--iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYASGVP--ANNK--LYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcceEEE--ECCE--EEEECCcCCCCceEEEECCCCeEEE
Confidence 34555666643 256678877643211 111111111122222 3454 56666653 457888876654322
Q ss_pred EecCCCCCE--EEEEeecCCCccEEEEEeCCC---eEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCC
Q 002494 492 TFEGHEAPV--YSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (915)
Q Consensus 492 ~~~~~~~~v--~~i~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~ 566 (915)
+..-..+. .+++.. +|.+.+.|+.++ .+..||.++..-...-..........+..-+|+..+.|+
T Consensus 346 -~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG------ 415 (480)
T PHA02790 346 -MPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR------ 415 (480)
T ss_pred -CCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC------
Confidence 11111111 111211 446777777653 366787765432221111111111111123454444443
Q ss_pred ceEEEEECCCCeeEEEe--cCCCCCceEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCC
Q 002494 567 SHLVEWNESEGAIKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNM 620 (915)
Q Consensus 567 ~~i~~wd~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~s~~~d-----g~i~iwd~~~~ 620 (915)
.+.+||..+.+....- ..... ....+. -+|+..++||.+ ..+..||..++
T Consensus 416 -~~e~ydp~~~~W~~~~~m~~~r~-~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 416 -NAEFYCESSNTWTLIDDPIYPRD-NPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred -ceEEecCCCCcEeEcCCCCCCcc-ccEEEE--ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 2567888776554322 11111 222222 256677777754 24555665543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=91.04 E-value=34 Score=40.61 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=52.6
Q ss_pred CCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCC----------Cee--EE-Ee--------cCCCCCEEEEEeecCC-Cc
Q 002494 454 GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA----------GRK--QY-TF--------EGHEAPVYSVCPHHKE-SI 511 (915)
Q Consensus 454 ~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~----------~~~--~~-~~--------~~~~~~v~~i~~~~~~-~~ 511 (915)
..|..+.++|+|. +++..|..| |.|..+.. |+. .. ++ ..+...|..+.|+|.. ++
T Consensus 85 f~v~~i~~n~~g~--~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 85 FEVHQISLNPTGS--LLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred eeEEEEEECCCCC--EEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 4688999999999 677777655 44444321 111 11 11 1345678899999975 35
Q ss_pred cEEEEEeCCCeEEEEecCCCCc
Q 002494 512 QFIFSTAIDGKIKAWLYDYLGS 533 (915)
Q Consensus 512 ~~l~s~~~dg~i~iwd~~~~~~ 533 (915)
..|+.-..|+++|+||+.....
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCC
Confidence 7888999999999999975443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.90 E-value=15 Score=35.10 Aligned_cols=173 Identities=14% Similarity=0.100 Sum_probs=95.2
Q ss_pred EEEEEeCC--CcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEE
Q 002494 469 CIVTCGDD--KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 546 (915)
Q Consensus 469 ~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 546 (915)
++.+.+.- ..|++||+.+|+.+..-.-....+..=-+...++ .+..-.-.+|.-..+|.++.++.-.+...+. -..
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-GWg 135 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGE-GWG 135 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCc-cee
Confidence 55555443 4699999999987765432211221111111122 2334455688888899888776655543322 223
Q ss_pred EEECCCCCEEEEEeecCCCCceEEEEECCCCeeEE----EecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 002494 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR----TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (915)
Q Consensus 547 ~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 622 (915)
++ .|++.|+.+. |..+++.-|.++-.... ++.+..-..++-+.|- +|...|-.-.+..|...|..+|+.
T Consensus 136 Lt--~d~~~Limsd----GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 136 LT--SDDKNLIMSD----GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred ee--cCCcceEeeC----CceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 33 4566566553 45667777766543332 2333322234445554 555555455556677778888887
Q ss_pred EEEEcCC----------CCCCCcceEEEcCCCC-EEEEE
Q 002494 623 LTTVDAD----------GGLPASPRLRFNKEGS-LLAVT 650 (915)
Q Consensus 623 ~~~~~~~----------~~~~~v~~v~~s~~~~-~l~s~ 650 (915)
+..+... .+....+.+++.|++. ++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 7666421 1123567889999764 44444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.87 E-value=11 Score=43.22 Aligned_cols=197 Identities=10% Similarity=0.091 Sum_probs=99.9
Q ss_pred CCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEE--e--cCCCCCEEEEE
Q 002494 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT--F--EGHEAPVYSVC 504 (915)
Q Consensus 429 dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~--~~~~~~v~~i~ 504 (915)
--.|+|+++.+ ..+... +..| +.+..+.|+.+.. |+....+|+++||++. |..+.. . ......|..+.
T Consensus 63 ~~~I~If~~sG-~lL~~~--~w~~-~~lI~mgWs~~ee---LI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~ 134 (829)
T KOG2280|consen 63 RPYIRIFNISG-QLLGRI--LWKH-GELIGMGWSDDEE---LICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECR 134 (829)
T ss_pred ceeEEEEeccc-cchHHH--HhcC-CCeeeecccCCce---EEEEeccceEEEeecc-hhhhcccccccccccCceeEEE
Confidence 34688888765 433321 1223 3788999998776 7778899999999964 333322 1 22233454444
Q ss_pred eecCCCccEEEEEeCCCeEEEE-ecCCCCceeEecC-CCCcE--EEEEECCCCC---EEEEEeecCCCCceEEEEECCCC
Q 002494 505 PHHKESIQFIFSTAIDGKIKAW-LYDYLGSRVDYDA-PGNWC--TMMAYSADGT---RLFSCGTSKEGESHLVEWNESEG 577 (915)
Q Consensus 505 ~~~~~~~~~l~s~~~dg~i~iw-d~~~~~~~~~~~~-~~~~i--~~~~~sp~g~---~l~~~~~~~~~~~~i~~wd~~~~ 577 (915)
+.. +| ++.-..+|.+.+- +.... ....+.. +.... .|-+..+++. .++-... ..+ ..+.-...+
T Consensus 135 ~f~--~G--Vavlt~~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~---~v~-~~~~q~~~~ 205 (829)
T KOG2280|consen 135 FFH--NG--VAVLTVSGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV---AVG-LHICQVEES 205 (829)
T ss_pred Eec--Cc--eEEEecCCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeech---hhh-hcccceecc
Confidence 433 33 4444445554433 22211 1111111 11111 2222222221 1111100 000 011111111
Q ss_pred e-eEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCC
Q 002494 578 A-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (915)
Q Consensus 578 ~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 644 (915)
. ....+..... .+..+..||++++|+--..+|.|.+-+.+..+....+....+. +--.++|..+.
T Consensus 206 ~~q~~~~~~~~~-~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgnd 271 (829)
T KOG2280|consen 206 RVQLHALSWPNS-SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGND 271 (829)
T ss_pred cccccccCCCCc-eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecCC
Confidence 1 1112222222 6778899999999999999999999999888777777644332 22356776544
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.76 Score=31.43 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=25.3
Q ss_pred CceeEEEEecCC---CeEEEec-CCeeEEeeccC
Q 002494 841 ESAACIALSKND---SYVMSAS-GGKVSLFNMMT 870 (915)
Q Consensus 841 ~~I~~l~~S~dg---~~L~s~s-d~~v~vw~l~t 870 (915)
+.|+++.|||+. .+||.+. -|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999754 4888888 89999999995
|
It contains a characteristic DLL sequence motif. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.00 E-value=1 Score=30.78 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=26.5
Q ss_pred CCEEEEEEcCCCC--eEEEEEeCCCcEEEEEcCCC
Q 002494 347 SNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGSR 379 (915)
Q Consensus 347 ~~V~~v~fspd~~--~ll~~gs~dg~v~iwd~~~~ 379 (915)
+.|.+++|||+.. .+|+..-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998553 47887778899999999853
|
It contains a characteristic DLL sequence motif. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.99 E-value=30 Score=37.04 Aligned_cols=116 Identities=15% Similarity=0.133 Sum_probs=64.5
Q ss_pred CCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 002494 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (915)
Q Consensus 541 ~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 620 (915)
...+.++.+.|++.+++++. .+.+..-....++.-..........++.+.+.++++.+++ +..|.+++=....+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-----~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-----RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-----CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCC
Confidence 44788999999988777664 3434322112223223333333347889999999886665 45676653234444
Q ss_pred ceEEEEcCC--CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 621 NMLTTVDAD--GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 621 ~~~~~~~~~--~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
..-...... .....+.++.+.+++..++++ .+|.+. .....|
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G 289 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGG 289 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCC
Confidence 332222221 111246788999987765544 566554 344434
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.86 E-value=0.15 Score=54.29 Aligned_cols=147 Identities=13% Similarity=0.198 Sum_probs=99.8
Q ss_pred CEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEEEE-E
Q 002494 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV-A 426 (915)
Q Consensus 348 ~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s-~ 426 (915)
......|-|.+.. ++.++.+..|..||-....... ....+....++|..+|..++. +
T Consensus 36 ~pi~~~w~~e~~n-lavaca~tiv~~YD~agq~~le---------------------~n~tg~aldm~wDkegdvlavlA 93 (615)
T KOG2247|consen 36 GPIIHRWRPEGHN-LAVACANTIVIYYDKAGQVILE---------------------LNPTGKALDMAWDKEGDVLAVLA 93 (615)
T ss_pred ccceeeEecCCCc-eehhhhhhHHHhhhhhcceecc---------------------cCCchhHhhhhhccccchhhhhh
Confidence 3445567787776 5556678889999866543321 123445667888888876654 5
Q ss_pred ECCCeEEEEEecCCCceeeeEEeec-ccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEe
Q 002494 427 FSKHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (915)
Q Consensus 427 ~~dg~i~vwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 505 (915)
-..+.+.+||+.+...-. ..+.+ |.... +.|++.+. .++.+...|.+.|++..+.+.+-..-.|..++.++++
T Consensus 94 ek~~piylwd~n~eytqq--LE~gg~~s~sl--l~wsKg~~--el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av 167 (615)
T KOG2247|consen 94 EKTGPIYLWDVNSEYTQQ--LESGGTSSKSL--LAWSKGTP--ELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAV 167 (615)
T ss_pred hcCCCeeechhhhhhHHH--HhccCcchHHH--HhhccCCc--cccccccccceEEEeccchhhhhhhcccccceeEEEe
Confidence 567899999998742211 11211 22222 78998888 6888889999999998887766666559999999999
Q ss_pred ecCCCccEEEEEeCCCeEEE
Q 002494 506 HHKESIQFIFSTAIDGKIKA 525 (915)
Q Consensus 506 ~~~~~~~~l~s~~~dg~i~i 525 (915)
.+.+ +.+.++.|..+.+
T Consensus 168 ~lEd---~vil~dcd~~L~v 184 (615)
T KOG2247|consen 168 TLED---YVILCDCDNTLSV 184 (615)
T ss_pred cccc---eeeecCcHHHHHH
Confidence 8763 6777777665544
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=89.85 E-value=20 Score=41.74 Aligned_cols=116 Identities=11% Similarity=0.104 Sum_probs=74.7
Q ss_pred CeEEEEEcC--CCCEEEEEECCCeEEEEEecC-------C----C------ceeeeEEeecccCCeeEEEEe--cCCCeE
Q 002494 410 SVNRCVWGP--DGLMLGVAFSKHIVHLYTYNP-------T----G------ELRQHLEIDAHVGGVNDIAFA--HPNKQL 468 (915)
Q Consensus 410 ~v~~~~~sp--d~~~l~s~~~dg~i~vwd~~~-------~----~------~~~~~~~~~~h~~~v~~~~~s--~~~~~~ 468 (915)
.|+.+.... +...|+.|.+||.|.+|..++ . . .+.....+. -...+++++++ ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-- 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-- 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence 455555443 556889999999999997632 0 0 011112222 34578999998 5555
Q ss_pred EEEEEeCCCcEEEEEcCCC--eeEE-EecCCCCCEEEEEeecCCC---cc-EEEEEeCCCeEEEEec
Q 002494 469 CIVTCGDDKMIKVWDVVAG--RKQY-TFEGHEAPVYSVCPHHKES---IQ-FIFSTAIDGKIKAWLY 528 (915)
Q Consensus 469 ~l~s~~~d~~i~vwd~~~~--~~~~-~~~~~~~~v~~i~~~~~~~---~~-~l~s~~~dg~i~iwd~ 528 (915)
++|++++...|.||-.... +... .-..+...|.+|+|.++.. |. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7888888888888765432 1111 1112567788999887652 32 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=89.68 E-value=43 Score=39.79 Aligned_cols=39 Identities=28% Similarity=0.327 Sum_probs=28.2
Q ss_pred CcceEEEcCC---CCEEEEEeCCCcEEEEEcCCCceeeeecc
Q 002494 634 ASPRLRFNKE---GSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (915)
Q Consensus 634 ~v~~v~~s~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 672 (915)
.|..+.|+|. +..|++-..|+++++||+.....+.+++.
T Consensus 148 ~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 148 EIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred eEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 5667888874 57888888888888888876655555443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=89.63 E-value=36 Score=37.38 Aligned_cols=144 Identities=8% Similarity=-0.014 Sum_probs=85.7
Q ss_pred ccEEEEEeCCCeEEEEecCCCCc----eeEecCCCCcEEEEEECC-----CCCEEEEEeecCCCCceEEEEECC--CCe-
Q 002494 511 IQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSA-----DGTRLFSCGTSKEGESHLVEWNES--EGA- 578 (915)
Q Consensus 511 ~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~sp-----~g~~l~~~~~~~~~~~~i~~wd~~--~~~- 578 (915)
...|++|+..|.++||+...... ...-..-..+|-.+..-+ +...|++-. ...+.+|.+. .|.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLh-----P~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLH-----PRKLSVYSVSLVDGTV 111 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEec-----CCEEEEEEEEecCCCc
Confidence 36899999999999998754431 111122334666665432 334555543 5557777762 111
Q ss_pred ------eEEEecCC-CCCceEEEEEcCC-----CCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCE
Q 002494 579 ------IKRTYSGF-RKRSLGVVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (915)
Q Consensus 579 ------~~~~~~~~-~~~~v~~~~~sp~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 646 (915)
.+.....| -......++..|- ..++++-+.||.+.+|+-+.-.....+...- -.--+.|.+.-..
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~l---lPgPl~Y~~~tDs 188 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFL---LPGPLCYCPRTDS 188 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCC---CCcCeEEeecCCE
Confidence 11111112 1113333444332 2567778999999999987655444444422 1234889998889
Q ss_pred EEEEeCCCcEEEEEcC
Q 002494 647 LAVTTSDNGIKILANS 662 (915)
Q Consensus 647 l~s~~~dg~i~iwd~~ 662 (915)
+++++.+..+.-|...
T Consensus 189 fvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 189 FVTASSSWTLECYKYQ 204 (418)
T ss_pred EEEecCceeEEEecHH
Confidence 9999998888888754
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=89.63 E-value=33 Score=36.93 Aligned_cols=188 Identities=12% Similarity=0.149 Sum_probs=104.1
Q ss_pred EEEEEeCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecC--CCccE--EEEEe-CC---CeEEEEecCCCC-ceeEecC
Q 002494 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK--ESIQF--IFSTA-ID---GKIKAWLYDYLG-SRVDYDA 539 (915)
Q Consensus 469 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~~--l~s~~-~d---g~i~iwd~~~~~-~~~~~~~ 539 (915)
+++....++-+.+||+ .|+.++.+. .+..+.+.+... -+|+. |+.++ .+ ..|++|.++... ....+..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6777788889999996 566777664 245555543211 01222 33333 32 469999876422 2222211
Q ss_pred -------CCCcEEEEEE--CC-CCCEEEEEeecCCCCceEEEEECC---CC----eeEEEecCCCCCceEEEEEcCCCCE
Q 002494 540 -------PGNWCTMMAY--SA-DGTRLFSCGTSKEGESHLVEWNES---EG----AIKRTYSGFRKRSLGVVQFDTTRNR 602 (915)
Q Consensus 540 -------~~~~i~~~~~--sp-~g~~l~~~~~~~~~~~~i~~wd~~---~~----~~~~~~~~~~~~~v~~~~~sp~~~~ 602 (915)
....++.+|+ ++ +|.+.+.... .++.+..|.+. .+ +.+++|.... .+-.+.......+
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~ 221 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGR 221 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTE
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCC
Confidence 1123566665 44 5665554443 35556666553 33 4678887655 5788888888889
Q ss_pred EEEEeCCCcEEEEeCCC-----CceEEEEcCCCCCCCcceEEEc--CCC--CEEEEEeCCCcEEEEEcCCC
Q 002494 603 FLAAGDEFQIKFWDMDN-----MNMLTTVDADGGLPASPRLRFN--KEG--SLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 603 l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s--~~~--~~l~s~~~dg~i~iwd~~~~ 664 (915)
|+.+-++--|.-|+.+. +..+....+..-...|..++.- +++ -+|++.-.+++..||+....
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999988787787752 2233333332223356777764 333 34555556889999998754
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.46 E-value=18 Score=38.89 Aligned_cols=102 Identities=14% Similarity=0.177 Sum_probs=66.1
Q ss_pred CCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceee-eEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEE
Q 002494 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 405 ~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd 483 (915)
....++|.++.||+|.+.||+--.+.+|.+++....+.... ....+..+..|....|+.... ++..+..| +-+|-
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e---~A~i~~~G-~e~y~ 138 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE---IAFITDQG-IEFYQ 138 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee---EEEEecCC-eEEEE
Confidence 34667999999999999999999999999999854332111 011222344688999987644 44444333 55665
Q ss_pred cCC-CeeEEEecCCCCCEEEEEeecCCC
Q 002494 484 VVA-GRKQYTFEGHEAPVYSVCPHHKES 510 (915)
Q Consensus 484 ~~~-~~~~~~~~~~~~~v~~i~~~~~~~ 510 (915)
... .+.++..+.|...|+--.|.++..
T Consensus 139 v~pekrslRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 139 VLPEKRSLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred EchhhhhhhhhhhcccCccEEEEccccc
Confidence 433 233445556777787777777653
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=88.63 E-value=37 Score=36.21 Aligned_cols=109 Identities=9% Similarity=-0.005 Sum_probs=51.1
Q ss_pred EEEEEeCC-----CcEEEEEcCCCeeE---EEecCCCCCE--EEEEeecCCCccEEEEEeC-----CCeEEEEecCCCCc
Q 002494 469 CIVTCGDD-----KMIKVWDVVAGRKQ---YTFEGHEAPV--YSVCPHHKESIQFIFSTAI-----DGKIKAWLYDYLGS 533 (915)
Q Consensus 469 ~l~s~~~d-----~~i~vwd~~~~~~~---~~~~~~~~~v--~~i~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~ 533 (915)
+++.|+.+ ..+..+|+.+.+.. ..+..-..+. .+++.. ++.+.+.|+. ...+..||+.+.+-
T Consensus 75 lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~---~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 75 IYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK---DGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred EEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE---CCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 55666654 35667777665531 2221111111 122221 3356666664 23577788776543
Q ss_pred eeEecCCC-CcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeE
Q 002494 534 RVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (915)
Q Consensus 534 ~~~~~~~~-~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (915)
...-.... ......+..-+++..+.++.+......+.+||..+.+..
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 22111111 111222223456666666643222233678898876653
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.46 E-value=8.6 Score=41.72 Aligned_cols=137 Identities=12% Similarity=0.128 Sum_probs=81.0
Q ss_pred EEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCC--------CEEEEEeecCCCCceEEEEECCC-CeeEEE--e
Q 002494 515 FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--------TRLFSCGTSKEGESHLVEWNESE-GAIKRT--Y 583 (915)
Q Consensus 515 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g--------~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~--~ 583 (915)
..|+....++-.|+..++.+..+..+... -+.|.|+. ..|+..+ +..|.-.|.+- |..+.. +
T Consensus 484 ~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-----~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 484 LDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-----DYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred ecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-----ccceEEecccccCCceeeeee
Confidence 34455556666677776666666655543 45666643 2333322 44466666542 322221 2
Q ss_pred cCCC-CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 002494 584 SGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 584 ~~~~-~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 662 (915)
+... .....+. ......++++++..|.|++||.-..+....+++-+. .|..+..+.+|+++++.+. ..+.+-|+.
T Consensus 557 KdY~tKn~Fss~-~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 557 KDYKTKNKFSSG-MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred hhcccccccccc-ccccCceEEEecCCCceeeehhhcchhhhcCccccc--ceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 1111 1012222 233457899999999999999765555555555555 7888999999998877665 556666654
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.25 E-value=0.72 Score=52.94 Aligned_cols=164 Identities=15% Similarity=0.201 Sum_probs=92.3
Q ss_pred CCCCEEEEEEc----CCCCeEEEEEeCCCcEEEEEcC--CCceecccceeeeecccCcccccccccCCCccCeEEEEEcC
Q 002494 345 QGSNVMSMDFH----PQQQTILLVGTNVGDISLWEVG--SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (915)
Q Consensus 345 h~~~V~~v~fs----pd~~~ll~~gs~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 418 (915)
..+.|-.++|- |.+. -.-|.+.|||+. .|+......+++ .......+.-+.|.|
T Consensus 131 f~G~v~dl~fah~~~pk~~------~~vg~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR------RLVGELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVSWCP 190 (1283)
T ss_pred CCCCcccccccccCChHHH------HHhhhhheeehHhhccccccceEEee--------------cCcCCCCcceeeecc
Confidence 35667777763 3332 223678888875 344433322221 122233344555555
Q ss_pred ---CCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEE-----------EecCCCeEEEEEEeCCCcEEEEEc
Q 002494 419 ---DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA-----------FAHPNKQLCIVTCGDDKMIKVWDV 484 (915)
Q Consensus 419 ---d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~-----------~s~~~~~~~l~s~~~d~~i~vwd~ 484 (915)
+..++..+-.+++|++.+++.... ..+.+|...+.+++ .||||. .|+.++.||.++.|.+
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence 667777888889999888776332 13445766665554 579999 8999999998888765
Q ss_pred C-----CCeeEEEecCCCC-CEEEEEeecCC-----Cc--cEEEEEe-CCCeEEEEecCCCCce
Q 002494 485 V-----AGRKQYTFEGHEA-PVYSVCPHHKE-----SI--QFIFSTA-IDGKIKAWLYDYLGSR 534 (915)
Q Consensus 485 ~-----~~~~~~~~~~~~~-~v~~i~~~~~~-----~~--~~l~s~~-~dg~i~iwd~~~~~~~ 534 (915)
. ..++++.++.|++ +-.|.-++... -+ .++++++ .+..+++|.-...++.
T Consensus 265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3 2345556666663 22222222110 01 2344444 3566888876555554
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=88.05 E-value=3 Score=39.78 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=25.6
Q ss_pred cCeEEEEEcCCC------CEEEEEECCCeEEEEEecC
Q 002494 409 ISVNRCVWGPDG------LMLGVAFSKHIVHLYTYNP 439 (915)
Q Consensus 409 ~~v~~~~~spd~------~~l~s~~~dg~i~vwd~~~ 439 (915)
..|..++|||.| ..||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999943 4788889999999998654
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=88.02 E-value=41 Score=35.99 Aligned_cols=103 Identities=15% Similarity=0.117 Sum_probs=56.6
Q ss_pred CeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCee---EEEe----cCCCCCEEEEEeecC--CCccEEEEEeCC-----
Q 002494 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTF----EGHEAPVYSVCPHHK--ESIQFIFSTAID----- 520 (915)
Q Consensus 455 ~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~---~~~~----~~~~~~v~~i~~~~~--~~~~~l~s~~~d----- 520 (915)
..+.|+|.|||. +++ +...|.|++++ ..+.. +..+ .........++++|+ .++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~--l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 3 NPRSMAFLPDGR--LLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SEEEEEEETTSC--EEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CceEEEEeCCCc--EEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 467899999987 454 56699999999 55543 2222 124456788999884 233333333321
Q ss_pred ---CeEEEEecCCC-------Ccee-Eec---CCCCcEEEEEECCCCCEEEEEee
Q 002494 521 ---GKIKAWLYDYL-------GSRV-DYD---APGNWCTMMAYSADGTRLFSCGT 561 (915)
Q Consensus 521 ---g~i~iwd~~~~-------~~~~-~~~---~~~~~i~~~~~sp~g~~l~~~~~ 561 (915)
..|.-|..... +.+. ... ...+.-..++|.|||.+.++.+.
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 23444444333 1111 111 23456678999999976666654
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.91 E-value=6.4 Score=47.95 Aligned_cols=166 Identities=14% Similarity=0.210 Sum_probs=94.6
Q ss_pred cEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEE--
Q 002494 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV-- 415 (915)
Q Consensus 338 ~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-- 415 (915)
+.+..+.|...-..|-+-|.=.+.=+ +.|+.+.+|+..++..... +.+-+..|..+.
T Consensus 70 el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~Lv 128 (1311)
T KOG1900|consen 70 ELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTILKVGLV 128 (1311)
T ss_pred HHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhheeeeee
Confidence 33344444555555655554333333 4589999999998654332 233333444443
Q ss_pred ------EcCCCCEEEEEECCCeEEEEEecCCCcee------eeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEE
Q 002494 416 ------WGPDGLMLGVAFSKHIVHLYTYNPTGELR------QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 416 ------~spd~~~l~s~~~dg~i~vwd~~~~~~~~------~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd 483 (915)
|-|.=++++..+.--.|.++-+.-.+... ....+....-.|+|+....+|+ ++-+|.|| .+|.
T Consensus 129 kPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR---IF~~G~dg--~lyE 203 (1311)
T KOG1900|consen 129 KPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR---IFFAGRDG--NLYE 203 (1311)
T ss_pred cCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc---EEEeecCC--CEEE
Confidence 33344455555555567776654322211 1112223355788999888887 44456667 4444
Q ss_pred cC----CC---e-e----------------EEEec-CCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCC
Q 002494 484 VV----AG---R-K----------------QYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (915)
Q Consensus 484 ~~----~~---~-~----------------~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 531 (915)
+. +| + + +..+. .+..+|..+.+..+. ..+.+-+..|+|.+||+...
T Consensus 204 l~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 204 LVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred EEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccCC
Confidence 32 11 1 1 11122 456789999886543 68889999999999999763
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=87.48 E-value=38 Score=38.38 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=64.8
Q ss_pred EEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCCC--CceEEEEEcCCCCEEEEEe--------------CCC
Q 002494 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAG--------------DEF 610 (915)
Q Consensus 547 ~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~s~~--------------~dg 610 (915)
+...++|.+++... ..+..+|.. |+.+..+..... ..=+.+..-|+|++|+.+. .|
T Consensus 153 ~~~l~nG~ll~~~~------~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D- 224 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG------NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVED- 224 (477)
T ss_dssp EEE-TTS-EEEEEB------TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S--
T ss_pred eeEcCCCCEEEecC------CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecC-
Confidence 56678998887553 458888876 666655543321 0124577889999988777 23
Q ss_pred cEEEEeCCCCceEEEEcCCCCC-------------------------CCcceEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 002494 611 QIKFWDMDNMNMLTTVDADGGL-------------------------PASPRLRFNK-EGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~-------------------------~~v~~v~~s~-~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
.|..+| .+|+.+..+....+. ..++++.+.+ ++.+|+++-.-..|...|..++
T Consensus 225 ~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 225 VIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred EEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence 466677 778777765421110 1367899999 5556666555668888888787
Q ss_pred ceeeeeccCCC
Q 002494 665 VRLLRMLEGRA 675 (915)
Q Consensus 665 ~~~~~~~~~~~ 675 (915)
++...+..+.
T Consensus 304 -~i~Wilg~~~ 313 (477)
T PF05935_consen 304 -KIKWILGPPG 313 (477)
T ss_dssp --EEEEES-ST
T ss_pred -cEEEEeCCCC
Confidence 6666665544
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.45 E-value=45 Score=35.77 Aligned_cols=152 Identities=7% Similarity=-0.054 Sum_probs=81.3
Q ss_pred CCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCc--eeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEEC
Q 002494 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (915)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~ 574 (915)
...+.++.+.++ +.+ +..+..|.+..- .+.... ..........++++.+.++++.++++. .+.+++-..
T Consensus 172 ~g~~~~i~~~~~--g~~-v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPD--GKY-VAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCC--CeE-EEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccC
Confidence 456778887664 344 444555654421 112211 112223445789999999998877654 344433233
Q ss_pred CCCeeEEEecCC---CCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCC-CCCCcceEEEcCCCCEEEEE
Q 002494 575 SEGAIKRTYSGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-GLPASPRLRFNKEGSLLAVT 650 (915)
Q Consensus 575 ~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~s~ 650 (915)
..|..-.....+ ....+..+.+.|++.. ++++.+|.+. .....++.-....... -....+.+.|..+++.++ .
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L 319 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCE-EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence 444332222211 1125778889987764 4555677554 4445454433332211 112467778777666655 4
Q ss_pred eCCCcEEEEE
Q 002494 651 TSDNGIKILA 660 (915)
Q Consensus 651 ~~dg~i~iwd 660 (915)
+..|.|--|+
T Consensus 320 G~~G~il~~~ 329 (334)
T PRK13684 320 GQRGVLLRYV 329 (334)
T ss_pred CCCceEEEec
Confidence 4568777665
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=87.35 E-value=2.5 Score=28.40 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=23.1
Q ss_pred CCCCEEEEEEcCCCCeEEEEEeCC--CcEEEE
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNV--GDISLW 374 (915)
Q Consensus 345 h~~~V~~v~fspd~~~ll~~gs~d--g~v~iw 374 (915)
......+..|||||+++++++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 456788999999999888888777 766666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=87.16 E-value=34 Score=37.26 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=76.9
Q ss_pred CeeEEEEecCCCeEEEEEEe-----------CCC-cEEEEEcCC--Ce--eEEEecCCCCCEEEEEeecCCCccEEEEEe
Q 002494 455 GVNDIAFAHPNKQLCIVTCG-----------DDK-MIKVWDVVA--GR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (915)
Q Consensus 455 ~v~~~~~s~~~~~~~l~s~~-----------~d~-~i~vwd~~~--~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~ 518 (915)
....|+|.++|. ++++-. ..+ .|.+++-.+ |+ ....+...-.....+++.+ ++ ++.++
T Consensus 15 ~P~~ia~d~~G~--l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~--~G--lyV~~ 88 (367)
T TIGR02604 15 NPIAVCFDERGR--LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV--GG--VYVAT 88 (367)
T ss_pred CCceeeECCCCC--EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec--CC--EEEeC
Confidence 467889999988 454432 223 677776432 33 2234433334456777765 33 44444
Q ss_pred CCCeEEEEecCCC-----CceeE---ecC----CCCcEEEEEECCCCCEEEEEeecCC---------------CCceEEE
Q 002494 519 IDGKIKAWLYDYL-----GSRVD---YDA----PGNWCTMMAYSADGTRLFSCGTSKE---------------GESHLVE 571 (915)
Q Consensus 519 ~dg~i~iwd~~~~-----~~~~~---~~~----~~~~i~~~~~sp~g~~l~~~~~~~~---------------~~~~i~~ 571 (915)
.....++.|.+.. +.... +.. +.+....++|.|||++.++.+.... ..+.|..
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 4444444454321 11111 111 1235778999999987665542100 0145666
Q ss_pred EECCCCeeEEEecCCCCCceEEEEEcCCCCEEEEE
Q 002494 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (915)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 606 (915)
+|..+++....-.+.. ....++|+|+|+++++-
T Consensus 169 ~~pdg~~~e~~a~G~r--np~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 169 YNPDGGKLRVVAHGFQ--NPYGHSVDSWGDVFFCD 201 (367)
T ss_pred EecCCCeEEEEecCcC--CCccceECCCCCEEEEc
Confidence 6766554432223332 46678999988876653
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=87.12 E-value=10 Score=38.08 Aligned_cols=146 Identities=13% Similarity=0.121 Sum_probs=82.5
Q ss_pred EEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCC----CeeEEEec-CCCCCceEEEEEcC
Q 002494 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAIKRTYS-GFRKRSLGVVQFDT 598 (915)
Q Consensus 524 ~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~----~~~~~~~~-~~~~~~v~~~~~sp 598 (915)
.+||+.+.+..-........+.+-++-+||+.+.+++. .++...+++++..+ ......-. -...........-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 46888776544332223334555567899999988874 44667788888654 11111100 01112444566678
Q ss_pred CCCEEEEEeCCC-cEEEEeCCC-CceEEEE---cC---CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002494 599 TRNRFLAAGDEF-QIKFWDMDN-MNMLTTV---DA---DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670 (915)
Q Consensus 599 ~~~~l~s~~~dg-~i~iwd~~~-~~~~~~~---~~---~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 670 (915)
||+.|+.||.+. +..+|.-.. ......+ .. .....---.+-..|+|++++.+..+. .|||..++ +.++.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n-~v~~~ 204 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN-TVVRT 204 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC-eEEee
Confidence 999999988654 455665432 1111111 10 11111233567789999999887654 45788877 55555
Q ss_pred ccC
Q 002494 671 LEG 673 (915)
Q Consensus 671 ~~~ 673 (915)
+..
T Consensus 205 lP~ 207 (243)
T PF07250_consen 205 LPD 207 (243)
T ss_pred CCC
Confidence 543
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.85 E-value=16 Score=39.11 Aligned_cols=163 Identities=13% Similarity=0.122 Sum_probs=90.9
Q ss_pred CCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccC----Cee-EEEEecCCCeEEEEEEeCCCcE
Q 002494 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG----GVN-DIAFAHPNKQLCIVTCGDDKMI 479 (915)
Q Consensus 405 ~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~----~v~-~~~~s~~~~~~~l~s~~~d~~i 479 (915)
......|..+-..|||+.|..-+. .++.++++.+...-. ........+ .|+ .+..-..|. -+..++.||-|
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~-rkl~~dspg~~~~~Vte~l~lL~Gg~--SLLv~~~dG~v 292 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQI-RKLVDDSPGDSRHQVTEQLYLLSGGF--SLLVVHEDGLV 292 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccch-hhhhhcCCCchHHHHHHHHHHHhCce--eEEEEcCCCce
Confidence 334456777788999998877665 678899887632211 001111111 122 111122333 46778888988
Q ss_pred EEE-EcCCC-ee----EEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCC
Q 002494 480 KVW-DVVAG-RK----QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG 553 (915)
Q Consensus 480 ~vw-d~~~~-~~----~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g 553 (915)
.-| |++.+ .+ ++.++-...++..+ .|+.+.+-+++-+.+|++.++.....+... +...-..+.-+++||++
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~ 369 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQ 369 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceee--ccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCccc
Confidence 877 44432 11 22222222333333 344444667888888988887644333222 22222356678999999
Q ss_pred CEEEEEeecCCCCceEEEEECCCCee
Q 002494 554 TRLFSCGTSKEGESHLVEWNESEGAI 579 (915)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (915)
.++++-. .+.++++.+++..+
T Consensus 370 ~~Ll~e~-----~gki~~~~l~Nr~P 390 (733)
T COG4590 370 AYLLSED-----QGKIRLAQLENRNP 390 (733)
T ss_pred chheeec-----CCceEEEEecCCCC
Confidence 9988653 55688887765543
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=86.79 E-value=20 Score=39.06 Aligned_cols=101 Identities=13% Similarity=0.137 Sum_probs=51.2
Q ss_pred CCEEEEEEcCCCCeEEEEEe-----------CCC-cEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEE
Q 002494 347 SNVMSMDFHPQQQTILLVGT-----------NVG-DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (915)
Q Consensus 347 ~~V~~v~fspd~~~ll~~gs-----------~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 414 (915)
....+|+|.++|+ ++++-. ..+ .|.+++-.++.-... +.. ++...-.....+
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d-~~~--------------vfa~~l~~p~Gi 77 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD-KSN--------------VFAEELSMVTGL 77 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc-eeE--------------EeecCCCCccce
Confidence 4577889999997 444421 123 676766543321111 001 122223356788
Q ss_pred EEcCCCCEEEEEECCCeEEEE-EecCCC----ceeeeE-Eeec----ccCCeeEEEEecCCC
Q 002494 415 VWGPDGLMLGVAFSKHIVHLY-TYNPTG----ELRQHL-EIDA----HVGGVNDIAFAHPNK 466 (915)
Q Consensus 415 ~~spd~~~l~s~~~dg~i~vw-d~~~~~----~~~~~~-~~~~----h~~~v~~~~~s~~~~ 466 (915)
++.++| .++ ++.. .|..+ +.+... ...... .+.. +......++|.|||.
T Consensus 78 ~~~~~G-lyV-~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~ 136 (367)
T TIGR02604 78 AVAVGG-VYV-ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW 136 (367)
T ss_pred eEecCC-EEE-eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC
Confidence 999998 444 3343 34433 443211 111111 1211 133477899999997
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=86.23 E-value=47 Score=34.78 Aligned_cols=281 Identities=10% Similarity=0.070 Sum_probs=121.5
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEE
Q 002494 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (915)
Q Consensus 344 ~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l 423 (915)
.....+.+|.|..+.. -.++|. .|. |+...+|-.. |..... ..-..-.-...++.|..+ ..+
T Consensus 14 ~t~~~l~dV~F~d~~~-G~~VG~-~g~--il~T~DGG~t-------W~~~~~------~~~~~~~~~l~~I~f~~~-~g~ 75 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNH-GWAVGA-YGT--ILKTTDGGKT-------WQPVSL------DLDNPFDYHLNSISFDGN-EGW 75 (302)
T ss_dssp S-SS-EEEEEESSSS--EEEEET-TTE--EEEESSTTSS--------EE-----------S-----EEEEEEEETT-EEE
T ss_pred CCCCceEEEEEecCCE-EEEEec-CCE--EEEECCCCcc-------cccccc------CCCccceeeEEEEEecCC-ceE
Confidence 3456899999996554 456664 453 3444433211 111000 000001223567777643 344
Q ss_pred EEEECCCeEEEEEecCCCceeeeEEee-cccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCee-EEEecCCCCCEE
Q 002494 424 GVAFSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVY 501 (915)
Q Consensus 424 ~s~~~dg~i~vwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~ 501 (915)
++ +..+. .+...+.|+.-... .+. .-.+....+....++. .++ ++..|.|+.=. ..|+. ......-...+.
T Consensus 76 iv-G~~g~-ll~T~DgG~tW~~v-~l~~~lpgs~~~i~~l~~~~--~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~ 148 (302)
T PF14870_consen 76 IV-GEPGL-LLHTTDGGKTWERV-PLSSKLPGSPFGITALGDGS--AEL-AGDRGAIYRTT-DGGKTWQAVVSETSGSIN 148 (302)
T ss_dssp EE-EETTE-EEEESSTTSS-EE-----TT-SS-EEEEEEEETTE--EEE-EETT--EEEES-STTSSEEEEE-S----EE
T ss_pred EE-cCCce-EEEecCCCCCcEEe-ecCCCCCCCeeEEEEcCCCc--EEE-EcCCCcEEEeC-CCCCCeeEcccCCcceeE
Confidence 44 44453 34444444443322 111 1123334444444443 333 34445543321 23332 222334446677
Q ss_pred EEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEE-CCCCeeE
Q 002494 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN-ESEGAIK 580 (915)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd-~~~~~~~ 580 (915)
.+...+ +|.++++++......-||--...-..........+.++.|+|++...+.+. .+.|+.=+ ....+.-
T Consensus 149 ~~~r~~--dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~-----Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 149 DITRSS--DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLAR-----GGQIQFSDDPDDGETW 221 (302)
T ss_dssp EEEE-T--TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEET-----TTEEEEEE-TTEEEEE
T ss_pred eEEECC--CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeC-----CcEEEEccCCCCcccc
Confidence 766554 557777776666667786543222333333567899999999988766552 55576666 2222221
Q ss_pred EE--ecC-CCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcC-CCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 002494 581 RT--YSG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-DGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (915)
Q Consensus 581 ~~--~~~-~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~s~~~dg~i 656 (915)
.. ... .....+..++|.+++...++|+ .|.+ +.....|+.=..... ..-...++.+.|.++.+-++ .+.+|.|
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~l 298 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVL 298 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEE
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEE
Confidence 11 111 1222478899998877666555 4544 445555655444432 11122577888876555454 4567876
Q ss_pred EEE
Q 002494 657 KIL 659 (915)
Q Consensus 657 ~iw 659 (915)
--|
T Consensus 299 l~~ 301 (302)
T PF14870_consen 299 LRY 301 (302)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.05 E-value=23 Score=40.73 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=46.5
Q ss_pred chhhhccccCCCcceeecCCCCCceeeecCCCcccE-EEEec-CCCCEEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 002494 304 DHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTV-VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWE 375 (915)
Q Consensus 304 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~d~~~~~~-~~~l~-h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd 375 (915)
+.+....+.+......|+-++-.++....|..|.+. ...++ -..+|.+.+||.|.+.+ +.-..+..|.+++
T Consensus 68 dkl~s~~hf~~~~~~~f~~~~gDii~~~~dp~p~e~~~eivG~v~nGIvaa~wS~DE~~~-cvvt~~r~il~~~ 140 (1243)
T COG5290 68 DKLLSFKHFHVLTFEYFLIDEGDIIHLVNDPTPAELEMEIVGKVSNGIVAASWSADEKTW-CVVTSTREILLFD 140 (1243)
T ss_pred hHhhhhhhhhhhheeeEEecCCcEEEEEcCCCcccchhhhhccccCceEEEeeccCCceE-EEEEcCceEEEEe
Confidence 345555666677777788888777777777665544 33333 46789999999998843 3334456666655
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.80 E-value=44 Score=34.03 Aligned_cols=194 Identities=12% Similarity=0.084 Sum_probs=108.9
Q ss_pred cCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEEEecC--CCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCC
Q 002494 453 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (915)
Q Consensus 453 ~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~ 530 (915)
.+-+.++.++.+ +...+..+.-++|.|+.+......+.. -.+--.++.. .|++...+..|.-+.+.|+.+
T Consensus 86 ~~l~~Dv~vse~----yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v----sGn~aYVadlddgfLivdvsd 157 (370)
T COG5276 86 RDLFADVRVSEE----YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV----SGNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hhhhheeEeccc----EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe----cCCEEEEeeccCcEEEEECCC
Confidence 445777888654 566677778899999987543322211 1233334433 446888888777777889887
Q ss_pred CCcee---EecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCe---eEEEecCCCCCceEEEEEcCCCCEEE
Q 002494 531 LGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQFDTTRNRFL 604 (915)
Q Consensus 531 ~~~~~---~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~ 604 (915)
...+. +..........++.|-+ +-..+.. ++-+.+.|+.... .+..+... ..+.++..+++..+++
T Consensus 158 pssP~lagrya~~~~d~~~v~ISGn--~AYvA~~----d~GL~ivDVSnp~sPvli~~~n~g--~g~~sv~vsdnr~y~v 229 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAISGN--YAYVAWR----DGGLTIVDVSNPHSPVLIGSYNTG--PGTYSVSVSDNRAYLV 229 (370)
T ss_pred CCCceeeeeeccCCCCceeEEEecC--eEEEEEe----CCCeEEEEccCCCCCeEEEEEecC--CceEEEEecCCeeEEE
Confidence 66554 33334444456666544 4333333 3448888886543 23322221 1577777777655554
Q ss_pred EEeCCCcEEEEeCCCCceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 605 AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 605 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
...+ -+.+-|..+.+....+.......++.--.+.-.+++...+..+..+-+-|+.+.
T Consensus 230 vy~e--gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 230 VYDE--GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred Eccc--ceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCC
Confidence 4433 477788877664444433222212211123334667777766666666666543
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=85.63 E-value=57 Score=35.20 Aligned_cols=42 Identities=10% Similarity=-0.103 Sum_probs=19.0
Q ss_pred CeEEEEecCCCCceeEecCCC-CcEEEEEECCCCCEEEEEeec
Q 002494 521 GKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTS 562 (915)
Q Consensus 521 g~i~iwd~~~~~~~~~~~~~~-~~i~~~~~sp~g~~l~~~~~~ 562 (915)
..+.+||..+.+-...-.... .........-+++..+.++..
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 457788876654322111111 111111222456666777653
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.42 E-value=10 Score=36.21 Aligned_cols=153 Identities=13% Similarity=0.082 Sum_probs=84.4
Q ss_pred CccEEEEEeCCC--eEEEEecCCCCceeEecCCCCcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecCCC
Q 002494 510 SIQFIFSTAIDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (915)
Q Consensus 510 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (915)
+|.++.+.+.-| .|++||+++++...........+..=-...-|.++..-+. .++.-..+|.++-+++..+.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCC
Confidence 346677766643 5999999988776654433222211111122333333332 36677888988877776665433
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCC---CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 002494 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL---PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 588 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
. =..++ .|+..|+.+....+++.-|.++-....++...... ..++.+.|- ||.+.|-.-.+..|...+..+|
T Consensus 132 e--GWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 132 E--GWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred c--ceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence 2 23333 35555666666667888887765544444322111 123444443 5666666656666666677777
Q ss_pred ceeeeec
Q 002494 665 VRLLRML 671 (915)
Q Consensus 665 ~~~~~~~ 671 (915)
+....+
T Consensus 207 -rV~~wi 212 (262)
T COG3823 207 -RVVAWI 212 (262)
T ss_pred -cEEEEE
Confidence 444443
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=85.30 E-value=48 Score=34.10 Aligned_cols=229 Identities=12% Similarity=0.137 Sum_probs=124.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEecC------CCceeeeEEeec-----ccCCeeEEEEecCCCe----------E
Q 002494 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNP------TGELRQHLEIDA-----HVGGVNDIAFAHPNKQ----------L 468 (915)
Q Consensus 410 ~v~~~~~spd~~~l~s~~~dg~i~vwd~~~------~~~~~~~~~~~~-----h~~~v~~~~~s~~~~~----------~ 468 (915)
.-+.++++|.+.+-++....+...+||... .+.+. ..+.. .....+.+.|+..... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~--vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLV--VVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceE--EEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 457899999998888888889999999861 11111 12221 2345777788744320 1
Q ss_pred EEEEEeCCCcEEEEEcCCCee-----EEEecC-CCCCE-EEEEeecCCCccEEEEEe-CCCeEEEEecCCCCceeE--ec
Q 002494 469 CIVTCGDDKMIKVWDVVAGRK-----QYTFEG-HEAPV-YSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGSRVD--YD 538 (915)
Q Consensus 469 ~l~s~~~d~~i~vwd~~~~~~-----~~~~~~-~~~~v-~~i~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~--~~ 538 (915)
.++.++.||+|.-|...-+.. ...+.. ....| ..+++.....+.+|..+. ..++|.+||-.-...... +.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 367788999999998532221 122221 12333 345555443334554443 578899997543221110 10
Q ss_pred CC---CC-cEEEEEECCCCCEEEEEee---------cCCCCceEEEEECCCCeeEEEecCCC-CCceEEEEEcC------
Q 002494 539 AP---GN-WCTMMAYSADGTRLFSCGT---------SKEGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDT------ 598 (915)
Q Consensus 539 ~~---~~-~i~~~~~sp~g~~l~~~~~---------~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~sp------ 598 (915)
.. .. .-..+.- -.++..++-.. .+.+.+.|-++|.. |..++++.... -..-+.++..|
T Consensus 182 DP~iPagyAPFnIqn-ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 182 DPALPAGYAPFNVQN-LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCCCcceEE-ECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 00 00 0001100 01222222111 11245789999976 77877774221 11345566544
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEEcCCCCC----CCcceEEEcC
Q 002494 599 TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL----PASPRLRFNK 642 (915)
Q Consensus 599 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~v~~s~ 642 (915)
.|.+|+---.||+|..+|..+++.+..+....+. ..++.+.|..
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 3455554446999999999999888777654332 2345666654
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=85.27 E-value=4.5 Score=40.18 Aligned_cols=68 Identities=9% Similarity=0.180 Sum_probs=50.3
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceEEEE-------cC-----CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 002494 596 FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-------DA-----DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (915)
Q Consensus 596 ~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~-----~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 663 (915)
+..++.++++.+.+|.+++||+.+++.+..- .. ......|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4557889999999999999999987655332 10 02334788889998888877765 57889998764
Q ss_pred C
Q 002494 664 G 664 (915)
Q Consensus 664 ~ 664 (915)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.54 E-value=50 Score=33.63 Aligned_cols=168 Identities=11% Similarity=0.032 Sum_probs=98.4
Q ss_pred EEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcC
Q 002494 339 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (915)
Q Consensus 339 ~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 418 (915)
.+....-.+-+..+.++.+- ++.+..+.-++|.|+.+........ .+. ..+--.+ |.-
T Consensus 79 l~~~i~~~~l~~Dv~vse~y---vyvad~ssGL~IvDIS~P~sP~~~~----------------~ln-t~gyayg--v~v 136 (370)
T COG5276 79 LLSVINARDLFADVRVSEEY---VYVADWSSGLRIVDISTPDSPTLIG----------------FLN-TDGYAYG--VYV 136 (370)
T ss_pred eEEEEehhhhhheeEecccE---EEEEcCCCceEEEeccCCCCcceec----------------ccc-CCceEEE--EEe
Confidence 34455567778888888653 4455666778999988765332111 011 1122233 444
Q ss_pred CCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCee---EEEecC
Q 002494 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEG 495 (915)
Q Consensus 419 d~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~ 495 (915)
.|++...+..|.-..+.|+.+.........+......-+.++.| |+ +-..+..|+-+.+.|+.+... +....
T Consensus 137 sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn--~AYvA~~d~GL~ivDVSnp~sPvli~~~n- 211 (370)
T COG5276 137 SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GN--YAYVAWRDGGLTIVDVSNPHSPVLIGSYN- 211 (370)
T ss_pred cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cC--eEEEEEeCCCeEEEEccCCCCCeEEEEEe-
Confidence 68888888866667788988766543322344444555778886 44 456677889999999876432 22221
Q ss_pred CCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEe
Q 002494 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (915)
Q Consensus 496 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 537 (915)
....+.++..+++ +....-.+--+.+-|....+.+..+
T Consensus 212 ~g~g~~sv~vsdn----r~y~vvy~egvlivd~s~~ssp~~~ 249 (370)
T COG5276 212 TGPGTYSVSVSDN----RAYLVVYDEGVLIVDVSGPSSPTVF 249 (370)
T ss_pred cCCceEEEEecCC----eeEEEEcccceEEEecCCCCCceEe
Confidence 2336677766553 3333334445666677666544433
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=84.50 E-value=2.2 Score=28.65 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=20.2
Q ss_pred CCceeEEEEecCCCeEEEec--C--CeeEEe
Q 002494 840 EESAACIALSKNDSYVMSAS--G--GKVSLF 866 (915)
Q Consensus 840 ~~~I~~l~~S~dg~~L~s~s--d--~~v~vw 866 (915)
.+.-...+|||||++|+.++ + |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 56677899999999999777 5 555555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.31 E-value=19 Score=44.14 Aligned_cols=141 Identities=14% Similarity=0.249 Sum_probs=86.9
Q ss_pred eCCCcEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCc------cEEEEEeCCCeEEEEecCC----CCc-----eeEec
Q 002494 474 GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI------QFIFSTAIDGKIKAWLYDY----LGS-----RVDYD 538 (915)
Q Consensus 474 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~------~~l~s~~~dg~i~iwd~~~----~~~-----~~~~~ 538 (915)
+-|+.+.+|+..++.....+.+-+..|..+....-..| ++++.-+.--.|.++-+.. ... ...+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35788999999998777777777777776653321122 3444444444455543221 111 12233
Q ss_pred CCCCcEEEEEECCCCCEEEEEeecCCCCceEEE--EECCCC---e-e----------------EEEecCCCCCceEEEEE
Q 002494 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVE--WNESEG---A-I----------------KRTYSGFRKRSLGVVQF 596 (915)
Q Consensus 539 ~~~~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~--wd~~~~---~-~----------------~~~~~~~~~~~v~~~~~ 596 (915)
..+..|.++....+|+.+++|- ++.++- |...+| + + +-.+.+....+|..+..
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-----dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I 250 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-----DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI 250 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-----CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence 4466889999888998887764 443432 222211 1 0 11233233348999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCC
Q 002494 597 DTTRNRFLAAGDEFQIKFWDMDN 619 (915)
Q Consensus 597 sp~~~~l~s~~~dg~i~iwd~~~ 619 (915)
....+.+++-++.|+|.+||+..
T Consensus 251 D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 251 DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccceeeeeccCceEEEEEccC
Confidence 98888999999999999999976
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.89 E-value=79 Score=35.43 Aligned_cols=275 Identities=15% Similarity=0.100 Sum_probs=131.8
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccCCCccCeEEEEEcCCCCEE
Q 002494 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (915)
Q Consensus 344 ~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l 423 (915)
-....|.++.+.-.|. +-+|+.|| +..||..+++.+.... .....+|..+.-+-.| .|
T Consensus 162 l~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg-~L 219 (671)
T COG3292 162 LKDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQG-RL 219 (671)
T ss_pred ccCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcC-cE
Confidence 3567899999999997 34577666 5667877776654211 1122455555555555 45
Q ss_pred EEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEEEEEeCCCcEEEEEcCCCeeEE-EecCCC--CCE
Q 002494 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHE--APV 500 (915)
Q Consensus 424 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~--~~v 500 (915)
..|+.+| |++.+.++..... . -..-..+.|..+.-..+|. +-.|+..|..+. ....+.... ..+.|. +.|
T Consensus 220 WVGTdqG-v~~~e~~G~~~sn-~-~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~v 292 (671)
T COG3292 220 WVGTDQG-VYLQEAEGWRASN-W-GPMLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTV 292 (671)
T ss_pred EEEeccc-eEEEchhhccccc-c-CCCCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCccccc
Confidence 5666655 5666655421110 0 0011233454444444454 444555554332 222222211 112222 233
Q ss_pred EEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecCCCCcEEEEEECC--CCCEEEEEeecCCCCceEEEEECCCCe
Q 002494 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWNESEGA 578 (915)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~sp--~g~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (915)
.++.. +.+| -+-+++.+|.+++-+..-..........+..+..++.+| .+..+-... ..+.+.+-+-.+|.
T Consensus 293 nsL~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~ 365 (671)
T COG3292 293 NSLWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGE 365 (671)
T ss_pred cceee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCc
Confidence 33333 3343 356666676666543221111111111111111112222 111111111 02234455556676
Q ss_pred eEEEecCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEEEEcCCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 002494 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (915)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~ 657 (915)
.++....-.+..|+.+++..+|. +-.++...-+..|+..+ +.......+. ....|..+.=.|+++ +..|+.+|.++
T Consensus 366 ~v~sv~q~Rg~nit~~~~d~~g~-lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 366 LVRSVHQLRGMNITTTLEDSRGR-LWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred EEEEeeeccccccchhhhccCCc-EEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEe
Confidence 66665444444677777777554 55555443356677666 3333333222 123677787788888 77788888664
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=83.75 E-value=6 Score=45.88 Aligned_cols=135 Identities=11% Similarity=0.131 Sum_probs=76.8
Q ss_pred CEEEEEEcC-CCCeEEEEEeCCCcEEEEEcCCCceecccceeeeeccc-Cc-ccccccccCCCccCeEEEEEc--CCCCE
Q 002494 348 NVMSMDFHP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISA-AS-MPLQNALLNDAAISVNRCVWG--PDGLM 422 (915)
Q Consensus 348 ~V~~v~fsp-d~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~v~~~~~s--pd~~~ 422 (915)
.|+.|.... -+..+|+.|..||.|.+|.+++-....... .-+.+. .. ....+.....-...+++++++ ...++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceE
Confidence 344444332 233478889999999999874311000000 000000 00 000111122345589999998 78889
Q ss_pred EEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCC----eEEEEEEeCCCcEEEEEc
Q 002494 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK----QLCIVTCGDDKMIKVWDV 484 (915)
Q Consensus 423 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~----~~~l~s~~~d~~i~vwd~ 484 (915)
||+++....|.||-......-.....-..|...|-+|+|.++.. ...+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99998888888887655211111101112556799999987651 125778888999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.11 E-value=7.3 Score=46.60 Aligned_cols=149 Identities=10% Similarity=-0.059 Sum_probs=92.2
Q ss_pred ccCeEEEEEcCCCCEEEEEE--CCCeEEEEEecCCCcee--eeEEee------cccCCeeEEEEecCCCeEEEEEEeCCC
Q 002494 408 AISVNRCVWGPDGLMLGVAF--SKHIVHLYTYNPTGELR--QHLEID------AHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (915)
Q Consensus 408 ~~~v~~~~~spd~~~l~s~~--~dg~i~vwd~~~~~~~~--~~~~~~------~h~~~v~~~~~s~~~~~~~l~s~~~d~ 477 (915)
.-+|..+...+|++..++.. .+-.|..||+++-..-. ....+. .......++.|+|.-.. ..+.+..|+
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~-n~av~l~dl 178 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL-NSAVDLSDL 178 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc-hhhhhcccc
Confidence 34566677778877665543 33478899987532211 011111 12234668889887553 466778899
Q ss_pred cEEEEEcCCCeeEEEecCCCCCEEEEEeecCCCccEEEEEeCCCeEEEEecCCCCceeEecC----CCCcEEEEEECCCC
Q 002494 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA----PGNWCTMMAYSADG 553 (915)
Q Consensus 478 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~sp~g 553 (915)
.|++..+........--......++++|+|.+ ..++.|-..|++.-|-..-. ....+.. ....|.+++|-...
T Consensus 179 sl~V~~~~~~~~~v~s~p~t~~~Tav~WSprG--KQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRG--KQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred chhhhhhhhhhhhhcccCcccceeeEEecccc--ceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecce
Confidence 99988765433222111345678899998854 78999999999988864422 1111111 23578999998887
Q ss_pred CEEEEEe
Q 002494 554 TRLFSCG 560 (915)
Q Consensus 554 ~~l~~~~ 560 (915)
.++++-+
T Consensus 256 eflvvy~ 262 (1405)
T KOG3630|consen 256 EFLVVYG 262 (1405)
T ss_pred eEEEEec
Confidence 7776544
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=82.94 E-value=7.3 Score=38.69 Aligned_cols=72 Identities=15% Similarity=0.241 Sum_probs=48.8
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeeeecccCcccccccccC-------CCccCeEEEEEcCCCCEEEEE
Q 002494 354 FHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-------DAAISVNRCVWGPDGLMLGVA 426 (915)
Q Consensus 354 fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~spd~~~l~s~ 426 (915)
+..++.+ |.+-+.+|.+++||+.+++.+... +.+ ..++. .....|..+.++.+|.-+++-
T Consensus 18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si-----------~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSI-----------APLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccH-----------HHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 3446665 555678999999999998876542 110 01111 466778899999888877766
Q ss_pred ECCCeEEEEEecC
Q 002494 427 FSKHIVHLYTYNP 439 (915)
Q Consensus 427 ~~dg~i~vwd~~~ 439 (915)
+ +|..+.|+.+-
T Consensus 85 s-ng~~y~y~~~L 96 (219)
T PF07569_consen 85 S-NGDSYSYSPDL 96 (219)
T ss_pred e-CCCEEEecccc
Confidence 5 47788888654
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=82.72 E-value=92 Score=35.30 Aligned_cols=150 Identities=7% Similarity=-0.044 Sum_probs=71.7
Q ss_pred EEEEEeCC-----CcEEEEEcCCCeeEEEecC----CCCCEEEEEeecCCCccEEEEEeCCC-----eEEEEecCCCCce
Q 002494 469 CIVTCGDD-----KMIKVWDVVAGRKQYTFEG----HEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYLGSR 534 (915)
Q Consensus 469 ~l~s~~~d-----~~i~vwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~ 534 (915)
+++.|+.+ ..+.+||+.+.+....-.. ....-.+++.. ++++++.|+.++ .+..||+.+..-.
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~---~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD---EENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE---CCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 55566654 3588899887654321110 11111122221 335777777543 3567776654322
Q ss_pred eEec---CCC-CcEEEEEECCCCCEEEEEeecCCCCceEEEEECCCCeeEEEecC---CCCCceEEEEEcCCCCEEEEEe
Q 002494 535 VDYD---APG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG---FRKRSLGVVQFDTTRNRFLAAG 607 (915)
Q Consensus 535 ~~~~---~~~-~~i~~~~~sp~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~s~~ 607 (915)
..-. ... ..-..++. -+++..+.++.++.....+.+||+.+.+....-.. .......+++ .-+++.++.|+
T Consensus 308 ~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG 385 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGG 385 (470)
T ss_pred eCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECC
Confidence 1100 000 01111222 35666666664332235689999988765433211 1110112222 22566777777
Q ss_pred CC--------------CcEEEEeCCCCceE
Q 002494 608 DE--------------FQIKFWDMDNMNML 623 (915)
Q Consensus 608 ~d--------------g~i~iwd~~~~~~~ 623 (915)
.+ +.+.+||+.+.+-.
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCEEE
Confidence 42 24788898876543
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=82.66 E-value=21 Score=34.65 Aligned_cols=126 Identities=19% Similarity=0.300 Sum_probs=70.6
Q ss_pred CceeeccCCCceeEeecCCCCCccceeEeecCCccCCCceEEEEEecCCceEEEeecc---c---eeEE---eecccccC
Q 002494 736 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN---A---VHKL---WKWQRTER 806 (915)
Q Consensus 736 g~~la~~~~~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~d---g---~v~i---W~l~~~~~ 806 (915)
+.++++++.++|.+|++........+ +++ .-+.|..++++..|.||+|.=++ . .+|+ |+.....-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~---~F~---Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~ 102 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLC---TFS---TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEEN 102 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeE---EEc---chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccC
Confidence 34445466689999999842222222 222 34689999999999999998664 2 4555 33321111
Q ss_pred CCCCCcccccccee-ecCCCCCceec-cCCCCCCCCCceeEEEEecCCCeEEEecCCeeEEeeccCC
Q 002494 807 NPSGKATANVAPQL-WQPPSGTLMTN-DINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTF 871 (915)
Q Consensus 807 s~dg~~~~~~~i~l-~~~~~~~~~~~-~~~~~~h~~~~I~~l~~S~dg~~L~s~sd~~v~vw~l~t~ 871 (915)
+|-.-.++...+.- ..-..+..+.. .++- +..+.+++..|-.--|+.|+++++.+|.+...
T Consensus 103 ~~v~vRiaG~~v~~~~~~~~~~qleiiElPl----~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 103 SPVRVRIAGHRVTPSFNESSKDQLEIIELPL----SEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred CcEEEEEcccccccCCCCccccceEEEEecC----CCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 11110111000000 00001111111 1332 66788999998888888889999999988754
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=81.93 E-value=1.3e+02 Score=36.45 Aligned_cols=189 Identities=10% Similarity=0.081 Sum_probs=103.8
Q ss_pred EEEEEeCCCcEEEEEcCC-CeeEE-------EecCCCCCEEEEEeecCCCccEEEEEeCC---CeEEEEecCC--C--C-
Q 002494 469 CIVTCGDDKMIKVWDVVA-GRKQY-------TFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDY--L--G- 532 (915)
Q Consensus 469 ~l~s~~~d~~i~vwd~~~-~~~~~-------~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~iwd~~~--~--~- 532 (915)
-++.....|.+++|=... ++... .+......++..++.+..+|+.++.++.+ +.|++|.+.- + .
T Consensus 64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~ 143 (753)
T PF11635_consen 64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ 143 (753)
T ss_pred EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence 466667788999987632 22111 12224456777777755566666555555 7788874311 0 0
Q ss_pred -------ceeEec--------C-------------CCCcEEEEEECC------CCC-EEEEEeecCCCCceEEEEECCCC
Q 002494 533 -------SRVDYD--------A-------------PGNWCTMMAYSA------DGT-RLFSCGTSKEGESHLVEWNESEG 577 (915)
Q Consensus 533 -------~~~~~~--------~-------------~~~~i~~~~~sp------~g~-~l~~~~~~~~~~~~i~~wd~~~~ 577 (915)
....+. . .-..++.+.|-+ ... .+++..........|..|.++..
T Consensus 144 ~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~ 223 (753)
T PF11635_consen 144 QIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREE 223 (753)
T ss_pred cCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEcc
Confidence 001000 0 112455665544 112 33333322122567899987643
Q ss_pred e-eEEEe--------------------c----CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE----cC
Q 002494 578 A-IKRTY--------------------S----GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV----DA 628 (915)
Q Consensus 578 ~-~~~~~--------------------~----~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~ 628 (915)
. .+... . -.....|.++....-+.+++..-.||+|.++|..+.+.+... ..
T Consensus 224 ~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~ 303 (753)
T PF11635_consen 224 QQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEP 303 (753)
T ss_pred CcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCC
Confidence 1 11100 0 011124566666666778888999999999999876555443 10
Q ss_pred C-------------CCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 002494 629 D-------------GGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (915)
Q Consensus 629 ~-------------~~~~~v~~v~~s~~~~~l~s~~~dg~i~ 657 (915)
. .....+-.++|||.+..++.-..+|.+.
T Consensus 304 ~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 304 PNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred ccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 0 0011233578999999999999998866
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.89 E-value=0.32 Score=51.87 Aligned_cols=142 Identities=15% Similarity=0.237 Sum_probs=98.6
Q ss_pred ceeecCCCCCceeeecCC------CcccEEEEecCCCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCceecccceeee
Q 002494 317 EVSFAGVAHTPNVYSQDD------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVW 390 (915)
Q Consensus 317 ~~~~s~~g~~~~~~~~d~------~~~~~~~~l~h~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~~~~~~~~~~~ 390 (915)
...|-+.++.+++...+. ..++.+-.+..++....++|..+|..+++.+-..+.+.+||+.+.....-
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL------ 112 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL------ 112 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH------
Confidence 345666666666655443 24555555667778888999999987667777889999999986432110
Q ss_pred ecccCcccccccccCCCccCeEEEEEcCCCCEEEEEECCCeEEEEEecCCCceeeeEEeecccCCeeEEEEecCCCeEEE
Q 002494 391 DISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI 470 (915)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l 470 (915)
..-..|.... +.|++.+..++.+...|.+.|++..+.+.+. ....|...+++++|.+.+. .
T Consensus 113 -----------E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---v 173 (615)
T KOG2247|consen 113 -----------ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---V 173 (615)
T ss_pred -----------hccCcchHHH--HhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---e
Confidence 0012233333 7899999999999999999999987754332 3333889999999999875 6
Q ss_pred EEEeCCCcEEEEE
Q 002494 471 VTCGDDKMIKVWD 483 (915)
Q Consensus 471 ~s~~~d~~i~vwd 483 (915)
+.++.|..+.+-.
T Consensus 174 il~dcd~~L~v~~ 186 (615)
T KOG2247|consen 174 ILCDCDNTLSVTT 186 (615)
T ss_pred eecCcHHHHHHhh
Confidence 7777777665544
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.89 E-value=49 Score=41.12 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=27.8
Q ss_pred CCCEEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCc
Q 002494 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE 380 (915)
Q Consensus 346 ~~~V~~v~fspd~~~ll~~gs~dg~v~iwd~~~~~ 380 (915)
......++|+|... ++|.|+.+|.|.++-...-+
T Consensus 35 ~~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 35 PSTPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCCcceeeccccc-eEEEEEecccEEEecccceE
Confidence 34667889999987 89999999999999766544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 915 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-08 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-08 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 5e-08 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 6e-08 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 7e-08 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 7e-08 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 8e-08 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 9e-08 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 9e-08 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 9e-08 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 1e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-07 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-07 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-05 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-04 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 4e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 915 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-17 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 7e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 8e-08 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 4e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-08 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.001 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 8e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 3e-06 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 6e-06 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 4e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 6e-04 | |
| d1jofa_ | 365 | b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactoniz | 7e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-04 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 80.9 bits (198), Expect = 7e-17
Identities = 44/339 (12%), Positives = 100/339 (29%), Gaps = 32/339 (9%)
Query: 302 DSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQT 360
+++ L +IR + T N+ + RTL + + +M + +
Sbjct: 10 EAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRL 69
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
L+ + G + +W+ + ++ P + + + + + ++
Sbjct: 70 -LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI---------- 470
V S+ + Y +I G + Q
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 471 -----------VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI 519
V+ D K+WDV G + TF GHE+ + ++C + +
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG--NAFATGSD 246
Query: 520 DGKIKAWLYDYLGSRVDYDAPGNWC--TMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577
D + + + Y C T +++S G L + + + W+ +
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDALKA 302
Query: 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616
+G R + + +K W+
Sbjct: 303 DRAGVLAGHDNRVSC-LGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.0 bits (141), Expect = 9e-10
Identities = 36/283 (12%), Positives = 77/283 (27%), Gaps = 43/283 (15%)
Query: 430 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489
I + ++R + H+ + + + + +L +V+ D + +WD K
Sbjct: 32 QITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRL-LVSASQDGKLIIWDSYTTNK 89
Query: 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAY 549
+ + V + + I RV + G+ +
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 550 SADGTRLFSCGT---------------------------------------SKEGESHLV 570
+ S ++
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ EG ++T++G + + + F N F D+ + +D+ L T D
Sbjct: 210 LWDVREGMCRQTFTGH-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
+ + F+K G LL D + +L G
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAG 310
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 79.0 bits (193), Expect = 2e-16
Identities = 41/192 (21%), Positives = 70/192 (36%), Gaps = 8/192 (4%)
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWDISA 394
T V+T + M Q T++ +N + +W V ++E A + +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 395 ASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG 454
+ P + A G G L + ++ + TG L H
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMTLV--GHDN 248
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
V + F K I++C DDK ++VWD R T HE V S+ H ++
Sbjct: 249 WVRGVLFHSGGK--FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA--PYV 304
Query: 515 FSTAIDGKIKAW 526
+ ++D +K W
Sbjct: 305 VTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.5 bits (184), Expect = 3e-15
Identities = 37/229 (16%), Positives = 79/229 (34%), Gaps = 13/229 (5%)
Query: 436 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495
+ P + L H V + F HP + +V+ +D IKVWD G + T +G
Sbjct: 2 EWIPRPPEKYALS--GHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKG 57
Query: 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555
H V + H + S D IK W + + + ++ +G
Sbjct: 58 HTDSVQDISFDHSGKLLASCS--ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 115
Query: 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615
+ S K + V+ +T++G R+ +V+ + + ++ ++ W
Sbjct: 116 IVSASRDKTIKMWEVQTGY----CVKTFTGHREWV-RMVRPNQDGTLIASCSNDQTVRVW 170
Query: 616 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664
+ + + + + E S +++ + + G
Sbjct: 171 VVATKECKAELREHRHVVEC--ISWAPESSYSSISEATGSETKKSGKPG 217
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.2 bits (183), Expect = 5e-15
Identities = 55/328 (16%), Positives = 104/328 (31%), Gaps = 46/328 (14%)
Query: 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406
S V + FHP +++ + I +W+ + + L
Sbjct: 18 SPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKG 57
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
SV + G + + + + + + PN
Sbjct: 58 HTDSVQDISFDHSGKL----LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
IV+ DK IK+W+V G TF GH V V P+ I S + D ++ W
Sbjct: 114 D-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVW 170
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT----------------SKEGESHLV 570
+ + + + ++++ + + S + +
Sbjct: 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G T G GV F + L+ D+ ++ WD N + T++A
Sbjct: 231 MWDVSTGMCLMTLVGHDNWVRGV-LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 289
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKI 658
S L F+K + + D +K+
Sbjct: 290 HFVTS--LDFHKTAPYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.4 bits (124), Expect = 1e-07
Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 12/173 (6%)
Query: 315 SDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLW 374
D A ++ V TK L + +V+ + + + G +
Sbjct: 153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 212
Query: 375 EVGSRERL----AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430
L K K+WD+S M L L V ++ G +
Sbjct: 213 SGKPGPFLLSGSRDKTIKMWDVST-GMCLMT--LVGHDNWVRGVLFHSGGKFILSCADDK 269
Query: 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ ++ Y + ++AH V + F H +VT D+ +KVW+
Sbjct: 270 TLRVWDY-KNKRCMK--TLNAHEHFVTSLDF-HKTAPY-VVTGSVDQTVKVWE 317
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.2 bits (170), Expect = 3e-13
Identities = 41/349 (11%), Positives = 106/349 (30%), Gaps = 28/349 (8%)
Query: 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF 387
N ++ + ++L+ S V + F + L G N ++ V S L +
Sbjct: 44 NPALPREIDVELHKSLDHTSVVCCVKFSNDGE-YLATGCN-KTTQVYRV-SDGSLVARLS 100
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
+ L + + + + + PDG L ++ ++ +
Sbjct: 101 DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL- 159
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507
+ + + +V+ D+ +++WD+ G+ T +
Sbjct: 160 ----QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 215
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-------NWCTMMAYSADGTRLFSCG 560
++I + ++D ++ W + D+ + + ++ DG + S
Sbjct: 216 DG--KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273
Query: 561 TSK-------EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIK 613
+ + ++ + K + V L+ + +
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333
Query: 614 FWDMDNMNMLTTVDADGG----LPASPRLRFNKEGSLLAVTTSDNGIKI 658
FWD + N L + + + E ++ A + D +I
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.4 bits (168), Expect = 5e-13
Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 27/215 (12%)
Query: 325 HTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH 384
V D T TL+ V ++ P + G+ + +W+ + +
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242
Query: 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 444
+ + V V+ DG + V L+
Sbjct: 243 LDSENESGTGHKDS------------VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290
Query: 445 QHLEIDAHV---------GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495
++ V +A ++ I++ D+ + WD +G +G
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDE--YILSGSKDRGVLFWDKKSGNPLLMLQG 348
Query: 496 HEAPVYSVCPHHKESI----QFIFSTAIDGKIKAW 526
H V SV + S+ + + D K + W
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 17/143 (11%)
Query: 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406
+V S+ F Q+ ++ G+ + LW + + + +
Sbjct: 255 DSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD---- 309
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA---- 462
V + + V + +G L+ H V +A A
Sbjct: 310 ---FVLSVATTQNDEYILSGSKDRGVLFWDKK-SGNPLLMLQ--GHRNSVISVAVANGSS 363
Query: 463 -HPNKQLCIVTCGDDKMIKVWDV 484
P + T D ++W
Sbjct: 364 LGPEYNV-FATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 38/356 (10%), Positives = 83/356 (23%), Gaps = 46/356 (12%)
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
++ +D Q L L+ + D+ L +L
Sbjct: 13 SKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALP--------REIDVE-----LHKSL 59
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIV--HLYTYNPTGELRQH------------LEI 449
+ + V + DG L +K + + L
Sbjct: 60 DHTSV--VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 117
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509
+ + + F P+ + D + ++ +
Sbjct: 118 PSSDLYIRSVCF-SPDGKFLATGAEDRLIRIWDIE---NRKIVMILQGHEQDIYSLDYFP 173
Query: 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569
S + S + D ++ W + T+ DG + + +
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233
Query: 570 VEWNESEGAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627
E + V V F ++ + +K W++ N N +
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293
Query: 628 ADGGLPASP----------RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
+ + + + D G+ G L ML+G
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQG 348
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.1 bits (154), Expect = 2e-11
Identities = 36/219 (16%), Positives = 64/219 (29%), Gaps = 20/219 (9%)
Query: 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499
GEL+ + H V I IV+ DD +KVW V G+ T GH
Sbjct: 3 RGELKSPKVLKGHDDHV--ITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559
V+S D I + D + + T+ +++ +
Sbjct: 60 VWSSQMR-------------DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH 106
Query: 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619
S + + V R ++ +F +K WD +
Sbjct: 107 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET 166
Query: 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
L T+ + +G + + D I++
Sbjct: 167 ETCLHTLQGH----TNRVYSLQFDGIHVVSGSLDTSIRV 201
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 27/157 (17%), Positives = 45/157 (28%), Gaps = 15/157 (9%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+V+ D I+VWDV G +T GH++ + + S D +K W
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN----ILVSGNADSTVKIWDIK 245
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
P + + S +G L W+ G R
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKL--WDLKTGEFIRNLVTLESG 302
Query: 590 SLGV----VQFDTTRNRFLAAGD----EFQIKFWDMD 618
G ++ T+ E ++ D D
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 6e-05
Identities = 22/171 (12%), Positives = 54/171 (31%), Gaps = 17/171 (9%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
+ DG+ + + ++ + H + + N
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL---TGHQSLTSGMEL-KDN---I 229
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW--- 526
+V+ D +K+WD+ G+ T +G +V F+ +++ DG +K W
Sbjct: 230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLK 288
Query: 527 ----LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573
+ + + ++ G + S + E+ L+ +
Sbjct: 289 TGEFIRNLV--TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.1 bits (154), Expect = 3e-11
Identities = 46/278 (16%), Positives = 83/278 (29%), Gaps = 23/278 (8%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
++ W D + + + H VH+Y + + Q E+ H G V + +A + ++
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDSNRI- 66
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
VTCG D+ VW + + T + C + + + I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 530 YLGSRV--------------DYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNE 574
D N + A S D R+FS + E
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 575 SEGAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632
S+ V V F +R + + D D + T+ ++
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL- 244
Query: 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670
+ F E SL+A D + L
Sbjct: 245 -PLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSF 280
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.1 bits (89), Expect = 0.002
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLC--IVTCGDDKMIKVWDV 484
H V+ I+ K C T G D + +WDV
Sbjct: 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (142), Expect = 6e-10
Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKES 510
H ++ I + + I+ G + ++++ +G+ ++SV K
Sbjct: 280 HHTNLSAITTFYVSDN--ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335
Query: 511 IQFIFSTAIDGKIKAWLYDY 530
+ + DG+ + D+
Sbjct: 336 -TLVAAVEKDGQSFLEILDF 354
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 8e-08
Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 8/147 (5%)
Query: 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
Q + H+ V N ++T DDKMI+V+D + + GH+ V+++
Sbjct: 4 QRTTLRGHMTSVITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60
Query: 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564
H + S + D ++ W ++ + + + S++
Sbjct: 61 YAHG---GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117
Query: 565 GESHLVEWNESEGAIKRTYSGFRKRSL 591
H+ W + + + L
Sbjct: 118 NTLHV--WKLPKESSVPDHGEEHDYPL 142
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 3e-04
Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 7/138 (5%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
SV C+ + + ++ +Y + L H GGV + +AH
Sbjct: 14 SVITCLQ-FEDNYVITGADDKMIRVYDSI-NKKFLLQLS--GHDGGVWALKYAHGG---I 66
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+V+ D+ ++VWD+ G + FEGH + V + ++I++I + + D + W
Sbjct: 67 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126
Query: 530 YLGSRVDYDAPGNWCTMM 547
S D+ ++ +
Sbjct: 127 KESSVPDHGEEHDYPLVF 144
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (135), Expect = 3e-09
Identities = 30/216 (13%), Positives = 57/216 (26%), Gaps = 16/216 (7%)
Query: 444 RQHLE-IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502
R L+ I + + Q IV+ D IK+WD + GH V
Sbjct: 2 RHSLQRIHCRSETSKGVYCLQYDDQK-IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562
+ + I + + +A + ++ S
Sbjct: 61 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV- 119
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
W+ + V D ++A + IK W+
Sbjct: 120 ---------WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF 170
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
+ T++ L+ +SDN I++
Sbjct: 171 VRTLNGHK----RGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (122), Expect = 1e-07
Identities = 27/151 (17%), Positives = 43/151 (28%), Gaps = 25/151 (16%)
Query: 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 444
+ KVW+ S + ++ S + + L+ LR
Sbjct: 158 RTIKVWNTSTCEF-----VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR 212
Query: 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY---------TFEG 495
G ++ IV+ D IKVWD+VA T
Sbjct: 213 VL-------EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 265
Query: 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
H V+ + I S++ D I W
Sbjct: 266 HSGRVFRLQFDEF----QIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (89), Expect = 0.002
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 15/102 (14%)
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
++WDI + L D + + ++ + R
Sbjct: 201 RLWDIECGAC-----LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255
Query: 448 E------IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ H G V + F + IV+ D I +WD
Sbjct: 256 GTLCLRTLVEHSGRVFRLQF-DEFQ---IVSSSHDDTILIWD 293
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.1 bits (133), Expect = 6e-09
Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 8/112 (7%)
Query: 441 GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAP 499
G + Q H + ++ + + + + + I WD+ G F + H
Sbjct: 2 GSIDQVRY--GHNKAITALSS-SADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATM 57
Query: 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA 551
+ + +F+ + D +K G + A
Sbjct: 58 ITGIKTTS---KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.1 bits (99), Expect = 9e-05
Identities = 26/323 (8%), Positives = 73/323 (22%), Gaps = 33/323 (10%)
Query: 338 TVVRTLNQG--SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 395
++ + G + ++ +T L G I+ W++ +
Sbjct: 3 SIDQVR-YGHNKAITALSSSADGKT-LFSADAEGHINSWDISTGISNR------------ 48
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG 455
+ A + G + V++ H+ G + A+
Sbjct: 49 ------VFPDVHATMITGIKTTSKGDLFTVSWDDHLKV---VPAGGSGVDSSKAVANKLS 99
Query: 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 515
+ A V + + + + ++ +
Sbjct: 100 SQPLGLAVSADGDIAVAACYKHIAIYSHG---KLTEVPISYNSSCVALSNDKQFVAVGGQ 156
Query: 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575
+ + + + + A F T + + +
Sbjct: 157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN-----GAFLVATDQSRKVIPYSVANN 211
Query: 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635
F + V + R + + W+M+ + + +S
Sbjct: 212 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSS 271
Query: 636 PRLRFNKEGSLLAVTTSDNGIKI 658
+ + D+ IK
Sbjct: 272 VNSVIWLNETTIVSAGQDSNIKF 294
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.5 bits (95), Expect = 3e-04
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 471
W PD + L + V ++ N + AH + + V
Sbjct: 228 ACVSWSPDNVRLATGSLDNSVIVWNMN-KPSDHPIIIKGAHAMSSVNSVIWLNETTI--V 284
Query: 472 TCGDDKMIKVWDV 484
+ G D IK W+V
Sbjct: 285 SAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 5e-04
Identities = 17/117 (14%), Positives = 25/117 (21%), Gaps = 5/117 (4%)
Query: 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 471
V + VA + + H P+
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA- 240
Query: 472 TCGDDKMIKVWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
T D + VW++ H + E I S D IK W
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE--TTIVSAGQDSNIKFW 295
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 34/244 (13%), Positives = 70/244 (28%), Gaps = 9/244 (3%)
Query: 445 QHLEI-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE---GHEAPV 500
Q ++I A ++DI P+K L ++ D + V+ K ++ P+
Sbjct: 2 QIVQIEQAPKDYISDIKI-IPSKSL-LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59
Query: 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560
+Q T +K L + + N +L +
Sbjct: 60 LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119
Query: 561 TSKEGESHLVEWNESEGAIKRTYSG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619
E + + K + DT +R + + Q++++ +
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179
Query: 620 MNMLTTVDADGGLPASPRLR--FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMD 677
+ GL R KE A ++ D + + D + A
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239
Query: 678 KNRC 681
+R
Sbjct: 240 CHRL 243
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 1e-08
Identities = 26/325 (8%), Positives = 75/325 (23%), Gaps = 35/325 (10%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
+ + P + +L + S + V+ + +
Sbjct: 14 ISDIKIIPSKSLLL-------------ITSWDGSL----TVYKFDIQAKNVDLLQSLRYK 56
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+ C + + + + L Q L + G+ I +K +
Sbjct: 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLI 116
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527
G ++I + G + V + + + + +++ +
Sbjct: 117 AASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR 176
Query: 528 YDYLGSRVDYDAPGNWCTMM----AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583
+ + + + + +
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 584 SGFRKRSLGV----------VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633
+ R ++F AG + I W++ +
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA---KFN 293
Query: 634 ASPRLRFNKEGSLLAVTTSDNGIKI 658
++ ++L + TSD+ K
Sbjct: 294 EDSVVKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 7e-06
Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 19/129 (14%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL------------RQHLEIDAHVGGVND 458
+ + + + V + ++ G+ R +L+ VN
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256
Query: 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFST 517
I F+ +K L G D +I W++ +K F +E V + +
Sbjct: 257 IEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310
Query: 518 AIDGKIKAW 526
D K
Sbjct: 311 TSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 9e-05
Identities = 23/265 (8%), Positives = 59/265 (22%), Gaps = 16/265 (6%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
++ P +L + + +Y ++ + L+ + + F
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
V +++KV + + Q + + S ++
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT---YSGF 586
G + N + S S + + SG
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR--------- 637
+ + V + + + + ++ D+
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 638 ----LRFNKEGSLLAVTTSDNGIKI 658
+ F+ L SD I
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISC 277
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (129), Expect = 3e-08
Identities = 35/321 (10%), Positives = 81/321 (25%), Gaps = 35/321 (10%)
Query: 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM-- 397
+ TLN G V ++ + + G + + KVWDIS
Sbjct: 45 INTLNHGEVVCAVTISNPTRHVY-------------TGGKGCV-----KVWDISHPGNKS 86
Query: 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVN 457
P+ + + C PDG L V + ++ + +
Sbjct: 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA 146
Query: 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517
+ G+ + + + + + C +++
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLH-----NQTLVRQFQGHTDGASCIDISNDGTKLWTG 201
Query: 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577
+D +++W +D + Y G L S E V +
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260
Query: 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637
++F F++ G + + W + + +
Sbjct: 261 LHLHESCVLS------LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS--- 311
Query: 638 LRFNKEGSLLAVTTSDNGIKI 658
+ + + + D +
Sbjct: 312 CDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 7e-08
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 9/117 (7%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
+ + P G L V V + N ++ H V + FA+ K
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNK----PDKYQLHLHESCVLSLKFAYCGKWF- 280
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
V+ G D ++ W G + + V S + ++I + + D K +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD--KYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 5e-06
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC 473
+ G ++++ + P G + V + + IVT
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRT-PYGASIFQSK---ESSSVLSCDI-SVDDKY-IVTG 324
Query: 474 GDDKMIKVWDVV 485
DK V++V+
Sbjct: 325 SGDKKATVYEVI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 9e-06
Identities = 21/137 (15%), Positives = 36/137 (26%), Gaps = 11/137 (8%)
Query: 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477
DG M V F + L H V + ++P + + T G
Sbjct: 19 ADGQMQPVPFPPDALIGPGIPRHARQINTLN---HGEVVCAVTISNPTRHV--YTGGKGC 73
Query: 478 MIKVWDVVAGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG 532
+KVWD+ Q + + S + A I
Sbjct: 74 -VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132
Query: 533 SRVDYDAPGNWCTMMAY 549
+ + + C +A
Sbjct: 133 IKAELTSSAPACYALAI 149
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 53.4 bits (127), Expect = 8e-08
Identities = 43/331 (12%), Positives = 84/331 (25%), Gaps = 44/331 (13%)
Query: 281 VGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVV 340
V +K + ++ + + AG P D T
Sbjct: 98 VAEIKIGIEARSVESSKFKGYEDRYT-------------IAGAYWPPQFAIMDGETLEPK 144
Query: 341 RTLNQ-GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399
+ ++ G V + +HP+ + ++ ++ + V KV ++ +
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG-------KVLLVNYKDIDN 197
Query: 400 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDI 459
AA + W A + + L +++
Sbjct: 198 LTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 257
Query: 460 AFAHPNKQLCIVTCGDDK--------MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES- 510
F HP T K A +K +G + H K S
Sbjct: 258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH 317
Query: 511 IQFIFSTAIDGKIKAWLYDY-------------LGSRVDYDAPGNWCTMMAYSADGTRL- 556
+ + D +I + + + D Y+ G +
Sbjct: 318 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 377
Query: 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587
FS K S LV ++ +K R
Sbjct: 378 FSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 408
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.5 bits (96), Expect = 4e-04
Identities = 9/108 (8%), Positives = 23/108 (21%), Gaps = 8/108 (7%)
Query: 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517
L VT D I + D + + + A + +++
Sbjct: 23 KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASG--RYLLVI 79
Query: 518 AIDGKIKAWLYDYLGSRVDYD-----APGNWCTMMAYSADGTRLFSCG 560
D +I + + + + +
Sbjct: 80 GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA 127
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 9e-08
Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 4/171 (2%)
Query: 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDIS 393
+L TV + S+D + ++ G N G + + E+ + L + + I+
Sbjct: 172 ELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMIN 229
Query: 394 AASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV 453
++ ++ G + PT + L AH
Sbjct: 230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 289
Query: 454 GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
V ++F + + + G D ++ WDV + T H +
Sbjct: 290 SWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE 338
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 5e-06
Identities = 22/302 (7%), Positives = 71/302 (23%), Gaps = 43/302 (14%)
Query: 434 LYTYNPTGELRQHLEIDAHVGGVNDIAF-----AHPNKQLCIVTCGDDKMIKVWDVVAGR 488
+ + H G++ + + + T + + +
Sbjct: 41 NKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRED 100
Query: 489 KQYTFEGHEAPVYSVCPHHKE-------------SIQFIFSTAIDGKIKAW--------- 526
+ + + + +T + G W
Sbjct: 101 ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160
Query: 527 ---------LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK----EGESHLVEWN 573
+ G+ P + T + S G + + + S L
Sbjct: 161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY 219
Query: 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633
E + RS+ + + I ++ + + ++
Sbjct: 220 NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS 279
Query: 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG--VRLLRMLEGRAMDKNRCPSEPISSKPL 691
+ F +++++ +D+G + + +R + + + I +
Sbjct: 280 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED 339
Query: 692 TI 693
+
Sbjct: 340 IL 341
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 31/333 (9%), Positives = 77/333 (23%), Gaps = 27/333 (8%)
Query: 320 FAGVAHTPNVYSQDDLTKTVVRTL---NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV 376
A + D V + + + G M P + + ++
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 377 GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN-RCVWGPDGLMLGVAFSKHIVHLY 435
+ E L + S+ AA+S + + + + + +
Sbjct: 64 VTGETLGRIDLSTPEERVKSL-------FGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116
Query: 436 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL-------CIVTCGDDKMIKVWDVVAGR 488
E + + +A+A +L ++ +++ + +
Sbjct: 117 VALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE 176
Query: 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548
+ + V++ ++ D G D M
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT-MDLETGEMAMRE 235
Query: 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV------VQFDTTRNR 602
FS + + + + + V T +
Sbjct: 236 VRIMDVFYFSTAVNPAK--TRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGST 293
Query: 603 FLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635
G + +D + + VD G S
Sbjct: 294 VWLGGALGDLAAYDAETLEKKGQVDLPGNASMS 326
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 2e-06
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC 473
+ ++ + +Y+ ++ + L AH GVN++ + P+ +V+
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST---LVSS 275
Query: 474 GDDKMIKVWDVV 485
G D IK W+VV
Sbjct: 276 GADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.3 bits (110), Expect = 4e-06
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 469 CIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+ T D I ++ V K H+ V ++ + + S+ D IK W
Sbjct: 229 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST---LVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.6 bits (103), Expect = 3e-05
Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 11/82 (13%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G+ + +P +++ D I W + + H + S+
Sbjct: 9 ISGHNKGITALTV-NP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57
Query: 509 ESIQFIFSTAIDGKIKAWLYDY 530
+ I +++
Sbjct: 58 QEYSSISWDDTLKVNGITKHEF 79
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 48.3 bits (113), Expect = 2e-06
Identities = 23/331 (6%), Positives = 78/331 (23%), Gaps = 40/331 (12%)
Query: 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGD-ISLWEVGSRERLAHKPFKVWDI 392
D++ T V + + + + + + GT GD + +++ + + +
Sbjct: 30 DVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF 89
Query: 393 SAAS-----------MPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441
+ + ++ + ++ S + + P
Sbjct: 90 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK 149
Query: 442 ELRQHLEIDAHVGGVN---------------DIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486
+ + + D A A + + D V
Sbjct: 150 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209
Query: 487 GR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYD 538
K + + ++ ++ +
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269
Query: 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598
P ++ + + L++++ + + ++
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTD-----LRLSA 324
Query: 599 TRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629
R + D+ +I + ++ TV+ D
Sbjct: 325 DRKTVMVRKDDGKIYTFPLEKPEDERTVETD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.9 bits (104), Expect = 3e-05
Identities = 20/165 (12%), Positives = 43/165 (26%), Gaps = 12/165 (7%)
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 395
+ + S + P + V E G +
Sbjct: 207 RVVLNFSFEVVSKPFVIPLIPGSPNPTKL---VPRSMTSEAGEYDLNDMYKRSSPINVDP 263
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG 455
L + + + V G A K ++ Y T ++ +
Sbjct: 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK-TRKVTEV------KNN 316
Query: 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500
+ D+ + K + + DD I + + + T E + P+
Sbjct: 317 LTDLRLSADRKTV--MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 40.2 bits (92), Expect = 0.001
Identities = 33/349 (9%), Positives = 78/349 (22%), Gaps = 34/349 (9%)
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492
+ + +G + + + K I + + ++D K
Sbjct: 25 QAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYD-YRTGKAEK 80
Query: 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----WCTMMA 548
FE + V+++ + + +
Sbjct: 81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR 140
Query: 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608
+ A G L T + ++ I + FD
Sbjct: 141 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN--SHDYAPAFDADSKNLYYLSY 198
Query: 609 EFQIKFWDMDNMNMLTTV-----------DADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657
D +N V + PR ++ G
Sbjct: 199 RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSP 258
Query: 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGP 717
I + R++ LE + + ++ G +
Sbjct: 259 INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK-TRKVTEVKNNL 317
Query: 718 PAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766
+ +S+ D ++ V +D KI ++ + P + +
Sbjct: 318 TDLRLSA----DRKTVM-----VRKDDGKIYTF---PLEKPEDERTVET 354
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.0 bits (112), Expect = 3e-06
Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 8/118 (6%)
Query: 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 471
G G + + + TG + G P+ I
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IA 254
Query: 472 TCGDDKMIKVWDVVAGRKQYTFEGH---EAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+ DK IK+W+V + + T E + Q + S + +G I
Sbjct: 255 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.9 bits (104), Expect = 3e-05
Identities = 31/297 (10%), Positives = 74/297 (24%), Gaps = 20/297 (6%)
Query: 323 VAHTPNVYSQDDLTKTVVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRER 381
+ +VY+ + T + S+ P G G++ +W+
Sbjct: 34 YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTH 92
Query: 382 LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441
+ V+ + + F + +
Sbjct: 93 ILKTTIPVFSGPVKDISWDS-----------ESKRIAAVGEGRERFGHVFLFDTGTSNGN 141
Query: 442 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501
Q +++ + V + K ++ P
Sbjct: 142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 201
Query: 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561
S+ + +DG D + A + +S DGT++ S
Sbjct: 202 SLFASTGGDGTIVLYNGVDGTKTGVFEDD---SLKNVAHSGSVFGLTWSPDGTKIASASA 258
Query: 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618
K + WN + +++T + + T+ ++ I F + +
Sbjct: 259 DK----TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 3e-06
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 3/119 (2%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
S R V V + ++ D I
Sbjct: 206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 265
Query: 470 IVTCGDDKMIKVWDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
T G D I+VWDV + +++T + + V + I S ++DG + +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 7e-06
Identities = 23/253 (9%), Positives = 59/253 (23%), Gaps = 10/253 (3%)
Query: 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG-VNDIAFAHPNKQLCIVTCG 474
+ P + K + ++ ++ H V + F+ + +
Sbjct: 25 YDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD 84
Query: 475 DDKMIKVWDVVAGRKQYTF--------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+ + VW ++ + + P+ + + + D
Sbjct: 85 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFI 144
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586
+D S + A RT+
Sbjct: 145 SWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ 204
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR-FNKEGS 645
V + + G + +I +D + L ++ D +
Sbjct: 205 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ 264
Query: 646 LLAVTTSDNGIKI 658
A +D I++
Sbjct: 265 KFATVGADATIRV 277
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.4 bits (100), Expect = 8e-05
Identities = 8/101 (7%), Positives = 26/101 (25%), Gaps = 2/101 (1%)
Query: 384 HKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL 443
+ +D + + + D + + ++ T +
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT-TSKC 285
Query: 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484
Q +D G + I++ D + +++
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYEL 325
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 47.6 bits (111), Expect = 3e-06
Identities = 36/300 (12%), Positives = 82/300 (27%), Gaps = 33/300 (11%)
Query: 319 SFAGVAHTPN--VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV 376
+FA +A++ + + D + V T+ GSN M P + + + D+S+ +
Sbjct: 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61
Query: 377 GSRERLAHKPF----------------------KVWDISAASMPLQNALLNDAAISVNRC 414
+ +A P + A S
Sbjct: 62 ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGL 121
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
PDG L V + T + + + G+ +
Sbjct: 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMS 181
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
+ V + V EA + + + + ++ + + +
Sbjct: 182 ISVIDTVTNSV-----IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGV 593
G +A + DG +++ + + + + + I T + G + G
Sbjct: 237 TARIPVGPDPAGIAVTPDGKKVY---VALSFCNTVSVIDTATNTITATMAVGKNPYASGQ 293
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 47.1 bits (110), Expect = 6e-06
Identities = 17/116 (14%), Positives = 33/116 (28%), Gaps = 11/116 (9%)
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491
+H++ N G L ++ G V + P+K+ V + + + +
Sbjct: 16 IHVWNLNHEGALTL-TQVVDVPGQVQPMVV-SPDKRYLYVGVRPEFRVLAYRIAPDDGAL 73
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547
TF A S+ ST G+ G+ +
Sbjct: 74 TFAAESALPGSLTH---------ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 120
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 41.4 bits (95), Expect = 4e-04
Identities = 30/299 (10%), Positives = 70/299 (23%), Gaps = 46/299 (15%)
Query: 329 VYSQDDLTK-TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF 387
V++ + T+ + ++ V M P ++ + + + + + +
Sbjct: 18 VWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA 77
Query: 388 KVW--------DISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVH------ 433
+ + N +SV R G ++ V H
Sbjct: 78 ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP 137
Query: 434 ----------------LYTYNPTGE--LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475
L+T + G + E+ G HPN+Q
Sbjct: 138 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 197
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY----- 530
+ + VW++ + + + +
Sbjct: 198 NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVF 257
Query: 531 -------LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582
+ S+ + G L + G K + E +G +
Sbjct: 258 SVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG-QKSHHISVYEIVGEQGLLHEK 315
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.7 bits (109), Expect = 7e-06
Identities = 25/281 (8%), Positives = 60/281 (21%), Gaps = 23/281 (8%)
Query: 216 PTNNPLVGPIPKAGQFPPIGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFV 275
P I + P+ ++P + + S +P++ + +
Sbjct: 85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM 144
Query: 276 QPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDL 335
+ T D G +
Sbjct: 145 LDVPDCYHIFPTAPDTFFMH----CRDGSLAKVAF--------GTEGTPEITHTEVFHPE 192
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 395
+ ++ + + I + + GD + + +
Sbjct: 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA-------VEALTEAERADG 245
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG 455
P + + + V + TGE E
Sbjct: 246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA-KTGERLAKFE---MGHE 301
Query: 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496
++ I + K L DK + + D +G + +
Sbjct: 302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 41/318 (12%), Positives = 78/318 (24%), Gaps = 44/318 (13%)
Query: 301 ADSDHLMKRIRTGQSDEVSFA------GVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
++ ++ I G A A T V + + + + D
Sbjct: 35 GEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADI 94
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLA----HKPFKVWDISAASMPLQNALLNDAAI- 409
LVGT SL G V D+ + + + I
Sbjct: 95 ELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF 154
Query: 410 ---SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
+ DG + VAF T+ +N A++
Sbjct: 155 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL-------INHPAYSQKAG 207
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFS-------- 516
+L T I D+ +G ++ E + Q +
Sbjct: 208 RLVWPT--YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265
Query: 517 --------TAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567
+ D G R+ G+ + S D L ++ +
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTL 325
Query: 568 HLVEWNESEGAIKRTYSG 585
++ + G R+ +
Sbjct: 326 YI--HDAESGEELRSVNQ 341
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 43.6 bits (101), Expect = 8e-05
Identities = 23/237 (9%), Positives = 52/237 (21%), Gaps = 28/237 (11%)
Query: 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405
G ++ S P + + N +V+ +
Sbjct: 88 GRSMYSFAISPDGKE-VYATVNPTQRLNDHYVV----KPPRLEVFSTADGLEAKPVRTFP 142
Query: 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI---------------- 449
V DG + + + + T T L
Sbjct: 143 MPR-QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201
Query: 450 -DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEAPVYSVCPHH 507
H + + + T D+ G+ F ++
Sbjct: 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 261
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564
K+ Q ++ + + + +A+ G +L+ GT +
Sbjct: 262 KDPNQIYGV---LNRLAKYDLKQ-RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 314
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 41.3 bits (95), Expect = 4e-04
Identities = 19/217 (8%), Positives = 51/217 (23%), Gaps = 2/217 (0%)
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
+ +P ++ + + +
Sbjct: 127 FSTADGLEAKPVRTFPM-PRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWN 185
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
+ S S A Q + L + TG +
Sbjct: 186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ 245
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
+D +S + + D + +++ N + F +
Sbjct: 246 EFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDK 305
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM 397
L +G D++++ + E++ + D+S +
Sbjct: 306 -LYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP 341
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.5 bits (93), Expect = 7e-04
Identities = 17/172 (9%), Positives = 40/172 (23%), Gaps = 14/172 (8%)
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER-------LAHKPFK 388
T L + P + + S+ +R + A +
Sbjct: 172 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 231
Query: 389 VWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLE 448
+ + D + P + + + Y +L +
Sbjct: 232 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ-IYGVLNRLAKYDLK-QRKLIKAAN 289
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500
+D +AF +L G + V++ K + +
Sbjct: 290 LD---HTYYCVAFDKKGDKL--YLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (95), Expect = 6e-04
Identities = 22/195 (11%), Positives = 46/195 (23%), Gaps = 15/195 (7%)
Query: 442 ELRQHLEIDAHVGGV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500
E+R+ ++ + L VT D I + D + + A
Sbjct: 6 EMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV- 64
Query: 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAYSADGTR 555
+ +++F DGK+ + T +
Sbjct: 65 HISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122
Query: 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA---GDEFQI 612
+ V + K+ S R + A EF +
Sbjct: 123 AIAGA---YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179
Query: 613 KFWDMDNMNMLTTVD 627
+ + ++ D
Sbjct: 180 NVKETGKILLVDYTD 194
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Length = 365 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Score = 40.6 bits (94), Expect = 7e-04
Identities = 32/316 (10%), Positives = 79/316 (25%), Gaps = 38/316 (12%)
Query: 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWD 391
+ G + + D + I L+ +++ + + F V +
Sbjct: 69 SPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSE 128
Query: 392 ISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV-AFSKHIVHLYTYNPTGELRQHLEID 450
+QN + ++ V+ P L + + + + +GE+ +D
Sbjct: 129 TGKLEKNVQNYEYQENT-GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD 187
Query: 451 AHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509
A G + A HP I + + + H P+
Sbjct: 188 APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL--------- 238
Query: 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT---SKEGE 566
+ + A + G +F+ +
Sbjct: 239 ----------------IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQG 282
Query: 567 SHLVEWNESEGAIKRTYSGFRKRSLGV----VQFDTTRNRFLAAGDEF--QIKFWDMDNM 620
G+I++ + G V + ++A D+ ++ + +
Sbjct: 283 YIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342
Query: 621 NMLTTVDADGGLPASP 636
+ P
Sbjct: 343 FLHRVARVRIPEPGFG 358
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.3 bits (93), Expect = 7e-04
Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498
G+ + + + I A +++ ++D + + Q + E +
Sbjct: 302 SVGQTSGPIS---NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358
Query: 499 P 499
P
Sbjct: 359 P 359
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 915 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.96 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.95 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.93 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.93 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.92 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.92 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.91 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.9 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.88 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.88 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.87 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.86 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.8 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.79 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.75 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.73 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.71 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.62 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.53 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.5 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.47 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.47 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.47 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.41 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.35 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.25 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.23 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.19 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.16 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.16 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.09 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.04 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.01 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.94 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.9 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.84 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.45 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.39 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.36 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.68 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 97.67 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.66 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.31 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.23 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.22 | |
| d2j4ba1 | 131 | TAF5 subunit of TFIID {Encephalitozoon cuniculi [T | 97.19 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.18 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.15 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.14 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.12 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.11 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.08 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.88 | |
| d2j49a1 | 134 | TAF5 subunit of TFIID {Saccharomyces cerevisiae [T | 96.68 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.59 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.49 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.48 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.48 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.23 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.97 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.44 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.77 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 94.05 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.41 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-42 Score=288.73 Aligned_cols=294 Identities=13% Similarity=0.194 Sum_probs=251.4
Q ss_pred CCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 42789850799779999917999399999477909999869984002466056532667632101014777548499999
Q 002494 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (915)
Q Consensus 337 ~~~~~~l~h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~ 416 (915)
.+.+.++.|...|+|++|+|+|+ +|++|+ ||.|++||+.++...... ......+|.+.|.+++|
T Consensus 42 ~~~~~~~~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~~--------------~~~~~~~h~~~I~~v~~ 105 (337)
T d1gxra_ 42 ARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSPV--------------SQLDCLNRDNYIRSCKL 105 (337)
T ss_dssp EEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSCS--------------EEEECSCTTSBEEEEEE
T ss_pred CEEEEECCCCCCEEEEEECCCCC-EEEEEE-CCEEEEEECCCCCCCCEE--------------EEEEECCCCCCEEEEEE
T ss_conf 54999879999289999989999-999997-998899773677633116--------------87640488996899998
Q ss_pred CCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCC
Q ss_conf 58999899998898599999048983233477533457766899916999079999918991999996799067896188
Q 002494 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (915)
Q Consensus 417 spd~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 496 (915)
+|++++|++++.|+.|++||+...... ....+..|...+.++.|+|++. ++++++.|+.+++|++.+++.......|
T Consensus 106 s~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~ 182 (337)
T d1gxra_ 106 LPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH 182 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 679988988612332111111111111-1111111111111111111111--1111111111111111111111111111
Q ss_pred CCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCC
Q ss_conf 99878997203799419999967994999965899823685089991799999799998999963379983399997899
Q 002494 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (915)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (915)
...+.+++|++++ ..+++++.|+.+++||+++......+. +...+.+++|+|+++.+++++. ++.+++||++.
T Consensus 183 ~~~v~~l~~s~~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~ 255 (337)
T d1gxra_ 183 TDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNK 255 (337)
T ss_dssp SSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTS
T ss_pred CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCEEEEEECCCCCCCCEECC----CCCCCCCCCCC
T ss_conf 1111101234443--211223566553211111100000246-6661579997153030000002----56421111111
Q ss_pred CEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCE
Q ss_conf 92689952777874479998599999999968991999969999147997179999983549995999999999589959
Q 002494 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (915)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i 656 (915)
+... ....|.. .+.+++|+|++++|++++.||.|++||..+++.+..+... ..|++++|+|++++|++++.||.|
T Consensus 256 ~~~~-~~~~~~~-~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~~I 330 (337)
T d1gxra_ 256 PDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp SCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTSCE
T ss_pred CCCC-CCCCCCC-CCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCC---CCEEEEEEECCCCEEEEEECCCEE
T ss_conf 1100-0012456-5416999899999999948996999989999799992699---987999992799999999089969
Q ss_pred EEEEC
Q ss_conf 99986
Q 002494 657 KILAN 661 (915)
Q Consensus 657 ~iwd~ 661 (915)
++|++
T Consensus 331 ~vWdl 335 (337)
T d1gxra_ 331 TVYEV 335 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99977
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.9e-40 Score=276.22 Aligned_cols=308 Identities=14% Similarity=0.242 Sum_probs=201.4
Q ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 27898507997799999179993999994779099998699840024660565326676321010147775484999995
Q 002494 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (915)
Q Consensus 338 ~~~~~l~h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s 417 (915)
.+...+.|.+.|+|++|||||+ +|++|+ |+.|++|++.+++.+........... ............|...|.+++|+
T Consensus 54 ~l~~~~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~V~~l~~s 130 (388)
T d1erja_ 54 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAANK-DPENLNTSSSPSSDLYIRSVCFS 130 (388)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred EEEEECCCCCCEEEEEECCCCC-EEEEEE-CCEEEEEEECCCCEEEEECCCCCCCC-CCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 1076079999689999999999-999994-99489998136405766316654432-44321110146778988999988
Q ss_pred CCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCC
Q ss_conf 89998999988985999990489832334775334577668999169990799999189919999967990678961889
Q 002494 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (915)
Q Consensus 418 pd~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 497 (915)
|++++|++|+.||.|++|+...++... ...+|...|.++.|++++. .+++++.++.+++||..+.........+.
T Consensus 131 ~~~~~l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 205 (388)
T d1erja_ 131 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIED 205 (388)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCC--CCCCCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 999801213444111121111111111---1111111111101111111--11122210156541011111100001245
Q ss_pred CCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEE-------CCCCCCEEEEEECCCCCEEEEEEECCCCCCEEE
Q ss_conf 9878997203799419999967994999965899823685-------089991799999799998999963379983399
Q 002494 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (915)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~ 570 (915)
...++.+.+. ++.++++++.|+.+++|+..+......+ ..|...|.+++|+|+++++++++. ++.++
T Consensus 206 -~~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~ 279 (388)
T d1erja_ 206 -GVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVK 279 (388)
T ss_dssp -CEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred -CCCCCCCCCC-CCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEC----CCCEE
T ss_conf -4421123688-78758997389819996345573000102443334577898789999799999999978----99289
Q ss_pred EEECCCCEE------------EEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEE
Q ss_conf 997899926------------89952777874479998599999999968991999969999147997179999983549
Q 002494 571 EWNESEGAI------------KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (915)
Q Consensus 571 iwd~~~~~~------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i 638 (915)
+||+..+.. ......|.. .+.+++|+|++++|++++.||.|++||+.+++++..+.+|.. .|+++
T Consensus 280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~V~~~ 356 (388)
T d1erja_ 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISV 356 (388)
T ss_dssp EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCEEEECCCCCC-EEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC--CEEEE
T ss_conf 875157764321013444200110124553-278999889999999996989799999999969999968899--78999
Q ss_pred EE------CCCCCEEEEEECCCCEEEEECC
Q ss_conf 99------5999999999589959999869
Q 002494 639 RF------NKEGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 639 ~~------s~~~~~l~s~~~dg~i~iwd~~ 662 (915)
++ +|++.+|++|+.||+|++|+++
T Consensus 357 ~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 357 AVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEECCCCCCCCCCEEEEEECCCEEEEEEEE
T ss_conf 984674258999999999189979997621
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=9.3e-40 Score=271.74 Aligned_cols=285 Identities=20% Similarity=0.363 Sum_probs=214.3
Q ss_pred EEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 850-7997799999179993999994779099998699840024660565326676321010147775484999995899
Q 002494 342 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (915)
Q Consensus 342 ~l~-h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~ 420 (915)
+|. |.+.|++++|+|+++ +|++|+.||.|++||+.+++.+.. +.+|...|.+++|+|++
T Consensus 12 ~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~~~ 71 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSG 71 (317)
T ss_dssp EEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTS
T ss_pred EECCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCCCCEEEEEEECCC
T ss_conf 9858888768999938989-999993899299998999979999-------------------95788867777630111
Q ss_pred CEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCE
Q ss_conf 98999988985999990489832334775334577668999169990799999189919999967990678961889987
Q 002494 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (915)
Q Consensus 421 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 500 (915)
.+++++..++.+..|+........ .+.+|...+.++.|++++. .+++++.|+.+++||+.+++....+.+|...+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 146 (317)
T d1vyhc1 72 KLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 146 (317)
T ss_dssp SEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEEECCCCCC--EEEEECCCCCEEEEECCCCEEEEEECCCCCCC
T ss_conf 101111111110111001111111---1000000000000169985--57765267523575114430346871677763
Q ss_pred EEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCC--------------------EEEEEE
Q ss_conf 899720379941999996799499996589982368508999179999979999--------------------899996
Q 002494 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT--------------------RLFSCG 560 (915)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~--------------------~l~~~~ 560 (915)
.++++++++ .++++++.|+.+++|+.........+..+...+.++.++|++. .+++++
T Consensus 147 ~~~~~~~~~--~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (317)
T d1vyhc1 147 RMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 224 (317)
T ss_dssp EEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred EEEECCCCC--CEEEEEECCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECC
T ss_conf 000016679--999999279829997512540347882477873379986325641110345630343025886147516
Q ss_pred ECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEE
Q ss_conf 33799833999978999268995277787447999859999999996899199996999914799717999998354999
Q 002494 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (915)
Q Consensus 561 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~ 640 (915)
.++.|++|+..+++++..+.+|.. .+.+++++|++++|++++.||.|++||+.+++++..+..|.. .|++++|
T Consensus 225 ----~d~~i~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~V~~~~~ 297 (317)
T d1vyhc1 225 ----RDKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDF 297 (317)
T ss_dssp ----TTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEE
T ss_pred ----CCCEEEEEECCCCCEEEEEECCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCC--CEEEEEE
T ss_conf ----997899988899968899968899-879999879999999997989499999999919999928999--8899999
Q ss_pred CCCCCEEEEEECCCCEEEEE
Q ss_conf 59999999995899599998
Q 002494 641 NKEGSLLAVTTSDNGIKILA 660 (915)
Q Consensus 641 s~~~~~l~s~~~dg~i~iwd 660 (915)
+|++++|++++.||.|++||
T Consensus 298 s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 298 HKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CSSSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEECCCEEEEEC
T ss_conf 49999999992899499829
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-39 Score=270.47 Aligned_cols=245 Identities=14% Similarity=0.231 Sum_probs=161.7
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEE--EEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE
Q ss_conf 7754849999958999899998898599999048983233--47753345776689991699907999991899199999
Q 002494 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQ--HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 406 ~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd 483 (915)
.|...|.+++|+|+|++|++|+ ||.|++||+..+..... .....+|.+.|.+++|+|+++ +|++++.|+.|++||
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCC--EEEEEECCCCCCCCC
T ss_conf 9999289999989999999997-9988997736776331168764048899689999867998--898861233211111
Q ss_pred CCCC--EEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 6799--06789618899878997203799419999967994999965899823685089991799999799998999963
Q 002494 484 VVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (915)
Q Consensus 484 ~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~ 561 (915)
+... +....+..|...+..+.|++++ .++++++.|+.+++|++.+.........+...+.+++|++++..+++++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~ 203 (337)
T d1gxra_ 126 LAAPTPRIKAELTSSAPACYALAISPDS--KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1111111111111111111111111111--11111111111111111111111111111111110123444321122356
Q ss_pred CCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEC
Q ss_conf 37998339999789992689952777874479998599999999968991999969999147997179999983549995
Q 002494 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (915)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s 641 (915)
++.+++||+++++.+..+. +.. .+.+++|+|+++++++++.|+.+++|++..++... ...|.. .|++++|+
T Consensus 204 ----d~~v~i~d~~~~~~~~~~~-~~~-~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~--~i~~v~~s 274 (337)
T d1gxra_ 204 ----DNTVRSWDLREGRQLQQHD-FTS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHES--CVLSLKFA 274 (337)
T ss_dssp ----TSEEEEEETTTTEEEEEEE-CSS-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSS--CEEEEEEC
T ss_pred ----CCCCCCCCCCCCEEECCCC-CCC-CEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCC-CCCCCC--CCCEEEEC
T ss_conf ----6553211111100000246-666-15799971530300000025642111111111000-012456--54169998
Q ss_pred CCCCEEEEEECCCCEEEEECCCC
Q ss_conf 99999999958995999986998
Q 002494 642 KEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 642 ~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
|++++|++++.||.|++|+..++
T Consensus 275 ~~g~~l~s~s~Dg~i~iwd~~~~ 297 (337)
T d1gxra_ 275 YCGKWFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTC
T ss_pred CCCCEEEEEECCCEEEEEECCCC
T ss_conf 99999999948996999989999
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.1e-39 Score=271.24 Aligned_cols=286 Identities=14% Similarity=0.205 Sum_probs=238.0
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 99779999917999399999477909999869984002466056532667632101014777548499999589998999
Q 002494 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (915)
Q Consensus 346 ~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s 425 (915)
.+.+.+++++|+|+. ++.++ ++.|.+|++.++..... +.+|...|++++|+|+|++|++
T Consensus 17 r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~~-------------------~~~H~~~v~~~~~sp~g~~lat 75 (311)
T d1nr0a1 17 RGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCAS 75 (311)
T ss_dssp TTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCEEEEEECCCCCE-EEEEE-CCEEEEEECCCCCEEEE-------------------ECCCCCCEEEEEEECCCCEEEC
T ss_conf 887599999699899-99996-99999999999966179-------------------7478888899999489996722
Q ss_pred EECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEEC--CCCEEEEECCCCEEEEEECCCCCCEEEE
Q ss_conf 98898599999048983233477533457766899916999079999918--9919999967990678961889987899
Q 002494 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (915)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~i 503 (915)
|+.||.|++|++.++..... ..+..|...|.+++|+|+++ ++++++. +..+++|++.+++....+.+|...|.++
T Consensus 76 g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v 152 (311)
T d1nr0a1 76 GDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSV 152 (311)
T ss_dssp EETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEE
T ss_pred CCCCCEEEEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 55673674663101111000-01343357543323331110--0011112211111111111111111111111111111
Q ss_pred EEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEE
Q ss_conf 72037994199999679949999658998236850899917999997999989999633799833999978999268995
Q 002494 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (915)
Q Consensus 504 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (915)
+|+|+++ ..+++|+.|+.|++||+++.........|...+.++.|+|+++++++++. ++.+++||..++..+..+
T Consensus 153 ~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~~~ 227 (311)
T d1nr0a1 153 DFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGVF 227 (311)
T ss_dssp EECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEEC
T ss_pred CCCCCCE-EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCC
T ss_conf 1121110-12000112211111111111111111111111111234764221211111----111100012446411222
Q ss_pred C-------CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCE
Q ss_conf 2-------777874479998599999999968991999969999147997179999983549995999999999589959
Q 002494 584 S-------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (915)
Q Consensus 584 ~-------~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i 656 (915)
. +|.. .|.+++|+|++++|++++.||.|++||+++++++..+..+... ....+.+.+++..+++++.||.|
T Consensus 228 ~~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~i 305 (311)
T d1nr0a1 228 EDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFI 305 (311)
T ss_dssp BCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCCE
T ss_pred CCCCCCCCCCCC-CCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC-CCEEEEEEECCCEEEEEECCCEE
T ss_conf 111111100246-5321024788999999937996999999999699999799986-33299999519999999899979
Q ss_pred EEEECC
Q ss_conf 999869
Q 002494 657 KILANS 662 (915)
Q Consensus 657 ~iwd~~ 662 (915)
++||.+
T Consensus 306 ~~wd~d 311 (311)
T d1nr0a1 306 NFVNPE 311 (311)
T ss_dssp EEEETT
T ss_pred EEEECC
T ss_conf 999588
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.3e-39 Score=265.52 Aligned_cols=342 Identities=13% Similarity=0.123 Sum_probs=230.0
Q ss_pred EEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCE
Q ss_conf 99477909999869984002466056532667632101014777548499999589998999988985999990489832
Q 002494 364 VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL 443 (915)
Q Consensus 364 ~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~~~~~~ 443 (915)
.+..++.+.+|+......... . .....+|.+.|+|++|+|||++|++|+ |+.|++|++.++..+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~---~------------l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~ 96 (388)
T d1erja_ 33 KKQTNDYYILYNPALPREIDV---E------------LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV 96 (388)
T ss_dssp EEECSSCEEEECTTSCCCEEE---E------------EEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE
T ss_pred CCCCCCCEEEECCCCCCCEEE---E------------EEEECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEE
T ss_conf 468897089868877762054---1------------076079999689999999999999994-994899981364057
Q ss_pred EEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEE
Q ss_conf 33477533457766899916999079999918991999996799067896188998789972037994199999679949
Q 002494 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (915)
Q Consensus 444 ~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i 523 (915)
. .+..+....... . .........|...|++++|+|+ ++++++++.||.|
T Consensus 97 ~---~~~~~~~~~~~~----~----------------------~~~~~~~~~~~~~V~~l~~s~~--~~~l~s~~~dg~v 145 (388)
T d1erja_ 97 A---RLSDDSAANKDP----E----------------------NLNTSSSPSSDLYIRSVCFSPD--GKFLATGAEDRLI 145 (388)
T ss_dssp E---EECC-------------------------------------------CCCCBEEEEEECTT--SSEEEEEETTSCE
T ss_pred E---EECCCCCCCCCC----C----------------------CCCCCCCCCCCCCEEEEEECCC--CCCCEECCCCCCC
T ss_conf 6---631665443244----3----------------------2111014677898899998899--9801213444111
Q ss_pred EEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEE
Q ss_conf 99965899823685089991799999799998999963379983399997899926899527778744799985999999
Q 002494 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF 603 (915)
Q Consensus 524 ~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 603 (915)
++|+............|...+.++.+++++..+++++. ++.+++||..+.........+.. .+....+.+++.++
T Consensus 146 ~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 220 (388)
T d1erja_ 146 RIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG----DRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYI 220 (388)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECSSC-EEEEEECSTTCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CEEEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCEE
T ss_conf 12111111111111111111111011111111112221----01565410111111000012454-42112368878758
Q ss_pred EEEECCCCEEEEECCCCCEEEEECC-----CCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCC
Q ss_conf 9996899199996999914799717-----99999835499959999999995899599998699852042202787761
Q 002494 604 LAAGDEFQIKFWDMDNMNMLTTVDA-----DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678 (915)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 678 (915)
++++.||.|++|+..++.....+.. ..+...|++++|+|++.++++++.||.|++|++.++. ..........
T Consensus 221 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~-- 297 (388)
T d1erja_ 221 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN-NKSDSKTPNS-- 297 (388)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------------
T ss_pred EEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC-CCCCCCCCCC--
T ss_conf 9973898199963455730001024433345778987899997999999999789928987515776-4321013444--
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCEEEEECCCCCCC
Q ss_conf 02679988789883013215676432247964588999997323334677841104886021037894467624898996
Q 002494 679 NRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDP 758 (915)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~~~i~iw~~~~~~~~ 758 (915)
.
T Consensus 298 -------------------------------------------------------------------------------~ 298 (388)
T d1erja_ 298 -------------------------------------------------------------------------------G 298 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------------------------C
T ss_conf -------------------------------------------------------------------------------2
Q ss_pred CCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCC
Q ss_conf 63358641786688856999993188528783125515876525556799997111003223149998730014899998
Q 002494 759 SQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKP 838 (915)
Q Consensus 759 ~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h 838 (915)
.... .... |...|.+++|+|++++|++++.||.|++|++. +++.+.. +.+ |
T Consensus 299 ~~~~--~~~~--~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~----------------------~~~~~~~-l~~--H 349 (388)
T d1erja_ 299 TCEV--TYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDKK----------------------SGNPLLM-LQG--H 349 (388)
T ss_dssp CEEE--EEEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEETT----------------------TCCEEEE-EEC--C
T ss_pred CEEE--ECCC--CCCEEEEEEECCCCCEEEEEECCCEEEEEECC----------------------CCCEEEE-EEC--C
T ss_conf 0011--0124--55327899988999999999698979999999----------------------9969999-968--8
Q ss_pred CCCCEEEEEE------ECCCCEEEEEC-CCEEEEEECC
Q ss_conf 8874129997------12997599851-9925996615
Q 002494 839 TEESAACIAL------SKNDSYVMSAS-GGKVSLFNMM 869 (915)
Q Consensus 839 ~~~~i~~l~~------S~dg~~L~s~s-d~~i~iw~l~ 869 (915)
.+.|+++++ +||+++||+|+ ||+|++|+++
T Consensus 350 -~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 350 -RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp -SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred -CCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEE
T ss_conf -9978999984674258999999999189979997621
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.4e-38 Score=260.22 Aligned_cols=292 Identities=19% Similarity=0.302 Sum_probs=248.0
Q ss_pred CEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 2789850-799779999917999399999477909999869984002466056532667632101014777548499999
Q 002494 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (915)
Q Consensus 338 ~~~~~l~-h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~ 416 (915)
+..++|. |.+.|++++|+|+++ +|++|+.||.|++||+.+++.+.. +..|...|.+++|
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~~ 105 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAY 105 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEEE
T ss_pred EEEEEECCCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCEEEEE-------------------EECCCCCEEEEEE
T ss_conf 65279888789888999989999-999997899555631021025799-------------------7246533775676
Q ss_pred CCCCCEEEEEECCCEEEEEEECCCCCE-EEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECC
Q ss_conf 589998999988985999990489832-3347753345776689991699907999991899199999679906789618
Q 002494 417 GPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (915)
Q Consensus 417 spd~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (915)
+|+++++++++.|+.+.+|+....... .....+.+|...........+. .+.....+.....+.............
T Consensus 106 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (340)
T d1tbga_ 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 01211443101332010133222212221110013542110111111111---111112445432001232211111233
Q ss_pred CCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECC
Q ss_conf 89987899720379941999996799499996589982368508999179999979999899996337998339999789
Q 002494 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (915)
Q Consensus 496 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~ 575 (915)
+...+....+.+.. .++++++.|+.+++||+++......+..|...|.+++|+|+++++++++. ++.+++|+..
T Consensus 183 ~~~~~~~~~~~~~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~~ 256 (340)
T d1tbga_ 183 HTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLR 256 (340)
T ss_dssp CSSCEEEEEECTTS--SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred CCEEEEEECCCCCC--CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEC----CCEEEEEEEC
T ss_conf 10157630012442--12687605736999999999488999578898589999799899999969----9969997521
Q ss_pred CCEEEEEECCCC-CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCC
Q ss_conf 992689952777-8744799985999999999689919999699991479971799999835499959999999995899
Q 002494 576 EGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (915)
Q Consensus 576 ~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg 654 (915)
.......+.... ...+.+++|+|+++++++++.||.|++||+.+++.+..+.+|.. .|++++|+|++.+|++|+.||
T Consensus 257 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~--~V~~l~~s~d~~~l~s~s~Dg 334 (340)
T d1tbga_ 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTS
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCC--CEEEEEEECCCCEEEEECCCC
T ss_conf 221111111224457458999989999999997979899999999939899848999--789999908999999990699
Q ss_pred CEEEEE
Q ss_conf 599998
Q 002494 655 GIKILA 660 (915)
Q Consensus 655 ~i~iwd 660 (915)
.|++||
T Consensus 335 ~v~iWd 340 (340)
T d1tbga_ 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred EEEEEC
T ss_conf 799859
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-38 Score=264.05 Aligned_cols=304 Identities=21% Similarity=0.360 Sum_probs=149.5
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE
Q ss_conf 47775484999995899989999889859999904898323347753345776689991699907999991899199999
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 404 ~~~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd 483 (915)
+.+|.++|++++|+|++++|++|+.||.|++||+.+++... .+.+|...|.+++|++++. +++++..++.+..|+
T Consensus 13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~---~~~~h~~~V~~~~~~~~~~--~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 87 (317)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE---EEECCCCCEEEEEEECCCC--CCCCCCCCCCCCCCC
T ss_conf 85888876899993898999999389929999899997999---9957888677776301111--011111111101110
Q ss_pred CCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 67990678961889987899720379941999996799499996589982368508999179999979999899996337
Q 002494 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (915)
Q Consensus 484 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~ 563 (915)
.........+..|...+.++.+++++ ..+++++.|+.+++||+++......+..+...+.+++|+++++++++++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 163 (317)
T d1vyhc1 88 FQGFECIRTMHGHDHNVSSVSIMPNG--DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 163 (317)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCC--CEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCEEEEEEC--
T ss_conf 01111111100000000000016998--55776526752357511443034687167776300001667999999927--
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCC
Q ss_conf 99833999978999268995277787447999859999999996899199996999914799717999998354999599
Q 002494 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (915)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~ 643 (915)
++.+++|+..++.....+.++.. .+.++.++|++......... ..........
T Consensus 164 --d~~v~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~ 216 (317)
T d1vyhc1 164 --DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEAT------------------------GSETKKSGKP 216 (317)
T ss_dssp --TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCC------------------------SCC-------
T ss_pred --CCEEEEEEECCCEEEEEEECCCC-CCEEEEEEECCCCCEEECCC------------------------CCEEEEECCC
T ss_conf --98299975125403478824778-73379986325641110345------------------------6303430258
Q ss_pred CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999995899599998699852042202787761026799887898830132156764322479645889999973233
Q 002494 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (915)
Q Consensus 644 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 723 (915)
+.++++++.|
T Consensus 217 ~~~~~~~~~d---------------------------------------------------------------------- 226 (317)
T d1vyhc1 217 GPFLLSGSRD---------------------------------------------------------------------- 226 (317)
T ss_dssp CCEEEEEETT----------------------------------------------------------------------
T ss_pred CCEEEECCCC----------------------------------------------------------------------
T ss_conf 8614751699----------------------------------------------------------------------
Q ss_pred CCCCCCCEECCCCCEEECCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 34677841104886021037894467624898996633586417866888569999931885287831255158765255
Q 002494 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (915)
Q Consensus 724 ~~~~~~~~~s~dg~~la~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~ 803 (915)
+.+++|++.. +..+. .+.+ |...|.+++|+|++++|++++.||.|++|++..
T Consensus 227 ---------------------~~i~~~~~~~---~~~~~--~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 278 (317)
T d1vyhc1 227 ---------------------KTIKMWDVST---GMCLM--TLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 278 (317)
T ss_dssp ---------------------SEEEEEETTT---TEEEE--EEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred ---------------------CEEEEEECCC---CCEEE--EEEC--CCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
T ss_conf ---------------------7899988899---96889--9968--899879999879999999997989499999999
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCEEEEEEECCCCEEEEEC-CCEEEEEE
Q ss_conf 56799997111003223149998730014899998887412999712997599851-99259966
Q 002494 804 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN 867 (915)
Q Consensus 804 ~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~i~~l~~S~dg~~L~s~s-d~~i~iw~ 867 (915)
++.+.. +.+ | .+.|++++|++|+++|++++ ||+|++||
T Consensus 279 ----------------------~~~~~~-~~~--h-~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 279 ----------------------KRCMKT-LNA--H-EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp ----------------------SCCCEE-EEC--C-SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred ----------------------CCEEEE-ECC--C-CCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf ----------------------919999-928--9-99889999949999999992899499829
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.9e-37 Score=254.59 Aligned_cols=248 Identities=16% Similarity=0.246 Sum_probs=183.6
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE
Q ss_conf 47775484999995899989999889859999904898323347753345776689991699907999991899199999
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 404 ~~~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd 483 (915)
+.+|.+.|++++|+|++++|++|+.||.|++||+.++..+. .+..|...|.+++|+|++. ++++++.|+.+.+|+
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEEE
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEE---EEECCCCCEEEEEEECCCE--EEEEECCCCEEECCC
T ss_conf 88878988899998999999999789955563102102579---9724653377567601211--443101332010133
Q ss_pred CCCC----EEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf 6799----067896188998789972037994199999679949999658998236850899917999997999989999
Q 002494 484 VVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (915)
Q Consensus 484 ~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~ 559 (915)
.... .....+.+|............ ..+.....+.....+.................+....+.+.+..++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp SSSSCSCCCEEEEECCCSSCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEE
T ss_conf 22221222111001354211011111111---111111244543200123221111123310157630012442126876
Q ss_pred EECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEE
Q ss_conf 63379983399997899926899527778744799985999999999689919999699991479971799999835499
Q 002494 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (915)
Q Consensus 560 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~ 639 (915)
.. ++.+++||+++++.+..+.+|.. .|++++|+|+++++++++.||.+++|++........+....+...+++++
T Consensus 203 ~~----d~~v~i~d~~~~~~~~~~~~h~~-~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 277 (340)
T d1tbga_ 203 AC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ET----TTEEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred EC----CCEEEEEECCCCCEEEEEECCCC-CEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEE
T ss_conf 05----73699999999948899957889-85899997998999999699969997521221111111224457458999
Q ss_pred ECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 9599999999958995999986998
Q 002494 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 640 ~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
|+|++.+|++++.||.|++||+.++
T Consensus 278 ~s~~~~~l~~g~~dg~i~iwd~~~~ 302 (340)
T d1tbga_ 278 FSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp ECSSSCEEEEEETTSCEEEEETTTC
T ss_pred ECCCCCEEEEEECCCEEEEEECCCC
T ss_conf 9899999999979798999999999
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.2e-37 Score=255.19 Aligned_cols=345 Identities=15% Similarity=0.173 Sum_probs=210.9
Q ss_pred EEEC-CCCCE-EEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 9850-79977-999991799939999947790999986998400246605653266763210101477754849999958
Q 002494 341 RTLN-QGSNV-MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (915)
Q Consensus 341 ~~l~-h~~~V-~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp 418 (915)
.+|. |.+.| +|++| +++ +|++|+.||.|++||+.+++.+.. +.+|.++|.+++|+|
T Consensus 6 ~tL~GH~~~vitc~~~--~~~-~l~tgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~l~~s~ 63 (355)
T d1nexb2 6 TTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYAH 63 (355)
T ss_dssp EEEECCSSSCEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEET
T ss_pred EEECCCCCCCEEEEEE--CCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCCCCEEEEEECC
T ss_conf 8889837886999998--899-999991899099998999939999-------------------978999889999869
Q ss_pred CCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCC
Q ss_conf 99989999889859999904898323347753345776689991699907999991899199999679906789618899
Q 002494 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (915)
Q Consensus 419 d~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 498 (915)
+ .+|++++.|+.|++|+.......... ....+........+.+++. ++++++.|+.+++|++.+............
T Consensus 64 ~-~~l~s~s~D~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 139 (355)
T d1nexb2 64 G-GILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEHD 139 (355)
T ss_dssp T-TEEEEEETTCCEEEEETTTTEEEEEE-CCCSSCEEEEEEEEETTEE--EEEEEETTSEEEEEECCC-----------C
T ss_pred C-CEEEEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC--EEEEECCCCCEEEEECCCCCEECCCCCCCE
T ss_conf 9-99999964524432111111111111-0011111111111112322--045543888689998567730012465200
Q ss_pred CEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCE
Q ss_conf 87899720379941999996799499996589982368508999179999979999899996337998339999789992
Q 002494 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (915)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (915)
.......+......+ .....+...+. .+.++++.++.+.. ++.+++||..+++
T Consensus 140 -~~~~~~~~~~~~~~~--------------------~~~~~~~~~v~--~~~~~~~~~~~~~~----d~~i~~~d~~~~~ 192 (355)
T d1nexb2 140 -YPLVFHTPEENPYFV--------------------GVLRGHMASVR--TVSGHGNIVVSGSY----DNTLIVWDVAQMK 192 (355)
T ss_dssp -CCEEESCTTTCTTEE--------------------EEEECCSSCEE--EEEEETTEEEEEET----TSCEEEEETTTTE
T ss_pred -ECCCEECCCCCCCEE--------------------EEEEECCCCCC--CCCCCCCEEEEECC----CCEEEEEECCCCC
T ss_conf -010000011234012--------------------10110022210--00025633442114----4204443013110
Q ss_pred EEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCEEE
Q ss_conf 68995277787447999859999999996899199996999914799717999998354999599999999958995999
Q 002494 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (915)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~i 658 (915)
.+....++.. .+.++.++|++..+++++.|+.|++|+..++..+..+..|.. .|+++.++ ++++++++.||.|++
T Consensus 193 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~--~v~~~~~~--~~~l~~~~~dg~i~i 267 (355)
T d1nexb2 193 CLYILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRG 267 (355)
T ss_dssp EEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CCCEEEEC--SSEEEEECTTSEEEE
T ss_pred CEEEEECCCC-CCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCC--CCCCCCCC--CCEEEEEECCCCCCC
T ss_conf 0011000123-321111112100210124563687630122111111111111--11111232--100333201111111
Q ss_pred EECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCE
Q ss_conf 98699852042202787761026799887898830132156764322479645889999973233346778411048860
Q 002494 659 LANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKP 738 (915)
Q Consensus 659 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 738 (915)
||+.++.. .+..|...+.. ...+++++++
T Consensus 268 wd~~~~~~---~~~~~~~~~~~------------------------------------------------~~~~~~~~~~ 296 (355)
T d1nexb2 268 WDANDYSR---KFSYHHTNLSA------------------------------------------------ITTFYVSDNI 296 (355)
T ss_dssp EETTTCCE---EEEEECTTCCC------------------------------------------------CCEEEECSSE
T ss_pred CCCCCCCE---ECCCCCCCCEE------------------------------------------------EEEECCCCCE
T ss_conf 11111110---00124688229------------------------------------------------9998499989
Q ss_pred EECCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 210378944676248989966335864178668885699999318852878312551587652
Q 002494 739 RVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKW 801 (915)
Q Consensus 739 la~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l 801 (915)
++++++++|++|++.+ +..+. ..+.+ |...|.+++|+|+. .+++++.||.++||.+
T Consensus 297 l~~g~d~~i~vwd~~t---g~~~~-~~~~~--~~~~V~~v~~~~~~-~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 297 LVSGSENQFNIYNLRS---GKLVH-ANILK--DADQIWSVNFKGKT-LVAAVEKDGQSFLEIL 352 (355)
T ss_dssp EEEEETTEEEEEETTT---CCBCC-SCTTT--TCSEEEEEEEETTE-EEEEEESSSCEEEEEE
T ss_pred EEEEECCEEEEEECCC---CCEEE-EEECC--CCCCEEEEEECCCE-EEEEEECCCCEEEEEE
T ss_conf 9998099799999999---97988-88458--99989999983991-9999989890999999
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.4e-38 Score=264.13 Aligned_cols=265 Identities=12% Similarity=0.060 Sum_probs=205.6
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 79977999991799939999947790999986998400246605653266763210101477754849999958999899
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~ 424 (915)
..++|+|++|+||++ ++|+|+.||.|++|+..+++.... ..+.+|.++|.+++|+|++++|+
T Consensus 6 ~~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~-----------------~~l~gH~~~V~~l~fsp~~~~l~ 67 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQV-----------------HELKEHNGQVTGVDWAPDSNRIV 67 (371)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEEETTTTEEE
T ss_pred CCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEE-----------------EEECCCCCCEEEEEECCCCCEEE
T ss_conf 998838999989999-999994889899998889978999-----------------99558899888999979999999
Q ss_pred EEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEE----EEEECCCCCCE
Q ss_conf 99889859999904898323347753345776689991699907999991899199999679906----78961889987
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK----QYTFEGHEAPV 500 (915)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v 500 (915)
+++.|+.|++|++.++... ....+.+|...|.+++|+|+++ .+++++.|+.+++|++..... ......|...|
T Consensus 68 s~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v 144 (371)
T d1k8kc_ 68 TCGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV 144 (371)
T ss_dssp EEETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred EEECCCEEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCC--CCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 9979993999862033211-0012232211000111111121--100000257630254420334331110010111222
Q ss_pred EEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEE
Q ss_conf 89972037994199999679949999658998236850899917999997999989999633799833999978999268
Q 002494 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (915)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (915)
.+++|+|+ ++++++++.|+.+++|+............. +.+ .+...+...
T Consensus 145 ~~v~~~p~--~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~----------~~~------------------~~~~~~~~~ 194 (371)
T d1k8kc_ 145 LSLDWHPN--SVLLAAGSCDFKCRIFSAYIKEVEERPAPT----------PWG------------------SKMPFGELM 194 (371)
T ss_dssp EEEEECTT--SSEEEEEETTSCEEEEECCCTTTSCCCCCB----------TTB------------------SCCCTTCEE
T ss_pred CCCCCCCC--CCCEECCCCCCEEEEEEECCCCCCCCCCCC----------CCC------------------CCCCCEEEE
T ss_conf 11111111--111000134767999840157643100122----------111------------------111110112
Q ss_pred EEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 99527778744799985999999999689919999699991479971799999835499959999999995899599998
Q 002494 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (915)
Q Consensus 581 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd 660 (915)
....+|.. .+.+++|+|+++++++++.|+.|++||+..+..+..+..+.. +|++++|+|++.++++| .|+.+++|.
T Consensus 195 ~~~~~~~~-~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~s~~fs~d~~~la~g-~d~~~~~~~ 270 (371)
T d1k8kc_ 195 FESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFT 270 (371)
T ss_dssp EECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEE
T ss_pred EECCCCCC-CEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCC--CCEEEEECCCCCEEEEE-CCCCEEEEE
T ss_conf 44047667-478987512332100001478605886410121000001466--52036546999799998-199267877
Q ss_pred CCCC
Q ss_conf 6998
Q 002494 661 NSDG 664 (915)
Q Consensus 661 ~~~~ 664 (915)
....
T Consensus 271 ~~~~ 274 (371)
T d1k8kc_ 271 YDSA 274 (371)
T ss_dssp EETT
T ss_pred EECC
T ss_conf 6089
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.3e-38 Score=259.78 Aligned_cols=347 Identities=11% Similarity=0.083 Sum_probs=218.2
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCC
Q ss_conf 75484999995899989999889859999904898323347753345776689991699907999991899199999679
Q 002494 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (915)
Q Consensus 407 h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~ 486 (915)
...+|+|++|+||+++||+++.|+.|++|+..+++. .....+.+|.++|.+++|+|+++ ++++++.|+.|++||+.+
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-~~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~ 82 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKG 82 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE-EEEEEECCCCCCEEEEEECCCCC--EEEEEECCCEEEEEEECC
T ss_conf 998838999989999999994889899998889978-99999558899888999979999--999997999399986203
Q ss_pred CEEE--EEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEE----EECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 9067--896188998789972037994199999679949999658998236----8508999179999979999899996
Q 002494 487 GRKQ--YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSCG 560 (915)
Q Consensus 487 ~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~i~~sp~g~~l~~~~ 560 (915)
+... ..+.+|...|.+++|+|++ +.+++++.|+.+++|++....... ....+...+.+++|+|+++++++++
T Consensus 83 ~~~~~~~~~~~~~~~v~~i~~~p~~--~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s 160 (371)
T d1k8kc_ 83 RTWKPTLVILRINRAARCVRWAPNE--KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160 (371)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTS--SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC--CCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 3211001223221100011111112--11000002576302544203343311100101112221111111111100013
Q ss_pred ECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEE
Q ss_conf 33799833999978999268995277787447999859999999996899199996999914799717999998354999
Q 002494 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (915)
Q Consensus 561 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~ 640 (915)
. |+.+++|+.............. +. .+...+........+. ..+.+++|
T Consensus 161 ~----D~~v~v~~~~~~~~~~~~~~~~--------~~-----------------~~~~~~~~~~~~~~~~--~~v~~~~~ 209 (371)
T d1k8kc_ 161 C----DFKCRIFSAYIKEVEERPAPTP--------WG-----------------SKMPFGELMFESSSSC--GWVHGVCF 209 (371)
T ss_dssp T----TSCEEEEECCCTTTSCCCCCBT--------TB-----------------SCCCTTCEEEECCCCS--SCEEEEEE
T ss_pred C----CCEEEEEEECCCCCCCCCCCCC--------CC-----------------CCCCCEEEEEECCCCC--CCEEEEEE
T ss_conf 4----7679998401576431001221--------11-----------------1111101124404766--74789875
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 59999999995899599998699852042202787761026799887898830132156764322479645889999973
Q 002494 641 NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720 (915)
Q Consensus 641 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 720 (915)
+|+++++++++.|+.|++||+.++ ..+..+.+|...+..+
T Consensus 210 s~~g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~s~--------------------------------------- 249 (371)
T d1k8kc_ 210 SANGSRVAWVSHDSTVCLADADKK-MAVATLASETLPLLAV--------------------------------------- 249 (371)
T ss_dssp CSSSSEEEEEETTTEEEEEEGGGT-TEEEEEECSSCCEEEE---------------------------------------
T ss_pred ECCCCCCCCCCCCCCCEEEEEECC-CCEEEEECCCCCCEEE---------------------------------------
T ss_conf 123321000014786058864101-2100000146652036---------------------------------------
Q ss_pred CCCCCCCCCCEECCCCCEEECCCCCCEEEEECCCCCCCCCEEEEECCCCC-CCCCEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 23334677841104886021037894467624898996633586417866-88856999993188528783125515876
Q 002494 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI-AASKVVRLIYTNSGLSLLALASNAVHKLW 799 (915)
Q Consensus 721 ~~~~~~~~~~~~s~dg~~la~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~-h~~~I~~l~~s~d~~~l~~~~~dg~v~iW 799 (915)
.|++|+++++++.++.+++|........ + .+.+.. ..........+....+ ...|......
T Consensus 250 ----------~fs~d~~~la~g~d~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 311 (371)
T d1k8kc_ 250 ----------TFITESSLVAAGHDCFPVLFTYDSAAGK--L---SFGGRLDVPKQSSQRGLTARERF---QNLDKKASSE 311 (371)
T ss_dssp ----------EEEETTEEEEEETTSSCEEEEEETTTTE--E---EECCCCCCC--------CHHHHH---HHCCCCC---
T ss_pred ----------EECCCCCEEEEECCCCEEEEEEECCCCE--E---EEEEEECCCCCCCCCCCCCEEEE---ECCCCEEEEE
T ss_conf ----------5469997999981992678776089862--8---87202067654212462200168---5065205871
Q ss_pred ECCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCEEEEEEECCCC----EEEEEC-CCEEEEEECCCCCCC
Q ss_conf 525556799997111003223149998730014899998887412999712997----599851-992599661589999
Q 002494 800 KWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS----YVMSAS-GGKVSLFNMMTFKPP 874 (915)
Q Consensus 800 ~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~i~~l~~S~dg~----~L~s~s-d~~i~iw~l~t~k~~ 874 (915)
. ...... .....| ...|+++++.+++. .++|++ ||.|++||+++.+..
T Consensus 312 ----------------------~--~~~~~~--~~~~~H-~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~~~ 364 (371)
T d1k8kc_ 312 ----------------------G--SAAAGA--GLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364 (371)
T ss_dssp ------------------------------C--CCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred ----------------------C--CCCCCC--EECCCC-CCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCHHH
T ss_conf ----------------------2--455661--412555-6988999994899865679999918993999969868465
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.3e-37 Score=253.72 Aligned_cols=199 Identities=14% Similarity=0.198 Sum_probs=105.2
Q ss_pred EEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCE-
Q ss_conf 6689991699907999991899199999679906789618899878997203799419999967994999965899823-
Q 002494 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR- 534 (915)
Q Consensus 456 v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~- 534 (915)
+..++++|+++ .++.++ ++.+.+|++.+......+.+|...|++++|+|+ ++++++|+.||.|++||+......
T Consensus 20 ~~~~a~~~~g~--~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~--g~~latg~~dg~i~iwd~~~~~~~~ 94 (311)
T d1nr0a1 20 AVVLGNTPAGD--KIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS--GYYCASGDVHGNVRIWDTTQTTHIL 94 (311)
T ss_dssp CCCCEECTTSS--EEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEESSSTTCCE
T ss_pred EEEEEECCCCC--EEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECC--CCEEECCCCCCEEEEEEEECCCCCC
T ss_conf 59999969989--999996-999999999999661797478888899999489--9967225567367466310111100
Q ss_pred -EEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCE-EEEEECCCCE
Q ss_conf -68508999179999979999899996337998339999789992689952777874479998599999-9999689919
Q 002494 535 -VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR-FLAAGDEFQI 612 (915)
Q Consensus 535 -~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~dg~i 612 (915)
..+..|...|.+++|+|+++++++++.+ .+..+++|+..+++....+.+|.. .|.+++|+|++++ +++++.|+.|
T Consensus 95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~--~~~~~~v~~~~~~~~~~~l~~h~~-~v~~v~~~~~~~~~l~sgs~d~~i 171 (311)
T d1nr0a1 95 KTTIPVFSGPVKDISWDSESKRIAAVGEG--RERFGHVFLFDTGTSNGNLTGQAR-AMNSVDFKPSRPFRIISGSDDNTV 171 (311)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEECC--SSCSEEEEETTTCCBCBCCCCCSS-CEEEEEECSSSSCEEEEEETTSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 00134335754332333111000111122--111111111111111111111111-111111121110120001122111
Q ss_pred EEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 9996999914799717999998354999599999999958995999986998
Q 002494 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
++||+++++....+..|.. .|+++.|+|+++++++++.|+.+++|+..++
T Consensus 172 ~i~d~~~~~~~~~~~~~~~--~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~ 221 (311)
T d1nr0a1 172 AIFEGPPFKFKSTFGEHTK--FVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 221 (311)
T ss_dssp EEEETTTBEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1111111111111111111--1111234764221211111111100012446
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.5e-35 Score=240.08 Aligned_cols=280 Identities=16% Similarity=0.268 Sum_probs=124.1
Q ss_pred EEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 89850-79977999991799939999947790999986998400246605653266763210101477754849999958
Q 002494 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (915)
Q Consensus 340 ~~~l~-h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp 418 (915)
.++|. |.+.|.+ +++++|+ +|++|+.||.|++||+.+++.+.. +.+|...|.+++|++
T Consensus 9 ~~~l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v~~~~ 67 (342)
T d2ovrb2 9 PKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMRD 67 (342)
T ss_dssp CEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEET
T ss_pred CEEECCCCCCEEE-EEEECCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCCCCEEEEEECC
T ss_conf 8898886875099-9997899-999991899099998999979999-------------------948899989999479
Q ss_pred CCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCC
Q ss_conf 99989999889859999904898323347753345776689991699907999991899199999679906789618899
Q 002494 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (915)
Q Consensus 419 d~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 498 (915)
+ +|++++.|+.+++|+........ ....+...+......+ . .+..+..|+.+.+|+..+++....+.....
T Consensus 68 ~--~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 138 (342)
T d2ovrb2 68 N--IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMGHVA 138 (342)
T ss_dssp T--EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred C--CCCCCEECCCCCCCCCCCCCCEE---CCCCCCEEEEEEECCC--C--CCCCCCCCEEEEEEECCCCCCEEEEECCCC
T ss_conf 8--63210000011111111000000---0123330476520246--5--221234440378740355630011100111
Q ss_pred CEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCE
Q ss_conf 87899720379941999996799499996589982368508999179999979999899996337998339999789992
Q 002494 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (915)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (915)
....... ....++.++.|+.+++||.........+..+...+.... +++.++++++. |+.|++||++.++
T Consensus 139 ~~~~~~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~----dg~i~~~d~~~~~ 208 (342)
T d2ovrb2 139 AVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSL----DTSIRVWDVETGN 208 (342)
T ss_dssp CEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEET----TSCEEEEETTTCC
T ss_pred CCEEECC----CCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCC--CCCCEEEEEEC----CCEEEEEECCCCE
T ss_conf 1000001----333024335898699952523436678727544421006--89999999958----9939995255653
Q ss_pred EEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCC-CCCCCCCEEEECCCCCEEEEEECCCCEE
Q ss_conf 689952777874479998599999999968991999969999147997179-9999835499959999999995899599
Q 002494 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (915)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~s~~~dg~i~ 657 (915)
.+..+.+|.. .+.++.++ ++++++++.||.|++|+....+....+..+ .+...+.++.+ +++++++++.||.|+
T Consensus 209 ~~~~~~~~~~-~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~ 283 (342)
T d2ovrb2 209 CIHTLTGHQS-LTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVK 283 (342)
T ss_dssp EEEEECCCCS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEE
T ss_pred EEEEECCCCC-CEEEEECC--CCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCC--CCCEEEEECCCCEEE
T ss_conf 6567416653-20577068--999999748988999865544221112210001101000013--798449990899899
Q ss_pred EEECCCC
Q ss_conf 9986998
Q 002494 658 ILANSDG 664 (915)
Q Consensus 658 iwd~~~~ 664 (915)
+||+.++
T Consensus 284 iwd~~tg 290 (342)
T d2ovrb2 284 LWDLKTG 290 (342)
T ss_dssp EEETTTC
T ss_pred EEECCCC
T ss_conf 9999999
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.4e-36 Score=247.11 Aligned_cols=343 Identities=17% Similarity=0.268 Sum_probs=245.1
Q ss_pred CCCCCCCCE-EEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEE
Q ss_conf 147775484-9999958999899998898599999048983233477533457766899916999079999918991999
Q 002494 403 LLNDAAISV-NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (915)
Q Consensus 403 ~~~~h~~~v-~~i~~spd~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~i 481 (915)
.+.+|...| +|++| ++++|++|+.||.|++||+.+++.+. .+.+|.+.|.+++|+|++ ++++++.|+.+++
T Consensus 7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~i 78 (355)
T d1nexb2 7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 78 (355)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEEE
T ss_pred EECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEE---EEECCCCCEEEEEECCCC---EEEEEECCCCCCC
T ss_conf 889837886999998--89999999189909999899993999---997899988999986999---9999964524432
Q ss_pred EECCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 99679906789618899878997203799419999967994999965899823685089991799999799998999963
Q 002494 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (915)
Q Consensus 482 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~ 561 (915)
|+..........................++..+++++.|+.+++|++............... ......+.
T Consensus 79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~--------- 148 (355)
T d1nexb2 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPE--------- 148 (355)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CC-CEEESCTT---------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEE-CCCEECCC---------
T ss_conf 11111111111100111111111111123220455438886899985677300124652000-10000011---------
Q ss_pred CCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEC
Q ss_conf 37998339999789992689952777874479998599999999968991999969999147997179999983549995
Q 002494 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (915)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s 641 (915)
...........|.. .+. .+.++++.++++..|+.+++||+.+++.+.....+.. .+.++.|+
T Consensus 149 -------------~~~~~~~~~~~~~~-~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~ 210 (355)
T d1nexb2 149 -------------ENPYFVGVLRGHMA-SVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD--RIYSTIYD 210 (355)
T ss_dssp -------------TCTTEEEEEECCSS-CEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEE
T ss_pred -------------CCCCEEEEEEECCC-CCC--CCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCC--CCCCCCCC
T ss_conf -------------23401210110022-210--0002563344211442044430131100011000123--32111111
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999958995999986998520422027877610267998878988301321567643224796458899999732
Q 002494 642 KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVS 721 (915)
Q Consensus 642 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 721 (915)
+++..+++++.|+.|++|+..++ .....+.+|...+..
T Consensus 211 ~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~----------------------------------------- 248 (355)
T d1nexb2 211 HERKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGL----------------------------------------- 248 (355)
T ss_dssp TTTTEEEEEETTSCEEEEETTTC-CEEEEECCCSSCCCE-----------------------------------------
T ss_pred CCCEEEECCCCCCEEEEEECCCC-CCCCCCCCCCCCCCC-----------------------------------------
T ss_conf 21002101245636876301221-111111111111111-----------------------------------------
Q ss_pred CCCCCCCCCEECCCCCEEECCCC-CCEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEE-EECCCCEEEEEECCCEEEEE
Q ss_conf 33346778411048860210378-94467624898996633586417866888569999-93188528783125515876
Q 002494 722 ISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI-YTNSGLSLLALASNAVHKLW 799 (915)
Q Consensus 722 ~~~~~~~~~~~s~dg~~la~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~-~s~d~~~l~~~~~dg~v~iW 799 (915)
++.+++++++++. ++|++|++.+. ... +.. |...+.++. ++++++ +++++.|+.|++|
T Consensus 249 ----------~~~~~~~l~~~~~dg~i~iwd~~~~---~~~----~~~--~~~~~~~~~~~~~~~~-~l~~g~d~~i~vw 308 (355)
T d1nexb2 249 ----------LRLSDKFLVSAAADGSIRGWDANDY---SRK----FSY--HHTNLSAITTFYVSDN-ILVSGSENQFNIY 308 (355)
T ss_dssp ----------EEECSSEEEEECTTSEEEEEETTTC---CEE----EEE--ECTTCCCCCEEEECSS-EEEEEETTEEEEE
T ss_pred ----------CCCCCCEEEEEECCCCCCCCCCCCC---CEE----CCC--CCCCCEEEEEECCCCC-EEEEEECCEEEEE
T ss_conf ----------1232100333201111111111111---100----012--4688229999849998-9999809979999
Q ss_pred ECCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCEEEEEEECCCCEEEEEC-CCEEEEEECC
Q ss_conf 525556799997111003223149998730014899998887412999712997599851-9925996615
Q 002494 800 KWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMM 869 (915)
Q Consensus 800 ~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~i~~l~~S~dg~~L~s~s-d~~i~iw~l~ 869 (915)
++. +++.+...+.+ | .+.|++++|+++ .++++++ ||++++|-++
T Consensus 309 d~~----------------------tg~~~~~~~~~--~-~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~d 353 (355)
T d1nexb2 309 NLR----------------------SGKLVHANILK--D-ADQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353 (355)
T ss_dssp ETT----------------------TCCBCCSCTTT--T-CSEEEEEEEETT-EEEEEEESSSCEEEEEEE
T ss_pred ECC----------------------CCCEEEEEECC--C-CCCEEEEEECCC-EEEEEEECCCCEEEEEEE
T ss_conf 999----------------------99798888458--9-998999998399-199999898909999995
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.3e-36 Score=249.57 Aligned_cols=291 Identities=10% Similarity=0.090 Sum_probs=168.3
Q ss_pred CCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 42789850-79977999991799939999947790999986998400246605653266763210101477754849999
Q 002494 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (915)
Q Consensus 337 ~~~~~~l~-h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~ 415 (915)
|++.+++. |.+.|++++|+|+++ ++++|+.||.|++||+.+++.+... ...|...|.+++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~~------------------~~~h~~~v~~v~ 62 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVF------------------PDVHATMITGIK 62 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECS------------------SCSCSSCEEEEE
T ss_pred CCCCEECCCCCCCCEEEEECCCCC-EEEEECCCCEEEEEECCCCCEEEEE------------------CCCCCCCEEEEE
T ss_conf 861368488887828999979999-9999908992999999999688998------------------378877489988
Q ss_pred ECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECC
Q ss_conf 95899989999889859999904898323347753345776689991699907999991899199999679906789618
Q 002494 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (915)
Q Consensus 416 ~spd~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (915)
|+|++.+ ++++.|+.+++|+...............+...+.+++|++++. ++++ +.++.+.+|+.. +.....
T Consensus 63 ~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~-~~~~~i~~~~~~--~~~~~~-- 134 (299)
T d1nr0a2 63 TTSKGDL-FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVA-ACYKHIAIYSHG--KLTEVP-- 134 (299)
T ss_dssp ECTTSCE-EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEE-EESSEEEEEETT--EEEEEE--
T ss_pred EECCCEE-ECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC-CCCCCCCCCCCC--CCCCCC--
T ss_conf 4033112-1023102688731677620111000111134432100112211--1112-222222111111--111101--
Q ss_pred CCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEE-EECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEEC
Q ss_conf 8998789972037994199999679949999658998236-850899917999997999989999633799833999978
Q 002494 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (915)
Q Consensus 496 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~ 574 (915)
....+.+++|+|++ +++++++.|+.+++||++...... ....|...+.+++|+|+++++++++. ++.+++||.
T Consensus 135 ~~~~~~~~~~s~~~--~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~ 208 (299)
T d1nr0a2 135 ISYNSSCVALSNDK--QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSV 208 (299)
T ss_dssp CSSCEEEEEECTTS--CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEG
T ss_pred CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCC
T ss_conf 11123322111111--111111111111111111111111111111111111111111111111111----111111111
Q ss_pred CCCEEEE---EECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCC-CCCCCCCEEEECCCCCEEEEE
Q ss_conf 9992689---952777874479998599999999968991999969999147997179-999983549995999999999
Q 002494 575 SEGAIKR---TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVT 650 (915)
Q Consensus 575 ~~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~s~ 650 (915)
.++.... .+.+|.. .+++++|+|+++++++++.||.|++||+.++......... .+...+..+.| +++.+|+++
T Consensus 209 ~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~ 286 (299)
T d1nr0a2 209 ANNFELAHTNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSA 286 (299)
T ss_dssp GGTTEESCCCCCCCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEE
T ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEE-CCCCEEEEE
T ss_conf 11111111111111111-1111124666451388828997999989999731489834898896899997-798999999
Q ss_pred ECCCCEEEEECC
Q ss_conf 589959999869
Q 002494 651 TSDNGIKILANS 662 (915)
Q Consensus 651 ~~dg~i~iwd~~ 662 (915)
+.|+.|++||+.
T Consensus 287 s~D~~i~iWdl~ 298 (299)
T d1nr0a2 287 GQDSNIKFWNVP 298 (299)
T ss_dssp ETTSCEEEEECC
T ss_pred ECCCEEEEEECC
T ss_conf 289979999444
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.2e-35 Score=239.43 Aligned_cols=244 Identities=17% Similarity=0.250 Sum_probs=187.2
Q ss_pred CCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEE
Q ss_conf 01477754849999958999899998898599999048983233477533457766899916999079999918991999
Q 002494 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (915)
Q Consensus 402 ~~~~~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~i 481 (915)
..+.+|.+.|.+ +++++|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+++ ++++++.|+.+++
T Consensus 10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~---~~~~h~~~V~~v~~~~~----~l~s~s~D~~~~~ 81 (342)
T d2ovrb2 10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMRDN----IIISGSTDRTLKV 81 (342)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEETT----EEEEEETTSCEEE
T ss_pred EEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEE---EEECCCCCEEEEEECCC----CCCCCEECCCCCC
T ss_conf 898886875099-999789999999189909999899997999---99488999899994798----6321000001111
Q ss_pred EECCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 99679906789618899878997203799419999967994999965899823685089991799999799998999963
Q 002494 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (915)
Q Consensus 482 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~ 561 (915)
|+............+...+....... ..+..+..|+.+.+|+..+................ ..+....++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 155 (342)
T d2ovrb2 82 WNAETGECIHTLYGHTSTVRCMHLHE----KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGAY 155 (342)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE--EEECSSCEEEEET
T ss_pred CCCCCCCCEECCCCCCEEEEEEECCC----CCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEE--ECCCCCEEEEECC
T ss_conf 11110000000123330476520246----52212344403787403556300111001111000--0013330243358
Q ss_pred CCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEC
Q ss_conf 37998339999789992689952777874479998599999999968991999969999147997179999983549995
Q 002494 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (915)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s 641 (915)
++.+++||......+..+.+|.. .+.. +.+++.++++++.||.|++||++.++.+..+..+.. .+.++.++
T Consensus 156 ----d~~i~~~d~~~~~~~~~~~~~~~-~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~ 226 (342)
T d2ovrb2 156 ----DFMVKVWDPETETCLHTLQGHTN-RVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMELK 226 (342)
T ss_dssp ----TSCEEEEEGGGTEEEEEECCCSS-CEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEEE
T ss_pred ----CCEEEEEECCCCEEEEEECCCCC-CCCC--CCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCC--CEEEEECC
T ss_conf ----98699952523436678727544-4210--068999999995899399952556536567416653--20577068
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEEC
Q ss_conf 999999999589959999869985204220
Q 002494 642 KEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (915)
Q Consensus 642 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 671 (915)
++++++++.||.|++|+.... +....+
T Consensus 227 --~~~l~s~s~d~~i~iwd~~~~-~~~~~~ 253 (342)
T d2ovrb2 227 --DNILVSGNADSTVKIWDIKTG-QCLQTL 253 (342)
T ss_dssp --TTEEEEEETTSCEEEEETTTC-CEEEEE
T ss_pred --CCEEEEECCCCEEEEEECCCC-CCCCCC
T ss_conf --999999748988999865544-221112
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9.9e-35 Score=238.87 Aligned_cols=286 Identities=12% Similarity=0.194 Sum_probs=181.5
Q ss_pred EEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEEC-CCCCCEEEEEEECCCCCCEEEEEECCCEEEEE
Q ss_conf 75334577668999169990799999189919999967990678961-88998789972037994199999679949999
Q 002494 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (915)
Q Consensus 448 ~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw 526 (915)
.+.||...|++++|+|+++ +|++|+.|+.|++||+.+++....+. .|...|.+++|++++ .+++++.|+.+++|
T Consensus 7 ~~~GH~~~V~~l~~s~dg~--~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g---~~~~~~~d~~v~~~ 81 (299)
T d1nr0a2 7 VRYGHNKAITALSSSADGK--TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG---DLFTVSWDDHLKVV 81 (299)
T ss_dssp EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS---CEEEEETTTEEEEE
T ss_pred ECCCCCCCCEEEEECCCCC--EEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCC---EEECCCCEEEEEEE
T ss_conf 8488887828999979999--999990899299999999968899837887748998840331---12102310268873
Q ss_pred ECCCCCC---EEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEE
Q ss_conf 6589982---3685089991799999799998999963379983399997899926899527778744799985999999
Q 002494 527 LYDYLGS---RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF 603 (915)
Q Consensus 527 d~~~~~~---~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 603 (915)
+...... ......+...+.+++++++++.++++. ++.+.+|+.. +.......+ .+.+++|+|+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-----~~~i~~~~~~--~~~~~~~~~---~~~~~~~s~~~~~l 151 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-----YKHIAIYSHG--KLTEVPISY---NSSCVALSNDKQFV 151 (299)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-----SSEEEEEETT--EEEEEECSS---CEEEEEECTTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCC--CCCCCCCCC---CCCCCCCCCCCCCC
T ss_conf 1677620111000111134432100112211111222-----2222111111--111101111---23322111111111
Q ss_pred EEEECCCCEEEEECCCCCEEEEE-CCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCC
Q ss_conf 99968991999969999147997-17999998354999599999999958995999986998520422027877610267
Q 002494 604 LAAGDEFQIKFWDMDNMNMLTTV-DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (915)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 682 (915)
++++.||.+++||+.+++..... ..|. ..|++++|+|++.++++++.|+.|++|++.++... ...
T Consensus 152 ~~g~~dg~i~~~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-~~~----------- 217 (299)
T d1nr0a2 152 AVGGQDSKVHVYKLSGASVSEVKTIVHP--AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL-AHT----------- 217 (299)
T ss_dssp EEEETTSEEEEEEEETTEEEEEEEEECS--SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE-SCC-----------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC-----------
T ss_conf 1111111111111111111111111111--11111111111111111111111111111111111-111-----------
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCEEEEECCCCCCCCCEE
Q ss_conf 99887898830132156764322479645889999973233346778411048860210378944676248989966335
Q 002494 683 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 762 (915)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~~~i~iw~~~~~~~~~~~~ 762 (915)
.
T Consensus 218 -------------------------------------------------------------------------------~ 218 (299)
T d1nr0a2 218 -------------------------------------------------------------------------------N 218 (299)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
T ss_conf -------------------------------------------------------------------------------1
Q ss_pred EEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCC
Q ss_conf 86417866888569999931885287831255158765255567999971110032231499987300148999988874
Q 002494 763 ALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES 842 (915)
Q Consensus 763 ~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~ 842 (915)
.+.+ |...|++++|+|++++|++++.|+.+++|++..... ..... ... |+...
T Consensus 219 --~~~~--h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~--------------------~~~~~-~~~--~~~~~ 271 (299)
T d1nr0a2 219 --SWTF--HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD--------------------HPIII-KGA--HAMSS 271 (299)
T ss_dssp --CCCC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS--------------------CCEEE-TTS--STTSC
T ss_pred --CCCC--CCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCC--------------------CEEEE-ECC--CCCCC
T ss_conf --1111--111111112466645138882899799998999973--------------------14898-348--98896
Q ss_pred EEEEEEECCCCEEEEEC-CCEEEEEECC
Q ss_conf 12999712997599851-9925996615
Q 002494 843 AACIALSKNDSYVMSAS-GGKVSLFNMM 869 (915)
Q Consensus 843 i~~l~~S~dg~~L~s~s-d~~i~iw~l~ 869 (915)
+.+++ ++++++|++++ |++|++||+.
T Consensus 272 v~~~~-~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 272 VNSVI-WLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEE-EEETTEEEEEETTSCEEEEECC
T ss_pred EEEEE-ECCCCEEEEEECCCEEEEEECC
T ss_conf 89999-7798999999289979999444
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-34 Score=238.28 Aligned_cols=288 Identities=11% Similarity=0.177 Sum_probs=218.1
Q ss_pred CEEEEEECCCCCEEEEEEECC-CCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCC-CCCEEEEEECC--CCCEE
Q ss_conf 779999917999399999477-909999869984002466056532667632101014777-54849999958--99989
Q 002494 348 NVMSMDFHPQQQTILLVGTNV-GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA-AISVNRCVWGP--DGLML 423 (915)
Q Consensus 348 ~V~~i~fspd~~~ll~~gs~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~i~~sp--d~~~l 423 (915)
.+++++|+|+++. ++.++.+ ..|+.|+......... ..+.+| ...|++++|+| ++.+|
T Consensus 19 ~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~gh~~~~v~~v~fsP~~~g~~l 80 (325)
T d1pgua1 19 FTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPPV-----------------VQFTGHGSSVVTTVKFSPIKGSQYL 80 (325)
T ss_dssp CCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCSE-----------------EEECTTTTSCEEEEEECSSTTCCEE
T ss_pred CEEEEEECCCCCE-EEEEECCCEEEEEEECCCCCCCCE-----------------EEEECCCCCCEEEEEEEECCCCCEE
T ss_conf 8479999899799-999969987999976888876502-----------------8990789998899998117999799
Q ss_pred EEEECCCEEEEEEECCCCCEEEE-----EEEECCCCCEEEEEEECCCCEEEEEEE--ECCCCEEEEECCCCEEEEEECCC
Q ss_conf 99988985999990489832334-----775334577668999169990799999--18991999996799067896188
Q 002494 424 GVAFSKHIVHLYTYNPTGELRQH-----LEIDAHVGGVNDIAFAHPNKQLCIVTC--GDDKMIKVWDVVAGRKQYTFEGH 496 (915)
Q Consensus 424 ~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~h~~~v~~i~~s~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~ 496 (915)
++|+.||+|++|++..+...... ..+..|.++|.+++|++++.. ++++ +.++.+.+|+..+++.+..+.+|
T Consensus 81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~h 158 (325)
T d1pgua1 81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR--LCVVGEGRDNFGVFISWDSGNSLGEVSGH 158 (325)
T ss_dssp EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE--EEEEECCSSCSEEEEETTTCCEEEECCSC
T ss_pred EEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCC--CCEEECCCCCEEEEEEECCCCCCEEEEEC
T ss_conf 9994899779854058862156510025411365673779998999882--20100124404788850233110012001
Q ss_pred CCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEEC---CCCCCEEEEEECCC-CCEEEEEEECCCCCCEEEEE
Q ss_conf 998789972037994199999679949999658998236850---89991799999799-99899996337998339999
Q 002494 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEW 572 (915)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~i~~sp~-g~~l~~~~~~~~~~~~i~iw 572 (915)
...|.+++|+++.. ..+++++.|+.+++|+....+...... .+...+.+++|+|+ +.++++++. |+.|++|
T Consensus 159 ~~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~iw 233 (325)
T d1pgua1 159 SQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCF 233 (325)
T ss_dssp SSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEE
T ss_pred CCCCCCCCCCCCCC-CEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCC----CCCEEEE
T ss_conf 23432111123432-068886211122111122110000000015777752776303453100001123----3210134
Q ss_pred ECCCCEEEEEECCCCCCCEEEEEEC---CCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECC-CCCEEE
Q ss_conf 7899926899527778744799985---999999999689919999699991479971799999835499959-999999
Q 002494 573 NESEGAIKRTYSGFRKRSLGVVQFD---TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLA 648 (915)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~s---p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~ 648 (915)
|.++++.+..+.+|.. .+..+.|+ |++++|++++.|+.|++||+.+++++..+..+.+...+..+++.+ .+.+++
T Consensus 234 d~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (325)
T d1pgua1 234 DGKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 312 (325)
T ss_dssp ETTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred EECCCCCCCCCCCCCC-CCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCEEE
T ss_conf 3001222111111111-111100000036899999995899399999999978899995487406769999988999999
Q ss_pred EEECCCCEEEEEC
Q ss_conf 9958995999986
Q 002494 649 VTTSDNGIKILAN 661 (915)
Q Consensus 649 s~~~dg~i~iwd~ 661 (915)
+++.||.|++||+
T Consensus 313 s~s~dg~i~vwdl 325 (325)
T d1pgua1 313 SLSLDGTLNFYEL 325 (325)
T ss_dssp EEETTSCEEEEET
T ss_pred EEECCCEEEEEEC
T ss_conf 9979999999979
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.1e-32 Score=221.17 Aligned_cols=134 Identities=15% Similarity=0.238 Sum_probs=83.6
Q ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCE-EEEEECCCCEEEEEC
Q ss_conf 8999179999979999899996337998339999789992689952777874479998599999-999968991999969
Q 002494 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR-FLAAGDEFQIKFWDM 617 (915)
Q Consensus 539 ~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~dg~i~iwd~ 617 (915)
.+...+.+++|+++++++++++.+ .+..+.+|+..+++.+..+.+|.. .+.+++|+|++++ +++++.|+.+++|+.
T Consensus 113 ~~~~~v~~v~~s~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~d~~v~~~d~ 189 (325)
T d1pgua1 113 VLAGPISDISWDFEGRRLCVVGEG--RDNFGVFISWDSGNSLGEVSGHSQ-RINACHLKQSRPMRSMTVGDDGSVVFYQG 189 (325)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECC--SSCSEEEEETTTCCEEEECCSCSS-CEEEEEECSSSSCEEEEEETTTEEEEEET
T ss_pred CCCCCEEEEEECCCCCCCCEEECC--CCCEEEEEEECCCCCCEEEEECCC-CCCCCCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 656737799989998822010012--440478885023311001200123-43211112343206888621112211112
Q ss_pred CCCCEEEEECCC-CCCCCCCEEEECCC-CCEEEEEECCCCEEEEECCCCCEEEEECCCCCC
Q ss_conf 999147997179-99998354999599-999999958995999986998520422027877
Q 002494 618 DNMNMLTTVDAD-GGLPASPRLRFNKE-GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAM 676 (915)
Q Consensus 618 ~~~~~~~~~~~~-~~~~~v~~i~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 676 (915)
...+.......+ .+...|++++|+|+ +.++++++.|+.|++||..++ +.+..+.+|..
T Consensus 190 ~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~~~~ 249 (325)
T d1pgua1 190 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQE 249 (325)
T ss_dssp TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEECCBTTB
T ss_pred CCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCC-CCCCCCCCCCC
T ss_conf 2110000000015777752776303453100001123321013430012-22111111111
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.8e-31 Score=214.25 Aligned_cols=286 Identities=10% Similarity=0.089 Sum_probs=174.4
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEE------EEECC
Q ss_conf 799779999917999399999477909999869984002466056532667632101014777548499------99958
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR------CVWGP 418 (915)
Q Consensus 345 h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~------i~~sp 418 (915)
|.+.|+++++++ + ++++|+.|++|++||..+.+........ .. ...|...+.. +..+.
T Consensus 13 H~~~I~~v~~~~--~-~l~S~S~D~~iriWd~~~~~~~~~~~~~-~~------------~~~~~~~~~~~~~~~~~~~~~ 76 (393)
T d1sq9a_ 13 HDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKS-YS------------HFVHKSGLHHVDVLQAIERDA 76 (393)
T ss_dssp SSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGE-EE------------EECCTTCEEEEEEEEEEETTT
T ss_pred CCCCCEEEEEEC--C-EEEEEECCCEEEEEECCCCCCCCCCCEE-EE------------EEECCCCCEEEEEEEEECCCC
T ss_conf 367127999969--9-9999979996998789878877654046-76------------542047716766675001579
Q ss_pred -CCCEEEEEECCCEEEEEEECCCCCEEEEEE-------EECCCCCEEEEEEECCCC---EEEEEEEECCCCEEEEECCCC
Q ss_conf -999899998898599999048983233477-------533457766899916999---079999918991999996799
Q 002494 419 -DGLMLGVAFSKHIVHLYTYNPTGELRQHLE-------IDAHVGGVNDIAFAHPNK---QLCIVTCGDDKMIKVWDVVAG 487 (915)
Q Consensus 419 -d~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~h~~~v~~i~~s~~~~---~~~l~s~~~d~~i~iwd~~~~ 487 (915)
++..+++++.||.|++|++........... ...+...+..++|.++.. ..++++++.|+.+++|++...
T Consensus 77 ~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~ 156 (393)
T d1sq9a_ 77 FELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF 156 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred CCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECC
T ss_conf 98768999948991999982289820565124563243115789668999844788654217999838981999874047
Q ss_pred EE-EEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCC
Q ss_conf 06-78961889987899720379941999996799499996589982368508999179999979999899996337998
Q 002494 488 RK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (915)
Q Consensus 488 ~~-~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~ 566 (915)
.. ...+..+......+. . .......+...+.+++|+|++ ++++++. |
T Consensus 157 ~~~~~~~~~~~~~~~~~~------------~---------------~~~~~~~~~~~~~~v~~s~dg-~lasgs~----D 204 (393)
T d1sq9a_ 157 ADESNSLTLNWSPTLELQ------------G---------------TVESPMTPSQFATSVDISERG-LIATGFN----N 204 (393)
T ss_dssp SSHHHHTTTCCCCEEEEE------------E---------------EECCSSSSCCCCCEEEECTTS-EEEEECT----T
T ss_pred CCCCCEEEEEECCCEECC------------C---------------CEECCCCCCCCEEEEEECCCC-EEEEEEC----C
T ss_conf 753410233103200014------------5---------------100025789867899978999-8999938----9
Q ss_pred CEEEEEECCCCEEEEEEC------CCCCCCEEEEEECCCCCEEEEEECCCC---EEEEECCCCCEEEEECC---------
Q ss_conf 339999789992689952------777874479998599999999968991---99996999914799717---------
Q 002494 567 SHLVEWNESEGAIKRTYS------GFRKRSLGVVQFDTTRNRFLAAGDEFQ---IKFWDMDNMNMLTTVDA--------- 628 (915)
Q Consensus 567 ~~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~sp~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~--------- 628 (915)
+.|++||+.+++.+..+. +|.. .|++++|+|++++|++++.|++ |++||+.+++.+..+..
T Consensus 205 g~i~iwd~~~~~~~~~~~~~~~l~~h~~-~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~ 283 (393)
T d1sq9a_ 205 GTVQISELSTLRPLYNFESQHSMINNSN-SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL 283 (393)
T ss_dssp SEEEEEETTTTEEEEEEECCC---CCCC-CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCC-EEEECCCCCCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEE
T ss_conf 8299986023321100001111124256-387700466532011242898842100103532134443115666643102
Q ss_pred --CCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCC
Q ss_conf --9999983549995999999999589959999869985204220278776102
Q 002494 629 --DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (915)
Q Consensus 629 --~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 680 (915)
.+|...|++++|+|++++|++++.|++|++||+.++ +++.++.+|...+..
T Consensus 284 ~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g-~~~~~l~gH~~~v~~ 336 (393)
T d1sq9a_ 284 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEI 336 (393)
T ss_dssp CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSS
T ss_pred EEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCC-CEEEEECCCCCCCCC
T ss_conf 32023586660013898880698779998999999999-799999886876137
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=7.1e-31 Score=213.69 Aligned_cols=360 Identities=10% Similarity=-0.017 Sum_probs=241.1
Q ss_pred EEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECC
Q ss_conf 39999947790999986998400246605653266763210101477754849999958999899998898599999048
Q 002494 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (915)
Q Consensus 360 ~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~~ 439 (915)
.++++.+.+|.|.+||..+++.+.. +..+ ..+..++|||||+++++++.|+.+.+||+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t 92 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 92 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEEEEECCCCEEEEEECCCCCEEEE-------------------EECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEEC
T ss_conf 8999976999799998999839999-------------------7379-9713799889999999982899978998108
Q ss_pred CCCE--EEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEE
Q ss_conf 9832--33477533457766899916999079999918991999996799067896188998789972037994199999
Q 002494 440 TGEL--RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517 (915)
Q Consensus 440 ~~~~--~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~ 517 (915)
++.. ........|.+.+.+..|+|||+. ++++++.++.+++||..+++.+..+..+...+....+.+.
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~--------- 162 (432)
T d1qksa2 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE--------- 162 (432)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC---------
T ss_pred CCCEEEEEEECCCCCCCEEEECCCCCCCCE-EEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCC---------
T ss_conf 981288998448898776984321888888-9998178982799907655422540247764352201688---------
Q ss_pred ECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEC
Q ss_conf 67994999965899823685089991799999799998999963379983399997899926899527778744799985
Q 002494 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 597 (915)
Q Consensus 518 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s 597 (915)
.....+.++|+|..++.... .++.+.+|+..+++.........+.....+.|+
T Consensus 163 ------------------------~~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~s 215 (432)
T d1qksa2 163 ------------------------PRVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISAERFLHDGGLD 215 (432)
T ss_dssp ------------------------CCEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC
T ss_pred ------------------------CCEEEEEECCCCCEEEEEEC---CCCEEEEEECCCCCCCEEEEECCCCCCCCCEEC
T ss_conf ------------------------85058998789998999981---688299998437875227998336754265388
Q ss_pred CCCCEEEEEE-CCCCEEEEECCCCCEEEEECCCC---CCCCCCEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEECC
Q ss_conf 9999999996-89919999699991479971799---999835499959999999995-899599998699852042202
Q 002494 598 TTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADG---GLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLE 672 (915)
Q Consensus 598 p~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~i~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~ 672 (915)
|+|+++++++ .++.+.+++..+++.+..+.... +........+...+...++.. .++.+.+|...... ..
T Consensus 216 pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~-----~~ 290 (432)
T d1qksa2 216 GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG-----HP 290 (432)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT-----CT
T ss_pred CCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCCCCEECCCCCCCCEEEECCCCCCC-----CC
T ss_conf 9887999951666367776144526888721486224567664101489883102135688358762456655-----54
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCC-CCEEEEE
Q ss_conf 787761026799887898830132156764322479645889999973233346778411048860210378-9446762
Q 002494 673 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWR 751 (915)
Q Consensus 673 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-~~i~iw~ 751 (915)
.|...+. ..++++++..+++++. ++.++|.
T Consensus 291 ~~~~~v~-------------------------------------------------~~~~~~~g~~~~~~s~p~~~~lw~ 321 (432)
T d1qksa2 291 DNAWKIL-------------------------------------------------DSFPALGGGSLFIKTHPNSQYLYV 321 (432)
T ss_dssp TTBTSEE-------------------------------------------------EEEECSCSCCCCEECCTTCSEEEE
T ss_pred CCCCEEE-------------------------------------------------EEEECCCCCEEEEEECCCCCCEEE
T ss_conf 6565777-------------------------------------------------998868997688872688641021
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEC
Q ss_conf 48989966335864178668885699999318852878312551587652555679999711100322314999873001
Q 002494 752 IPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTN 831 (915)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~ 831 (915)
..... .|......+++ ||++.+++++.|+.+++|++....
T Consensus 322 ~~~~~-------------~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~-------------------------- 361 (432)
T d1qksa2 322 DATLN-------------PEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWA-------------------------- 361 (432)
T ss_dssp ECTTC-------------SSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHH--------------------------
T ss_pred CCCCC-------------CCCCEEEEEEE-EECHHHCCCCCCCCEEECCCCCCC--------------------------
T ss_conf 12678-------------88770359999-962461045567844863343444--------------------------
Q ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEE-----C-CCEEEEEECCCCCC
Q ss_conf 489999888741299971299759985-----1-99259966158999
Q 002494 832 DINESKPTEESAACIALSKNDSYVMSA-----S-GGKVSLFNMMTFKP 873 (915)
Q Consensus 832 ~~~~~~h~~~~i~~l~~S~dg~~L~s~-----s-d~~i~iw~l~t~k~ 873 (915)
.+.+ | ...+.+++|||||++++.. . ++.|.+||.+|+|.
T Consensus 362 ~l~~--~-~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~ 406 (432)
T d1qksa2 362 GITE--G-QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 406 (432)
T ss_dssp TCCS--S-CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CCCC--C-CCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEE
T ss_conf 4578--9-9868976798999999999704888888689999999558
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.1e-30 Score=207.13 Aligned_cols=312 Identities=10% Similarity=0.105 Sum_probs=195.7
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCE---EEEEEEECCCCCEEEEEEE---C-CC-CEEEEEEEEC
Q ss_conf 4777548499999589998999988985999990489832---3347753345776689991---6-99-9079999918
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFA---H-PN-KQLCIVTCGD 475 (915)
Q Consensus 404 ~~~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~i~~s---~-~~-~~~~l~s~~~ 475 (915)
..+|...|.++++++ +++++++.|+.|++|+..+.... ........|...+..+... + ++ ...++++++.
T Consensus 10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 87 (393)
T d1sq9a_ 10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 87 (393)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred CCCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEEC
T ss_conf 876367127999969--999999799969987898788776540467654204771676667500157998768999948
Q ss_pred CCCEEEEECCCCEEEE-----EE-----CCCCCCEEEEEEECCCC---CCEEEEEECCCEEEEEECCCCCCEEE-ECCCC
Q ss_conf 9919999967990678-----96-----18899878997203799---41999996799499996589982368-50899
Q 002494 476 DKMIKVWDVVAGRKQY-----TF-----EGHEAPVYSVCPHHKES---IQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPG 541 (915)
Q Consensus 476 d~~i~iwd~~~~~~~~-----~~-----~~~~~~v~~i~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~ 541 (915)
|+.+++|++....... .. ..+...+..+++.+... +.++++++.||.+++|++........ ...+.
T Consensus 88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 167 (393)
T d1sq9a_ 88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167 (393)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred CCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEE
T ss_conf 99199998228982056512456324311578966899984478865421799983898199987404775341023310
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 91799999799998999963379983399997899926899527778744799985999999999689919999699991
Q 002494 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (915)
Q Consensus 542 ~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~ 621 (915)
.. .+... ........+.. .+.+++|+|++ ++++++.||+|++||+.+++
T Consensus 168 ~~-----------~~~~~------------------~~~~~~~~~~~-~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~ 216 (393)
T d1sq9a_ 168 SP-----------TLELQ------------------GTVESPMTPSQ-FATSVDISERG-LIATGFNNGTVQISELSTLR 216 (393)
T ss_dssp CC-----------EEEEE------------------EEECCSSSSCC-CCCEEEECTTS-EEEEECTTSEEEEEETTTTE
T ss_pred CC-----------CEECC------------------CCEECCCCCCC-CEEEEEECCCC-EEEEEECCCCEEEEEECCCC
T ss_conf 32-----------00014------------------51000257898-67899978999-89999389829998602332
Q ss_pred EEEEECCC----CCCCCCCEEEECCCCCEEEEEECCCC---EEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 47997179----99998354999599999999958995---999986998520422027877610267998878988301
Q 002494 622 MLTTVDAD----GGLPASPRLRFNKEGSLLAVTTSDNG---IKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694 (915)
Q Consensus 622 ~~~~~~~~----~~~~~v~~i~~s~~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 694 (915)
.+..+... ++...|++++|+|++++|++++.|++ |++||+.++ ++...+.......
T Consensus 217 ~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g-~~~~~l~~~~~~~---------------- 279 (393)
T d1sq9a_ 217 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSS---------------- 279 (393)
T ss_dssp EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------------------
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEEECCCCCC-EEEEEECCCCCCC----------------
T ss_conf 11000011111242563877004665320112428988421001035321-3444311566664----------------
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 32156764322479645889999973233346778411048860210378944676248989966335864178668885
Q 002494 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 774 (915)
Q Consensus 695 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~ 774 (915)
.....+.+ |...
T Consensus 280 ------------------------------------------------------------------~~~~~~~g--H~~~ 291 (393)
T d1sq9a_ 280 ------------------------------------------------------------------QASLGEFA--HSSW 291 (393)
T ss_dssp ----------------------------------------------------------------------CCBS--BSSC
T ss_pred ------------------------------------------------------------------CCEEEEEC--CCCC
T ss_conf ------------------------------------------------------------------31023202--3586
Q ss_pred EEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCEE----EEEEEC
Q ss_conf 6999993188528783125515876525556799997111003223149998730014899998887412----999712
Q 002494 775 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA----CIALSK 850 (915)
Q Consensus 775 I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~i~----~l~~S~ 850 (915)
|++++|+||+++|++++.|++|++|++.. |+.+.. +++ | ...|. .++|++
T Consensus 292 V~~l~fspd~~~l~S~s~D~~v~vWd~~~----------------------g~~~~~-l~g--H-~~~v~~~~~~~~~~~ 345 (393)
T d1sq9a_ 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKT----------------------KERITT-LNM--H-CDDIEIEEDILAVDE 345 (393)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTT----------------------TEEEEE-EEC--C-GGGCSSGGGCCCBCT
T ss_pred EEEECCCCCCCEEEEECCCCEEEEEECCC----------------------CCEEEE-ECC--C-CCCCCCCCCEEEECC
T ss_conf 66001389888069877999899999999----------------------979999-988--6-876137734899999
Q ss_pred CCCEEEEEC
Q ss_conf 997599851
Q 002494 851 NDSYVMSAS 859 (915)
Q Consensus 851 dg~~L~s~s 859 (915)
++..+++++
T Consensus 346 ~~~~~~~~~ 354 (393)
T d1sq9a_ 346 HGDSLAEPG 354 (393)
T ss_dssp TSCBCSSCC
T ss_pred CCCEEEECC
T ss_conf 999999831
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-28 Score=198.66 Aligned_cols=233 Identities=16% Similarity=0.276 Sum_probs=107.1
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEEC
Q ss_conf 77754849999958999899998898599999048983233477533457766899916999079999918991999996
Q 002494 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (915)
Q Consensus 405 ~~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~ 484 (915)
..|...|+|++ +|+++|++|+.||.|++||+.+++.+. .+.+|...|.+++| +++ ++++++.|+.+++|++
T Consensus 12 ~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~~ 82 (293)
T d1p22a2 12 SETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 82 (293)
T ss_dssp CSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred CCCCCCEEEEE--ECCCEEEEEECCCEEEEEECCCCCEEE---EEECCCCCEEEEEC--CCC--EEECCCCCCCCCCCCC
T ss_conf 89999889998--769999999289939999999991999---99267787763423--630--0210011101100000
Q ss_pred CCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEE---EECCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 799067896188998789972037994199999679949999658998236---85089991799999799998999963
Q 002494 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGT 561 (915)
Q Consensus 485 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~i~~sp~g~~l~~~~~ 561 (915)
..+........+........ .. ...++++..++.+.+|+........ ....+...+....+.+ ..+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s- 155 (293)
T d1p22a2 83 NTGEMLNTLIHHCEAVLHLR--FN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS- 155 (293)
T ss_dssp SSCCEEEEECCCCSCEEEEE--CC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE-
T ss_pred CCCCCCCCCCCCCCCCCCCC--CC--CCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECC--CCCCCCC-
T ss_conf 24641001111110000111--11--10000013566306861344544421210001135431100000--2201106-
Q ss_pred CCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEC
Q ss_conf 37998339999789992689952777874479998599999999968991999969999147997179999983549995
Q 002494 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (915)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s 641 (915)
.++.+++||.++++.+..+.++.. .+..+.++ +..+++++.||.|++||+++...+.....+.. .+ ..++
T Consensus 156 ---~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v--~~~~ 225 (293)
T d1p22a2 156 ---GDRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LV--RCIR 225 (293)
T ss_dssp ---TTSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CE--EEEE
T ss_pred ---CCCCEEEECCCCCCEEEEECCCCC-CCCCCCCC--CCEEEEECCCCEEEEEECCCCEEEEEECCCCE--EE--EECC
T ss_conf ---998604100788838899715544-53221689--87588765899899986655614665214310--00--0014
Q ss_pred CCCCEEEEEECCCCEEEEECCC
Q ss_conf 9999999995899599998699
Q 002494 642 KEGSLLAVTTSDNGIKILANSD 663 (915)
Q Consensus 642 ~~~~~l~s~~~dg~i~iwd~~~ 663 (915)
+++.++++++.||.|++|++..
T Consensus 226 ~~~~~l~sg~~dg~i~iwd~~~ 247 (293)
T d1p22a2 226 FDNKRIVSGAYDGKIKVWDLVA 247 (293)
T ss_dssp CCSSEEEEEETTSCEEEEEHHH
T ss_pred CCCEEEEEECCCCEEEEEECCC
T ss_conf 5410799986799799998888
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5e-30 Score=208.11 Aligned_cols=269 Identities=11% Similarity=0.145 Sum_probs=143.9
Q ss_pred CCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 42789850-79977999991799939999947790999986998400246605653266763210101477754849999
Q 002494 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (915)
Q Consensus 337 ~~~~~~l~-h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~ 415 (915)
.++++++. |..+|++++|+| |++|+.||.|++||+.++. ..|...|.+++
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~------------------------~~h~~~V~~~~ 53 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH------------------------QDHSNLIVSLD 53 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEE------------------------CCCCSCEEEEE
T ss_pred CCEEEEECCCCCCEEEEEECC-----EEEEECCCEEEEEECCCCC------------------------CCCCCCEEEEE
T ss_conf 603499988798649999895-----7898489919999899988------------------------88778789999
Q ss_pred ECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECC
Q ss_conf 95899989999889859999904898323347753345776689991699907999991899199999679906789618
Q 002494 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (915)
Q Consensus 416 ~spd~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (915)
+++++ .+++++.|+++++|++... .....+.++.+++++. .++ .+.++.+.+|+..++..+..+..
T Consensus 54 ~~~~~-~~~s~s~D~~v~~w~~~~~----------~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~ 119 (287)
T d1pgua2 54 NSKAQ-EYSSISWDDTLKVNGITKH----------EFGSQPKVASANNDGF--TAV-LTNDDDLLILQSFTGDIIKSVRL 119 (287)
T ss_dssp CCSTT-CCEEEETTTEEEETTEEEE----------ECSSCEEEEEECSSSE--EEE-EETTSEEEEEETTTCCEEEEEEC
T ss_pred ECCCC-EEEEEEECCCCCCCCCCCC----------CCCCCEEEEEECCCCC--EEE-EEECCCCEEEECCCEEEEEECCC
T ss_conf 65997-2898861012221111111----------1122101466416785--699-96033210000110035431012
Q ss_pred CCCCEEEEEEECCCCCCEEEEEECC-CEEEEEECCCCCCEEEEC-CCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEE
Q ss_conf 8998789972037994199999679-949999658998236850-89991799999799998999963379983399997
Q 002494 496 HEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (915)
Q Consensus 496 ~~~~v~~i~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd 573 (915)
...+.++ ++++ ..+++++.+ +.+++|++.......... .+...+++++|+|++.++++++. ++.|++||
T Consensus 120 -~~~~~~~--~~~~--~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d 190 (287)
T d1pgua2 120 -NSPGSAV--SLSQ--NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYD 190 (287)
T ss_dssp -SSCEEEE--EECS--SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred -CCEEEEE--ECCC--CCEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCC----CCCCCCEE
T ss_conf -2203565--2147--5111000221000210001221000121024785369995167652110111----11100000
Q ss_pred CCCCEEEEE-ECCCCCCCEEEEEECCCC----------CEEEEEECCCCEEEEECCC-CCEEEEECCCCCCCCCCEEEEC
Q ss_conf 899926899-527778744799985999----------9999996899199996999-9147997179999983549995
Q 002494 574 ESEGAIKRT-YSGFRKRSLGVVQFDTTR----------NRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFN 641 (915)
Q Consensus 574 ~~~~~~~~~-~~~~~~~~v~~~~~sp~~----------~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~i~~s 641 (915)
..++..... +.+|.. .+.+++|+|.+ .++++++.|++|++|++.. .+.+..+.+|.. .|+++.|+
T Consensus 191 ~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~--~V~~v~~~ 267 (287)
T d1pgua2 191 LQSREVKTSRWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD--GVNNLLWE 267 (287)
T ss_dssp TTTTEEEECCSCCCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT--CEEEEEEE
T ss_pred ECCCCCCCCCCCCCCC-CCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCC--CEEEEEEC
T ss_conf 0233211000111111-11000001365410012678870276649995999888999758999278789--85899998
Q ss_pred CCCCEEEEEECCCCEEEEEC
Q ss_conf 99999999958995999986
Q 002494 642 KEGSLLAVTTSDNGIKILAN 661 (915)
Q Consensus 642 ~~~~~l~s~~~dg~i~iwd~ 661 (915)
|++ .+++++.|+.|++|++
T Consensus 268 ~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 268 TPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ETT-EEEEEETTSCEEEEEE
T ss_pred CCC-EEEEEECCCEEEEEEE
T ss_conf 999-8999979992999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-30 Score=211.76 Aligned_cols=313 Identities=12% Similarity=0.053 Sum_probs=176.9
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE
Q ss_conf 47775484999995899989999889859999904898323347753345776689991699907999991899199999
Q 002494 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 404 ~~~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd 483 (915)
..+|...|++++|+|++++|++|+.||+|++||+..+..........+|..+|.+++|+|++.. ++++|+.|+.+++|+
T Consensus 7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w~ 85 (342)
T d1yfqa_ 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCC-EEEECCCCCCEEEEE
T ss_conf 8899897888999589999999979992999975699863689885589998899999589997-899812653114542
Q ss_pred CCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 67990678961889987899720379941999996799499996589982368508999179999979999899996337
Q 002494 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (915)
Q Consensus 484 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~ 563 (915)
............+........+... +...+++++.++.+++||++........
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~-------------------------- 138 (342)
T d1yfqa_ 86 LIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIA-------------------------- 138 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEE--------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCCCCEEE--------------------------
T ss_conf 0443200000111111111111111-1111111012221110202344433023--------------------------
Q ss_pred CCCCEEEEEECCCCEEEEEECCC-CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECC-CCCCCCCCEEEEC
Q ss_conf 99833999978999268995277-787447999859999999996899199996999914799717-9999983549995
Q 002494 564 EGESHLVEWNESEGAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-DGGLPASPRLRFN 641 (915)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~i~~s 641 (915)
......+ .........+.+.+..+++++.|+.+++|++........... ........+..+.
T Consensus 139 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (342)
T d1yfqa_ 139 ----------------VKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL 202 (342)
T ss_dssp ----------------EEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC
T ss_pred ----------------ECCCCCCCCCCEEEEEEEECCCCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEE
T ss_conf ----------------0002430012000001000168702465179847887605676341112102542210146763
Q ss_pred C-CCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9-999999995899599998699852042202787761026799887898830132156764322479645889999973
Q 002494 642 K-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720 (915)
Q Consensus 642 ~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 720 (915)
+ ++..+++++.||.+.+|+........... ..
T Consensus 203 ~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~---~~-------------------------------------------- 235 (342)
T d1yfqa_ 203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSS---KR-------------------------------------------- 235 (342)
T ss_dssp SGGGCEEEEEETTSEEEEEECCTTCCSTTCT---TC--------------------------------------------
T ss_pred CCCCCEEEEECCCCEEEEEEECCCCCEEECC---CC--------------------------------------------
T ss_conf 6999878865489959999805986401112---35--------------------------------------------
Q ss_pred CCCCCCCCCCEECCCCCEEECCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 23334677841104886021037894467624898996633586417866888569999931885287831255158765
Q 002494 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWK 800 (915)
Q Consensus 721 ~~~~~~~~~~~~s~dg~~la~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~ 800 (915)
.....+... .....|...|++++|+|++++|++++.||.|++|+
T Consensus 236 ------------------------~~~~~~~~~------------~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD 279 (342)
T d1yfqa_ 236 ------------------------FAFRCHRLN------------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp ------------------------EEEECCCCC------------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred ------------------------CEEEEEEEC------------CCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEE
T ss_conf ------------------------125655531------------47776235431599669844799987999899999
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCEEEEEEECCCCEEEEEC-CCEEEEEECCC
Q ss_conf 25556799997111003223149998730014899998887412999712997599851-99259966158
Q 002494 801 WQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT 870 (915)
Q Consensus 801 l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~i~~l~~S~dg~~L~s~s-d~~i~iw~l~t 870 (915)
+.. ++.+.. +.. ...+..++|++++++|++|+ |+.+++|....
T Consensus 280 ~~~----------------------~~~l~~-~~~----~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~ 323 (342)
T d1yfqa_ 280 LQT----------------------RKKIKN-FAK----FNEDSVVKIACSDNILCLATSDDTFKTNAAID 323 (342)
T ss_dssp TTT----------------------TEEEEE-CCC----CSSSEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred CCC----------------------CCEEEE-ECC----CCCCEEEEEEECCCEEEEEECCCCEEEEEEEC
T ss_conf 998----------------------949887-058----99987999994799999999199278830127
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=2.2e-30 Score=210.46 Aligned_cols=326 Identities=12% Similarity=0.043 Sum_probs=157.3
Q ss_pred EEEECC-CCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 999917-9993999994779099998699840024660565326676321010147775484999995899989999889
Q 002494 351 SMDFHP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK 429 (915)
Q Consensus 351 ~i~fsp-d~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s~~~d 429 (915)
...||| ||+. +|+++ +|.|++|+..++.... ..|...|.+++|+|||+.|++++.+
T Consensus 7 ~~~fSP~dG~~-~a~~~-~g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~~~ 63 (360)
T d1k32a3 7 AEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHGTR 63 (360)
T ss_dssp EEEEEECGGGC-EEEEE-TTEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEEET
T ss_pred CCCCCCCCCCE-EEEEE-CCEEEEEECCCCCEEE---------------------CCCCCCEEEEEECCCCCEEEEEECC
T ss_conf 05146889999-99998-9969999899994899---------------------1699988889998999999999928
Q ss_pred C--EEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEEC
Q ss_conf 8--59999904898323347753345776689991699907999991899199999679906789618899878997203
Q 002494 430 H--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (915)
Q Consensus 430 g--~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 507 (915)
. .+++|+..++... .+..|...+.+++|+|+++ ++++++.++.+++|+..+++....+..+...+.+++|
T Consensus 64 ~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 135 (360)
T d1k32a3 64 EGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI-- 135 (360)
T ss_dssp TEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE--
T ss_pred CCCEEEEEECCCCCEE----EEECCCCEEEEEEECCCCC--CCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHH--
T ss_conf 9989999989999488----7508971277412114543--2100011111000001222100000013552023012--
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEEC------CCCCCEEEEEECCCCEEEE
Q ss_conf 7994199999679949999658998236850899917999997999989999633------7998339999789992689
Q 002494 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS------KEGESHLVEWNESEGAIKR 581 (915)
Q Consensus 508 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~------~~~~~~i~iwd~~~~~~~~ 581 (915)
+|+|++++.+..+ ...+..+++|+..+++...
T Consensus 136 ------------------------------------------spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~ 173 (360)
T d1k32a3 136 ------------------------------------------SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA 173 (360)
T ss_dssp ------------------------------------------CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred ------------------------------------------CCCEEEEEEECCCCCCCEEECCCCCEEEECCCCCCEEE
T ss_conf ------------------------------------------13225665212331211000256542663045571353
Q ss_pred EECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 95277787447999859999999996899199996999914799717999998354999599999999958995999986
Q 002494 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (915)
Q Consensus 582 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~ 661 (915)
... +.. .+..+.|+|+|+.|++++.++.+.+|+........ . ... .+..+.+
T Consensus 174 ~~~-~~~-~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~--~-~~~--~~~~~~~--------------------- 225 (360)
T d1k32a3 174 ATT-ENS-HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF--E-VVS--KPFVIPL--------------------- 225 (360)
T ss_dssp CSC-SSS-BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEEC--C-SCB--EEEEEES---------------------
T ss_pred ECC-CCC-CCCCCCCCCCCCEEEEEECCCCEECCCCCCCCEEE--C-CCC--CEEEEEC---------------------
T ss_conf 035-432-21100125779999999599855753335440232--0-364--1179852---------------------
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEC
Q ss_conf 99852042202787761026799887898830132156764322479645889999973233346778411048860210
Q 002494 662 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 741 (915)
Q Consensus 662 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~ 741 (915)
+...... ..+++++..++.
T Consensus 226 ------------~~~~~~~-------------------------------------------------~~~s~~~~~~~~ 244 (360)
T d1k32a3 226 ------------IPGSPNP-------------------------------------------------TKLVPRSMTSEA 244 (360)
T ss_dssp ------------STTCCCG-------------------------------------------------GGCCCGGGSCCC
T ss_pred ------------CCCCCCC-------------------------------------------------CEECCCCCCCCC
T ss_conf ------------4696012-------------------------------------------------068777671553
Q ss_pred CCC----CCEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEE---CCCCEEEEEECCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 378----9446762489899663358641786688856999993---188528783125515876525556799997111
Q 002494 742 EDV----DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYT---NSGLSLLALASNAVHKLWKWQRTERNPSGKATA 814 (915)
Q Consensus 742 ~~~----~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s---~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~ 814 (915)
... ...++|.+.... +....... +.+.+..+.+. +++.++++++.++.+++|++...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---------- 308 (360)
T d1k32a3 245 GEYDLNDMYKRSSPINVDP-GDYRMIIP-----LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR---------- 308 (360)
T ss_dssp CCCCCTTGGGGCEECSCCC-BCEEEEEE-----CSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC----------
T ss_pred CCEEECCCCCCEEECCCCC-CCEEEEEE-----CCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCC----------
T ss_conf 1136526654001012476-75267541-----3898569999735997069996489987999979997----------
Q ss_pred CCCCEEECCCCCCCEECCCCCCCCCCCCEEEEEEECCCCEEEEEC-CCEEEEEECCCCCCC
Q ss_conf 003223149998730014899998887412999712997599851-992599661589999
Q 002494 815 NVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKPP 874 (915)
Q Consensus 815 ~~~i~l~~~~~~~~~~~~~~~~~h~~~~i~~l~~S~dg~~L~s~s-d~~i~iw~l~t~k~~ 874 (915)
+. .. | .+.|.+++|||||++|++++ ||.|++|++.+++..
T Consensus 309 ------------~~-----~~--~-~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~ 349 (360)
T d1k32a3 309 ------------KV-----TE--V-KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE 349 (360)
T ss_dssp ------------CE-----EE--E-EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSC
T ss_pred ------------EE-----EE--E-CCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCCC
T ss_conf ------------49-----88--6-488687999998989999978994999999999854
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.6e-30 Score=206.27 Aligned_cols=294 Identities=9% Similarity=0.067 Sum_probs=204.3
Q ss_pred CEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 2789850-799779999917999399999477909999869984002466056532667632101014777548499999
Q 002494 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (915)
Q Consensus 338 ~~~~~l~-h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~ 416 (915)
++++... |.+.|++++|+|+++ +|++|+.||+|++||+..+...... ....+|..+|.+++|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~----------------~~~~~h~~~V~~v~f 64 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNF 64 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEE
T ss_pred CEEECCCCCCCCEEEEEEECCCC-EEEEEECCCEEEEEECCCCCCCEEE----------------EEECCCCCCEEEEEE
T ss_conf 75976889989788899958999-9999979992999975699863689----------------885589998899999
Q ss_pred CCCC-CEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEE----EE
Q ss_conf 5899-989999889859999904898323347753345776689991699907999991899199999679906----78
Q 002494 417 GPDG-LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK----QY 491 (915)
Q Consensus 417 spd~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~ 491 (915)
+|++ .++++|+.|+.|++|++......... ...+........+.++.. .+++++.++.+++||++.+.. ..
T Consensus 65 ~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~~ 140 (342)
T d1yfqa_ 65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQAL--TNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp EESSSEEEEEEETTSCEEEECSSSSSSEEEC--BSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred ECCCCCEEEECCCCCCEEEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCEEEEC
T ss_conf 5899978998126531145420443200000--111111111111111111--111101222111020234443302300
Q ss_pred EECCCC--CCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEE---EECCCCCCEEEEEECC-CCCEEEEEEECCCC
Q ss_conf 961889--98789972037994199999679949999658998236---8508999179999979-99989999633799
Q 002494 492 TFEGHE--APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSA-DGTRLFSCGTSKEG 565 (915)
Q Consensus 492 ~~~~~~--~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~i~~sp-~g~~l~~~~~~~~~ 565 (915)
....+. .......+.+. +..+++++.|+.+++|++....... ..........+..+.+ ++..+++++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---- 214 (342)
T d1yfqa_ 141 NLNSNNTKVKNKIFTMDTN--SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI---- 214 (342)
T ss_dssp ESCSSSSSSCCCEEEEEEC--SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----
T ss_pred CCCCCCCCCEEEEEEEECC--CCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECC----
T ss_conf 0243001200000100016--8702465179847887605676341112102542210146763699987886548----
Q ss_pred CCEEEEEECCCCEEE---------EE------ECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCC
Q ss_conf 833999978999268---------99------527778744799985999999999689919999699991479971799
Q 002494 566 ESHLVEWNESEGAIK---------RT------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630 (915)
Q Consensus 566 ~~~i~iwd~~~~~~~---------~~------~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (915)
++.+.+|+....... .. ..+|.. .+++++|+|++++|++|+.||.|++||+.+++.+..+..+.
T Consensus 215 dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~ 293 (342)
T d1yfqa_ 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY-PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCC-CEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred CCEEEEEEECCCCCEEECCCCCEEEEEEECCCCCCCCC-CCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCC
T ss_conf 99599998059864011123512565553147776235-43159966984479998799989999999894988705899
Q ss_pred CCCCCCEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 99983549995999999999589959999869
Q 002494 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 631 ~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~ 662 (915)
....++|+|+++++++++.|+.+++|...
T Consensus 294 ---~~~~~~~s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 294 ---EDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ---SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred ---CCEEEEEEECCCEEEEEECCCCEEEEEEE
T ss_conf ---98799999479999999919927883012
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=2.8e-30 Score=209.77 Aligned_cols=316 Identities=10% Similarity=0.010 Sum_probs=214.5
Q ss_pred EECC-CCCCCEEEEC------CCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCC-CEEEEECCCCCEECCCCEEEE
Q ss_conf 6428-8987435525------8876427898507997799999179993999994779-099998699840024660565
Q 002494 319 SFAG-VAHTPNVYSQ------DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG-DISLWEVGSRERLAHKPFKVW 390 (915)
Q Consensus 319 ~~s~-~g~~~~~~~~------d~~~~~~~~~l~h~~~V~~i~fspd~~~ll~~gs~dg-~i~iwd~~~~~~~~~~~~~~~ 390 (915)
.||| ||+.+++.+. +...+.. ..+.|...|.+++|||||+.+++++..+| .|++|+..+++...
T Consensus 9 ~fSP~dG~~~a~~~~g~v~v~d~~~~~~-~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~------- 80 (360)
T d1k32a3 9 DFSPLDGDLIAFVSRGQAFIQDVSGTYV-LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK------- 80 (360)
T ss_dssp EEEECGGGCEEEEETTEEEEECTTSSBE-EECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-------
T ss_pred CCCCCCCCEEEEEECCEEEEEECCCCCE-EECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEE-------
T ss_conf 1468899999999899699998999948-99169998888999899999999992899899999899994887-------
Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEE
Q ss_conf 32667632101014777548499999589998999988985999990489832334775334577668999169990799
Q 002494 391 DISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI 470 (915)
Q Consensus 391 ~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l 470 (915)
+..|...|.+++|+||+++|++++.++.+++|++.++.... .+..|...+.+++|+|+++ ++
T Consensus 81 -------------~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l 142 (360)
T d1k32a3 81 -------------FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV---IERSREAMITDFTISDNSR--FI 142 (360)
T ss_dssp -------------CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCCEEECTTSC--EE
T ss_pred -------------EECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEE---EEECCCCCCCCHHHCCCEE--EE
T ss_conf -------------50897127741211454321000111110000012221000---0001355202301213225--66
Q ss_pred EEEE----------CCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCE------
Q ss_conf 9991----------899199999679906789618899878997203799419999967994999965899823------
Q 002494 471 VTCG----------DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR------ 534 (915)
Q Consensus 471 ~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------ 534 (915)
+.+. .++.+++|++.+++... +..+...+..+.|+|+ |+.|++++.++.+.+|+.......
T Consensus 143 a~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spd--g~~l~~~s~~~~~~~~d~~~~~~~~~~~~~ 219 (360)
T d1k32a3 143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDAD--SKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219 (360)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTT--SCEEEEEESCCCCCEECSSSSCEECCSCBE
T ss_pred EEECCCCCCCEEECCCCCEEEECCCCCCEEE-ECCCCCCCCCCCCCCC--CCEEEEEECCCCEECCCCCCCCEEECCCCC
T ss_conf 5212331211000256542663045571353-0354322110012577--999999959985575333544023203641
Q ss_pred -EEECCCCCCEEEEEECCCCCEEEEEEECCCC-CCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCC---CEEEEEECC
Q ss_conf -6850899917999997999989999633799-83399997899926899527778744799985999---999999689
Q 002494 535 -VDYDAPGNWCTMMAYSADGTRLFSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDE 609 (915)
Q Consensus 535 -~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~~~~d 609 (915)
.....+......+.|++++..+..+..+..+ ...+..++...+.. ..+..+.+ .+..+.+.+.+ .++++++.+
T Consensus 220 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
T d1k32a3 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLES-SILIYSVPVHGEFAAYYQGAPEK 297 (360)
T ss_dssp EEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSS-EEEEEECCCCCSHHHHHHCCCCC
T ss_pred EEEEECCCCCCCCCEECCCCCCCCCCCEEECCCCCCEEECCCCCCCE-EEEEECCC-CCEEEEEEECCCCEEEEEECCCC
T ss_conf 17985246960120687776715531136526654001012476752-67541389-85699997359970699964899
Q ss_pred CCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf 919999699991479971799999835499959999999995899599998699852042202
Q 002494 610 FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (915)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 672 (915)
+.+++||+.+++... +. + .+.+++|+|||++|++++.||.|++|++.++ +...++.
T Consensus 298 ~~i~~~d~~~~~~~~-~~---~--~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~-~~~~~~~ 353 (360)
T d1k32a3 298 GVLLKYDVKTRKVTE-VK---N--NLTDLRLSADRKTVMVRKDDGKIYTFPLEKP-EDERTVE 353 (360)
T ss_dssp EEEEEEETTTCCEEE-EE---E--EEEEEEECTTSCEEEEEETTSCEEEEESSCT-TSCEECC
T ss_pred CEEEEEECCCCEEEE-EC---C--CCCEEEECCCCCEEEEEECCCEEEEEECCCC-CCCEEEE
T ss_conf 879999799974988-64---8--8687999998989999978994999999999-8545998
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-28 Score=198.56 Aligned_cols=268 Identities=21% Similarity=0.306 Sum_probs=189.5
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 79977999991799939999947790999986998400246605653266763210101477754849999958999899
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 345 h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~ 424 (915)
|...|+|++| |++ +|++|+.||.|++||+.+++.+.. +.+|...|.+++| ++++|+
T Consensus 14 ~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~--~~~~l~ 69 (293)
T d1p22a2 14 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII 69 (293)
T ss_dssp SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred CCCCEEEEEE--CCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCCCCEEEEEC--CCCEEE
T ss_conf 9998899987--699-999992899399999999919999-------------------9267787763423--630021
Q ss_pred EEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCE---EEEEECCCCCCEE
Q ss_conf 9988985999990489832334775334577668999169990799999189919999967990---6789618899878
Q 002494 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR---KQYTFEGHEAPVY 501 (915)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~ 501 (915)
+++.|+.|++|++..+.... ....+. .....+.+... .++++..++.+.+|+..... ....+..|...+.
T Consensus 70 s~s~D~~i~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 142 (293)
T d1p22a2 70 TGSSDSTVRVWDVNTGEMLN---TLIHHC--EAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 142 (293)
T ss_dssp EEETTSCEEEEESSSCCEEE---EECCCC--SCEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCC---CCCCCC--CCCCCCCCCCC--CEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 00111011000002464100---111111--00001111110--000013566306861344544421210001135431
Q ss_pred EEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEE
Q ss_conf 99720379941999996799499996589982368508999179999979999899996337998339999789992689
Q 002494 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (915)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 581 (915)
...+.. ..+++++.|+.+++||.++......+..+...+..+.++ +..+++++. |+.|++||.++...+.
T Consensus 143 ~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~~~~~~~ 212 (293)
T d1p22a2 143 VVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIECGACLR 212 (293)
T ss_dssp EEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETTTCCEEE
T ss_pred CCEECC----CCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCC--CCEEEEECC----CCEEEEEECCCCEEEE
T ss_conf 100000----220110699860410078883889971554453221689--875887658----9989998665561466
Q ss_pred EECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC---------CCEEEEECCCCCCCCCCEEEECCCCCEEEEEEC
Q ss_conf 95277787447999859999999996899199996999---------914799717999998354999599999999958
Q 002494 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN---------MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (915)
Q Consensus 582 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~ 652 (915)
.+.++.. .+.. +++++.++++++.||.|++||+.. ...+..+..|.. .|++++|+ +.+|++++.
T Consensus 213 ~~~~~~~-~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~--~V~~v~~d--~~~l~s~s~ 285 (293)
T d1p22a2 213 VLEGHEE-LVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQFD--EFQIVSSSH 285 (293)
T ss_dssp EECCCSS-CEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEEC--SSCEEECCS
T ss_pred EECCCCE-EEEE--CCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCC--CEEEEEEC--CCEEEEEEC
T ss_conf 5214310-0000--145410799986799799998888864445677545578458899--88999971--999999922
Q ss_pred CCCEEEEE
Q ss_conf 99599998
Q 002494 653 DNGIKILA 660 (915)
Q Consensus 653 dg~i~iwd 660 (915)
||+|++||
T Consensus 286 Dg~i~iWD 293 (293)
T d1p22a2 286 DDTILIWD 293 (293)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEC
T ss_conf 99899959
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.6e-29 Score=201.82 Aligned_cols=202 Identities=12% Similarity=0.082 Sum_probs=133.8
Q ss_pred EEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEE
Q ss_conf 77533457766899916999079999918991999996799067896188998789972037994199999679949999
Q 002494 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (915)
Q Consensus 447 ~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw 526 (915)
..+.+|..+|++++|+| |++|+.||.|++||+.++ ..+|...|.++.+.+. ..+++++.|+++++|
T Consensus 7 ~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~---~~~~s~s~D~~v~~w 72 (287)
T d1pgua2 7 KTISGHNKGITALTVNP------LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA---QEYSSISWDDTLKVN 72 (287)
T ss_dssp EEECCCSSCEEEEETTT------TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST---TCCEEEETTTEEEET
T ss_pred EEECCCCCCEEEEEECC------EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCC---CEEEEEEECCCCCCC
T ss_conf 99988798649999895------789848991999989998-----8887787899996599---728988610122211
Q ss_pred ECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 65899823685089991799999799998999963379983399997899926899527778744799985999999999
Q 002494 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (915)
Q Consensus 527 d~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 606 (915)
++.... ....+..+.+++++..++++. +..+.+|+..+++.+..+.... .. .++++++..++++
T Consensus 73 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~v~ 136 (287)
T d1pgua2 73 GITKHE-------FGSQPKVASANNDGFTAVLTN-----DDDLLILQSFTGDIIKSVRLNS--PG--SAVSLSQNYVAVG 136 (287)
T ss_dssp TEEEEE-------CSSCEEEEEECSSSEEEEEET-----TSEEEEEETTTCCEEEEEECSS--CE--EEEEECSSEEEEE
T ss_pred CCCCCC-------CCCCEEEEEECCCCCEEEEEE-----CCCCEEEECCCEEEEEECCCCC--EE--EEEECCCCCEEEE
T ss_conf 111111-------122101466416785699960-----3321000011003543101222--03--5652147511100
Q ss_pred ECCC-CEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCC
Q ss_conf 6899-199996999914799717999998354999599999999958995999986998520422027877610
Q 002494 607 GDEF-QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (915)
Q Consensus 607 ~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 679 (915)
+.++ .+++|++...+....+... ....+++++|+|++.+|++++.||.|++|++.++......+.+|...+.
T Consensus 137 ~~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~ 209 (287)
T d1pgua2 137 LEEGNTIQVFKLSDLEVSFDLKTP-LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKIN 209 (287)
T ss_dssp ETTTSCEEEEETTEEEEEEECSSC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEEC-CCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf 022100021000122100012102-4785369995167652110111111000000233211000111111110
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=6.9e-28 Score=194.16 Aligned_cols=348 Identities=10% Similarity=0.027 Sum_probs=202.2
Q ss_pred EEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECC
Q ss_conf 39999947790999986998400246605653266763210101477754849999958999899998898599999048
Q 002494 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (915)
Q Consensus 360 ~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~~ 439 (915)
.++++.+.||.|++||..+++.+.. +..+ ..+..++|||||+++++++.|+.+++||+.+
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t 92 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWA 92 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEEEEECCCCEEEEEECCCCCEEEE-------------------EECC-CCEEEEEECCCCCEEEEEECCCCEEEEECCC
T ss_conf 8999975999799999999959999-------------------9689-9803899989999999995899889997568
Q ss_pred CCCEE--EEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEE
Q ss_conf 98323--3477533457766899916999079999918991999996799067896188998789972037994199999
Q 002494 440 TGELR--QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517 (915)
Q Consensus 440 ~~~~~--~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~ 517 (915)
++... ......+|...+.+++|+|||+. +++++..++.+.+||..++.+...+..+...+....+.+++. ...+.
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~- 169 (426)
T d1hzua2 93 KEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR-VAAII- 169 (426)
T ss_dssp SSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC-EEEEE-
T ss_pred CCEEEEEEEECCCCCCCEEEEEEECCCCCE-EEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCC-EEEEE-
T ss_conf 860489998678887645885002688987-999635897699985776412578622677736436427885-03899-
Q ss_pred ECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEE-EECCCCCCCEEEEEE
Q ss_conf 6799499996589982368508999179999979999899996337998339999789992689-952777874479998
Q 002494 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR-TYSGFRKRSLGVVQF 596 (915)
Q Consensus 518 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~ 596 (915)
.++++..++.... +.+.+.+++...+.... ....+.. .+..+.+
T Consensus 170 -------------------------------~s~d~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 214 (426)
T d1hzua2 170 -------------------------------ASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTSIGAAP-FLADGGW 214 (426)
T ss_dssp -------------------------------ECSSSSEEEEEET---TTTEEEEEECSSSSSCEEEEEECCS-SEEEEEE
T ss_pred -------------------------------ECCCCCEEEEECC---CCCEEEEEEECCCCCEEEEEECCCC-CCEEEEE
T ss_conf -------------------------------8787878888527---8976999992466520457756677-5376137
Q ss_pred CCCCCEEEEEE-CCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCC-EEE--EEECCCCEEEEECCCCCEEEEECC
Q ss_conf 59999999996-89919999699991479971799999835499959999-999--995899599998699852042202
Q 002494 597 DTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS-LLA--VTTSDNGIKILANSDGVRLLRMLE 672 (915)
Q Consensus 597 sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~--s~~~dg~i~iwd~~~~~~~~~~~~ 672 (915)
+|++++++++. .+..+.+++..+++.+................+...+. .+. ....|+.+.+|+.....
T Consensus 215 ~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~------- 287 (426)
T d1hzua2 215 DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN------- 287 (426)
T ss_dssp CTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT-------
T ss_pred CCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCC-------
T ss_conf 7888678864201100000002556278875058744434201100698774577415789659885225665-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCEEEEEC
Q ss_conf 78776102679988789883013215676432247964588999997323334677841104886021037894467624
Q 002494 673 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 752 (915)
Q Consensus 673 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~~~i~iw~~ 752 (915)
+.+|.
T Consensus 288 --------------------------------------------------------------------------~~~~~- 292 (426)
T d1hzua2 288 --------------------------------------------------------------------------HPQYA- 292 (426)
T ss_dssp --------------------------------------------------------------------------CTTTB-
T ss_pred --------------------------------------------------------------------------CCCCC-
T ss_conf --------------------------------------------------------------------------20330-
Q ss_pred CCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEE-------EECCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 8989966335864178668885699999318852878-------312551587652555679999711100322314999
Q 002494 753 PDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLA-------LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPS 825 (915)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~-------~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~ 825 (915)
.... ..+.+ |...+..++|+||+++|++ +..|+++++|++...+... .++. .
T Consensus 293 -----~~~~--~~l~g--~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~----------~~~~--~ 351 (426)
T d1hzua2 293 -----WKKV--AELQG--QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY----------QVLP--I 351 (426)
T ss_dssp -----TSEE--EEEEC--SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCC----------EEEC--H
T ss_pred -----CEEE--EEEEC--CCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCE----------EEEC--C
T ss_conf -----2586--89866--887636787489986188850679880228879999898787670----------8950--2
Q ss_pred CCCEECCCCCCCCCCCCEEEEEEECCCCEEE-EE----C-CCEEEEEECCCCCC
Q ss_conf 8730014899998887412999712997599-85----1-99259966158999
Q 002494 826 GTLMTNDINESKPTEESAACIALSKNDSYVM-SA----S-GGKVSLFNMMTFKP 873 (915)
Q Consensus 826 ~~~~~~~~~~~~h~~~~i~~l~~S~dg~~L~-s~----s-d~~i~iw~l~t~k~ 873 (915)
++.. .+.. | ...|.+++|||||++++ ++ + ++.|++||.+|+|.
T Consensus 352 ~~~~--~~~~--~-~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~ 400 (426)
T d1hzua2 352 AEWA--DLGE--G-AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 400 (426)
T ss_dssp HHHH--CCCS--S-CCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred CHHC--CCCC--C-CCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCEE
T ss_conf 1102--5677--8-8518987999999999999724888898299999998738
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=4.8e-27 Score=188.61 Aligned_cols=322 Identities=9% Similarity=0.042 Sum_probs=159.8
Q ss_pred EEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 35525887642789850799779999917999399999477909999869984002466056532667632101014777
Q 002494 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (915)
Q Consensus 328 ~~~~~d~~~~~~~~~l~h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (915)
.+..+|..+++++.++.+...+..++|||||++ +++++.|+.|++||+.+++......++ ...+|
T Consensus 43 ~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~-l~~~~~d~~v~vwd~~t~~~~~~~~i~--------------~~~~~ 107 (426)
T d1hzua2 43 QIALVDGDSKKIVKVIDTGYAVHISRMSASGRY-LLVIGRDARIDMIDLWAKEPTKVAEIK--------------IGIEA 107 (426)
T ss_dssp EEEEEETTTCSEEEEEECCSSEEEEEECTTSCE-EEEEETTSEEEEEETTSSSCEEEEEEE--------------CCSEE
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEEECCCCCE-EEEEECCCCEEEEECCCCCEEEEEEEE--------------CCCCC
T ss_conf 799999999959999968998038999899999-999958998899975688604899986--------------78887
Q ss_pred CCCEEEEEECCCCCEEEEE-ECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEE----
Q ss_conf 5484999995899989999-88985999990489832334775334577668999169990799999189919999----
Q 002494 408 AISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW---- 482 (915)
Q Consensus 408 ~~~v~~i~~spd~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iw---- 482 (915)
.+.+.+++|+|||++++++ ..++.+.+||..++.... .+..+...+....+.+++.. ..+..+.|+...++
T Consensus 108 ~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~i~~s~d~~~~~~~~~~ 183 (426)
T d1hzua2 108 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ---IVSTRGMTVDTQTYHPEPRV-AAIIASHEHPEFIVNVKE 183 (426)
T ss_dssp EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE---EEECCEECSSSCCEESCCCE-EEEEECSSSSEEEEEETT
T ss_pred CCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEE---EEECCCCCCCCEEECCCCCE-EEEEECCCCCEEEEECCC
T ss_conf 64588500268898799963589769998577641257---86226777364364278850-389987878788885278
Q ss_pred -------ECCCCEE-EEEECCCCCCEEEEEEECCCCCCEEEEE-ECCCEEEEEECCCCCCEEEECCCC--CCEEEEEECC
Q ss_conf -------9679906-7896188998789972037994199999-679949999658998236850899--9179999979
Q 002494 483 -------DVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSA 551 (915)
Q Consensus 483 -------d~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~i~~sp 551 (915)
+...... ......+...+..+.+.+++ ++++++ ..+..+.+++.............. .......+..
T Consensus 184 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (426)
T d1hzua2 184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSH--RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH 261 (426)
T ss_dssp TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTS--CEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCCCCCEEEEECCCC--CEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEC
T ss_conf 97699999246652045775667753761377888--6788642011000000025562788750587444342011006
Q ss_pred CCC-EEEEEEECCCCCCEEEEEECCC-------CEEEEEECCCCCCCEEEEEECCCCCEEEE-------EECCCCEEEEE
Q ss_conf 999-8999963379983399997899-------92689952777874479998599999999-------96899199996
Q 002494 552 DGT-RLFSCGTSKEGESHLVEWNESE-------GAIKRTYSGFRKRSLGVVQFDTTRNRFLA-------AGDEFQIKFWD 616 (915)
Q Consensus 552 ~g~-~l~~~~~~~~~~~~i~iwd~~~-------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-------~~~dg~i~iwd 616 (915)
.+. .+..... .+++.+.+|+... ++....+.+|.. .+..++|+|+++++++ ++.+++|++||
T Consensus 262 ~~~~~~~~~~~--~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~-~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd 338 (426)
T d1hzua2 262 PKYGPVWSTSH--LGDGSISLIGTDPKNHPQYAWKKVAELQGQGG-GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 338 (426)
T ss_dssp TTTEEEEEEEC--TTTCEEEEEECCTTTCTTTBTSEEEEEECSSS-CCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEE
T ss_pred CCCCCEEEECC--CCCCEEEEEECCCCCCCCCCCEEEEEEECCCC-CEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEE
T ss_conf 98774577415--78965988522566520330258689866887-6367874899861888506798802288799998
Q ss_pred CCCCCEEEEECC-------CCCCCCCCEEEECCCCCEEEEE-----ECCCCEEEEECCCCCEEEEECCCC
Q ss_conf 999914799717-------9999983549995999999999-----589959999869985204220278
Q 002494 617 MDNMNMLTTVDA-------DGGLPASPRLRFNKEGSLLAVT-----TSDNGIKILANSDGVRLLRMLEGR 674 (915)
Q Consensus 617 ~~~~~~~~~~~~-------~~~~~~v~~i~~s~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~ 674 (915)
+.+++...++.. ..+...+.+++|||||++++++ +.+|.|++||..++ ++...+.++
T Consensus 339 ~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~-k~~~~i~~~ 407 (426)
T d1hzua2 339 LKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL-KLKAVVKDP 407 (426)
T ss_dssp TTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTT-EEEEEECCT
T ss_pred CCCCCCCEEEECCCHHCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCC-EEEEEECCC
T ss_conf 987876708950211025677885189879999999999997248888982999999987-389998789
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=1.3e-25 Score=179.36 Aligned_cols=355 Identities=11% Similarity=0.066 Sum_probs=230.8
Q ss_pred EEECCCCCCCEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCC
Q ss_conf 46428898743552588764278985079977999991799939999947790999986998400246605653266763
Q 002494 318 VSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM 397 (915)
Q Consensus 318 ~~~s~~g~~~~~~~~d~~~~~~~~~l~h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 397 (915)
+..+++| .+..+|..+++++..+.....+..++|||||++ +++++.||.+.+||+.+++......++
T Consensus 36 v~~~d~g---~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~-l~~~s~dg~v~~~d~~t~~~~~~~~i~--------- 102 (432)
T d1qksa2 36 VTLRDAG---QIALIDGSTYEIKTVLDTGYAVHISRLSASGRY-LFVIGRDGKVNMIDLWMKEPTTVAEIK--------- 102 (432)
T ss_dssp EEETTTT---EEEEEETTTCCEEEEEECSSCEEEEEECTTSCE-EEEEETTSEEEEEETTSSSCCEEEEEE---------
T ss_pred EEECCCC---EEEEEECCCCCEEEEEECCCCEEEEEECCCCCE-EEEECCCCCEEEEEEECCCCEEEEEEE---------
T ss_conf 9976999---799998999839999737997137998899999-999828999789981089812889984---------
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCEE-EEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf 21010147775484999995899989-99988985999990489832334775334577668999169990799999189
Q 002494 398 PLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (915)
Q Consensus 398 ~~~~~~~~~h~~~v~~i~~spd~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d 476 (915)
....|.+.+.+..|+|||++| +++..++.+.+||..+++.+. .+..+...+....+.+++.. .+
T Consensus 103 -----~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~--~~----- 167 (432)
T d1qksa2 103 -----IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK---IQSTRGMTYDEQEYHPEPRV--AA----- 167 (432)
T ss_dssp -----CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE---EEECCEECTTTCCEESCCCE--EE-----
T ss_pred -----CCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCEE---EECCCCCCCCCEECCCCCCE--EE-----
T ss_conf -----4889877698432188888899981789827999076554225---40247764352201688850--58-----
Q ss_pred CCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEEC-CCCCCEEEEEECCCCCE
Q ss_conf 91999996799067896188998789972037994199999679949999658998236850-89991799999799998
Q 002494 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTR 555 (915)
Q Consensus 477 ~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~i~~sp~g~~ 555 (915)
+.+++++. .++++...++.+.+|+........... ..+.....+.|+|+|++
T Consensus 168 --------------------------v~~s~dg~-~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~ 220 (432)
T d1qksa2 168 --------------------------ILASHYRP-EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY 220 (432)
T ss_dssp --------------------------EEECSSSS-EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE
T ss_pred --------------------------EEECCCCC-EEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCCCEECCCCCE
T ss_conf --------------------------99878999-899998168829999843787522799833675426538898879
Q ss_pred EEEEEECCCCCCEEEEEECCCCEEEEEECCCCC----CCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEECCCC
Q ss_conf 999963379983399997899926899527778----7447999859999999996-89919999699991479971799
Q 002494 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADG 630 (915)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~ 630 (915)
+++++. ....+.++|..+++.+..+..... .......+...+....+.. .++.+.+|....... ..+.
T Consensus 221 ~~va~~---~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~----~~~~ 293 (432)
T d1qksa2 221 FITAAN---ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH----PDNA 293 (432)
T ss_dssp EEEEEG---GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC----TTTB
T ss_pred EEEECC---CCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCCCCEECCCCCCCCEEEECCCCCCCC----CCCC
T ss_conf 999516---663677761445268887214862245676641014898831021356883587624566555----4656
Q ss_pred CCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 99983549995999999999589959999869985204220278776102679988789883013215676432247964
Q 002494 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (915)
Q Consensus 631 ~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 710 (915)
..+....+++++..+++++.+...++|...+.. .|... .
T Consensus 294 --~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~-------~~~~~-~------------------------------- 332 (432)
T d1qksa2 294 --WKILDSFPALGGGSLFIKTHPNSQYLYVDATLN-------PEAEI-S------------------------------- 332 (432)
T ss_dssp --TSEEEEEECSCSCCCCEECCTTCSEEEEECTTC-------SSHHH-H-------------------------------
T ss_pred --CEEEEEEECCCCCEEEEEECCCCCCEEECCCCC-------CCCCE-E-------------------------------
T ss_conf --577799886899768887268864102112678-------88770-3-------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCC-CCEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEE
Q ss_conf 5889999973233346778411048860210378-944676248989966335864178668885699999318852878
Q 002494 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLA 789 (915)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~ 789 (915)
..+..+|++.+++++. +++++|++.+ .. .+.. |...+.+++|||||++++.
T Consensus 333 ------------------~sv~vpDg~~la~~s~d~~~k~w~~~~---~~-----~l~~--~~~~v~~~~fS~DG~~v~~ 384 (432)
T d1qksa2 333 ------------------GSVAVFDIKAMTGDGSDPEFKTLPIAE---WA-----GITE--GQPRVVQGEFNKDGTEVWF 384 (432)
T ss_dssp ------------------TCEEEEEGGGCCCSSSCCCEEEECHHH---HH-----TCCS--SCCEEEEEEECTTSSEEEE
T ss_pred ------------------EEEEEEECHHHCCCCCCCCEEECCCCC---CC-----CCCC--CCCCEEEEEECCCCCEEEE
T ss_conf ------------------599999624610455678448633434---44-----4578--9986897679899999999
Q ss_pred EE-----CCCEEEEEECCC
Q ss_conf 31-----255158765255
Q 002494 790 LA-----SNAVHKLWKWQR 803 (915)
Q Consensus 790 ~~-----~dg~v~iW~l~~ 803 (915)
+. .++.|+|||-..
T Consensus 385 S~~~~~~~~g~i~i~D~~T 403 (432)
T d1qksa2 385 SVWNGKDQESALVVVDDKT 403 (432)
T ss_dssp EEECCTTSCCEEEEEETTT
T ss_pred EEECCCCCCCCEEEEECCC
T ss_conf 9704888888689999999
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.96 E-value=5.9e-24 Score=168.44 Aligned_cols=276 Identities=11% Similarity=0.086 Sum_probs=212.5
Q ss_pred EEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE-EEECCCEEEEEEEC
Q ss_conf 39999947790999986998400246605653266763210101477754849999958999899-99889859999904
Q 002494 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-VAFSKHIVHLYTYN 438 (915)
Q Consensus 360 ~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~-s~~~dg~i~iwd~~ 438 (915)
|+.++++.++.|.+||+.+++.+.+.. ....+..++|+|||++|+ +++.++.|.+||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~--------------------~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATIP--------------------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE--------------------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEE--------------------CCCCCEEEEEECCCCEEEEEECCCCEEEEEECC
T ss_conf 999997899989999999995999998--------------------899836999928989999997899989999999
Q ss_pred CCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEE
Q ss_conf 89832334775334577668999169990799999189919999967990678961889987899720379941999996
Q 002494 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (915)
Q Consensus 439 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~ 518 (915)
+++.+. .+..+. .+..+.|++++.. +++++..++.+.+|+..+++....+.. .....++.+++++. ..++++.
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~-~~~~~~~ 135 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGK-KLYVTNN 135 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSS-EEEEEET
T ss_pred CCCEEE---EEECCC-CCCCCCCCCCCCC-CCCCCCCCCEEEECCCCCCEEEEECCC-CCCCEEEEEECCCC-EEEEEEC
T ss_conf 894103---200024-6431100011111-111111110011001243024320244-44423787605897-1554201
Q ss_pred CCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECC
Q ss_conf 79949999658998236850899917999997999989999633799833999978999268995277787447999859
Q 002494 519 IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (915)
Q Consensus 519 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp 598 (915)
.++.+.+|+..+.......... .....+.++|++..++++.. ....+.+|+............+. ....+.+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 209 (301)
T d1l0qa2 136 GDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVNP 209 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEECT
T ss_pred CCCCEEEEECCCCCEEEECCCC-CCCEEEEEECCCCCEEEECC---CCCCCCCCCCCCEEEEECCCCCC--CCCEEECCC
T ss_conf 1110011000146303531567-88428886046540131012---11111111111000111013357--750311011
Q ss_pred CCCEEEEEE---CCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEE-EEEECCCCEEEEECCCCCEEEEECC
Q ss_conf 999999996---8991999969999147997179999983549995999999-9995899599998699852042202
Q 002494 599 TRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLE 672 (915)
Q Consensus 599 ~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~ 672 (915)
++..+++++ .++.|++||..+++.+..+..+. .+.+++|+|||+++ ++++.|+.|++||+.++ +++.++.
T Consensus 210 ~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~-~~~~~~~ 283 (301)
T d1l0qa2 210 EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN-TITATMA 283 (301)
T ss_dssp TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred CCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCC---CEEEEEEECCCCEEEEEECCCCEEEEEECCCC-EEEEEEE
T ss_conf 11011110021000023236569981999984899---87799991898999999899996999999999-5999996
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.95 E-value=1.2e-22 Score=159.99 Aligned_cols=269 Identities=13% Similarity=0.088 Sum_probs=198.8
Q ss_pred EEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 55258876427898507997799999179993999994779099998699840024660565326676321010147775
Q 002494 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408 (915)
Q Consensus 329 ~~~~d~~~~~~~~~l~h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 408 (915)
+..+|..++++++++.....+..++|+|||++++++++.++.|.+||+.+++.+.. +..+
T Consensus 14 v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-------------------~~~~- 73 (301)
T d1l0qa2 14 ISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------------------VPAG- 73 (301)
T ss_dssp EEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-------------------EECS-
T ss_pred EEEEECCCCEEEEEEECCCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEE-------------------EECC-
T ss_conf 99999999959999988998369999289899999978999899999998941032-------------------0002-
Q ss_pred CCEEEEEECCCCCEEEEE-ECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCC
Q ss_conf 484999995899989999-8898599999048983233477533457766899916999079999918991999996799
Q 002494 409 ISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (915)
Q Consensus 409 ~~v~~i~~spd~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~ 487 (915)
..+..++|++++..++++ ..++.+.+|+..++.... .+. +.....++.|+|++.. +++++..++.+.+|+..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~dg~~-~~~~~~~~~~~~~~~~~~~ 148 (301)
T d1l0qa2 74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG---TVK-TGKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVTK 148 (301)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEE---ECC-CCCCCEEEEEECCCCE-EEEEECCCCCEEEEECCCC
T ss_conf 4643110001111111111111001100124302432---024-4444237876058971-5542011110011000146
Q ss_pred EEEEEECCCCCCEEEEEEECCCCCCEEEEEEC-CCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCC
Q ss_conf 06789618899878997203799419999967-99499996589982368508999179999979999899996337998
Q 002494 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (915)
Q Consensus 488 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~ 566 (915)
.....+.. ...+..+.++++. ..++++.. ++.+.+|+........... .......+.++++++.++++..+. .+
T Consensus 149 ~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~-~~ 223 (301)
T d1l0qa2 149 AVINTVSV-GRSPKGIAVTPDG--TKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDK-YF 223 (301)
T ss_dssp EEEEEEEC-CSSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECS-SC
T ss_pred CEEEECCC-CCCCEEEEEECCC--CCEEEECCCCCCCCCCCCCCEEEEECCC-CCCCCCEEECCCCCCCCCCCCCCC-EE
T ss_conf 30353156-7884288860465--4013101211111111111000111013-357750311011110111100210-00
Q ss_pred CEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEECCC
Q ss_conf 33999978999268995277787447999859999999-9968991999969999147997179
Q 002494 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDNMNMLTTVDAD 629 (915)
Q Consensus 567 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (915)
+.+++||..+++.+..+..+. .+..++|+|+|++++ +++.++.|++||+.+++.+.++...
T Consensus 224 ~~v~v~D~~t~~~~~~~~~~~--~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg 285 (301)
T d1l0qa2 224 NTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVG 285 (301)
T ss_dssp CEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred EEEEEEECCCCEEEEEECCCC--CEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEECC
T ss_conf 023236569981999984899--87799991898999999899996999999999599999689
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=4.1e-22 Score=156.41 Aligned_cols=291 Identities=10% Similarity=0.077 Sum_probs=123.9
Q ss_pred EEEEEECCCEEEEEECCCCCCEEEECC--CCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCC-
Q ss_conf 999996799499996589982368508--99917999997999989999633799833999978999268995277787-
Q 002494 513 FIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR- 589 (915)
Q Consensus 513 ~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~- 589 (915)
++++++.|+.|.+||+.+.+....+.. +...+.+++|+|||+++++++. .++.|.+||+.+++.+..+..+...
T Consensus 3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~---~~~~v~v~D~~t~~~~~~~~~~~~~~ 79 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred EEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEEC---CCCEEEEEECCCCCEEEEEECCCCCC
T ss_conf 999976799899999999949999987788998237999999899999978---99949999999992988872477731
Q ss_pred ---CEEEEEECCCCCEEEEEE------------CCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCC
Q ss_conf ---447999859999999996------------89919999699991479971799999835499959999999995899
Q 002494 590 ---SLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (915)
Q Consensus 590 ---~v~~~~~sp~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg 654 (915)
.+..++|+|++++++++. .++.+.+||..+++....+.... .+..++|+|+|+++++++.
T Consensus 80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~-- 154 (337)
T d1pbyb_ 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGR-- 154 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEESS--
T ss_pred CCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCCCC---CCEEEEECCCCCEEEEECC--
T ss_conf 25402548986877579995047762034203455521203566775988414568---7218998688888999717--
Q ss_pred CEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 59999869985204220278776102679988789883013215676432247964588999997323334677841104
Q 002494 655 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLV 734 (915)
Q Consensus 655 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~ 734 (915)
.+.+|+..++ +....+..+...... .. ++++..+....... . ...........
T Consensus 155 ~~~~~d~~~~-~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~----~---------------~~~~~~~~~~~ 207 (337)
T d1pbyb_ 155 DLHVMDPEAG-TLVEDKPIQSWEAET-YA------QPDVLAVWNQHESS----G---------------VMATPFYTARK 207 (337)
T ss_dssp SEEEEETTTT-EEEEEECSTTTTTTT-BC------CCBCCCCCCCCTTT----T---------------EEEEEEEEEBT
T ss_pred CCCEEEEECC-CEEEEEECCCCCCCC-EE------CCCCCEEECCCCCC----C---------------EEEEEEEEEEE
T ss_conf 7505663037-278886147754331-13------57763140146653----1---------------24663244410
Q ss_pred CCCEEECCCC-CCEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCC
Q ss_conf 8860210378-944676248989966335864178668885699999318852878312551587652555679999711
Q 002494 735 DVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKAT 813 (915)
Q Consensus 735 dg~~la~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~ 813 (915)
+......... +.+.+|+... + ......... +...+..+++++++.+++.. ++.+++|++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~---------- 269 (337)
T d1pbyb_ 208 DIDPADPTAYRTGLLTMDLET---G-EMAMREVRI--MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK---------- 269 (337)
T ss_dssp TSCTTSGGGEEEEEEEEETTT---C-CEEEEEEEE--CSSCEEEEEECTTSSEEEEE--ESEEEEEETTT----------
T ss_pred CCCEEEECCCCCCEEEEECCC---C-CEEEEEECC--CCCCEEEEEECCCCEEEEEC--CCCEEEEECCC----------
T ss_conf 366045403676179998688---8-588898328--87505888742661399973--55289998988----------
Q ss_pred CCCCCEEECCCCCCCEECCCCCCCCCCCCEEEEEEECCCCEEEEEC-CCEEEEEECCCCCC
Q ss_conf 1003223149998730014899998887412999712997599851-99259966158999
Q 002494 814 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKP 873 (915)
Q Consensus 814 ~~~~i~l~~~~~~~~~~~~~~~~~h~~~~i~~l~~S~dg~~L~s~s-d~~i~iw~l~t~k~ 873 (915)
+..+.. +. + ...+.+++|||||++|++++ |++|++||+.+++.
T Consensus 270 ------------~~~~~~-~~---~-~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~ 313 (337)
T d1pbyb_ 270 ------------NASIKR-VP---L-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp ------------TEEEEE-EE---C-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred ------------CCEEEE-EC---C-CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
T ss_conf ------------969999-74---8-99889999978999999994999299999998769
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=7.8e-22 Score=154.56 Aligned_cols=283 Identities=8% Similarity=-0.008 Sum_probs=180.0
Q ss_pred EEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE-EEECCCEEEEEEEC
Q ss_conf 39999947790999986998400246605653266763210101477754849999958999899-99889859999904
Q 002494 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-VAFSKHIVHLYTYN 438 (915)
Q Consensus 360 ~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~-s~~~dg~i~iwd~~ 438 (915)
.++++++.|+.|.+||+.+++.+.... ...+...+.+++|+|||++++ +++.++.|.+||+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~-----------------~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~ 64 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVIT-----------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEE-----------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEE-----------------CCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECC
T ss_conf 699997679989999999994999998-----------------778899823799999989999997899949999999
Q ss_pred CCCCEEEEEEEE--CCCCCEEEEEEECCCCEEEEEEEE------------CCCCEEEEECCCCEEEEEECCCCCCEEEEE
Q ss_conf 898323347753--345776689991699907999991------------899199999679906789618899878997
Q 002494 439 PTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCG------------DDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (915)
Q Consensus 439 ~~~~~~~~~~~~--~h~~~v~~i~~s~~~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~ 504 (915)
+++.+....... .+...+..++|+|+++ +++++. .+..+.+||..+++....+. +...+..+.
T Consensus 65 t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~ 141 (337)
T d1pbyb_ 65 TGETLGRIDLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLA 141 (337)
T ss_dssp TCCEEEEEECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEE
T ss_pred CCCEEEEEECCCCCCCCCCEEEEEECCCCC--EEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECC-CCCCCEEEE
T ss_conf 992988872477731254025489868775--79995047762034203455521203566775988414-568721899
Q ss_pred EECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCE----------EE---EEE-E------CCC
Q ss_conf 203799419999967994999965899823685089991799999799998----------99---996-3------379
Q 002494 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR----------LF---SCG-T------SKE 564 (915)
Q Consensus 505 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~----------l~---~~~-~------~~~ 564 (915)
+++++ .++++++. .+.+||..+.........+... ....+++++.. .. ... . ...
T Consensus 142 ~s~dg--~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (337)
T d1pbyb_ 142 WARDG--SKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTA 216 (337)
T ss_dssp ECTTS--SCEEEESS--SEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGG
T ss_pred ECCCC--CEEEEECC--CCCEEEEECCCEEEEEECCCCC-CCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECC
T ss_conf 86888--88999717--7505663037278886147754-3311357763140146653124663244410366045403
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCC
Q ss_conf 98339999789992689952777874479998599999999968991999969999147997179999983549995999
Q 002494 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (915)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~ 644 (915)
.+..+.+|+..++........+.........++|++.+++.+ ++.+++||+.+++.+..+.... .+.+++|+|||
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dG 291 (337)
T d1pbyb_ 217 YRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNVSTDG 291 (337)
T ss_dssp EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEECTTS
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCEEEEEC--CCCEEEEECCCCCEEEEECCCC---CEEEEEECCCC
T ss_conf 676179998688858889832887505888742661399973--5528999898896999974899---88999997899
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEECCC
Q ss_conf 99999958995999986998520422027
Q 002494 645 SLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (915)
Q Consensus 645 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 673 (915)
+++++++.|+.|.+||..++ +.+..+.-
T Consensus 292 ~~l~v~~~~~~i~v~D~~t~-~~v~~i~~ 319 (337)
T d1pbyb_ 292 STVWLGGALGDLAAYDAETL-EKKGQVDL 319 (337)
T ss_dssp CEEEEESBSSEEEEEETTTC-CEEEEEEC
T ss_pred CEEEEEECCCCEEEEECCCC-CEEEEEEC
T ss_conf 99999949992999999987-69899988
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.92 E-value=9.4e-22 Score=154.05 Aligned_cols=75 Identities=11% Similarity=0.106 Sum_probs=38.2
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCEEEEEEEC
Q ss_conf 88856999993188528783125515876525556799997111003223149998730014899998887412999712
Q 002494 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (915)
Q Consensus 771 h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~i~~l~~S~ 850 (915)
+...+..+.+++++.+++.... +.+.+|+.. +++.+.. +. + ...+++++|||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~----------------------~~~~~~~-~~---~-~~~~~~va~s~ 301 (346)
T d1jmxb_ 250 LTELYFTGLRSPKDPNQIYGVL-NRLAKYDLK----------------------QRKLIKA-AN---L-DHTYYCVAFDK 301 (346)
T ss_dssp CSSCEEEEEECSSCTTEEEEEE-SEEEEEETT----------------------TTEEEEE-EE---C-SSCCCEEEECS
T ss_pred CCCEEEEEEEECCCCEEEEECC-CEEEEEECC----------------------CCCEEEE-EC---C-CCCEEEEEECC
T ss_conf 5660688897179978999429-838999899----------------------9939999-74---9-99778999968
Q ss_pred CCCEEEEEC-CCEEEEEECCCCCC
Q ss_conf 997599851-99259966158999
Q 002494 851 NDSYVMSAS-GGKVSLFNMMTFKP 873 (915)
Q Consensus 851 dg~~L~s~s-d~~i~iw~l~t~k~ 873 (915)
||++|++++ |+.|++||+.+++.
T Consensus 302 DG~~l~v~~~d~~v~v~D~~t~~~ 325 (346)
T d1jmxb_ 302 KGDKLYLGGTFNDLAVFNPDTLEK 325 (346)
T ss_dssp SSSCEEEESBSSEEEEEETTTTEE
T ss_pred CCCEEEEEECCCCEEEEECCCCCE
T ss_conf 999999994899299999965879
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.92 E-value=1.5e-22 Score=159.28 Aligned_cols=106 Identities=8% Similarity=0.037 Sum_probs=73.9
Q ss_pred CCEEEEEECCCCEEEEEEC-CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCC
Q ss_conf 8339999789992689952-777874479998599999999968991999969999147997179999983549995999
Q 002494 566 ESHLVEWNESEGAIKRTYS-GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (915)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~ 644 (915)
...+.+|+..++....... .+.. .+..+.+++++..++.... +.+.+||..+++.+..+... + .+.+++|+|||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~-~--~~~~va~s~DG 303 (346)
T d1jmxb_ 229 LYGYLSVDLKTGKTHTQEFADLTE-LYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLD-H--TYYCVAFDKKG 303 (346)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSS-CEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECS-S--CCCEEEECSSS
T ss_pred CCEEEEEECCCCCEEEEEEECCCC-EEEEEEEECCCCEEEEECC-CEEEEEECCCCCEEEEECCC-C--CEEEEEECCCC
T ss_conf 834999977788368787631566-0688897179978999429-83899989999399997499-9--77899996899
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEECCCCCCC
Q ss_conf 999999589959999869985204220278776
Q 002494 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMD 677 (915)
Q Consensus 645 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 677 (915)
+++++++.|+.|++||..++ +.+..+....+.
T Consensus 304 ~~l~v~~~d~~v~v~D~~t~-~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 304 DKLYLGGTFNDLAVFNPDTL-EKVKNIKLPGGD 335 (346)
T ss_dssp SCEEEESBSSEEEEEETTTT-EEEEEEECSSSC
T ss_pred CEEEEEECCCCEEEEECCCC-CEEEEEECCCCC
T ss_conf 99999948992999999658-797999889998
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.91 E-value=1.7e-19 Score=139.28 Aligned_cols=61 Identities=7% Similarity=0.007 Sum_probs=25.6
Q ss_pred CCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCE--EEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf 899199996999914799717999998354999599999--99995899599998699852042202
Q 002494 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL--LAVTTSDNGIKILANSDGVRLLRMLE 672 (915)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~ 672 (915)
.++.+.+||..+++.+..+.... .+..++|+|||+. +++++.|+.|++||+.++ +.++.+.
T Consensus 296 ~~~~v~~~d~~t~~~~~~~~~~~---~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg-~~~~~~~ 358 (373)
T d2madh_ 296 AAKEVTSVTGLVGQTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQSTV 358 (373)
T ss_pred CCCEEEEEECCCCCEEEEECCCC---CEEEEEECCCCCEEEEEEECCCCEEEEEECCCC-CEEEEEC
T ss_conf 89869999899996989866899---825899998999899999679992999999999-8999988
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.90 E-value=8.5e-18 Score=128.19 Aligned_cols=208 Identities=13% Similarity=0.016 Sum_probs=116.2
Q ss_pred CCCCCCEEEEEECCCCCEEEEEE-----CCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEE-----
Q ss_conf 77754849999958999899998-----89859999904898323347753345776689991699907999991-----
Q 002494 405 NDAAISVNRCVWGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG----- 474 (915)
Q Consensus 405 ~~h~~~v~~i~~spd~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~----- 474 (915)
..+..++.+++++|||+.++... ..+.+++||..+++.+. .+..+. ...++|+|||+ ++++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~--~~~~a~SpDG~--~l~va~~~~~~ 89 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGF--LPNPVAAHSGS--EFALASTSFSR 89 (373)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEE---EEECCC--CCCEEECCCCC--EEEEEEECCCC
T ss_conf 567898656301899978999734225787659999899997999---995798--86079868999--89999605775
Q ss_pred -----CCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEE
Q ss_conf -----899199999679906789618899878997203799419999967994999965899823685089991799999
Q 002494 475 -----DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAY 549 (915)
Q Consensus 475 -----~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~ 549 (915)
.++.|.+||..+++.+..+..+......+...+ ..+.|
T Consensus 90 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~ 132 (373)
T d2madh_ 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-------------------------------------WMNAN 132 (373)
T ss_pred CCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCC-------------------------------------CCEEE
T ss_conf 32124531899997778938889726885136851689-------------------------------------70899
Q ss_pred CCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEE-EEEECCCCEEEEECCCCCEEEEECC
Q ss_conf 799998999963379983399997899926899527778744799985999999-9996899199996999914799717
Q 002494 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTVDA 628 (915)
Q Consensus 550 sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (915)
+++++.++....+ .+..+.+|+....+...... ...++.++|+++.+ ++.+.|+.+.+|+...+........
T Consensus 133 s~dg~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~ 205 (373)
T d2madh_ 133 TPNNADLLFFQFA--AGPAVGLVVQGGSSDDQLLS-----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG 205 (373)
T ss_pred EECCCCEEEEEEC--CCCCEEEEECCCCEEEEEEC-----CCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEE
T ss_conf 8589937999986--98746776236872899824-----5206999628991999994799399997477426678863
Q ss_pred CC----CCCCCCEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 99----9998354999599999999958995999986998
Q 002494 629 DG----GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 629 ~~----~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
.. .........+++++.++ ..+.++.+.+|+..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~ 244 (373)
T d2madh_ 206 AMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAA 244 (373)
T ss_pred ECCCCCCCCEEEEEEECCCCEEE-EECCCCEEEEEECCCC
T ss_conf 00366753043458878994299-9258965999976899
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1.7e-18 Score=132.79 Aligned_cols=280 Identities=13% Similarity=0.148 Sum_probs=154.4
Q ss_pred EEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-CCEEEEEEECC
Q ss_conf 99999477909999869984002466056532667632101014777548499999589998999988-98599999048
Q 002494 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNP 439 (915)
Q Consensus 361 ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s~~~-dg~i~iwd~~~ 439 (915)
++++++.++.|++|++.....+.... ...+.+.+..++|+|||++|++++. |+.|.+|++..
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~-----------------~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~ 68 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQ-----------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEE-----------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEE-----------------EECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEEC
T ss_conf 99987899938999983999769999-----------------9757998868999589799999977899699999968
Q ss_pred CCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEE-CCCCEEEEECCCCEEEE--EECCCCCCEEEEEEECCCCCCEEEE
Q ss_conf 98323347753345776689991699907999991-89919999967990678--9618899878997203799419999
Q 002494 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFS 516 (915)
Q Consensus 440 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~~l~s 516 (915)
............+...+..++|+|||+ ++++++ .++.+.+|+........ ....+...+.++.+++++ ++++.
T Consensus 69 ~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~--~~~~~ 144 (333)
T d1ri6a_ 69 DDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN--RTLWV 144 (333)
T ss_dssp TTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS--SEEEE
T ss_pred CCCCEEEEEECCCCCCCEEEEECCCCC--EEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECC--EEEEC
T ss_conf 987079853013699854999959998--87420568883022001110000001003778531498863010--13102
Q ss_pred EE-CCCEEEEEECCCCCCEEE------ECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCC--E--EEEEECC
Q ss_conf 96-799499996589982368------50899917999997999989999633799833999978999--2--6899527
Q 002494 517 TA-IDGKIKAWLYDYLGSRVD------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--A--IKRTYSG 585 (915)
Q Consensus 517 ~~-~dg~i~iwd~~~~~~~~~------~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~--~--~~~~~~~ 585 (915)
++ .+..+.+|+......... ..........++|++++..++.... ..+...+++.... . .......
T Consensus 145 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~ 221 (333)
T d1ri6a_ 145 PALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECVQTLDM 221 (333)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEEEEEEC
T ss_pred CCCCCCEEEEEEECCCCCCEEEECEEEEEECCCCCCEEEEECCCEEEEEECC---CCCCEEEEEECCCCCCEEEEEEEEE
T ss_conf 5655420568973268741001000133403887527999602014786204---6672178851035552021002234
Q ss_pred C-----CCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEECC-CCCCCCCCEEEECCCCCEEEEEEC-CCCEE
Q ss_conf 7-----787447999859999999996-899199996999914799717-999998354999599999999958-99599
Q 002494 586 F-----RKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDA-DGGLPASPRLRFNKEGSLLAVTTS-DNGIK 657 (915)
Q Consensus 586 ~-----~~~~v~~~~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~i~~s~~~~~l~s~~~-dg~i~ 657 (915)
. .......+.+++++++++... .++.+.+|++........... ......+.+++|+|||+++++++. ++.|.
T Consensus 222 ~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~ 301 (333)
T d1ri6a_ 222 MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHIS 301 (333)
T ss_dssp SCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEE
T ss_pred EECCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEE
T ss_conf 30687765531268995156720550456882787887399978999999678997628999079899999988999399
Q ss_pred EEEC--CCC
Q ss_conf 9986--998
Q 002494 658 ILAN--SDG 664 (915)
Q Consensus 658 iwd~--~~~ 664 (915)
+|++ .+|
T Consensus 302 v~~id~~tG 310 (333)
T d1ri6a_ 302 VYEIVGEQG 310 (333)
T ss_dssp EEEEETTTT
T ss_pred EEEEECCCC
T ss_conf 999979999
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=2.9e-18 Score=131.20 Aligned_cols=27 Identities=11% Similarity=0.418 Sum_probs=12.1
Q ss_pred CEEEEEEECCCCEEEEEC--CCEEEEEEC
Q ss_conf 412999712997599851--992599661
Q 002494 842 SAACIALSKNDSYVMSAS--GGKVSLFNM 868 (915)
Q Consensus 842 ~i~~l~~S~dg~~L~s~s--d~~i~iw~l 868 (915)
.+++++|||||++|++++ ++.|++|++
T Consensus 277 ~p~~~a~spDGk~l~va~~~~~~v~v~~i 305 (333)
T d1ri6a_ 277 QPRGFNVDHSGKYLIAAGQKSHHISVYEI 305 (333)
T ss_dssp SCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred CEEEEEEECCCCEEEEEECCCCEEEEEEE
T ss_conf 76289990798999999889993999999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=5.6e-19 Score=135.89 Aligned_cols=247 Identities=15% Similarity=0.089 Sum_probs=96.5
Q ss_pred EEEECCCCCEEEEEE----------CCCEEEEEEECCCCCEEEEEEEECC----CCCEEEEEEECCCCEEEEEEEECCCC
Q ss_conf 999958999899998----------8985999990489832334775334----57766899916999079999918991
Q 002494 413 RCVWGPDGLMLGVAF----------SKHIVHLYTYNPTGELRQHLEIDAH----VGGVNDIAFAHPNKQLCIVTCGDDKM 478 (915)
Q Consensus 413 ~i~~spd~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~h----~~~v~~i~~s~~~~~~~l~s~~~d~~ 478 (915)
.++|||||++|++++ .++.|.+||..+++..........+ ......+.|++++..++++..+.+..
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 130 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 130 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred CEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCE
T ss_conf 56994899999999677764201589998999999999798898058864031179873499933887157732798820
Q ss_pred EEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEEC------CCCCCEEEEEECCC
Q ss_conf 999996799067896188998789972037994199999679949999658998236850------89991799999799
Q 002494 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD------APGNWCTMMAYSAD 552 (915)
Q Consensus 479 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~i~~i~~sp~ 552 (915)
+.+|+..+++.+..+..+.... ... ... ...+..+.|+....+............ .+...+....+.++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~-~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (355)
T d2bbkh_ 131 VGVVDLEGKAFKRMLDVPDCYH-IFP---TAP-DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK 205 (355)
T ss_dssp EEEEETTTTEEEEEEECCSEEE-EEE---EET-TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT
T ss_pred EEEEECCCCCEEEEEECCCCCE-EEE---CCC-CCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCEEEECCCCCC
T ss_conf 4543057883766770587404-730---699-63699938999899983478737999624333000110610215389
Q ss_pred CCEEEEEEECCCCCCEEEEEECCCCEEEEE--ECCCCC---------CCEEEEEECCCCCEEEEEECC----------CC
Q ss_conf 998999963379983399997899926899--527778---------744799985999999999689----------91
Q 002494 553 GTRLFSCGTSKEGESHLVEWNESEGAIKRT--YSGFRK---------RSLGVVQFDTTRNRFLAAGDE----------FQ 611 (915)
Q Consensus 553 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~~~~~---------~~v~~~~~sp~~~~l~~~~~d----------g~ 611 (915)
+..++.++. ++.+++|+...+..... ...+.. .....+++++++..++....+ ..
T Consensus 206 ~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 281 (355)
T d2bbkh_ 206 AGRLVWPTY----TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF 281 (355)
T ss_dssp TTEEEEEBT----TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEE
T ss_pred CCEEEEECC----CCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCE
T ss_conf 973887469----9829999658990799844578441268543303510899980799767887406871265179975
Q ss_pred EEEEECCCCCEEEEECCCCCCCCCCEEEECCCCC--EEEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf 9999699991479971799999835499959999--999995899599998699852042202
Q 002494 612 IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVTTSDNGIKILANSDGVRLLRMLE 672 (915)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 672 (915)
|.+||..+++.+..+.... .+.+++|+|||+ ++++++.|+.|++||..++ +.++.+.
T Consensus 282 v~v~d~~t~~~~~~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg-~~~~~i~ 340 (355)
T d2bbkh_ 282 VVVLDAKTGERLAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVN 340 (355)
T ss_dssp EEEEETTTCCEEEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEEC
T ss_pred EEEEECCCCCEEEEECCCC---CEEEEEECCCCCEEEEEEECCCCEEEEEECCCC-CEEEEEE
T ss_conf 9998678884989966899---877999928999699999789998999999999-8999992
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=3e-18 Score=131.18 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=15.2
Q ss_pred CCEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 354999599999999958995999986998
Q 002494 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 635 v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
+....+.+++..++.++.++.+++|+...+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 226 (355)
T d2bbkh_ 197 INHPAYSQKAGRLVWPTYTGKIHQIDLSSG 226 (355)
T ss_dssp CSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred EEECCCCCCCCEEEEECCCCEEEEEECCCC
T ss_conf 610215389973887469982999965899
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.80 E-value=7.9e-16 Score=115.33 Aligned_cols=398 Identities=11% Similarity=0.058 Sum_probs=203.6
Q ss_pred EEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-
Q ss_conf 9999917999399999477909999869984002466056532667632101014777548499999589998999988-
Q 002494 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS- 428 (915)
Q Consensus 350 ~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s~~~- 428 (915)
..+.|.++++ +++ ..++.+.+||+.+++.... .....+..+...|.++.|||||++|++++.
T Consensus 20 ~~~~W~~d~~-~~~--~~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~ 82 (470)
T d2bgra1 20 YSLRWISDHE-YLY--KQENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNY 82 (470)
T ss_dssp CCCEECSSSE-EEE--ESSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEE
T ss_pred CCCEECCCCE-EEE--ECCCCEEEEECCCCCEEEE--------------ECHHHHHHCCCCCCEEEECCCCCEEEEEECC
T ss_conf 5789689997-999--7599499998899978999--------------7015644316765405998988979999777
Q ss_pred --------CCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCE
Q ss_conf --------985999990489832334775334577668999169990799999189919999967990678961889987
Q 002494 429 --------KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (915)
Q Consensus 429 --------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 500 (915)
++.+.+||+.+++. . .+..+...+..+.|||||+. ++.. .++.+++|+..+++.......+...+
T Consensus 83 ~~~~r~s~~~~~~l~d~~~~~~-~---~l~~~~~~~~~~~~SPDG~~--ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~ 155 (470)
T d2bgra1 83 VKQWRHSYTASYDIYDLNKRQL-I---TEERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRITWTGKEDI 155 (470)
T ss_dssp EECSSSCEEEEEEEEETTTTEE-C---CSSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEECCSCCBTTT
T ss_pred CCEEEECCCCEEEEEECCCCCC-C---CCCCCCCCCCCCCCCCCCCE--EEEE-ECCCCEEEECCCCCEEEEEECCCCCC
T ss_conf 1000104673499998988851-3---12468742310101467641--3575-14641379889994653210147774
Q ss_pred EEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEE
Q ss_conf 89972037994199999679949999658998236850899917999997999989999633799833999978999268
Q 002494 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (915)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (915)
+..+..| |... .........+.|||||++++....+......+.+.......
T Consensus 156 -------------~~~g~~d-----~~~~--------~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~-- 207 (470)
T d2bgra1 156 -------------IYNGITD-----WVYE--------EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES-- 207 (470)
T ss_dssp -------------EEESBCC-----HHHH--------HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT--
T ss_pred -------------CCCCCCC-----EEEE--------EEECCCCCCCEECCCCCCCCEEEECCCCCCEEEEEEECCCC--
T ss_conf -------------0535432-----0112--------10047765307999987220268637767069987660477--
Q ss_pred EEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECC---------CCCCCCCCEEEECCCCCEEEEEE
Q ss_conf 995277787447999859999999996899199996999914799717---------99999835499959999999995
Q 002494 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA---------DGGLPASPRLRFNKEGSLLAVTT 651 (915)
Q Consensus 581 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~v~~i~~s~~~~~l~s~~ 651 (915)
.... ......+...+. ...+..+.+|++..+........ ......+..+.|.+++..++...
T Consensus 208 ----~~~~-~~~~~~~~~~g~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 278 (470)
T d2bgra1 208 ----LQYP-KTVRVPYPKAGA----VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWL 278 (470)
T ss_dssp ----CSSC-EEEEEECCBTTS----CCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEE
T ss_pred ----CCCC-EEEEECCCCCCC----CCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEE
T ss_conf ----7887-135403665454----6886257999988861455203322478633478986677888768783347873
Q ss_pred -CCC---CEEEE--ECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -899---59999--869985204220278776102679988789883013215676432247964588999997323334
Q 002494 652 -SDN---GIKIL--ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 725 (915)
Q Consensus 652 -~dg---~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 725 (915)
..+ .+.++ +..++ .............. ...|- ...
T Consensus 279 ~r~~~~~~~~~~~~d~~tg-~~~~~~~~~~~~~~------------------------------~~~~i--------~~~ 319 (470)
T d2bgra1 279 RRIQNYSVMDICDYDESSG-RWNCLVARQHIEMS------------------------------TTGWV--------GRF 319 (470)
T ss_dssp ESSTTEEEEEEEEEETTTT-EEEECGGGCEEEEC------------------------------SSSCS--------SSS
T ss_pred ECCCCCEEEEEEEECCCCC-CEEEEEEEEEEEEE------------------------------CCCEE--------ECC
T ss_conf 0468815999999618889-47899987514662------------------------------14335--------313
Q ss_pred CCCCCEECCCC--CEEECCCC-CCEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEE-EEEECCC----EEE
Q ss_conf 67784110488--60210378-9446762489899663358641786688856999993188528-7831255----158
Q 002494 726 GTIDGSRLVDV--KPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSL-LALASNA----VHK 797 (915)
Q Consensus 726 ~~~~~~~s~dg--~~la~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l-~~~~~dg----~v~ 797 (915)
......+++++ ..+..+.. +...||.+... +.... .+.. +...|..+ ++++++.+ ++++.++ .-.
T Consensus 320 ~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~--g~~~~--~lt~--g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ 392 (470)
T d2bgra1 320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQID--KKDCT--FITK--GTWEVIGI-EALTSDYLYYISNEYKGMPGGRN 392 (470)
T ss_dssp SCCCCEECTTSSEEEEEEECTTSCEEEEEEETT--CSCCE--ESCC--SSSCEEEE-EEECSSEEEEEESCGGGCTTCBE
T ss_pred CCCCCEEEECCCCCEEEEECCCCCCEEEEEECC--CCCEE--EECC--CCEEEEEE-EEECCCEEEEEEECCCCCCCEEE
T ss_conf 577724542378847987436757645999526--87304--5116--98048787-89779999999956899835179
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCEEEEEEECCCCEEE-EEC---CCEEEEEECCCCCC
Q ss_conf 76525556799997111003223149998730014899998887412999712997599-851---99259966158999
Q 002494 798 LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM-SAS---GGKVSLFNMMTFKP 873 (915)
Q Consensus 798 iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~i~~l~~S~dg~~L~-s~s---d~~i~iw~l~t~k~ 873 (915)
||.++. +......++...+.+ | ...+.+++|||||+|++ +++ .-.+.+|+..++|.
T Consensus 393 ly~v~~-----------------~g~~~~~~lt~~~~~--~-~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~ 452 (470)
T d2bgra1 393 LYKIQL-----------------SDYTKVTCLSCELNP--E-RCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKG 452 (470)
T ss_dssp EEEEET-----------------TCTTCEEESSTTTST--T-TBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred EEEEEC-----------------CCCCCEEEECCCCCC--C-CCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCE
T ss_conf 999988-----------------899860570354358--8-89879999998999999983289998199999899989
Q ss_pred C
Q ss_conf 9
Q 002494 874 P 874 (915)
Q Consensus 874 ~ 874 (915)
.
T Consensus 453 v 453 (470)
T d2bgra1 453 L 453 (470)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.79 E-value=2.1e-16 Score=119.13 Aligned_cols=130 Identities=10% Similarity=0.140 Sum_probs=85.2
Q ss_pred CCCCCCCEEEEEC------CCCCEEEEEECCCCCEEEEEE--------ECCCCEEEEECCCCCEECCCCEEEEECCCCCC
Q ss_conf 5887642789850------799779999917999399999--------47790999986998400246605653266763
Q 002494 332 QDDLTKTVVRTLN------QGSNVMSMDFHPQQQTILLVG--------TNVGDISLWEVGSRERLAHKPFKVWDISAASM 397 (915)
Q Consensus 332 ~d~~~~~~~~~l~------h~~~V~~i~fspd~~~ll~~g--------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 397 (915)
++..+++....+. |...|.++.|||||+++++.. +.++.+.+||+.+++...
T Consensus 41 ~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~-------------- 106 (470)
T d2bgra1 41 FNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-------------- 106 (470)
T ss_dssp EETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC--------------
T ss_pred EECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCCCCCC--------------
T ss_conf 988999789997015644316765405998988979999777100010467349999898885131--------------
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEEE------EEC---------CCCCEEEEEEE
Q ss_conf 210101477754849999958999899998898599999048983233477------533---------45776689991
Q 002494 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLE------IDA---------HVGGVNDIAFA 462 (915)
Q Consensus 398 ~~~~~~~~~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~---------h~~~v~~i~~s 462 (915)
+..+...+..+.|||||+.+|... ++.+++|+..++...+.... +.+ ..+....+.|+
T Consensus 107 ------l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wS 179 (470)
T d2bgra1 107 ------EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS 179 (470)
T ss_dssp ------SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC
T ss_pred ------CCCCCCCCCCCCCCCCCCEEEEEE-CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEC
T ss_conf ------246874231010146764135751-4641379889994653210147774053543201121004776530799
Q ss_pred CCCCEEEEEEEECC-CCEEEEEC
Q ss_conf 69990799999189-91999996
Q 002494 463 HPNKQLCIVTCGDD-KMIKVWDV 484 (915)
Q Consensus 463 ~~~~~~~l~s~~~d-~~i~iwd~ 484 (915)
|||+ .++....| ..+..|.+
T Consensus 180 PDGk--~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 180 PNGT--FLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp TTSS--EEEEEEEECTTCCEEEE
T ss_pred CCCC--CCCEEEECCCCCCEEEE
T ss_conf 9987--22026863776706998
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=2.4e-15 Score=112.18 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=26.4
Q ss_pred CEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCC--EEEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf 19999699991479971799999835499959999--999995899599998699852042202
Q 002494 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVTTSDNGIKILANSDGVRLLRMLE 672 (915)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 672 (915)
.+.+||..+++.+..+.... .+.+++|+|||+ +++++..|+.|++||..++ +.++.+.
T Consensus 295 ~v~v~D~~t~~~~~~~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg-k~~~~i~ 354 (368)
T d1mdah_ 295 NTSSVTASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp EEEEEESSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred EEEEEECCCCCEEEEECCCC---CEEEEEECCCCCEEEEEEECCCCEEEEEECCCC-CEEEEEE
T ss_conf 49999899994868955899---651799998999899999489996999989999-7999987
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=2.9e-15 Score=111.66 Aligned_cols=59 Identities=8% Similarity=0.007 Sum_probs=23.8
Q ss_pred EEEEEECCCCEEEEEECCCCCCCEEEEEECCCCC-EE-EEEECCCCEEEEECCCCCEEEEECC
Q ss_conf 3999978999268995277787447999859999-99-9996899199996999914799717
Q 002494 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RF-LAAGDEFQIKFWDMDNMNMLTTVDA 628 (915)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (915)
.+.+||..+++.+..+.... .+..++|+|||+ ++ +++..++.|++||..+++.+..+..
T Consensus 295 ~v~v~D~~t~~~~~~~~~~~--~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 295 NTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred EEEEEECCCCCEEEEECCCC--CEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf 49999899994868955899--65179999899989999948999699998999979999879
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.71 E-value=4.3e-15 Score=110.47 Aligned_cols=262 Identities=9% Similarity=-0.012 Sum_probs=120.9
Q ss_pred CCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEE
Q ss_conf 99399999477909999869984002466056532667632101014777548499999589998999988985999990
Q 002494 358 QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY 437 (915)
Q Consensus 358 ~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~ 437 (915)
.-+.+++|+.+|.|.+|++.+++.+....+ |+|++... .+..+.+..++.
T Consensus 10 e~y~f~Sgg~sG~V~V~dlpS~r~l~~IpV----------------------------fspd~~~g-~g~~~es~~vl~- 59 (441)
T d1qnia2 10 EYYGFWSGGHQGEVRVLGVPSMRELMRIPV----------------------------FNVDSATG-WGITNESKEILG- 59 (441)
T ss_dssp SEEEEEECBTTCCEEEEEETTTEEEEEECS----------------------------SSBCTTTC-TTTSHHHHHHHC-
T ss_pred CEEEEEECCCCCCEEEEECCCCCEEEEEEE----------------------------ECCCCCEE-EEECCCCCEEEE-
T ss_conf 779999688777489996789807999976----------------------------75789879-998886504783-
Q ss_pred CCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEEC-CCCCCEEEEEEECCCCCCEEEE
Q ss_conf 489832334775334577668999169990799999189919999967990678961-8899878997203799419999
Q 002494 438 NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFS 516 (915)
Q Consensus 438 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s 516 (915)
...... ....|.........+|||+. ++++...+..|.++|+.++++...+. ........++|++++.-.+++.
T Consensus 60 -~~~~~~---~gd~hhP~~s~t~gtpDGr~-lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~ 134 (441)
T d1qnia2 60 -GDQQYL---NGDCHHPHISMTDGRYDGKY-LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFC 134 (441)
T ss_dssp -SSSCCS---CCCBCCCEEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEE
T ss_pred -CCCCCC---CCCCCCCCCCEECCCCCCCE-EEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEE
T ss_conf -133225---67556777221032688888-9997389997999988778475579567887864348705699899995
Q ss_pred EECCC-----------------EEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEE
Q ss_conf 96799-----------------4999965899823685089991799999799998999963379983399997899926
Q 002494 517 TAIDG-----------------KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (915)
Q Consensus 517 ~~~dg-----------------~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 579 (915)
.+.+. .+..+|..+.......... .....+.++|+|+++++.+.+.+ .+..++..+...
T Consensus 135 ~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse---~~~~id~~t~~~ 210 (441)
T d1qnia2 135 NAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSE---RAVDLAGTMRND 210 (441)
T ss_dssp EECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTT---CCSSHHHHTCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECC-CCCCCEEECCCCCEEEEEECCCC---CEEEEECCCCCE
T ss_conf 66775443676630014555323886637556064787369-98654698799998999851787---318985157121
Q ss_pred EEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEE-EECCCCEEE
Q ss_conf 8995277787447999859999999996899199996999914799717999998354999599999999-958995999
Q 002494 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAV-TTSDNGIKI 658 (915)
Q Consensus 580 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s-~~~dg~i~i 658 (915)
...+.... ......++|+|+++.. +.++.+.+++....+.+..+.... ....+.++|||+++++ +..++++.+
T Consensus 211 ~d~i~v~n--~p~~~~~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPvgk---sPhGv~vSPDGkyl~~~~~~~~tvsv 284 (441)
T d1qnia2 211 RDWVVVFN--VERIAAAVKAGNFKTI-GDSKVPVVDGRGESEFTRYIPVPK---NPHGLNTSPDGKYFIANGKLSPTVSV 284 (441)
T ss_dssp BCEEEEEE--HHHHHHHHHTTCCBCC-TTCCCCEEECSSSCSSEEEECCBS---SCCCEEECTTSCEEEEECTTSSBEEE
T ss_pred EEEEEECC--CCCEEEEECCCCEEEE-CCCCCEEEECCCCCCEEEEEECCC---CCCCCEECCCCCEEEEECCCCCCEEE
T ss_conf 78999688--5110799669999996-999828998036870689971798---86672689998789990775993899
Q ss_pred EECCCC
Q ss_conf 986998
Q 002494 659 LANSDG 664 (915)
Q Consensus 659 wd~~~~ 664 (915)
||+.+.
T Consensus 285 ~d~~k~ 290 (441)
T d1qnia2 285 IAIDKL 290 (441)
T ss_dssp EEGGGH
T ss_pred EEEEHH
T ss_conf 983224
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.62 E-value=5.3e-15 Score=109.89 Aligned_cols=290 Identities=10% Similarity=0.032 Sum_probs=136.5
Q ss_pred EEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCC--EEEEEECCC-----------
Q ss_conf 7999997999989999633799833999978999268995277787447999859999--999996899-----------
Q 002494 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN--RFLAAGDEF----------- 610 (915)
Q Consensus 544 i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~dg----------- 610 (915)
......+|||+++++... .+..|.++|+.+++....+..........++|+|+++ +++..+++.
T Consensus 74 ~s~t~gtpDGr~lfV~d~---~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~ 150 (441)
T d1qnia2 74 ISMTDGRYDGKYLFINDK---ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFS 150 (441)
T ss_dssp EEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCC
T ss_pred CCEECCCCCCCEEEEECC---CCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 221032688888999738---99979999887784755795678878643487056998999956677544367663001
Q ss_pred ------CEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCC-CEEEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf ------19999699991479971799999835499959999999995899-59999869985204220278776102679
Q 002494 611 ------QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN-GIKILANSDGVRLLRMLEGRAMDKNRCPS 683 (915)
Q Consensus 611 ------~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 683 (915)
.+..+|..+.+...++.... ....+.++|+|+++++.+.+. .+..++..+. .....+...... .....
T Consensus 151 ~~~~~~~~~~iD~~t~~v~~qI~v~~---~p~~v~~spdGk~a~vt~~nse~~~~id~~t~-~~~d~i~v~n~p-~~~~~ 225 (441)
T d1qnia2 151 LDNSYTMFTAIDAETMDVAWQVIVDG---NLDNTDADYTGKYATSTCYNSERAVDLAGTMR-NDRDWVVVFNVE-RIAAA 225 (441)
T ss_dssp GGGEEEEEEEEETTTCSEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC-SSBCEEEEEEHH-HHHHH
T ss_pred CCCCCCEEEEECCCCCEEEEEEECCC---CCCCEEECCCCCEEEEEECCCCCEEEEECCCC-CEEEEEEECCCC-CEEEE
T ss_conf 45553238866375560647873699---86546987999989998517873189851571-217899968851-10799
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC-C-CCCCCC-CCCCEECCCCCEEECCCC--CCEEEEECCCCC--
Q ss_conf 988789883013215676432247964588999997-3-233346-778411048860210378--944676248989--
Q 002494 684 EPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA-V-SISSLG-TIDGSRLVDVKPRVAEDV--DKIKSWRIPDIS-- 756 (915)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-~~~~~~-~~~~~~s~dg~~la~~~~--~~i~iw~~~~~~-- 756 (915)
.++++.....++ ..+.++...... . ....=. ...+.++|||+++++++. ++|.+|++....
T Consensus 226 ------~~dGk~~~v~~~------~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~ 293 (441)
T d1qnia2 226 ------VKAGNFKTIGDS------KVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL 293 (441)
T ss_dssp ------HHTTCCBCCTTC------CCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHH
T ss_pred ------ECCCCEEEECCC------CCEEEECCCCCCEEEEEECCCCCCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHH
T ss_conf ------669999996999------82899803687068997179886672689998789990775993899983224457
Q ss_pred -----CCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEC
Q ss_conf -----966335864178668885699999318852878312551587652555679999711100322314999873001
Q 002494 757 -----DPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTN 831 (915)
Q Consensus 757 -----~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~ 831 (915)
....+.... +. ..-.....+|+++|....+.+-|+.|..|++... ++.|.-.....+..
T Consensus 294 ~~~~~~~~~~~~~~-~~--~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~-------------~~~~~~~~~~~v~~ 357 (441)
T d1qnia2 294 FEDKIELRDTIVAE-PE--LGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADA-------------IKHYNGDRVNYIRQ 357 (441)
T ss_dssp TTTSSCGGGGEEEC-CB--CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH-------------HHHHTTCCCCCEEE
T ss_pred HHCCCCCCEEEEEE-CC--CCCCCCCCEECCCCEEEECCCCCCEEEEECCCHH-------------HHHHCCCCCCEEEE
T ss_conf 52568842479960-14--5547665226578559985244316897235422-------------13322677765686
Q ss_pred C-----CCCCCCCCCCEEEEEEECCCCEEEEE---C-CCE----------EEEEECCCCC
Q ss_conf 4-----89999888741299971299759985---1-992----------5996615899
Q 002494 832 D-----INESKPTEESAACIALSKNDSYVMSA---S-GGK----------VSLFNMMTFK 872 (915)
Q Consensus 832 ~-----~~~~~h~~~~i~~l~~S~dg~~L~s~---s-d~~----------i~iw~l~t~k 872 (915)
. ..| | ...+.+.+++||||||+++ | |.. -.+.|+...|
T Consensus 358 ~~~v~y~~G--H-~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~ 414 (441)
T d1qnia2 358 KLDVQYQPG--H-NHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEE 414 (441)
T ss_dssp EEECSSCEE--E-EEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSS
T ss_pred CCCCCCCCC--C-CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCE
T ss_conf 453266898--7-75245422389884899657444255767888987644269815975
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.3e-10 Score=78.53 Aligned_cols=391 Identities=10% Similarity=0.066 Sum_probs=179.7
Q ss_pred EECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC----
Q ss_conf 9917999399999477909999869984002466056532667632101014777548499999589998999988----
Q 002494 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS---- 428 (915)
Q Consensus 353 ~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s~~~---- 428 (915)
.|.+++.+ +.. ..+|.+.+|++.+++... +.+. ..-....+....||||+++++....
T Consensus 23 ~W~~~~~~-~~~-~~~g~i~~~~~~~~~~~~-----l~~~-----------~~~~~~~~~~~~~SpD~~~vl~~~~~~~~ 84 (465)
T d1xfda1 23 KWISDTEF-IYR-EQKGTVRLWNVETNTSTV-----LIEG-----------KKIESLRAIRYEISPDREYALFSYNVEPI 84 (465)
T ss_dssp CBSSSSCB-CCC-CSSSCEEEBCGGGCCCEE-----EECT-----------TTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred EEECCCCE-EEE-ECCCCEEEEECCCCCEEE-----EECC-----------CCCCCCCCCEEEECCCCCEEEEEECCCCE
T ss_conf 89179848-999-289969999878998899-----8727-----------64444553213898988869999845100
Q ss_pred -----CCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEE
Q ss_conf -----985999990489832334775334577668999169990799999189919999967990678961889987899
Q 002494 429 -----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (915)
Q Consensus 429 -----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i 503 (915)
.+.+.++|+.++.... +.........+....|||||+. ++-.. ++.+.+.+...+..++......
T Consensus 85 ~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~~~~~~~~~~~lt~~g~------ 154 (465)
T d1xfda1 85 YQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYYCAHVGKQAIRVVSTGK------ 154 (465)
T ss_dssp SSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEEESSSSSCCEEEECCCB------
T ss_pred EEEECCCCEEEEECCCCCEEE-CCCCCCCCCCCCEEEECCCCCE--EEEEE-CCEEEEEECCCCCEEEEECCCC------
T ss_conf 476033528999856884564-1576677643110024267856--99996-1329999548996589711267------
Q ss_pred EEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEE
Q ss_conf 72037994199999679949999658998236850899917999997999989999633799833999978999268995
Q 002494 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (915)
Q Consensus 504 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (915)
...+..|-.| |-.. ......-..+.|||||++|+....+.. .+..+.+...
T Consensus 155 -------~~~i~nG~~d-----~vye--------ee~~~~~~a~~WSPDgk~iaf~~~D~s---~V~~~~~~~~------ 205 (465)
T d1xfda1 155 -------EGVIYNGLSD-----WLYE--------EEILKTHIAHWWSPDGTRLAYAAINDS---RVPIMELPTY------ 205 (465)
T ss_dssp -------TTTEEEEECC-----HHHH--------HTTSSSSEEEEECTTSSEEEEEEEECT---TSCEEEECCC------
T ss_pred -------CCEEECCCCC-----HHHH--------HHHCCCCCEEEECCCCCEEEEEEECCC---CCCEEECCCC------
T ss_conf -------6604436643-----1001--------230366434897798986899995366---6614641234------
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCC----CCCCCCEEEECCCCCEEEEEEC----CCC
Q ss_conf 27778744799985999999999689919999699991479971799----9998354999599999999958----995
Q 002494 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG----GLPASPRLRFNKEGSLLAVTTS----DNG 655 (915)
Q Consensus 584 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~i~~s~~~~~l~s~~~----dg~ 655 (915)
.+.....+..+.+..-|..- ....+.++|+.++.......... ....+..+.|++++++++.... ...
T Consensus 206 ~~~~~p~~~~~~Yp~~G~~n----p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~ 281 (465)
T d1xfda1 206 TGSIYPTVKPYHYPKAGSEN----PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSI 281 (465)
T ss_dssp SSSSSCCCEEEECCBTTSCC----CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEE
T ss_pred CCCCCCEEEEEECCCCCCCC----CCEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCE
T ss_conf 45444313345302568889----72137998368981789995257676666304566875799389999741003013
Q ss_pred EEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 99998699852042202787761026799887898830132156764322479645889999973233346778411048
Q 002494 656 IKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 735 (915)
Q Consensus 656 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~d 735 (915)
+.++|..++ ++...+...... |- ......+.+++|
T Consensus 282 i~~~d~~tg-~~~~~~~e~~~~-----------------------------------wv---------~~~~~~p~~~~d 316 (465)
T d1xfda1 282 LTLCDATTG-VCTKKHEDESEA-----------------------------------WL---------HRQNEEPVFSKD 316 (465)
T ss_dssp EEEEETTTC-CEEEEEEEECSS-----------------------------------CC---------CCCCCCCEECTT
T ss_pred EEEECCCCC-CEEEEEEECCCC-----------------------------------EE---------ECCCCCEEECCC
T ss_conf 799707999-278778972785-----------------------------------17---------356786057468
Q ss_pred CCEEEC---CCC---CCEEEEECCC---CCCCCCEEEEECCCCCCCCCEEE-EEEECCCCEE-EEEECC--CEEEEEECC
Q ss_conf 860210---378---9446762489---89966335864178668885699-9993188528-783125--515876525
Q 002494 736 VKPRVA---EDV---DKIKSWRIPD---ISDPSQIKALRLPDSIAASKVVR-LIYTNSGLSL-LALASN--AVHKLWKWQ 802 (915)
Q Consensus 736 g~~la~---~~~---~~i~iw~~~~---~~~~~~~~~~~~~~~~h~~~I~~-l~~s~d~~~l-~~~~~d--g~v~iW~l~ 802 (915)
|+.++. ... +.+....+.. ...+.... .+.. ..-.|.. +.|+.+++.+ +++..+ +.-.+|.++
T Consensus 317 g~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~--~LT~--G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~ 392 (465)
T d1xfda1 317 GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ--SITS--GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (465)
T ss_dssp SCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC--BSCC--SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred CCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCEEE--EECC--CCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEE
T ss_conf 980577776543166716899831566667886269--8226--992199778983899999999968999826899997
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCEEEEEEECCCCEEEEE-C-C--CEEEEEECCCCCCC
Q ss_conf 55679999711100322314999873001489999888741299971299759985-1-9--92599661589999
Q 002494 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA-S-G--GKVSLFNMMTFKPP 874 (915)
Q Consensus 803 ~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~~~~h~~~~i~~l~~S~dg~~L~s~-s-d--~~i~iw~l~t~k~~ 874 (915)
.. ......++.+.+. . ......+.||||+++++.. + - -.+.+++..++|..
T Consensus 393 l~-----------------g~~~~~~lt~~~~---~-~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~ 447 (465)
T d1xfda1 393 TV-----------------GNFNRQCLSCDLV---E-NCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKM 447 (465)
T ss_dssp SS-----------------TTCCCBCSSTTSS---S-SCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEE
T ss_pred CC-----------------CCCCCEEECCCCC---C-CCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEE
T ss_conf 78-----------------9986055314467---8-898799999999999999800699984999999999799
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=9e-10 Score=75.72 Aligned_cols=222 Identities=9% Similarity=0.074 Sum_probs=101.3
Q ss_pred CCCCEEEEEECCCCCEEEEEECCC---EEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEE
Q ss_conf 754849999958999899998898---59999904898323347753345776689991699907999991899199999
Q 002494 407 AAISVNRCVWGPDGLMLGVAFSKH---IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (915)
Q Consensus 407 h~~~v~~i~~spd~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd 483 (915)
+...+...+|||||+.||...... .+.+.+..++... .+..+........|+|++.. ++.....++...++.
T Consensus 37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~-i~~~~~~~~~~~~~~ 111 (269)
T d2hqsa1 37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYV 111 (269)
T ss_dssp ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSSE-EEEEECTTSSCEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEE----EEEEEECCCCCCEECCCCCE-EEEEEECCCCCCEEE
T ss_conf 8984260388789998999981526751344311367506----77642024543024488986-467640278641000
Q ss_pred CCC-CEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCE--EEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 679-906789618899878997203799419999967994--99996589982368508999179999979999899996
Q 002494 484 VVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (915)
Q Consensus 484 ~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~ 560 (915)
... ..................+.+... ..+++...++. +...++..... ..............|+|+++.++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~ 189 (269)
T d2hqsa1 112 MDLASGQIRQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVS 189 (269)
T ss_dssp EETTTCCEEECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCC-CCEECCCCCCCCEEEEEECCCCCC-EEEECCCCCCCCCCCCCCCCEEEEEE
T ss_conf 0222122000010144211454345544-330000126874386542133100-01000122223432234543057786
Q ss_pred ECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEEC---CCCEEEEECCCCCEEEEECCCCCCCCCCE
Q ss_conf 337998339999789992689952777874479998599999999968---99199996999914799717999998354
Q 002494 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (915)
Q Consensus 561 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (915)
.. .+...+.+.+...+.. .... ... ......|+|||+.|+..+. ...++++++..+... .+....+ .+..
T Consensus 190 ~~-~~~~~i~~~~~~~~~~-~~~~-~~~-~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~-~lt~~~g--~~~~ 262 (269)
T d2hqsa1 190 SN-GGQQHIAKQDLATGGV-QVLS-STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA-RLPATDG--QVKF 262 (269)
T ss_dssp EC-SSCEEEEEEETTTCCE-EECC-CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE-ECCCSSS--EEEE
T ss_pred EC-CCCEEEEEEECCCCCC-EEEE-CCC-CCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCEE-EEECCCC--CEEE
T ss_conf 05-8801256760356440-5850-686-5445589899999999981799847999999999779-9857998--5883
Q ss_pred EEECC
Q ss_conf 99959
Q 002494 638 LRFNK 642 (915)
Q Consensus 638 i~~s~ 642 (915)
.+|+|
T Consensus 263 p~WSP 267 (269)
T d2hqsa1 263 PAWSP 267 (269)
T ss_dssp EEECC
T ss_pred EEECC
T ss_conf 78289
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=2.3e-09 Score=73.08 Aligned_cols=241 Identities=10% Similarity=0.048 Sum_probs=124.6
Q ss_pred EECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCC--CEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 5258876427898507997799999179993999994779--09999869984002466056532667632101014777
Q 002494 330 YSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (915)
Q Consensus 330 ~~~d~~~~~~~~~l~h~~~V~~i~fspd~~~ll~~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (915)
|..|...+.....+.+...+...+|||||++++++....+ .+.+.+..++.... +..+
T Consensus 22 ~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~ 81 (269)
T d2hqsa1 22 RVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASF 81 (269)
T ss_dssp EEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EECC
T ss_pred EEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEE--------------------EEEE
T ss_conf 99928999767986589842603887899989999815267513443113675067--------------------7642
Q ss_pred CCCEEEEEECCCCCEEEEEEC-CCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCC--EEEEEC
Q ss_conf 548499999589998999988-98599999048983233477533457766899916999079999918991--999996
Q 002494 408 AISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--IKVWDV 484 (915)
Q Consensus 408 ~~~v~~i~~spd~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~--i~iwd~ 484 (915)
........|+|+|+.++.... ++...++.......... .............+++++.. .+++...++. +...++
T Consensus 82 ~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~ 158 (269)
T d2hqsa1 82 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR--QVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNI 158 (269)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--ECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEET
T ss_pred ECCCCCCEECCCCCEEEEEEECCCCCCEEECCCCCCCCE--EEEECCCCCCCCCCCCCCCC-CEECCCCCCCCEEEEEEC
T ss_conf 024543024488986467640278641000022212200--00101442114543455443-300001268743865421
Q ss_pred CCCEEEEEECCCCCCEEEEEEECCCCCCEEEEE-ECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 799067896188998789972037994199999-6799499996589982368508999179999979999899996337
Q 002494 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (915)
Q Consensus 485 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~ 563 (915)
..+.. ..+...........|++++ ..++.. ...+...+|......................|+|||+.|+..+..
T Consensus 159 ~~~~~-~~~~~~~~~~~~~~~spdg--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~- 234 (269)
T d2hqsa1 159 NGGAP-QRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ- 234 (269)
T ss_dssp TSSCC-EECCCSSSEEEEEEECTTS--SEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE-
T ss_pred CCCCC-EEEECCCCCCCCCCCCCCC--CEEEEEEECCCCEEEEEEECCCCCCEEEECCCCCCCEEECCCCCEEEEEECC-
T ss_conf 33100-0100012222343223454--3057786058801256760356440585068654455898999999999817-
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCC
Q ss_conf 998339999789992689952777874479998599
Q 002494 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (915)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~ 599 (915)
.+...++++++..+.. ..+....+ .+...+|+|-
T Consensus 235 ~~~~~l~~~~~dg~~~-~~lt~~~g-~~~~p~WSP~ 268 (269)
T d2hqsa1 235 GMGSVLNLVSTDGRFK-ARLPATDG-QVKFPAWSPY 268 (269)
T ss_dssp TTEEEEEEEETTSCCE-EECCCSSS-EEEEEEECCC
T ss_pred CCCCEEEEEECCCCCE-EEEECCCC-CEEEEEECCC
T ss_conf 9984799999999977-99857998-5883782898
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.47 E-value=2.4e-09 Score=73.00 Aligned_cols=252 Identities=12% Similarity=0.101 Sum_probs=133.8
Q ss_pred CCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 64278985079977999991799939999947790999986998400246605653266763210101477754849999
Q 002494 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (915)
Q Consensus 336 ~~~~~~~l~h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~ 415 (915)
+.+++..+.....+..++++|||+ ++++...++.|..|+....... +......+.+++
T Consensus 17 ~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~gla 74 (302)
T d2p4oa1 17 PAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSGLA 74 (302)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEEEE
T ss_pred CCCEEEECCCCCCCCCEEECCCCC-EEEEECCCCEEEEEECCCCEEE---------------------EECCCCCCCEEE
T ss_conf 620788888998847877999988-9999688998999908998899---------------------971799853689
Q ss_pred ECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECC
Q ss_conf 95899989999889859999904898323347753345776689991699907999991899199999679906789618
Q 002494 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (915)
Q Consensus 416 ~spd~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (915)
|++||+++++...++.+..++......................+.+.+++. ++++.+.++.+..++...+........
T Consensus 75 ~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~~ 152 (302)
T d2p4oa1 75 FTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLEH 152 (302)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCEEEEECCCCEEEEEEECCCCCCEEECCCCCCCCCCCEEEECCCCC--EEEECCCCCCCEEEECCCCCCEEEECC
T ss_conf 867788699832895378887101111012102357863221667715797--875035655410242168730367518
Q ss_pred CCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECC
Q ss_conf 89987899720379941999996799499996589982368508999179999979999899996337998339999789
Q 002494 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (915)
Q Consensus 496 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~ 575 (915)
..... ............+.++ +..++.+.. ..+.|+.++..
T Consensus 153 ~~~~~----------------------------------~~~~~~~~~~ngi~~~--~~~l~~~~~---~~~~i~~~~~~ 193 (302)
T d2p4oa1 153 PMLAR----------------------------------SNSESVFPAANGLKRF--GNFLYVSNT---EKMLLLRIPVD 193 (302)
T ss_dssp GGGSC----------------------------------SSTTCCSCSEEEEEEE--TTEEEEEET---TTTEEEEEEBC
T ss_pred CCCCE----------------------------------EECCCCCCCCCCCCCC--CCCEEEECC---CCCEEEECCCC
T ss_conf 86401----------------------------------4315763224320116--983044037---88769863443
Q ss_pred CCEEE---EEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEE---CCCCCEEEE
Q ss_conf 99268---995277787447999859999999996899199996999914799717999998354999---599999999
Q 002494 576 EGAIK---RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF---NKEGSLLAV 649 (915)
Q Consensus 576 ~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~---s~~~~~l~s 649 (915)
..... ..+.. .. ....++++++|+++++...++.|..++.. ++..............++++| ++|++.|++
T Consensus 194 ~~~~~~~~~~~~~-~~-~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyv 270 (302)
T d2p4oa1 194 STDKPGEPEIFVE-QT-NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYV 270 (302)
T ss_dssp TTSCBCCCEEEEE-SC-CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEE
T ss_pred CCCCCCCCCCCCC-CC-CCCCEEECCCCCEEEEECCCCCEEEECCC-CCEEEEEECCCCCCCCEEEEECCCCCCCCEEEE
T ss_conf 3332345310158-99-87523787999999997489918998789-978999963789888248997087887898999
Q ss_pred EECC
Q ss_conf 9589
Q 002494 650 TTSD 653 (915)
Q Consensus 650 ~~~d 653 (915)
++..
T Consensus 271 tt~~ 274 (302)
T d2p4oa1 271 VTNG 274 (302)
T ss_dssp EECT
T ss_pred ECCC
T ss_conf 9889
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.47 E-value=1.8e-10 Score=80.34 Aligned_cols=75 Identities=15% Similarity=0.054 Sum_probs=36.9
Q ss_pred CEEEEEECCCCCEEEEEEC-CCCEEEEECCCCC-EE--EEECCCCCCCCCCEEEECCCCCEEEEEE-CCCCEEEEECCCC
Q ss_conf 4479998599999999968-9919999699991-47--9971799999835499959999999995-8995999986998
Q 002494 590 SLGVVQFDTTRNRFLAAGD-EFQIKFWDMDNMN-ML--TTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (915)
Q Consensus 590 ~v~~~~~sp~~~~l~~~~~-dg~i~iwd~~~~~-~~--~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~dg~i~iwd~~~~ 664 (915)
.+.++.|+|+|++++++.. ...|.+|+..... .. ..............+.|+|+++++++.. .++.|.+|+...+
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCC
T ss_conf 11597888999989982079987999970688716652511112788740899988998669995158998999995598
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.41 E-value=4e-09 Score=71.49 Aligned_cols=212 Identities=10% Similarity=0.017 Sum_probs=106.6
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEE-CCCCEEEEECC
Q ss_conf 75484999995899989999889859999904898323347753345776689991699907999991-89919999967
Q 002494 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVV 485 (915)
Q Consensus 407 h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~-~d~~i~iwd~~ 485 (915)
....+..++++++++.|.++.. +.+..|.+.....+..... .........+.++++++..+++++. ..+.+..+.+.
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~-~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~ 115 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCCEEEECCCCCEEEEEEC-CCEEEEEEECCCCEEEEEE-ECCCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECC
T ss_conf 8999777999489899999938-9478999908997698764-1289986789987899879999932799789986745
Q ss_pred CC-EEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 99-06789618899878997203799419999967994999965899823685089991799999799998999963379
Q 002494 486 AG-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (915)
Q Consensus 486 ~~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~ 564 (915)
.. .... +.....++.+ ... ...........+.++.|+|+|++++++..
T Consensus 116 ~~~~~~~----------------------~~~~~~~~~~--~~~----~~~~~~q~~~h~h~v~~sPdG~~l~v~d~--- 164 (365)
T d1jofa_ 116 KFAGYGN----------------------VFSVSETGKL--EKN----VQNYEYQENTGIHGMVFDPTETYLYSADL--- 164 (365)
T ss_dssp SSCCEEE----------------------EEEECTTCCE--EEE----EEEEECCTTCCEEEEEECTTSSEEEEEET---
T ss_pred CCCCCCE----------------------EEEEEECCEE--CCC----CCCCCCCCCCCCEEEEECCCCCEEEEEEC---
T ss_conf 7887420----------------------6866403300--476----46755688981159788899998998207---
Q ss_pred CCCEEEEEECCC-CEEE--EEEC-CCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEE-----CCC-----
Q ss_conf 983399997899-9268--9952-77787447999859999999996-8991999969999147997-----179-----
Q 002494 565 GESHLVEWNESE-GAIK--RTYS-GFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTV-----DAD----- 629 (915)
Q Consensus 565 ~~~~i~iwd~~~-~~~~--~~~~-~~~~~~v~~~~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~-----~~~----- 629 (915)
+...|++|+... +... .... ...+...+.+.|+|+++++++.. .+++|.+|++...+..... ...
T Consensus 165 g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (365)
T d1jofa_ 165 TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP 244 (365)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred CCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCC
T ss_conf 99879999706887166525111127887408999889986699951589989999955987537787312402455655
Q ss_pred -------CCCCCCCEEEECCCCCEEEEEE
Q ss_conf -------9999835499959999999995
Q 002494 630 -------GGLPASPRLRFNKEGSLLAVTT 651 (915)
Q Consensus 630 -------~~~~~v~~i~~s~~~~~l~s~~ 651 (915)
........+.++|+|++++++.
T Consensus 245 ~~~~~~~~~~~~~~~i~~spdG~~lyvsn 273 (365)
T d1jofa_ 245 DRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred CCCCCCCCCCCCCCCEEECCCCCEEEEEC
T ss_conf 66654444357763169989999789971
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.5e-08 Score=67.68 Aligned_cols=224 Identities=11% Similarity=0.097 Sum_probs=117.0
Q ss_pred CCEEEEEECCCCCEEEEEE--------ECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 9779999917999399999--------47790999986998400246605653266763210101477754849999958
Q 002494 347 SNVMSMDFHPQQQTILLVG--------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (915)
Q Consensus 347 ~~V~~i~fspd~~~ll~~g--------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp 418 (915)
-.+....||||++++++.. +..+.+.++|+.++....-.. .......+....|||
T Consensus 61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~-----------------~~~~~~~l~~~~wSP 123 (465)
T d1xfda1 61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP-----------------PEVSNAKLQYAGWGP 123 (465)
T ss_dssp TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC-----------------TTCCSCCCSBCCBCS
T ss_pred CCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCCCEEECCC-----------------CCCCCCCCCEEEECC
T ss_conf 553213898988869999845100476033528999856884564157-----------------667764311002426
Q ss_pred CCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCC-----------------CEEEEEEECCCCEEEEEEEE-CCCCEE
Q ss_conf 999899998898599999048983233477533457-----------------76689991699907999991-899199
Q 002494 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG-----------------GVNDIAFAHPNKQLCIVTCG-DDKMIK 480 (915)
Q Consensus 419 d~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-----------------~v~~i~~s~~~~~~~l~s~~-~d~~i~ 480 (915)
||+.+|... ++.+.+.+..++...+.. ..+... .-..+.|||||+. |+... .+..+.
T Consensus 124 DG~~iafv~-~~nl~~~~~~~~~~~~lt--~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~--iaf~~~D~s~V~ 198 (465)
T d1xfda1 124 KGQQLIFIF-ENNIYYCAHVGKQAIRVV--STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR--LAYAAINDSRVP 198 (465)
T ss_dssp STTCEEEEE-TTEEEEESSSSSCCEEEE--CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE--EEEEEEECTTSC
T ss_pred CCCEEEEEE-CCEEEEEECCCCCEEEEE--CCCCCCEEECCCCCHHHHHHHCCCCCEEEECCCCCE--EEEEEECCCCCC
T ss_conf 785699996-132999954899658971--126766044366431001230366434897798986--899995366661
Q ss_pred EEECCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEEC------CCCCCEEEEEECCCCC
Q ss_conf 9996799067896188998789972037994199999679949999658998236850------8999179999979999
Q 002494 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD------APGNWCTMMAYSADGT 554 (915)
Q Consensus 481 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~i~~i~~sp~g~ 554 (915)
.+.+.... ......+..+.+...++.+ ....+.++|+.......... .....+..+.|+++++
T Consensus 199 ~~~~~~~~-----~~~~p~~~~~~Yp~~G~~n------p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~ 267 (465)
T d1xfda1 199 IMELPTYT-----GSIYPTVKPYHYPKAGSEN------PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK 267 (465)
T ss_dssp EEEECCCS-----SSSSCCCEEEECCBTTSCC------CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE
T ss_pred EEECCCCC-----CCCCCEEEEEECCCCCCCC------CCEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCE
T ss_conf 46412344-----5444313345302568889------721379983689817899952576766663045668757993
Q ss_pred EEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCE----EEEEECCCCCEE
Q ss_conf 8999963379983399997899926899527778744----799985999999
Q 002494 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL----GVVQFDTTRNRF 603 (915)
Q Consensus 555 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v----~~~~~sp~~~~l 603 (915)
.++...........+.++|..++++...+.......+ ....|+++|+.+
T Consensus 268 ~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~ 320 (465)
T d1xfda1 268 VAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF 320 (465)
T ss_dssp EEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred EEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEE
T ss_conf 89999741003013799707999278778972785173567860574689805
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.25 E-value=2.5e-08 Score=66.32 Aligned_cols=108 Identities=8% Similarity=0.035 Sum_probs=43.2
Q ss_pred EEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEE
Q ss_conf 99999799998999963379983399997899926899527778744799985999999999689919999699991479
Q 002494 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (915)
Q Consensus 545 ~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (915)
..++++++++.+++.. ....|..++............... ....++++++|+++++....+.|..++.... ...
T Consensus 143 ~~i~~~~~g~~~v~~~----~~~~i~~~d~~~~~~~~~~~~~~~-~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~-~~~ 216 (260)
T d1rwia_ 143 DGVAVDNSGNVYVTDT----DNNRVVKLEAESNNQVVLPFTDIT-APWGIAVDEAGTVYVTEHNTNQVVKLLAGST-TST 216 (260)
T ss_dssp CEEEECTTCCEEEEEG----GGTEEEEECTTTCCEEECCCSSCC-SEEEEEECTTCCEEEEETTTTEEEEECTTCS-CCE
T ss_pred CEEEECCCCCEEEECC----CCCCCCCCCCCCCEEEEEECCCCC-CCCCCEEEEEEEEEEEECCCCEEEEEECCCC-EEE
T ss_conf 2054548998864102----564332223431001222101147-8763123100013432148998999969997-699
Q ss_pred EECCCCCCCCCCEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 97179999983549995999999999589959999
Q 002494 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (915)
Q Consensus 625 ~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw 659 (915)
.+.. ........++++++|.++++-..++.|+.+
T Consensus 217 ~~~~-~~~~~P~~i~~d~~g~l~vad~~~~rI~~i 250 (260)
T d1rwia_ 217 VLPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKL 250 (260)
T ss_dssp ECCC-CSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred EECC-CCCCCEEEEEEECCCCEEEEECCCCEEEEE
T ss_conf 9706-998981799990899999997999989999
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.23 E-value=3.7e-08 Score=65.14 Aligned_cols=193 Identities=8% Similarity=-0.051 Sum_probs=72.6
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEE
Q ss_conf 49999958999899998898599999048983233477533457766899916999079999918991999996799067
Q 002494 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (915)
Q Consensus 411 v~~i~~spd~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (915)
...++++++++.+++....+.+.+++-.+..... .. .......++++.+++. ++++......+..++.......
T Consensus 59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~ 132 (260)
T d1rwia_ 59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQT 132 (260)
T ss_dssp CCCEEECTTCCEEEEETTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCE
T ss_pred CEEEEECCCCCEEEEEEEECEEEEEEECCCEEEE---EE-EEEEECCCCCCCCCCE--EEEECCCCCCCCCCCCCCCEEE
T ss_conf 4089993899889863100003554211200000---01-0000000002455320--5750335553211232222012
Q ss_pred EEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEE
Q ss_conf 89618899878997203799419999967994999965899823685089991799999799998999963379983399
Q 002494 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (915)
Q Consensus 491 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~ 570 (915)
............+++.++ ++++++...++.|..++.+.................+++.++|+.+++.. ..+.|.
T Consensus 133 ~~~~~~~~~p~~i~~~~~--g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~----~~~~i~ 206 (260)
T d1rwia_ 133 VLPFTGLNDPDGVAVDNS--GNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVV 206 (260)
T ss_dssp ECCCCSCCSCCEEEECTT--CCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTTEEE
T ss_pred EEEECCCCCCCEEEECCC--CCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEC----CCCEEE
T ss_conf 232036677520545489--98864102564332223431001222101147876312310001343214----899899
Q ss_pred EEECCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 9978999268995277787447999859999999996899199996
Q 002494 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (915)
Q Consensus 571 iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd 616 (915)
.++..... ...+....-.....++++++|+.+++-..+++|+.++
T Consensus 207 ~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 207 KLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp EECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred EEECCCCE-EEEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEEE
T ss_conf 99699976-9997069989817999908999999979999899995
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.19 E-value=4.3e-08 Score=64.72 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=57.4
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC-
Q ss_conf 1799999799998999963379983399997899926899527778744799985999999999689919999699991-
Q 002494 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN- 621 (915)
Q Consensus 543 ~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~- 621 (915)
.+..++++|||+.+++.. .++.|+.|+.. ++.. .+..... .+.+++++++|+++++...++.+..++.....
T Consensus 29 ~~e~iAv~pdG~l~vt~~----~~~~I~~i~p~-g~~~-~~~~~~~-~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~ 101 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNH----EVGEIVSITPD-GNQQ-IHATVEG-KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG 101 (302)
T ss_dssp CEEEEEECTTSCEEEEET----TTTEEEEECTT-CCEE-EEEECSS-EEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred CCCCEEECCCCCEEEEEC----CCCEEEEEECC-CCEE-EEECCCC-CCCEEEECCCCCEEEEECCCCEEEEEEECCCCC
T ss_conf 847877999988999968----89989999089-9889-9971799-853689867788699832895378887101111
Q ss_pred EEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 4799717999998354999599999999958995999986998
Q 002494 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 622 ~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
....+.........+.+.+.+++.++++.+.++.+..++...+
T Consensus 102 ~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~ 144 (302)
T d2p4oa1 102 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 144 (302)
T ss_dssp CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred CEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEECCCC
T ss_conf 0121023578632216677157978750356554102421687
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.16 E-value=1.4e-07 Score=61.41 Aligned_cols=71 Identities=10% Similarity=0.214 Sum_probs=30.8
Q ss_pred EEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 47999859999999996-89919999699991479971799999835499959999999995899599998699
Q 002494 591 LGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (915)
Q Consensus 591 v~~~~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~ 663 (915)
...++++++|+.+++-. .++.|.+++. +++.+..+...........+++.++|.+++ +..++.|++|....
T Consensus 202 P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 202 PIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQ 273 (279)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSC
T ss_pred CCCCCCCCCCEEEEEECCCCCEEEEECC-CCCEEEEEECCCCCCCEEEEEEECCCCEEE-EECCCEEEEEEEEE
T ss_conf 7623231478699997899808999999-999999996888889883799908991999-91899699987220
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.16 E-value=1.5e-07 Score=61.23 Aligned_cols=263 Identities=14% Similarity=0.108 Sum_probs=132.9
Q ss_pred CEEEEEECCCCCEEEEEEEC-------CCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 77999991799939999947-------79099998699840024660565326676321010147775484999995899
Q 002494 348 NVMSMDFHPQQQTILLVGTN-------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (915)
Q Consensus 348 ~V~~i~fspd~~~ll~~gs~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~ 420 (915)
..-.++|.|+|+ +.++... +|.|..|+..++..... ... ...........++|.+++
T Consensus 19 g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~------~~~---------~~~~~~g~P~Gl~~~~dg 82 (314)
T d1pjxa_ 19 GAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI------CKP---------EVNGYGGIPAGCQCDRDA 82 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE------ECC---------EETTEECCEEEEEECSSS
T ss_pred CCEEEEEECCCC-EEEEECCCCCCCCCCCEEEEEECCCCCEEEE------ECC---------CCCCCCCCCEEEEEECCC
T ss_conf 971739969999-9999875402345299999998999959999------777---------655678853069990799
Q ss_pred CEEEEEECCCEEEEEEECCCCCEEEEEEEECC-CCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCC
Q ss_conf 98999988985999990489832334775334-57766899916999079999918991999996799067896188998
Q 002494 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (915)
Q Consensus 421 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 499 (915)
+.++++...+.+...+.++...........+. -...+++++.++|. +.++... +....++... ......+.
T Consensus 83 ~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~-~~~~~~~~~~-----~~~~~~G~ 154 (314)
T d1pjxa_ 83 NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPA-GEVAPADYTR-----SMQEKFGS 154 (314)
T ss_dssp SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECB-CBCTTSCCCB-----TTSSSCEE
T ss_pred CEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEECCCCC--EEEECCC-CCCCCCCCCC-----EECCCCCE
T ss_conf 98999977983999947774799973343245457872789888998--9991486-6754320110-----00268843
Q ss_pred EEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCC----EEEEEEECCCCCCEEEEEECC
Q ss_conf 7899720379941999996799499996589982368508999179999979999----899996337998339999789
Q 002494 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT----RLFSCGTSKEGESHLVEWNES 575 (915)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~----~l~~~~~~~~~~~~i~iwd~~ 575 (915)
+..-..||.+.... ......+.++|++++. .++++.. ..+.|+.+++.
T Consensus 155 --------------v~~~~~dg~~~~~~-----------~~~~~pNGi~~~~d~d~~~~~lyv~d~---~~~~i~~~d~~ 206 (314)
T d1pjxa_ 155 --------------IYCFTTDGQMIQVD-----------TAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIK 206 (314)
T ss_dssp --------------EEEECTTSCEEEEE-----------EEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEE
T ss_pred --------------EEEEEECCCEEEEE-----------CCCCEEEEEEECCCCCCCEEEEEEEEE---CCCCEEEEECC
T ss_conf --------------89995257403750-----------785322136997887763037999860---24311776116
Q ss_pred CC-EE-----EEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEE-E
Q ss_conf 99-26-----89952777874479998599999999968991999969999147997179999983549995999999-9
Q 002494 576 EG-AI-----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-A 648 (915)
Q Consensus 576 ~~-~~-----~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~ 648 (915)
.. .. ...+.+........+++..+|+.+++....+.|.+|+...+..+..+..... ..++++|.++++.| +
T Consensus 207 ~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~--~~t~~afg~d~~~lyV 284 (314)
T d1pjxa_ 207 GPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFV 284 (314)
T ss_dssp ETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEE
T ss_pred CCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEEECCCC--CEEEEEEECCCCEEEE
T ss_conf 76543015689971335666410257834785799982799999996999979999979999--8789999289899999
Q ss_pred EEECCCCEEEEECCCC
Q ss_conf 9958995999986998
Q 002494 649 VTTSDNGIKILANSDG 664 (915)
Q Consensus 649 s~~~dg~i~iwd~~~~ 664 (915)
+.+.+|.|...++...
T Consensus 285 t~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 285 TEHENNAVWKFEWQRN 300 (314)
T ss_dssp EETTTTEEEEEECSSC
T ss_pred EECCCCCEEEEECCCC
T ss_conf 9878991999978999
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.09 E-value=3e-07 Score=59.20 Aligned_cols=30 Identities=10% Similarity=0.136 Sum_probs=13.8
Q ss_pred CCCEEEEEEECCCCEE-EEEC-CCEEEEEECC
Q ss_conf 8741299971299759-9851-9925996615
Q 002494 840 EESAACIALSKNDSYV-MSAS-GGKVSLFNMM 869 (915)
Q Consensus 840 ~~~i~~l~~S~dg~~L-~s~s-d~~i~iw~l~ 869 (915)
....++++|.+|++.| ++.+ .+.|...++.
T Consensus 267 ~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 267 FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCEEEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 99878999928989999998789919999789
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.04 E-value=4.6e-07 Score=58.02 Aligned_cols=154 Identities=11% Similarity=0.112 Sum_probs=57.4
Q ss_pred CEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEEC--CCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 7668999169990799999189919999967990678961--88998789972037994199999679949999658998
Q 002494 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG 532 (915)
Q Consensus 455 ~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 532 (915)
....+++.+++. ++++....+.+.+++ .+++.+..+. .+......+++.+ +++.+++....+.|.+|+.. +.
T Consensus 115 ~p~~~avd~~G~--i~v~~~~~~~~~~~~-~~g~~~~~~g~~~~~~~~~~i~~d~--~g~i~v~d~~~~~V~~~d~~-G~ 188 (279)
T d1q7fa_ 115 HPRGVTVDNKGR--IIVVECKVMRVIIFD-QNGNVLHKFGCSKHLEFPNGVVVND--KQEIFISDNRAHCVKVFNYE-GQ 188 (279)
T ss_dssp CEEEEEECTTSC--EEEEETTTTEEEEEC-TTSCEEEEEECTTTCSSEEEEEECS--SSEEEEEEGGGTEEEEEETT-CC
T ss_pred CCCEECCCCCCC--EEEEEECCCEEEEEC-CCCCEEECCCCCCCCCCCCEEEECC--CEEEEEEECCCCCEEEEECC-CC
T ss_conf 542000014784--799963263256762-6875010022001025662432012--00178620135510023047-94
Q ss_pred CEEEECC--CCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCC-CCCEEEEEECCCCCEEEEEECC
Q ss_conf 2368508--999179999979999899996337998339999789992689952777-8744799985999999999689
Q 002494 533 SRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDE 609 (915)
Q Consensus 533 ~~~~~~~--~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d 609 (915)
....+.. .......+++.++|+.+++-.. ++..|.+++. +|+.+..+.... ......+++.|+|.+ +++..+
T Consensus 189 ~~~~~g~~g~~~~P~giavD~~G~i~Vad~~---~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l-~V~~~n 263 (279)
T d1q7fa_ 189 YLRQIGGEGITNYPIGVGINSNGEILIADNH---NNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV-VLASKD 263 (279)
T ss_dssp EEEEESCTTTSCSEEEEEECTTCCEEEEECS---SSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE-EEEETT
T ss_pred EEEEECCCCCCCCCCCCCCCCCCEEEEEECC---CCCEEEEECC-CCCEEEEEECCCCCCCEEEEEEECCCCE-EEEECC
T ss_conf 4453011321148762323147869999789---9808999999-9999999968888898837999089919-999189
Q ss_pred CCEEEEECCC
Q ss_conf 9199996999
Q 002494 610 FQIKFWDMDN 619 (915)
Q Consensus 610 g~i~iwd~~~ 619 (915)
+.|++|....
T Consensus 264 ~~v~~fr~~~ 273 (279)
T d1q7fa_ 264 YRLYIYRYVQ 273 (279)
T ss_dssp TEEEEEECSC
T ss_pred CEEEEEEEEE
T ss_conf 9699987220
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.01 E-value=6.5e-07 Score=57.05 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=11.6
Q ss_pred EEECCCCEEEEECCCEEEEEECCCCC
Q ss_conf 97129975998519925996615899
Q 002494 847 ALSKNDSYVMSASGGKVSLFNMMTFK 872 (915)
Q Consensus 847 ~~S~dg~~L~s~sd~~i~iw~l~t~k 872 (915)
.||+||+.|+...++.|.++|+.+++
T Consensus 239 ~~SpDG~~I~f~~~~~l~~~d~~~g~ 264 (281)
T d1k32a2 239 HLNTDGRRILFSKGGSIYIFNPDTEK 264 (281)
T ss_dssp EEEESSSCEEEEETTEEEEECTTTCC
T ss_pred CCCCCCCEEEEEECCEEEEEECCCCC
T ss_conf 28679899999859999999899998
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.94 E-value=1.1e-06 Score=55.53 Aligned_cols=240 Identities=13% Similarity=0.072 Sum_probs=130.9
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 99779999917999399999477909999869984002466056532667632101014777548499999589998999
Q 002494 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (915)
Q Consensus 346 ~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s 425 (915)
...+..++|.++|+ +.++....+.|..|+..+++.... ..........+++++||+.+++
T Consensus 39 ~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~va 98 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFVC 98 (319)
T ss_dssp CCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEEE
T ss_pred CCCCEECEECCCCC-EEEEECCCCEEEEEECCCCEEEEE-------------------EECCCCCEEEEEECCCCCEEEE
T ss_conf 86747078999999-999977999999998999959999-------------------9489987038999999999999
Q ss_pred EECC----CEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCEE
Q ss_conf 9889----859999904898323347753345776689991699907999991899199999679906789618899878
Q 002494 426 AFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (915)
Q Consensus 426 ~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 501 (915)
...+ +.+...+..+..... ...-.........+.+.++|. ++++...... . .....+.
T Consensus 99 ~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~--------~-------~~~g~v~ 160 (319)
T d2dg1a1 99 YLGDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYS--------T-------NPLGGVY 160 (319)
T ss_dssp ECTTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECTTSC--EEEEECCCBT--------T-------BCCEEEE
T ss_pred ECCCCCCCEEEEEECCCCCEEEE-ECCCCCCCCCCCCEEEEECCC--EEECCCCCCC--------C-------CCCCEEE
T ss_conf 56897311049987389963644-426777555875226773065--3200135400--------2-------5742157
Q ss_pred EEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCC-EEE
Q ss_conf 9972037994199999679949999658998236850899917999997999989999633799833999978999-268
Q 002494 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIK 580 (915)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~ 580 (915)
.+.++. . .+... .......+.++|+|+++.++.+.. ..+.|+.|++... ...
T Consensus 161 --~~~~dg--~---------~~~~~-----------~~~~~~pnGia~s~dg~~lyvad~---~~~~I~~~d~~~~g~~~ 213 (319)
T d2dg1a1 161 --YVSPDF--R---------TVTPI-----------IQNISVANGIALSTDEKVLWVTET---TANRLHRIALEDDGVTI 213 (319)
T ss_dssp --EECTTS--C---------CEEEE-----------EEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSSSE
T ss_pred --EEECCC--C---------EEEEE-----------EECCCEEEEEEECCCCCEEEEECC---CCCCEEEEEECCCCCEE
T ss_conf --884166--3---------35788-----------612330100010122212787404---68914799976998362
Q ss_pred EE-------ECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCC----CCCCCCEEEECCCCCEEEE
Q ss_conf 99-------527778744799985999999999689919999699991479971799----9998354999599999999
Q 002494 581 RT-------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG----GLPASPRLRFNKEGSLLAV 649 (915)
Q Consensus 581 ~~-------~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~i~~s~~~~~l~s 649 (915)
.. ...... ....++++.+|++.++....+.|.+++. .++.+..+.... ....+++++|.+++..+++
T Consensus 214 ~~~~~~~~~~~~~~~-~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~ 291 (319)
T d2dg1a1 214 QPFGATIPYYFTGHE-GPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLII 291 (319)
T ss_dssp EEEEEEEEEECCSSS-EEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred CCCCCEEEECCCCCC-CEEEEEECCCCCEEEEECCCCEEEEECC-CCCEEEEEECCCCCCCCCCEEEEEEEECCCCEEEE
T ss_conf 024633331257764-1036417389999999848998999979-99598899688757786750466778079988999
Q ss_pred EEC
Q ss_conf 958
Q 002494 650 TTS 652 (915)
Q Consensus 650 ~~~ 652 (915)
...
T Consensus 292 t~~ 294 (319)
T d2dg1a1 292 CSN 294 (319)
T ss_dssp EEE
T ss_pred ECC
T ss_conf 857
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.90 E-value=1.5e-06 Score=54.62 Aligned_cols=74 Identities=5% Similarity=0.077 Sum_probs=35.0
Q ss_pred CEEEEEECCCCCEEEEE-ECCCCEEEEECCCC-CEEEEE-----CCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 44799985999999999-68991999969999-147997-----179999983549995999999999589959999869
Q 002494 590 SLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNM-NMLTTV-----DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (915)
Q Consensus 590 ~v~~~~~sp~~~~l~~~-~~dg~i~iwd~~~~-~~~~~~-----~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~ 662 (915)
..+.++|+|+++.|+.+ +..+.|+.|++... ...... .........-.+++..+|++.++....+.|.+++.
T Consensus 178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p- 256 (319)
T d2dg1a1 178 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK- 256 (319)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-
T ss_pred EEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECC-
T ss_conf 0100010122212787404689147999769983620246333312577641036417389999999848998999979-
Q ss_pred CC
Q ss_conf 98
Q 002494 663 DG 664 (915)
Q Consensus 663 ~~ 664 (915)
+|
T Consensus 257 ~G 258 (319)
T d2dg1a1 257 RG 258 (319)
T ss_dssp TS
T ss_pred CC
T ss_conf 99
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.84 E-value=2.5e-06 Score=53.16 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=58.4
Q ss_pred EECCC--CCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-C
Q ss_conf 99179--99399999477909999869984002466056532667632101014777548499999589998999988-9
Q 002494 353 DFHPQ--QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-K 429 (915)
Q Consensus 353 ~fspd--~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s~~~-d 429 (915)
..||| |+.++++. +|.|.+.++.+++... +..+.+.+...+|||||+.||.... +
T Consensus 5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~ 62 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG 62 (281)
T ss_dssp CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred CCCCCCCCCEEEEEE--CCCEEEEECCCCCEEE--------------------EECCCCCCCCEEECCCCCEEEEEEEEC
T ss_conf 258887999999990--9968999899998799--------------------766998526779878999899998628
Q ss_pred -----CEEEEEEECCCCCEEEEE---EEECCCCCEEEEEEECCCCEEEEEEE
Q ss_conf -----859999904898323347---75334577668999169990799999
Q 002494 430 -----HIVHLYTYNPTGELRQHL---EIDAHVGGVNDIAFAHPNKQLCIVTC 473 (915)
Q Consensus 430 -----g~i~iwd~~~~~~~~~~~---~~~~h~~~v~~i~~s~~~~~~~l~s~ 473 (915)
..|.+++..++....... .............|+|+++. ++..
T Consensus 63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~--l~~~ 112 (281)
T d1k32a2 63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNL--IIST 112 (281)
T ss_dssp TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCE--EEEE
T ss_pred CCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCE--EEEE
T ss_conf 9877228999982599528864168875476444343102798877--9999
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.45 E-value=3.2e-05 Score=45.97 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=19.1
Q ss_pred EEEEEEECCCCEEEEECCCCCEECC
Q ss_conf 3999994779099998699840024
Q 002494 360 TILLVGTNVGDISLWEVGSRERLAH 384 (915)
Q Consensus 360 ~ll~~gs~dg~i~iwd~~~~~~~~~ 384 (915)
+.+.+|+..|.|+++-+.++..+..
T Consensus 14 y~f~SgG~sG~v~v~G~PSmR~l~~ 38 (459)
T d1fwxa2 14 YGFWSSGQSGEMRILGIPSMRELMR 38 (459)
T ss_dssp EEEECCBTTCEEEEEEETTCCEEEE
T ss_pred EEEEECCCCCEEEEEECCCCCEEEE
T ss_conf 9994078663389995488635877
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.39 E-value=4.7e-05 Score=44.89 Aligned_cols=100 Identities=19% Similarity=0.201 Sum_probs=51.8
Q ss_pred EEEEEECCCCCEEEEEEECCCCCCEEEEEECCC--C------EEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 799999799998999963379983399997899--9------26899527778744799985999999999689919999
Q 002494 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESE--G------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615 (915)
Q Consensus 544 i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~--~------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iw 615 (915)
.+.++|+++++.+..+.. ..+.|+.+++.. + .....+.+... ....++++.+|++.++.-..+.|..|
T Consensus 150 ~Ng~~~s~d~~~l~~~dt---~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g-~pdG~~vD~~GnlWva~~~~g~V~~~ 225 (295)
T d2ghsa1 150 PNSICFSPDGTTGYFVDT---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG-GMDGSVCDAEGHIWNARWGEGAVDRY 225 (295)
T ss_dssp EEEEEECTTSCEEEEEET---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS-EEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred CCEEEECCCCCEEEEEEC---CCCEEEEEEECCCCCCCCCCEEEEECCCCCCC-CCCCEEECCCCCEEEEEECCCCEEEE
T ss_conf 640246587766898515---66324676453555532453578841675556-66326786999989532078846885
Q ss_pred ECCCCCEEEEECCCCCCCCCCEEEEC-CCCCEEEEE
Q ss_conf 69999147997179999983549995-999999999
Q 002494 616 DMDNMNMLTTVDADGGLPASPRLRFN-KEGSLLAVT 650 (915)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~v~~i~~s-~~~~~l~s~ 650 (915)
+. .++.+..+..... .+++++|- ++.+.|++.
T Consensus 226 dp-~G~~~~~i~lP~~--~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 226 DT-DGNHIARYEVPGK--QTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp CT-TCCEEEEEECSCS--BEEEEEEESTTSCEEEEE
T ss_pred CC-CCCEEEEECCCCC--CEEEEEEECCCCCEEEEE
T ss_conf 69-9928668638998--527989828999999999
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.36 E-value=5.4e-05 Score=44.50 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=21.1
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEC-CCCCEEE
Q ss_conf 1799999799998999963379983399997899926899527778744799985-9999999
Q 002494 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFL 604 (915)
Q Consensus 543 ~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~ 604 (915)
....+++..+|+..++.. +.+.|..||. +++.+..+..... .+++++|. ++.+.|+
T Consensus 200 ~pdG~~vD~~GnlWva~~----~~g~V~~~dp-~G~~~~~i~lP~~-~~T~~~FGG~d~~~Ly 256 (295)
T d2ghsa1 200 GMDGSVCDAEGHIWNARW----GEGAVDRYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLL 256 (295)
T ss_dssp EEEEEEECTTSCEEEEEE----TTTEEEEECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEE
T ss_pred CCCCEEECCCCCEEEEEE----CCCCEEEECC-CCCEEEEECCCCC-CEEEEEEECCCCCEEE
T ss_conf 663267869999895320----7884688569-9928668638998-5279898289999999
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.68 E-value=0.001 Score=36.21 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=42.3
Q ss_pred CCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCC-CEEE-EEEECCCCEEEEEEEE------CCCCEEEEECCCCEEEE
Q ss_conf 99899998898599999048983233477533457-7668-9991699907999991------89919999967990678
Q 002494 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG-GVND-IAFAHPNKQLCIVTCG------DDKMIKVWDVVAGRKQY 491 (915)
Q Consensus 420 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~-i~~s~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~ 491 (915)
+..++.++.|+.+.-.|.++++.+.....-..+.. .++. ..+. ++. ++.+. ..|.|+-+|..+|+.+.
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~-~~~---vivg~~~~e~~~~G~v~A~Da~TG~~~W 196 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDK---VIIGSSGAELGVRGYLTAYDVKTGEQVW 196 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTE---EEECCBCGGGTCCCEEEEEETTTCCEEE
T ss_pred CEEEEEEECCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCEE-CCE---EEEEECCCCCCCCCCEEEEECCCCCEEE
T ss_conf 629999807987685436568410231014655564224588177-775---8993023444335732898878885778
Q ss_pred EECC
Q ss_conf 9618
Q 002494 492 TFEG 495 (915)
Q Consensus 492 ~~~~ 495 (915)
++..
T Consensus 197 ~~~t 200 (596)
T d1w6sa_ 197 RAYA 200 (596)
T ss_dssp EEES
T ss_pred EEEC
T ss_conf 8653
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=9.4e-05 Score=42.93 Aligned_cols=82 Identities=15% Similarity=0.284 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-------CHHH
Q ss_conf 322147899998899998703697899999998400011469888999987622223223222255699-------5578
Q 002494 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (915)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (915)
++.. ++|+++.|.||||+..++..+|+.++.+.-..+...+.+++.+|..+....++.+++....+++ ++.+
T Consensus 41 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s 119 (149)
T d2nxpa1 41 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS 119 (149)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECHHH
T ss_conf 9998-899999999999997898789999999822243588999999987379988873248999973798589964999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q 002494 140 RNIMLVELKK 149 (915)
Q Consensus 140 R~~l~~~l~~ 149 (915)
-..|+..|++
T Consensus 120 ~~lLl~~L~~ 129 (149)
T d2nxpa1 120 YQLLKRHLQE 129 (149)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
T ss_conf 9999999986
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.66 E-value=0.001 Score=36.10 Aligned_cols=95 Identities=11% Similarity=0.021 Sum_probs=35.2
Q ss_pred CEEEEEECCCCCEEEEEE-CCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCE
Q ss_conf 849999958999899998-8985999990489832334775334577668999169990799999189919999967990
Q 002494 410 SVNRCVWGPDGLMLGVAF-SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (915)
Q Consensus 410 ~v~~i~~spd~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~ 488 (915)
.+..++|.+..+.+..+. .++.|...++.+..... .+......+.++++..-+.. +..+....+.|.+.++....
T Consensus 37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~dg~~ 112 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGTQ 112 (263)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCS
T ss_pred CEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEE---EEEECCCCCCEEEEECCCCE-EEEECCCCCEEEEEECCCCE
T ss_conf 579999985899999998999919999766587289---88701264207999636886-88842678979988058816
Q ss_pred EEEEECCCCCCEEEEEEECC
Q ss_conf 67896188998789972037
Q 002494 489 KQYTFEGHEAPVYSVCPHHK 508 (915)
Q Consensus 489 ~~~~~~~~~~~v~~i~~~~~ 508 (915)
....+.........+++.|.
T Consensus 113 ~~~l~~~~l~~p~~l~vdp~ 132 (263)
T d1npea_ 113 RRVLFDTGLVNPRGIVTDPV 132 (263)
T ss_dssp CEEEECSSCSSEEEEEEETT
T ss_pred EEEEECCCCCCCCEEEEECC
T ss_conf 77771256668727999256
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.31 E-value=0.0029 Score=33.16 Aligned_cols=121 Identities=10% Similarity=0.121 Sum_probs=59.5
Q ss_pred EEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCE-EEEEECCCCCEEEEEECCCEEEEEEECC
Q ss_conf 999994779099998699840024660565326676321010147775484-9999958999899998898599999048
Q 002494 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV-NRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (915)
Q Consensus 361 ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~i~~spd~~~l~s~~~dg~i~iwd~~~ 439 (915)
.+++++.++.|.-+|..+|+.+ |..+........ .......+ ..+... ...+..++.++.+.-.|..+
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~-------W~~~~~~~~~~~--~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~t 147 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRI-------WTYDPQIDRSTG--FKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAAT 147 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEE-------EEECCCCCGGGG--GGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTT
T ss_pred EEEEECCCCEEEEEECCCCCEE-------EEECCCCCCCCC--CCCCCCCCCCCCEEE--CCCEEEEECCCCEEEECCCC
T ss_conf 9999789996999958999858-------786798876533--334566566652387--88189973365406661624
Q ss_pred CCCEEEEEEEECCCCCE--EEEEEECCCCEEEEEEEE------CCCCEEEEECCCCEEEEEECC
Q ss_conf 98323347753345776--689991699907999991------899199999679906789618
Q 002494 440 TGELRQHLEIDAHVGGV--NDIAFAHPNKQLCIVTCG------DDKMIKVWDVVAGRKQYTFEG 495 (915)
Q Consensus 440 ~~~~~~~~~~~~h~~~v--~~i~~s~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~ 495 (915)
++.+............+ +..-...++. ++.++ ..|.|+-+|..+|+.+..+..
T Consensus 148 G~~~W~~~~~~~~~~~~~~~~~p~v~~~~---vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 208 (573)
T d1kb0a2 148 GKEVWHQNTFEGQKGSLTITGAPRVFKGK---VIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (573)
T ss_dssp CCEEEEEETTTTCCSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCCEECCCCCCCCCCEEEEECCEEEEECC---EEEEECCCCCCCCCEEEEEECCCCCCEEEEEE
T ss_conf 30010146756876507860102797062---79921344554322189985688651025531
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.23 E-value=0.0035 Score=32.62 Aligned_cols=119 Identities=9% Similarity=0.111 Sum_probs=60.3
Q ss_pred EEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCC--CCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEC
Q ss_conf 99999477909999869984002466056532667632--1010147775484999995899989999889859999904
Q 002494 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMP--LQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN 438 (915)
Q Consensus 361 ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~ 438 (915)
.+++++.++.|.-.|..+|+.+ |........ ............+ +. .+..++.+..++.+.-.|..
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~l-------W~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~v~~~~~~g~l~Alda~ 135 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKEL-------WRYDPEVAKVKARTSCCDAVNRGV---AL--WGDKVYVGTLDGRLIALDAK 135 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEE-------EEECCCCCGGGGGGCTTCSCCCCC---EE--EBTEEEEECTTSEEEEEETT
T ss_pred EEEEECCCCEEEEEECCCCCEE-------EEECCCCCCCCCCCCCCCCCCCCC---CE--ECCEEEEEECCCEEEEEECC
T ss_conf 9999789995999968999879-------887798776445443224653575---04--68849997389879999777
Q ss_pred CCCCEEEEEEEECCCC-CEEEEEEECCCCEEEEEEEE------CCCCEEEEECCCCEEEEEEC
Q ss_conf 8983233477533457-76689991699907999991------89919999967990678961
Q 002494 439 PTGELRQHLEIDAHVG-GVNDIAFAHPNKQLCIVTCG------DDKMIKVWDVVAGRKQYTFE 494 (915)
Q Consensus 439 ~~~~~~~~~~~~~h~~-~v~~i~~s~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~ 494 (915)
+++.+........+.. .++..-.--++. ++.+. ..|.|.-+|..+++.+.++.
T Consensus 136 tG~~~w~~~~~~~~~~~~~~~~p~v~~~~---vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 136 TGKAIWSQQTTDPAKPYSITGAPRVVKGK---VIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp TCCEEEEEECSCTTSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCCEEECCCCCCCCCCEEEEEEEEEECCC---CCCCCCCEECCCCCEEEEEECCCCEEEEEEE
T ss_conf 89577305766755404543200450685---1036531100135538999778862776641
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.0036 Score=32.55 Aligned_cols=74 Identities=14% Similarity=0.080 Sum_probs=27.8
Q ss_pred CEEEEEECCCCCEEEEE-ECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 44799985999999999-6899199996999914799717999998354999599999999958995999986998
Q 002494 590 SLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 590 ~v~~~~~sp~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
....+++++.++.|+.+ ...+.|...++...................++++.. +.+..+-..++.|...+..++
T Consensus 165 ~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~ly~td~~~~~I~~~~~~~g 239 (266)
T d1ijqa1 165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 239 (266)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred EEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEEC-CEEEEEECCCCEEEEEECCCC
T ss_conf 016998613356999952896799999899997799993898556647999989-999999899996999999899
|
| >d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Encephalitozoon cuniculi [TaxId: 6035]
Probab=97.19 E-value=0.00028 Score=39.81 Aligned_cols=95 Identities=14% Similarity=0.224 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-------CHHH
Q ss_conf 322147899998899998703697899999998400011469888999987622223223222255699-------5578
Q 002494 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (915)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (915)
++.. ++|+++.|.||||+..++.++|..++.+.-..+. .+.+++.+|+.+.++.++.+++....+++ +..+
T Consensus 23 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~~n~~~~~~r~nKy~i~ms~~s 100 (131)
T d2j4ba1 23 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYA 100 (131)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECHHH
T ss_conf 9998-8999999999999978878899999998130288-8999999987469998882229999986596588967999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999998753196753457788877148999999989
Q 002494 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSL 179 (915)
Q Consensus 140 R~~l~~~l~~~i~~~~~~~~~~~~~~~p~~rL~~ll~qal 179 (915)
-..|+..|++- -..-+..++++.+
T Consensus 101 ~~lL~~fL~~~----------------~~~~il~iin~~l 124 (131)
T d2j4ba1 101 FDLLINFLEER----------------NLTYILKILNQHL 124 (131)
T ss_dssp HHHHHHHHHHT----------------TCHHHHHHHHHHE
T ss_pred HHHHHHHHHHC----------------CCHHHHHHHHHHE
T ss_conf 99999999858----------------8659999999833
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.18 E-value=0.004 Score=32.28 Aligned_cols=73 Identities=10% Similarity=0.091 Sum_probs=34.4
Q ss_pred CCCEECCCCCEEECCCC--CCEEEEECCC-------CCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEE
Q ss_conf 78411048860210378--9446762489-------89966335864178668885699999318852878312551587
Q 002494 728 IDGSRLVDVKPRVAEDV--DKIKSWRIPD-------ISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKL 798 (915)
Q Consensus 728 ~~~~~s~dg~~la~~~~--~~i~iw~~~~-------~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~i 798 (915)
..+..+|||+++++++. .++.++++.. ..++..+..... . ....-..-+|+..|....+..-|+.|.-
T Consensus 278 HGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~-e--lglgPLht~fd~~g~aytslfids~v~k 354 (459)
T d1fwxa2 278 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-E--LGLGPLHTAFDGRGNAYTSLFLDSQVVK 354 (459)
T ss_dssp CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC-B--CCSCEEEEEECTTSEEEEEETTTTEEEE
T ss_pred CCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEEC-C--CCCCCCCCCCCCCCEEEEEEECCCEEEE
T ss_conf 733889999789993885895799982253566504688452179611-3--5767662033898429998612316999
Q ss_pred EECCC
Q ss_conf 65255
Q 002494 799 WKWQR 803 (915)
Q Consensus 799 W~l~~ 803 (915)
|++..
T Consensus 355 w~~~~ 359 (459)
T d1fwxa2 355 WNIED 359 (459)
T ss_dssp EEHHH
T ss_pred EECCH
T ss_conf 73440
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.15 E-value=0.0042 Score=32.10 Aligned_cols=24 Identities=4% Similarity=0.077 Sum_probs=15.1
Q ss_pred ECCCCEEEEEECCCEEEEEECCCC
Q ss_conf 318852878312551587652555
Q 002494 781 TNSGLSLLALASNAVHKLWKWQRT 804 (915)
Q Consensus 781 s~d~~~l~~~~~dg~v~iW~l~~~ 804 (915)
+-.+..+++++.||.++.+|...+
T Consensus 466 ~TagglVF~G~~dg~l~A~Da~tG 489 (560)
T d1kv9a2 466 STAGNLVFQGTAAGQMHAYSADKG 489 (560)
T ss_dssp EETTTEEEEECTTSEEEEEETTTC
T ss_pred EECCCEEEEECCCCCEEEEECCCC
T ss_conf 987998999778981999999998
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.14 E-value=0.0044 Score=32.00 Aligned_cols=242 Identities=8% Similarity=-0.032 Sum_probs=133.3
Q ss_pred CCEEEEEECCCEEEEEEECCCCCE--EEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCC
Q ss_conf 998999988985999990489832--334775334577668999169990799999189919999967990678961889
Q 002494 420 GLMLGVAFSKHIVHLYTYNPTGEL--RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (915)
Q Consensus 420 ~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 497 (915)
|.+|+.+.. +.|+-.+++..... .....+..+...+..++|....+. ++.+-..++.|+..++..+.....+....
T Consensus 1 ~~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~ 78 (263)
T d1npea_ 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDL 78 (263)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred CCEEEEECC-CEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCE-EEEEECCCCEEEEEECCCCCCEEEEEECC
T ss_conf 989999489-8299997888665544531001268775799999858999-99998999919999766587289887012
Q ss_pred CCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCC
Q ss_conf 98789972037994199999679949999658998236850899917999997999989999633799833999978999
Q 002494 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (915)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~ 577 (915)
..+.++++.+..+ ++..+-...+.|.+.+++.................++..|...+++..... .+...|...++...
T Consensus 79 ~~p~~iAvD~~~~-~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~-~~~~~I~r~~~dG~ 156 (263)
T d1npea_ 79 GSPEGIALDHLGR-TIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGT 156 (263)
T ss_dssp CCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC-SSSCEEEEEETTSC
T ss_pred CCCCEEEEECCCC-EEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCCEEEEECC-CCCCEEEEECCCCC
T ss_conf 6420799963688-688842678979988058816777712566687279992566927995348-99768999667899
Q ss_pred EEEEEECCCCCCCEEEEEECCCCCEEEEE-ECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCE
Q ss_conf 26899527778744799985999999999-68991999969999147997179999983549995999999999589959
Q 002494 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (915)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i 656 (915)
.........-. ....+++++.++.|+.+ ...+.|...++........+.... ...++++. ++.+..+-...+.|
T Consensus 157 ~~~~i~~~~~~-~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~---~P~~lav~-~~~lYwtd~~~~~I 231 (263)
T d1npea_ 157 NRRILAQDNLG-LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY-GKNLYYTDWKTNSV 231 (263)
T ss_dssp CCEEEECTTCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE-TTEEEEEETTTTEE
T ss_pred CCEEEEEECCC-CCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEECCCC---CCEEEEEE-CCEEEEEECCCCEE
T ss_conf 72365530355-553079950475899992899999999999997699988999---86899999-99999999999979
Q ss_pred EEEECCCCCEEEEEC
Q ss_conf 999869985204220
Q 002494 657 KILANSDGVRLLRML 671 (915)
Q Consensus 657 ~iwd~~~~~~~~~~~ 671 (915)
...+..++ +....+
T Consensus 232 ~~~~~~~g-~~~~~~ 245 (263)
T d1npea_ 232 IAMDLAIS-KEMDTF 245 (263)
T ss_dssp EEEETTTT-EEEEEE
T ss_pred EEEECCCC-CCCEEE
T ss_conf 99989899-510698
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.0045 Score=31.92 Aligned_cols=240 Identities=8% Similarity=-0.035 Sum_probs=124.3
Q ss_pred EEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEEEC
Q ss_conf 39999947790999986998400246605653266763210101477754849999958999899998-89859999904
Q 002494 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYN 438 (915)
Q Consensus 360 ~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s~~-~dg~i~iwd~~ 438 (915)
+++++- ...|+..++.+..... +......+..++|.+..+.+.-+. ..+.|.-.++.
T Consensus 3 fLl~s~--~~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~ 60 (266)
T d1ijqa1 3 YLFFTN--RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 60 (266)
T ss_dssp EEEEEC--BSSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-
T ss_pred EEEEEC--CCEEEEEECCCCCCEE--------------------EECCCCCEEEEEEEECCCEEEEEECCCCEEEEEEEC
T ss_conf 999978--7718999899985266--------------------417998559999980899999999979979999935
Q ss_pred CCCCEEE-EEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEE
Q ss_conf 8983233-477533457766899916999079999918991999996799067896188998789972037994199999
Q 002494 439 PTGELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517 (915)
Q Consensus 439 ~~~~~~~-~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~ 517 (915)
....... ...+......+..+++.+.+.. +..+-...+.|.+.++..................+++.|.. +.++.+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~-g~ly~~~ 138 (266)
T d1ijqa1 61 RAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTD 138 (266)
T ss_dssp -------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT-TEEEEEE
T ss_pred CCCCCCCEEEEEECCCCCCCEEEEEECCCE-EEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCC-CEEEEEC
T ss_conf 788876148998489998546898642652-89995489999857648953788872799883369998003-9488712
Q ss_pred -ECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCC-CCEEEEE
Q ss_conf -67994999965899823685089991799999799998999963379983399997899926899527778-7447999
Q 002494 518 -AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK-RSLGVVQ 595 (915)
Q Consensus 518 -~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~ 595 (915)
+..+.|...+++...........-.....+++.+.++.|..+.. ..+.|...++.............. .....++
T Consensus 139 ~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~la 215 (266)
T d1ijqa1 139 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLA 215 (266)
T ss_dssp CSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTTTTSSEEEEE
T ss_pred CCCCCCEEEECCCCCCEECCCCCCCCEEEEEEEECCCCEEEEECC---CCCEEEEEECCCCCEEEEEECCCCCCCCEEEE
T ss_conf 699730268636888344120045320169986133569999528---96799999899997799993898556647999
Q ss_pred ECCCCCEEEEE-ECCCCEEEEECCCCCEEEEECC
Q ss_conf 85999999999-6899199996999914799717
Q 002494 596 FDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDA 628 (915)
Q Consensus 596 ~sp~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 628 (915)
+. +..++.+ ..++.|+..+..++.....+..
T Consensus 216 v~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 216 VF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp EE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred EE--CCEEEEEECCCCEEEEEECCCCCCEEEEEC
T ss_conf 98--999999989999699999989961599776
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.11 E-value=0.0046 Score=31.87 Aligned_cols=12 Identities=8% Similarity=0.044 Sum_probs=6.4
Q ss_pred EECCCCEEEEEC
Q ss_conf 712997599851
Q 002494 848 LSKNDSYVMSAS 859 (915)
Q Consensus 848 ~S~dg~~L~s~s 859 (915)
+.+||+.|+.|+
T Consensus 351 l~~dG~v~v~GG 362 (387)
T d1k3ia3 351 LLPDGRVFNGGG 362 (387)
T ss_dssp ECTTSCEEEEEC
T ss_pred ECCCCEEEEEEC
T ss_conf 988999999969
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.08 E-value=0.0049 Score=31.69 Aligned_cols=121 Identities=7% Similarity=0.084 Sum_probs=60.0
Q ss_pred EEEEEC-CCCEEEEECC-CCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECC
Q ss_conf 999947-7909999869-98400246605653266763210101477754849999958999899998898599999048
Q 002494 362 LLVGTN-VGDISLWEVG-SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (915)
Q Consensus 362 l~~gs~-dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~~ 439 (915)
+++++. ++.|...|.. +|+.+ |............... ....-..+++. +..++.++.++.+.-.|.++
T Consensus 65 vyv~t~~~~~v~Alda~~tG~~~-------W~~~~~~~~~~~~~~~-~~~~~rg~a~~--~~~i~~~~~~g~l~alda~t 134 (571)
T d2ad6a1 65 MYVHSAFPNNTYALNLNDPGKIV-------WQHKPKQDASTKAVMC-CDVVDRGLAYG--AGQIVKKQANGHLLALDAKT 134 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEE-------EEECCCCCGGGGGGCT-TCSCCCCCEEE--TTEEEEECTTSEEEEEETTT
T ss_pred EEEECCCCCEEEEEECCCCCCEE-------EEECCCCCCCCCCCCC-CCCCCCCCEEE--CCEEEEEECCCCEEEEEHHH
T ss_conf 99942879959999489998668-------8835888865442002-47688862650--88699991797578210021
Q ss_pred CCCEEEEEEEECCC-CCEEEEEEECCCCEEEEEEEE------CCCCEEEEECCCCEEEEEECC
Q ss_conf 98323347753345-776689991699907999991------899199999679906789618
Q 002494 440 TGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG------DDKMIKVWDVVAGRKQYTFEG 495 (915)
Q Consensus 440 ~~~~~~~~~~~~h~-~~v~~i~~s~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~ 495 (915)
++..........+. ..++..-.-.++. ++.+. .+|.|+-+|+.+++.+.++..
T Consensus 135 G~~~w~~~~~~~~~~~~~t~~p~v~~~~---vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 194 (571)
T d2ad6a1 135 GKINWEVEVCDPKVGSTLTQAPFVAKDT---VLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEETTE---EEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred HHHHCCCCCCCCCCCCCEEECCEEECCE---EEEEECCCCCCCCCCEEEEECCCCCEEEEEEC
T ss_conf 1220234445544324145367575885---88850234423467479998889858899704
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.88 E-value=0.0074 Score=30.52 Aligned_cols=21 Identities=5% Similarity=0.052 Sum_probs=12.1
Q ss_pred EEEEECCCCEEEEECCCCCEE
Q ss_conf 999947790999986998400
Q 002494 362 LLVGTNVGDISLWEVGSRERL 382 (915)
Q Consensus 362 l~~gs~dg~i~iwd~~~~~~~ 382 (915)
++.++.+|.+.-.|.++|+.+
T Consensus 118 i~~~~~~g~l~alda~tG~~~ 138 (571)
T d2ad6a1 118 IVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEE
T ss_pred EEEEECCCCEEEEEHHHHHHH
T ss_conf 999917975782100211220
|
| >d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=96.68 E-value=0.00044 Score=38.55 Aligned_cols=103 Identities=19% Similarity=0.273 Sum_probs=72.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC------
Q ss_conf 65455322147899998899998703697899999998400011469888999987622223223222255699------
Q 002494 62 KVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD------ 135 (915)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~------ 135 (915)
+.-..++. .++|+++.|+||||+..+. .+|..++.+.-..+...+.+++.+|+.+.++.++.+++....+++
T Consensus 20 d~yK~EL~-~lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~nKy~I~ 97 (134)
T d2j49a1 20 EIYKPELS-YIMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRIT 97 (134)
T ss_dssp TTTHHHHH-HHHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEE
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 86699999-9899999999999997587-999999999607777899999999875899999976588999873995889
Q ss_pred -CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -55789999999998753196753457788877148999999989
Q 002494 136 -TKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSL 179 (915)
Q Consensus 136 -~~~~R~~l~~~l~~~i~~~~~~~~~~~~~~~p~~rL~~ll~qal 179 (915)
+..+-..|+..|++--. .--+-+..++++.+
T Consensus 98 ms~~s~~lLl~fL~~~~~-------------~g~~~il~ii~~~l 129 (134)
T d2j49a1 98 MSKTTLNLLLYFLNENES-------------IGGSLIISVINQHL 129 (134)
T ss_dssp ECHHHHHHHHHHHHHTGG-------------GTHHHHHHHHHHHE
T ss_pred ECHHHHHHHHHHHHHCCC-------------CHHHHHHHHHHHHC
T ss_conf 768999999999986663-------------11789999999840
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.59 E-value=0.012 Score=29.19 Aligned_cols=89 Identities=9% Similarity=0.074 Sum_probs=42.3
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCC
Q ss_conf 9833999978999268995277787447999859999999996-899199996999914799717999998354999599
Q 002494 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (915)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~ 643 (915)
.++.++++|..+++.+..........+ ..+...+..+.... .++ ......+....+...-..++++|+
T Consensus 335 k~G~l~~lDr~tGe~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------~~~~~~~pg~~Gg~~w~~~a~dp~ 403 (573)
T d1kb0a2 335 KNGFFFVLDRTNGKFISAKNFVPVNWA--SGYDKHGKPIGIAAARDG---------SKPQDAVPGPYGAHNWHPMSFNPQ 403 (573)
T ss_dssp TTSEEEEEETTTCCEEEEEESSCCSSE--EEECTTSCEEECGGGGCT---------TSCEECSSCTTCSSCSSCCEEETT
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCC--CCCCCCCCEEEEEECCCC---------CCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 553168861243442231122566434--442112200000002346---------663378631567766655420887
Q ss_pred CCEEEEEECCCCEEEEECCCC
Q ss_conf 999999958995999986998
Q 002494 644 GSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 644 ~~~l~s~~~dg~i~iwd~~~~ 664 (915)
..+++....+....++.....
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~ 424 (573)
T d1kb0a2 404 TGLVYLPAQNVPVNLMDDKKW 424 (573)
T ss_dssp TTEEEEEEEECCCEEEECTTC
T ss_pred CCEEEEECCCCCEEEECCCCC
T ss_conf 616985411154253115553
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.49 E-value=0.014 Score=28.77 Aligned_cols=74 Identities=11% Similarity=0.070 Sum_probs=37.5
Q ss_pred EEEEEECCCCCEEEEEECC-CEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECC------CCEEEEE
Q ss_conf 4999995899989999889-85999990489832334775334577668999169990799999189------9199999
Q 002494 411 VNRCVWGPDGLMLGVAFSK-HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWD 483 (915)
Q Consensus 411 v~~i~~spd~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d------~~i~iwd 483 (915)
....++.++++.++.|+.+ ..+.+||..+..-.. ..... ....-..++..+++. +++.++.+ ..+.+||
T Consensus 78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~-~~r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd 153 (387)
T d1k3ia3 78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQ-VARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYS 153 (387)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCS-SCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEE
T ss_pred EEEEEEECCCCEEEEECCCCCCEEEECCCCCCCCC-CCCCC-CCCCCCCEEEECCCC--EEEECCCCCCCCCCCEEEEEC
T ss_conf 56899946886898636888621675675574421-56566-421013035531782--665213663335432056634
Q ss_pred CCCCE
Q ss_conf 67990
Q 002494 484 VVAGR 488 (915)
Q Consensus 484 ~~~~~ 488 (915)
..+.+
T Consensus 154 ~~~~~ 158 (387)
T d1k3ia3 154 PSSKT 158 (387)
T ss_dssp TTTTE
T ss_pred CCCCC
T ss_conf 88895
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.48 E-value=0.014 Score=28.73 Aligned_cols=98 Identities=9% Similarity=0.066 Sum_probs=57.6
Q ss_pred EEEEEECCCCCEEEEEEECCC----CEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 799999179993999994779----0999986998400246605653266763210101477754849999958999899
Q 002494 349 VMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (915)
Q Consensus 349 V~~i~fspd~~~ll~~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~ 424 (915)
+...++|||+++++++-+.+| .++++|+.+++.+... + .......++|.+|++.|.
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i-------------------~~~~~~~~~W~~D~~~~~ 186 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-L-------------------ERVKFSCMAWTHDGKGMF 186 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-E-------------------EEECSCCEEECTTSSEEE
T ss_pred ECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCC-C-------------------CCCCCCCEEECCCCCEEE
T ss_conf 34258537898799995566672104677416764031442-2-------------------243236417857998999
Q ss_pred EEECC----------------CEEEEEEECCCCCEEEEEEEECCC--CCEEEEEEECCCCE
Q ss_conf 99889----------------859999904898323347753345--77668999169990
Q 002494 425 VAFSK----------------HIVHLYTYNPTGELRQHLEIDAHV--GGVNDIAFAHPNKQ 467 (915)
Q Consensus 425 s~~~d----------------g~i~iwd~~~~~~~~~~~~~~~h~--~~v~~i~~s~~~~~ 467 (915)
....+ ..|..+.+.+...-. ...+.... ..+..+..+.+++.
T Consensus 187 Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~ 246 (430)
T d1qfma1 187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRY 246 (430)
T ss_dssp EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCE
T ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC-CCCCCCCCCCCEEEEEECCCCCCE
T ss_conf 997626667654433345786338999889886531-002232357725775302687624
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.48 E-value=0.014 Score=28.72 Aligned_cols=22 Identities=9% Similarity=-0.061 Sum_probs=12.4
Q ss_pred CCCCEEEEEECCCEEEEEECCC
Q ss_conf 1885287831255158765255
Q 002494 782 NSGLSLLALASNAVHKLWKWQR 803 (915)
Q Consensus 782 ~d~~~l~~~~~dg~v~iW~l~~ 803 (915)
..+..+++++.||.++.+|...
T Consensus 482 TagglVF~G~~Dg~l~A~Da~T 503 (596)
T d1w6sa_ 482 TAGDLVFYGTLDGYLKARDSDT 503 (596)
T ss_dssp ETTTEEEEECTTSEEEEEETTT
T ss_pred ECCCEEEEECCCCEEEEEECCC
T ss_conf 6699799978999599999999
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.23 E-value=0.019 Score=27.83 Aligned_cols=61 Identities=13% Similarity=0.229 Sum_probs=36.7
Q ss_pred CCCCEEEEEECCCCCEEEEEEC-----CCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEE
Q ss_conf 7548499999589998999988-----98599999048983233477533457766899916999079999
Q 002494 407 AAISVNRCVWGPDGLMLGVAFS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472 (915)
Q Consensus 407 h~~~v~~i~~spd~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s 472 (915)
+.-.+...++|||+++++.+-. ...+++.|+.+++.+.. .+. ......+.|.+++.. ++++
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~--~~~~~~~~W~~D~~~-~~Y~ 188 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGKG-MFYN 188 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSSE-EEEE
T ss_pred CCCEECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCC--CCC--CCCCCCEEECCCCCE-EEEE
T ss_conf 44133425853789879999556667210467741676403144--222--432364178579989-9999
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.97 E-value=0.025 Score=27.02 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=15.6
Q ss_pred EEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 4999599999999958995999986998
Q 002494 637 RLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 637 ~i~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
++..++.-..+...+.-|.++++|+.++
T Consensus 260 amqvs~kygiiyviTK~G~i~lyDleTg 287 (327)
T d1utca2 260 AMQISEKHDVVFLITKYGYIHLYDLETG 287 (327)
T ss_dssp EEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred EEEEECCCCEEEEEECCCEEEEEECCCC
T ss_conf 9996433799999966758999975666
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.44 E-value=0.04 Score=25.71 Aligned_cols=65 Identities=6% Similarity=-0.016 Sum_probs=33.8
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCE
Q ss_conf 4479998599999999968991999969999147997179999983549995999999999589959
Q 002494 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (915)
Q Consensus 590 ~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i 656 (915)
..-++..++....++..+.-|.+++||+.++.++..-..... .|...+-+.+..-++....+|.|
T Consensus 257 FPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~--~iF~~a~~~~~~Gi~~VNr~GqV 321 (327)
T d1utca2 257 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQV 321 (327)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTSEE
T ss_pred CEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC--CEEEECCCCCCCEEEEECCCCEE
T ss_conf 477999643379999996675899997566628999404788--44896267888608998789769
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.77 E-value=0.062 Score=24.46 Aligned_cols=251 Identities=10% Similarity=-0.002 Sum_probs=107.3
Q ss_pred EEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCC
Q ss_conf 99999477909999869984002466056532667632101014777548499999589998999988985999990489
Q 002494 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT 440 (915)
Q Consensus 361 ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~~~ 440 (915)
.+++++.++.|.-.|..+|+.+ |................... .++. .+..++.++.++.+.-.|..++
T Consensus 70 ~vy~~t~~~~v~AlDa~TG~~l-------W~~~~~~~~~~~~~~~~~~r---g~a~--~~~~i~~~t~~~~l~alda~tG 137 (582)
T d1flga_ 70 VIYVTASYSRLFALDAKTGKRL-------WTYNHRLPDDIRPCCDVVNR---GAAI--YGDKVFFGTLDASVVALNKNTG 137 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEE-------EEEECCCCTTCCCSSCSCCC---CCEE--ETTEEEEEETTTEEEEEESSSC
T ss_pred EEEEECCCCEEEEEECCCCCEE-------EEECCCCCCCCCCCCCCCCC---CCEE--ECCCEEEECCCCEEEEECCCCC
T ss_conf 9999689995999968999868-------88768898765533344467---7458--6781588648874998116666
Q ss_pred CCEEEEEEEECCC-C---CEEEEEEEC--CCCEEEEEEE------ECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECC
Q ss_conf 8323347753345-7---766899916--9990799999------18991999996799067896188998789972037
Q 002494 441 GELRQHLEIDAHV-G---GVNDIAFAH--PNKQLCIVTC------GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508 (915)
Q Consensus 441 ~~~~~~~~~~~h~-~---~v~~i~~s~--~~~~~~l~s~------~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 508 (915)
+.+-.. .+..+. . .-.-..+.+ .+.. .++.+ +..+.+.-+|..+++.+.++.........+...
T Consensus 138 ~~~W~~-~~~~~~~~~~~~~~p~~~~~~~~~~~-~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~-- 213 (582)
T d1flga_ 138 KVVWKK-KFADHGAGYTMTGAPTIVKDGKTGKV-LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGK-- 213 (582)
T ss_dssp CEEEEE-ECSCGGGTCBCCSCCEEEECTTTCCE-EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTE--
T ss_pred CEEEEE-CCCCCCCCCEEECCCEEECCCCEEEE-EEEECCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCC--
T ss_conf 302111-02477766124038667048847579-99907665434654634872388886789871217865622466--
Q ss_pred CCCCEEEEEECCCEEEEEECCCCC-CEEEECCCCC-CEEEEEECCCCCEEEEEEECC------------------C--CC
Q ss_conf 994199999679949999658998-2368508999-179999979999899996337------------------9--98
Q 002494 509 ESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGN-WCTMMAYSADGTRLFSCGTSK------------------E--GE 566 (915)
Q Consensus 509 ~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~-~i~~i~~sp~g~~l~~~~~~~------------------~--~~ 566 (915)
+ -.+.+.......-.+..... ....+..... .-..+++.+....++...... + -.
T Consensus 214 -d--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys 290 (582)
T d1flga_ 214 -D--STVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYT 290 (582)
T ss_dssp -E--EEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTC
T ss_pred -C--CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -6--5333432344577754555577640205898622542003566458964578653334434567877676432221
Q ss_pred CEEEEEECCCCEEEEEECCCCCC----------CEEEEEECCCC--CEEEEEECCCCEEEEECCCCCEEEEECCCC
Q ss_conf 33999978999268995277787----------44799985999--999999689919999699991479971799
Q 002494 567 SHLVEWNESEGAIKRTYSGFRKR----------SLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630 (915)
Q Consensus 567 ~~i~iwd~~~~~~~~~~~~~~~~----------~v~~~~~sp~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (915)
..+.-.|..+++....++..... .+..+...+.. ..++..+.++.+++.|..+++.+.......
T Consensus 291 ~SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~ 366 (582)
T d1flga_ 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVD 366 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSS
T ss_pred CEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 2058733553133211332235531232234433234332344554235750464407862466873022235667
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.05 E-value=0.021 Score=27.62 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC--HHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 489999999987460789999999986099976--68899999737989999987288
Q 002494 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKHFEDQVQAGEWDEVERYLCGF 60 (915)
Q Consensus 5 ~~ev~rli~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~G~w~~~~~~l~~~ 60 (915)
.+|+.+=|++||..+||.+++.+|++|.++.++ ...-..-.|+-.|..++.+-.++
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkKI 64 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV 64 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999999888299999999987789870466640372125899899999999
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.41 E-value=0.21 Score=21.09 Aligned_cols=22 Identities=9% Similarity=0.144 Sum_probs=11.2
Q ss_pred CCCCEEEEEECCCEEEEEECCC
Q ss_conf 1885287831255158765255
Q 002494 782 NSGLSLLALASNAVHKLWKWQR 803 (915)
Q Consensus 782 ~d~~~l~~~~~dg~v~iW~l~~ 803 (915)
..+..+++++.|+.++.+|...
T Consensus 495 tagglVF~Gt~dg~l~A~Da~T 516 (582)
T d1flga_ 495 TAGNLVFTGTGDGYFKAFDAKS 516 (582)
T ss_dssp ETTTEEEEECTTSEEEEEETTT
T ss_pred ECCCEEEEECCCCEEEEEECCC
T ss_conf 7698699967999699999999
|