Citrus Sinensis ID: 002498

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-----

MDTASENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASMT

ccccccccccEEEEEccccccHHHHccccEEEEEEccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEEEEEEEEccHHccccccccccccccccccccccccccccccEEEEcccccEEEccccEEEcccHHHHHHHHHHcccccccccccccccccccccEEEEEEEEEccccccccccccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccHHHHHcccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc

cccccccccEEEEEEEccccHHHHHccccEEEEEEccccEEEEcccEEEEEEEEccccccHHHHHHHHcHHHHHHHHccccEEEEEEccccccHHHHHcEcccccccEcHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEccEEEEccccccccEcEccccccccccccccccEEEEEccccccEEccccHHEEcccEEEcccccEEEccHHHHHHHHHHHHHHcccccccHHHHHHHcEEEEEEEEEEEEcccccEEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHcHHHHHcHHHcccccEEEEEEEEccEHHHHHHHHHHHHHHHHHHccEccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHcHHHHEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccHHHHHcHHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc

mdtasencsvKVAVHvrpligderaqGCKECVAvthgnpqvqigthsftfdhvygnggspssamfgecVAPLVDGLFQGYNATVLAygqtgsgktytmgtglregfqtglIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSksvtanghagkvsisgrppiqiressngvitlAGSTEVAVNTLQEMAACLEQgslsratgstnmnnqssrsHAIFTITLEQMRKLhsvspdngtpdedmdeEYFCAKLHLVDlagserakrtgsdglrlkegiHINRGLLALGNVISALgdekkrregvhvpyrdskLTRLLQdslggnsktVMIACispadinaeESLNTLKYANRarniqnkpvvnrdlISSDMQKLRQQLKYLQAELCaraggapsdeVQVLKGRIAWLEATNEDLCQELHEYRSRRavvehcgtdaqegpvsfvksdglkrgfqsidssdyqmdeavsdgnsSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLaansdghtqkmqdghTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSsarensvnstgyttptgqsnEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVdqlslnghspqrgknghsrlsslspnaRMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASMT

mdtasencsvkvavhvrpligdERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSksvtanghagkvsisgrppiqiressnGVITLAGSTEVAVNTLQEMAACLEQGSLSRATgstnmnnqssrSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLvdlagserakrtgsdglrlkegihinrglLALGNVISAlgdekkrregvhvpyrdskltrllqdslggnsKTVMIACISPADINAEESLNTLKYAnrarniqnkpvvnrdLISSDMQKLRQQLKYLQAELCARaggapsdeVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHcgtdaqegpvsfvksdglkRGFQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLaansdghtqkMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKlkkegrkneferhklealnqrqkMVLQRKTEEAAIATKRLKELLEarkssarensvnstgyttptgqsNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLnghspqrgknghsrlsslspnaRMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASMT

MDTASENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDsvsvsksvTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASRekellklkkeGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASMT

*******CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSV****************************GVITLAGSTEVAVNTLQEMAACL***********************IFTITL**********************EYFCAKLHLVDLAG**********GLRLKEGIHINRGLLALGNVISALGD******GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGT***********************************************WEHALWQ***********************FGDIDTEALRHHFGKKIM*********************************************************************************************************************************************************************************************WLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQV*************************************************************ALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALL********************************

*****EN**VKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS*******GKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK******************YFCAKLHLVDLAGSERA******GLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQL*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************N*********************************FMGDAKNLLQYMFNV*************************************************************

********SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGFQSIDSSDYQ*************EEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQE*****************RLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEA**************************LQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGH***************SPNARMERIASLENMLNMSSKALV**************ALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQ************QAVTIALASSASMT

*******CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVT*****GK*****RPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAG***********LRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGF*SIDSSDYQMD*****GNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIA********E*R*********************NEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQ*********************************EN*LNMS**ALVE**S*LSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALA******

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MDTASENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNxxxxxxxxxxxxxxxxxxxxxLCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHALWxxxxxxxxxxxxxxxxxxxxxxxxxxxxDTEALRHHFGKKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxREKELLKxxxxxxxxxxxxxxxxxxxxxQKMVxxxxxxxxxxxxxxxxxxxxxRKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTExxxxxxxxxxxxxxxxxxxxxxxxxxxxQRMREQAVTIALASSASMT

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		915	2.2.26 [Sep-21-2011]
O95239		1232	Chromosome-associated kin	yes	no	0.890	0.661	0.373	1e-138
Q91784		1226	Chromosome-associated kin	N/A	no	0.903	0.674	0.371	1e-135
P33174		1231	Chromosome-associated kin	yes	no	0.859	0.638	0.374	1e-133
Q2VIQ3		1234	Chromosome-associated kin	no	no	0.898	0.666	0.361	1e-129
Q90640		1225	Chromosome-associated kin	yes	no	0.900	0.672	0.359	1e-124
Q7Z4S6		1674	Kinesin-like protein KIF2	no	no	0.413	0.225	0.496	1e-102
Q9QXL1		1668	Kinesin-like protein KIF2	no	no	0.409	0.224	0.496	1e-101
O75037		1637	Kinesin-like protein KIF2	no	no	0.413	0.230	0.491	1e-101
Q9QXL2		1672	Kinesin-like protein KIF2	no	no	0.413	0.226	0.489	1e-100
Q86VH2		1401	Kinesin-like protein KIF2	no	no	0.403	0.263	0.452	2e-89

>sp\|O95239\|KIF4A_HUMAN Chromosome-associated kinesin KIF4A OS=Homo sapiens GN=KIF4A PE=1 SV=3	Back alignment and function desciption

 Score =  491 bits (1265), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 356/952 (37%), Positives = 515/952 (54%), Gaps = 137/952 (14%)

Query: 10  VKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGT-HSFTFDHVYGNGGSPSSAMFGEC 68
           V+VA+  RPL+  E ++GC+ C++   G PQV +GT  SFT+D V+ +  +    +F   
Sbjct: 10  VRVALRCRPLVPKEISEGCQMCLSFVPGEPQVVVGTDKSFTYDFVF-DPSTEQEEVFNTA 68

Query: 69  VAPLVDGLFQGYNATVLAYGQTGSGKTYTMG---TGLREGFQT-GLIPQVMNALFNKIET 124
           VAPL+ G+F+GYNATVLAYGQTGSGKTY+MG   T  +E   T G+IP+V+  LF +I+ 
Sbjct: 69  VAPLIKGVFKGYNATVLAYGQTGSGKTYSMGGAYTAEQENEPTVGVIPRVIQLLFKEIDK 128

Query: 125 LRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGV 184
            +   EF L VS++EI  EE+ DLL                      +  I IRE     
Sbjct: 129 -KSDFEFTLKVSYLEIYNEEILDLL-----------------CPSREKAQINIREDPKEG 170

Query: 185 ITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVS 244
           I + G TE  V    +  +CLEQG+ SR   ST MN+QSSRSHAIFTI+LEQ +K    S
Sbjct: 171 IKIVGLTEKTVLVALDTVSCLEQGNNSRTVASTAMNSQSSRSHAIFTISLEQRKK----S 226

Query: 245 PDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISAL 304
             N +         F +KLHLVDLAGSER K+T ++G RLKEGI+INRGLL LGNVISAL
Sbjct: 227 DKNSS---------FRSKLHLVDLAGSERQKKTKAEGDRLKEGININRGLLCLGNVISAL 277

Query: 305 GDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364
           GD+KK   G  VPYRDSKLTRLLQDSLGGNS T+MIAC+SPAD N EE+LNTL+YA+RAR
Sbjct: 278 GDDKK---GGFVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNLEETLNTLRYADRAR 334

Query: 365 NIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGA--------PSDEVQVL------ 410
            I+NKP+VN D  ++++  L+QQ++ LQ  L    GG         PS+ +Q L      
Sbjct: 335 KIKNKPIVNIDPQTAELNHLKQQVQQLQVLLLQAHGGTLPGSITVEPSENLQSLMEKNQS 394

Query: 411 ---------KG-------------RIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEG 448
                    +G             RI   E  NE +  +L E R   A    C  D Q+ 
Sbjct: 395 LVEENEKLSRGLSEAAGQTAQMLERIILTEQANEKMNAKLEELRQHAA----CKLDLQKL 450

Query: 449 PVSFVKSDGLKRGFQSI-----------DSSDYQMDEAVSDGNSSEIE-EVAKE------ 490
            V  ++   LK   + I           D +   M  A+      E + E + E      
Sbjct: 451 -VETLEDQELKENVEIICNLQQLITQLSDETVACMAAAIDTAVEQEAQVETSPETSRSSD 509

Query: 491 ---WEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDT--EALRHHFGKKIMELEEEKR 545
               +HAL Q  M KEL ELNK L  KE+  +     D+  + +++ +   I ELE E  
Sbjct: 510 AFTTQHALRQAQMSKELVELNKALALKEALARKMTQNDSQLQPIQYQYQDNIKELELEVI 569

Query: 546 IVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKH 605
            +Q+E++ L+ E++   A  D +  K+ +    +L+ LE QI +LKKK   Q +LLK K 
Sbjct: 570 NLQKEKEELVLELQ--TAKKDANQAKLSERRRKRLQELEGQIADLKKKLNEQSKLLKLKE 627

Query: 606 KSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERH 665
            ++    +L  EI+ +K Q+VQL  ++K++AE+FRQWK  ++KE+++LK+  RK ++E  
Sbjct: 628 STERTVSKLNQEIRMMKNQRVQLMRQMKEDAEKFRQWKQKKDKEVIQLKERDRKRQYELL 687

Query: 666 KLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSA-RENSVNSTGYTTPTGQSNEKS 724
           KLE   Q+Q  VL+RKTEEAA A KRLK+ L+ ++  A +     S G      +     
Sbjct: 688 KLERNFQKQSNVLRRKTEEAAAANKRLKDALQKQREVADKRKETQSRGMEGTAAR----- 742

Query: 725 LQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHS 784
           ++ WL +E+EV  +  E +        +   L D   + + V QL     S   G+N   
Sbjct: 743 VKNWLGNEIEVMVSTEEAK------RHLNDLLEDRKILAQDVAQLKEKKES---GENPPP 793

Query: 785 RLS-------------SLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVG 831
           +L              S S ++  ++I SLE  +   S  + ++  +L +AE  +R    
Sbjct: 794 KLRRRTFSLTEVRGQVSESEDSITKQIESLETEMEFRSAQIADLQQKLLDAESEDRP--- 850

Query: 832 RGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALL 883
           + RW ++  + +AK  L+Y+      ++ Q+ + ++ +K+ K    D+  +L
Sbjct: 851 KQRWENIATILEAKCALKYLIGELVSSKIQVSKLESSLKQSKTSCADMQKML 902

Motor protein that translocates PRC1 to the plus ends of interdigitating spindle microtubules during the metaphase to anaphase transition, an essential step for the formation of an organized central spindle midzone and midbody and for successful cytokinesis. May play a role in mitotic chromosomal positioning and bipolar spindle stabilization.
Homo sapiens (taxid: 9606)

>sp\|Q91784\|KIF4_XENLA Chromosome-associated kinesin KIF4 OS=Xenopus laevis GN=kif4 PE=2 SV=1	Back alignment and function description

>sp\|P33174\|KIF4_MOUSE Chromosome-associated kinesin KIF4 OS=Mus musculus GN=Kif4 PE=2 SV=3	Back alignment and function description

>sp\|Q2VIQ3\|KIF4B_HUMAN Chromosome-associated kinesin KIF4B OS=Homo sapiens GN=KIF4B PE=2 SV=2	Back alignment and function description

>sp\|Q90640\|KIF4_CHICK Chromosome-associated kinesin KIF4 OS=Gallus gallus GN=KIF4 PE=2 SV=1	Back alignment and function description

>sp\|Q7Z4S6\|KI21A_HUMAN Kinesin-like protein KIF21A OS=Homo sapiens GN=KIF21A PE=1 SV=2	Back alignment and function description

>sp\|Q9QXL1\|KI21B_MOUSE Kinesin-like protein KIF21B OS=Mus musculus GN=Kif21b PE=1 SV=2	Back alignment and function description

>sp\|O75037\|KI21B_HUMAN Kinesin-like protein KIF21B OS=Homo sapiens GN=KIF21B PE=1 SV=2	Back alignment and function description

>sp\|Q9QXL2\|KI21A_MOUSE Kinesin-like protein KIF21A OS=Mus musculus GN=Kif21a PE=1 SV=2	Back alignment and function description

>sp\|Q86VH2\|KIF27_HUMAN Kinesin-like protein KIF27 OS=Homo sapiens GN=KIF27 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		915
296082375		1032	unnamed protein product [Vitis vinifera]	0.991	0.878	0.816	0.0
359480793		1031	PREDICTED: chromosome-associated kinesin	0.990	0.878	0.816	0.0
255585095		1028	Chromosome-associated kinesin KLP1, puta	0.986	0.878	0.807	0.0
255538224		1067	Kinesin heavy chain, putative [Ricinus c	0.992	0.850	0.789	0.0
302142281		1077	unnamed protein product [Vitis vinifera]	0.991	0.842	0.795	0.0
359492582		1071	PREDICTED: chromosome-associated kinesin	0.990	0.845	0.795	0.0
147790676		1094	hypothetical protein VITISV_001140 [Viti	0.990	0.828	0.779	0.0
224096722		1036	predicted protein [Populus trichocarpa]	0.984	0.869	0.794	0.0
449447023		1050	PREDICTED: chromosome-associated kinesin	0.991	0.863	0.769	0.0
224067254		1055	predicted protein [Populus trichocarpa]	0.975	0.846	0.770	0.0

>gi\|296082375\|emb\|CBI21380.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1529 bits (3959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 743/910 (81%), Positives = 825/910 (90%), Gaps = 3/910 (0%)

Query: 4   ASENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSA 63
           A ENCSVKVAVH+RPLIGDER QGC++CV V HG PQVQIGTHSFTFDHVYGN GSPSSA
Sbjct: 3   APENCSVKVAVHIRPLIGDERLQGCEDCVTVVHGKPQVQIGTHSFTFDHVYGNSGSPSSA 62

Query: 64  MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIE 123
           MF EC+APLVDGLFQGYNATVLAYGQTGSGKTYTMGTG ++G QTGLIPQ MNALFNKIE
Sbjct: 63  MFEECIAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGCQTGLIPQAMNALFNKIE 122

Query: 124 TLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNG 183
           TL+HQ EFQLHVSFIEILKEEVRDLL+S +VSK    NGHA ++++ GRPPIQIRE+SNG
Sbjct: 123 TLKHQSEFQLHVSFIEILKEEVRDLLESPTVSKPEATNGHAARIAVPGRPPIQIRETSNG 182

Query: 184 VITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243
           VITLAGSTEV+V+TL+EMA+CLEQGS SRATGSTNMNNQSSRSHAIFTI+LEQMRKLH  
Sbjct: 183 VITLAGSTEVSVSTLKEMASCLEQGSFSRATGSTNMNNQSSRSHAIFTISLEQMRKLHPT 242

Query: 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISA 303
            P +   +E+M EEY  AKLHLVDLAGSERAKRTGSDGLR KEGIHIN+GLLALGNVISA
Sbjct: 243 FPGDNCSNEEMGEEYLSAKLHLVDLAGSERAKRTGSDGLRFKEGIHINKGLLALGNVISA 302

Query: 304 LGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRA 363
           LGDEKKR+EGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEE+LNTLKYANRA
Sbjct: 303 LGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEETLNTLKYANRA 362

Query: 364 RNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNED 423
           RNIQNKPVVNRDL+S++MQK+RQQL+YLQAELCAR GG  SDE+QVLK RI+WLE TNE+
Sbjct: 363 RNIQNKPVVNRDLVSNEMQKMRQQLEYLQAELCARRGGTSSDEMQVLKERISWLETTNEE 422

Query: 424 LCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSE 483
           LC+ELHEYRSR AVV  C ++AQEG + FVK+DGLKRG QS++SSDY M E +S  +S E
Sbjct: 423 LCRELHEYRSRCAVVGQCESNAQEGSICFVKTDGLKRGLQSMESSDYPMGEVISGEDSRE 482

Query: 484 IEEV-AKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEE 542
           ++EV A+EWEHAL QNTMDKELNELNKRLEQKESEMKLFG  DTEAL+ HFGKKIMELEE
Sbjct: 483 MDEVAAREWEHALLQNTMDKELNELNKRLEQKESEMKLFGG-DTEALKQHFGKKIMELEE 541

Query: 543 EKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLK 602
           EKRIVQQERDRLLAE+E+LAA SDG  QK+QD H  KLKALEAQIL+LKKKQE+QV+LLK
Sbjct: 542 EKRIVQQERDRLLAEVESLAATSDGQRQKVQDVHAQKLKALEAQILDLKKKQENQVQLLK 601

Query: 603 QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEF 662
           QK KSDEA KRLQ EIQSIKAQKVQLQ+KIKQEAEQFRQWKASREKELL+LKKEGR+NE+
Sbjct: 602 QKQKSDEATKRLQDEIQSIKAQKVQLQHKIKQEAEQFRQWKASREKELLQLKKEGRRNEY 661

Query: 663 ERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNE 722
           ERHKL+ALNQRQKMVLQRKTEEAA+ATKRLKELLEARKSSAR+NSV S G+ TPTG +NE
Sbjct: 662 ERHKLQALNQRQKMVLQRKTEEAAVATKRLKELLEARKSSARDNSVYSNGH-TPTGLNNE 720

Query: 723 KSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNG 782
           KSLQ+WL+HELEV  NVHEVRF+YEKQSQV+AALA+EL +LKQVDQLSLNG SP RGKNG
Sbjct: 721 KSLQRWLDHELEVMVNVHEVRFEYEKQSQVRAALAEELGLLKQVDQLSLNGLSPPRGKNG 780

Query: 783 HSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMG 842
           HSR+SS+SPNAR+ RIA+LENMLN+SS ALV MASQLSEAEERERA  GRGRWN LR MG
Sbjct: 781 HSRMSSMSPNARLARIATLENMLNISSNALVAMASQLSEAEERERAFTGRGRWNQLRSMG 840

Query: 843 DAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQ 902
           DAKNLLQYMFN A + R QLWEK+ EIKE+KEQLN+LV LL+QSEAQRKE+VK+Q++REQ
Sbjct: 841 DAKNLLQYMFNAAGDARCQLWEKEMEIKEMKEQLNELVILLRQSEAQRKEIVKEQKLREQ 900

Query: 903 AVTIALASSA 912
           AV IALA+SA
Sbjct: 901 AVAIALATSA 910

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359480793\|ref\|XP_002278379.2\| PREDICTED: chromosome-associated kinesin KIF4-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255585095\|ref\|XP_002533253.1\| Chromosome-associated kinesin KLP1, putative [Ricinus communis] gi\|223526909\|gb\|EEF29115.1\| Chromosome-associated kinesin KLP1, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|255538224\|ref\|XP_002510177.1\| Kinesin heavy chain, putative [Ricinus communis] gi\|223550878\|gb\|EEF52364.1\| Kinesin heavy chain, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|302142281\|emb\|CBI19484.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359492582\|ref\|XP_002282968.2\| PREDICTED: chromosome-associated kinesin KIF4A-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147790676\|emb\|CAN61020.1\| hypothetical protein VITISV_001140 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224096722\|ref\|XP_002310712.1\| predicted protein [Populus trichocarpa] gi\|222853615\|gb\|EEE91162.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449447023\|ref\|XP_004141269.1\| PREDICTED: chromosome-associated kinesin KIF4A-like [Cucumis sativus] gi\|449523834\|ref\|XP_004168928.1\| PREDICTED: chromosome-associated kinesin KIF4A-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224067254\|ref\|XP_002302432.1\| predicted protein [Populus trichocarpa] gi\|222844158\|gb\|EEE81705.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		915
TAIR\|locus:2160912		1035	FRA1 "FRAGILE FIBER 1" [Arabid	0.987	0.873	0.721	0.0
TAIR\|locus:2074855		1051	KICP-02 [Arabidopsis thaliana	0.981	0.854	0.694	0.0
TAIR\|locus:2173537		1294	AT5G60930 [Arabidopsis thalian	0.793	0.561	0.440	3e-144
UNIPROTKB\|O95239		1232	KIF4A "Chromosome-associated k	0.657	0.488	0.330	2.7e-108
UNIPROTKB\|K7GQ60		1210	KIF4A "Uncharacterized protein	0.660	0.499	0.325	4e-108
MGI\|MGI:109234		1668	Kif21b "kinesin family member	0.413	0.226	0.496	4.5e-108
UNIPROTKB\|F1RTL0		1234	KIF4A "Uncharacterized protein	0.660	0.489	0.325	4.7e-108
UNIPROTKB\|F1PDX5		1234	KIF4A "Uncharacterized protein	0.659	0.488	0.325	4.3e-107
MGI\|MGI:108389		1231	Kif4 "kinesin family member 4"	0.657	0.489	0.324	5.1e-107
UNIPROTKB\|E9PSJ3		1231	Kif4 "Protein Kif4" [Rattus no	0.657	0.489	0.327	5.1e-107

TAIR\|locus:2160912 FRA1 "FRAGILE FIBER 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3308 (1169.5 bits), Expect = 0., P = 0.
 Identities = 659/914 (72%), Positives = 764/914 (83%)

Query:     6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMF 65
             ++CSVKVAVH+RPLIGDER QGC++CV V  G PQVQIG+HSFTFDHVYG+ GSPS+ M+
Sbjct:     8 DDCSVKVAVHIRPLIGDERIQGCQDCVTVVTGKPQVQIGSHSFTFDHVYGSSGSPSTEMY 67

Query:    66 GECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETL 125
              EC APLVDGLFQGYNATVLAYGQTGSGKTYTMGTG  +  QTG+IPQVMNALF KIETL
Sbjct:    68 EECAAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGCGDSSQTGIIPQVMNALFTKIETL 127

Query:   126 RHQMEFQLHVSFIEILKEEVRDLLDXXXXXXXXTAN-GHAGKVS-ISGRPPIQIRESSNG 183
             + Q+EFQ+HVSFIEI KEEV+DLLD        T N GH GKV+ + G+PPIQIRE+SNG
Sbjct:   128 KQQIEFQIHVSFIEIHKEEVQDLLDPCTVNKSDTNNTGHVGKVAHVPGKPPIQIRETSNG 187

Query:   184 VITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243
             VITLAGSTEV+V+TL+EMAACL+QGS+SRATGSTNMNNQSSRSHAIFTIT+EQMRK+++ 
Sbjct:   188 VITLAGSTEVSVSTLKEMAACLDQGSVSRATGSTNMNNQSSRSHAIFTITVEQMRKINTD 247

Query:   244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISA 303
             SP+NG  +  + EEY CAKLHLVDLAGSERAKRTGSDGLR KEG+HIN+GLLALGNVISA
Sbjct:   248 SPENGAYNGSLKEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISA 307

Query:   304 LGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRA 363
             LGDEKKR++G HVPYRDSKLTRLLQDSLGGNS+TVMIACISPADINAEE+LNTLKYANRA
Sbjct:   308 LGDEKKRKDGAHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRA 367

Query:   364 RNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNED 423
             RNI+NKPVVNRD +SS+M K+RQQ++YLQAEL  R GG+   EVQ LK RI WLE  NE+
Sbjct:   368 RNIRNKPVVNRDPVSSEMLKMRQQVEYLQAELSLRTGGSSCAEVQALKERIVWLETANEE 427

Query:   424 LCQELHEYRSRRAVVEHCGTDAQE----GPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDG 479
             LC+ELHEYRSR   VEH   D ++      V  V+ DGLKR   SI+SS+Y M EA + G
Sbjct:   428 LCRELHEYRSRCPGVEHSEKDFKDIRADDIVGSVRPDGLKRSLHSIESSNYPMVEATT-G 486

Query:   480 NSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIME 539
             +S EI+E AKEWEH L QN+MDKEL ELN+RLE+KESEMKLF   D  AL+ HFGKKI E
Sbjct:   487 DSREIDEEAKEWEHKLLQNSMDKELYELNRRLEEKESEMKLFDGYDPAALKQHFGKKIAE 546

Query:   540 LEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVE 599
             +E+EKR VQ+ER+RLLAEIENLA  SDG  QK+QD H   LKALEAQIL+LKKKQESQV+
Sbjct:   547 VEDEKRSVQEERNRLLAEIENLA--SDGQAQKLQDVHAQNLKALEAQILDLKKKQESQVQ 604

Query:   600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASRXXXXXXXXXXGRK 659
             LLKQK KSD+AA+RLQ EIQSIKAQKVQLQ+++KQEAEQFRQWKASR          GRK
Sbjct:   605 LLKQKQKSDDAARRLQDEIQSIKAQKVQLQHRMKQEAEQFRQWKASREKELLQLRKEGRK 664

Query:   660 NEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQ 719
             +E+ERHKL+ALNQRQKMVLQRKTEEAA+ATKRLKELLEARKSS RE+S  + G+ T  GQ
Sbjct:   665 SEYERHKLQALNQRQKMVLQRKTEEAAMATKRLKELLEARKSSPREHSAGTNGFGT-NGQ 723

Query:   720 SNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRG 779
             +NEKSLQ+WL+HELEV  NVHEVR +YEKQS V+AALA+EL +L+QVD+ ++ G SP RG
Sbjct:   724 TNEKSLQRWLDHELEVMVNVHEVRHEYEKQSHVRAALAEELAVLRQVDEFAVKGLSPPRG 783

Query:   780 KNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLR 839
             KNG +R SSLSPNARM RI+SLENML +SS +LV MASQLSEAEERERA   RGRWN LR
Sbjct:   784 KNGFARASSLSPNARMARISSLENMLVISSNSLVAMASQLSEAEERERAFTNRGRWNQLR 843

Query:   840 FMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRM 899
              MG+AKNLLQYMFN  AETR QLWEKD EIKE+K+Q  ++V LL+QSE +RKE  K+ ++
Sbjct:   844 SMGEAKNLLQYMFNSLAETRCQLWEKDVEIKEMKDQFKEIVGLLRQSELRRKEAEKELKL 903

Query:   900 REQAVTIALASSAS 913
             REQA+  +L +  S
Sbjct:   904 REQAIATSLGTPPS 917

GO:0003777 "microtubule motor activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010215 "cellulose microfibril organization" evidence=IMP

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR\|locus:2074855 KICP-02 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2173537 AT5G60930 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|O95239 KIF4A "Chromosome-associated kinesin KIF4A" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|K7GQ60 KIF4A "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:109234 Kif21b "kinesin family member 21B" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RTL0 KIF4A "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PDX5 KIF4A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:108389 Kif4 "kinesin family member 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PSJ3 Kif4 "Protein Kif4" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		915
cd01372		341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	0.0
smart00129		335	smart00129, KISc, Kinesin motor, catalytic domain	1e-136
pfam00225		326	pfam00225, Kinesin, Kinesin motor domain	1e-130
cd00106		328	cd00106, KISc, Kinesin motor domain	1e-122
cd01365		356	cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K	1e-108
cd01370		338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	1e-107
cd01371		333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	1e-102
cd01364		352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	1e-100
cd01366		329	cd01366, KISc_C_terminal, Kinesin motor domain, KI	5e-99
cd01369		325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	1e-98
cd01374		321	cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E	5e-95
cd01367		322	cd01367, KISc_KIF2_like, Kinesin motor domain, KIF	2e-85
COG5059		568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	1e-77
cd01373		337	cd01373, KISc_KLP2_like, Kinesin motor domain, KLP	7e-76
cd01375		334	cd01375, KISc_KIF9_like, Kinesin motor domain, KIF	5e-73
cd01368		345	cd01368, KISc_KIF23_like, Kinesin motor domain, KI	3e-67
cd01376		319	cd01376, KISc_KID_like, Kinesin motor domain, KIF2	6e-65
PLN03188		1320	PLN03188, PLN03188, kinesin-12 family protein; Pro	2e-63
cd01363		186	cd01363, Motor_domain, Myosin and Kinesin motor do	4e-37
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-09
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-09
cd01363		186	cd01363, Motor_domain, Myosin and Kinesin motor do	1e-08
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-08
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-07
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-06
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	3e-05
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	4e-05
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	6e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-05
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	1e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
COG4942		420	COG4942, COG4942, Membrane-bound metallopeptidase	2e-04
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-04
pfam13868		349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	6e-04
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	7e-04
PRK12704		520	PRK12704, PRK12704, phosphodiesterase; Provisional	7e-04
PRK11448		1123	PRK11448, hsdR, type I restriction enzyme EcoKI su	8e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
TIGR03545		555	TIGR03545, TIGR03545, TIGR03545 family protein	0.003
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PRK00409		782	PRK00409, PRK00409, recombination and DNA strand e	0.004

>gnl\|CDD\|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily	Back alignment and domain information

 Score =  559 bits (1443), Expect = 0.0
 Identities = 218/364 (59%), Positives = 257/364 (70%), Gaps = 27/364 (7%)

Query: 8   CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGT-HSFTFDHVYGNGGSPSSAMFG 66
            SV+VAV VRPL+  E  +GC+ CV+V  G PQV +GT  SFTFD+V+    S    ++ 
Sbjct: 1   SSVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPSTSQE-EVYN 59

Query: 67  ECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGF---QTGLIPQVMNALFNKIE 123
            CVAPLVDGLF+GYNATVLAYGQTGSGKTYTMGT         + G+IP+ +  +F KI+
Sbjct: 60  TCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKID 119

Query: 124 TLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNG 183
             + + +FQL VSF+E+  EEVRDLL                  S S + PIQIRE S G
Sbjct: 120 EKKDEPDFQLKVSFLELYNEEVRDLLSP----------------STSEKSPIQIREDSKG 163

Query: 184 VITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243
            I + G TEV VN+ QE+ +CLEQGSLSR T ST MN+QSSRSHAIFTITLEQ RK   +
Sbjct: 164 NIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPI 223

Query: 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISA 303
           +P +G    D       +K H VDLAGSER K+TG+ G RLKEGI IN GLLALGNVISA
Sbjct: 224 APMSG----DDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISA 279

Query: 304 LGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRA 363
           LGDE K+  G HVPYRDSKLTRLLQDSLGGNS T+MIAC+SPAD N EE+LNTLKYANRA
Sbjct: 280 LGDESKK--GSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRA 337

Query: 364 RNIQ 367
           RNI+
Sbjct: 338 RNIK 341

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 341

>gnl\|CDD\|214526 smart00129, KISc, Kinesin motor, catalytic domain	Back alignment and domain information

>gnl\|CDD\|215803 pfam00225, Kinesin, Kinesin motor domain	Back alignment and domain information

>gnl\|CDD\|238054 cd00106, KISc, Kinesin motor domain	Back alignment and domain information

>gnl\|CDD\|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins	Back alignment and domain information

>gnl\|CDD\|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup	Back alignment and domain information

>gnl\|CDD\|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins	Back alignment and domain information

>gnl\|CDD\|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division	Back alignment and domain information

>gnl\|CDD\|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins	Back alignment and domain information

>gnl\|CDD\|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup	Back alignment and domain information

>gnl\|CDD\|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis	Back alignment and domain information

>gnl\|CDD\|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group	Back alignment and domain information

>gnl\|CDD\|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>gnl\|CDD\|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup	Back alignment and domain information

>gnl\|CDD\|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling	Back alignment and domain information

>gnl\|CDD\|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup	Back alignment and domain information

>gnl\|CDD\|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup	Back alignment and domain information

>gnl\|CDD\|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional	Back alignment and domain information

>gnl\|CDD\|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|237177 PRK12704, PRK12704, phosphodiesterase; Provisional	Back alignment and domain information

>gnl\|CDD\|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|234252 TIGR03545, TIGR03545, TIGR03545 family protein	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		915
KOG0244		913	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0243		1041	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0245		1221	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG4280		574	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0240		607	consensus Kinesin (SMY1 subfamily) [Cytoskeleton]	100.0
PLN03188		1320	kinesin-12 family protein; Provisional	100.0
KOG0241		1714	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0242		675	consensus Kinesin-like protein [Cytoskeleton]	100.0
cd01373		337	KISc_KLP2_like Kinesin motor domain, KLP2-like sub	100.0
cd01370		338	KISc_KIP3_like Kinesin motor domain, KIP3-like sub	100.0
cd01368		345	KISc_KIF23_like Kinesin motor domain, KIF23-like s	100.0
cd01365		356	KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p	100.0
cd01364		352	KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind	100.0
cd01372		341	KISc_KIF4 Kinesin motor domain, KIF4-like subfamil	100.0
cd01371		333	KISc_KIF3 Kinesin motor domain, kinesins II or KIF	100.0
cd01367		322	KISc_KIF2_like Kinesin motor domain, KIF2-like gro	100.0
cd01369		325	KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy	100.0
cd01376		319	KISc_KID_like Kinesin motor domain, KIF22/Kid-like	100.0
cd01374		321	KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like	100.0
cd01375		334	KISc_KIF9_like Kinesin motor domain, KIF9-like sub	100.0
cd01366		329	KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/	100.0
smart00129		335	KISc Kinesin motor, catalytic domain. ATPase. Micr	100.0
KOG0239		670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	100.0
KOG0246		676	consensus Kinesin-like protein [Cytoskeleton]	100.0
KOG0247		809	consensus Kinesin-like protein [Cytoskeleton]	100.0
PF00225		335	Kinesin: Kinesin motor domain; InterPro: IPR001752	100.0
cd00106		328	KISc Kinesin motor domain. This catalytic (head) d	100.0
COG5059		568	KIP1 Kinesin-like protein [Cytoskeleton]	100.0
cd01363		186	Motor_domain Myosin and Kinesin motor domain. Thes	100.0
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	99.95
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	99.4
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.31
PRK02224		880	chromosome segregation protein; Provisional	98.87
PRK03918		880	chromosome segregation protein; Provisional	98.86
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	98.8
PRK02224		880	chromosome segregation protein; Provisional	98.75
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	98.59
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	98.49
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	98.49
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	98.49
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	98.46
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	98.39
PRK03918		880	chromosome segregation protein; Provisional	98.37
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.35
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	98.35
PF00038		312	Filament: Intermediate filament protein; InterPro:	98.26
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	98.26
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	98.22
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	98.19
KOG0971		1243	consensus Microtubule-associated protein dynactin	98.1
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	98.05
PF00038		312	Filament: Intermediate filament protein; InterPro:	98.03
COG5059		568	KIP1 Kinesin-like protein [Cytoskeleton]	98.01
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	97.98
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	97.97
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	97.94
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	97.9
PRK01156		895	chromosome segregation protein; Provisional	97.84
KOG4673		961	consensus Transcription factor TMF, TATA element m	97.82
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	97.78
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	97.73
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	97.72
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	97.69
KOG0964		1200	consensus Structural maintenance of chromosome pro	97.67
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.66
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	97.66
KOG0971		1243	consensus Microtubule-associated protein dynactin	97.64
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	97.62
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.61
PRK11637		428	AmiB activator; Provisional	97.55
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	97.52
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	97.52
PRK04778		569	septation ring formation regulator EzrA; Provision	97.5
PRK11637		428	AmiB activator; Provisional	97.47
KOG0996		1293	consensus Structural maintenance of chromosome pro	97.47
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	97.34
PRK04863		1486	mukB cell division protein MukB; Provisional	97.33
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	97.32
KOG0964		1200	consensus Structural maintenance of chromosome pro	97.3
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.22
KOG4673		961	consensus Transcription factor TMF, TATA element m	97.17
PRK01156		895	chromosome segregation protein; Provisional	97.07
KOG0999		772	consensus Microtubule-associated protein Bicaudal-	97.05
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	97.04
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	96.95
KOG0933		1174	consensus Structural maintenance of chromosome pro	96.93
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	96.92
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.82
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	96.73
KOG0996		1293	consensus Structural maintenance of chromosome pro	96.69
PRK04778		569	septation ring formation regulator EzrA; Provision	96.55
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	96.48
PHA02562		562	46 endonuclease subunit; Provisional	96.45
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.36
PHA02562		562	46 endonuclease subunit; Provisional	96.34
COG4942		420	Membrane-bound metallopeptidase [Cell division and	96.27
PRK04863		1486	mukB cell division protein MukB; Provisional	96.27
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	96.1
KOG0933		1174	consensus Structural maintenance of chromosome pro	95.84
COG4942		420	Membrane-bound metallopeptidase [Cell division and	95.76
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.7
PF10481		307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	95.57
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.54
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	95.52
KOG2129		552	consensus Uncharacterized conserved protein H4 [Fu	95.45
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.38
KOG0018		1141	consensus Structural maintenance of chromosome pro	95.36
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	94.8
COG2805		353	PilT Tfp pilus assembly protein, pilus retraction	94.77
KOG0963		629	consensus Transcription factor/CCAAT displacement	94.67
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	94.45
PF15066		527	CAGE1: Cancer-associated gene protein 1 family	94.42
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	94.27
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	94.05
COG3883		265	Uncharacterized protein conserved in bacteria [Fun	94.04
PF14662		193	CCDC155: Coiled-coil region of CCDC155	94.0
KOG0018		1141	consensus Structural maintenance of chromosome pro	93.93
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	93.87
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.8
PF00308		219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	93.79
PF15066		527	CAGE1: Cancer-associated gene protein 1 family	93.71
PRK06893		229	DNA replication initiation factor; Validated	93.71
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	93.64
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	93.62
KOG2129		552	consensus Uncharacterized conserved protein H4 [Fu	93.52
PF15254		861	CCDC14: Coiled-coil domain-containing protein 14	93.36
PRK09039		343	hypothetical protein; Validated	93.19
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	93.14
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	93.05
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	93.04
PRK06620		214	hypothetical protein; Validated	92.9
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	92.7
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	92.64
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	92.55
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	92.16
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	92.11
PF14988		206	DUF4515: Domain of unknown function (DUF4515)	92.11
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	91.83
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	91.78
KOG1003		205	consensus Actin filament-coating protein tropomyos	91.77
PRK09087		226	hypothetical protein; Validated	91.76
PRK09039		343	hypothetical protein; Validated	91.42
PRK11281		1113	hypothetical protein; Provisional	91.42
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	91.15
COG2804		500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	91.14
PRK14086		617	dnaA chromosomal replication initiation protein; P	91.01
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	90.91
PF05911		769	DUF869: Plant protein of unknown function (DUF869)	90.86
PRK05642		234	DNA replication initiation factor; Validated	90.09
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	90.05
PF09787		511	Golgin_A5: Golgin subfamily A member 5; InterPro:	89.85
PRK14088		440	dnaA chromosomal replication initiation protein; P	89.6
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	89.44
COG1474		366	CDC6 Cdc6-related protein, AAA superfamily ATPase	89.43
KOG4593		716	consensus Mitotic checkpoint protein MAD1 [Cell cy	89.37
COG0593		408	DnaA ATPase involved in DNA replication initiation	89.06
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	88.87
COG5008		375	PilU Tfp pilus assembly protein, ATPase PilU [Cell	88.83
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	88.62
KOG0999		772	consensus Microtubule-associated protein Bicaudal-	88.55
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	88.44
PF13245		76	AAA_19: Part of AAA domain	88.31
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	88.13
KOG4593		716	consensus Mitotic checkpoint protein MAD1 [Cell cy	87.96
COG4372		499	Uncharacterized protein conserved in bacteria with	87.96
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	87.94
PRK06526		254	transposase; Provisional	87.76
PF08826		61	DMPK_coil: DMPK coiled coil domain like; InterPro:	87.75
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	87.72
PRK08084		235	DNA replication initiation factor; Provisional	87.72
PRK00149		450	dnaA chromosomal replication initiation protein; R	87.66
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	87.59
PRK12377		248	putative replication protein; Provisional	87.5
KOG1899		861	consensus LAR transmembrane tyrosine phosphatase-i	87.42
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	87.35
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	87.26
PF00437		270	T2SE: Type II/IV secretion system protein; InterPr	87.19
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	87.12
TIGR00362		405	DnaA chromosomal replication initiator protein Dna	87.05
TIGR01420		343	pilT_fam pilus retraction protein PilT. This model	87.03
PRK08727		233	hypothetical protein; Validated	87.0
PRK14087		450	dnaA chromosomal replication initiation protein; P	86.89
COG4372		499	Uncharacterized protein conserved in bacteria with	86.43
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	86.11
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	86.02
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	85.95
PRK08116		268	hypothetical protein; Validated	85.94
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	85.84
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	85.74
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	85.6
KOG4809		654	consensus Rab6 GTPase-interacting protein involved	85.45
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	85.18
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	85.18
PF14915		305	CCDC144C: CCDC144C protein coiled-coil region	85.15
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	85.13
PRK07952		244	DNA replication protein DnaC; Validated	85.02
PF00769		246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	85.01
PRK08903		227	DnaA regulatory inactivator Hda; Validated	84.89
PRK10436		462	hypothetical protein; Provisional	84.84
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	84.74
PRK00411		394	cdc6 cell division control protein 6; Reviewed	84.41
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	84.38
TIGR02533		486	type_II_gspE general secretory pathway protein E.	84.24
cd01131		198	PilT Pilus retraction ATPase PilT. PilT is a nucle	84.22
TIGR02524		358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	84.19
PF14988		206	DUF4515: Domain of unknown function (DUF4515)	84.16
TIGR02538		564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	84.0
PF05673		249	DUF815: Protein of unknown function (DUF815); Inte	83.91
TIGR02525		372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	83.82
smart00053		240	DYNc Dynamin, GTPase. Large GTPases that mediate v	83.58
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	83.43
PRK06835		329	DNA replication protein DnaC; Validated	83.27
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	83.24
PF09738		302	DUF2051: Double stranded RNA binding protein (DUF2	82.93
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	82.9
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	82.72
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	82.65
PF14992		280	TMCO5: TMCO5 family	82.51
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	82.18
TIGR02782		299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	82.04
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	81.88
KOG4360		596	consensus Uncharacterized coiled coil protein [Fun	81.85
smart00382		148	AAA ATPases associated with a variety of cellular	81.73
PRK10929		1109	putative mechanosensitive channel protein; Provisi	81.62
PRK08181		269	transposase; Validated	81.1
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	80.98
PF07111		739	HCR: Alpha helical coiled-coil rod protein (HCR);	80.86
PF10146		230	zf-C4H2: Zinc finger-containing protein ; InterPro	80.71
cd01129		264	PulE-GspE PulE/GspE The type II secretory pathway	80.28
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	80.22
PF13514		1111	AAA_27: AAA domain	80.22
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	80.01

>KOG0244 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

Probab=100.00  E-value=3.2e-113  Score=984.00  Aligned_cols=819  Identities=42%  Similarity=0.566  Sum_probs=699.8

Q ss_pred             cCCCCcchhhcCCceEEEEeCCCcceeecC-eEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCc
Q 002498           16 VRPLIGDERAQGCKECVAVTHGNPQVQIGT-HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGK   94 (915)
Q Consensus        16 vRP~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGK   94 (915)
                      |||+..+|...||+.|+.+.|+.|+|.+++ .+|+||+||++. +.|..+|+.||.|+++.+|.|||+||+|||||||||
T Consensus         1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~~~s~t~d~v~~~~-~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgk   79 (913)
T KOG0244|consen    1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGKDASFTYDKVFLDL-ESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGK   79 (913)
T ss_pred             CCCccchHHHhcchhhcccCCCCCceeecCCcceeeeeeccCc-hHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCc
Confidence            699999999999999999999999999976 689999999864 559999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCc-cccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccCCcccccccccCCCCCccccCCCC
Q 002498           95 TYTMGTGLREGFQ-TGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRP  173 (915)
Q Consensus        95 T~Tm~g~~~~~~~-~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~  173 (915)
                      ||||++++..... .|+|||++.++|..|..... ..|.|.|||+|||++.|+|||.|..                 ...
T Consensus        80 Tytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~-----------------~~~  141 (913)
T KOG0244|consen   80 TYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSR-----------------LKA  141 (913)
T ss_pred             eeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhh-----------------hhh
Confidence            9999988654444 59999999999999998654 7899999999999999999998643                 234


Q ss_pred             CceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccCCCCCCCCCCC
Q 002498          174 PIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDED  253 (915)
Q Consensus       174 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~~~  253 (915)
                      ++.+++ +.|++.+.|+++++|.+..+++.+|..|...|++++|+||.+|||||+||+|++++......           
T Consensus       142 ~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~-----------  209 (913)
T KOG0244|consen  142 NIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK-----------  209 (913)
T ss_pred             ceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-----------
Confidence            578888 88999999999999999999999999999999999999999999999999999998765432           


Q ss_pred             CCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCCCcccCCCCcchhhhhhcCCC
Q 002498          254 MDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGG  333 (915)
Q Consensus       254 ~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyrdSkLT~lL~dsLgG  333 (915)
                        ...++++|||||||||||.++|++.|+|++||++||.+|++|||||++|++.++   +.|||||||||||||||+|||
T Consensus       210 --~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk---~~~vpyRdSkltrlLQdslgG  284 (913)
T KOG0244|consen  210 --RSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK---GGEVPYRDSKLTRLLQDSLGG  284 (913)
T ss_pred             --cchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc---CCcccchHHHHHHHHHHHhcC
Confidence              336789999999999999999999999999999999999999999999999875   679999999999999999999


Q ss_pred             CceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 002498          334 NSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGR  413 (915)
Q Consensus       334 ns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~iknkp~vn~d~~~~~i~~L~~ei~~Lk~eL~~~~~~~~~~~~~~l~~~  413 (915)
                      |+.|+||+||||++.|+.||++||+||+||++|+|+|++|.|+...+|..|+.+|+.|+.+|....+.....++..+..+
T Consensus       285 ns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e  364 (913)
T KOG0244|consen  285 NSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFE  364 (913)
T ss_pred             CcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999866544455789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC-Cccccch------------hhHhhhhcccCCccchhhhc---cc
Q 002498          414 IAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEG-PVSFVKS------------DGLKRGFQSIDSSDYQMDEA---VS  477 (915)
Q Consensus       414 i~~L~~e~~~L~~eL~e~~~~~~~l~e~~~~~q~~-~~~~~k~------------~eLe~~l~~~~~~d~~l~e~---~~  477 (915)
                      +..++..+..+..++.+....|.....+...++.. +.+....            ....+....+.....+++..   ..
T Consensus       365 ~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~v~~~~~e~~  444 (913)
T KOG0244|consen  365 NVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLLSEDSNEDASDKSASLPKPLEPVDSGTEEIG  444 (913)
T ss_pred             hhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHHHHhHhHHhhhccccCCcccccccccccccc
Confidence            99999999999999988888775544443333211 0000000            00111100011000111110   00


Q ss_pred             -----CCCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498          478 -----DGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGD--IDTEALRHHFGKKIMELEEEKRIVQQE  550 (915)
Q Consensus       478 -----~~~~~~le~ee~~~~~~~~q~~l~~el~eL~~~Le~kE~~~~kl~~--~~~~~~~~~~~~ki~~Le~ei~~le~e  550 (915)
                           .+.++........+.+...+.++..++.+++.+|+.++..+++...  ......+.+|+.....|+.++..++.|
T Consensus       445 ~~~~~~~~e~~~~~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E  524 (913)
T KOG0244|consen  445 MNTDTSGDEAAEKELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESE  524 (913)
T ss_pred             ccccCCCchhhhcccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccc
Confidence                 1222222233556778888889999999999999999999998775  456678899999999999999999999


Q ss_pred             HHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002498          551 RDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQN  630 (915)
Q Consensus       551 ~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~  630 (915)
                      ++++..++..+..    ...|+.++|.++|+.||.+++.|++....+..|.+.+.+.+.....|..+|..+|.++|+|++
T Consensus       525 ~~~l~~el~~~~~----~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~  600 (913)
T KOG0244|consen  525 RSRLRNELNVFNR----LAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLR  600 (913)
T ss_pred             cHHHHHHHHhhhH----HHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988642    678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCC
Q 002498          631 KIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNS  710 (915)
Q Consensus       631 ~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~  710 (915)
                      +|++++++|+.|+...+||.++|++++++.++++.+++...++|..||+|+++|+.+++++|++++..++..+...  ..
T Consensus       601 ~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~eas~~~krlk~a~~~r~~~~s~~--~~  678 (913)
T KOG0244|consen  601 VMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEEASAANKRLKEALCIRALTSSGQ--VT  678 (913)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--cc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999887542211  11


Q ss_pred             CCCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCcccccccCC
Q 002498          711 TGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLS  790 (915)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~~L~~~~e~~~~~~~~~~~~~~~~~~~~l~  790 (915)
                      -+.++    ........|+..|+++...+.+++.+|..+++.|+.+..++..++...                       
T Consensus       679 ~~~~~----~~~~~~~~~~~~e~ei~~~~~~~~~~l~~~~~~ra~~~~d~~~~r~~~-----------------------  731 (913)
T KOG0244|consen  679 LGDNG----ASTSRTVAWPSNEIEINQIALNPRGTLLYAAEERAVRMWDLKRLRSEG-----------------------  731 (913)
T ss_pred             hhhcC----chhHHHHHHhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence            11111    223567999999999999999999999999999999999999887742                       


Q ss_pred             hhHHHHHHHHHHHHHhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHH-------
Q 002498          791 PNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLW-------  863 (915)
Q Consensus       791 ~~~~~~qi~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~eak~~l~~l~~~~~~~~~ql~-------  863 (915)
                          ...|..|+..++....+|.++...+..+..+.....   +|+++.++.+|++.+.++|+.++..+.+..       
T Consensus       732 ----~k~l~~L~~~~~~~~~~i~s~~~~i~~a~~d~~~~~---~w~~v~t~~~ak~~~~~~~~~~~~~r~~~~~~~~~~r  804 (913)
T KOG0244|consen  732 ----KKLLGSLEPVMELTSDQISSMQDLIITASKDERIKM---RWEAVGTLSEAKNFEPYLYDGIVALRIQGDNLFSGSR  804 (913)
T ss_pred             ----HHHHhhhHHHHHHHHHHHHhHHhhhcccccchhHHH---HHhcccccccchhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence                267788889999999999999998888877765333   999999999999999999999999999888       


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002498          864 EKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALAS  910 (915)
Q Consensus       864 ~~~~~l~e~~~~~~~l~~~~~~~e~e~~~l~~~~~~~~~~~~~l~~~  910 (915)
                      +....+.++..++...+..++..+.+..+...+..-..+....+...
T Consensus       805 e~~~~~~~l~~kl~~~q~~~rk~e~~~~~~v~e~~~~~~~~~~~~~~  851 (913)
T KOG0244|consen  805 EKGIKKWDLTQKLLDEQVNLRKDEVQALGVVPEHPVLLSGCKGGILK  851 (913)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            45666778888888888888888888888766666666665555443

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG0245 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG4280 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]	Back alignment and domain information

>PLN03188 kinesin-12 family protein; Provisional	Back alignment and domain information

>KOG0241 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG0242 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup	Back alignment and domain information

>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup	Back alignment and domain information

>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup	Back alignment and domain information

>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins	Back alignment and domain information

>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division	Back alignment and domain information

>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily	Back alignment and domain information

>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins	Back alignment and domain information

>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group	Back alignment and domain information

>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup	Back alignment and domain information

>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup	Back alignment and domain information

>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis	Back alignment and domain information

>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling	Back alignment and domain information

>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins	Back alignment and domain information

>smart00129 KISc Kinesin motor, catalytic domain	Back alignment and domain information

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	Back alignment and domain information

>KOG0246 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>KOG0247 consensus Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport	Back alignment and domain information

>cd00106 KISc Kinesin motor domain	Back alignment and domain information

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>cd01363 Motor_domain Myosin and Kinesin motor domain	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PF15066 CAGE1: Cancer-associated gene protein 1 family	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication	Back alignment and domain information

>PF15066 CAGE1: Cancer-associated gene protein 1 family	Back alignment and domain information

>PRK06893 DNA replication initiation factor; Validated	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]	Back alignment and domain information

>PF15254 CCDC14: Coiled-coil domain-containing protein 14	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK06620 hypothetical protein; Validated	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>PF14988 DUF4515: Domain of unknown function (DUF4515)	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]	Back alignment and domain information

>PRK09087 hypothetical protein; Validated	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PRK11281 hypothetical protein; Provisional	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PRK14086 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants	Back alignment and domain information

>PRK05642 DNA replication initiation factor; Validated	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure	Back alignment and domain information

>PRK14088 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PRK12377 putative replication protein; Provisional	Back alignment and domain information

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>TIGR00362 DnaA chromosomal replication initiator protein DnaA	Back alignment and domain information

>TIGR01420 pilT_fam pilus retraction protein PilT	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>PRK14087 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>PF14915 CCDC144C: CCDC144C protein coiled-coil region	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK07952 DNA replication protein DnaC; Validated	Back alignment and domain information

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []	Back alignment and domain information

>PRK08903 DnaA regulatory inactivator Hda; Validated	Back alignment and domain information

>PRK10436 hypothetical protein; Provisional	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PRK00411 cdc6 cell division control protein 6; Reviewed	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>TIGR02533 type_II_gspE general secretory pathway protein E	Back alignment and domain information

>cd01131 PilT Pilus retraction ATPase PilT	Back alignment and domain information

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB	Back alignment and domain information

>PF14988 DUF4515: Domain of unknown function (DUF4515)	Back alignment and domain information

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB	Back alignment and domain information

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function	Back alignment and domain information

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ	Back alignment and domain information

>smart00053 DYNc Dynamin, GTPase	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>PRK06835 DNA replication protein DnaC; Validated	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PF14992 TMCO5: TMCO5 family	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>PRK10929 putative mechanosensitive channel protein; Provisional	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins	Back alignment and domain information

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

Homologous Structure Templates