Citrus Sinensis ID: 002513

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910----

MDHQRSSLGNGEDNGGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKRRAANSALRASLKKAKRKSLGESDIYLESKSDDYDMPLVNMKNNDYPSVSGKKTLEKVSKSHFRYSPETPPTRGMSARNPLKANDDSQRDVAEYEENLRSYKTPPHSGMDSSRNRSQRSFDPSPTMEYSEGSMNSSEDTGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIKVRIREIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVELEKKLRGNEIDLARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDLREASTSVGKEEFSENDRIQDTENASEQVKTSKLRLNLLEKFPGWKANNDGSIPCPPNEYGGCGYRSLNLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETLLNTGSYDHSLCQYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQRKLFQEVFSPLLSLKLLCSL

ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHHHHcccccccccccccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHcccccccccccEEEEEcccccEEEcHHHHHHccccccccccccccccccccccccccHHHHHHHHcHHHHHHccccccccccccccccccccccccccccccccEEEEEcccccccccccccccEEEEcccHHHHHHHccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEccccEEEEcccccccccccccccEEEccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

cccccccccccccccccccHccccccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccHcccccccccccccccccccccccccccccEcccccccEEEEcccccccccHHHHHHHcccccHHHHHHHcccccccccccHHEcccccEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccEEEccccccEEEEccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEccccccccccHHcccccccEEEEHHcccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHccccccccEEEcccccccccccHHHHHHHHHccccEEEEcHHHccccccccHHHHHHHHHHcccccccccccEEEEEEccccEEEEEcHHHHHccccccccccccccEEEEcccccccHHHHHHccHHHHHHHHHcccccccccccccEEEEEEcccccccccccccEEEEEcccccccccccccEEEEcHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEccHccHHHHHHHHHHHHHHHccccccccccEEccccccEEEEcHHHHHHHHHHHccccEEEEEccccEEEEcccccHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

mdhqrsslgngednggipddlrckrsdgkqwrctamsmpdktvCEKHYIQAKRRAANSALRASLKKAKrkslgesdiylesksddydmplvnmknndypsvsgkktLEKVSKshfryspetpptrgmsarnplkanddsqrDVAEYEENlrsyktpphsgmdssrnrsqrsfdpsptmeysegsmnssedtggqichqcrrndreRVVWCVkcdkrgycdscistwysdipleelekvcpacrgscnckaclradnMIKVRIREIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVELEKKLRGNEIDLARAKLSADEQMCCnicripiidyhrhcgncmydlclSCCQDLREAstsvgkeefsendriqdtenaSEQVKTSKLRLNLLekfpgwkanndgsipcppneyggcgyrslnlSRIFKMNWVAKLVKNVEEMVsgckvcdsetllntgsydhslcqyahredrdgnflycpsshdirsegignfrkhwvkgepvivkqvcdsssmsiwdpkdiWRGIREtadektkdeNRIVKaidcldwsEVDIELGEFikgysegrvredgwpemlklkdwpspsaseefllyhkpefisklplLEYIHSRLGFLNvaaklphyslqndvgpkiymsygtyeeldrgnsvknlhfnMPDMVYLLVHMgevklpttedekiqsssresevnesvgdpekvsgegsfpdlslgghdvnnehveksatdedeimedqgvetgtaeektvkserlngysdvsekthpgahwdvfrrqDVPKLIEYLREHwtdfgrpdgvtndfvthplYGEVVYLngdhkrklkeefgvepwsfeqhlgeavfipagcpfqvrnLQSTVQLGldflfpesVGEAVRLAEEIrclpndheAKLQVLEVRQRKLFQEVFSPLLSLKLLCSL

mdhqrsslgngednggipddlrckrsdgkqwrctamsmpdktVCEKHYIQAKRRAANSALRASlkkakrkslgesdiylesksddydmplvnmknndypsvsgKKTLekvskshfryspetpptrgmsarnplkanddsqRDVAEYEenlrsyktpphsgmdssrnrsqrsfdpsPTMEYSEgsmnssedtgGQICHQCRRNDRERVVWCVKCdkrgycdscisTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIKVRIREIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVELEKKLRGNEIDLARaklsadeqMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDLREASTSvgkeefsendriqdtenaseqvktsKLRLNLLEKFpgwkanndgsiPCPPNEYGGCGYRSLNLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETLLNTGSYDHSLCQYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHWVKGEPVIVKqvcdsssmsiwdpkdiwrgiretadektkdenrivkaidcldwsevDIELGEfikgysegrvredgWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLpttedekiqsssresevnesvgdpekvsgegSFPDLSLGGHDVNNEHVeksatdedeimedqgvetgtaeektvkserlngysdvsekthpgahwdvfrRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQRKLFqevfspllslkllcsl

MDHQRSSLGNGEDNGGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQakrraansalraslkkakrkslGESDIYLESKSDDYDMPLVNMKNNDYPSVSGKKTLEKVSKSHFRYSPETPPTRGMSARNPLKANDDSQRDVAEYEENLRSYKTPPHSGMDSSRNRSQRSFDPSPTMEYSEGSMNSSEDTGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIKVRIREIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVELEKKLRGNEIDLARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDLREASTSVGKEEFSENDRIQDTENASEQVKTSKLRLNLLEKFPGWKANNDGSIPCPPNEYGGCGYRSLNLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETLLNTGSYDHSLCQYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQsssresevnesvGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQRKLFQEVFspllslkllcsl

******************************WRCTA******TVCEKHYI*************************************************************************************************************************************************ICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIKVRIREIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVELEKKLRGNEIDLARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDL*********************************RLNLLEKFPGWKANNDGSIPCPPNEYGGCGYRSLNLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETLLNTGSYDHSLCQYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETAD***KDENRIVKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKLKDWP***ASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVK********************************************************************************************GAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQRKLFQEVFSPLLSLKLLC**

***************************************************************************************************************************************************ENLRSYKTPPHSGMDSSRNRSQRSFDPSPTMEYSEGSMNSSEDTGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADN*IK***REIPVLDKLQHLYCLLSAVLPVVKQIHQ******************LARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQ***********************************************ANNDGSIPCPPNEY***********RIF**************************************QYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETAD*****ENRIVKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSS*R*****************GSFPDLSLGG****************************************************AHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQRKLFQEVFSPLLSLKLLCSL

***********EDNGGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQA*********************GESDIYLESKSDDYDMPLVNMKNNDYPSVSGKKTLEKVS****************SARNPLKANDDSQRDVAEYEENLRSYK****************************************ICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIKVRIREIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVELEKKLRGNEIDLARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDLR****************************TSKLRLNLLEKFPGWKANNDGSIPCPPNEYGGCGYRSLNLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETLLNTGSYDHSLCQYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPT**************************GEGSFPDLSLGGHDVNNEHVEKSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQRKLFQEVFSPLLSLKLLCSL

*****************PDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKRRAANSAL*********************************************************************************DVAE*****RSY******************************************CHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIKVRIREIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVELEKKLRGNEIDLARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDLREAS**********************************EKFPGWKANNDGSIPCPPNEYGGCGYRSLNLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETLLNTGSYDHSLCQYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEG*F**LSLGGHDVNNEHVEKSATDEDEIMEDQ**************************THPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQRKLFQEVFSPLLSLKLLCSL

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		914	2.2.26 [Sep-21-2011]
Q7LBC6		1761	Lysine-specific demethyla	yes	no	0.402	0.208	0.312	1e-40
Q6ZPY7		1562	Lysine-specific demethyla	no	no	0.399	0.233	0.312	8e-40
Q6IRB8		1331	Lysine-specific demethyla	N/A	no	0.359	0.247	0.299	8e-38
Q5ZIX8		1325	Lysine-specific demethyla	no	no	0.358	0.247	0.281	4e-37
Q5HZN1		1334	Lysine-specific demethyla	N/A	no	0.359	0.246	0.294	1e-36
Q9Y4C1		1321	Lysine-specific demethyla	no	no	0.358	0.248	0.272	2e-35
Q6PCM1		1323	Lysine-specific demethyla	no	no	0.358	0.247	0.273	4e-35
Q63679		1214	Lysine-specific demethyla	no	no	0.358	0.270	0.270	6e-35
Q15652		2540	Probable JmjC domain-cont	no	no	0.247	0.088	0.258	1e-13
Q69ZK6		2350	Probable JmjC domain-cont	no	no	0.210	0.081	0.282	5e-13

>sp\|Q7LBC6\|KDM3B_HUMAN Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2	Back alignment and function desciption

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 146/467 (31%), Positives = 219/467 (46%), Gaps = 99/467 (21%)

Query: 434  KNVEEMVSGCKVCDSETLLNTGSYDHS-LCQYAHREDRDGNFLYCPSSHDIRSEGIGNFR 492
            K V+EMV G  V D  T        HS LC        DG  L      +  +  I  FR
Sbjct: 1364 KEVKEMVMGLNVLDPHT-------SHSWLC--------DGRLLCLHDPSNKNNWKI--FR 1406

Query: 493  KHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEV-D 551
            + W +G+PV+V  V       +W P        E   ++  D++  V  ++C + + + D
Sbjct: 1407 ECWKQGQPVLVSGVHKKLKSELWKP--------EAFSQEFGDQD--VDLVNCRNCAIISD 1456

Query: 552  IELGEFIKGYSE--GRVR-EDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIH 608
            +++ +F  G+     R+R EDG P +LKLKDWP      + +     + +  LPL EY  
Sbjct: 1457 VKVRDFWDGFEIICKRLRSEDGQPMVLKLKDWPPGEDFRDMMPTRFEDLMENLPLPEYTK 1516

Query: 609  SRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGE 668
             R G LN+A++LP Y ++ D+GPK+Y +YG     DR     NLH ++ D V ++V++G 
Sbjct: 1517 -RDGRLNLASRLPSYFVRPDLGPKMYNAYGLITAEDRRVGTTNLHLDVSDAVNVMVYVG- 1574

Query: 669  VKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDEDE 728
              +P  E                                  G HD   E V K+      
Sbjct: 1575 --IPIGE----------------------------------GAHD---EEVLKT------ 1589

Query: 729  IMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDF 788
                  ++ G A+E  V  +R++   D  EK  PGA W ++  +D  K+ E LR+     
Sbjct: 1590 ------IDEGDADE--VTKQRIH---DGKEK--PGALWHIYAAKDAEKIRELLRK----V 1632

Query: 789  GRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVR 848
            G   G  N     P++ +  YL+   +++L EE+GV+ W+  Q LG+AVFIPAG P QV 
Sbjct: 1633 GEEQGQENPPDHDPIHDQSWYLDQTLRKRLYEEYGVQGWAIVQFLGDAVFIPAGAPHQVH 1692

Query: 849  NLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPN---DHEAKLQVLEV 892
            NL S +++  DF+ PE V    RL +E R L N   +HE KLQV  +
Sbjct: 1693 NLYSCIKVAEDFVSPEHVKHCFRLTQEFRHLSNTHTNHEDKLQVKNI 1739

Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Demethylation of Lys residue generates formaldehyde and succinate. May have tumor suppressor activity.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

>sp\|Q6ZPY7\|KDM3B_MOUSE Lysine-specific demethylase 3B OS=Mus musculus GN=Kdm3b PE=1 SV=2	Back alignment and function description

>sp\|Q6IRB8\|KD3AA_XENLA Lysine-specific demethylase 3A-A OS=Xenopus laevis GN=kdm3a-a PE=2 SV=1	Back alignment and function description

>sp\|Q5ZIX8\|KDM3A_CHICK Lysine-specific demethylase 3A OS=Gallus gallus GN=KDM3A PE=2 SV=1	Back alignment and function description

>sp\|Q5HZN1\|KD3AB_XENLA Lysine-specific demethylase 3A-B OS=Xenopus laevis GN=kdm3a-b PE=2 SV=1	Back alignment and function description

>sp\|Q9Y4C1\|KDM3A_HUMAN Lysine-specific demethylase 3A OS=Homo sapiens GN=KDM3A PE=1 SV=4	Back alignment and function description

>sp\|Q6PCM1\|KDM3A_MOUSE Lysine-specific demethylase 3A OS=Mus musculus GN=Kdm3a PE=1 SV=1	Back alignment and function description

>sp\|Q63679\|KDM3A_RAT Lysine-specific demethylase 3A OS=Rattus norvegicus GN=Kdm3a PE=2 SV=1	Back alignment and function description

>sp\|Q15652\|JHD2C_HUMAN Probable JmjC domain-containing histone demethylation protein 2C OS=Homo sapiens GN=JMJD1C PE=1 SV=2	Back alignment and function description

>sp\|Q69ZK6\|JHD2C_MOUSE Probable JmjC domain-containing histone demethylation protein 2C OS=Mus musculus GN=Jmjd1c PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		914
359487562		946	PREDICTED: uncharacterized protein LOC10	0.973	0.940	0.709	0.0
255542696		923	transcription factor, putative [Ricinus	0.955	0.945	0.724	0.0
224123112		973	predicted protein [Populus trichocarpa]	0.963	0.905	0.669	0.0
224123790		979	predicted protein [Populus trichocarpa]	0.959	0.895	0.667	0.0
356574955		923	PREDICTED: uncharacterized protein LOC10	0.938	0.929	0.650	0.0
357441701		930	PsbP-like protein [Medicago truncatula]	0.949	0.933	0.628	0.0
356535073		941	PREDICTED: uncharacterized protein LOC10	0.944	0.917	0.637	0.0
449523029		936	PREDICTED: uncharacterized protein LOC10	0.964	0.942	0.607	0.0
449454087		931	PREDICTED: uncharacterized protein LOC10	0.959	0.941	0.600	0.0
79317429		944	WRC, zf-4CXXC-R1 transcription factor an	0.928	0.899	0.564	0.0

>gi\|359487562\|ref\|XP_002279731.2\| PREDICTED: uncharacterized protein LOC100249389 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1318 bits (3411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/905 (70%), Positives = 734/905 (81%), Gaps = 15/905 (1%)

Query: 1   MDHQRSSLGNGEDNGGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKRRAANSAL 60
           MDH RS+ GNGEDN GIP+DLRCKRSDGKQWRC+AMSMPDKTVCEKHYIQAK+RAANSAL
Sbjct: 1   MDHPRSTSGNGEDNVGIPEDLRCKRSDGKQWRCSAMSMPDKTVCEKHYIQAKKRAANSAL 60

Query: 61  RASLKKAKRKSLGESDIYLESKSDDYDMPLVNMKNNDYP-SVSGKKTLEKVSKSHFRYSP 119
           RASLKKAKRKSLGE+D+YLESKSDD+DMPLVN K  DYP SVSG K  EKV+K   RYSP
Sbjct: 61  RASLKKAKRKSLGETDVYLESKSDDFDMPLVNTKAADYPVSVSGNKYKEKVTKKQVRYSP 120

Query: 120 ETPPTRGMSARNPLKANDDSQRDVAEYEENLRSYKTPPHSGMDSSRNRSQRSFDPSP-TM 178
           ETPP R +S R+ LK NDDSQR+  ++EEN RSY+T P S MDSSR +SQRS D S    
Sbjct: 121 ETPPVRSVSIRSSLKPNDDSQRET-QFEENRRSYRTTPLSVMDSSRTKSQRSLDVSAMAD 179

Query: 179 EYSEGSMNSSEDTGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKV 238
                + +S ++ GGQ CHQCRRNDR+RV+WC++CDKRGYCDSCISTWYSDIPLEE++K+
Sbjct: 180 YSDGSTDSSDDENGGQTCHQCRRNDRDRVIWCLRCDKRGYCDSCISTWYSDIPLEEIQKI 239

Query: 239 CPACRGSCNCKACLRADNMIKVRIREIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVEL 298
           CPACRG+CNCK CLR DN+IKVRIREIPV DKLQ+L+ LLS+VLP VKQIH  QC+E+EL
Sbjct: 240 CPACRGTCNCKVCLRGDNLIKVRIREIPVQDKLQYLHSLLSSVLPEVKQIHHEQCAELEL 299

Query: 299 EKKLRGNEIDLARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDLREASTSV 358
           +K+L G  I L R +L+ DEQMCCN CR+PIIDYHRHC NC YDLCL+CCQDLREAS   
Sbjct: 300 DKRLHGASIKLERQRLNNDEQMCCNFCRVPIIDYHRHCMNCSYDLCLNCCQDLREASMLG 359

Query: 359 GKEEFSENDRIQDTENASEQVKTSKLRLNLLEKFPGWKANNDGSIPCPPNEYGGCGYRSL 418
            K E +E       E  SEQVK +KL+LNL +KFP WK N+DGSIPCPP +YGGCG+ SL
Sbjct: 360 TKGEAAEK------ETLSEQVKPTKLKLNLADKFPAWKGNDDGSIPCPPKDYGGCGFSSL 413

Query: 419 NLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETLLNTGSYDHSLCQYAHREDRDGNFLYCP 478
            L+RIFKMNWVAKLVKNVEEMV+GCKV D  +   T S +   CQ AHRED D NFLYCP
Sbjct: 414 TLTRIFKMNWVAKLVKNVEEMVTGCKVYDINSPQKTRSSNR-FCQSAHREDSDDNFLYCP 472

Query: 479 SSHDIRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRI 538
           SS DI++EGIGNFRKHW++GEPVIVKQVCD SS+S WDP  IWRGIRET+DEKTKD+NR 
Sbjct: 473 SSQDIKTEGIGNFRKHWIRGEPVIVKQVCDDSSISNWDPSVIWRGIRETSDEKTKDDNRT 532

Query: 539 VKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFI 598
           VKAIDCLDWSEVDIELG+FIKGYSEGR+R+DGWPEMLKLKDWPSPSASEE LLY +PEFI
Sbjct: 533 VKAIDCLDWSEVDIELGQFIKGYSEGRLRDDGWPEMLKLKDWPSPSASEELLLYQRPEFI 592

Query: 599 SKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPD 658
           SK+PLLEYIHS+ G LNVAAKLPHYSLQNDVGP I++SYGTYEEL  G+SV NLH  M D
Sbjct: 593 SKMPLLEYIHSKWGLLNVAAKLPHYSLQNDVGPNIFISYGTYEELGSGDSVTNLHLEMRD 652

Query: 659 MVYLLVHMGEVKLPTTEDEKIQS---SSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVN 715
           MVYLLVH  EVKL   ++EKI+    +S ESE  ES GD +    EG  PDLSLGGHD  
Sbjct: 653 MVYLLVHTSEVKLKGRQEEKIEKGKEASMESEAKESPGDVQTSLDEGRTPDLSLGGHDQQ 712

Query: 716 NEHVEKSATDEDEIMEDQGVE-TGTAEEKTVKSERLNG-YSDVSEKTHPGAHWDVFRRQD 773
            +H EK   D+DE MEDQG++ T + E KTV  E L+    D+S+ THPGA WDVFRRQD
Sbjct: 713 GDHGEKLNNDKDEEMEDQGIDTTSSVEAKTVNCENLHSDNGDISQITHPGALWDVFRRQD 772

Query: 774 VPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHL 833
           VPKLIEYL+ HW +FG+P   T D V HPLY E ++LN  HK +LKEEFGVEPWSFEQHL
Sbjct: 773 VPKLIEYLQIHWEEFGKPTSATTDSVQHPLYDEAIFLNRHHKTQLKEEFGVEPWSFEQHL 832

Query: 834 GEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVR 893
           G+A+FIPAGCPFQ RNLQSTVQLGLDFL PES+GEAVRLA+EIRCLP +HEAK QVLEV 
Sbjct: 833 GQAIFIPAGCPFQSRNLQSTVQLGLDFLSPESLGEAVRLADEIRCLPTEHEAKRQVLEVG 892

Query: 894 QRKLF 898
           +  L+
Sbjct: 893 KISLY 897

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255542696\|ref\|XP_002512411.1\| transcription factor, putative [Ricinus communis] gi\|223548372\|gb\|EEF49863.1\| transcription factor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224123112\|ref\|XP_002318998.1\| predicted protein [Populus trichocarpa] gi\|222857374\|gb\|EEE94921.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224123790\|ref\|XP_002330209.1\| predicted protein [Populus trichocarpa] gi\|222871665\|gb\|EEF08796.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356574955\|ref\|XP_003555608.1\| PREDICTED: uncharacterized protein LOC100792166 [Glycine max]	Back alignment and taxonomy information

>gi\|357441701\|ref\|XP_003591128.1\| PsbP-like protein [Medicago truncatula] gi\|355480176\|gb\|AES61379.1\| PsbP-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356535073\|ref\|XP_003536073.1\| PREDICTED: uncharacterized protein LOC100801287 [Glycine max]	Back alignment and taxonomy information

>gi\|449523029\|ref\|XP_004168527.1\| PREDICTED: uncharacterized protein LOC101227379 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449454087\|ref\|XP_004144787.1\| PREDICTED: uncharacterized protein LOC101213201 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|79317429\|ref\|NP_001031007.1\| WRC, zf-4CXXC-R1 transcription factor and jumonji domain-containing protein [Arabidopsis thaliana] gi\|332190269\|gb\|AEE28390.1\| WRC, zf-4CXXC-R1 transcription factor and jumonji domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		914
TAIR\|locus:2036014		944	AT1G09060 "AT1G09060" [Arabido	0.770	0.745	0.547	1.7e-210
TAIR\|locus:2125221		840	AT4G00990 "AT4G00990" [Arabido	0.669	0.728	0.354	4e-138
TAIR\|locus:2008875		875	AT1G11950 "AT1G11950" [Arabido	0.561	0.586	0.370	3.3e-130
TAIR\|locus:2027109		883	AT1G62310 "AT1G62310" [Arabido	0.607	0.628	0.353	4.2e-130
TAIR\|locus:2141221		927	B160 "AT4G21430" [Arabidopsis	0.537	0.529	0.335	1.4e-73
UNIPROTKB\|F1RH75		1766	KDM3B "Uncharacterized protein	0.172	0.089	0.371	3.2e-40
UNIPROTKB\|Q7LBC6		1761	KDM3B "Lysine-specific demethy	0.175	0.090	0.367	6.4e-40
UNIPROTKB\|E1BE97		1759	LOC100848816 "Uncharacterized	0.175	0.090	0.367	1.3e-39
MGI\|MGI:1923356		1562	Kdm3b "KDM3B lysine (K)-specif	0.175	0.102	0.372	1.5e-38
UNIPROTKB\|F1NJZ2		1755	KDM3B "Uncharacterized protein	0.170	0.088	0.354	3.9e-38

TAIR\|locus:2036014 AT1G09060 "AT1G09060" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2035 (721.4 bits), Expect = 1.7e-210, P = 1.7e-210
 Identities = 406/742 (54%), Positives = 497/742 (66%)

Query:     9 GNGEDNGGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQXXXXXXXXXXXXXXXXXX 68
             GNGE   GIPDDLRCKRSDGKQWRCTAMSM DKTVCEKHYIQ                  
Sbjct:    30 GNGESIPGIPDDLRCKRSDGKQWRCTAMSMADKTVCEKHYIQAKKRAANSAFRANQKKAK 89

Query:    69 XXXX-GESDIYLESKSDDYDMPLVNMK--NNDYPSVSGKK-TLEKV-SKSHFRYSPETPP 123
                  GE+D Y E K DD+++P+ ++   NN   S S     LEK  +KS  RYSPETP 
Sbjct:    90 RRSSLGETDTYSEGKMDDFELPVTSIDHYNNGLASASKSNGRLEKRHNKSLMRYSPETPM 149

Query:   124 TRGMSARNPLKANDDSQRDVAEYEENLRSYKTPPHSG-MDSSRNRSQRSFDPSPTMEYSE 182
              R  S R  +  NDD  RDV  +EE  RSY+TPP    MD +RNRS +S  P   MEYS 
Sbjct:   150 MRSFSPRVAVDLNDDLGRDVVMFEEGYRSYRTPPSVAVMDPTRNRSHQSTSP---MEYSA 206

Query:   183 GSMNSSEDTGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242
              S + S ++ G+ICHQC+R DRER++ C+KC++R +C +C+S  YS+I LEE+EKVCPAC
Sbjct:   207 ASTDVSAESLGEICHQCQRKDRERIISCLKCNQRAFCHNCLSARYSEISLEEVEKVCPAC 266

Query:   243 RGSCNCKACLRADNMIKVRIREIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVELEKKL 302
             RG C+CK+CLR+DN IKVRIREIPVLDKLQ+LY LLSAVLPV+KQIH  QC EVELEK+L
Sbjct:   267 RGLCDCKSCLRSDNTIKVRIREIPVLDKLQYLYRLLSAVLPVIKQIHLEQCMEVELEKRL 326

Query:   303 RGNEIDLARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDLREASTSVGKEE 362
             R  EIDL RA+L ADEQMCCN+CRIP++DY+RHC NC YDLCL CCQDLRE S SV    
Sbjct:   327 REVEIDLVRARLKADEQMCCNVCRIPVVDYYRHCPNCSYDLCLRCCQDLREES-SVTISG 385

Query:   363 FSENDRIQDTENASEQVKTSKLRLNLLEKFPGWKANNDGSIPCPPNEYGGCGYRSLNLSR 422
              ++N  +QD + A       KL+LN   KFP W+AN DGSIPCPP EYGGCG  SLNL+R
Sbjct:   386 TNQN--VQDRKGAP------KLKLNFSYKFPEWEANGDGSIPCPPKEYGGCGSHSLNLAR 437

Query:   423 IFKMNWVAKLVKNVEEMVSGCKVCDSETLLNTGSYDHSLCQYAHREDRDGNFLYCPSSHD 482
             IFKMNWVAKLVKN EE+VSGCK+ D   LLN    D   C++A RE+   N++Y PS   
Sbjct:   438 IFKMNWVAKLVKNAEEIVSGCKLSD---LLNPDMCDSRFCKFAEREESGDNYVYSPSLET 494

Query:   483 IRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAI 542
             I+++G+  F + W +G  V VK V D SS S WDP+ IWR I E +DEK ++ +  +KAI
Sbjct:   495 IKTDGVAKFEQQWAEGRLVTVKMVLDDSSCSRWDPETIWRDIDELSDEKLREHDPFLKAI 554

Query:   543 DCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLP 602
             +CLD  EVD+ LGEF + Y +G+ +E G P + KLKDWPSPSASEEF+ Y +PEFI   P
Sbjct:   555 NCLDGLEVDVRLGEFTRAYKDGKNQETGLPLLWKLKDWPSPSASEEFIFYQRPEFIRSFP 614

Query:   603 LLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYL 662
              LEYIH RLG LNVAAKLPHYSLQND GPKIY+S GTY+E+  G+S+  +H+NM DMVYL
Sbjct:   615 FLEYIHPRLGLLNVAAKLPHYSLQNDSGPKIYVSCGTYQEISAGDSLTGIHYNMRDMVYL 674

Query:   663 LVHMGE------VK----LPTTEDEKIQXXXXXXXXXXXXGDPEKVSGEGSFPDLSLGGH 712
             LVH  E      V+    +P   D+K+               PE+   +G   DLSLG  
Sbjct:   675 LVHTSEETTFERVRKTKPVPEEPDQKMSENESLLS-------PEQKLRDGELHDLSLGEA 727

Query:   713 DVNNEHVEKSATDEDEIMEDQG 734
              +     E + T   E + + G
Sbjct:   728 SMEKNEPELALTVNPENLTENG 749

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR\|locus:2125221 AT4G00990 "AT4G00990" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2008875 AT1G11950 "AT1G11950" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2027109 AT1G62310 "AT1G62310" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2141221 B160 "AT4G21430" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RH75 KDM3B "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7LBC6 KDM3B "Lysine-specific demethylase 3B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BE97 LOC100848816 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1923356 Kdm3b "KDM3B lysine (K)-specific demethylase 3B" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NJZ2 KDM3B "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		914
pfam08879		46	pfam08879, WRC, WRC	4e-09
pfam02373		114	pfam02373, JmjC, JmjC domain, hydroxylase	6e-09
pfam10497		105	pfam10497, zf-4CXXC_R1, Zinc-finger domain of mono	1e-07

>gnl\|CDD\|192171 pfam08879, WRC, WRC	Back alignment and domain information

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 18 PDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKRRAANS 58
          P+  RC+R+DGK+WRC+   +P K +CE+H  + + R+  S
Sbjct: 2  PEPGRCRRTDGKKWRCSRRVLPGKKLCERHLHRGRSRSRKS 42

The WRC domain, named after the conserved Trp-Arg-Cys motif, contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H). It is suggested that the WRC domain functions in DNA binding. Length = 46

>gnl\|CDD\|202224 pfam02373, JmjC, JmjC domain, hydroxylase	Back alignment and domain information

>gnl\|CDD\|220784 pfam10497, zf-4CXXC_R1, Zinc-finger domain of monoamine-oxidase A repressor R1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		914
KOG1356		889	consensus Putative transcription factor 5qNCA, con	100.0
PF10497		105	zf-4CXXC_R1: Zinc-finger domain of monoamine-oxida	99.84
PF08879		46	WRC: WRC; InterPro: IPR014977 WRC is named after t	99.55
PF02373		114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	99.47
PF13621		251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	98.94
smart00558		57	JmjC A domain family that is part of the cupin met	96.77
KOG2131		427	consensus Uncharacterized conserved protein, conta	95.85
cd02340		43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	94.94
cd02335		49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	93.45
cd02249		46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	93.37
cd02339		45	ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre	93.3
PF07883		71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	92.15
COG1917		131	Uncharacterized conserved protein, contains double	91.83
KOG2130		407	consensus Phosphatidylserine-specific receptor Ptd	90.52
cd02344		45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	89.7
PF00569		46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	89.48
COG0662		127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	89.21
cd02341		48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	89.05
smart00291		44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	88.94
cd02345		49	ZZ_dah Zinc finger, ZZ type. Zinc finger present i	87.11
cd02338		49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	86.19
cd02337		41	ZZ_CBP Zinc finger, ZZ type. Zinc finger present i	85.72
TIGR03214		260	ura-cupin putative allantoin catabolism protein. T	85.28
KOG1356		889	consensus Putative transcription factor 5qNCA, con	81.63
PRK09943		185	DNA-binding transcriptional repressor PuuR; Provis	81.11

>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]	Back alignment and domain information

Probab=100.00  E-value=3.5e-179  Score=1529.98  Aligned_cols=644  Identities=31%  Similarity=0.512  Sum_probs=570.3

Q ss_pred             CCCCccccccCCCCCeEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCCCccccccccccCCcccccccc----ccc
Q 002513          192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIKVRIRE----IPV  267 (914)
Q Consensus       192 ~g~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRgiCNCs~Clr~~g~~~t~~~e----is~  267 (914)
                      ...+||||.+..+..+-+|++|+-+ ||.+|++.||+....++++.+|++|+..|||..|....++++|.+..    ++.
T Consensus       228 ~~~mC~~C~~tlfn~hw~C~~C~~~-~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~~q~h~~~~Lm~Tq~i~~~al~~~  306 (889)
T KOG1356|consen  228 IREMCDRCETTLFNIHWRCPRCGFG-VCLDCYRKWYPRLSKEEVAEKCEFSWLKCNKGQCHALSELMPTQIIPGSALLDL  306 (889)
T ss_pred             cchhhhhhcccccceeEEccccCCe-eeecchhhccccchHhHhhhhhhHHHHhcCCccccchhhcccccccchhhhhhH
Confidence            4569999998888889999999944 99999999999998899999999999999999999999999998766    788


Q ss_pred             ccchHHHH--HHHHhhhhhhhhhhhhhhhhhheehhhcccccc--ccccccCcccccccCCCccccccccccCCCCCcch
Q 002513          268 LDKLQHLY--CLLSAVLPVVKQIHQIQCSEVELEKKLRGNEID--LARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDL  343 (914)
Q Consensus       268 ~~Kv~~l~--yll~~LLP~Lkqi~~EQ~~E~EiEAkIqG~~i~--i~~a~~~~DERvyCDnCkTSIvD~HRSC~~CsYDL  343 (914)
                      .+++.++.  |+|..++|+|+.++..|..+.|.||+|||....  ...+...++|++|||+|+|||.|+||+||+|+|.+
T Consensus       307 ~~~~h~~r~k~~I~~~cpcl~~~~~~~~~~~~~e~~vq~~~~~~~~~~~~~~~~e~~~~~~~~~si~~l~r~cP~~s~~~  386 (889)
T KOG1356|consen  307 SDRVHAVREKFGIKAHCPCLKKQNKQQPLDAETEASVQGTEPTSKPPVTQANPEEPLYCDHCATSIGDLKRSCPDSSYAI  386 (889)
T ss_pred             HHHHHHHHHHhhHHhhChhHHhhhhhccccHHHHHHHhcCCCCCCccccccCcCCCccccccccchhhccccCCCccccc
Confidence            88888887  999999999999999999999999999999822  45677777999999999999999999999999999


Q ss_pred             hHhhhHHHhhcccCCCcc-ccccccccc---cccchhhhhhhhhhhhccccCCCCcccCCCCCccCCCCCCCCCCCcccc
Q 002513          344 CLSCCQDLREASTSVGKE-EFSENDRIQ---DTENASEQVKTSKLRLNLLEKFPGWKANNDGSIPCPPNEYGGCGYRSLN  419 (914)
Q Consensus       344 CL~CC~ELR~g~~~~~~~-~~~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~W~a~~dGsIpCpPke~ggCg~~~L~  419 (914)
                      ||.||++||+|.+....+ .+.+..||.   ||-...+....+..   ...+ +.  +|++|+|.|-|..++||+...|.
T Consensus       387 ~l~~~~~i~~g~l~~~~e~~~~~~~r~~~~~~g~~~~~~~~~s~~---~~~~-~~--~~~ng~~r~l~~~~~g~~~~~l~  460 (889)
T KOG1356|consen  387 CLPWLADLRRGDLKEKEECELMLRSRGVKYEHGPDPIEPSLSSVS---VDEP-SS--ANENGSLRDLLLSLAGCLDRGLK  460 (889)
T ss_pred             cchHHHHhhcCCcccchhHHHHHHHHHHHhhcCccccccccCCCC---CCCC-cc--cccccchhhcccccCccchhhhh
Confidence            999999999998877766 566888877   66555443322221   0011 11  89999999999999999999999


Q ss_pred             cccccccchHHHHHHHHHHHHhcCCcCCCCCc-cccCCCCcccccccccCCCCCCeeecCCCcccccccHHHHHHHhhcC
Q 002513          420 LSRIFKMNWVAKLVKNVEEMVSGCKVCDSETL-LNTGSYDHSLCQYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHWVKG  498 (914)
Q Consensus       420 L~~if~~~wi~~L~~~aee~~~~~~~~d~~~~-~c~~~~~~~~r~aA~re~s~dn~ly~P~~~d~~~~~l~hFQ~hW~kG  498 (914)
                      |+|+||..|.+.|+.+||.-+..+-..-.... .|+....+.++++|.|+.+.|||||||.+.+++.+|+.|||+||++|
T Consensus       461 lkr~lpn~~~s~i~~~vE~k~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~cdn~Ll~l~~d~~~~~n~~~FQEhWkqG  540 (889)
T KOG1356|consen  461 LKRILPNILDSIIASVVENKLTSKLSKPPLRLCRSSQDGSGLLLSAASHSWLCDNRLLSLKVDPLNQNNLKHFQEHWKQG  540 (889)
T ss_pred             hhhcCchHHHHHHHHHHHhhcccccCCchhhcCccccccccCccccCCCCcCCCCceecCccCccchhHHHHHHHHHhcC
Confidence            99999999999999999999987444433322 23455677889999999999999999999889999999999999999


Q ss_pred             CCEEEecccccCCCCCCchhhhhhHHhhhhccccccccCceEEEecCCCceEecchhhhhcccCCCcccCCCCcceeeec
Q 002513          499 EPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKLK  578 (914)
Q Consensus       499 ePVIV~~Vl~~~s~lsW~P~~mwr~~~e~~~~~~~~~~~~vkaiDCld~~ev~i~i~~Ff~Gf~~gr~~~~g~p~mLKLK  578 (914)
                      ||||||||++++++++|+||+|||+|++..+.-+.-.+.++.++||++      +..+||.||++|+++++|||+|||||
T Consensus       541 qPViVs~V~~~l~g~lW~P~a~~~~~g~q~~~l~n~~~~~i~s~d~~~------~fwegFe~~~kr~~~~~g~p~vLKLK  614 (889)
T KOG1356|consen  541 QPVIVSGVHKKLNGLLWKPEALSRAFGDQVVDLSNCNNSQIISNDCVD------NFWEGFEGYSKRLKSENGWPEVLKLK  614 (889)
T ss_pred             CcEEehHhhhhccccccchHHHHHHhccchhhhhcCCCCCccccchhh------hHHHhhcccccCcccccCCeeEEeec
Confidence            999999999999999999999999999876654445566677778877      78999999999999999999999999


Q ss_pred             CCCCcchhHHHhhhchhHHHhCCCcccccCCCCccchhcccCCCCCCCCCCCcchhhcccccccccCCCCcceeeeeccc
Q 002513          579 DWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPD  658 (914)
Q Consensus       579 DWPps~~F~e~lP~h~~eFi~aLP~~EYt~pr~G~LNLAs~LP~~~lkPDLGPK~YIAYG~~eelG~GdSvTkLH~DmSD  658 (914)
                      ||||+++|+++||+||+|||++|||||||| ++|.||||++||.+|++||||||||||||+++++|||||||||||||||
T Consensus       615 DWpp~~~Fkd~lP~r~eell~sLPlpEYt~-r~G~LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr~~gtTnLH~dvSD  693 (889)
T KOG1356|consen  615 DWPPGEDFKDMLPRRFEELLASLPLPEYTD-RDGKLNLASKLPEGFVRPDLGPKLYNAYGVSTELGRGDGTTNLHLDVSD  693 (889)
T ss_pred             CCCchHhHhhhhhHHHHHHHHcCCchhhhc-CCCccchHhhCcccccCCCCCchhhhhccccccccCCCCceeeceehhh
Confidence            999999999999999999999999999999 8999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcccccCCCchhhHhhcccchhcccccCCCCCccCCCCCCCCCcCCCCCCCccccccccccchhhhhccCCccc
Q 002513          659 MVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDEDEIMEDQGVETG  738 (914)
Q Consensus       659 AVNIL~h~aev~~~~~~~~~i~~l~~k~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  738 (914)
                      ||||||||++++.   +...|++++++..+++..+                                    ++.+..   
T Consensus       694 aVNILvyv~e~~~---~~~~~~~~~k~~~~~~~de------------------------------------~~~~~~---  731 (889)
T KOG1356|consen  694 AVNILVYVGEPPG---QIEQIAKVLKKIQEGDLDE------------------------------------ITRSRI---  731 (889)
T ss_pred             hhhheeeeccCCc---hHHhHHHHHHhhhhcchhh------------------------------------hhhhhc---
Confidence            9999999999887   4444555555444332111                                    111000   


Q ss_pred             cccccccccccccCCCCCCCCCCCceeeeeccCCChHHHHHHHHHHHhhcCCCCCCCCCccCCCCcCCceeeCHHHHHHH
Q 002513          739 TAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKL  818 (914)
Q Consensus       739 ~~~~~~~~~~~~~~~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~p~~~v~dPIHDQ~fYLt~~hk~rL  818 (914)
                                       .+..+.+||||||||+|||+||||||+||++||+|    +|.+|+||||||+||||.+||+||
T Consensus       732 -----------------~~~~e~~GALWhIF~~~Dv~KireyL~k~~~E~~~----~~~~v~hPIhDQS~YLd~~lr~RL  790 (889)
T KOG1356|consen  732 -----------------SSVSETPGALWHIFRAQDVPKIREYLRKVCKEQGH----EVPKVHHPIHDQSWYLDRYLRRRL  790 (889)
T ss_pred             -----------------cccccCCcchhhhhhhcchHHHHHHHHHhhHHhcC----CCCcccCCCcccceeccHHHHHHH
Confidence                             02447899999999999999999999999999999    568899999999999999999999


Q ss_pred             HHHhCccceeEeeecCCeEEecCCCccccccccccceecccccCccCHHHHHHHHHHHhcCCccccccccccchhchhhh
Q 002513          819 KEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQRKLF  898 (914)
Q Consensus       819 keEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~akeDkLeVkkm~ly  898 (914)
                      |||||||||||+|+||||||||||||||||||+||||||+||||||||.||||||+|||+||++|.|||||||||||+ |
T Consensus       791 keEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp~~h~~~eDKLqvK~mi-~  869 (889)
T KOG1356|consen  791 KEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLPQNHKNHEDKLQVKNMI-Y  869 (889)
T ss_pred             HHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCCCcccchHHHHHHHHHH-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999986 6


Q ss_pred             hhhhhhhhhhhhhcc
Q 002513          899 QEVFSPLLSLKLLCS  913 (914)
Q Consensus       899 a~~~~~~~~lk~~~~  913 (914)
                      ++||+||..||.+.|
T Consensus       870 hAVk~Av~~L~~~~s  884 (889)
T KOG1356|consen  870 HAVKDAVGTLKEAES  884 (889)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            667889999999876

>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression	Back alignment and domain information

>PF08879 WRC: WRC; InterPro: IPR014977 WRC is named after the conserved Trp-Arg-Cys motif, it contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H)	Back alignment and domain information

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []	Back alignment and domain information

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A	Back alignment and domain information

>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily	Back alignment and domain information

>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]	Back alignment and domain information

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type	Back alignment and domain information

>cd02335 ZZ_ADA2 Zinc finger, ZZ type	Back alignment and domain information

>cd02249 ZZ Zinc finger, ZZ type	Back alignment and domain information

>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type	Back alignment and domain information

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)	Back alignment and domain information

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	Back alignment and domain information

>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]	Back alignment and domain information

>cd02344 ZZ_HERC2 Zinc finger, ZZ type	Back alignment and domain information

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type	Back alignment and domain information

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein	Back alignment and domain information

>cd02345 ZZ_dah Zinc finger, ZZ type	Back alignment and domain information

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type	Back alignment and domain information

>cd02337 ZZ_CBP Zinc finger, ZZ type	Back alignment and domain information

>TIGR03214 ura-cupin putative allantoin catabolism protein	Back alignment and domain information

>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]	Back alignment and domain information

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		914
2ypd_A		392	Crystal Structure Of The Jumonji Domain Of Human Ju		2e-26

>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji Domain Containing 1c Protein Length = 392

Back alignment and structure

Iteration: 1

Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 106/404 (26%), Positives = 182/404 (45%), Gaps = 78/404 (19%) Query: 491 FRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEV 550 F++ W +G+P +V V ++S+W + I + D + ++C D Sbjct: 27 FKECWKQGQPAVVSGVHKKMNISLWKAESI---SLDFGDHQAD-------LLNCKDSIIS 76 Query: 551 DIELGEFIKGYSEGRVRE---DGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYI 607 + + EF G+ E R+ G +LKLKDWPS + + + + LPL EY Sbjct: 77 NANVKEFWDGFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYC 136 Query: 608 HSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMG 667 + G N+A+ LP + ++ D+GP++ +YG D NLH + D+V +LV++G Sbjct: 137 NPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVVAAKDHDIGTTNLHIEVSDVVNILVYVG 195 Query: 668 EVKLPTTEDEKIQXXXXXXXXXXXXGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDED 727 K G G LS G + K +ED Sbjct: 196 IAK-----------------------------GNGI---LSKAG-------ILKKFEEED 216 Query: 728 EIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTD 787 ++D + +RL S++ PGA W ++ +DV K+ E+L++ Sbjct: 217 --LDD------------ILRKRLKDSSEI-----PGALWHIYAGKDVDKIREFLQK---- 253 Query: 788 FGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQV 847 + G+ P+ + Y+N +++L EE+GV + Q LG+A+ +PAG QV Sbjct: 254 ISKEQGLEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQV 313 Query: 848 RNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPN--DHEAKLQV 889 +N S +Q+ DF+ PE + E+ L +E+R L +++ KLQV Sbjct: 314 QNFHSCIQVTEDFVSPEHLVESFHLTQELRLLKEEINYDDKLQV 357

PyMOL of 2ypd

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		914
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 50.2 bits (119), Expect = 3e-06
 Identities = 82/579 (14%), Positives = 160/579 (27%), Gaps = 173/579 (29%)

Query: 158 HSGMDSSRNRSQ---------------RSFDPSPTMEYSEGSMNSSE-DTGGQICHQCRR 201
           H  MD      Q                +FD     +  +  ++  E D    I      
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID---HIIMSKDA 60

Query: 202 NDR-ERVVWCVKCDKRG-----YCDSCISTWYSDIPLEELEKVC--PACRGSCNCKACLR 253
                R+ W +   K+      + +  +   Y  + +  ++     P+          + 
Sbjct: 61  VSGTLRLFWTL-LSKQEEMVQKFVEEVLRINYKFL-MSPIKTEQRQPS----------MM 108

Query: 254 ADNMIKVRIR---EIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVELEKKLRGNE---I 307
               I+ R R   +  V  K           +  ++   +++    +   +LR  +   I
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYN---------VSRLQPYLKLR----QALLELRPAKNVLI 155

Query: 308 D---------LARAKLSADEQMCCNICRIPIIDYHRHCGNCM-YDLCLSCCQDLREASTS 357
           D         +A     + +  C    +I    +  +  NC   +  L   Q L      
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKI----FWLNLKNCNSPETVLEMLQKL---LYQ 208

Query: 358 VGKEEFSENDRIQDTENASEQVKTSKLRLNLLEKFPG-------------WKANNDGSIP 404
           +     S +D   + +     ++    RL   + +               W A N     
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN----- 263

Query: 405 CPPNEYGGCGYRSLNLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETLLNTGSYDHSLCQY 464
                   C  + L  +R           K V + +S              S DH     
Sbjct: 264 ------LSC--KILLTTR----------FKQVTDFLSAATTTHI-------SLDHHSMTL 298

Query: 465 AHREDRD--GNFLYCPSSHDIRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWR 522
              E +     +L C    D+  E         +   P  +  +    + SI D    W 
Sbjct: 299 TPDEVKSLLLKYLDCRPQ-DLPREV--------LTTNPRRLSII----AESIRDGLATWD 345

Query: 523 GIRETADEKTKDENRIVKA-IDCLDWSEVD---IELGEFIKGYSEGRVREDGW-PEMLKL 577
             +    +K      I+++ ++ L+ +E       L  F               P +L  
Sbjct: 346 NWKHVNCDKL---TTIIESSLNVLEPAEYRKMFDRLSVF---------PPSAHIPTILLS 393

Query: 578 KDWPSPSASEEFLLYHKPEFISKLPLLE--------YIHSRLGFLNVAAKLPH-YSLQND 628
             W     S+  ++ +  +      L+E         I S   +L +  KL + Y+L   
Sbjct: 394 LIWFDVIKSDVMVVVN--KLHKYS-LVEKQPKESTISIPSI--YLELKVKLENEYALHR- 447

Query: 629 VGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMG 667
               I   Y   +  D  + +           Y   H+G
Sbjct: 448 ---SIVDHYNIPKTFDSDDLIPPYLDQ-----YFYSHIG 478

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		914
d1v5na_		89	g.49.1.3 (A:) Pdi-like hypothetical protein At1g60	0.002

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89	Back information, alignment and structure


class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 313 KLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSC 347
           +L+  +   C+ C      +  HC  C +DL   C
Sbjct: 41  ELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKC 75

PyMOL of d1v5na_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		914
d1h2ka_		335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	99.01
d1vrba1		319	Putative asparaginyl hydroxylase YxbC {Bacillus su	98.71
d1v70a_		105	Hypothetical protein TTHA0104 {Thermus thermophilu	92.6
d1vj2a_		114	Hypothetical protein TM1459 {Thermotoga maritima [	92.22
d1rc6a_		253	Hypothetical protein YlbA {Escherichia coli [TaxId	91.22
d1sefa_		250	Hypothetical protein EF2996 {Enterococcus faecalis	91.03
d1yhfa1		112	Hypothetical protein SPy1581 {Streptococcus pyogen	90.92
d2b8ma1		108	Hypothetical protein MJ0764 {Archaeon Methanococcu	90.8
d1lr5a_		160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	90.4
d1juha_		348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	88.05
d1sfna_		245	Hypothetical protein DR1152 {Deinococcus radiodura	87.98
d1sq4a_		273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	87.61
d2bnma2		122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	86.22
d1y3ta1		330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	85.53
d1j58a_		372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	84.73
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	84.35
d1o4ta_		115	Hypothetical protein TM1287 {Thermotoga maritima [	84.2
d1iyma_		55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	83.89
d2dipa1		85	Zinc finger ZZ-type-containing protein 2 {Human (H	83.7
d1mm2a_		61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	83.68
d1jm7b_		97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	83.66
d1x82a_		190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	83.37
d1zx5a1		299	Putative mannosephosphate isomerase AF0035 {Archae	82.77
d1qwra_		315	Mannose-6-phosphate isomerase ManA {Bacillus subti	82.59
d1pmia_		440	Phosphomannose isomerase {Yeast (Candida albicans)	81.17
d2fc7a1		69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	80.37

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.8e-11  Score=91.23  Aligned_cols=39  Identities=15%  Similarity=0.287  Sum_probs=34.7

Q ss_pred             HCCCCEEEEEECCCEEEECCCCCCCCCCCCC-CCEECCCC
Q ss_conf             4962116864058768856899411146533-21000133
Q 002513          822 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS-TVQLGLDF  860 (914)
Q Consensus       822 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS-CIKVAlDF  860 (914)
                      .++.+|.+++.+||++|||+|..|||+||.+ +|.|++-|
T Consensus       242 ~~~~~~~~~l~pGd~L~iP~~w~H~V~~~~~~~~sisvn~  281 (335)
T d1h2ka_         242 QNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF  281 (335)
T ss_dssp             GGCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEE
T ss_pred             HCCCCEEEEECCCCEEEECCCCEEEEEECCCCCEEEEEEE
T ss_conf             0597149998899878627997089997589976999975

PyMOL of d1h2ka_

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}	Back information, alignment and structure

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}	Back information, alignment and structure

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}	Back information, alignment and structure

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure