Citrus Sinensis ID: 002519
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 913 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FUY2 | 931 | Transcriptional corepress | yes | no | 0.801 | 0.786 | 0.744 | 0.0 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.299 | 0.178 | 0.341 | 5e-32 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.292 | 0.196 | 0.314 | 9e-29 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.316 | 0.229 | 0.298 | 1e-27 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.313 | 0.169 | 0.275 | 2e-24 | |
| O22212 | 554 | U4/U6 small nuclear ribon | no | no | 0.324 | 0.534 | 0.280 | 3e-24 | |
| O76734 | 579 | General transcriptional c | yes | no | 0.299 | 0.471 | 0.324 | 7e-24 | |
| D3TLL6 | 411 | Lissencephaly-1 homolog O | N/A | no | 0.303 | 0.673 | 0.255 | 2e-22 | |
| Q8BG40 | 658 | Katanin p80 WD40 repeat-c | yes | no | 0.270 | 0.375 | 0.296 | 3e-22 | |
| Q9BVA0 | 655 | Katanin p80 WD40 repeat-c | yes | no | 0.270 | 0.377 | 0.296 | 4e-22 |
| >sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2 | Back alignment and function desciption |
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Score = 1097 bits (2836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/758 (74%), Positives = 644/758 (84%), Gaps = 26/758 (3%)
Query: 171 RRDGAHLLNGNTNGLLGNDS--LMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQR 228
RRDG+HL NG+ NGL+GN+S +MRQNPG+ +++A++ YEE++K+P R+SLD+AAMK R
Sbjct: 185 RRDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVKMPTQRESLDEAAMK-R 243
Query: 229 FGENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEI 288
FG+N+GQLLDP+HAS +KSAAA+GQP+GQVLH T+GGMSPQVQ R+QQLPGS DIKSEI
Sbjct: 244 FGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMSPQVQTRNQQLPGSAVDIKSEI 303
Query: 289 NPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFH 348
NPVL PR A PEGSL+GIPGSNQG NNLTLKGWPLTG + LRSGLLQQQKPF+Q+ Q FH
Sbjct: 304 NPVLTPRTAVPEGSLIGIPGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQS-QSFH 362
Query: 349 QIQMLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVG 407
Q+ MLTPQHQQ L+LAQQNL S S S+E+RR +MLLNNRSM+LGKDGL +SVGDV+ NVG
Sbjct: 363 QLNMLTPQHQQQLMLAQQNLNSQSVSEENRRLKMLLNNRSMTLGKDGLGSSVGDVLPNVG 422
Query: 408 SPLPAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQH-------TLSNQQS 460
S L GG LLPRGDTDML+KLKMA + QQQQ QQQ PQ L+N Q
Sbjct: 423 SSLQPGGSLLPRGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNPQP 482
Query: 461 QSSNHNLHQQDKMGPAGSVTLDGSMSNSFRGNDQ-----TGRKRKQPVSSSGPANSSGTA 515
QSSNH++HQQ+K+G GS+T+DGS+SNSFRGN+Q +GRKRKQPVSSSGPANSSGTA
Sbjct: 483 QSSNHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSGTA 542
Query: 516 NTAGPSPSSAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDK 575
NTAGPSPSSAPSTPSTHTPGDVISMP LPHSG +SK +MMFGT+G GTLTSPSNQL
Sbjct: 543 NTAGPSPSSAPSTPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQL---- 598
Query: 576 DLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSK 635
ADMDR VEDGSLDDNVESFLS +D D RDA R MDVS+GF+F E NSVRAST+K
Sbjct: 599 -----ADMDRFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTK 653
Query: 636 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 695
V CCHFSSDGK+LA+ GHDKKAVLW+TDT+K KT LEEH+++ITD+RFSPS RLATSSF
Sbjct: 654 VTCCHFSSDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSF 713
Query: 696 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 755
DKTVRVWDADN GYSLRTFMGHS+ V SLDFHP KDDLICSCD D EIRYWSINNGSCTR
Sbjct: 714 DKTVRVWDADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTR 773
Query: 756 VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL 815
V+KGG+ Q+RFQP +G+YLAA++ N+V++LD ETQA R SLQGH PI+SVCWDPSG+ L
Sbjct: 774 VYKGGSTQIRFQPRVGKYLAASSANLVNVLDVETQAIRHSLQGHANPINSVCWDPSGDFL 833
Query: 816 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 875
ASVSED V+VWT+G+GSEGECVHELSCNGNKF SCVFHP YPSLLVIGCYQSLELWNMSE
Sbjct: 834 ASVSEDMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVIGCYQSLELWNMSE 893
Query: 876 NKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913
NKTMTL AHEGLI +LAVST TG VASASHDK VKLWK
Sbjct: 894 NKTMTLPAHEGLITSLAVSTATGLVASASHDKLVKLWK 931
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Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
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Score = 140 bits (353), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 154/287 (53%), Gaps = 14/287 (4%)
Query: 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 692
TS V F+ DG LA+G D+ LW ++ K + H+S + V F+P LA+
Sbjct: 1200 TSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLAS 1259
Query: 693 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 752
S DKTVR+WD + L TF GH+ V S+ F+P+ ++ S GD +R W I++
Sbjct: 1260 GSSDKTVRLWDISSSK-CLHTFQGHTNWVNSVAFNPDG-SMLASGSGDQTVRLWEISSSK 1317
Query: 753 CTRVFKGGT---AQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCW 808
C F+G T + + F P G LA+ +++ V + + C + GHT + SV +
Sbjct: 1318 CLHTFQGHTSWVSSVTFSPD-GTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIF 1376
Query: 809 DPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQ 866
P G +LAS S D +VR+W++ S G+C++ L + N S VF P +LL G Q
Sbjct: 1377 SPDGAILASGSGDQTVRLWSI---SSGKCLYTLQGHNNWVGSIVFSPD-GTLLASGSDDQ 1432
Query: 867 SLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912
++ LWN+S + + TL H + ++A S++ +AS S D+ +KLW
Sbjct: 1433 TVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKLW 1479
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
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Score = 129 bits (325), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 140/277 (50%), Gaps = 10/277 (3%)
Query: 641 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 700
FS DG+ +A+G D +W + LE H S + V FSP R+A+ S DKT++
Sbjct: 933 FSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIK 992
Query: 701 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG- 759
+WD + G +T GH SV S+ F P+ + D D I+ W +G+CT+ +G
Sbjct: 993 IWDTAS-GTCTQTLEGHGGSVWSVAFSPDGQRVASGSD-DKTIKIWDTASGTCTQTLEGH 1050
Query: 760 -GTAQ-MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS 817
G Q + F P R + + ++ + I DA + C +L+GH + SV + P G+ +AS
Sbjct: 1051 GGWVQSVVFSPDGQRVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVAS 1110
Query: 818 VSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 876
S D ++++W SG+ C L +G HS F P + ++++W+ +
Sbjct: 1111 GSIDGTIKIWDAASGT---CTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASG 1167
Query: 877 K-TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912
T TL H G + ++A S + VAS S DK +K+W
Sbjct: 1168 TCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIW 1204
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Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
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Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 150/302 (49%), Gaps = 13/302 (4%)
Query: 616 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 675
DVSQG K ++++ T V FS+DG+ LA+G D+ +W+ T + H+
Sbjct: 796 DVSQG---KCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHT 852
Query: 676 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 735
+ + + +SP L + S D+T+++WD ++T GH+ V S+ F P+ L C
Sbjct: 853 NSVYSIAYSPDSKILVSGSGDRTIKLWDCQTH-ICIKTLHGHTNEVCSVAFSPDGQTLAC 911
Query: 736 SCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAENVVSILDAETQAC 792
D +R W+ G C + + G T + F P + + + V + D +T
Sbjct: 912 V-SLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKY 970
Query: 793 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 851
SL+GHT I + + P + LAS S D SVR+W + S G+C L + + ++ V
Sbjct: 971 ISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNI---STGQCFQILLEHTDWVYAVV 1027
Query: 852 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVK 910
FHP + +++LWN+S + + TL+ H I +A S + +ASAS D+ V+
Sbjct: 1028 FHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVR 1087
Query: 911 LW 912
LW
Sbjct: 1088 LW 1089
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 140/298 (46%), Gaps = 12/298 (4%)
Query: 621 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 680
F +E N + VI S DG+ +A+G DK LW D +T L H +
Sbjct: 1060 FEMQERNRLEGHKDGVISISISRDGQTIASGSLDKTIKLWSRDGRLFRT-LNGHEDAVYS 1118
Query: 681 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 740
V FSP +A+ DKT+++W + G L+T GH +V ++ F P+ +L S D
Sbjct: 1119 VSFSPDGQTIASGGSDKTIKLWQTSD-GTLLKTITGHEQTVNNVYFSPDGKNL-ASASSD 1176
Query: 741 GEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSL 796
I+ W +G G G +RF P G+ +AA +E+ V + + +L
Sbjct: 1177 HSIKLWDTTSGQLLMTLTGHSAGVITVRFSPD-GQTIAAGSEDKTVKLWHRQDGKLLKTL 1235
Query: 797 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 855
GH ++S+ + P G+ LAS S D ++++W + ++G+ V L + + F
Sbjct: 1236 NGHQDWVNSLSFSPDGKTLASASADKTIKLWRI---ADGKLVKTLKGHNDSVWDVNFSSD 1292
Query: 856 YPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913
++ +++LWN + T T H G + A+ ++ +ASAS D ++LW+
Sbjct: 1293 GKAIASASRDNTIKLWNRHGIELETFTGHSGGVYAVNFLPDSNIIASASLDNTIRLWQ 1350
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|O22212|PRP4L_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 146/321 (45%), Gaps = 25/321 (7%)
Query: 608 RDAGGRGMDVSQGFSFKEANSVRASTSK------VICCHFSSDGKLLATGGHDKKAVLWH 661
RD MD ++ K A + S + C FS DGK+LAT LW
Sbjct: 224 RDDPDEDMDAETKWALKHAKHMALDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWE 283
Query: 662 ----TDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 717
T+T+ L++H TDV FSP LAT+S D+T ++W D G L+TF GH
Sbjct: 284 MPQVTNTIAV---LKDHKERATDVVFSPVDDCLATASADRTAKLWKTD--GTLLQTFEGH 338
Query: 718 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 774
+ + FHP+ + + D R W IN G+ + +G + FQ
Sbjct: 339 LDRLARVAFHPSG-KYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAA 397
Query: 775 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSE 833
+ +++ + D T L QGH KP+ SV + P+G LAS ED+ R+W +
Sbjct: 398 SCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDL---RM 454
Query: 834 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM-TLTAHEGLIAAL 891
+ ++ + + N + P L Y + +W+ + + +L HE +A+L
Sbjct: 455 RKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASL 514
Query: 892 AVSTETGYVASASHDKFVKLW 912
++ ++ +A+ SHD+ +KLW
Sbjct: 515 DITADSSCIATVSHDRTIKLW 535
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O76734|TUP1_DICDI General transcriptional corepressor tupA OS=Dictyostelium discoideum GN=tupA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (282), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 142/299 (47%), Gaps = 26/299 (8%)
Query: 636 VICC-HFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPR 689
V+CC +FS+DGK LATG ++ A ++ DT K + S I V FSP
Sbjct: 283 VVCCVNFSNDGKYLATGC-NRSAQIYDVDTGKKVHAFVDESEKDGDLYIRSVCFSPDGNY 341
Query: 690 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 749
LAT + DKTV+VWD TF GH + SLD+ + I S GD + + W I
Sbjct: 342 LATGAEDKTVKVWDIHTKKIQ-HTFYGHELDIYSLDYSSDG-RFIVSGSGDKKAKIWDIE 399
Query: 750 NGSCTRVF-------KGGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTK 801
G C K G + P GR +AA + +N+V + DA+T +GH
Sbjct: 400 KGKCAFTLGNEEVGPKNGVTSVAMSPD-GRLVAAGSLDNIVRLWDAQTGYFLERYEGHLD 458
Query: 802 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPTYPS 858
+ SV + P G+ LAS S D S+++W + SGS + NG+K S F P
Sbjct: 459 SVYSVAFSPDGKSLASGSLDKSLKLWDL-SGSRSRSRCRATFNGHKDFVLSVAFSPDGSW 517
Query: 859 LLVIGCYQSLELWNMSENKT-MTLTAHEGLIAALAVSTET---GYVASASHDKFVKLWK 913
L+ +S++ W+ T M L H+ + ++A+S + G A+ S D +LWK
Sbjct: 518 LISGSKDRSVQFWDPRNGTTHMMLQGHKNSVISVALSPKNNSHGVFATGSGDFRSRLWK 576
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Acts as component of the trfA-tupA corepressor complex which is involved in the repression of many genes in a wide variety of physiological processes. May also be involved in the derepression of at least some target genes. The complex is recruited to target genes by interaction with DNA-bound transcriptional repressors. The complex recruits histone deacetylases to produce a repressive chromatin structure, interacts with hypoacetylated N-terminal tails of histones H3 and H4 that have been programmed for repression by the action of histone deacetylases and interferes directly with the transcriptional machinery by associating with the RNA polymerase II mediator complex. Dictyostelium discoideum (taxid: 44689) |
| >sp|D3TLL6|LIS1_GLOMM Lissencephaly-1 homolog OS=Glossina morsitans morsitans PE=2 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 141/309 (45%), Gaps = 32/309 (10%)
Query: 630 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 689
RAS ++VI F L+ + D +W +T + + +L+ H+S + D+ F
Sbjct: 108 RASITRVI---FHPTYSLMLSASEDAVIKIWDFETGEYERSLKGHTSSVQDIAFDSQGKL 164
Query: 690 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 749
LA+ S D ++++WD ++T +GH +V S+ F P D + S D I+ W +
Sbjct: 165 LASCSADLSIKLWDFQQSYDCVKTMLGHDHNVSSVAFVP-AGDYVLSASRDQTIKMWEVA 223
Query: 750 NGSCTRVFKGGTAQMRF-QPHL-GRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSV 806
G C + + G +R + H+ G A+ + ++ + I ++ C+ L+ H ++ +
Sbjct: 224 TGYCVKTYSGHREWIRMVRVHMDGNIFASCSIDHSIRIWSINSRDCKAELRAHDHTVECI 283
Query: 807 CWDPS--------------------GELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 845
W P G LAS S D ++RVW VG G C+ L+ + N
Sbjct: 284 AWAPDISTTHINEAAGSDNKKGHHQGPFLASGSRDKTIRVWDVGVGL---CLFVLTGHDN 340
Query: 846 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS 904
FHP L+ +++ +W++ + M TL AH+ ++ + YV S S
Sbjct: 341 WVRELTFHPGGKYLVSASDDKTIRVWDLRNKRFMKTLYAHQHFCTSVDFHKKLPYVISGS 400
Query: 905 HDKFVKLWK 913
D VK+W+
Sbjct: 401 VDNTVKVWE 409
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Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes. Glossina morsitans morsitans (taxid: 37546) |
| >sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 13/260 (5%)
Query: 643 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 702
+ G+LLATGG D + LW + +L H+S + VR + + S ++RVW
Sbjct: 31 ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90
Query: 703 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--- 759
D + LRT MGH A++ SLDFHP + + S D I+ W I C ++G
Sbjct: 91 DLEA-AKILRTLMGHKANICSLDFHP-YGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQ 148
Query: 760 GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV 818
+RF P G++LA+AA++ V + D GHT P++ V + P+ LLAS
Sbjct: 149 AVRCLRFSPD-GKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASG 207
Query: 819 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 877
S D ++R W + C+ S +F+P L GC SL ++ +
Sbjct: 208 SSDRTIRFWDLEKFQVVSCIEG---EPGPVRSVLFNPDG-CCLYSGCQDSLRVYGWEPER 263
Query: 878 TM-TLTAHEGLIAALAVSTE 896
+ + G +A LA+ +
Sbjct: 264 CFDVVLVNWGKVADLAICND 283
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth. Mus musculus (taxid: 10090) |
| >sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 13/260 (5%)
Query: 643 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 702
+ G+LLATGG D + LW + +L H+S + VR + + S ++RVW
Sbjct: 31 ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90
Query: 703 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--- 759
D + LRT MGH A++ SLDFHP + + S D I+ W I C ++G
Sbjct: 91 DLEA-AKILRTLMGHKANICSLDFHP-YGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQ 148
Query: 760 GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV 818
+RF P G++LA+AA++ V + D GHT P++ V + P+ LLAS
Sbjct: 149 AVRCLRFSPD-GKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASG 207
Query: 819 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 877
S D ++R W + C+ S +F+P L GC SL ++ +
Sbjct: 208 SSDRTIRFWDLEKFQVVSCIEG---EPGPVRSVLFNPDG-CCLYSGCQDSLRVYGWEPER 263
Query: 878 TM-TLTAHEGLIAALAVSTE 896
+ + G +A LA+ +
Sbjct: 264 CFDVVLVNWGKVADLAICND 283
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 913 | ||||||
| 356507762 | 912 | PREDICTED: transcriptional corepressor L | 0.991 | 0.992 | 0.825 | 0.0 | |
| 356507764 | 903 | PREDICTED: transcriptional corepressor L | 0.981 | 0.992 | 0.816 | 0.0 | |
| 356563836 | 912 | PREDICTED: transcriptional corepressor L | 0.984 | 0.985 | 0.821 | 0.0 | |
| 225430178 | 910 | PREDICTED: transcriptional corepressor L | 0.981 | 0.984 | 0.832 | 0.0 | |
| 357466351 | 941 | NAD(P)H-quinone oxidoreductase subunit [ | 0.969 | 0.940 | 0.766 | 0.0 | |
| 449522548 | 900 | PREDICTED: transcriptional corepressor L | 0.974 | 0.988 | 0.785 | 0.0 | |
| 449441950 | 900 | PREDICTED: transcriptional corepressor L | 0.974 | 0.988 | 0.784 | 0.0 | |
| 356563834 | 903 | PREDICTED: transcriptional corepressor L | 0.974 | 0.985 | 0.813 | 0.0 | |
| 449441952 | 891 | PREDICTED: transcriptional corepressor L | 0.964 | 0.988 | 0.776 | 0.0 | |
| 356515484 | 892 | PREDICTED: transcriptional corepressor L | 0.805 | 0.823 | 0.825 | 0.0 |
| >gi|356507762|ref|XP_003522633.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1390 bits (3597), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 759/920 (82%), Positives = 806/920 (87%), Gaps = 15/920 (1%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQ QQQ Q QQ Q Q QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQQQQQHMQMQQLL 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q+ Q QQ Q+ QQQQQ QQQ QQQQQQQQQ PQ QQQ QQQQ RD AHLLNG
Sbjct: 121 LQRAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQSQQQQSQPQQQQSRDRAHLLNG 180
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
+ NGL+GN PGTANA+AT+MYEE+LKLP+ RD LDDAAMKQRFGENMGQLLDPN
Sbjct: 181 SANGLVGN-------PGTANALATKMYEERLKLPLQRDPLDDAAMKQRFGENMGQLLDPN 233
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAA GQPSGQVLHG AGGMSPQVQAR+QQLPGST DIK EI+PVLNPRAAGPE
Sbjct: 234 HASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAAGPE 293
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 359
GSLMG+PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKPF+QAPQPFHQ+QMLTPQHQQ
Sbjct: 294 GSLMGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQ 353
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNL SPSAS+ESRR RMLLNNR++ L KD LSN VGDVVSNVGSPL GG PR
Sbjct: 354 LMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPLQGGGPPFPR 413
Query: 420 GDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPAG-S 478
GDTDML+KLK+AQ+ QQQQQ QQ QQH LSNQQSQ+SNH++HQQDK+G G S
Sbjct: 414 GDTDMLMKLKLAQLQQQQQQSSTNAQQQQL-QQHVLSNQQSQTSNHSMHQQDKVGGGGGS 472
Query: 479 VTLDGSMSNSFRGNDQTG-----RKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHT 533
VT+DGSMSNSFRGNDQ RKRKQP SSSGPANSSGTANT GPSPSSAPSTPSTHT
Sbjct: 473 VTVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHT 532
Query: 534 PGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLD 593
PGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+AD+DR VEDGSLD
Sbjct: 533 PGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLD 592
Query: 594 DNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH 653
+NVESFLSHDDTDPRD GR MDVS+GF+F + NSVRASTSKV CCHFSSDGKLLA+GGH
Sbjct: 593 ENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGH 652
Query: 654 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 713
DK+ VLW+TD+LK K LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD DNPGYSLRT
Sbjct: 653 DKRVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRT 712
Query: 714 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRY 773
F GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT QMRFQP LGRY
Sbjct: 713 FTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQMRFQPRLGRY 772
Query: 774 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE 833
LAAAAEN+VSI D ETQACR SL+GHTKP+D VCWDPSGELLASVSEDSVRVWT+GSGSE
Sbjct: 773 LAAAAENIVSIFDVETQACRYSLKGHTKPVDCVCWDPSGELLASVSEDSVRVWTLGSGSE 832
Query: 834 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAV 893
GECVHELSCNGNKFH+ VFHPTYPSLLVIGCYQSLELWNMSENKTMTL+AH+GLI +LAV
Sbjct: 833 GECVHELSCNGNKFHASVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHDGLITSLAV 892
Query: 894 STETGYVASASHDKFVKLWK 913
ST G VASASHDKF+KLWK
Sbjct: 893 STVNGLVASASHDKFLKLWK 912
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507764|ref|XP_003522634.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1363 bits (3528), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 751/920 (81%), Positives = 797/920 (86%), Gaps = 24/920 (2%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQ QQQ Q QQ Q Q QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQQQQQHMQMQQLL 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q+ Q QQ Q+ QQQQQ QQQ QQQQQQQQQ PQ QQQ QQQQ RD AHLLNG
Sbjct: 121 LQRAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQSQQQQSQPQQQQSRDRAHLLNG 180
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
+ NGL+GN PGTANA+AT+MYEE+LKLP+ RD LDDAAMKQRFGENMGQLLDPN
Sbjct: 181 SANGLVGN-------PGTANALATKMYEERLKLPLQRDPLDDAAMKQRFGENMGQLLDPN 233
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAA GQPSGQVLHG AGGMSPQVQAR+QQLPGST DIK EI+PVLNPRAAGPE
Sbjct: 234 HASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAAGPE 293
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 359
GSLMG+PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKPF+QAPQPFHQ+QMLTPQHQQ
Sbjct: 294 GSLMGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQ 353
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNL SPSAS+ESRR RMLLNNR++ L KD LSN VGDVVSNVGSPL GG PR
Sbjct: 354 LMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPLQGGGPPFPR 413
Query: 420 GDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPAG-S 478
GDTDML+KLK+AQ+ QQQQQ QQ QQH LSNQQSQ+SNH++HQQDK+G G S
Sbjct: 414 GDTDMLMKLKLAQLQQQQQQSSTNAQQQQL-QQHVLSNQQSQTSNHSMHQQDKVGGGGGS 472
Query: 479 VTLDGSMSNSFRGNDQTG-----RKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHT 533
VT+DGSMSNSFRGNDQ RKRKQP SSSGPANSSGTANT GPSPSSAPSTPSTHT
Sbjct: 473 VTVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHT 532
Query: 534 PGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLD 593
PGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQL AD+DR VEDGSLD
Sbjct: 533 PGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQL---------ADVDRFVEDGSLD 583
Query: 594 DNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH 653
+NVESFLSHDDTDPRD GR MDVS+GF+F + NSVRASTSKV CCHFSSDGKLLA+GGH
Sbjct: 584 ENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGH 643
Query: 654 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 713
DK+ VLW+TD+LK K LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD DNPGYSLRT
Sbjct: 644 DKRVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRT 703
Query: 714 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRY 773
F GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT QMRFQP LGRY
Sbjct: 704 FTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQMRFQPRLGRY 763
Query: 774 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE 833
LAAAAEN+VSI D ETQACR SL+GHTKP+D VCWDPSGELLASVSEDSVRVWT+GSGSE
Sbjct: 764 LAAAAENIVSIFDVETQACRYSLKGHTKPVDCVCWDPSGELLASVSEDSVRVWTLGSGSE 823
Query: 834 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAV 893
GECVHELSCNGNKFH+ VFHPTYPSLLVIGCYQSLELWNMSENKTMTL+AH+GLI +LAV
Sbjct: 824 GECVHELSCNGNKFHASVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHDGLITSLAV 883
Query: 894 STETGYVASASHDKFVKLWK 913
ST G VASASHDKF+KLWK
Sbjct: 884 STVNGLVASASHDKFLKLWK 903
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563836|ref|XP_003550164.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1356 bits (3510), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 761/926 (82%), Positives = 807/926 (87%), Gaps = 27/926 (2%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQ QQQ Q Q QQQQQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQGQQQPQPQ-KLQHQQQQQ 119
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR----RDGAH 176
QQQ +QMQQILLQR QQQQQ QQQ QQQQQ QQQ QQ QQQ QQQQQ RD AH
Sbjct: 120 QQQHMQMQQILLQRAQQQQQQQQQQQQQQQQPQQQQQQQQPQQQHQQQQQPQQQGRDRAH 179
Query: 177 LLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQL 236
LLNG TNGL+GN P TANA+AT+MYEE+LKLP+ RDSL+DAAMKQRFG+ Q+
Sbjct: 180 LLNGGTNGLVGN-------PSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGD---QI 229
Query: 237 LDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRA 296
LDPNHAS +KS+AATGQPSGQVLHG AG MSPQVQARSQQLPGSTPDIKSEINPVLNPRA
Sbjct: 230 LDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRA 289
Query: 297 AGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKP-FIQAPQPFHQIQMLTP 355
AGPEGSL+ +PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKP FIQ+PQ FHQ+ MLTP
Sbjct: 290 AGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQQFHQLPMLTP 349
Query: 356 QHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGG 414
QHQQ L+LAQQNL SPSASD+SRR RMLLNNR+M + KDGLSN VGD+VSNVGSPL AGG
Sbjct: 350 QHQQQLMLAQQNLASPSASDDSRRIRMLLNNRNMGVTKDGLSNPVGDIVSNVGSPLQAGG 409
Query: 415 HLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMG 474
PR DTDML+KLK+AQ Q QQQQ QQHTLSNQQSQ+SNH++HQQDKMG
Sbjct: 410 PAFPRSDTDMLMKLKLAQ--LQHQQQQNANPPQQQLQQHTLSNQQSQTSNHSMHQQDKMG 467
Query: 475 PAGS--VTLDGSMSNSFRGNDQ-----TGRKRKQPVSSSGPANSSGTANTAGPSPSSAPS 527
G V +DGSMSNSFRGNDQ TGRKRKQP +SSGPANSSGTANTAGPSPSSAPS
Sbjct: 468 GGGGSSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPS 526
Query: 528 TPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLV 587
TPSTHTPGDV+SMP LPHSG++SKPLMMF DGAGTLTSPSNQLWDDKDLEL+AD+DR V
Sbjct: 527 TPSTHTPGDVMSMPVLPHSGSSSKPLMMFSADGAGTLTSPSNQLWDDKDLELQADVDRFV 586
Query: 588 EDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKL 647
EDGSLDDNVESFLS DDTD RD GR MDVS+GF+F E NSVRAST+KV CCHFSSDGKL
Sbjct: 587 EDGSLDDNVESFLSPDDTDLRDTVGRCMDVSKGFTFSEINSVRASTTKVGCCHFSSDGKL 646
Query: 648 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707
LA+GGHDKKAVLW TD+LK K LEEH+SLITDVRFSPSMPRLATSS DKTVRVWD +NP
Sbjct: 647 LASGGHDKKAVLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSHDKTVRVWDVENP 706
Query: 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQ 767
GYSLRTF GHS+ VMSLDFHPNKDDLICSCD DGEIRYWSINNG+C RV KGG QMRFQ
Sbjct: 707 GYSLRTFTGHSSPVMSLDFHPNKDDLICSCDADGEIRYWSINNGNCARVSKGGAVQMRFQ 766
Query: 768 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWT 827
P LGRYLAAAAENVVSILD ETQA R SL+GHTK I SVCWDPSGE LASVSEDSVRVWT
Sbjct: 767 PRLGRYLAAAAENVVSILDVETQASRYSLKGHTKSIRSVCWDPSGEFLASVSEDSVRVWT 826
Query: 828 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGL 887
+GSGSEGECVHELSCNGNKFHSCVFHPTY SLLV+GCYQSLELWNM+ENKTMTL+AHEGL
Sbjct: 827 LGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGL 886
Query: 888 IAALAVSTETGYVASASHDKFVKLWK 913
IAALAVST G VASASHDKFVKLWK
Sbjct: 887 IAALAVSTVNGLVASASHDKFVKLWK 912
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430178|ref|XP_002284900.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1356 bits (3510), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 772/927 (83%), Positives = 816/927 (88%), Gaps = 31/927 (3%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQ QQ Q Q QQ QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQQPQHQQQQQQQQQLQMQQL 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q RHAQQQQQ QQQ QQQQQQQQQ QQQQ QQQQRRDGAHLLNG
Sbjct: 121 LLQ----------RHAQQQQQQQQQQQQQQQQQQQ-----QQQQQPQQQQRRDGAHLLNG 165
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
TNGL+GND LMR NP TANA+AT+MYEE+LKLP+ RDSLDDA MKQRF EN+GQLLDPN
Sbjct: 166 TTNGLVGNDPLMRTNPATANALATKMYEERLKLPIQRDSLDDATMKQRFSENVGQLLDPN 225
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HA+ +KSAAA GQPSGQVLH +AGGMSPQVQAR+QQLPGSTPDIKSE+NPVLNPRA GPE
Sbjct: 226 HATILKSAAAAGQPSGQVLHVSAGGMSPQVQARNQQLPGSTPDIKSEMNPVLNPRAGGPE 285
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQA-PQPFHQIQMLTPQHQQ 359
GSL+GIPGSNQGGNNLTLKGWPLTGL+ LRSGLLQQ KPFIQA PQPFHQ+QML QQ
Sbjct: 286 GSLIGIPGSNQGGNNLTLKGWPLTGLDQLRSGLLQQPKPFIQAAPQPFHQLQMLPQHQQQ 345
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
LLLAQQ+LTSP SDESRR RMLLNNR+M+LGKDG SNS+GDV NVGSPL G +LPR
Sbjct: 346 LLLAQQSLTSP-PSDESRRLRMLLNNRNMNLGKDGPSNSIGDV-PNVGSPLQPGCAVLPR 403
Query: 420 GDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSS--------NHNLHQQD 471
GDT+ML+KLKMAQMH QQQQQQQQQQ ++ PQQ Q + NHN+HQQD
Sbjct: 404 GDTEMLMKLKMAQMHHQQQQQQQQQQNSNQPQQQQQQQLQQHALSSQQSQSSNHNMHQQD 463
Query: 472 KMGPAGSVTLDGSMSNSFRGNDQ-----TGRKRKQPVSSSGPANSSGTANTAGPSPSSAP 526
KMG AGS+T+DGSMSNSFRGNDQ TGRKRKQPVSSSGPANSSGTANTAGPSPSSAP
Sbjct: 464 KMGGAGSITVDGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAP 523
Query: 527 STPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRL 586
STPSTHTPGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+ADMDR
Sbjct: 524 STPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADMDRF 583
Query: 587 VEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK 646
VEDGSLDDNVESFLSHDDTDPRD GR MDVS+GF+F E +SVRAS SKVICCHFSSDGK
Sbjct: 584 VEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFTEVSSVRASASKVICCHFSSDGK 643
Query: 647 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 706
LLA+GGHDKKAVLW+TDTLK+KT LEEHS LITDVRFSPSMPRLATSSFDKTVRVWDAD+
Sbjct: 644 LLASGGHDKKAVLWYTDTLKTKTTLEEHSMLITDVRFSPSMPRLATSSFDKTVRVWDADS 703
Query: 707 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 766
YSLRTF GHSASVMSLDFHPN+DDLICSCDGDGEIRYW+I NGSC RVFKGGTAQMRF
Sbjct: 704 TSYSLRTFTGHSASVMSLDFHPNQDDLICSCDGDGEIRYWNIKNGSCARVFKGGTAQMRF 763
Query: 767 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVW 826
QP GRYLAAAAENVVSILD ETQACR SLQGHTKPI SVCWDPSGE LASVSEDSVRVW
Sbjct: 764 QPRHGRYLAAAAENVVSILDVETQACRHSLQGHTKPIHSVCWDPSGEFLASVSEDSVRVW 823
Query: 827 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG 886
T+GSG+EGECVHELSCNGNKFHSCVFHPTY SLLVIGCYQSLELWNMSENKTMTL+AH+G
Sbjct: 824 TLGSGNEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHDG 883
Query: 887 LIAALAVSTETGYVASASHDKFVKLWK 913
LIAALAVST +G VASASHDK VKLWK
Sbjct: 884 LIAALAVSTVSGLVASASHDKIVKLWK 910
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357466351|ref|XP_003603460.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] gi|355492508|gb|AES73711.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1350 bits (3493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 743/969 (76%), Positives = 796/969 (82%), Gaps = 84/969 (8%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQ Q QQ Q Q QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQ 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q RHAQQQQQ QQ QQ Q Q QQ QQQQ RD HLLNG
Sbjct: 121 LLMQ---------RHAQQQQQQQQHQQQPQSQPQQ--------PQPQQQQNRDRTHLLNG 163
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
+ NGL GN P TANA+AT+MYEE+LK P RDSLDDAAMKQRFGENMGQLLDPN
Sbjct: 164 SANGLAGN-------PATANAIATKMYEERLKGPPQRDSLDDAAMKQRFGENMGQLLDPN 216
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAA GQPSGQVLHGTAGGMSPQVQARSQQLPGST DIKSEINPVLNPRAAGPE
Sbjct: 217 HASILKSAAAGGQPSGQVLHGTAGGMSPQVQARSQQLPGSTTDIKSEINPVLNPRAAGPE 276
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQH-QQ 359
GSL+GI GSNQG NNLTLKGWPLTGLE LRSGLLQQQKP++QAPQPFHQ+QMLTPQH QQ
Sbjct: 277 GSLLGISGSNQGNNNLTLKGWPLTGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQ 336
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQ+L SPSAS+ESRR RMLLNNR++ L KDGLSN GD++SNVGSPL GG PR
Sbjct: 337 LMLAQQSLASPSASEESRRLRMLLNNRNIGLNKDGLSNPGGDMLSNVGSPLHGGGPPFPR 396
Query: 420 GDTDMLIKLKMAQMHQQQQQQQQQQQQNSNP-----QQHTLSNQQSQSSNHNLHQQDKM- 473
GDTDML+KLK+AQ+ QQQQQQQ QQQ + N QQH LSNQQSQ+SNH++HQQDK+
Sbjct: 397 GDTDMLMKLKLAQLQQQQQQQQHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVG 456
Query: 474 GPAGSVTLDGSMSNSFRGNDQT-------------------------------------- 495
G GSVT+DGSMSNS+RGNDQ
Sbjct: 457 GGGGSVTMDGSMSNSYRGNDQIKVQPTEQSEEVLMFCGIPPFACFWSKDEILNDGWLHSP 516
Query: 496 -----------GRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALP 544
GRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGD +SMPALP
Sbjct: 517 IFAIVVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALP 576
Query: 545 HSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD 604
H+ ++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+AD+DR V+DGSLDDNVESFLS DD
Sbjct: 577 HNSSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDD 636
Query: 605 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT 664
TDPRD GR MDVS+GF+F + NSVRAS+SK+ CCHFSSDGKLLA+GGHDKKAV+W+ D+
Sbjct: 637 TDPRDPVGRCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADS 696
Query: 665 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 724
LK K LEEHS+LITDVRFS SMPRLATSSFDKTVRVWD DNPGYSLRTF GHS SVMSL
Sbjct: 697 LKQKAILEEHSALITDVRFSASMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSL 756
Query: 725 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI 784
DFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT QMRFQP LGRYLAAAAEN+VSI
Sbjct: 757 DFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQMRFQPRLGRYLAAAAENIVSI 816
Query: 785 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG 844
LD ETQACR SL+GHTK IDSVCWDPSGELLASVSEDSVR+WT+ EGECVHELSCNG
Sbjct: 817 LDVETQACRYSLKGHTKTIDSVCWDPSGELLASVSEDSVRIWTL----EGECVHELSCNG 872
Query: 845 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 904
+KFHSCVFHPT+PSLLVIGCYQSLELWNM+ENKTMTL+AH+GLI ALAVST G VASAS
Sbjct: 873 SKFHSCVFHPTFPSLLVIGCYQSLELWNMAENKTMTLSAHDGLITALAVSTVNGLVASAS 932
Query: 905 HDKFVKLWK 913
HDKF+KLWK
Sbjct: 933 HDKFIKLWK 941
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522548|ref|XP_004168288.1| PREDICTED: transcriptional corepressor LEUNIG-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1345 bits (3482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 725/923 (78%), Positives = 797/923 (86%), Gaps = 33/923 (3%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKA+AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHS+VAASYIETQLIKAREQQQ QQQQQQQ Q QQQQ Q
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQH----------- 109
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
MQ +L+QRHAQQQQQ QQQ Q QQQQQ Q Q QQQ QQQQQRRDGA LLNG
Sbjct: 110 ------MQMLLMQRHAQQQQQQQQQQQHQQQQQPQ---QQQQQSQQQQQQRRDGAQLLNG 160
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
++NG +GND LMRQNPG+ NA+AT+MYE++LKLP+ RDSLDD AMKQR+G+N+GQLLDPN
Sbjct: 161 SSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDGAMKQRYGDNVGQLLDPN 220
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAAT Q SGQVLHG+ GGMSPQVQ RSQQLPGSTPDIK+EINPVLNPRAAGPE
Sbjct: 221 HASILKSAAATSQSSGQVLHGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPE 280
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 359
GSLMGIPGSN GGNNLTLKGWPLTGL+ LRSG+LQQQKPFIQAPQ F Q+QMLTPQHQQ
Sbjct: 281 GSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQ 340
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNLTSPS +D+ RR RMLLN R + KDGLSNSVGDVV NVGSPL AG LLPR
Sbjct: 341 LMLAQQNLTSPSVNDDGRRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPR 397
Query: 420 GD-TDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQ--HTLSNQQSQSSNHNLHQQDKMGPA 476
GD TDM++K+KMAQ+ QQQQQQQ QQ Q HTLSNQQSQSSNHN+HQQ+K+G A
Sbjct: 398 GDNTDMILKIKMAQLQQQQQQQQSSSQQQQQQQLQQHTLSNQQSQSSNHNMHQQEKIGGA 457
Query: 477 GSVTLDGSMSNSFRGNDQ-----TGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 531
GSVT+DGSMSNSFRGNDQ TGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST
Sbjct: 458 GSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 517
Query: 532 HTPGDVISMPALPHSGTTSKPL-MMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDG 590
HTPGD ISMPALPHSG++SKPL MMF +DG GT TSPSNQLWDDK+LEL+ADMDR VEDG
Sbjct: 518 HTPGDAISMPALPHSGSSSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDG 577
Query: 591 SLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT 650
SLDDNV+SFLSHDD DPRD GR MD S+GF+F E NSVRASTSKV CHFSSDGKLL +
Sbjct: 578 SLDDNVDSFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVS 637
Query: 651 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 710
GGHDKKAVLW+T+ LK KT+LEEH++++TDVRFSPSMPRLATSSFD+TVRVWDADN YS
Sbjct: 638 GGHDKKAVLWYTENLKPKTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYS 697
Query: 711 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 770
LRTF GHSASVMSLDFHP KDD ICSCDGDGEIRYW+I NGSC VFKGGT MRFQP L
Sbjct: 698 LRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGPMRFQPRL 757
Query: 771 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 830
GRY +A +N+V+I D ETQA SL+GHTK + S+CWDPSGE LASVSEDSVRVWT+ S
Sbjct: 758 GRYFSAVVDNIVTIFDVETQARVHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLAS 817
Query: 831 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA 890
G+EGE +HELSCNGNKFHSCVFHPTY +LLVIGCY+SLELWN +ENKTMTL+AHEGL+++
Sbjct: 818 GNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSS 877
Query: 891 LAVSTETGYVASASHDKFVKLWK 913
LAVS +G VASASHD+F+KLWK
Sbjct: 878 LAVSAASGLVASASHDRFIKLWK 900
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441950|ref|XP_004138745.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1343 bits (3476), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 724/923 (78%), Positives = 796/923 (86%), Gaps = 33/923 (3%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKA+AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHS+VAASYIETQLIKAREQQQ QQQQQQQ Q QQQQ Q
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQH----------- 109
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
MQ +L+QRHAQQQQQ QQQ Q QQQQQ Q Q QQQ QQQQQRRDGA LLNG
Sbjct: 110 ------MQMLLMQRHAQQQQQQQQQQQHQQQQQPQ---QQQQQSQQQQQQRRDGAQLLNG 160
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
++NG +GND LMRQNPG+ NA+AT+MYE++LKLP+ RDSLDD AMKQR+G+N+GQLLDPN
Sbjct: 161 SSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDGAMKQRYGDNVGQLLDPN 220
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAAT Q SGQVLHG+ GGMSPQVQ RSQQLPGSTPDIK+EINPVLNPRAAGPE
Sbjct: 221 HASILKSAAATSQSSGQVLHGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPE 280
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 359
GSLMGIPGSN GGNNLTLKGWPLTGL+ LRSG+LQQQKPFIQAPQ F Q+QMLTPQHQQ
Sbjct: 281 GSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQ 340
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNLTSPS +D+ RR RMLLN R + KDGLSNSVGDVV NVGSPL AG LLPR
Sbjct: 341 LMLAQQNLTSPSVNDDGRRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPR 397
Query: 420 GD-TDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQ--HTLSNQQSQSSNHNLHQQDKMGPA 476
GD TDM++K+KMAQ+ QQQQQQQ QQ Q H LSNQQSQSSNHN+HQQ+K+G A
Sbjct: 398 GDNTDMILKIKMAQLQQQQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGA 457
Query: 477 GSVTLDGSMSNSFRGNDQ-----TGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 531
GSVT+DGSMSNSFRGNDQ TGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST
Sbjct: 458 GSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 517
Query: 532 HTPGDVISMPALPHSGTTSKPL-MMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDG 590
HTPGD ISMPALPHSG++SKPL MMF +DG GT TSPSNQLWDDK+LEL+ADMDR VEDG
Sbjct: 518 HTPGDAISMPALPHSGSSSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDG 577
Query: 591 SLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT 650
SLDDNV+SFLSHDD DPRD GR MD S+GF+F E NSVRASTSKV CHFSSDGKLL +
Sbjct: 578 SLDDNVDSFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVS 637
Query: 651 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 710
GGHDKKAVLW+T+ LK KT+LEEH++++TDVRFSPSMPRLATSSFD+TVRVWDADN YS
Sbjct: 638 GGHDKKAVLWYTENLKPKTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYS 697
Query: 711 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 770
LRTF GHSASVMSLDFHP KDD ICSCDGDGEIRYW+I NGSC VFKGGT MRFQP L
Sbjct: 698 LRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGPMRFQPRL 757
Query: 771 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 830
GRY +A +N+V+I D ETQA SL+GHTK + S+CWDPSGE LASVSEDSVRVWT+ S
Sbjct: 758 GRYFSAVVDNIVTIFDVETQARVHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLAS 817
Query: 831 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA 890
G+EGE +HELSCNGNKFHSCVFHPTY +LLVIGCY+SLELWN +ENKTMTL+AHEGL+++
Sbjct: 818 GNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSS 877
Query: 891 LAVSTETGYVASASHDKFVKLWK 913
LAVS +G VASASHD+F+KLWK
Sbjct: 878 LAVSAASGLVASASHDRFIKLWK 900
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563834|ref|XP_003550163.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1330 bits (3442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 753/926 (81%), Positives = 798/926 (86%), Gaps = 36/926 (3%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQ QQQ Q Q QQQQQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQGQQQPQPQ-KLQHQQQQQ 119
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR----RDGAH 176
QQQ +QMQQILLQR QQQQQ QQQ QQQQQ QQQ QQ QQQ QQQQQ RD AH
Sbjct: 120 QQQHMQMQQILLQRAQQQQQQQQQQQQQQQQPQQQQQQQQPQQQHQQQQQPQQQGRDRAH 179
Query: 177 LLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQL 236
LLNG TNGL+GN P TANA+AT+MYEE+LKLP+ RDSL+DAAMKQRFG+ Q+
Sbjct: 180 LLNGGTNGLVGN-------PSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGD---QI 229
Query: 237 LDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRA 296
LDPNHAS +KS+AATGQPSGQVLHG AG MSPQVQARSQQLPGSTPDIKSEINPVLNPRA
Sbjct: 230 LDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRA 289
Query: 297 AGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKP-FIQAPQPFHQIQMLTP 355
AGPEGSL+ +PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKP FIQ+PQ FHQ+ MLTP
Sbjct: 290 AGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQQFHQLPMLTP 349
Query: 356 QHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGG 414
QHQQ L+LAQQNL SPSASD+SRR RMLLNNR+M + KDGLSN VGD+VSNVGSPL AGG
Sbjct: 350 QHQQQLMLAQQNLASPSASDDSRRIRMLLNNRNMGVTKDGLSNPVGDIVSNVGSPLQAGG 409
Query: 415 HLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMG 474
PR DTDML+KLK+AQ Q QQQQ QQHTLSNQQSQ+SNH++HQQDKMG
Sbjct: 410 PAFPRSDTDMLMKLKLAQ--LQHQQQQNANPPQQQLQQHTLSNQQSQTSNHSMHQQDKMG 467
Query: 475 PAGS--VTLDGSMSNSFRGNDQ-----TGRKRKQPVSSSGPANSSGTANTAGPSPSSAPS 527
G V +DGSMSNSFRGNDQ TGRKRKQP +SSGPANSSGTANTAGPSPSSAPS
Sbjct: 468 GGGGSSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPS 526
Query: 528 TPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLV 587
TPSTHTPGDV+SMP LPHSG++SKPLMMF DGAGTLTSPSNQL AD+DR V
Sbjct: 527 TPSTHTPGDVMSMPVLPHSGSSSKPLMMFSADGAGTLTSPSNQL---------ADVDRFV 577
Query: 588 EDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKL 647
EDGSLDDNVESFLS DDTD RD GR MDVS+GF+F E NSVRAST+KV CCHFSSDGKL
Sbjct: 578 EDGSLDDNVESFLSPDDTDLRDTVGRCMDVSKGFTFSEINSVRASTTKVGCCHFSSDGKL 637
Query: 648 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707
LA+GGHDKKAVLW TD+LK K LEEH+SLITDVRFSPSMPRLATSS DKTVRVWD +NP
Sbjct: 638 LASGGHDKKAVLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSHDKTVRVWDVENP 697
Query: 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQ 767
GYSLRTF GHS+ VMSLDFHPNKDDLICSCD DGEIRYWSINNG+C RV KGG QMRFQ
Sbjct: 698 GYSLRTFTGHSSPVMSLDFHPNKDDLICSCDADGEIRYWSINNGNCARVSKGGAVQMRFQ 757
Query: 768 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWT 827
P LGRYLAAAAENVVSILD ETQA R SL+GHTK I SVCWDPSGE LASVSEDSVRVWT
Sbjct: 758 PRLGRYLAAAAENVVSILDVETQASRYSLKGHTKSIRSVCWDPSGEFLASVSEDSVRVWT 817
Query: 828 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGL 887
+GSGSEGECVHELSCNGNKFHSCVFHPTY SLLV+GCYQSLELWNM+ENKTMTL+AHEGL
Sbjct: 818 LGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGL 877
Query: 888 IAALAVSTETGYVASASHDKFVKLWK 913
IAALAVST G VASASHDKFVKLWK
Sbjct: 878 IAALAVSTVNGLVASASHDKFVKLWK 903
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441952|ref|XP_004138746.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1320 bits (3415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 717/923 (77%), Positives = 787/923 (85%), Gaps = 42/923 (4%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKA+AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHS+VAASYIETQLIKAREQQQ QQQQQQQ Q QQQQ Q
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQH----------- 109
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
MQ +L+QRHAQQQQQ QQQ Q QQQQQ Q Q QQQ QQQQQRRDGA LLNG
Sbjct: 110 ------MQMLLMQRHAQQQQQQQQQQQHQQQQQPQ---QQQQQSQQQQQQRRDGAQLLNG 160
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
++NG +GND LMRQNPG+ NA+AT+MYE++LKLP+ RDSLDD AMKQR+G+N+GQLLDPN
Sbjct: 161 SSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDGAMKQRYGDNVGQLLDPN 220
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAAT Q SGQVLHG+ GGMSPQVQ RSQQLPGSTPDIK+EINPVLNPRAAGPE
Sbjct: 221 HASILKSAAATSQSSGQVLHGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPE 280
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 359
GSLMGIPGSN GGNNLTLKGWPLTGL+ LRSG+LQQQKPFIQAPQ F Q+QMLTPQHQQ
Sbjct: 281 GSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQ 340
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNLTSPS +D+ RR RMLLN R + KDGLSNSVGDVV NVGSPL AG LLPR
Sbjct: 341 LMLAQQNLTSPSVNDDGRRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPR 397
Query: 420 GD-TDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQ--HTLSNQQSQSSNHNLHQQDKMGPA 476
GD TDM++K+KMAQ+ QQQQQQQ QQ Q H LSNQQSQSSNHN+HQQ+K+G A
Sbjct: 398 GDNTDMILKIKMAQLQQQQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGA 457
Query: 477 GSVTLDGSMSNSFRGNDQ-----TGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 531
GSVT+DGSMSNSFRGNDQ TGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST
Sbjct: 458 GSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 517
Query: 532 HTPGDVISMPALPHSGTTSKPL-MMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDG 590
HTPGD ISMPALPHSG++SKPL MMF +DG GT TSPSNQL ADMDR VEDG
Sbjct: 518 HTPGDAISMPALPHSGSSSKPLTMMFNSDGTGTFTSPSNQL---------ADMDRYVEDG 568
Query: 591 SLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT 650
SLDDNV+SFLSHDD DPRD GR MD S+GF+F E NSVRASTSKV CHFSSDGKLL +
Sbjct: 569 SLDDNVDSFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVS 628
Query: 651 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 710
GGHDKKAVLW+T+ LK KT+LEEH++++TDVRFSPSMPRLATSSFD+TVRVWDADN YS
Sbjct: 629 GGHDKKAVLWYTENLKPKTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYS 688
Query: 711 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 770
LRTF GHSASVMSLDFHP KDD ICSCDGDGEIRYW+I NGSC VFKGGT MRFQP L
Sbjct: 689 LRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGPMRFQPRL 748
Query: 771 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 830
GRY +A +N+V+I D ETQA SL+GHTK + S+CWDPSGE LASVSEDSVRVWT+ S
Sbjct: 749 GRYFSAVVDNIVTIFDVETQARVHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLAS 808
Query: 831 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA 890
G+EGE +HELSCNGNKFHSCVFHPTY +LLVIGCY+SLELWN +ENKTMTL+AHEGL+++
Sbjct: 809 GNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSS 868
Query: 891 LAVSTETGYVASASHDKFVKLWK 913
LAVS +G VASASHD+F+KLWK
Sbjct: 869 LAVSAASGLVASASHDRFIKLWK 891
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515484|ref|XP_003526430.1| PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1218 bits (3151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 619/750 (82%), Positives = 663/750 (88%), Gaps = 15/750 (2%)
Query: 172 RDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGE 231
RD HLLNG+ NGL+GN PGTANA+AT+MYEE+LKLP+ RDSLDDAA KQRFGE
Sbjct: 150 RDRPHLLNGSANGLVGN-------PGTANALATKMYEERLKLPLQRDSLDDAATKQRFGE 202
Query: 232 NMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPV 291
NMGQLLDPNHA +KSAAA GQPSGQVLHG AGGMSPQVQAR+QQLPGST DIK EI+PV
Sbjct: 203 NMGQLLDPNHAPILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPV 262
Query: 292 LNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQ 351
LNPRA GPEGSLMG+PGSN G NNLTLKGWPLTGLE LRSGLLQQQKPF+QAPQPFHQ+Q
Sbjct: 263 LNPRAVGPEGSLMGMPGSNPGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQ 322
Query: 352 MLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPL 410
MLTPQHQQ L+LAQQNL SPSAS+ESRR RMLLNNR++ L KDGLSN VGDVVSNVGSPL
Sbjct: 323 MLTPQHQQQLMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDGLSNPVGDVVSNVGSPL 382
Query: 411 PAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQ 470
GG PRGDTDML+KLK+AQ+ QQQQQQ Q QQHTLSNQQSQ+SNH++HQQ
Sbjct: 383 QGGGPPFPRGDTDMLVKLKLAQLQQQQQQQSSTNAQQQQLQQHTLSNQQSQTSNHSMHQQ 442
Query: 471 DKMGPAG--SVTLDGSMSNSFRGNDQT-----GRKRKQPVSSSGPANSSGTANTAGPSPS 523
DK+G G SVT+DGSMSNSFRGNDQ GRKRKQP SSSGPANSSGTANT GPSPS
Sbjct: 443 DKVGGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSSGTANTTGPSPS 502
Query: 524 SAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADM 583
SAPSTPSTHTPGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+AD+
Sbjct: 503 SAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADV 562
Query: 584 DRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 643
DR VEDGSLD+NVESFLSHDDTDPRD GR MDVS+GF+F + NSVRASTSKV CCHFSS
Sbjct: 563 DRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVSCCHFSS 622
Query: 644 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703
DGKLLA+GGHDKK VLW+TD+LK K LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD
Sbjct: 623 DGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 682
Query: 704 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 763
DNPGYSLRTF GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT Q
Sbjct: 683 VDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQ 742
Query: 764 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV 823
MRFQP LGRYLAAAAEN+VSI D ETQ CR SL+GHTKP+ VCWDPSGELLASVSEDSV
Sbjct: 743 MRFQPRLGRYLAAAAENIVSIFDVETQVCRYSLKGHTKPVVCVCWDPSGELLASVSEDSV 802
Query: 824 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 883
RVWT+GSGS+GECVHELSCNGNKFH VFHPTYPSLLVIGCYQSLELWNMSENKTMTL+A
Sbjct: 803 RVWTLGSGSDGECVHELSCNGNKFHKSVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSA 862
Query: 884 HEGLIAALAVSTETGYVASASHDKFVKLWK 913
H+GLI +LAVST G VASASHDKF+KLWK
Sbjct: 863 HDGLITSLAVSTVNGLVASASHDKFLKLWK 892
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 913 | ||||||
| DICTYBASE|DDB_G0282189 | 579 | tupA "transcriptional represso | 0.396 | 0.625 | 0.293 | 3.4e-26 | |
| ASPGD|ASPL0000006214 | 434 | AN6385 [Emericella nidulans (t | 0.277 | 0.582 | 0.311 | 4.3e-24 | |
| TAIR|locus:2060560 | 554 | LIS "AT2G41500" [Arabidopsis t | 0.327 | 0.539 | 0.276 | 5.3e-24 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.291 | 0.195 | 0.294 | 8.1e-24 | |
| UNIPROTKB|Q8N136 | 415 | WDR69 "Outer row dynein assemb | 0.249 | 0.549 | 0.307 | 8.6e-24 | |
| UNIPROTKB|Q5M786 | 334 | wdr5 "WD repeat-containing pro | 0.301 | 0.823 | 0.262 | 1.3e-23 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.292 | 0.797 | 0.265 | 2.8e-23 | |
| UNIPROTKB|Q0P593 | 415 | WDR69 "Outer row dynein assemb | 0.242 | 0.532 | 0.306 | 7.6e-23 | |
| UNIPROTKB|G3N3E5 | 308 | WDR5 "WD repeat-containing pro | 0.262 | 0.779 | 0.275 | 1.6e-22 | |
| UNIPROTKB|Q2KIG2 | 334 | WDR5 "WD repeat-containing pro | 0.262 | 0.718 | 0.275 | 1.6e-22 |
| DICTYBASE|DDB_G0282189 tupA "transcriptional repressor TUP1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 3.4e-26, P = 3.4e-26
Identities = 117/399 (29%), Positives = 183/399 (45%)
Query: 539 SMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVES 598
S P+L + P M G + +G S +N ++ +L + DM+ + E+ + E
Sbjct: 191 SFPSLSPLDSNRHPKEM-GNNMSGNSMSMNN---NNNNLNKKPDMEEVKEEDRRRHDTEM 246
Query: 599 FLSHDDTDPRD-AGGRGMDVSQGFSFKEANSVRASTSKVICC-HFSSDGKLLATGGHDKK 656
+ D G V + ++++ ++ V+CC +FS+DGK LATG + +
Sbjct: 247 SEENGKEKGTDWLVGYNPSVQTNLNIDLLHNLQHNS--VVCCVNFSNDGKYLATGCN-RS 303
Query: 657 AVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 711
A ++ DT K + S I V FSP LAT + DKTV+VWD
Sbjct: 304 AQIYDVDTGKKVHAFVDESEKDGDLYIRSVCFSPDGNYLATGAEDKTVKVWDIHTKKIQ- 362
Query: 712 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------KGGTAQM 764
TF GH + SLD+ + I S GD + + W I G C K G +
Sbjct: 363 HTFYGHELDIYSLDYSSD-GRFIVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNGVTSV 421
Query: 765 RFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S 822
P GR +AA + +N+V + DA+T +GH + SV + P G+ LAS S D S
Sbjct: 422 AMSPD-GRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASGSLDKS 480
Query: 823 VRVWTV-GSGSEGECVHELSCNGNKFH--SCVFHPTYPSLLVIGCY-QSLELWNMSENKT 878
+++W + GS S C + NG+K S F P S L+ G +S++ W+ T
Sbjct: 481 LKLWDLSGSRSRSRC--RATFNGHKDFVLSVAFSPD-GSWLISGSKDRSVQFWDPRNGTT 537
Query: 879 -MTLTAHEGLIAALAVSTET---GYVASASHDKFVKLWK 913
M L H+ + ++A+S + G A+ S D +LWK
Sbjct: 538 HMMLQGHKNSVISVALSPKNNSHGVFATGSGDFRSRLWK 576
|
|
| ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 4.3e-24, P = 4.3e-24
Identities = 87/279 (31%), Positives = 137/279 (49%)
Query: 641 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 700
FS DG+LLA+G +D LW + K LE HSS + V FSP+ LA+ S D T++
Sbjct: 49 FSPDGRLLASGSNDTTIKLWDPASGGLKQTLEGHSSSVQSVAFSPNGQLLASGSSDTTIK 108
Query: 701 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 760
+W++ + T GHS V S+ F PN G++ W+ GS +G
Sbjct: 109 LWNSASDSLK-HTMEGHSDRVESVAFSPN-----------GQL--WNPAIGSLKHTIEGH 154
Query: 761 T---AQMRFQPHLGRYLAA-AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 816
+ + F P G+ LA+ +AE + + D+ T + +L GH+ + + + P G LLA
Sbjct: 155 SDWVLSVAFSPD-GQLLASGSAEKTIKLWDSATCGLKHTLGGHSNWVLPLVFSPDGRLLA 213
Query: 817 SVSEDS-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS-LELWNMS 874
S S D+ +++W SGS H L + NK S F P LL G + ++LW+ +
Sbjct: 214 SGSNDATIKLWDPPSGS---LKHTLEGHSNKIESLAFSPN-GQLLASGSSDATIKLWDTA 269
Query: 875 ENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912
TL H ++ ++ S ++ + S S D +KLW
Sbjct: 270 TGSFRHTLKGHSDMVLSVVFSPDSQLLESGSGDNTIKLW 308
|
|
| TAIR|locus:2060560 LIS "AT2G41500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 5.3e-24, Sum P(2) = 5.3e-24
Identities = 88/318 (27%), Positives = 144/318 (45%)
Query: 608 RDAGGRGMDVSQGFSFKEANSVRASTSK------VICCHFSSDGKLLATGGHDKKAVLWH 661
RD MD ++ K A + S + C FS DGK+LAT LW
Sbjct: 224 RDDPDEDMDAETKWALKHAKHMALDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWE 283
Query: 662 TDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS 720
+ + L++H TDV FSP LAT+S D+T ++W D G L+TF GH
Sbjct: 284 MPQVTNTIAVLKDHKERATDVVFSPVDDCLATASADRTAKLWKTD--GTLLQTFEGHLDR 341
Query: 721 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAA 777
+ + FHP+ + + D R W IN G+ + +G + + FQ +
Sbjct: 342 LARVAFHPS-GKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCG 400
Query: 778 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGEC 836
+++ + D T L QGH KP+ SV + P+G LAS ED+ R+W +
Sbjct: 401 LDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKS--- 457
Query: 837 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSE-NKTMTLTAHEGLIAALAVS 894
++ + + N + P L Y + +W+ + + +L HE +A+L ++
Sbjct: 458 LYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDIT 517
Query: 895 TETGYVASASHDKFVKLW 912
++ +A+ SHD+ +KLW
Sbjct: 518 ADSSCIATVSHDRTIKLW 535
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 8.1e-24, Sum P(2) = 8.1e-24
Identities = 82/278 (29%), Positives = 138/278 (49%)
Query: 641 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 700
FS DGK L +G +D +W T + L+ HS + + FSP LA+ S+D T+
Sbjct: 758 FSPDGKQLVSGSYDDTVKIWDPATGELLQTLDGHSGTVESLAFSPDGKLLASGSYDNTID 817
Query: 701 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 760
+WD+ G L+TF GH S+ S+ F P+ +L + D D I+ W + G +
Sbjct: 818 LWDSAT-GELLQTFEGHPHSIWSVAFAPDGKELASASD-DSTIKIWDLATGELQQTLDSH 875
Query: 761 TAQMR---FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 816
+ +R F P G+ LA+++ ++ + + + T + SL+G + + SV + P G+ LA
Sbjct: 876 SQSVRSVAFSPD-GKLLASSSLDSTIKVWNPATGELQQSLEGRSGWVKSVAFSPDGKKLA 934
Query: 817 SVSE-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 875
S SE ++V++W +G E + L + S F P L +++LWN +
Sbjct: 935 SGSEKNTVKLWNPATG---ELLQTLEGHSQSVRSVAFSPDGKQLASSSSDTTIKLWNSTT 991
Query: 876 NKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912
+ T H+ I A+A S + ++ S S D +KLW
Sbjct: 992 GELQQTFKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLW 1029
|
|
| UNIPROTKB|Q8N136 WDR69 "Outer row dynein assembly protein 16 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 294 (108.6 bits), Expect = 8.6e-24, P = 8.6e-24
Identities = 74/241 (30%), Positives = 114/241 (47%)
Query: 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 686
++ R T++++C F+ L+ATG D A LW + L HS+ I + F+ S
Sbjct: 171 HTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTS 230
Query: 687 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRY 745
R+ T SFD TV VWDAD G + +GH A + S F N D LI + D +
Sbjct: 231 GDRIITGSFDHTVVVWDADT-GRKVNILIGHCAEISSASF--NWDCSLILTGSMDKTCKL 287
Query: 746 WSINNGSCTRVFKGGTAQMRFQ--PHLGRYLA-AAAENVVSILDAETQACRLSLQGHTKP 802
W NG C G ++ + G+ +A A+A+ I A T+ C L+GH
Sbjct: 288 WDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGE 347
Query: 803 IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 861
I + ++P G LL S+ + R+W G+C+ L + ++ SC F+ Y +V
Sbjct: 348 ISKISFNPQGNHLLTGSSDKTARIW---DAQTGQCLQVLEGHTDEIFSCAFN--YKGNIV 402
Query: 862 I 862
I
Sbjct: 403 I 403
|
|
| UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 281 (104.0 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 77/293 (26%), Positives = 143/293 (48%)
Query: 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 692
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 693 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 752
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 105 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 753 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 808
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 809 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF---HPTYPSLLVIGC 864
P+G+ +LA+ ++++++W S+G+C+ +C+ N+ + C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTCHKNEKY-CIFANFSVTGGKWIVSGS 278
Query: 865 YQSLE-LWNMSENKTMT-LTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 913
+L +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 279 EDNLVYIWNLQTKEVVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
|
| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 278 (102.9 bits), Expect = 2.8e-23, P = 2.8e-23
Identities = 76/286 (26%), Positives = 139/286 (48%)
Query: 641 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 700
FS DGK LA+ DK +W K + LE H I+D+ +S + ++S DKT++
Sbjct: 54 FSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASDDKTIK 113
Query: 701 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 760
+WD ++ G ++T GH V + F+P + +LI S D +R W +N G CT++
Sbjct: 114 IWDVES-GKMVKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGECTKMISAH 171
Query: 761 TAQMRFQPHLGR----YLAAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGE-L 814
+ + H R ++ + + V I D T Q K + V + P+G+ +
Sbjct: 172 SDPVT-GVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGKFV 230
Query: 815 LASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP---TYPSLLVIGCYQSL-EL 870
LA ++++R+W+ + + C+ + + N+ + C+F T +V G +L +
Sbjct: 231 LAGTLDNTLRLWSYNNNKK--CLKTYTGHKNEKY-CIFSTFSVTCGKWIVTGSEDNLIYI 287
Query: 871 WNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 913
+N+ + + TL HE ++ +A +AS + D+ VK+WK
Sbjct: 288 YNLQTREIVQTLAGHEDVVLTVACHPTENIIASGALEKDRSVKIWK 333
|
|
| UNIPROTKB|Q0P593 WDR69 "Outer row dynein assembly protein 16 homolog" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 287 (106.1 bits), Expect = 7.6e-23, P = 7.6e-23
Identities = 71/232 (30%), Positives = 112/232 (48%)
Query: 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 686
++ R T++++C F+ L+ATG D A LW + + L HS+ I + F+ S
Sbjct: 171 HTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTS 230
Query: 687 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRY 745
R+ T SFD TV VW+AD G + T +GH A + S F N D LI + D +
Sbjct: 231 GNRIITGSFDHTVTVWEADT-GRKVYTLIGHCAEISSAVF--NWDCSLILTGSMDKTCKL 287
Query: 746 WSINNGSCTRVFKGGTAQMRFQ--PHLGRYLA-AAAENVVSILDAETQACRLSLQGHTKP 802
W NG C G ++ + G+ +A A+A+ I A T+ C L+GH
Sbjct: 288 WDAVNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGE 347
Query: 803 IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 853
I + ++P G LL S+ + R+W G+C+ L + ++ SC F+
Sbjct: 348 ISKISFNPQGNRLLTGSSDKTARIW---DAQTGQCLQVLEGHTDEIFSCAFN 396
|
|
| UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 70/254 (27%), Positives = 125/254 (49%)
Query: 668 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 727
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 70
Query: 728 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 784
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 71 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 785 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 843
D +T C +L H+ P+ +V ++ G L+ S S D + R+W SG +C+ L +
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDD 186
Query: 844 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAALAVSTETG-- 898
N S V F P +L +L+LW+ S+ K + T T H+ A + TG
Sbjct: 187 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 246
Query: 899 YVASASHDKFVKLW 912
++ S S D V +W
Sbjct: 247 WIVSGSEDNLVYIW 260
|
|
| UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 70/254 (27%), Positives = 125/254 (49%)
Query: 668 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 727
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 96
Query: 728 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 784
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 97 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 785 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 843
D +T C +L H+ P+ +V ++ G L+ S S D + R+W SG +C+ L +
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDD 212
Query: 844 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAALAVSTETG-- 898
N S V F P +L +L+LW+ S+ K + T T H+ A + TG
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 272
Query: 899 YVASASHDKFVKLW 912
++ S S D V +W
Sbjct: 273 WIVSGSEDNLVYIW 286
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FUY2 | LEUNG_ARATH | No assigned EC number | 0.7440 | 0.8017 | 0.7862 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 913 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-64 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-47 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-40 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-32 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-30 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-28 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-27 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 1e-16 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-15 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 9e-15 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 2e-14 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 4e-14 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 8e-14 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 1e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-13 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 3e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 6e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-12 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 3e-12 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 4e-12 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 5e-12 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 6e-12 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 9e-12 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 9e-12 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 2e-11 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 4e-11 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 5e-11 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 5e-11 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 7e-11 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 8e-11 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 9e-11 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 4e-10 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 4e-10 | |
| PRK12757 | 256 | PRK12757, PRK12757, cell division protein FtsN; Pr | 4e-10 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 2e-09 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 2e-09 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-09 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-08 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 1e-08 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 1e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 2e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-08 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 3e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-08 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 4e-08 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 5e-08 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 5e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 6e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 6e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 7e-08 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 7e-08 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 8e-08 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 9e-08 | |
| PRK12757 | 256 | PRK12757, PRK12757, cell division protein FtsN; Pr | 1e-07 | |
| PRK12757 | 256 | PRK12757, PRK12757, cell division protein FtsN; Pr | 1e-07 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 1e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-07 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 1e-07 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 1e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-07 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 2e-07 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 3e-07 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 4e-07 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 4e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 4e-07 | |
| TIGR04211 | 198 | TIGR04211, SH3_and_anchor, SH3 domain protein | 4e-07 | |
| smart00818 | 165 | smart00818, Amelogenin, Amelogenins, cell adhesion | 4e-07 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 4e-07 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 5e-07 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 5e-07 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 5e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 5e-07 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 5e-07 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 6e-07 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 7e-07 | |
| COG3264 | 835 | COG3264, COG3264, Small-conductance mechanosensiti | 7e-07 | |
| PRK14474 | 250 | PRK14474, PRK14474, F0F1 ATP synthase subunit B; P | 7e-07 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 8e-07 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 9e-07 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 1e-06 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 1e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-06 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 1e-06 | |
| pfam03280 | 189 | pfam03280, Lipase_chap, Proteobacterial lipase cha | 1e-06 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 2e-06 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 3e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 4e-06 | |
| COG1570 | 440 | COG1570, XseA, Exonuclease VII, large subunit [DNA | 4e-06 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 5e-06 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 5e-06 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 5e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 6e-06 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 6e-06 | |
| COG1570 | 440 | COG1570, XseA, Exonuclease VII, large subunit [DNA | 7e-06 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 7e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 8e-06 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 8e-06 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 8e-06 | |
| pfam14282 | 106 | pfam14282, FlxA, FlxA-like protein | 8e-06 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 9e-06 | |
| cd00261 | 110 | cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors | 1e-05 | |
| pfam13904 | 261 | pfam13904, DUF4207, Domain of unknown function (DU | 1e-05 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 1e-05 | |
| pfam12118 | 261 | pfam12118, SprA-related, SprA-related family | 1e-05 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 2e-05 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 2e-05 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 2e-05 | |
| smart00818 | 165 | smart00818, Amelogenin, Amelogenins, cell adhesion | 2e-05 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 2e-05 | |
| pfam08513 | 27 | pfam08513, LisH, LisH | 2e-05 | |
| COG3115 | 324 | COG3115, ZipA, Cell division protein [Cell divisio | 2e-05 | |
| COG2959 | 391 | COG2959, HemX, Uncharacterized enzyme of heme bios | 2e-05 | |
| COG2959 | 391 | COG2959, HemX, Uncharacterized enzyme of heme bios | 2e-05 | |
| pfam02050 | 122 | pfam02050, FliJ, Flagellar FliJ protein | 2e-05 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 3e-05 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 3e-05 | |
| PRK14474 | 250 | PRK14474, PRK14474, F0F1 ATP synthase subunit B; P | 3e-05 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 3e-05 | |
| COG3115 | 324 | COG3115, ZipA, Cell division protein [Cell divisio | 3e-05 | |
| pfam02050 | 122 | pfam02050, FliJ, Flagellar FliJ protein | 3e-05 | |
| PRK11448 | 1123 | PRK11448, hsdR, type I restriction enzyme EcoKI su | 3e-05 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 4e-05 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 4e-05 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 5e-05 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 5e-05 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 6e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-05 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 6e-05 | |
| PRK04239 | 110 | PRK04239, PRK04239, hypothetical protein; Provisio | 6e-05 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 6e-05 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 7e-05 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 7e-05 | |
| PRK04239 | 110 | PRK04239, PRK04239, hypothetical protein; Provisio | 7e-05 | |
| PLN03029 | 222 | PLN03029, PLN03029, type-a response regulator prot | 7e-05 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 7e-05 | |
| PRK01741 | 332 | PRK01741, PRK01741, cell division protein ZipA; Pr | 7e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-05 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 8e-05 | |
| PRK11448 | 1123 | PRK11448, hsdR, type I restriction enzyme EcoKI su | 8e-05 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 8e-05 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 1e-04 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 1e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-04 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 1e-04 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 1e-04 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 1e-04 | |
| pfam12203 | 92 | pfam12203, HDAC4_Gln, Glutamine rich N terminal do | 1e-04 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 1e-04 | |
| pfam03938 | 157 | pfam03938, OmpH, Outer membrane protein (OmpH-like | 1e-04 | |
| pfam05914 | 379 | pfam05914, RIB43A, RIB43A | 1e-04 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 1e-04 | |
| pfam10595 | 349 | pfam10595, UPF0564, Uncharacterized protein family | 1e-04 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 1e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 2e-04 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 2e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-04 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 2e-04 | |
| PLN03029 | 222 | PLN03029, PLN03029, type-a response regulator prot | 2e-04 | |
| PRK01741 | 332 | PRK01741, PRK01741, cell division protein ZipA; Pr | 2e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 2e-04 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 3e-04 | |
| PRK14474 | 250 | PRK14474, PRK14474, F0F1 ATP synthase subunit B; P | 3e-04 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 3e-04 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 3e-04 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 3e-04 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 3e-04 | |
| pfam03938 | 157 | pfam03938, OmpH, Outer membrane protein (OmpH-like | 3e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 3e-04 | |
| PRK06800 | 228 | PRK06800, fliH, flagellar assembly protein H; Vali | 3e-04 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 4e-04 | |
| COG1570 | 440 | COG1570, XseA, Exonuclease VII, large subunit [DNA | 4e-04 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 4e-04 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 4e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 4e-04 | |
| PRK10863 | 216 | PRK10863, PRK10863, anti-RNA polymerase sigma fact | 4e-04 | |
| TIGR02223 | 298 | TIGR02223, ftsN, cell division protein FtsN | 4e-04 | |
| COG1322 | 448 | COG1322, COG1322, Predicted nuclease of restrictio | 4e-04 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 5e-04 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 5e-04 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 5e-04 | |
| PRK11448 | 1123 | PRK11448, hsdR, type I restriction enzyme EcoKI su | 5e-04 | |
| PRK06800 | 228 | PRK06800, fliH, flagellar assembly protein H; Vali | 5e-04 | |
| PRK10350 | 145 | PRK10350, PRK10350, hypothetical protein; Provisio | 5e-04 | |
| pfam04684 | 508 | pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorga | 5e-04 | |
| pfam09831 | 177 | pfam09831, DUF2058, Uncharacterized protein conser | 5e-04 | |
| pfam07321 | 152 | pfam07321, YscO, Type III secretion protein YscO | 5e-04 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 6e-04 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 7e-04 | |
| PLN03029 | 222 | PLN03029, PLN03029, type-a response regulator prot | 7e-04 | |
| pfam10956 | 104 | pfam10956, DUF2756, Protein of unknown function (D | 7e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 8e-04 | |
| smart00935 | 140 | smart00935, OmpH, Outer membrane protein (OmpH-lik | 8e-04 | |
| PRK11637 | 428 | PRK11637, PRK11637, AmiB activator; Provisional | 8e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 8e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 9e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 9e-04 | |
| COG0845 | 372 | COG0845, AcrA, Membrane-fusion protein [Cell envel | 9e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.001 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 0.001 | |
| cd00261 | 110 | cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors | 0.001 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.001 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 0.001 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 0.001 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 0.001 | |
| PRK01741 | 332 | PRK01741, PRK01741, cell division protein ZipA; Pr | 0.001 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.001 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.001 | |
| pfam10956 | 104 | pfam10956, DUF2756, Protein of unknown function (D | 0.001 | |
| smart00935 | 140 | smart00935, OmpH, Outer membrane protein (OmpH-lik | 0.001 | |
| TIGR00237 | 432 | TIGR00237, xseA, exodeoxyribonuclease VII, large s | 0.001 | |
| pfam11932 | 250 | pfam11932, DUF3450, Protein of unknown function (D | 0.001 | |
| COG5028 | 861 | COG5028, COG5028, Vesicle coat complex COPII, subu | 0.001 | |
| PRK05687 | 246 | PRK05687, fliH, flagellar assembly protein H; Vali | 0.001 | |
| COG5624 | 505 | COG5624, TAF61, Transcription initiation factor TF | 0.001 | |
| cd12191 | 90 | cd12191, gal11_coact, gall11 coactivator domain | 0.001 | |
| cd10149 | 90 | cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich | 0.001 | |
| pfam07271 | 279 | pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | 0.001 | |
| PRK05733 | 172 | PRK05733, PRK05733, single-stranded DNA-binding pr | 0.001 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 0.001 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.002 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 0.002 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.002 | |
| COG2959 | 391 | COG2959, HemX, Uncharacterized enzyme of heme bios | 0.002 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.002 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 0.002 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.002 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.002 | |
| TIGR00237 | 432 | TIGR00237, xseA, exodeoxyribonuclease VII, large s | 0.002 | |
| TIGR00237 | 432 | TIGR00237, xseA, exodeoxyribonuclease VII, large s | 0.002 | |
| PRK05733 | 172 | PRK05733, PRK05733, single-stranded DNA-binding pr | 0.002 | |
| pfam01984 | 105 | pfam01984, dsDNA_bind, Double-stranded DNA-binding | 0.002 | |
| pfam01984 | 105 | pfam01984, dsDNA_bind, Double-stranded DNA-binding | 0.002 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 0.002 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 0.002 | |
| PRK00191 | 84 | PRK00191, tatA, twin arginine translocase protein | 0.002 | |
| pfam11068 | 131 | pfam11068, DUF2869, Protein of unknown function (D | 0.002 | |
| pfam11180 | 192 | pfam11180, DUF2968, Protein of unknown function (D | 0.002 | |
| cd10163 | 90 | cd10163, ClassIIa_HDAC9_Gln-rich-N, Glutamine-rich | 0.002 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.003 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 0.003 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.003 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.003 | |
| pfam03938 | 157 | pfam03938, OmpH, Outer membrane protein (OmpH-like | 0.003 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 0.003 | |
| PRK10350 | 145 | PRK10350, PRK10350, hypothetical protein; Provisio | 0.003 | |
| cd10149 | 90 | cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich | 0.003 | |
| PRK00191 | 84 | PRK00191, tatA, twin arginine translocase protein | 0.003 | |
| pfam14362 | 297 | pfam14362, DUF4407, Domain of unknown function (DU | 0.003 | |
| PRK01294 | 336 | PRK01294, PRK01294, lipase chaperone; Provisional | 0.003 | |
| TIGR02302 | 851 | TIGR02302, aProt_lowcomp, TIGR02302 family protein | 0.003 | |
| pfam06625 | 122 | pfam06625, DUF1151, Protein of unknown function (D | 0.003 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.004 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.004 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.004 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 0.004 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.004 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.004 | |
| COG1322 | 448 | COG1322, COG1322, Predicted nuclease of restrictio | 0.004 | |
| PRK00191 | 84 | PRK00191, tatA, twin arginine translocase protein | 0.004 | |
| pfam02948 | 174 | pfam02948, Amelogenin, Amelogenin | 0.004 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.004 | |
| pfam12795 | 239 | pfam12795, MscS_porin, Mechanosensitive ion channe | 0.004 | |
| TIGR03789 | 239 | TIGR03789, pdsO, proteobacterial sortase system Om | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 4e-64
Identities = 89/293 (30%), Positives = 147/293 (50%), Gaps = 16/293 (5%)
Query: 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 688
++ T V C FS DGKLLATG D +W +T + L+ H+ + DV S
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 689 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 748
LA+ S DKT+R+WD + G +RT GH++ V S+ F P+ ++ S D I+ W +
Sbjct: 65 YLASGSSDKTIRLWDLET-GECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDV 122
Query: 749 NNGSCTRVFKGGTAQ---MRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPID 804
G C +G T + F P G ++A++ + + + D T C +L GHT ++
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181
Query: 805 SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 863
SV + P GE L S S D ++++W + S G+C+ L + N +S F P L+
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPD--GYLLAS 236
Query: 864 CY--QSLELWNM-SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913
++ +W++ + TL+ H + +LA S + +AS S D +++W
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 1e-47
Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 8/210 (3%)
Query: 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 681
+ + ++ TS V FS DG++L++ DK +W +T K T L H+ + V
Sbjct: 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141
Query: 682 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 741
FSP +A+SS D T+++WD G + T GH+ V S+ F P+ + L S DG
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGEKL-LSSSSDG 199
Query: 742 EIRYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQ 797
I+ W ++ G C +G + F P G LA+ +E + + D T C +L
Sbjct: 200 TIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGSEDGTIRVWDLRTGECVQTLS 258
Query: 798 GHTKPIDSVCWDPSGELLASVSED-SVRVW 826
GHT + S+ W P G+ LAS S D ++R+W
Sbjct: 259 GHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 156 bits (393), Expect = 1e-40
Identities = 89/300 (29%), Positives = 136/300 (45%), Gaps = 18/300 (6%)
Query: 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRF-SP 685
+R + FS DG+LL +G D LW D K+ H S ++ + SP
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120
Query: 686 SMPRLAT--SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 743
+ SS D TV++WD PG +RT GHS SV SL F P+ L DG I
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180
Query: 744 RYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAE-NVVSILDAET-QACRLSLQG 798
+ W + G G T + F P G +A+ + + + D T + R +L G
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240
Query: 799 HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 857
H+ + S + P G LLAS S D ++R+W + S S + LS + + S F P
Sbjct: 241 HSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSS--SLLRTLSGHSSSVLSVAFSPDGK 297
Query: 858 SLLVIGCYQSLELWNMSENK---TMTLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 913
L ++ LW++ K ++TL HEG +++L+ S + + S S D ++LW
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 2e-32
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 11/209 (5%)
Query: 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR---F 766
RT GH+ V + F P+ L+ + GDG I+ W + G R KG T +R
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 767 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV 825
+ +++ + + D ET C +L GHT + SV + P G +L+S S D +++V
Sbjct: 60 SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 826 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM-TLTA 883
W V G+C+ L + + +S F P + + +++LW++ K + TLT
Sbjct: 120 WDV---ETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTG 175
Query: 884 HEGLIAALAVSTETGYVASASHDKFVKLW 912
H G + ++A S + + S+S D +KLW
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-30
Identities = 68/210 (32%), Positives = 97/210 (46%), Gaps = 5/210 (2%)
Query: 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITD 680
+ K S + S + FS DG LLA+G D LW + S L HSS +
Sbjct: 230 TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289
Query: 681 VRFSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDG 739
V FSP LA+ S D TVR+WD + S T GH V SL F P+ L+
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
Query: 740 DGEIRYWSINNGSCTRVFKGGTA--QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 797
DG IR W + G + +G + + F P + + + V + D T + +L
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409
Query: 798 GHTKPIDSVCWDPSGELLASVSED-SVRVW 826
GHT + S+ + P G+ LAS S D ++R+W
Sbjct: 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 118 bits (295), Expect = 6e-28
Identities = 78/314 (24%), Positives = 136/314 (43%), Gaps = 26/314 (8%)
Query: 621 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-------LKSKTNLEE 673
S + + K + LL+ G + +L + S L
Sbjct: 4 NSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRG 63
Query: 674 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDF-HPNKD 731
H IT + FSP L + S D T+++WD DN +++ G H +SV L P+ +
Sbjct: 64 HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN 123
Query: 732 DLICSC-DGDGEIRYWSINN-GSCTRVFKGGTA---QMRFQPHLGRYLAAAAE--NVVSI 784
++ + DG ++ W ++ G R +G + + F P G+ LA+ + + +
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKL 182
Query: 785 LDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVH-ELS 841
D T +L GHT P+ S+ + P G L+AS S D ++R+W + S G+ + LS
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL---STGKLLRSTLS 239
Query: 842 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--TMTLTAHEGLIAALAVSTETGY 899
+ + S F P L ++ LW++ + TL+ H + ++A S +
Sbjct: 240 GHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL 298
Query: 900 VASASHDKFVKLWK 913
+AS S D V+LW
Sbjct: 299 LASGSSDGTVRLWD 312
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (287), Expect = 6e-27
Identities = 78/287 (27%), Positives = 115/287 (40%), Gaps = 48/287 (16%)
Query: 632 STSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPR 689
T V FS DG L+A+G D LW T K + L HS + FSP
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSL 255
Query: 690 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 749
LA+ S D T+R+WD + LRT GHS+SV+S+ F P+ L S DG +R W +
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA-SGSSDGTVRLWDLE 314
Query: 750 NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 809
G L+L+GH P+ S+ +
Sbjct: 315 TGKLLSS-------------------------------------LTLKGHEGPVSSLSFS 337
Query: 810 PSGELLA-SVSEDS-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 867
P G LL S+D +R+W + G+ + L + S F P + +
Sbjct: 338 PDGSLLVSGGSDDGTIRLWDL---RTGKPLKTLEG-HSNVLSVSFSPDGRVVSSGSTDGT 393
Query: 868 LELWNMSENK-TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913
+ LW++S L H + +L S + +AS S D ++LW
Sbjct: 394 VRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440
|
Length = 466 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 1e-16
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 89 QQQQQQQQQQQQ---------QQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
Q Q Q + QQ ++QQ S + Q+Q Q+ + Q QQ + Q
Sbjct: 577 QGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGEQQGQQGQGGQGQGQP 636
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQ--QPQQQQQRRDGAHLLNG 180
Q QQ Q QQQ QQ Q Q +QQ R + G
Sbjct: 637 GQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGG 679
|
Length = 820 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 8e-15
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 681
+ K ++R + V FS DG LLA+G D +W T + L H++ +T +
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267
Query: 682 RFSPSMPRLATSSFDKTVRVWD 703
+SP RLA+ S D T+R+WD
Sbjct: 268 AWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 9e-15
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+ Q+Q Q+ +QQ QQ Q Q Q QQ QQ Q Q QQ QQ Q
Sbjct: 609 RDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQ------------QQGQQGQGGQ 656
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQR 171
Q ++ QQ + + +Q+
Sbjct: 657 GGQGSLAER--QQALRDELGRQRGG 679
|
Length = 820 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-14
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ--QQQQQLQMQQILLQRHAQQQQQHQQ 144
+EQ Q+ +QQ QQ Q Q Q P QQ QQ Q QQ QQ Q Q A++QQ +
Sbjct: 612 QEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRD 671
Query: 145 QHQQQQQQQQQPPQQPQQQQPQ 166
+ +Q+ + +
Sbjct: 672 ELGRQRGGLPGMGGEAGEAARD 693
|
Length = 820 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 4e-14
Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 22/106 (20%)
Query: 86 AREQQQQQQQQ----QQQQQQQQQQSQQPPHQQQQQQ-----QQQQQ-------QLQMQQ 129
A++ +Q QQ Q Q Q QS+ QQ + ++QQ LQ Q
Sbjct: 559 AQQLLEQLQQMMENLQVTQGGQGGQSEM---QQAMEGLGETLREQQGLSDETFRDLQEQF 615
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+QQ Q Q Q Q Q Q QQ Q QQ QQ Q G
Sbjct: 616 ---NAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGG 658
|
Length = 820 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 8e-14
Identities = 30/104 (28%), Positives = 33/104 (31%), Gaps = 6/104 (5%)
Query: 79 IETQLIKAREQQQQQ---QQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRH 135
Q + A Q Q Q QQ QQ Q P QQ Q Q QQ +
Sbjct: 215 QPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274
Query: 136 A---QQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
Q Q Q Q PPQQPQ QQ Q +
Sbjct: 275 QPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGP 318
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-13
Identities = 32/137 (23%), Positives = 44/137 (32%), Gaps = 46/137 (33%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQ----------------------------- 114
++ +Q Q+ QQ Q Q S + Q
Sbjct: 509 MRQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQRMMDRIEELMESGRRAEAQQLLEQLQQ 568
Query: 115 -----QQQQQQQQQQLQMQQIL--LQRHAQQQQ----------QHQQQHQQQQQQQQQPP 157
Q Q Q Q +MQQ + L ++QQ Q Q Q+ +QQ QQ
Sbjct: 569 MMENLQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGEQQGQQGQ 628
Query: 158 QQPQQQQPQQQQQRRDG 174
Q QP QQ Q+ G
Sbjct: 629 GGQGQGQPGQQGQQGQG 645
|
Length = 820 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-13
Identities = 30/102 (29%), Positives = 36/102 (35%), Gaps = 1/102 (0%)
Query: 72 SEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQL-QMQQI 130
S+ A + + QQ Q QQ QPP QQQQ Q Q Q Q Q
Sbjct: 224 SQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPT 283
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q Q QQ Q Q QQ+ PQ ++Q
Sbjct: 284 PHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLV 325
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-13
Identities = 25/104 (24%), Positives = 28/104 (26%), Gaps = 12/104 (11%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ-- 147
Q Q Q QQPP QQ Q QQ+ QQQQ Q Q Q
Sbjct: 220 LPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP--QQQQQPPQPQAQPP 277
Query: 148 --------QQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTN 183
Q Q P P QQ ++
Sbjct: 278 PQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFR 321
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-13
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
EQQ QQ Q Q Q Q QQ QQ Q QQQ QQ Q Q L +R + + +Q
Sbjct: 619 RGEQQGQQGQGGQGQGQPGQQGQQG--QGQQQGQQGQGGQGGQGSLAERQQALRDELGRQ 676
Query: 146 HQQQQQQQQQPPQQPQQ 162
+ + +
Sbjct: 677 RGGLPGMGGEAGEAARD 693
|
Length = 820 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 3e-13
Identities = 28/83 (33%), Positives = 30/83 (36%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+ QQ +Q Q Q P Q Q QQ Q L QQ QQ
Sbjct: 187 RQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQP 246
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQ 169
Q QQ PP PQ Q QQQ
Sbjct: 247 QFPGLSQQMPPPPPQPPQQQQQP 269
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 3e-13
Identities = 23/88 (26%), Positives = 25/88 (28%), Gaps = 3/88 (3%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
+ Q +Q Q QQ Q QQ LQ Q Q
Sbjct: 204 PQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP 263
Query: 146 HQQQQ---QQQQQPPQQPQQQQPQQQQQ 170
QQQQ Q Q PPQ P Q
Sbjct: 264 QQQQQPPQPQAQPPPQNQPTPHPGLPQG 291
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 6e-13
Identities = 25/103 (24%), Positives = 32/103 (31%)
Query: 73 EVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILL 132
++ +E QL + ++ Q Q QQ Q Q QQ +Q Q
Sbjct: 153 MLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPE 212
Query: 133 QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
Q QQ Q Q Q PQQP Q Q
Sbjct: 213 QVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQM 255
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 3e-12
Identities = 22/85 (25%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
Q QQ +Q Q Q +Q Q QQ Q Q Q Q
Sbjct: 187 RQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPA---QPPLPPQLPQQPPPL 243
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQRR 172
QQ Q Q P QQQ++
Sbjct: 244 QQPQFPGLSQQMPPPPPQPPQQQQQ 268
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 3e-12
Identities = 38/82 (46%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
Q Q QQQ Q QQ + Q QQQ Q QQQ QM Q AQ Q QQQ Q Q
Sbjct: 203 GGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQ 262
Query: 152 QQQQ---PPQQPQQQQPQQQQQ 170
QQ Q P QQQP QQQ
Sbjct: 263 PQQMQGGQMQVPMQQQPPQQQP 284
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 4e-12
Identities = 32/155 (20%), Positives = 46/155 (29%), Gaps = 49/155 (31%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ-------------- 133
QQ QQ Q QQQ QQ Q Q ++QQ + +L Q+ L
Sbjct: 636 PGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMGGEAGEAARDAL 695
Query: 134 -------RHAQQ---------------------QQQHQQQHQQQQQQQQQPPQQPQQQQP 165
A++ ++ + + QQQ Q QQQ
Sbjct: 696 GRAGRAMGGAEEALGQGDLAEAVDRQGRALEALREGARALGEAMAQQQGQQQGGQGQQQG 755
Query: 166 QQQQQRRD-------GAHLLNGNTNGLLGNDSLMR 193
+Q RD G G+ + G R
Sbjct: 756 RQGGNGRDPLGRPRGGQGPDGGDRVKVPGEIDYQR 790
|
Length = 820 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 5e-12
Identities = 40/85 (47%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
QQ QQ QQQ QQ QQ P Q QQ QQ Q Q QQ Q Q Q QQ
Sbjct: 752 VQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV 811
Query: 148 QQQQQQQQPPQ----QPQQQQPQQQ 168
Q Q QQP Q QPQ QQPQQ
Sbjct: 812 APQPQYQQPQQPVAPQPQYQQPQQP 836
|
Length = 1355 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 6e-12
Identities = 19/76 (25%), Positives = 43/76 (56%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+QQQQ+ ++ ++Q+++++ QQ QQ+Q +Q++ Q+++ L Q++Q +
Sbjct: 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAK 125
Query: 147 QQQQQQQQQPPQQPQQ 162
Q +Q+Q +
Sbjct: 126 QAALKQKQAEEAAAKA 141
|
Length = 387 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 9e-12
Identities = 25/88 (28%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ----QQQQQQLQMQQILLQRHAQQQQQHQQ 144
Q QQ Q QQ Q Q Q Q + Q QQ
Sbjct: 246 PQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLL 305
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
QQ Q QQ+ PQ +Q QQQR
Sbjct: 306 PLVQQPQGQQRGPQFREQLVQLSQQQRE 333
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 9e-12
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPP--HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
+++ Q QQQQQ Q QPP +Q Q Q Q Q
Sbjct: 252 SQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQP 311
Query: 144 QQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
Q Q+ Q ++Q Q QQQ+ Q+
Sbjct: 312 QGQQRGPQFREQLVQLSQQQREALSQEE 339
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 2e-11
Identities = 24/118 (20%), Positives = 61/118 (51%)
Query: 55 WWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQ 114
W S+ I + S + A ++ + + + Q QQ ++ +QQ++ ++ +
Sbjct: 31 WGSLDETIEASGGGGGGSVIDAVMVDPGAVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAE 90
Query: 115 QQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ + +Q +Q +++Q+ +R Q+QQ Q + ++Q Q +Q Q+ Q ++ +Q+++
Sbjct: 91 ELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKK 148
|
Length = 387 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 4e-11
Identities = 42/109 (38%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+ Q A +QQ QQ QQ Q Q QQ QQP Q Q QQ QQ Q + QQ
Sbjct: 754 QPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQ---YQQPQQP 810
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL---NGNTNGL 185
Q Q+QQ QQ PQ Q QQP Q + H L NG++ L
Sbjct: 811 VAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPL 859
|
Length = 1355 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 5e-11
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
+Q +QQQQQ+ ++ + Q+ +QQQ ++ QQ+Q Q+ L Q ++ +Q+ Q +
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAE 121
Query: 150 QQQQQQPPQQPQQQQPQQQQ 169
+ +Q +Q Q ++ +
Sbjct: 122 EAAKQAALKQKQAEEAAAKA 141
|
Length = 387 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 5e-11
Identities = 22/84 (26%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
+Q +QQQQQ+ +++++ Q+++++QQQ ++LQ +Q Q +Q ++ + Q+Q++
Sbjct: 62 EQYNRQQQQQKSAKRAEE---QRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKK 118
Query: 152 QQQQPPQQPQQQQPQQQQQRRDGA 175
Q ++ +Q +Q Q ++ A
Sbjct: 119 QAEEAAKQAALKQKQAEEAAAKAA 142
|
Length = 387 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 65.4 bits (158), Expect = 7e-11
Identities = 46/103 (44%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQ--QSQQPPHQQQQQQQQQQQQLQMQ---QILLQR 134
+ ++ EQQ+QQQ Q QQQQQQ Q QQ QQQQQ Q QQ QM Q Q
Sbjct: 338 QEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNGGGQFATQA 397
Query: 135 HAQQQQQHQQQH---QQQQQQQQQPPQQPQQQQPQQQQQRRDG 174
H Q QH Q+Q Q QQQ Q QQ Q Q QQ + G
Sbjct: 398 HQHAAYLQQMQHMRLQEQIQHQQQQAQHHQQAQQQHQQPAQHG 440
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 8e-11
Identities = 18/85 (21%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+Q +QQQQQ+ ++ ++ ++ QQQ ++ QQ+Q + ++ L++ +++ Q+Q +Q
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQER--LKQLEKERLAAQEQKKQ 119
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRD 173
++ +Q + +Q + +
Sbjct: 120 AEEAAKQAALKQKQAEEAAAKAAAA 144
|
Length = 387 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 9e-11
Identities = 55/219 (25%), Positives = 72/219 (32%), Gaps = 6/219 (2%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQ-QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHA 136
++ + Q QQQQ Q QQQ Q Q QQ QQQ Q Q Q QQ
Sbjct: 204 GGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQP 263
Query: 137 QQQQQHQQQHQQQQQQQQQPPQQPQ-QQQPQQQQQRRDGAHLLNGNTNGLLGND-SLMRQ 194
QQ Q Q Q QQQ QQ PQQ Q P Q QQ G G G + Q
Sbjct: 264 QQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQ 323
Query: 195 NPGTANAMATRMYEEKLKL---PVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAAAT 251
+++LK +R +Q+ G N +
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQM 383
Query: 252 GQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINP 290
+ G GG+ + Q S+P ++
Sbjct: 384 VALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQT 422
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 4e-10
Identities = 31/133 (23%), Positives = 43/133 (32%), Gaps = 45/133 (33%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ--MQQI-------------- 130
RE +Q +Q Q+ Q P Q + QQ LQ M +I
Sbjct: 502 REALDDYMRQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQRMMDRIEELMESGRRAEAQQ 561
Query: 131 LLQ---------RHAQQQQQHQQQHQQQ----------QQ----------QQQQPPQQPQ 161
LL+ + Q Q Q + QQ QQ Q+Q Q+ +
Sbjct: 562 LLEQLQQMMENLQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGE 621
Query: 162 QQQPQQQQQRRDG 174
QQ Q Q + G
Sbjct: 622 QQGQQGQGGQGQG 634
|
Length = 820 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 4e-10
Identities = 30/81 (37%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
QQ Q Q QQ Q Q Q Q QQ QQ Q Q Q
Sbjct: 152 QQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQ---QPPQMGQPGMPGGGGQG 208
Query: 150 QQQQQQPPQQPQQQQPQQQQQ 170
Q QQQ P QQQ PQ QQQ
Sbjct: 209 QMQQQGQPGGQQQQNPQMQQQ 229
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 4e-10
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
EQ+Q +Q Q +QQ Q + P+ +Q Q + QQ + Q Q
Sbjct: 83 EQRQLLEQMQADMRQQPTQLSEVPYNEQTPQVPRSTVQIQQQ---AQQQQPPATTAQPQP 139
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQ 170
+Q P QPQ P + Q
Sbjct: 140 VTPPRQTTAPVQPQTPAPVRTQP 162
|
Length = 256 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 2e-09
Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 16/102 (15%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQP------------PHQQQQQQQQQQQQLQ----MQQ 129
A + + Q Q + Q Q Q +Q+ Q Q Q QQ L +Q
Sbjct: 129 APKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQ 188
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ +Q Q +Q PQQ Q Q
Sbjct: 189 AAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQP 230
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (148), Expect = 2e-09
Identities = 36/90 (40%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
Y + Q A + Q QQ QQ Q Q QQ QQP Q Q QQ QQ A
Sbjct: 765 YQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV-----------AP 813
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
Q Q Q Q Q Q Q PQQP QPQ
Sbjct: 814 QPQYQQPQQPVAPQPQYQQPQQPVAPQPQD 843
|
Length = 1355 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQ 150
+ + Q Q + Q Q P Q+ ++ + QLQ +Q Q QQ Q +Q
Sbjct: 129 APKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQ 188
Query: 151 Q--QQQQPPQQPQQQQPQQQQQRRDGAH 176
QQ PP+QP Q
Sbjct: 189 AAFPQQGPPEQPPGYPQPPQGHPEQVQP 216
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.3 bits (142), Expect = 5e-09
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 693
S V+ FS DG+++++G D LW T NL+ H+S +T + FSP LA+
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430
Query: 694 SFDKTVRVWDADNPGYSL 711
S D T+R+WD S+
Sbjct: 431 SSDNTIRLWDLKTSLKSV 448
|
Length = 466 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ- 147
Q + Q Q Q Q+ S + Q QQ+QQ Q Q Q +L + +Q Q
Sbjct: 137 PQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGP 196
Query: 148 -QQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+Q QPPQ +Q QQ
Sbjct: 197 PEQPPGYPQPPQGHPEQVQPQQFLPAPSQ 225
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 58.1 bits (139), Expect = 1e-08
Identities = 36/94 (38%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ-M 127
++ ++ + + Q + ++QQ QQQQQ Q QQ Q Q Q LQ M
Sbjct: 348 QRQQQIMHQHQQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNGGGQFATQAHQHAAYLQQM 407
Query: 128 QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQ 161
Q + LQ Q QQQ Q HQQ QQQ QQP Q Q
Sbjct: 408 QHMRLQEQIQHQQQQAQHHQQAQQQHQQPAQHGQ 441
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A Q +Q QQ + Q Q + +P Q QQ Q Q +Q L Q Q
Sbjct: 97 ASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQP---VSPQVAPA 153
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q Q Q Q +P Q
Sbjct: 154 PQPVHSAPQPAQQAFQPAEPVAAPQ 178
|
Length = 333 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 57.4 bits (138), Expect = 2e-08
Identities = 26/69 (37%), Positives = 33/69 (47%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
+ QQ Q QQ + Q P QQ QQQ QQQ QQ Q AQQ Q +Q H
Sbjct: 197 HRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGH 256
Query: 147 QQQQQQQQQ 155
++ ++Q Q
Sbjct: 257 KRSREQGNQ 265
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-08
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 666 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703
K L+ H+ +T V FSP LA+ S D TVRVWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 17/90 (18%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A+ ++Q+++++QQQ ++ QQ Q +Q++ +Q ++++L Q+ ++ A++ +
Sbjct: 74 AKRAEEQRKKKEQQQAEELQQKQAA--EQERLKQLEKERLAAQEQ--KKQAEEAAKQAAL 129
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
Q+Q ++ + + + + +R A
Sbjct: 130 KQKQAEEAAAKAAAAAKAKAEAEAKRAAAA 159
|
Length = 387 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-08
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 664 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703
+ + L+ H+ +T V FSP LA+ S D T+++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 56.5 bits (135), Expect = 4e-08
Identities = 32/80 (40%), Positives = 41/80 (51%)
Query: 95 QQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
Q Q Q QQ + + QQQ+++MQ+I QR Q QHQQQ QQ+ QQQQ
Sbjct: 310 QSAPPPAMNPQHIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQ 369
Query: 155 QPPQQPQQQQPQQQQQRRDG 174
QQ QQ QQ + +G
Sbjct: 370 MLLQQQQQMHQLQQHHQMNG 389
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPP-HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
AR Q Q Q Q +Q QQPP Q Q + Q Q + + Q +Q Q
Sbjct: 84 ARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQ 143
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q Q P Q QQ Q
Sbjct: 144 QPVSPQVAPAPQPVHSAPQPAQQAFQ 169
|
Length = 333 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (133), Expect = 5e-08
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
EQ Q +QQ Q + ++Q P Q+QQ Q+Q+Q Q+ + QR AQQ + +Q Q
Sbjct: 123 EQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQ--QRLAQQSRTTEQSWQ 180
Query: 148 QQQQ--QQQQPPQQPQQQQPQQQQQ 170
QQ + Q QP+Q +P QQ
Sbjct: 181 QQTRTSQAAPVQAQPRQSKPASTQQ 205
|
Length = 319 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 6e-08
Identities = 21/58 (36%), Positives = 25/58 (43%)
Query: 115 QQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ QQ Q QQ +Q AQQ QQ QQ Q QQ P QQ +Q +R
Sbjct: 201 PKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKR 258
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 6e-08
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 94 QQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQ 153
+ + + QQ + Q P QQ Q QQ QQQ Q Q QQ
Sbjct: 195 HRHRHAPKPTQQPTVQNPAQQPTVQNPAQQP------------QQQPQQQPVQPAQQPTP 242
Query: 154 QQPPQQPQQQQPQQQQQRRDG 174
Q P QQP Q + ++ R G
Sbjct: 243 QNPAQQPPQTEQGHKRSREQG 263
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 7e-08
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+ + + QQ Q +QQP Q QQ QQQ QQQ Q
Sbjct: 195 HRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQP-------------QQQPVQPAQQPT 241
Query: 149 QQQQQQQPPQQPQQQQPQQQQ 169
Q QQPPQ Q + ++Q
Sbjct: 242 PQNPAQQPPQTEQGHKRSREQ 262
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 7e-08
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 16/217 (7%)
Query: 632 STSKVICC-HFSSDGKLLATGGHDKKAVLWHTDTLKSK--------TNLEEHSSLITDVR 682
++S ++C F DG+ AT G +KK ++ +++ L S L
Sbjct: 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICW 540
Query: 683 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICSCDGDG 741
S ++A+S+F+ V+VWD L T M H V S+D+ L+ S DG
Sbjct: 541 NSYIKSQVASSNFEGVVQVWDVARS--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG 598
Query: 742 EIRYWSINNGSC--TRVFKGGTAQMRFQPHLGRYLA-AAAENVVSILDAETQACRL-SLQ 797
++ WSIN G T K ++F GR LA +A++ V D L ++
Sbjct: 599 SVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658
Query: 798 GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG 834
GH+K + V + S L++S +++++++W + G
Sbjct: 659 GHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISG 695
|
Length = 793 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 8e-08
Identities = 23/79 (29%), Positives = 34/79 (43%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
+ QQ Q+Q+Q QQ +QQ+ Q +Q QQQ + Q + Q + QQ
Sbjct: 147 EQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQP 206
Query: 146 HQQQQQQQQQPPQQPQQQQ 164
+Q Q Q + QQ
Sbjct: 207 YQDLLQTPAHTTAQSKPQQ 225
|
Length = 319 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 9e-08
Identities = 22/124 (17%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 50 GFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLI--KAREQQQQQQQQQQQQQQQQQQS 107
G L + + + I+ L+ A QQ + QQQ++ +++Q
Sbjct: 16 GLLI--LGSLY-----HSVKPEPGGGGEIIQAVLVDPGAVAQQANRIQQQKKPAAKKEQE 68
Query: 108 QQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
+Q +QQ ++ ++Q+ + + Q+ +Q+ ++ +Q +Q +Q ++ +Q + +
Sbjct: 69 RQKKLEQQAEEAEKQRAAEQAR---QKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAK 125
Query: 168 QQQR 171
+Q
Sbjct: 126 AKQA 129
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 24/89 (26%), Positives = 29/89 (32%), Gaps = 15/89 (16%)
Query: 88 EQQQQQQQQQQQQ-------QQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
EQ Q +QQ Q +Q Q + QQQ QQQQ Q Q
Sbjct: 89 EQMQADMRQQPTQLSEVPYNEQTPQVPRSTVQIQQQAQQQQPPATTAQ--------PQPV 140
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
+Q Q Q P + Q P Q
Sbjct: 141 TPPRQTTAPVQPQTPAPVRTQPAAPVTQA 169
|
Length = 256 |
| >gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
TQL + +Q Q + Q QQQ QQQQ Q + Q Q
Sbjct: 100 TQLSEVPYNEQTPQVPRSTVQIQQQA------QQQQPPATTAQPQPVTPPRQTTAPVQPQ 153
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
Q Q + P+ + ++++QR
Sbjct: 154 TPAPVRTQPAAPVTQAVEAPKVEAEKEKEQR 184
|
Length = 256 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 23/98 (23%), Positives = 32/98 (32%)
Query: 73 EVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILL 132
EV + A+E + + Q Q Q +Q QQ + Q Q +
Sbjct: 65 EVRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQP 124
Query: 133 QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
QQ +Q Q +Q QQ P P Q Q
Sbjct: 125 APQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQ 162
|
Length = 333 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-07
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 792 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 826
+L+GHT P+ SV + P G LLAS S+D +VRVW
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-07
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 789 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 826
+ +L+GHT P+ SV + P G+ LAS S+D ++++W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 18/85 (21%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
R QQQ++ +++Q++Q++ QQ ++Q+ +Q +Q +++Q + +Q +Q
Sbjct: 53 NRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAA--EKAAKQAEQA 110
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
+Q +++Q+Q + +Q + + +
Sbjct: 111 AKQAEEKQKQAEEAKAKQAAEAKAK 135
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 1e-07
Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ-QQQQQQLQMQQILLQRHAQQQQQHQ 143
+ R + +++ +Q++Q+ Q +++ Q ++ QQQQ+L Q LQR A +++
Sbjct: 273 QQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQR-ALERRLRL 331
Query: 144 QQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGN-----DSLMRQ 194
+ + ++ Q+ Q PQ++ + QQ+ L L ++L +Q
Sbjct: 332 AKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALAQQ 387
|
Length = 438 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 10/94 (10%), Positives = 59/94 (62%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
E A E+++++++++++++ + +Q +++++Q++ +++LQ ++ + + +
Sbjct: 49 EERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERI 108
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q++ + + Q+++++Q++ ++ + ++ +++
Sbjct: 109 QEEDEAEAQEKREKQKKLREEIDEFNEERIERKE 142
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 2e-07
Identities = 33/84 (39%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ--HQQQH 146
Q Q QQQQ Q Q P QQ Q QQ QQ Q Q QQ
Sbjct: 78 APQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQ 137
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQ 170
QQ Q Q PQQ Q Q P QQ Q
Sbjct: 138 AQQPQPPPQVPQQQQYQSPPQQPQ 161
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 3e-07
Identities = 23/67 (34%), Positives = 30/67 (44%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A + QQ Q QQ Q Q P QQ QQQ Q Q Q Q+ Q +Q H++
Sbjct: 200 APKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRS 259
Query: 146 HQQQQQQ 152
+Q Q+
Sbjct: 260 REQGNQE 266
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 4e-07
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 99 QQQQQQQQSQQPPHQQQQQ----QQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
QQ + Q Q + +QQ ++Q ++L+ +Q Q +Q ++ + + Q+QQ+Q +
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAE 121
Query: 155 QPPQQPQQQQPQQQQQRRDGA 175
+ +Q Q +Q QQ++Q R A
Sbjct: 122 EAEKQAQLEQKQQEEQARKAA 142
|
Length = 387 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 4e-07
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQ-QLQMQQILLQRHAQQQQ 140
+L +A ++ +Q++Q+ Q ++ + Q P QQQQ+ + Q ++Q+ L +R +Q
Sbjct: 275 RLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQ 334
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ ++ Q+ QQQ Q + QQ+ +Q +QR
Sbjct: 335 RLERLSQRLQQQNPQRRIERAQQRLEQLEQR 365
|
Length = 438 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 13/102 (12%), Positives = 57/102 (55%), Gaps = 9/102 (8%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQ---------QSQQPPHQQQQQQQQQQQQLQMQQI 130
E + K RE + + QQ++ + ++++ Q + ++Q+++++ +++ + +Q
Sbjct: 175 ERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQKQE 234
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
L + +Q ++ +++ Q+++ +++ ++ ++Q + ++ +
Sbjct: 235 LQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQ 276
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 14/107 (13%), Positives = 52/107 (48%)
Query: 67 TNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ 126
++ + ++ +L + +E+ + Q+Q + QQ+ Q+ +Q + + ++ Q++L
Sbjct: 59 SDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELA 118
Query: 127 MQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ L + +++++ ++ + +Q+ + + Q+ ++R
Sbjct: 119 RIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQRR 165
|
Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198 |
| >gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-07
Identities = 22/81 (27%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL-LQRHAQQQQQHQQQHQQQQ 150
QQ Q P Q QQ + Q H Q QQ Q Q
Sbjct: 44 QQHPPTHTLQPHHHIPVLPAQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQ 103
Query: 151 QQQQQPPQQPQQQQPQQQQQR 171
Q PQQP Q QP
Sbjct: 104 PLQPPQPQQPMQPQPPVHPIP 124
|
They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 4e-07
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 86 AREQQQ--QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
RE+ + ++Q QQQ + ++ Q + + + Q +QQQ + +Q +Q QQ
Sbjct: 635 NREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEA 694
Query: 144 QQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ ++Q Q+ Q+ + QQ Q ++++R
Sbjct: 695 KALNVEEQSVQETEQEERVQQVQPRRKQR 723
|
Length = 1068 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 5e-07
Identities = 21/101 (20%), Positives = 50/101 (49%), Gaps = 17/101 (16%)
Query: 79 IETQLIKAREQQQQQQQQQQQQ----QQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQR 134
I++Q A++ +QQ++++++Q + +Q Q+ Q ++++ + Q+
Sbjct: 67 IQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQE----------- 115
Query: 135 HAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
QQ+Q + + Q Q +Q+QQ Q + Q+++ A
Sbjct: 116 --QQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKA 154
|
Length = 387 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 53.0 bits (126), Expect = 5e-07
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+ + + Q + P H Q QQQ + +L QQ + + +QQ+Q Q HQ
Sbjct: 298 KSPMEAGGDRMPQSAPPPAMNPQHIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQQIMHQH 357
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
QQQQQQ+ QQ Q QQQ + H +NG
Sbjct: 358 QQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNG 389
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 17/81 (20%), Positives = 25/81 (30%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
Q + Q Q QQ Q P Q QQ Q Q + QQ +
Sbjct: 115 PQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPV 174
Query: 148 QQQQQQQQPPQQPQQQQPQQQ 168
Q + P +P+++
Sbjct: 175 AAPQPEPVAEPAPVMDKPKRK 195
|
Length = 333 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 5e-07
Identities = 12/89 (13%), Positives = 60/89 (67%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ +E+++ +++++Q+Q+ Q+ + +Q ++++ Q+++ ++ ++ +L++ A+ ++ Q+
Sbjct: 218 RQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQE 277
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++++ ++ + ++ +QQ +++++R
Sbjct: 278 NAEKRRMKRLEHRRELEQQIEEKEERRAA 306
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 5e-07
Identities = 30/84 (35%), Positives = 57/84 (67%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
++Q +++QQQQ+Q+++ Q + QQ+ QQ + + + QQ +R+ ++QQQ Q+Q+Q
Sbjct: 38 KEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQ 97
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQR 171
+ QQ+ QQ Q+P++QQ Q++ R
Sbjct: 98 ECQQRCQQQEQRPRRQQQCQRECR 121
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 52.7 bits (125), Expect = 6e-07
Identities = 32/81 (39%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 89 QQQQQQQQQQQQQQQQ-------QQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
QQQQQ Q QQ Q Q Q + QQ Q + Q+Q+Q QQ Q H Q QQQ
Sbjct: 373 QQQQQMHQLQQHHQMNGGGQFATQAHQHAAYLQQMQHMRLQEQIQHQQQQAQHHQQAQQQ 432
Query: 142 HQQQHQQQQQQQQQPPQQPQQ 162
HQQ Q Q P P
Sbjct: 433 HQQPAQHGQMGYGIPNGYPAH 453
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 7e-07
Identities = 31/88 (35%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ--QQQHQQ 144
REQQQ +++ ++Q +++QQQ +Q Q++ +Q QQ+ Q + + QQ ++++++
Sbjct: 28 REQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEK 87
Query: 145 QHQQQQQQQQQPPQ--QPQQQQPQQQQQ 170
+ QQQQ+Q Q+ Q Q Q+Q+P++QQQ
Sbjct: 88 EQQQQQRQYQECQQRCQQQEQRPRRQQQ 115
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 7e-07
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 25/119 (21%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQ----------------QQ 123
E L +E ++Q++ + ++ + Q QQ+ Q
Sbjct: 28 EAALQLLQEAVNSKRQEEAEPAAEEAELQAELIQQELAINDQLSQALNQQTERLNALASD 87
Query: 124 QLQMQQILLQ-----RHAQQQQQHQQ----QHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
Q+ +LLQ R ++Q + + QQ P+ Q Q+ + Q RD
Sbjct: 88 DRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLGPLPEAGQPQEQFEVTQERD 146
|
Length = 835 |
| >gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 7e-07
Identities = 18/86 (20%), Positives = 43/86 (50%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
Q++K R+Q+ + Q +Q+QQ+ + ++Q+QQ +QQ+ M Q Q+Q
Sbjct: 31 IQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQH 90
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQ 166
+ + + + +Q ++++ +
Sbjct: 91 LLNEAREDVATARDEWLEQLEREKQE 116
|
Length = 250 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 52.3 bits (124), Expect = 8e-07
Identities = 36/94 (38%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ---QQH 142
A Q Q QQQ + + Q Q+ Q+ +QQ+QQQ Q QQ Q H QQQ QQ
Sbjct: 316 AMNPQHIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQMLLQQQ 375
Query: 143 QQQHQQQQQQQQ----QPPQQPQQQQPQQQQQRR 172
QQ HQ QQ Q Q Q Q QQ +
Sbjct: 376 QQMHQLQQHHQMNGGGQFATQAHQHAAYLQQMQH 409
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-07
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ--QQQQQLQMQQILLQRHAQ--QQQQHQQQ 145
Q+ + + Q QPP+ Q +Q QQ + Q+ R AQ Q Q
Sbjct: 74 APANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPA 133
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQR 171
+Q Q +Q Q P PQ Q
Sbjct: 134 YQPQPEQPLQQPVSPQVAPAPQPVHS 159
|
Length = 333 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 1e-06
Identities = 32/116 (27%), Positives = 39/116 (33%), Gaps = 14/116 (12%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
+ + Q +K + + + QQQ QQQQQQQ P QQQ QQ Q QM
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQM 383
Query: 128 Q--QILLQRHAQQQQQHQQQHQ------------QQQQQQQQPPQQPQQQQPQQQQ 169
L + Q Q Q Q Q PQ PQ P
Sbjct: 384 VALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQPSVPSPGG 439
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 16/97 (16%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
I+ Q A +++Q++Q++ +QQ ++ ++ + +Q +Q++ +Q+ ++ Q
Sbjct: 55 IQQQKKPAAKKEQERQKKLEQQAEEAEKQRA---AEQARQKELEQRAAAEKAAKQAEQAA 111
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+Q ++Q Q ++ + +Q + + + + +++ ++ A
Sbjct: 112 KQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEA 148
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 11/93 (11%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 82 QLIKAREQQQQ--QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+L +ARE+Q + +++ Q+++ +++ + ++ +Q + ++ +Q+ + +++ H ++
Sbjct: 234 ELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRREL 293
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+Q ++ ++++ +++ + ++ +++ +R+
Sbjct: 294 EQQIEEKEERRAAEREEELEEGERLREEEAERQ 326
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 33/91 (36%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQ---------QQQLQMQQILLQRHAQQQQQ 141
Q QQQQ Q Q Q P QQ Q QQ Q Q Q+ QQ Q
Sbjct: 83 QPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQ 142
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q QQQQ Q P Q QQ P Q Q
Sbjct: 143 PPPQVPQQQQYQSPPQQPQYQQNPPPQAQSA 173
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|217472 pfam03280, Lipase_chap, Proteobacterial lipase chaperone protein | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 30/114 (26%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL----------------- 131
Q +Q+ ++ +Q P ++ ++ QQ Q
Sbjct: 72 QDPSLSDEQKARRLAALIAQLPEDLREARRNAALQQELAQATAQLQAQGASPQDLRAARA 131
Query: 132 ----------LQRHAQQQQQHQQQHQQQQQQQQQ---PPQQPQQQQPQQQQQRR 172
L + Q++ QQ++ ++ Q +Q Q Q R+
Sbjct: 132 ALVGPEAAQRLAQLDQERAAWQQRYDDYLAERDQILAAGLSDADKQAQIAQLRQ 185
|
Length = 189 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
TQL++ +Q +Q+QQ Q+Q+Q Q Q+ QQ + +Q QQ R +Q
Sbjct: 134 TQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQ---TRTSQAAP 190
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQ------QPQQQQ 169
Q Q + QQP Q Q Q + QQ
Sbjct: 191 VQAQPRQSKPASTQQPYQDLLQTPAHTTAQSKPQQ 225
|
Length = 319 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ---QQLQMQQILLQRHAQQQQQHQQ 144
E Q Q + Q Q QQP +Q Q +Q QQ Q+ + Q QQ Q
Sbjct: 110 EAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQ 169
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ Q +P +P + +++
Sbjct: 170 PAEPVAAPQPEPVAEPAPVMDKPKRK 195
|
Length = 333 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-06
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 747
G LRT GH+ V S+ F P+ +L+ S DG +R W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-06
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 707 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 747
G L+T GH+ V S+ F P+ + S DG I+ W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 11/94 (11%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
E + + R++++++ + Q+Q ++++ + +Q++ +++ Q++ QM +I+ + +
Sbjct: 57 EEEERERKRKEERREGRAVLQEQIEEREKR----RQEEYEERLQEREQMDEIIERIQEED 112
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ + Q++ ++Q++ +++ + +++ ++++++
Sbjct: 113 EAEAQEKREKQKKLREEIDEFNEERIERKEEEKE 146
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-06
Identities = 17/97 (17%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ-QILLQRHAQQQ 139
+ ++ Q++Q+ + ++ Q + ++ +QQQ+ + +L+ + L Q+
Sbjct: 278 HRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRLDELAIRLRRALENQLALKKQRL 337
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
++ Q+ Q Q+QQQ QQ +++ + +++
Sbjct: 338 ERLTQRLNPQIQRQQQRLQQLERRLDKALRRQLKRKR 374
|
Length = 440 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 14/69 (20%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ R++++QQQ ++ QQ+Q +Q + ++++ Q+Q++ + A+Q Q+
Sbjct: 79 EQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEA------AKQAALKQK 132
Query: 145 QHQQQQQQQ 153
Q ++ +
Sbjct: 133 QAEEAAAKA 141
|
Length = 387 |
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 19/96 (19%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQ----QQQLQMQQILLQRHAQ 137
+L K +E+ +Q + + + ++ + QQ+Q + + + +++ Q+Q Q +Q Q +
Sbjct: 55 ELSKMQEKTRQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDE 114
Query: 138 -QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
++++Q++ +QQ++Q ++ + ++ +Q+ RR
Sbjct: 115 LARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRR 150
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-06
Identities = 14/97 (14%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ-----QQQQQLQMQ-QILLQRH 135
+L++ +Q+ +Q QQ + + + +Q QQQ+ ++ ++ + + L++
Sbjct: 500 ELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQL 559
Query: 136 AQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
++ + + + + ++ +QQ Q Q + +
Sbjct: 560 QEELEARLESLSESVSEARERRMALRQQLEQLQARIQ 596
|
Length = 1486 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 6e-06
Identities = 14/103 (13%), Positives = 61/103 (59%)
Query: 71 HSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI 130
+ E A E + IKA E++++++ + ++++ + + +++++++++++ + Q
Sbjct: 19 NKERDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQE 78
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++ +++Q+ ++ Q+++Q + ++ Q++ + Q++R+
Sbjct: 79 QIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKRE 121
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 27/82 (32%), Positives = 30/82 (36%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
QQ QQ+ Q Q PP QQ Q QQ Q QQ Q QQ Q Q Q
Sbjct: 110 VPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQ 169
Query: 149 QQQQQQQPPQQPQQQQPQQQQQ 170
Q Q P++ Q Q
Sbjct: 170 AQSAPQVSGLYPEESPYQPQSY 191
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 7e-06
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 85 KAREQQQQQQQQQ-----------QQQQQQQQQSQQPPHQQQQQQ-QQQQQQLQMQQILL 132
A QQ Q Q+ Q++Q+ + +++ + ++ +QQQ+L I L
Sbjct: 263 SAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRLDELAIRL 322
Query: 133 QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+R + Q ++Q ++ Q+ P Q QQQ+ QQ ++R D A
Sbjct: 323 RRALENQLALKKQRLERLTQRLNPQIQRQQQRLQQLERRLDKA 365
|
Length = 440 |
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-06
Identities = 27/76 (35%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 95 QQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
QQ Q Q QQ P+QQQ QQ Q QQ H Q Q
Sbjct: 3 YQQNTNQYPPQNQQQQPYQQQPYHQQMPPP-----------PYSPPQQQQGHFMPPQPQP 51
Query: 155 QPPQQPQQQQPQQQQQ 170
P Q PQQQQP Q
Sbjct: 52 YPKQSPQQQQPPQFSS 67
|
The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 8e-06
Identities = 8/96 (8%), Positives = 56/96 (58%), Gaps = 6/96 (6%)
Query: 84 IKARE--QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+ ++ Q+ +++Q ++++++ Q++ + ++++ ++Q + +++Q ++ ++ +
Sbjct: 229 RRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLE 288
Query: 142 H----QQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
H +QQ +++++++ ++ ++ + +++ +
Sbjct: 289 HRRELEQQIEEKEERRAAEREEELEEGERLREEEAE 324
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 8e-06
Identities = 34/81 (41%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPP-HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
Q Q QQQQSQ PP HQ Q QQ Q QQ Q+ Q Q
Sbjct: 73 LPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPP 132
Query: 149 QQQQQQQPPQQPQQQQPQQQQ 169
QQ Q Q P QP Q PQQQQ
Sbjct: 133 AQQPQAQQP-QPPPQVPQQQQ 152
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 8e-06
Identities = 23/93 (24%), Positives = 56/93 (60%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+ + + + + +Q+ + Q++QQQ +++ ++ ++QQQQ+Q+++ Q + Q+ QQ
Sbjct: 10 QQRYEQCQRRCEQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQH 69
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ + QQ+ +++ +Q QQQ+ Q+ Q+R
Sbjct: 70 EPRHRPTCQQRCERRYEKEQQQQQRQYQECQQR 102
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|222647 pfam14282, FlxA, FlxA-like protein | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-06
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
Q+Q Q +Q ++ ++Q+QQQ QQQ+QM Q + + QQQQ ++ QQQ
Sbjct: 25 QKQIQSLTKQLKELSSSEDLTAEEKQKQQQLIQQQIQMLQAQIAQL--QQQQSEEAQQQQ 82
Query: 150 QQQQQQPPQQP 160
Q + P Q
Sbjct: 83 QSSIEDSPSQT 93
|
This family includes FlxA from E. coli. The expression of FlxA is regulated by the FliA sigma factor, a transcription factor specific for class 3 flagellar operons. However FlxA is not required for flagellar function or formation. Length = 106 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 9e-06
Identities = 15/79 (18%), Positives = 42/79 (53%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
K +E+Q ++ + +Q +Q++ Q + + Q+QQ+Q + +Q L++ Q++Q +
Sbjct: 82 KKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKA 141
Query: 145 QHQQQQQQQQQPPQQPQQQ 163
+Q+++ + + +
Sbjct: 142 AAEQKKKAEAAKAKAAAEA 160
|
Length = 387 |
| >gnl|CDD|238163 cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 19/98 (19%)
Query: 88 EQQQQQQQQQQQQQ---------QQQQQSQQPPHQQQQQQQQQQQQ--LQMQQILLQRHA 136
+QQ Q QQQ QQ QQ PP QQ + +QQ Q+ QI
Sbjct: 1 QQQCQPGQQQPQQPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQI------ 54
Query: 137 QQQQQHQ--QQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+Q + + +Q Q QQQQ Q+ QQ Q ++ ++
Sbjct: 55 PEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERMRQA 92
|
They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans. Length = 110 |
| >gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 18/128 (14%), Positives = 59/128 (46%), Gaps = 37/128 (28%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQ------------QQQQQQQQLQMQQILL 132
K ++Q++ Q+ +++Q+Q+++ ++ + +Q Q+ QQ + + +
Sbjct: 96 KQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKK 155
Query: 133 -------------------------QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
++ Q+ + + + QQQ++++++ Q+ +QQ+ ++
Sbjct: 156 EAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEE 215
Query: 168 QQQRRDGA 175
++Q+ + A
Sbjct: 216 RKQKAEEA 223
|
This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 26/122 (21%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQ-------------------------PPHQ 113
+ Q + Q Q QQQ + Q+ Q++Q Q
Sbjct: 722 VHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQ 781
Query: 114 QQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+Q +Q + Q Q Q L+ + AQ QHQQ + +Q QQ+ Q QQ R+
Sbjct: 782 LEQLKQNLENQRQQAQTLVTQTAQALAQHQQH-RPDGLDLTVTVEQIQQELAQLAQQLRE 840
Query: 174 GA 175
Sbjct: 841 NT 842
|
Length = 1047 |
| >gnl|CDD|221429 pfam12118, SprA-related, SprA-related family | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ 128
+ + AA +L K + ++ +++ ++ Q Q+QQ+QQQQ++ Q++
Sbjct: 55 KGQASTAAGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVR 114
Query: 129 QILLQRHAQQQQQHQQQHQ 147
+ L+ ++ + H+Q H
Sbjct: 115 E--LKARDREVRAHEQAHA 131
|
This protein is found in bacteria. Proteins in this family are typically between 234 to 465 amino acids in length. There is a conserved GEV sequence motif.Most members are annotated as being SprA-related. Length = 261 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 13/94 (13%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E Q +A EQ++ +Q ++++ Q+Q+ Q + +Q +Q+Q + A+ +
Sbjct: 91 ELQQKQAAEQERLKQLEKERLAAQEQKKQA--EEAAKQAALKQKQAEEAAAKAAAAAKAK 148
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ + + ++ + + + ++ +
Sbjct: 149 AEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAE 182
|
Length = 387 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 17/96 (17%), Positives = 44/96 (45%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E Q K +QQ ++ QQ+Q +Q++ + + Q+Q++Q ++ Q L Q+ A++
Sbjct: 78 EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEA 137
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+ + + + ++ + +++ A
Sbjct: 138 AAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEA 173
|
Length = 387 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 2e-05
Identities = 19/89 (21%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
QL + + Q ++ QQQQ+ + Q+ +++ + +Q+L+ LQ+ Q++
Sbjct: 293 QLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRI 352
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ Q Q+ +Q +Q+ + ++Q +++Q+
Sbjct: 353 ERAQ-QRLEQLEQRLRRAMRRQLKRKRQR 380
|
Length = 438 |
| >gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 25/78 (32%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQP-PHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
QQ QQ Q S P H Q Q QQ Q Q + Q Q QQ Q
Sbjct: 63 AQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQPL-------QPPQPQQPMQ 115
Query: 148 QQQQQQQQPPQQPQQQQP 165
Q PP PQ P
Sbjct: 116 PQPPVHPIPPLPPQPPLP 133
|
They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 21/141 (14%), Positives = 59/141 (41%), Gaps = 9/141 (6%)
Query: 29 AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKARE 88
QA+Q K++ + +A W V ++ ++H + +L + +
Sbjct: 476 EQAYQLVRKIAGEVSRSEA--------WDVARELLRRLREQRHLAEQLQQLRMRLSELEQ 527
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+ +QQQ+ ++ + ++ + + + +Q Q++ + L + ++ +++ QQ
Sbjct: 528 RLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQ 587
Query: 149 QQQQQQQPPQQPQQQQPQQQQ 169
+Q Q + Q+ + P
Sbjct: 588 LEQLQAR-IQRLAARAPAWLA 607
|
Length = 1486 |
| >gnl|CDD|149534 pfam08513, LisH, LisH | Back alignment and domain information |
|---|
Score = 41.9 bits (100), Expect = 2e-05
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 10 KMLDVYIHDYLVKRDLKASAQAFQAEG 36
+ L+ I+DYLVK K +A+AF E
Sbjct: 1 EELNRLIYDYLVKSGYKETAEAFAKES 27
|
The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27 |
| >gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 21/85 (24%), Positives = 28/85 (32%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
AR+ Q Q Q + Q + QPP Q Q + Q A+Q Q+
Sbjct: 82 ARQSPQHQYQPEYASAQIKIPVPQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLPQEA 141
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q P Q QP +Q
Sbjct: 142 PAPQPVHSAAPQPAVQTVQPAVPEQ 166
|
Length = 324 |
| >gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH-- 146
QQQ Q Q+ Q QQQ Q+ Q+ Q + L QQ ++Q + Q+
Sbjct: 55 QQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLS 114
Query: 147 QQQQQQQQQPPQQPQQ 162
+ Q++ +
Sbjct: 115 ELQKKVATISGSDRKD 130
|
Length = 391 |
| >gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
QQQ Q Q+ Q QQQ + Q+ Q+ Q L AQQQ + + +Q
Sbjct: 55 QQQNVLQTQELQALQQQLKALQLAQENQKLLAQ--------LESLIAQQQAELDRLERQL 106
Query: 150 QQQQQQPPQQPQQQQPQQQQQRRD 173
+ Q+Q + ++ R+D
Sbjct: 107 ETLQKQLSELQKKVATISGSDRKD 130
|
Length = 391 |
| >gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 19/94 (20%), Positives = 40/94 (42%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
KA + QQ+ +Q +++ ++ QQ + +QQ Q + ++ +
Sbjct: 2 KAARNLAEAQQELEQAEEKLEELQQYRLEYRQQLSGSGQGISAAELRNYQAFISALDEAI 61
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
QQQ+ +Q + + ++Q Q+ Q R L
Sbjct: 62 AQQQQELEQAEKQVEQAREQWQEANQERKKLEKL 95
|
Length = 122 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 3e-05
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 112 HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
H + QQ Q Q Q QQ QQ QQQ QP QQP Q P QQ +
Sbjct: 199 HAPKPTQQPTVQNPAQQP-------TVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQ 251
Query: 172 RDGAH 176
+ H
Sbjct: 252 TEQGH 256
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
QL + + QQ + +Q QQQ + SQ P Q Q +Q + Q Q LLQ A Q
Sbjct: 161 QLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTTAQ 220
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ QQ + P+ ++ ++R
Sbjct: 221 SK---PQQAAPVTRAADAPKPTAEKKDERR 247
|
Length = 319 |
| >gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 17/93 (18%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
++ +I+ +++QQ+ + Q +Q+QQ ++ +Q+QQ +Q Q + Q
Sbjct: 25 FLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQ-QRASFMAQAQEA 83
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+Q Q + ++ + +Q +++Q+
Sbjct: 84 ADEQRQHLLNEAREDVATARDEWLEQLEREKQE 116
|
Length = 250 |
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 106 QSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQP 165
Q Q Q QQQQ Q Q H Q QQQQ P QP +Q
Sbjct: 1 NPYQQNTNQYPPQNQQQQPYQQQPY----HQQMPPPPYSPPQQQQGHFMPPQPQPYPKQS 56
Query: 166 QQQQQ 170
QQQQ
Sbjct: 57 PQQQQ 61
|
The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110 |
| >gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
+ Q Q Q +QPP + +Q Q+ H+ Q Q
Sbjct: 104 PQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLPQEAPAPQPV-----HSAAPQPAVQT 158
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
Q +QQ P++ + P+ ++ R ++
Sbjct: 159 VQPAVPEQQVQPEEVVEPAPEVKRPPRKDTVII 191
|
Length = 324 |
| >gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ--QQQQQQLQMQQILLQRHA 136
L +A+++ +Q +++ ++ QQ + + +Q Q + + L + A
Sbjct: 3 AARNLAEAQQELEQAEEKLEELQQYRLEYRQQLSGSGQGISAAELRNYQAFISALDEAIA 62
Query: 137 QQQQQ-----HQQQHQQQQQQQQQ 155
QQQQ+ Q + ++Q Q+
Sbjct: 63 QQQQELEQAEKQVEQAREQWQEAN 86
|
Length = 122 |
| >gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 19/80 (23%), Positives = 39/80 (48%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQ 150
QQ+ +QQ + + Q Q + QQQ+L + L ++QQ+ + Q +Q Q
Sbjct: 145 HALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQ 204
Query: 151 QQQQQPPQQPQQQQPQQQQQ 170
++ + Q+ +Q++ + Q
Sbjct: 205 EKAAETSQERKQKRKEITDQ 224
|
Length = 1123 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 22/78 (28%), Positives = 28/78 (35%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQ 150
+Q + + QQ + P Q Q QQ Q Q ++ Q Q Q QQ
Sbjct: 54 EQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQ 113
Query: 151 QQQQQPPQQPQQQQPQQQ 168
QQ P P QPQ
Sbjct: 114 PTPQQEPYYPPPSQPQPP 131
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
+QQ Q Q Q Q+ Q+Q+ + L+ Q L + +QQ +Q +
Sbjct: 59 KQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDEL 118
Query: 150 QQQ 152
QQ+
Sbjct: 119 QQK 121
|
Length = 390 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 12/89 (13%), Positives = 46/89 (51%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+ K +Q ++ ++Q+ +Q +Q++ +Q ++ +Q +Q Q ++ Q + +Q
Sbjct: 69 RQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQ 128
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ + + + ++ ++ ++Q +++ +
Sbjct: 129 AAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 5e-05
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
+ + A + Q + + Q +QQQ ++++Q++ Q QQ+ + + Q
Sbjct: 644 RQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQS 703
Query: 128 QQILLQRHAQQQQQHQQQHQQQQQQQQ 154
Q +Q++ QQ Q +++Q+Q
Sbjct: 704 VQ------ETEQEERVQQVQPRRKQRQ 724
|
Length = 1068 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 6e-05
Identities = 15/72 (20%), Positives = 40/72 (55%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E + +A EQ++ +Q ++++ + Q+QQ Q ++Q Q +Q+QQ+ Q ++ ++ + +
Sbjct: 91 ELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAE 150
Query: 140 QQHQQQHQQQQQ 151
+ + +
Sbjct: 151 AAKAKAAAEAAK 162
|
Length = 387 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 6e-05
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 623 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 661
K +++ T V FS DG LLA+G D +W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 6e-05
Identities = 18/101 (17%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 82 QLIKAREQQ--------QQQQQQQQQQQQQQQQ---SQQPPHQQQQQQQQQQQQLQMQQI 130
+ ++ + Q+ + Q ++ QQQQ+ Q+ +++ + +Q+L+
Sbjct: 282 RRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLERLSQ 341
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
LQ+ Q++ + Q + +Q +Q+ ++ ++Q ++++QR
Sbjct: 342 RLQQQNPQRRIERAQQRLEQLEQRL--RRAMRRQLKRKRQR 380
|
Length = 438 |
| >gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 6e-05
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
R ++ ++ Q+Q Q+QQQ Q+ +Q++ Q Q + Q Q IL Q
Sbjct: 7 RRRKLEELQKQAQEQQQAQE--------EQEEAQAQAEAQKQAILRQ 45
|
Length = 110 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 6e-05
Identities = 15/91 (16%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 66 RTNEKHSEVAASYIETQLIKARE-QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQ 124
+ + E+ E +L + E ++Q++++ ++++++ ++++++ Q+Q++Q++ Q+Q
Sbjct: 52 QDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQ 111
Query: 125 LQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
+ + + A++ + +++H QQ +Q++
Sbjct: 112 KEEAEARAREEAERMRLEREKHFQQIEQERL 142
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 7e-05
Identities = 14/72 (19%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ-QQQQLQMQQILLQRHA 136
++ +L +A E++ + +Q+ ++ Q+ Q Q P + ++ QQ+ +Q + ++++ + ++
Sbjct: 316 RLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLK 375
Query: 137 QQQQQHQQQHQQ 148
+++Q+ + QQ
Sbjct: 376 RKRQRLEALAQQ 387
|
Length = 438 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 14/100 (14%), Positives = 66/100 (66%), Gaps = 9/100 (9%)
Query: 79 IETQLIKA-REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQR--- 134
+E Q KA RE++++ ++++++++++++ ++ + QQ++ + ++ ++ ++
Sbjct: 156 LEYQREKAEREEEREAERRERKEEKEREVAR----LRAQQEEAEDEREELDELRADLYQE 211
Query: 135 -HAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ ++++Q +++ +++++Q+Q Q+ +++Q +++++R
Sbjct: 212 EYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQ 251
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 7e-05
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 6/48 (12%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL 131
I+ R+ ++ Q+Q Q+QQQ Q++Q ++ Q Q + Q+Q ++QIL
Sbjct: 6 IRRRKLEELQKQAQEQQQAQEEQ------EEAQAQAEAQKQAILRQIL 47
|
Length = 110 |
| >gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 7e-05
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 111 PHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
PH + + + Q+Q+ Q +Q L+ Q ++ Q+Q QQ Q Q QP QQPQQ +++
Sbjct: 143 PHMMKTKSKNQKQENQEKQEKLEESEIQSEK-QEQPSQQPQSQPQPQQQPQQPNNNKRKA 201
Query: 171 RRDG 174
+G
Sbjct: 202 MEEG 205
|
Length = 222 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 7e-05
Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 23/113 (20%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ- 139
+ +K + QQ QQ Q++++Q+ ++QQ +Q + +++ + + Q
Sbjct: 225 EKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQE 284
Query: 140 ----------------------QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
QQ Q+ H + Q + + + ++ +QQ
Sbjct: 285 RINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQ 337
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 10/89 (11%), Positives = 22/89 (24%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
Y Q Q Q Q Q + + + + ++ L A
Sbjct: 112 YYMQNHRSEPIQPTQPQYQSPTQTNVASMTIEETQSPNVPIEGINSSSEQLRVELAELAA 171
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQ 166
+ + + +P + + Q
Sbjct: 172 EIYSDASHRVELAKNFMEPQAETEAQPEA 200
|
Length = 332 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 8e-05
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 661
S + +++ T V FS DGK LA+G D LW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-05
Identities = 12/91 (13%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI--LLQRHAQQQQQ 141
+A E ++Q+ +Q +Q++ +Q++ +Q +Q +Q + + +Q + A + +
Sbjct: 75 QQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKA 134
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ +++ +++ Q ++ + + + +
Sbjct: 135 KAEAEAEKKAKEEAKKQAEEEAKAKAAAEAK 165
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 8e-05
Identities = 14/81 (17%), Positives = 37/81 (45%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ 152
+ QQ+ +Q Q +++ Q Q + QQ L + +++ Q+ + Q
Sbjct: 140 PENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQ 199
Query: 153 QQQPPQQPQQQQPQQQQQRRD 173
+Q ++ + +++Q+R++
Sbjct: 200 LEQLQEKAAETSQERKQKRKE 220
|
Length = 1123 |
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 8e-05
Identities = 31/174 (17%), Positives = 52/174 (29%), Gaps = 20/174 (11%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPH---------QQQQQQQQQQQQLQMQQILLQRHA 136
A+ ++Q++ Q Q Q Q + +Q P Q Q QQQ Q
Sbjct: 361 AQRKEQRRAHLQDQFMQLQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQP---LGWP 417
Query: 137 QQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG--NTNGLLGNDSLMRQ 194
+ + + P + Q + L +
Sbjct: 418 RMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQS-LPLSQD 476
Query: 195 NPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQL---LDPNHASYI 245
P + A++ + K VL S KQ GE + L ++P A+ I
Sbjct: 477 LP-QPQSTASQGGQNKKLAQVLA-SATPQMQKQVLGERLFPLVEAIEPALAAKI 528
|
These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 47/297 (15%), Positives = 80/297 (26%), Gaps = 31/297 (10%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
+ ++++A+ Q Q+ + + LQ
Sbjct: 67 ETAKLSAAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGY---EASTDPEYIPDLQPDP 123
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGND 189
L + + Q Q + Q Q Q + ++ + Q Q+R A L +L
Sbjct: 124 SLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQG 183
Query: 190 SLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAA 249
RQ A + E+ Q + Q+ A
Sbjct: 184 MPPRQ-----AAFPQQGPPEQ-----------PPGYPQPPQGHPEQVQPQQFLPAPSQAP 227
Query: 250 AT----GQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMG 305
A Q Q Q P + + P P+
Sbjct: 228 AQPPLPPQLPQQPPPLQQP---QFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTP 284
Query: 306 IPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQLLL 362
PG QG N P +P L+QQ + + PQ Q+ L+ Q ++ L
Sbjct: 285 HPGLPQGQNAPL----PP-PQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREALS 336
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 875 ENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913
TL H G + ++A S + +AS S D V++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 15/93 (16%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E + K EQQ ++ ++Q+ +Q +Q+ + ++ +Q +Q + Q Q+ A++
Sbjct: 66 EQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAK-QAEEKQKQAEEA 124
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ Q + + + + + ++ + Q +++ +
Sbjct: 125 KAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-04
Identities = 32/155 (20%), Positives = 63/155 (40%), Gaps = 31/155 (20%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ 152
+ + Q+ QQ QQ+ + +++ +Q++Q+ Q+ + L + ++ QQQ + QQ
Sbjct: 262 RAELLQRLQQLQQRLAR--AMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQ 319
Query: 153 QQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLK 212
+ Q + + + +Q+ +R + L +QNP R+ + +
Sbjct: 320 RLQRALERRLRLAKQRLERL---------------SQRLQQQNP------QRRIERAQQR 358
Query: 213 LPVLRDSLDDAA------MKQRFGENMGQL--LDP 239
L L L A +QR QL L P
Sbjct: 359 LEQLEQRLRRAMRRQLKRKRQRLEALAQQLEALSP 393
|
Length = 438 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 12/103 (11%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 79 IETQLIKAREQQQQQQQQQ-----QQQQQQQQQSQQPPHQQQQQQQQQQQQLQ---MQQI 130
++ Q I+ RE+++Q++ ++ +Q + ++ Q+ + Q+++++Q++L+ +
Sbjct: 76 LQEQ-IEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFN 134
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ +++++ +++ ++ + + Q + ++++ + +++ R
Sbjct: 135 EERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERK 177
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Query: 87 REQQQQQQQ-----QQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+E+QQQQ+Q Q++ +Q QQ+ Q P + QQ+ +++ + +Q QR Q+ QQ
Sbjct: 42 KEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQECQQ 101
Query: 142 H---QQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q+Q ++QQQ Q+ ++ Q+ + + +
Sbjct: 102 RCQQQEQRPRRQQQCQRECREQYQEHGRGEGE 133
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 25/75 (33%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
QQ Q Q QQQQ QQP HQQ Q Q Q H Q Q
Sbjct: 3 YQQNTNQYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQ------QGHFMPPQPQPYPKQS 56
Query: 149 QQQQQQQPPQQPQQQ 163
QQQQ Q
Sbjct: 57 PQQQQPPQFSSFLSQ 71
|
The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 65 ARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQ 124
A E+H T+L K + Q +Q Q S Q +++Q QQQ
Sbjct: 187 AMVFEQHKSA-----RTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLLTAQQQ 241
Query: 125 LQMQ-QILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQ 161
Q L + QQ+ ++Q QQ + QPQ
Sbjct: 242 QQQSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQ 279
|
Length = 1047 |
| >gnl|CDD|204848 pfam12203, HDAC4_Gln, Glutamine rich N terminal domain of histone deacetylase 4 | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 1e-04
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 87 REQQQQQQQQQ-QQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
REQQ QQ+ +QQQQ Q+Q Q+Q + +Q + Q LQ H +QQQ+
Sbjct: 7 REQQLQQELLLLKQQQQIQKQLLIAEFQKQHENLTRQHEAQ-----LQEHLKQQQELLAM 61
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+QQ+ +++ + Q+Q+ + ++ RR+
Sbjct: 62 KRQQELLEKERKLEQQRQEQELEKHRRE 89
|
This domain is found in eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam00850. The domain forms an alpha helix which complexes to form a tetramer. The glutamine rich domains have many intra- and inter-helical interactions which are thought to be involved in reversible assembly and disassembly of proteins. The domain is part of histone deacetylase 4 (HDAC4) which removes acetyl groups from histones. This restores their positive charge to allow stronger DNA binding thus restricting transcriptional activity. Length = 92 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 1e-04
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
Q I+ Q QQ+ + + + Q+ + P Q++QQ + +Q Q + QQQ +
Sbjct: 433 QSIRFLPQSDQQRPVSRGRGRGQRGPRSQPQNQRRQQNRGRQSSQPPR-------QQQNR 485
Query: 142 HQQQHQQQQQQQQQPPQ-------QPQQQQPQ---QQQQRRD 173
Q +Q+Q Q Q P+ +P+ QPQ Q RR
Sbjct: 486 SNQNNQRQSQGPNQGPRGQGGYNLRPRTYQPQRYGGGQGRRW 527
|
Length = 582 |
| >gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQS--QQPPHQQQQQQQQQQQQLQMQQILLQRHA 136
+ QL K ++ Q + Q+++++ Q+++Q +Q ++ ++ +QQ+LQ +Q LQ+
Sbjct: 36 AQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQ 95
Query: 137 QQQQQHQQQHQQQQQQQ 153
Q QQ QQ QQ+ Q
Sbjct: 96 QAAQQELQQKQQELLQP 112
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157 |
| >gnl|CDD|147845 pfam05914, RIB43A, RIB43A | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 18/76 (23%), Positives = 42/76 (55%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
QL R+ Q+QQ Q+++++++++Q ++ +Q Q + L+ Q+ L++ ++Q
Sbjct: 279 PEQLAAIRKGQEQQLQEKERRREEEQLREKEWDRQAINQARAAVLLERQERRLRKELRKQ 338
Query: 140 QQHQQQHQQQQQQQQQ 155
Q ++Q+ QQ
Sbjct: 339 LDSANQQLAKEQKAQQ 354
|
This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterized in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells. Length = 379 |
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQ---QQQSQQPPHQQQQQQQQQQQQ 124
NE E L A +Q+Q ++Q Q + Q++++ +Q + Q+
Sbjct: 601 NETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQR 660
Query: 125 LQMQQILLQRHAQQQQQ-HQQQHQQQQQQ-QQQPPQQPQQQQPQQQQQRRD 173
LQ +Q L+ + +QQ + Q +Q Q Q +QQQ + + D
Sbjct: 661 LQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDD 711
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198 |
| >gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564 | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 11/83 (13%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
K E ++ T+ + ++QQ++++ +Q+++++++ Q+ + Q+ Q+
Sbjct: 269 KKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKL---QE 325
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQ 152
++ A+ +++ +++ ++ +Q+
Sbjct: 326 ERKEQLAKLRKEEKEREKEYEQE 348
|
This family of proteins has no known function. However, one of the members is annotated as an EF-hand family protein. Length = 349 |
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 24/191 (12%), Positives = 58/191 (30%), Gaps = 34/191 (17%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM-QQILLQRHAQQQQ 140
+ I A + +Q + + +Q +Q+ QQ + QL ++ L + +
Sbjct: 161 ERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELS 220
Query: 141 QHQQQHQQQQQQQQ--------------QPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLL 186
Q++ ++ + + + + + + R A
Sbjct: 221 ADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKPTA 280
Query: 187 GNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENM-------GQLLDP 239
L+ G +L PV + +RFG+ G ++
Sbjct: 281 PEKMLISSTGGFGAL------RGQLAWPV------TGRILRRFGQADGGGLRWKGMVIGA 328
Query: 240 NHASYIKSAAA 250
+ + +K+ A
Sbjct: 329 SAGATVKAIAD 339
|
Length = 420 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 2e-04
Identities = 28/62 (45%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 111 PHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPP--QQPQQQQPQQQ 168
P QQ QQ QQQ Q Q + Q QQ Q Q Q QQ Q P QPQ QQPQQ
Sbjct: 751 PVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQP 810
Query: 169 QQ 170
Sbjct: 811 VA 812
|
Length = 1355 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 7/85 (8%), Positives = 41/85 (48%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ ++ ++++ Q+Q++Q ++ ++Q +Q+Q ++ + + + A++ +
Sbjct: 102 RLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAK 161
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQ 169
+ + +++ + + +++
Sbjct: 162 KAAAEAKKKAEAEAAKKAAAEAKKK 186
|
Length = 387 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 2e-04
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 874 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913
S TL H G + ++A S + Y+AS S D +KLW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 12/93 (12%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+L Q++ +++++Q+++++ ++ ++ Q+Q+ Q+ +++Q++ ++ LQ +++
Sbjct: 203 ELRADLYQEEYERKERQKEKEEAEKRRR---QKQELQRAREEQIEEKEERLQEERAEEEA 259
Query: 142 -HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++ ++Q + ++ + ++++ ++ + RR+
Sbjct: 260 ERERMLEKQAEDEELEQENAEKRRMKRLEHRRE 292
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 9/114 (7%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 66 RTNEKHSEVAASYIETQLIKAR------EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ 119
R + E E + + E + + Q+++++Q++ +++ + ++ ++++
Sbjct: 83 REKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKE 142
Query: 120 QQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+++++ + +++ + + +++ + +++ + +++++++ ++ + QQ++ D
Sbjct: 143 EEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAED 196
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 112 HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
QQ Q Q L Q LQ+ + Q+Q + +QQ + + Q +Q
Sbjct: 59 KQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQ 114
|
Length = 390 |
| >gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
K++ Q+Q+ Q++Q++ ++ + QS++ QQ Q Q Q Q Q QQ
Sbjct: 149 KSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193
|
Length = 222 |
| >gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ--ILLQRHAQQQQQ 141
IK Q+ Q + + Q QP +Q Q ++ Q + +
Sbjct: 101 IKITLPNQEPAYYMQNHRSEPIQPTQPQYQSPTQTNVASMTIEETQSPNVPIEGINSSSE 160
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ + + + + + +
Sbjct: 161 QLRVELAELAAEIYSDASHRVELAKNFME 189
|
Length = 332 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 26/109 (23%), Positives = 51/109 (46%)
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
+ RT ++ ET+ AR + Q+ +Q+++ +Q+ ++Q + QQ+ +
Sbjct: 82 QLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELAR 141
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
+Q Q Q L+ A+Q++Q + Q Q Q Q+Q Q + Q
Sbjct: 142 LTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLD 190
|
Length = 499 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-04
Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 37/128 (28%)
Query: 85 KAREQQQQQQQQQQQQQ-------QQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
KAR Q +QQQ ++++Q +Q QQ + + ++Q Q+ +Q+ ++QQ+ +R +
Sbjct: 664 KARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQVQPRRKQR 723
Query: 138 QQQQ------------------------------HQQQHQQQQQQQQQPPQQPQQQQPQQ 167
Q Q + + + Q +Q +
Sbjct: 724 QLNQKVRIEQSVAEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPLPVVAQTAPEQDEEN 783
Query: 168 QQQRRDGA 175
+ RD
Sbjct: 784 NAENRDNN 791
|
Length = 1068 |
| >gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
I + A EQ+QQ+ Q+ ++ +Q+QQS + Q Q+ Q Q +L +
Sbjct: 41 IANRWQDA-EQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDV 99
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
+ +Q ++++Q+ + QQQ QQ
Sbjct: 100 ATARDEWLEQLEREKQEFFKALQQQTGQQ 128
|
Length = 250 |
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 17/95 (17%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 66 RTNEKHSEVAASYIETQLIKAR-------EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ 118
K E + + + + Q+Q QQ+QQ+ Q Q + ++ + +QQ+
Sbjct: 69 EAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELARKRYQKELEQQR 128
Query: 119 QQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQ 153
+Q ++ L+MQ+ + R ++ +++ + +++
Sbjct: 129 RQNEELLKMQEESVLRQEAMRRATEEEILEMRRET 163
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 12/80 (15%), Positives = 34/80 (42%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+QQ+ ++ + ++ + +Q Q++ + + + + + + ++ QQ
Sbjct: 530 RQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLE 589
Query: 147 QQQQQQQQQPPQQPQQQQPQ 166
Q Q + Q+ + P Q
Sbjct: 590 QLQARIQRLAARAPAWLAAQ 609
|
Length = 1486 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+QQ Q Q Q + + Q+ Q+Q+ + + QQ A +QQ +
Sbjct: 59 KQQAQNQTATNDALANQLTAL--QKAQESQKQELEGILKQQAKALDQANRQQAALAKQLD 116
Query: 149 QQQQQ 153
+ QQ+
Sbjct: 117 ELQQK 121
|
Length = 390 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 112 HQQQQQQQQQQ--QQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
H +QQ Q Q L Q LQ + Q+ +Q+ + +QQ + Q +QQ +
Sbjct: 57 HGKQQAQNQTATNDALANQLTALQ---KAQESQKQELEGILKQQAKALDQANRQQAALAK 113
Query: 170 Q 170
Q
Sbjct: 114 Q 114
|
Length = 390 |
| >gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILL-----QRHAQQQQQHQQ 144
+ Q+Q +++ ++ Q + Q+ ++++ Q+++Q+LQ Q L + Q+ QQ QQ
Sbjct: 34 KAAQKQLEKEFKKLQAELQK----KEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQ 89
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQ 167
+ QQ+QQ QQ QQ QQ+ Q
Sbjct: 90 ELQQKQQAAQQELQQKQQELLQP 112
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 24/105 (22%), Positives = 29/105 (27%), Gaps = 17/105 (16%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ----------------QQQQQ 124
Q + A +QQQ P Q Q
Sbjct: 75 LQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPAN 134
Query: 125 LQMQQILLQRHAQQQQQHQ-QQHQQQQQQQQQPPQQPQQQQPQQQ 168
+ Q QR QQ QQ Q QQQ Q+ + Q QQQ
Sbjct: 135 SPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQ 179
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|180700 PRK06800, fliH, flagellar assembly protein H; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
+E ++ K E+ QQ+ ++ Q +Q QQ +++QQ ++Q Q +Q+ ++
Sbjct: 32 VEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQE---HVQQQMKE 88
Query: 139 QQQHQQQHQQQQQQ 152
+ +QQ Q++QQ+
Sbjct: 89 IEAARQQFQKEQQE 102
|
Length = 228 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 4e-04
Identities = 16/71 (22%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ-QQQQQQLQMQQILLQRHAQQQQQH 142
++ R Q+ +++ + +Q+ ++ SQ+ Q Q++ ++ QQ+L+ + L+R ++Q +
Sbjct: 317 LQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKR 376
Query: 143 QQQHQQQQQQQ 153
++Q + QQ
Sbjct: 377 KRQRLEALAQQ 387
|
Length = 438 |
| >gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 17/99 (17%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
L + + + ++ +QQQ+ + + + + Q ++Q+L+ L QR Q Q
Sbjct: 293 EHLARRLQFRSPERLLSEQQQRLDELAIRLRRALENQLALKKQRLER---LTQRLNPQIQ 349
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLN 179
+ QQ+ QQ +++ + ++ +++ ++ + + L+
Sbjct: 350 RQQQRLQQLERRLDKALRRQLKRKRERLEALVEQLESLS 388
|
Length = 440 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 4e-04
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
IKA Q +QQ Q+ + Q + +S+ ++ +QQ ++ Q+ LLQ Q+ +
Sbjct: 299 IKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIR 358
Query: 144 QQHQQQQQQQQQPPQQPQQQQP--QQQQQ 170
H+ ++ QQ Q QQQ
Sbjct: 359 DAHEVATSIREISCQQHTLTQHIHTLQQQ 387
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 4e-04
Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 13/115 (11%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ--- 145
+QQ + +Q Q +QQQ +Q+Q Q Q + Q L R Q Q+ Q
Sbjct: 467 RQQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQGPRGQGGYNLRPRTYQPQRYGGGQGRR 526
Query: 146 ----------HQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDS 190
+ QQQQ QP + Q + + + G N N S
Sbjct: 527 WNPNPYRQSGQGRSQQQQPQPEARGNQSRTPGPGRGQGGRGNQNRNQRSGNNTVS 581
|
Length = 582 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 13/121 (10%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ--QQLQMQQI-------- 130
Q + R QQ QQ+ Q QQ + + Q QQQ + QQ
Sbjct: 138 DQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGAGDDES 197
Query: 131 -LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGND 189
L R + +Q+ + + +Q + Q + +R ++G + G+
Sbjct: 198 EALVRLREADGTLEQRIKGAEGGGAMKVL--KQPKKQAKSSKRRTIAQIDGIDSDDEGDG 255
Query: 190 S 190
S
Sbjct: 256 S 256
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|182789 PRK10863, PRK10863, anti-RNA polymerase sigma factor SigE; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 112 HQQQQQQQQQQQQLQM--QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQ 166
+ QQQQ Q+Q++++ Q LQR +Q +Q Q QQ Q P Q Q Q
Sbjct: 160 NGQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPGTQSLGTQSQ 216
|
Length = 216 |
| >gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 14/97 (14%), Positives = 35/97 (36%)
Query: 76 ASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRH 135
S A+ +Q+Q +Q Q + + +Q + + Q + Q+
Sbjct: 102 PSNGGGVEESAQLTAEQRQLLEQMQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKA 161
Query: 136 AQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ Q ++ + + +Q Q+ P+Q + +
Sbjct: 162 RTAEAQKTPVETEKIASKVKEAKQKQKALPKQTAETQ 198
|
FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis [Cellular processes, Cell division]. Length = 298 |
| >gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 4/104 (3%)
Query: 74 VAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
+ Q + Q+ + + + QQQ Q +Q Q + Q + Q+ L
Sbjct: 57 LRTFARSLQALNLELIQELNELKARLQQQLLQSREQ---LQLLIESLAQLSSEFQE-LAN 112
Query: 134 RHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHL 177
++ + + QQ +Q P + ++ ++Q ++R
Sbjct: 113 EIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQRIHESA 156
|
Length = 448 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 5e-04
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQ-------QQQQQQQQQLQMQQILL 132
E Q + RE+ Q++ +Q QQ+ QQ + + P QQ ++QQQQQ+Q Q
Sbjct: 44 EQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQE----C 99
Query: 133 QRHAQQQQQHQQQHQQQQ----QQQQQPPQQPQQQQPQQQQQRR 172
Q+ QQQ+Q ++ QQ Q +Q Q+ + + Q+ ++ R
Sbjct: 100 QQRCQQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEER 143
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 20/96 (20%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 63 FIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQ-------QSQQPPHQQQ 115
A+ E ++ A + +E ++A E+++ Q+Q QQ+QQ+ Q + Q +QQ
Sbjct: 68 LEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELARKRYQKELEQQ 127
Query: 116 QQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
++Q ++ ++Q + +L Q ++ + + +++
Sbjct: 128 RRQNEELLKMQEESVLRQEAMRRATEEEILEMRRET 163
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 5e-04
Identities = 32/162 (19%), Positives = 49/162 (30%), Gaps = 53/162 (32%)
Query: 64 IARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQ--------------- 108
+A T ++ EV T ++AR + +Q + Q QQQ +
Sbjct: 306 LAHTRQQIEEVNTRLQSTMALRARIRHHAAKQSAELQAQQQSLNTWLAEHDRFRQWNNEL 365
Query: 109 --------QPPHQQQQQQQQQQQ----------------------------QLQMQQILL 132
Q ++Q +Q QQQ Q Q+ L
Sbjct: 366 AGWRAQFSQQTSDREQLRQWQQQLTHAEQKLNALPAITLTLTADEVAAALAQHAEQRPLR 425
Query: 133 QRHAQQQQQHQQQHQQQQQQQQ--QPPQQPQQQQPQQQQQRR 172
QR Q Q ++ Q Q Q Q Q Q+ + R
Sbjct: 426 QRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMR 467
|
Length = 1047 |
| >gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-04
Identities = 15/85 (17%), Positives = 36/85 (42%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
E + T + Q +++ Q Q + QQQ+ + +++QQ+
Sbjct: 140 PENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQ 199
Query: 128 QQILLQRHAQQQQQHQQQHQQQQQQ 152
+ L ++ A+ Q+ +Q+ ++ Q
Sbjct: 200 LEQLQEKAAETSQERKQKRKEITDQ 224
|
Length = 1123 |
| >gnl|CDD|180700 PRK06800, fliH, flagellar assembly protein H; Validated | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 21/90 (23%), Positives = 49/90 (54%)
Query: 74 VAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
V+ S +L + + + +++ Q+ ++ Q+ H++ Q +Q+QQ+L+ ++ L
Sbjct: 13 VSFSEETYELQFPKPIEVEVEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLL 72
Query: 134 RHAQQQQQHQQQHQQQQQQQQQPPQQPQQQ 163
+Q Q+H QQ ++ + +Q Q+ QQ+
Sbjct: 73 ADREQFQEHVQQQMKEIEAARQQFQKEQQE 102
|
Length = 228 |
| >gnl|CDD|182398 PRK10350, PRK10350, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 5e-04
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 100 QQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ-QHQQQHQQQQQQQQQPPQ 158
Q Q SQQ Q Q QQ QQ+ + QQ+ Q QQQ Q+Q + Q+ QQ QP
Sbjct: 28 QPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKTQTRLQQQHLQNQINNNSQRVQQGQPGN 87
Query: 159 QPQQQQP 165
P +QQ
Sbjct: 88 NPARQQM 94
|
Length = 145 |
| >gnl|CDD|113452 pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorganising factor | Back alignment and domain information |
|---|
Score = 43.6 bits (102), Expect = 5e-04
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 98 QQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
Q Q P H Q Q + Q Q +H QQ QHQ+QHQQ
Sbjct: 291 HHQHQHHHHPSIPAHHQHQLPEGHQHDHQHHH----QHQQQDLQHQEQHQQH 338
|
ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication. ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 S. cerevisiae). The N-terminal two thirds of the protein are necessary for DNA binding, and the N-terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure. Length = 508 |
| >gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 13/86 (15%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query: 82 QLIKA---REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
QL+KA +++ ++ ++++++Q++Q + + +Q ++ + A++
Sbjct: 5 QLLKAGLVDKKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAK-----------AEK 53
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQ 164
++ ++ ++Q+Q + +Q Q +Q
Sbjct: 54 AERDRELNRQRQAEAEQKAIVAQIKQ 79
|
This domain, found in various prokaryotic proteins, has no known function. Length = 177 |
| >gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL-LQRHAQQQQQHQQ 144
RE + +QQ + +Q+ + +Q Q +QQ Q+ ++ + L Q A+ Q Q Q
Sbjct: 79 LRENEASLEQQLAEAKQRLEAERQRLRQARQQLQEARKAQEKFAELARQEQAEAQAQRQY 138
Query: 145 QHQQQQQ 151
+ +Q+
Sbjct: 139 LEELEQE 145
|
This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis. Length = 152 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 20/83 (24%), Positives = 44/83 (53%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+ Q A ++ QQ + ++ + Q +Q Q P ++Q+++ +++Q Q + L Q
Sbjct: 645 QAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSV 704
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQ 162
Q+ +Q+ + QQ Q ++ +Q Q
Sbjct: 705 QETEQEERVQQVQPRRKQRQLNQ 727
|
Length = 1068 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 7e-04
Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
Query: 64 IARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQ--QQQQQQQQSQQPPHQQQQQQQQQ 121
++ + SE + ++++ +Q + + QQ P Q Q QQQ
Sbjct: 29 LSHEEAQSSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQ 88
Query: 122 QQQL-QMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
Q Q Q Q QQ Q QQ QQ+ PP QPQ QQ Q
Sbjct: 89 QSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQ 137
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 7e-04
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
K ++Q+ Q++Q++ ++ + Q + Q+ P QQ Q Q Q QQQ Q
Sbjct: 150 SKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193
|
Length = 222 |
| >gnl|CDD|204565 pfam10956, DUF2756, Protein of unknown function (DUF2756) | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 7e-04
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 100 QQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ-QHQQQHQQQQQQQQQPPQ 158
Q Q SQQ Q Q QQ QQ+ + QQ+ Q QQQ Q+Q + QQ+ QQ QP
Sbjct: 28 QPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLQTQTRLQQQHLQNQLNNNQQRVQQGQPGN 87
Query: 159 QPQQQQ 164
+QQ
Sbjct: 88 LNARQQ 93
|
Some members in this family of proteins are annotated yhhA however currently no function is known. The family appears to be restricted to Enterobacteriaceae. Length = 104 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ-QQHQQQ 149
Q + Q Q P Q Q Q+ L Q + Q QQ
Sbjct: 106 GPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQ 165
Query: 150 QQQQQQPPQQPQQQQPQQ-QQQRRDGA 175
Q Q+ Q QQQ + Q+ DGA
Sbjct: 166 QSAQKNDESQLQQQPNGETPPQQTDGA 192
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 8e-04
Identities = 16/77 (20%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 79 IETQLIKAREQQQQQQQQQQQ--QQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHA 136
+ QL K +++Q + ++ ++ Q+ +++ + + +++++++LQ + QR
Sbjct: 19 AQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQ 78
Query: 137 QQQQQHQQQHQQQQQQQ 153
Q+ QQ Q+ QQ++ Q+
Sbjct: 79 QKLQQDLQKRQQEELQK 95
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 140 |
| >gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
+L + RE+ Q+ + +++Q QQ+ QQ QQQ+ +Q + + ++ L + Q+
Sbjct: 173 AELKQTREELAAQKAELEEKQSQQKTLLY--EQQAQQQKLEQARNERKKTLTGLESSLQK 230
Query: 141 QHQQ 144
QQ
Sbjct: 231 DQQQ 234
|
Length = 428 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 8e-04
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 671 LEEHSSLITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSLR-------TFMGHSASVM 722
L+ H+S I D++F+P LA+ S D T+RVW+ + S++ GH +
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 723 SLDFHPNKDDLICSCDGDGEIRYWSINN 750
+D++P ++CS D + W I N
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN 157
|
Length = 568 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 9e-04
Identities = 18/104 (17%), Positives = 50/104 (48%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ 128
+K + +A+ +++Q++ + + Q +Q+ Q + +Q + ++ QQ Q
Sbjct: 174 QKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAI 233
Query: 129 QILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q + +Q+ QQ + +Q +++++Q + Q +Q+ +
Sbjct: 234 QQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQ 277
|
Length = 499 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 9e-04
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 8/107 (7%)
Query: 72 SEVAASYIETQLIKAREQQQQQQQQQQQQ--------QQQQQQSQQPPHQQQQQQQQQQQ 123
S+V + + I+ Q + Q QQ+ Q Q+ Q Q+ Q
Sbjct: 186 SQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQ 245
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q+ + ++ +Q Q+ + + +Q+ Q Q +QQ
Sbjct: 246 QIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQA 292
|
Length = 499 |
| >gnl|CDD|223914 COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 9e-04
Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQ---QQQQQQQQQLQ 126
K ++ A + +++A Q + Q + Q + + + ++ Q +L
Sbjct: 89 KKGQLLARLDPSAVLQAALDQAEAQLARAQALLAPAELGDLQREAKLAAEKAAVSQAELD 148
Query: 127 MQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
Q LL+ + Q + +
Sbjct: 149 AAQALLRAAEALVEAAQAALASAKLNLEY 177
|
Length = 372 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.001
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQ-----QPPHQQQQQQQQQQQQLQMQQILL 132
Y + Q A + Q QQ QQ Q Q QQ Q QP +QQ QQ Q Q + LL
Sbjct: 791 YQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLL 850
Query: 133 QRHAQQQQQHQ 143
R+ + H+
Sbjct: 851 MRNGDSRPLHK 861
|
Length = 1355 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 33/124 (26%)
Query: 64 IARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQ---------PPHQQ 114
+ + N + E +E L Q+QQQ+ Q +Q ++ +
Sbjct: 839 LRQLNRRRVE-----LERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLA 893
Query: 115 Q-------------------QQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
QQ QL+ +LQ +Q +Q +Q +QQ QQ Q+
Sbjct: 894 DRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRD 953
Query: 156 PPQQ 159
QQ
Sbjct: 954 AKQQ 957
|
Length = 1486 |
| >gnl|CDD|238163 cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 26/96 (27%)
Query: 88 EQQQQQQQQQQQQ---------QQQQQQSQQPPHQQQQQQQQQQQ---QLQ--------- 126
+Q Q QQQ QQ QQ P QQ + +QQ QL
Sbjct: 2 QQCQPGQQQPQQPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQIPEQCRCE 61
Query: 127 -----MQQILLQRHAQQQQQHQQQHQQQQQQQQQPP 157
+Q ++ Q+ QQ+QQ Q+ ++ +Q Q P
Sbjct: 62 ALRQMVQGVIQQQQQQQEQQQGQEVERMRQAAQNLP 97
|
They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans. Length = 110 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPP----------------HQQQQQQQQQQQQLQMQQ 129
+++Q +Q QQQ +Q+ + P H +Q+ +Q+ L Q
Sbjct: 376 TSDREQLRQWQQQLTHAEQKLNALPAITLTLTADEVAAALAQHAEQRPLRQRLVALHGQI 435
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ Q+ Q Q Q Q+Q Q+ + +Q+ ++ QQ D
Sbjct: 436 VPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLAD 479
|
Length = 1047 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ 126
+ QL ++ Q+ Q+Q+ + +QQ ++ ++QQ +Q +LQ
Sbjct: 72 LANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQ 119
|
Length = 390 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.001
Identities = 15/95 (15%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
Q+++ + ++ QQ QQ ++ + Q++Q ++QQ L+ + ++ Q+
Sbjct: 222 QVLEKELKHLREALQQTQQSHAYLTQKR---EAQEEQLKKQQLLKQLRARIEELRAQEAV 278
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
++ ++ + ++ P + Q +Q+ H
Sbjct: 279 LEETQERINRARKAAPLAAHIKAVTQIEQQAQRIH 313
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.001
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
K ++ +QQ ++Q++ Q Q+ + + +++I Q+H Q
Sbjct: 320 MRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQ 379
Query: 140 QQHQQQHQQQ--QQQQQQPPQQPQQQQPQQQQQ 170
H Q Q+ Q+ Q ++ Q +Q
Sbjct: 380 HIHTLQQQKTTLTQKLQSLCKELDILQREQATI 412
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
Q + QQ Q + + Q QQ+ +Q + +I L Q+ + Q+
Sbjct: 61 LNPQSYVETTPPPFQQPQTEESESENEVQIQQEVEQSVDEIKITLP---NQEPAYYMQNH 117
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDS 190
+ + Q P QPQ Q P Q + G +S
Sbjct: 118 RSEPIQ---PTQPQYQSPTQTNVASMTIEETQSPNVPIEGINS 157
|
Length = 332 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 22/90 (24%), Positives = 35/90 (38%)
Query: 83 LIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQH 142
L +++Q Q Q + Q + Q+ Q + Q + L R A QQ
Sbjct: 170 LQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQT 229
Query: 143 QQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q QQ+ Q Q QQ + Q +++ R
Sbjct: 230 AQAIQQRDAQISQKAQQIAARAEQIRERER 259
|
Length = 499 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 22/88 (25%), Positives = 35/88 (39%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
L + R Q + Q Q Q Q+Q Q S Q + + Q++ + L A Q
Sbjct: 155 TLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQA 214
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
++ ++ QQ Q QQ+ Q Q
Sbjct: 215 RTEELARRAAAAQQTAQAIQQRDAQISQ 242
|
Length = 499 |
| >gnl|CDD|204565 pfam10956, DUF2756, Protein of unknown function (DUF2756) | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.001
Identities = 25/68 (36%), Positives = 32/68 (47%)
Query: 105 QQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQ 164
Q Q P QQ+ Q Q Q QQ+Q + +L Q+ Q + QQ Q Q QQ QQ Q
Sbjct: 28 QPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLQTQTRLQQQHLQNQLNNNQQRVQQGQPGN 87
Query: 165 PQQQQQRR 172
+QQ
Sbjct: 88 LNARQQVL 95
|
Some members in this family of proteins are annotated yhhA however currently no function is known. The family appears to be restricted to Enterobacteriaceae. Length = 104 |
| >gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 17/84 (20%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E+ KA ++Q +++ +++Q + ++ + + Q+ +++ Q+ + + ++ ++
Sbjct: 12 ESPAGKAAQKQLEKEFKKRQAELEKLEKEL----QKLKEKLQKDAATLSEAAREKKEKEL 67
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQ 163
Q+ Q+ Q++QQ+ QQ Q+ QQ+
Sbjct: 68 QKKVQEFQRKQQKLQQDLQKRQQE 91
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 140 |
| >gnl|CDD|161783 TIGR00237, xseA, exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
I + Q + Q+ + + HQ++ + +Q LQ Q + QQ Q +
Sbjct: 252 IVSPNQDELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEK 311
Query: 144 QQHQQQ----------QQQQQQPPQQPQQQQPQQQQQR 171
+ ++Q +Q++ + ++ Q P Q R
Sbjct: 312 LEKRKQAALNKQLERTRQKKTRLTKRLTQTNPSPQILR 349
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits [DNA metabolism, Degradation of DNA]. Length = 432 |
| >gnl|CDD|204784 pfam11932, DUF3450, Protein of unknown function (DUF3450) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 74 VAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI--L 131
AA+ L +A QQ Q Q++ + Q Q+ + + +++I L
Sbjct: 15 GAAAAAAASLDQALAAAQQTVAAAAQSQKKIDKW-----ADQTQELLAEIRQLLKEIENL 69
Query: 132 LQRHAQQQQQHQQQHQQQQQQQQQ 155
+ Q Q+ Q Q+ QQQ
Sbjct: 70 RVYNDQLQRLVANQQQEIASLQQQ 93
|
This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 260 amino acids in length. Length = 250 |
| >gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 19/127 (14%), Positives = 30/127 (23%), Gaps = 9/127 (7%)
Query: 95 QQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
Q Q Q S++ + Q+ M QQ ++ Q
Sbjct: 11 QAQSQVHTGAASSKKSARPHRAYANFSAGQMGMPPYTTPPLQQQSRRQIDQAATAMHNTG 70
Query: 155 QPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLP 214
P P Q Q++ + G P N + E P
Sbjct: 71 ANNPAPSVMSPAFQSQQKFSS---------PYGGSMADGTAPKPTNPLVPVDLFEDQPPP 121
Query: 215 VLRDSLD 221
+ L
Sbjct: 122 ISDLFLP 128
|
Length = 861 |
| >gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 63 FIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ 122
F E AA E + +++ +++ + +QQ+ + + + + +
Sbjct: 24 FDPPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGKAEGRAE 83
Query: 123 QQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQ 159
Q + AQ +Q + Q Q Q Q
Sbjct: 84 GYEAGYQ---EGLAQGLEQGLAEGQAQAAPQAAQLQA 117
|
Length = 246 |
| >gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.001
Identities = 12/97 (12%), Positives = 25/97 (25%), Gaps = 2/97 (2%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
Q + +Q+ H + +++ + Q QQ Q+ QQ
Sbjct: 197 HMNQGLRARQEMMGLGIMAGGVYGVHDGRSKRRLVDRYPQFQQG--QKQVLSPQQRFLHG 254
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTN 183
++ + PP + G
Sbjct: 255 MERYEASGMPPPAEWAGSNGLHVLPGRREEVPRGIFR 291
|
Length = 505 |
| >gnl|CDD|213398 cd12191, gal11_coact, gall11 coactivator domain | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.001
Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 25/90 (27%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQ---------PPHQQQQQQ----------------QQQQQ 123
QQQQQ QQQQQQQ Q Q PP + QQ
Sbjct: 1 PQQQQQPQQQQQQQMPQNPQLVNMMDNMPIPPQLLAKIPNLPPEVKTWRQLKAWLQQNNI 60
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQ 153
Q + + + Q Q+ QQQQQQQ
Sbjct: 61 PPQAMEQIKEVQQTHFQLLMQRRQQQQQQQ 90
|
Gall11/MED15 acts in the general regulation of GAL structural genes and is required for full expression for several genes in this pathway, including GALs 1,7, and 10 in Saccharomyces cerevisiae. GAL11 function is dependent on GCN4 functionality and binds GCN4 in a degenerate manner with multiple orientations found at the GCN4-Gal11 interface. Length = 90 |
| >gnl|CDD|197397 cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9) | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.001
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 87 REQQQQQQQQQQQQQQQQQ--------QSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
REQQ QQ+ +QQQQ Q Q Q +Q + Q Q+ Q Q++L + Q+
Sbjct: 5 REQQLQQELLALKQQQQIQKQLLIAEFQKQHENLTRQHEAQLQEHIKQQQEMLAIKQQQE 64
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQ 163
+ Q++ +QQ+Q+Q+ Q+ +QQ
Sbjct: 65 LLEKQRKLEQQRQEQELEKQRREQQ 89
|
This superfamily consists of a glutamine-rich N-terminal helical extension to certain Class IIa histone deacetylases (HDACs), including HDAC4, HDAC5 and HDAC9; it is missing in HDAC7. It is referred to as the glutamine-rich domain, and confers responsiveness to calcium signals and mediates interactions with transcription factors and cofactors. This domain is able to repress transcription independently of the HDAC's C-terminal, zinc-dependent catalytic domain. It has many intra- and inter-helical interactions which are possibly involved in reversible assembly and disassembly of proteins. HDACs regulate diverse cellular processes through enzymatic deacetylation of histone as well as non-histone proteins, in particular deacetylating N(6)-acetyl-lysine residues. Length = 90 |
| >gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.001
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 80 ETQLIKAREQQQQ--QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
E +L++ +E+Q+Q +Q Q+ +Q +QQ + P ++ Q+ Q Q Q
Sbjct: 99 EKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQPAGVNVANNPQPQVQ 158
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
Q Q + Q+ P Q +P Q
Sbjct: 159 PQFGPNPQQRINPQRFGFPMQPNMGMRPGFNQ 190
|
This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence. Length = 279 |
| >gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 15/47 (31%), Positives = 17/47 (36%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ 128
QL+ R Q Q Q Q QQ QQ QQQ + Q
Sbjct: 109 QLLGGRPQGDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQP 155
|
Length = 172 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 10 KMLDVYIHDYLVKRDLKASAQAFQAEGKVS 39
L+ I +YL++ + +A+ Q E +S
Sbjct: 4 SELNRLILEYLLRNGYEETAETLQKESGLS 33
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.002
Identities = 23/90 (25%), Positives = 28/90 (31%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E + A E QQ Q Q Q + QQP QQ +Q Q Q
Sbjct: 370 EPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPA 429
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
QQ +Q Q +QQ Q
Sbjct: 430 QQPYYAPAPEQPVAGNAWQAEEQQSTFAPQ 459
|
Length = 1355 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQS-QQPPHQQQQQQQQQQQQLQMQQILLQRHA-- 136
ETQ ++ Q ++ Q + S +QPP +Q + + Q A
Sbjct: 19 ETQKELSKLQLSHEEAQSSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPA 78
Query: 137 ----QQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
Q QQ Q Q Q Q P Q Q PQQ +++
Sbjct: 79 PQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQE 119
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
+Q +Q + Q+QQ Q Q Q QQ + L + + Q + Q QQ +
Sbjct: 783 EQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENT 842
Query: 150 QQQQQQPPQQPQQQQPQQQQQ 170
+Q + Q Q +QQQQ
Sbjct: 843 TRQGEIRQQLKQDADNRQQQQ 863
|
Length = 1047 |
| >gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 112 HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
QQQ Q Q+ Q QQ+ + AQ+ Q+ Q + QQQ + ++Q Q+Q
Sbjct: 54 GQQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQ 112
|
Length = 391 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.002
Identities = 12/90 (13%), Positives = 63/90 (70%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
T+L+ + +Q ++Q++Q++Q++++Q+ Q +++ +++ +++L+ ++ ++ ++ +
Sbjct: 25 TRLLAEKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAR 84
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ +++ +++ +++++ Q+ Q++ +Q+++
Sbjct: 85 EKEEKAKRKAEEEEKQEQEEQERIQKQKEE 114
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 99 QQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQ 158
Q + QS Q + + + Q+ Q + QQ + Q +QQQ +
Sbjct: 433 QSIRFLPQSDQQRPVSRGRGRGQRGPRSQPQNQRR---QQNRGRQSSQPPRQQQNRSNQN 489
Query: 159 QPQQQQPQQQQQRRDGAHLLNGNT 182
+Q Q Q R G + L T
Sbjct: 490 NQRQSQGPNQGPRGQGGYNLRPRT 513
|
Length = 582 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A +Q Q QQ+ Q Q+ Q +Q +++++Q Q+L+ Q L++ Q + + Q
Sbjct: 225 AAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQA 284
Query: 146 HQQQQQQQQQPPQQPQ------QQQPQQQQQRRDGAHLL 178
+ + +QQ Q+ Q Q+ Q Q Q + A LL
Sbjct: 285 YVRLRQQAAAT-QRGQVLAGAAQRVAQAQAQAQAQAQLL 322
|
Length = 499 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL---LQRHAQQQQ 140
I+ RE+Q Q+ + Q + +Q+ + +Q + +QQ Q Q+L QR AQ Q
Sbjct: 254 IRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQRGQVLAGAAQRVAQAQA 313
Query: 141 QHQQQHQQQQQ-------QQQQPPQQPQQQQP 165
Q Q Q Q + ++ P++ ++Q+P
Sbjct: 314 QAQAQAQLLSSANRPAALRLRRSPRRGRRQRP 345
|
Length = 499 |
| >gnl|CDD|161783 TIGR00237, xseA, exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 21/99 (21%), Positives = 44/99 (44%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+L +A + Q++ + +Q Q Q P ++ QQ Q ++ + +Q L + ++
Sbjct: 268 NVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAALNKQLERT 327
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
+Q + + ++ Q PQ + Q +Q RR A
Sbjct: 328 RQKKTRLTKRLTQTNPSPQILRAQTRTEQLNRRLNALKN 366
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits [DNA metabolism, Degradation of DNA]. Length = 432 |
| >gnl|CDD|161783 TIGR00237, xseA, exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 18/98 (18%), Positives = 39/98 (39%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
Q++ + +Q +Q P + QQ Q ++L+ ++ ++ + ++
Sbjct: 276 DTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAALNKQLERTRQKKTRLT 335
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLL 186
++ Q P Q + Q + +Q R L N N L
Sbjct: 336 KRLTQTNPSPQILRAQTRTEQLNRRLNALKNAQANLKL 373
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits [DNA metabolism, Degradation of DNA]. Length = 432 |
| >gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 15/46 (32%), Positives = 17/46 (36%)
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
Q Q + Q QQ + QQ QQQ PQQ PQ
Sbjct: 116 QGDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQPAPQPAA 161
|
Length = 172 |
| >gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 97 QQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
+ + + QQQ QQQQ++QQQQ++ Q Q IL Q
Sbjct: 3 RARLAELQQQQGGLEEQQQQEEQQQQEEAQKQAILRQ 39
|
This domain is believed to bind double-stranded DNA of 20 bases length. Length = 105 |
| >gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.002
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 7/48 (14%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL 131
I+ + QQQQ ++QQQQ+ +QQQQ++ Q+Q ++QIL
Sbjct: 1 IRRARLAELQQQQGGLEEQQQQE-------EQQQQEEAQKQAILRQIL 41
|
This domain is believed to bind double-stranded DNA of 20 bases length. Length = 105 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 8/111 (7%), Positives = 50/111 (45%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ ++ +++++ ++++ +Q + ++ ++ + + + ++ ++ Q
Sbjct: 153 ATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQG 212
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQN 195
++++ ++ ++ ++++ ++ R D G+ +G G R+
Sbjct: 213 DRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRG 263
|
Length = 672 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 657 AVLWHTDTLKSKTN---LEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLR 712
AVL HTD K +N L I DV F+P P +L T+S D T+ W G +
Sbjct: 54 AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN 113
Query: 713 T------FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 763
GH+ V + FHP+ +++ S D + W + G V K + Q
Sbjct: 114 ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170
|
Length = 493 |
| >gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.002
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ 122
+Q +QQQQQ QQQ Q + P QQ Q QQ
Sbjct: 49 DQTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQQ 83
|
Length = 84 |
| >gnl|CDD|220964 pfam11068, DUF2869, Protein of unknown function (DUF2869) | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 85 KAREQQQQQQQQQQQQQQQ-QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
+ + + Q+Q Q +Q+ QQ + Q Q+ + ++Q QQ +Q+Q Q+ Q++ +
Sbjct: 20 ELQAELQEQLTQLEQELQQLEFQGQKAIKEIRKQSAQQIEQIQ------QQVEQERAKRL 73
Query: 144 QQHQQQQQQQQQ 155
+Q Q Q +Q
Sbjct: 74 EQKNQLLFQIEQ 85
|
This bacterial family of proteins has no known function. Length = 131 |
| >gnl|CDD|221016 pfam11180, DUF2968, Protein of unknown function (DUF2968) | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+ I A E + ++ Q Q Q Q+Q Q +QQQ + + + QR A Q Q
Sbjct: 119 RQIAASEARAERLQADLQLAQAQEQ--------QVAARQQQARQEAVALEAQRQAAQAQL 170
Query: 142 HQQQHQQQQQQQQQ 155
+ Q Q +Q Q QQ
Sbjct: 171 RKLQRQIRQLQAQQ 184
|
This family of proteins has no known function. Length = 192 |
| >gnl|CDD|197399 cd10163, ClassIIa_HDAC9_Gln-rich-N, Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase | Back alignment and domain information |
|---|
Score = 37.8 bits (87), Expect = 0.002
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Query: 87 REQQQQQQ----QQQQQQQQQ---QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
RE+Q QQ+ QQQQQ Q+Q + +Q + +Q Q Q Q+ L++QQ LL QQ+
Sbjct: 5 REKQLQQELLLIQQQQQIQKQLLIAEFQKQHENLTRQHQAQLQEHLKLQQELLAMKQQQE 64
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQ 164
++Q +QQ+Q+Q+ + ++QQ
Sbjct: 65 LLEKEQKLEQQRQEQELERHRREQQ 89
|
This family consists of the glutamine-rich domain of histone deacetylase 9 (HDAC9). It belongs to a superfamily that consists of the glutamine-rich N-terminal helical extension to certain Class IIa histone deacetylases (HDACs), including HDAC4, HDAC5 and HDCA9; it is missing from HDAC7. This domain confers responsiveness to calcium signals and mediates interactions with transcription factors and cofactors, and it is able to repress transcription independently of the HDAC C-terminal, zinc-dependent catalytic domain. It has many intra- and inter-helical interactions which are possibly involved in reversible assembly and disassembly of proteins. HDACs regulate diverse cellular processes through enzymatic deacetylation of histone as well as non-histone proteins, in particular deacetylating N(6)-acetyl-lysine residues. Length = 90 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.5 bits (93), Expect = 0.003
Identities = 52/237 (21%), Positives = 82/237 (34%), Gaps = 33/237 (13%)
Query: 475 PAGSVTLDGSMSNSFRGND--------QTGRKRKQPVSSSGPANSSGTANTAGPSPSSAP 526
P GS+ GS + R D +T V S + + +
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVR- 309
Query: 527 STPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSN----QLWDDKDLELRAD 582
T + S+ H G S + F DG+ ++ S+ +LWD + +
Sbjct: 310 -LWDLETGKLLSSLTLKGHEGPVSS--LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366
Query: 583 MDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFS 642
++ S+ + + + + D R D+S G + + TS+V FS
Sbjct: 367 LEGHSNVLSVSFSPDGRVV--SSGSTDGTVRLWDLSTGSLLRNLDGH---TSRVTSLDFS 421
Query: 643 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 699
DGK LA+G D LW T V FSP LA+ S D +V
Sbjct: 422 PDGKSLASGSSDNTIRLWDLKTSLKS------------VSFSPDGKVLASKSSDLSV 466
|
Length = 466 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 104 QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ--QQQPPQQPQ 161
Q +Q +Q Q +QQ Q+ ++ +Q+Q Q Q+Q QQ +QQ Q
Sbjct: 113 QLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQS 172
Query: 162 QQ--QPQQQQQR 171
+ Q QQQ R
Sbjct: 173 RTTEQSWQQQTR 184
|
Length = 319 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 19/119 (15%), Positives = 67/119 (56%), Gaps = 19/119 (15%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQ--------QQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
EK EVA + Q +A +++++ Q++ +++++Q+++ ++ +++++
Sbjct: 179 EKEREVAR--LRAQQEEAEDEREELDELRADLYQEEYERKERQKEK------EEAEKRRR 230
Query: 121 QQQQLQ---MQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
Q+Q+LQ +QI + Q+++ +++ ++++ ++Q + +Q+ ++++ + H
Sbjct: 231 QKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEH 289
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 81 TQLIKAREQQQQQQQQ--QQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
QL + E Q+QQ Q Q Q Q Q P +Q Q ++ Q+ AQQ
Sbjct: 783 EQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQL-----AQQ 837
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
+++ + + +QQ +Q QQQQ QQ
Sbjct: 838 LRENTTRQGEIRQQLKQDADNRQQQQALMQQ 868
|
Length = 1047 |
| >gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL 131
++ Q E+ ++ +QQ+ QQ+QQ+ Q +Q Q QQ+ QQ+QQ +Q I
Sbjct: 65 LQKQAATLSEEARKAKQQELQQKQQELQQKQ---QAAQQELQQKQQELLQPIY 114
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 15/80 (18%), Positives = 25/80 (31%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
Q Q Q + QQ+ QL QQ Q++ + Q Q Q + Q
Sbjct: 128 VTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQ 187
Query: 152 QQQQPPQQPQQQQPQQQQQR 171
Q + + ++
Sbjct: 188 QTDGAGDDESEALVRLREAD 207
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|182398 PRK10350, PRK10350, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.003
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
+Q+ Q Q Q QQ QQ+ +QQ Q + QQQ Q Q+ QR Q Q + Q
Sbjct: 36 QQRMQTQMQTQQIQQKGMLNQQLKTQTRLQQQHLQNQINNNS---QRVQQGQPGNNPARQ 92
Query: 148 QQQQQQQ--------QPPQQPQQQQPQQQQQRRD 173
Q P QQ +++ D
Sbjct: 93 QMLPNTNGGMLNSNRNPDSSLNQQHMLPERRNGD 126
|
Length = 145 |
| >gnl|CDD|197397 cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9) | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 0.003
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+QQ QQ+ +QQQQ Q Q + Q+Q + +Q + Q LQ H +QQQ+ QQ
Sbjct: 6 EQQLQQELLALKQQQQIQKQLLIAEFQKQHENLTRQHEAQ---LQEHIKQQQEMLAIKQQ 62
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRD 173
Q+ ++Q + Q+Q+ + ++QRR+
Sbjct: 63 QELLEKQRKLEQQRQEQELEKQRRE 87
|
This superfamily consists of a glutamine-rich N-terminal helical extension to certain Class IIa histone deacetylases (HDACs), including HDAC4, HDAC5 and HDAC9; it is missing in HDAC7. It is referred to as the glutamine-rich domain, and confers responsiveness to calcium signals and mediates interactions with transcription factors and cofactors. This domain is able to repress transcription independently of the HDAC's C-terminal, zinc-dependent catalytic domain. It has many intra- and inter-helical interactions which are possibly involved in reversible assembly and disassembly of proteins. HDACs regulate diverse cellular processes through enzymatic deacetylation of histone as well as non-histone proteins, in particular deacetylating N(6)-acetyl-lysine residues. Length = 90 |
| >gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional | Back alignment and domain information |
|---|
Score = 37.2 bits (86), Expect = 0.003
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQ 124
+K + Q +QQQQQ QQQ Q Q QQ Q Q
Sbjct: 42 VKEMSKDDQTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQ 82
|
Length = 84 |
| >gnl|CDD|222709 pfam14362, DUF4407, Domain of unknown function (DUF4407) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 19/135 (14%), Positives = 39/135 (28%), Gaps = 30/135 (22%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
I+T L QQ++Q Q Q + + Q + + Q + + AQ
Sbjct: 110 IDTVL--LEIQQEEQAAAQAQVAAGFRPKIAALTAEIAALQAEIDEAQAEVNAAYQEAQC 167
Query: 139 Q----------------QQHQQQHQQQQQQ-----------QQQPPQQPQQQQPQQQQQR 171
+ ++ +++ Q + Q Q + +Q
Sbjct: 168 EAEGTGGTGVAGKGPVYKEKREKLDAAQARLETLKARLDAAIAQLEAQKAALERNRQAAV 227
Query: 172 RDGAHLLNGNTNGLL 186
+ +GLL
Sbjct: 228 AE-KQARIEANDGLL 241
|
This family of proteins is found in bacteria. Proteins in this family are typically between 366 and 597 amino acids in length. There is a single completely conserved residue R that may be functionally important. Length = 297 |
| >gnl|CDD|234937 PRK01294, PRK01294, lipase chaperone; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 27/112 (24%), Positives = 38/112 (33%), Gaps = 16/112 (14%)
Query: 76 ASYIETQLIKAREQQQQQQQQQQ-----QQQQQQQQSQQPPHQQQQQ----------QQQ 120
A+ R Q+ Q+QQ Q Q S Q + Q +Q
Sbjct: 213 AALEAQLPEDLRAALQESQRQQALLQQLAQLQASGASPQELRLMRAQLVGPEAAQRLEQL 272
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
QQ+ QQ AQ+ Q Q +Q Q Q +QQ+ Q+ R
Sbjct: 273 DQQRAAWQQRYDDYLAQRAQILNAAGLSPQDRQAQ-IAQLRQQRFSPQEALR 323
|
Length = 336 |
| >gnl|CDD|233816 TIGR02302, aProt_lowcomp, TIGR02302 family protein | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL-LQRHAQQQQQHQQQ 145
Q +Q QQ + QQ +P + +QQ Q M QI L R + Q Q
Sbjct: 534 AAMQTYMRQLAQQLRNNPQQLARPLDPNTKVLRQQDLQNMMDQIENLARSGDRDQAKQLL 593
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q QQ QP Q Q Q
Sbjct: 594 SQLQQMMNNLQMGQPGQGQQMGDQS 618
|
Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model. Length = 851 |
| >gnl|CDD|219111 pfam06625, DUF1151, Protein of unknown function (DUF1151) | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.003
Identities = 11/64 (17%), Positives = 41/64 (64%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ 152
Q+ + Q+ ++++ Q +Q+++++ ++ Q ++++ L++R + +Q ++ ++ ++Q
Sbjct: 48 NQKPELQRVLEKRKRDQVLKEQKEEEEAKRLQSELERELMKRAQKLEQLELEKAKEDEEQ 107
Query: 153 QQQP 156
+Q P
Sbjct: 108 EQIP 111
|
This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 122 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
E+ Q +Q +Q + Q+Q Q Q Q Q QQ + + L +Q QQ Q
Sbjct: 776 EETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLA 835
Query: 148 QQQQQ----QQQPPQQPQQQQPQQQQQR 171
QQ ++ Q + QQ +Q +QQQ+
Sbjct: 836 QQLRENTTRQGEIRQQLKQDADNRQQQQ 863
|
Length = 1047 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 25/110 (22%)
Query: 89 QQQQQQQQ------QQQQQQQQQQSQQPPHQQQQQQQQQQQQL----------------Q 126
QQQQQQ + QQ+ + QQ Q +++ Q QL +
Sbjct: 238 AQQQQQQSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWE 297
Query: 127 MQQILLQRHAQQQQQHQQ---QHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
Q A +QQ ++ + Q + + +Q + Q Q++
Sbjct: 298 RIQEQSAALAHTRQQIEEVNTRLQSTMALRARIRHHAAKQSAELQAQQQS 347
|
Length = 1047 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 90 QQQQQQQQ----------QQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ--ILLQRHAQ 137
QQQQQQ QQ+ ++QQ+ Q +++ Q Q L + Q L+ H +
Sbjct: 238 AQQQQQQSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWE 297
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
+ Q+ +QQ ++ + Q + + R A
Sbjct: 298 RIQEQSAALAHTRQQIEEVNTRLQSTMALRARIRHHAAK 336
|
Length = 1047 |
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 14/71 (19%), Positives = 32/71 (45%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
K Q+ Q +QQ + + + +QQ + Q +Q Q++Q+L Q+ A +
Sbjct: 652 KQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDD 711
Query: 145 QHQQQQQQQQQ 155
+ + ++ +
Sbjct: 712 FRELRTERLAK 722
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.004
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQ-----QQQQQQQQSQQPPHQQQQQQQQQQQ 123
++ + + + Q AR +Q Q Q + +Q++Q + Q Q+Q Q
Sbjct: 123 QELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASAT 182
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQ-----QPQQQQPQQQQQRRD 173
QL+ Q + L+ + Q +Q Q + Q + QQ Q Q+RD
Sbjct: 183 QLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRD 237
|
Length = 499 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 15/112 (13%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQ---QQQQQQQQQQQLQMQQILLQRH 135
+ +L AR+ + QQ+ + +Q Q Q Q++Q + Q Q LQ Q LQ
Sbjct: 121 VRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQAS 180
Query: 136 AQQ-----------QQQHQQQHQQQQQQQQQPPQQPQQ-QQPQQQQQRRDGA 175
A Q Q +Q+ Q + + ++ + Q+ A
Sbjct: 181 ATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQA 232
|
Length = 499 |
| >gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 6/116 (5%)
Query: 63 FIARTNEKHSEVAASYIETQLIKAREQQQQQQ--QQQQQQQQQQQQSQQPPHQQQQQQQQ 120
+ R + E+AA +E L+ + + +Q + Q + Q ++ + + QQ
Sbjct: 26 RLGRLEQMLGELAAV-LEQLLLLLAFRAEAEQLRTFARSLQALNLELIQELNELKARLQQ 84
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
Q Q + Q LL + Q + Q+ + + + + QQ ++
Sbjct: 85 QLLQSREQLQLLI---ESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPL 137
|
Length = 448 |
| >gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional | Back alignment and domain information |
|---|
Score = 36.9 bits (85), Expect = 0.004
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI 130
++ K+ ++ + Q +QQQQQ Q Q P+Q + Q QQ Q QQ+
Sbjct: 36 RIFKSEVKEMSKDDQTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQQV 84
|
Length = 84 |
| >gnl|CDD|217298 pfam02948, Amelogenin, Amelogenin | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.004
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 96 QQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM---QQILLQRHAQQQQQHQQQHQQQQQQ 152
Q QQQQ + PH Q QQ + + ++ Q Q QH Q
Sbjct: 55 PQMPQQQQSAHPKLTPHHQLLILPPQQPMMPVPGHHPMVPMTGQQPHLQPPAQHPLQPTY 114
Query: 153 QQQP-PQQPQQQQPQQQQQ 170
Q P PQQP QP Q Q
Sbjct: 115 GQNPQPQQPTHTQPPVQPQ 133
|
Amelogenins play a role in biomineralisation. They seem to regulate the formation of crystallites during the secretory stage of tooth enamel development. thought to play a major role in the structural organisation and mineralisation of developing enamel. They are found in the extracellular matrix. Mutations in X-chromosomal amelogenin can cause Amelogenesis imperfecta. Length = 174 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 10/97 (10%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
+E ++ + E+ + ++ + +++ ++ ++ Q +++ ++ +Q+ + L R +
Sbjct: 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+Q +++ Q ++ + + + ++ ++R + A
Sbjct: 742 VEQLEERIAQLSKELTE-----LEAEIEELEERLEEA 773
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|221776 pfam12795, MscS_porin, Mechanosensitive ion channel porin domain | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 15/94 (15%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
++T+ +A QQQ + +++ Q+ + + Q Q Q+ LQ + L+ ++
Sbjct: 111 LQTRPERA---QQQLSEARRRLQEIRNRLQALSPGGTPLAQAQRTLLQAELAALKAQIEE 167
Query: 139 QQQHQQQHQQQQQ--QQQQPPQQPQQQQPQQQQQ 170
+ + +Q+ + Q+ + + ++ + + Q
Sbjct: 168 LELELLSNNNRQELLRLQRDLLKKRIERLEAELQ 201
|
The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this MscS_porin is towards the N-terminal of the molecules. The high concentration of negative charges at the extracellular entrance of the pore helps select the cations for efflux. Length = 239 |
| >gnl|CDD|234354 TIGR03789, pdsO, proteobacterial sortase system OmpA family protein | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 113 QQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
Q QQ+QQ L +Q L++ + QQ Q + QQ QQQ
Sbjct: 84 QHIAQQRQQMVALTQKQQALEQLEAEYQQAQVHLETLQQDQQQ 126
|
A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. Length = 239 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 913 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.98 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.98 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.93 | |
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.92 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.92 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.91 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.91 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.9 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.9 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.89 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.87 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.87 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.87 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.86 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.86 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.86 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.85 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.85 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.84 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.84 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.84 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.84 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.83 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.83 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.83 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.81 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.8 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.8 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.8 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.78 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.77 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.77 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.76 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.76 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.75 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.75 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.75 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.74 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.73 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.73 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.73 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.73 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.7 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.69 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.69 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.68 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.68 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.67 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.66 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.65 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.64 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.64 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.62 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.62 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.62 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.58 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.58 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.58 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.57 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.57 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.57 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.56 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.55 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.55 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.55 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.55 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.54 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.54 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.54 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.52 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.52 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.5 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.5 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.5 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.49 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.48 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.48 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.47 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.45 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.45 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.45 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.44 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.43 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.43 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.43 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.42 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.41 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.41 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.4 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.4 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.39 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.39 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.36 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.34 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.33 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.32 | |
| KOG4594 | 354 | consensus Sequence-specific single-stranded-DNA-bi | 99.31 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.31 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.3 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.3 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.27 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.27 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.26 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.26 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.25 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.25 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.23 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.23 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.22 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.21 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.2 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.19 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.18 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.17 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.15 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.15 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.15 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.14 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.13 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.1 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.09 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.02 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.01 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.01 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.0 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.99 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.98 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.98 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.98 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.96 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.92 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.91 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.88 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.87 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.87 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.86 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.84 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.83 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.82 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.81 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.81 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.81 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.8 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.8 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.76 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.74 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.71 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.64 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.64 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.62 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.61 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.61 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.6 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.6 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.59 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.59 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.58 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.55 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.55 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.55 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.52 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.49 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.49 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.47 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.46 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.45 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.44 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.39 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.35 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.34 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.34 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.33 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.33 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.32 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.28 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.28 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.26 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.26 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.25 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.21 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.21 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.21 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.19 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.18 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.18 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.16 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.14 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.13 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.1 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.1 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.08 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.05 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.99 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.97 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.95 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.89 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.87 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.86 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.85 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.85 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.84 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.84 | |
| PRK10115 | 686 | protease 2; Provisional | 97.81 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.77 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.76 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.76 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.75 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.74 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.74 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.65 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.61 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.56 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.54 | |
| PRK10115 | 686 | protease 2; Provisional | 97.52 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.46 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.42 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.4 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.39 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.35 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.35 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.33 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.28 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.27 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.25 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.24 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 97.24 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.2 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.2 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.19 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.15 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.13 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.1 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.06 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.04 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.0 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.99 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.99 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.93 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.92 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.9 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.79 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.78 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.74 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.74 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.74 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.73 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.67 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.65 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.62 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.61 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.58 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.57 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 96.55 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.52 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.48 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 96.41 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 96.38 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.38 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.35 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 96.32 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 96.21 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 96.12 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.05 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.89 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.89 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 95.85 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.85 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.85 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.82 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.82 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.78 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.67 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.63 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.59 | |
| PLN02153 | 341 | epithiospecifier protein | 95.52 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 95.39 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.38 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.36 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 95.21 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.2 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.12 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.09 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.05 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.05 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 94.99 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.98 | |
| PLN02193 | 470 | nitrile-specifier protein | 94.85 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 94.83 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 94.8 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.79 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.74 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 94.65 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.65 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.64 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 94.59 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.27 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.22 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 94.16 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 94.12 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 94.03 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.94 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.92 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.74 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.68 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 93.52 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 93.5 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 93.47 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 93.32 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.21 | |
| PLN02193 | 470 | nitrile-specifier protein | 93.14 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 93.05 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.99 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 92.92 | |
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 92.9 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 92.87 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 92.48 | |
| PLN02153 | 341 | epithiospecifier protein | 92.47 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 92.38 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 92.29 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.28 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 92.26 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 92.12 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 92.08 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 92.02 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 92.01 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 91.95 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 91.94 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 91.82 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 91.62 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 91.62 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 91.59 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 91.57 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 91.47 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 91.38 | |
| KOG2109 | 788 | consensus WD40 repeat protein [General function pr | 90.83 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 90.8 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 90.52 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.21 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 90.15 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 89.99 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 89.6 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 89.5 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 89.32 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 89.24 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 89.19 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=379.07 Aligned_cols=310 Identities=26% Similarity=0.447 Sum_probs=276.2
Q ss_pred ceEEEEcCCCcccc---CCCCeEEeCCCcchhhhcccccccCCccCceeeecccCCCCCCCCCCcccccccCccceeeeE
Q 002519 552 PLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 628 (913)
Q Consensus 552 ~~~~~s~dg~~~~~---~~~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~ 628 (913)
-++.|||+|.++++ +..++|||..+. ....+
T Consensus 119 l~~~fsp~g~~l~tGsGD~TvR~WD~~Te----------------------------------------------Tp~~t 152 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGSGDTTVRLWDLDTE----------------------------------------------TPLFT 152 (480)
T ss_pred EEEEecCCCceEEecCCCceEEeeccCCC----------------------------------------------Cccee
Confidence 36789999998877 335588887653 24567
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee-eEeccCCCCeEEEEECC-----CCCEEEEEeCCCeEEEE
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-TNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRVW 702 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~-~~l~~h~~~V~~l~fsp-----dg~~Lasgs~Dg~V~Iw 702 (913)
.++|...|.||+|+|||+.||+|+.||+|++||.++++.+ ..|.+|...|++|+|.| ..++||+++.||.|+||
T Consensus 153 ~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIW 232 (480)
T KOG0271|consen 153 CKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIW 232 (480)
T ss_pred ecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEE
Confidence 8899999999999999999999999999999999987765 67999999999999975 67799999999999999
Q ss_pred EcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc---eEEE-----------Eec
Q 002519 703 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMR-----------FQP 768 (913)
Q Consensus 703 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~-----------~s~ 768 (913)
|+.. +.++..+.+|...|+|++|-. ..+|++|+.|++|++|+...|++.+.++++. +.++ |.+
T Consensus 233 d~~~-~~~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 233 DTKL-GTCVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred EccC-ceEEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccc
Confidence 9987 789999999999999999974 4589999999999999999999988887753 3333 333
Q ss_pred CCC-------------------------EEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-
Q 002519 769 HLG-------------------------RYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED- 821 (913)
Q Consensus 769 ~~~-------------------------~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d- 821 (913)
.+. .+++++.|.++.+|+.... +++..+.+|..-|+.+.|+||+++|++++-|
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk 389 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK 389 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc
Confidence 333 4888999999999987665 5888899999999999999999999999999
Q ss_pred eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEE
Q 002519 822 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYV 900 (913)
Q Consensus 822 ~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~L 900 (913)
+|++||.+++ +.+..+.+|-..|+.++|+.|.++|++|+.|.++++||+++.++. .+.+|.+.|.++.|+|||..+
T Consensus 390 SVkLW~g~tG---k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 390 SVKLWDGRTG---KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred ceeeeeCCCc---chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCcee
Confidence 9999999988 788899999999999999999999999999999999999999987 888999999999999999999
Q ss_pred EEEeCCCcEEEeC
Q 002519 901 ASASHDKFVKLWK 913 (913)
Q Consensus 901 asgs~DG~I~IWd 913 (913)
++|+.|..++||.
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 9999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=363.44 Aligned_cols=288 Identities=23% Similarity=0.393 Sum_probs=262.6
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
.+-..+.+|.+.|.|+.|+|+|++||+|+.|.+|++||+.+....++.++|...|.||+|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 45556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCCeEEEEEcCC----CCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCC--CEEEEEE
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL--GRYLAAA 777 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~--~~ll~~~ 777 (913)
.+++....+.+.+|...|++++|.|- ..++|++++.||.|+|||+..+.++..+.++...+.+...| +.+++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS 265 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGS 265 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecC
Confidence 99988888999999999999999873 23478899999999999999999999998876655544443 6788888
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCCeEEEEEc-----------CCC-------------------------CEEEEEeCC
Q 002519 778 AENVVSILDAETQACRLSLQGHTKPIDSVCWD-----------PSG-------------------------ELLASVSED 821 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~s-----------pdg-------------------------~~l~s~s~d 821 (913)
.|++|++|+...+++..++++|...|+.++.+ |.+ +.+++|++|
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 99999999999999999999999999998876 223 359999999
Q ss_pred -eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 002519 822 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 899 (913)
Q Consensus 822 -~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~ 899 (913)
++.+|+-... .+++....+|...|+.+.|+||+++|++++.|..|++||.++|+.+ .+.+|-..|+.++|+.|.++
T Consensus 346 ~tlflW~p~~~--kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 346 FTLFLWNPFKS--KKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred ceEEEeccccc--ccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence 9999997533 3678888899999999999999999999999999999999999988 88899999999999999999
Q ss_pred EEEEeCCCcEEEeC
Q 002519 900 VASASHDKFVKLWK 913 (913)
Q Consensus 900 Lasgs~DG~I~IWd 913 (913)
|++|+.|.+++|||
T Consensus 424 lVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWD 437 (480)
T ss_pred EEEcCCCceEEEEE
Confidence 99999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=353.13 Aligned_cols=287 Identities=27% Similarity=0.443 Sum_probs=266.3
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC--CCEEEEEeCCCeE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTV 699 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~V 699 (913)
.......--+.+.+|..+.||.|++.||||+.+|.++||+..+...+.+|.+|...|.++.|+|. +..||||+.||+|
T Consensus 164 ~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 164 SLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred hhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCce
Confidence 33444445577899999999999999999999999999999999999999999999999999997 5689999999999
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEE
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 776 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~ 776 (913)
++|++++ ..++..+.+|...|..++|+|+|++| +|++.|.+-++||++++..+...++ ++.+++|.++|..+++|
T Consensus 244 klw~~~~-e~~l~~l~gH~~RVs~VafHPsG~~L-~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 244 KLWKLSQ-ETPLQDLEGHLARVSRVAFHPSGKFL-GTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred eeeccCC-CcchhhhhcchhhheeeeecCCCcee-eecccccchhhcccccchhhHhhcccccccceeEecCCCceeecc
Confidence 9999997 67889999999999999999998855 5999999999999999987766555 56789999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeC-
Q 002519 777 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP- 854 (913)
Q Consensus 777 ~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp- 854 (913)
+.|..-+|||+++++++..+.+|.+.|.+|.|+|+|..|++|+.| +++|||++.. .++..+..|.+-|+.+.|+|
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred CccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEeccc
Confidence 999999999999999999999999999999999999999999999 9999999876 56899999999999999998
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 855 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 855 ~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.|.+|++++.|++++||...+..++ .+.+|++.|.++++++|+.+|+|++.|.+|++|.
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 7889999999999999999999888 8899999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=321.88 Aligned_cols=291 Identities=20% Similarity=0.373 Sum_probs=263.7
Q ss_pred CccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002519 620 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 699 (913)
Q Consensus 620 ~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 699 (913)
...++..++|++|.++|+++.|++|.++|++++.||++.|||.-+...+..++-....|..++|+|.++++|+|+.|+..
T Consensus 42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 42 RIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred eeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC--C---ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEec-CC
Q 002519 700 RVWDADNP--G---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQP-HL 770 (913)
Q Consensus 700 ~Iwdl~~~--~---~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~-~~ 770 (913)
.||++.+. . ...+.+.+|.+.+.|+.|..|+ ++ ++++.|.++.+||++++..+..|.++ +..+.+.| ++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~i-lT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HI-LTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcCCC-ce-EecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence 99999853 1 3467789999999999999854 44 49999999999999999999999876 45677889 88
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEE
Q 002519 771 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS 849 (913)
Q Consensus 771 ~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~ 849 (913)
+.+++++.|+..++||++.+.++.+|.+|+..|++|+|.|+|.-|++|++| +.++||++...+. .+..-......|++
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~-a~ys~~~~~~gitS 278 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL-AVYSHDSIICGITS 278 (343)
T ss_pred CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE-eeeccCcccCCcee
Confidence 999999999999999999999999999999999999999999999999999 9999999986332 22333334567999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 850 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 850 l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
++|+..|++|++|..|..+.|||.-.++.+ .+.+|+..|.|+..+|||.-|++|+.|..|+||.
T Consensus 279 v~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999998888777 8899999999999999999999999999999994
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=308.01 Aligned_cols=285 Identities=24% Similarity=0.421 Sum_probs=261.0
Q ss_pred eeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 626 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 626 ~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
+..+.+|++.|+++.|+|+|.+||+|+.|..|.+|++. ..+....+++|++.|..+.|..|++.|++++.|++|+.||+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 44567999999999999999999999999999999965 56777889999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--eCCceEEEEecCCCEEEEEEcCCeE
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVV 782 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ll~~~~dg~I 782 (913)
++ ++.++.+++|...|++++-+.-|..++++++.|+++++||+++..+++++ +.....+.|.-.+..+++++-|+.|
T Consensus 120 ~t-G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 120 ET-GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDI 198 (338)
T ss_pred cc-ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCce
Confidence 99 88899999999999999977778889999999999999999999999998 5577889999999999999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC-CceEEEeecCCC----ceEEEEEeCCC
Q 002519 783 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-GECVHELSCNGN----KFHSCVFHPTY 856 (913)
Q Consensus 783 ~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~-~~~i~~~~~~~~----~i~~l~~sp~g 856 (913)
++||++..+..+++.+|.+.|+.+..+++|.++.+-+.| ++++||++.... ..|+..+.++.. ....|+|+|++
T Consensus 199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG 278 (338)
T ss_pred eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence 999999999999999999999999999999999999999 999999986543 345666666533 35678999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 857 PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 857 ~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
+.+-+|+.|..+++||.....++ .+.+|.+.|++++|+|...+|.+++.|++|++
T Consensus 279 ~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 99999999999999999986655 89999999999999999999999999999986
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=325.17 Aligned_cols=244 Identities=25% Similarity=0.420 Sum_probs=230.4
Q ss_pred eeeeEeecCCCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 624 KEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspd--g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
..+.+|++|++.|.++.|+|. +..||+|+.||+|++|++++...+..+.+|...|..++|+|+|++|+|+|.|.+-|+
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL 287 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence 456789999999999999996 679999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc---eEEEEecCCCEEEEEEc
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~s~~~~~ll~~~~ 778 (913)
||+++ +..+....||...|.+|+|++||. ++++|+.|..-+|||+++++++..+.+++ ..+.|+|+|-.+++|+.
T Consensus 288 WD~~t-k~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~ 365 (459)
T KOG0272|consen 288 WDLET-KSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS 365 (459)
T ss_pred ccccc-chhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC
Confidence 99998 666777889999999999999976 78899999999999999999999998764 57899999999999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC
Q 002519 779 ENVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 779 dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp-dg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g 856 (913)
|++++|||++...+++++.+|.+-|+.|+|+| .|.+|++++.| +++||.-++. .+++.+.+|+++|.+|.+++++
T Consensus 366 Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 366 DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDS 442 (459)
T ss_pred CCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCC
Confidence 99999999999999999999999999999999 78899999999 9999998766 8899999999999999999999
Q ss_pred CEEEEEEcCCeEEEEE
Q 002519 857 PSLLVIGCYQSLELWN 872 (913)
Q Consensus 857 ~~l~s~s~dg~I~iwd 872 (913)
.+|++++.|++|++|.
T Consensus 443 ~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 443 QAIATSSFDRTIKLWR 458 (459)
T ss_pred ceEEEeccCceeeecc
Confidence 9999999999999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=312.88 Aligned_cols=296 Identities=23% Similarity=0.373 Sum_probs=250.6
Q ss_pred ccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec---cCCCCeEEEEECCCCCEE
Q 002519 614 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRL 690 (913)
Q Consensus 614 ~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~---~h~~~V~~l~fspdg~~L 690 (913)
+..+.++.+||...+++.|..-|.|+.|+|||.++|+++.||+|.|||-.+++.+..|. +|.+.|.+|.|+||+..|
T Consensus 171 ~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~ 250 (603)
T KOG0318|consen 171 TVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF 250 (603)
T ss_pred eEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceE
Confidence 44556788899999999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCC------------------------------------------ceeEEeccCCCCeEEEEEcC
Q 002519 691 ATSSFDKTVRVWDADNPG------------------------------------------YSLRTFMGHSASVMSLDFHP 728 (913)
Q Consensus 691 asgs~Dg~V~Iwdl~~~~------------------------------------------~~~~~~~~h~~~V~sl~fsp 728 (913)
+|++.|.+++|||+.+.. ..+..+.+|...|+++..++
T Consensus 251 ~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~ 330 (603)
T KOG0318|consen 251 LTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP 330 (603)
T ss_pred EEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC
Confidence 999999999999997521 11334458999999999999
Q ss_pred CCCeEEEEEeCCCcEEEEEcCCCeee-------------------------------EEe--------------------
Q 002519 729 NKDDLICSCDGDGEIRYWSINNGSCT-------------------------------RVF-------------------- 757 (913)
Q Consensus 729 ~~~~ll~sgs~Dg~I~iwdl~~~~~~-------------------------------~~~-------------------- 757 (913)
+++++ ++|+.||.|.-||+.++..- +.+
T Consensus 331 d~~~i-~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~ 409 (603)
T KOG0318|consen 331 DGKTI-YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK 409 (603)
T ss_pred CCCEE-EeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce
Confidence 98655 59999999999998654311 000
Q ss_pred ----------------------e-----------CCceEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEecCCCCC
Q 002519 758 ----------------------K-----------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQGHTKP 802 (913)
Q Consensus 758 ----------------------~-----------~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~--~~~~l~~h~~~ 802 (913)
. -...+++++|++..+++++.|+.|+||.+.... ....+..|..+
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~ 489 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAA 489 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCC
Confidence 0 012346788999999999999999999998764 33456679999
Q ss_pred eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--
Q 002519 803 IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-- 879 (913)
Q Consensus 803 V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-- 879 (913)
|++++|+||+.||+++... .|.+||+.+... ....+..|..+|.+++|+|+..++++|+-|-.|.||+++.....
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ 567 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII 567 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheE
Confidence 9999999999999999988 999999987644 44556668999999999999999999999999999999765433
Q ss_pred EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 880 TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 880 ~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
...+|...|+.+.|-.+ ..|++.+.|-.|++|.
T Consensus 568 iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 568 IKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWN 600 (603)
T ss_pred eccccccCceeEEEecC-ceEEeccCcceeEEec
Confidence 55689999999999654 5788999999999995
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=291.53 Aligned_cols=284 Identities=21% Similarity=0.381 Sum_probs=244.9
Q ss_pred ceeeeEeecCCCCEEEEEEecC-CCEEEEEeCCCcEEEEECC-----CCceeeEeccCCCCeEEEEECCCCCEEEEEeCC
Q 002519 623 FKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTD-----TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 696 (913)
Q Consensus 623 ~~~~~~l~~H~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~-----~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D 696 (913)
+....++++|++.|+.++..+. ...|++++.|++|.+|++. .|..++.+++|+..|..+..++|+.+.++++.|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 4566789999999999999886 5689999999999999875 467789999999999999999999999999999
Q ss_pred CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC----CceEEEEecC--C
Q 002519 697 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPH--L 770 (913)
Q Consensus 697 g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~s~~--~ 770 (913)
+++|+||+.+ +...+.|.+|...|.+++|++|+..+ ++|+.|.+|++|++...-....... -+.+++|+|. .
T Consensus 85 ~~lrlWDl~~-g~~t~~f~GH~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 85 GTLRLWDLAT-GESTRRFVGHTKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred ceEEEEEecC-CcEEEEEEecCCceEEEEecCCCcee-ecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCC
Confidence 9999999998 68899999999999999999997755 5999999999999986544433333 3688999999 5
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEE
Q 002519 771 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS 849 (913)
Q Consensus 771 ~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~ 849 (913)
..++.++.|++|++||+++.+....+.+|.+.++.++++|||.++++|+.| .+.+||++.+ +++..+. +...|.+
T Consensus 163 p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~s 238 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVNS 238 (315)
T ss_pred cEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEee
Confidence 788889999999999999999999999999999999999999999999999 9999999877 4555544 4788999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-E----Eccc-----CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 850 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-T----LTAH-----EGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 850 l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~----~~~h-----~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|+|+|+.- .++...+..|+|||+.++.++ . +.+. .....+++|+.||..|++|-.|+.|++|.
T Consensus 239 l~fspnry-wL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 239 LCFSPNRY-WLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EEecCCce-eEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 99999865 445555567999999998876 1 1122 23456789999999999999999999994
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=305.17 Aligned_cols=288 Identities=23% Similarity=0.395 Sum_probs=264.2
Q ss_pred CccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002519 620 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 699 (913)
Q Consensus 620 ~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 699 (913)
...++..+.+.+|.+.|.|+++.|...+|++|+.|++|+|||+.++....++.+|...|..|++++-..||++++.|+.|
T Consensus 138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEE
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAA 776 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~ 776 (913)
+.||++. .+.++.+.||-..|.|++.+|.-+ +|++|+.|.++++||+++...+..+.++ +..+.+.+.+..++++
T Consensus 218 KCwDLe~-nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 218 KCWDLEY-NKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred EEEechh-hhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence 9999997 788999999999999999999865 5669999999999999999999998875 4567788889999999
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC
Q 002519 777 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 777 ~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g 856 (913)
+.|++|++||++.++...++..|...|.+++.+|....|++++.|.|+-|++..+ ..+..+.+|...|.+++...|+
T Consensus 296 S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~ 372 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG 372 (460)
T ss_pred cCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc
Confidence 9999999999999999999999999999999999999999999999999999766 5666688889999999988776
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEE---------cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 857 PSLLVIGCYQSLELWNMSENKTMTL---------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 857 ~~l~s~s~dg~I~iwd~~~~~~~~~---------~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
++++|+..|.|.+||.+++..... ...+..|.+.+|...|..|++|..|++|++|+
T Consensus 373 -v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 -VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred -eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 688899999999999999875521 12456799999999999999999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=328.30 Aligned_cols=286 Identities=29% Similarity=0.535 Sum_probs=255.2
Q ss_pred eeeeEeecC-CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 002519 624 KEANSVRAS-TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 700 (913)
Q Consensus 624 ~~~~~l~~H-~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~ 700 (913)
..+..+..| ...|.|+.|+++|++|++++.|+.|++|+..+.+ ....+.+|...|.+++|+|++++|++++.|++|+
T Consensus 149 ~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 149 SLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred eeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence 335555554 8999999999999999999999999999998777 7788899999999999999999999999999999
Q ss_pred EEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEEE
Q 002519 701 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~~ 777 (913)
|||+...+..++++++|...|++++|+|++ .++++|+.|++|+|||++++++++.+.++ +..++|.+++..+++++
T Consensus 229 iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS 307 (456)
T ss_pred EeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC
Confidence 999966678999999999999999999999 78889999999999999999999998764 56788999999999999
Q ss_pred cCCeEEEEECCCCe--EEEEecCCCCC--eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCc---eEE
Q 002519 778 AENVVSILDAETQA--CRLSLQGHTKP--IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK---FHS 849 (913)
Q Consensus 778 ~dg~I~i~D~~t~~--~~~~l~~h~~~--V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~---i~~ 849 (913)
.|+.|+|||+.++. ++..+.++... +++++|+|++++|++++.| .+++||++.+ .++..+..|... +.+
T Consensus 308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~~ 384 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIFS 384 (456)
T ss_pred CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEec
Confidence 99999999999998 66777776665 9999999999999999999 9999999877 556666666553 344
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEccc-CCCeEEEEEeCCCCEEEEEe--CCCcEEEeC
Q 002519 850 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAALAVSTETGYVASAS--HDKFVKLWK 913 (913)
Q Consensus 850 l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h-~~~V~~l~~spdg~~Lasgs--~DG~I~IWd 913 (913)
..+++.+.++++++.|+.|++||+.++..+ .+.+| ...|..+.|++...++++++ .|+.|++|+
T Consensus 385 ~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 385 PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 456789999999999999999999987766 78889 89999999999999999998 799999996
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=303.32 Aligned_cols=288 Identities=26% Similarity=0.502 Sum_probs=268.9
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
.+.+...+.+|...|+.+-|.|+-.++++++.|++|++||..+++.+..+++|.+.|.+|+|+..|++||+++.|-.+.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 55677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc---eEEEEecCCCEEEEEEc
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~s~~~~~ll~~~~ 778 (913)
||..+-..+++...+|...|.+++|-|.|+++ ++|+.|.+|+.|++.++-|+++|.++. ..++..-+|..+++++.
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~i-lS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHI-LSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCee-eecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 99987667888999999999999999998755 499999999999999999999998875 45667788888888888
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC---------------CCEEEEEeCC-eEEEEECCCCCCCceEEEeec
Q 002519 779 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS---------------GELLASVSED-SVRVWTVGSGSEGECVHELSC 842 (913)
Q Consensus 779 dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd---------------g~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~ 842 (913)
|.+|++|-+.++.+...+++|+.+|.+++|.|. +.++++++.| +|++||+.++ .|+.++.+
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~g 332 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVG 332 (406)
T ss_pred CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEec
Confidence 999999999999999999999999999999873 2489999999 9999999888 99999999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 843 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 843 ~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|.+.|..++|+|.|+||+++..|++|++||+..+.++ .+..|+..|++++|+.+..+++||+-|-.+++|.
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999988 7789999999999999999999999999999995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=280.48 Aligned_cols=266 Identities=22% Similarity=0.440 Sum_probs=238.7
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEeccCCCCeEEE
Q 002519 646 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSL 724 (913)
Q Consensus 646 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~-~~~~~~~h~~~V~sl 724 (913)
-+||++++|.+||+|...+|.+.+++....+.|..+.+.||++.||+++. -.||+||+++... ++.+|.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 48999999999999999999999999999999999999999999999985 4599999998554 799999999999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec-CCCC
Q 002519 725 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTK 801 (913)
Q Consensus 725 ~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~-~h~~ 801 (913)
.|..+|+. +++|++||+++|||++...+.+.|. ..++++..+|+-..|+++..+|.|++||+.+..+...+. ....
T Consensus 90 gF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeE-EEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 99999775 5599999999999999987776654 578899999999999999999999999999987666554 3456
Q ss_pred CeEEEEEcCCCCEEEEEeCC-eEEEEECCCC---CCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-
Q 002519 802 PIDSVCWDPSGELLASVSED-SVRVWTVGSG---SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN- 876 (913)
Q Consensus 802 ~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~---~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~- 876 (913)
.|.++...|||.+++.+... ..++|++-.. .....+..+..|...+..|.++|++++|++++.|.+++||+.++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 79999999999999988877 9999999664 345677888999999999999999999999999999999999987
Q ss_pred cE-EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 877 KT-MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 877 ~~-~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+. +.+.+|..+|++++||.||.||++|+.|+.+++|+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 22 27789999999999999999999999999999997
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=311.32 Aligned_cols=275 Identities=22% Similarity=0.444 Sum_probs=247.0
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 712 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 712 (913)
.-.|..|.|.|+|+.|++|+..|.+.||+..+......+..|...|+++.|++++.++++|+.+|.|++|+..- ..++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhH
Confidence 34799999999999999999999999999988888888889999999999999999999999999999999874 3345
Q ss_pred EeccC-CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002519 713 TFMGH-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAE 788 (913)
Q Consensus 713 ~~~~h-~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~~~dg~I~i~D~~ 788 (913)
.+..| ...|++++|+|++. .|++|++||+|+|||....+..+.+.++ +.++.|+|..+.+++++.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 55554 49999999999655 5669999999999999998887777764 6789999999999999999999999999
Q ss_pred CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC-CEEEEEEcCC
Q 002519 789 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQ 866 (913)
Q Consensus 789 t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg 866 (913)
++.|+.++.+|...|..+.|.+++++|++++.| .+++||+++. +.+..+.+|...++++.|+|-. ..|.+|+.||
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 999999999999999999999999999999999 9999999855 6677888899999999999955 5677888999
Q ss_pred eEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 867 SLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 867 ~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.|..|.+...+.+ .-.+|+..|++++|+|-|.+|++|+.|.++++|.
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999855555 4568999999999999999999999999999993
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=294.83 Aligned_cols=282 Identities=30% Similarity=0.566 Sum_probs=251.2
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 706 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 706 (913)
..+++|.+.|++++|++++++|++++.||.|++|++.+++....+..|...|.++.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45778999999999999999999999999999999999888889999999999999999999999999999999999987
Q ss_pred CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEEEcCCeEE
Q 002519 707 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVS 783 (913)
Q Consensus 707 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~~~dg~I~ 783 (913)
...+..+..|...|.++.|++++ .++++++.|+.|++||+++++....+.. .+..+.|++++..+++++.++.|+
T Consensus 83 -~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 -GECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred -ccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 56677788899999999999984 4676777799999999998887777653 467889999977666666699999
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEE
Q 002519 784 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 862 (913)
Q Consensus 784 i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~ 862 (913)
+||+++++.+..+..|...|.+++|+++++.|++++.+ .|++||++.+ ..+..+..+...+.++.|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 99999999898999999999999999999888888877 9999999865 5566666777899999999998888887
Q ss_pred EcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 863 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 863 s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+.++.|++||+.+++.. .+..|...|.+++|++++++|++++.||.|+|||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77999999999987766 6678999999999999999999999999999997
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=298.00 Aligned_cols=281 Identities=24% Similarity=0.472 Sum_probs=245.3
Q ss_pred eeeEeecCCCCEEEEEEecCCC-EEEEEeCCCcEEEEECCC--Cc--eeeEec------c----CCCCeEEEEECCCCCE
Q 002519 625 EANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDT--LK--SKTNLE------E----HSSLITDVRFSPSMPR 689 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~--~~--~~~~l~------~----h~~~V~~l~fspdg~~ 689 (913)
.++.++ |+..|.+++|+|-.. +|++|+.|-+.++|++.. .. ....|+ + ....|++|+|+.+|..
T Consensus 171 ~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~ 249 (524)
T KOG0273|consen 171 KAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL 249 (524)
T ss_pred ceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence 334455 999999999999665 999999999999999874 11 111111 1 2467999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc---eEEEE
Q 002519 690 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRF 766 (913)
Q Consensus 690 Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~ 766 (913)
||+|+.||.+|||+.. +..+.++..|+++|.+|.|+.+|.+++ +++.|+++.+||..++.....|..+. ..+.|
T Consensus 250 LatG~~~G~~riw~~~--G~l~~tl~~HkgPI~slKWnk~G~yil-S~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW 326 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKD--GNLISTLGQHKGPIFSLKWNKKGTYIL-SGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW 326 (524)
T ss_pred EEEeecCcEEEEEecC--chhhhhhhccCCceEEEEEcCCCCEEE-eccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence 9999999999999997 577889999999999999999988665 99999999999999998877765433 34667
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCC
Q 002519 767 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 845 (913)
Q Consensus 767 s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~ 845 (913)
..+ ..|++++.|+.|+||.+....++.++.+|.+.|.++.|+|.|.+|+++++| +++||.+... .+++.+..|..
T Consensus 327 ~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hsk 402 (524)
T KOG0273|consen 327 QSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSK 402 (524)
T ss_pred ecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhcc
Confidence 654 678888999999999999999999999999999999999999999999999 9999998655 78888888999
Q ss_pred ceEEEEEeCCC---------CEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 846 KFHSCVFHPTY---------PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 846 ~i~~l~~sp~g---------~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.|..+.|+|.| ..+++++.|++|++||+..+.++ .+..|..+|++++|+|+|++||+|+.||.|+||+
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 99999999965 46999999999999999999988 7789999999999999999999999999999995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=272.15 Aligned_cols=267 Identities=22% Similarity=0.338 Sum_probs=235.0
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 699 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 699 (913)
+-++.+++....+.|..+.+.||+++||+++. -.||+||+.+++ .+.+|++|...|++|.|..+|+.+++|++||+|
T Consensus 29 tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTV 107 (311)
T ss_pred cCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceE
Confidence 44788889888899999999999999999985 579999999654 689999999999999999999999999999999
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----CCceEEEEecCCCEEEE
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLA 775 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~s~~~~~ll~ 775 (913)
+|||++. -.+-+.| .|..+|++|..+|+-..|| +|..+|.|++||+.+..+...+- ..+.++.+.+++..+++
T Consensus 108 kIWdlR~-~~~qR~~-~~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a 184 (311)
T KOG0315|consen 108 KIWDLRS-LSCQRNY-QHNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAA 184 (311)
T ss_pred EEEeccC-cccchhc-cCCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEE
Confidence 9999997 4444444 4789999999999988777 99999999999999887665542 35677889999999999
Q ss_pred EEcCCeEEEEECCCC------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceE
Q 002519 776 AAAENVVSILDAETQ------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 848 (913)
Q Consensus 776 ~~~dg~I~i~D~~t~------~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~ 848 (913)
+...|..++|++-+. +++..+..|...+..+.++||+++|++++.| +++||+.... .+....+.+|...+.
T Consensus 185 ~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvW 262 (311)
T KOG0315|consen 185 ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVW 262 (311)
T ss_pred ecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEE
Confidence 999999999998653 5677888999999999999999999999999 9999999765 566677888999999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 002519 849 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 894 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 894 (913)
.|+|+.|+.||++++.|+.+++||+..++.+ ...+|.....|++..
T Consensus 263 dc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 263 DCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9999999999999999999999999999877 677888877777653
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=308.61 Aligned_cols=290 Identities=18% Similarity=0.353 Sum_probs=254.2
Q ss_pred cceeeeEeecCCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCC-CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002519 622 SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 699 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 699 (913)
.-+.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|++++.|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 4567888999999999999999 899999999999999999985 89999999999999999999999999999999999
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEE
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 776 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~ 776 (913)
++||+++ +.++..+. ....++|+.|+|++.++|++|+.|+.|+.||+++++.+..+.. .+..+.|.+++.+++++
T Consensus 283 KlwDtET-G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 283 KLWDTET-GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeecccc-ceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999 66776665 4567899999999988888999999999999999998877654 56778999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCC--CceEEEEE
Q 002519 777 AAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG--NKFHSCVF 852 (913)
Q Consensus 777 ~~dg~I~i~D~~t~~~~~~l~~-h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~--~~i~~l~~ 852 (913)
+.|+.|+||+.+....+..+.. +.....+|..+|+++++++-+.| .|.+|.+...-.....+.+++|. +.-..|.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 9999999999998866554432 33456788999999999999999 99999986554444445555553 44567889
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCC-CEEEEEeCCCcEEEeC
Q 002519 853 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 913 (913)
Q Consensus 853 sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg-~~Lasgs~DG~I~IWd 913 (913)
||||++|++|..||.+.+||.++.+++ .+.+|+..+..+.|+|.. ..||+|+.||.|+|||
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999888 888999999999999954 4799999999999997
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=296.79 Aligned_cols=286 Identities=19% Similarity=0.319 Sum_probs=241.3
Q ss_pred ccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC---CceeeEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002519 621 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 697 (913)
Q Consensus 621 ~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 697 (913)
++.++...+..|++.|+-+.||++|++||+++.|.+..||++.. .+.++++.+|..+|..|.|+||.++|++|+.|.
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence 46778888999999999999999999999999999999998864 455888999999999999999999999999999
Q ss_pred eEEEEEcCCCCceeEEe-ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----CCceEEEEecCCCE
Q 002519 698 TVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGR 772 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~-~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~s~~~~~ 772 (913)
.+++||+.+ +.....+ .++...+.+++|.||+.+++ +|+.|+.|..||+.... ....+ ..+.+++..++|.+
T Consensus 292 ~~~lwDv~t-gd~~~~y~~~~~~S~~sc~W~pDg~~~V-~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 292 VLSLWDVDT-GDLRHLYPSGLGFSVSSCAWCPDGFRFV-TGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred heeeccCCc-chhhhhcccCcCCCcceeEEccCCceeE-ecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcE
Confidence 999999998 4444444 34578899999999998765 99999999999998543 33322 24678899999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCc--eEE
Q 002519 773 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHS 849 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~--i~~ 849 (913)
+++.+.|..|++|+.++...+..+. ...+|++++++.+++++++.-.+ .|.+||+... ..+..+.+|... +..
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFIIR 444 (519)
T ss_pred EEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEEE
Confidence 9999999999999998876665443 45789999999999999988888 9999999743 556666665433 333
Q ss_pred EEEe-CCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCC-CEEEEEeCCCcEEEeC
Q 002519 850 CVFH-PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 913 (913)
Q Consensus 850 l~~s-p~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg-~~Lasgs~DG~I~IWd 913 (913)
-||- .+..++++|+.|+.|+||+..+++++ .+.+|...|+|++|+|.. .++|+||+||+||||.
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 3443 35589999999999999999999988 899999999999999955 5799999999999994
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=270.05 Aligned_cols=281 Identities=22% Similarity=0.424 Sum_probs=239.2
Q ss_pred ceeeeEeecCCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCC---CceeeEe-ccCCCCeEEEEECCCCCEEEEEeCCC
Q 002519 623 FKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDT---LKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDK 697 (913)
Q Consensus 623 ~~~~~~l~~H~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~---~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg 697 (913)
+.++..+.+|+++|..++|+|- |..||+|+.|+.|+||+... ..++..+ .+|+..|++|+|+|.|++|+++|+|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4577889999999999999998 89999999999999999984 4455444 36999999999999999999999999
Q ss_pred eEEEEEcCCC-CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC---eeeEEeeCC---ceEEEEecCC
Q 002519 698 TVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG---SCTRVFKGG---TAQMRFQPHL 770 (913)
Q Consensus 698 ~V~Iwdl~~~-~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~---~~~~~~~~~---~~~v~~s~~~ 770 (913)
++.||.-..+ -+++.++.||...|.|++|+++|. +|++|+.|..|-||.+..+ .|...+..+ +..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 9999987642 367889999999999999999976 6779999999999999854 466666665 4668899999
Q ss_pred CEEEEEEcCCeEEEEECC---CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCc
Q 002519 771 GRYLAAAAENVVSILDAE---TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 846 (913)
Q Consensus 771 ~~ll~~~~dg~I~i~D~~---t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~ 846 (913)
..|++++.|++|++|+.. ...++.++.+|...|.+++|++.|..|+++++| +|+||...+. .-..|...
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~ 235 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA 235 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence 999999999999999766 347899999999999999999999999999999 9999986532 11234677
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCc---E---E--EEcccCCCeEEEEEeCC-CCEEEEEeCCCcEEEeC
Q 002519 847 FHSCVFHPTYPSLLVIGCYQSLELWNMSENK---T---M--TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 913 (913)
Q Consensus 847 i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~---~---~--~~~~h~~~V~~l~~spd-g~~Lasgs~DG~I~IWd 913 (913)
++.+.|. ...|++++.|+.|+||...... . + ....|+..|+++.|.|. .++|++|++||.|++|.
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 8889998 4579999999999999776431 1 1 34579999999999994 67999999999999995
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=289.99 Aligned_cols=274 Identities=23% Similarity=0.379 Sum_probs=251.2
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 712 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 712 (913)
+..|++++|+.+|.+||+|+.||.++||+. ++..+.+|..|+++|.+|+|+.+|.+|++++.|+++.|||..+ +....
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~-g~~~q 312 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-GTVKQ 312 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC-ceEEE
Confidence 467999999999999999999999999996 5678999999999999999999999999999999999999987 66777
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEEEcCCeEEEEECCC
Q 002519 713 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAET 789 (913)
Q Consensus 713 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t 789 (913)
.|.-|..+-.+|.|-.+. -|++++.|+.|+++.+.....+.++.+ .+..+.|.|.+..|++++.|++++||....
T Consensus 313 ~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred eeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 777788887889998654 466999999999999999888888766 467789999999999999999999999999
Q ss_pred CeEEEEecCCCCCeEEEEEcCCC---------CEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEE
Q 002519 790 QACRLSLQGHTKPIDSVCWDPSG---------ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 859 (913)
Q Consensus 790 ~~~~~~l~~h~~~V~sl~~spdg---------~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l 859 (913)
..+...+.+|...|..+.|+|+| ..+++++.| +|++||+..+ .+++.+..|..+|++++|+|+|+++
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEE
Confidence 99999999999999999999964 468888888 9999999877 8999999999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 860 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 860 ~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
++|+.||.|.+|++.+++++......+.|..++|+.+|.+|+.+-.||.|++-|
T Consensus 468 AsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 468 ASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 999999999999999999998888888899999999999999999999998754
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=300.02 Aligned_cols=292 Identities=23% Similarity=0.380 Sum_probs=255.3
Q ss_pred cccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCC-CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC
Q 002519 617 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 695 (913)
Q Consensus 617 ~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~D-g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~ 695 (913)
+..-..|..++.+.-...+|..++|+..|.+||.|+.. |.+-||++.+...+....+|...|+|++++|||.+||||++
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e 370 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE 370 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC
Confidence 33445678888888888999999999999999998865 89999999998889999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC----ceEEEEecCCC
Q 002519 696 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLG 771 (913)
Q Consensus 696 Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~s~~~~ 771 (913)
||+|+|||..+ +.|+.+|..|+..|+.+.|+..+..++ +.+-||+|+.||+...++.++|..+ ..+++..|.|.
T Consensus 371 DgKVKvWn~~S-gfC~vTFteHts~Vt~v~f~~~g~~ll-ssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe 448 (893)
T KOG0291|consen 371 DGKVKVWNTQS-GFCFVTFTEHTSGVTAVQFTARGNVLL-SSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE 448 (893)
T ss_pred CCcEEEEeccC-ceEEEEeccCCCceEEEEEEecCCEEE-EeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC
Confidence 99999999998 899999999999999999999977554 9999999999999999999998764 35678888888
Q ss_pred EEEEEEcCC-eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEE
Q 002519 772 RYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS 849 (913)
Q Consensus 772 ~ll~~~~dg-~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~ 849 (913)
.+++|+.|. .|.+|++.+|+.+-.+.+|+++|.+++|+|++..|++++.| +|++||+-... ..+.++. ....+..
T Consensus 449 lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl~-i~sdvl~ 525 (893)
T KOG0291|consen 449 LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETLE-IRSDVLA 525 (893)
T ss_pred EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeEe-eccceeE
Confidence 888888876 79999999999999999999999999999999999999999 99999995431 2233332 3667899
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc--------------------ccCCCeEEEEEeCCCCEEEEEeCCCc
Q 002519 850 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT--------------------AHEGLIAALAVSTETGYVASASHDKF 908 (913)
Q Consensus 850 l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~--------------------~h~~~V~~l~~spdg~~Lasgs~DG~ 908 (913)
++|+|+|+.|++++-||.|.+||+..+..+ .+. .....++.+++++||++|++||....
T Consensus 526 vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~ 605 (893)
T KOG0291|consen 526 VSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNS 605 (893)
T ss_pred EEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCccc
Confidence 999999999999999999999999876543 111 12357899999999999999999999
Q ss_pred EEEeC
Q 002519 909 VKLWK 913 (913)
Q Consensus 909 I~IWd 913 (913)
|+||+
T Consensus 606 iCiY~ 610 (893)
T KOG0291|consen 606 ICIYD 610 (893)
T ss_pred EEEEE
Confidence 99985
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=274.27 Aligned_cols=245 Identities=20% Similarity=0.335 Sum_probs=214.9
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
..++.++||...|..+..++||.+.++++.|+++++||+.+++....|.+|...|.+++|++|.+.|++|+.|++|++|+
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn 133 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN 133 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeee
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEecc--CCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEEE
Q 002519 704 ADNPGYSLRTFMG--HSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 704 l~~~~~~~~~~~~--h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~~ 777 (913)
+.. .+..+... +.+.|.|++|+|+. +-+|++++.|++|++||+++.+....|.++ .+.+.++|||..++.|+
T Consensus 134 t~g--~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg 211 (315)
T KOG0279|consen 134 TLG--VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG 211 (315)
T ss_pred ecc--cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC
Confidence 985 33333333 37899999999985 557789999999999999999988888765 46788999999999999
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeec---------CCCceE
Q 002519 778 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC---------NGNKFH 848 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~---------~~~~i~ 848 (913)
.||.+.+||++.++.++.+. |...|.+++|+|+..+|+.+....|+|||+.+.. ++.+++. ......
T Consensus 212 kdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~---~v~~l~~d~~g~s~~~~~~~cl 287 (315)
T KOG0279|consen 212 KDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKA---VVEELKLDGIGPSSKAGDPICL 287 (315)
T ss_pred CCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchh---hhhhccccccccccccCCcEEE
Confidence 99999999999999988776 7889999999999888887777799999998763 3333221 133467
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECC
Q 002519 849 SCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
+++|+++|..|++|..|+.|++|.+.
T Consensus 288 slaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 288 SLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEcCCCcEEEeeecCCcEEEEEee
Confidence 78999999999999999999999874
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=302.15 Aligned_cols=289 Identities=21% Similarity=0.305 Sum_probs=261.5
Q ss_pred ccceeeeEeecCCCCEEEEEEe-cCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002519 621 FSFKEANSVRASTSKVICCHFS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 699 (913)
Q Consensus 621 ~~~~~~~~l~~H~~~V~~l~fs-pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 699 (913)
-+++..+.+-|..+.|.+++|- |+..+||+++..+.+++|++.+..+. .+.+|+..|.++....+|-+|+||+.|++|
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~sv 389 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSV 389 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceE
Confidence 3567778888999999999985 57789999999999999999887766 899999999999966677899999999999
Q ss_pred EEEEcCCCC---ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee------------EEeeCCceEE
Q 002519 700 RVWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT------------RVFKGGTAQM 764 (913)
Q Consensus 700 ~Iwdl~~~~---~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~------------~~~~~~~~~v 764 (913)
++|.++++. .++....+|...|.+++++..+..+|++++.|++|++|++...+.. +.+...++++
T Consensus 390 ilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 390 ILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV 469 (775)
T ss_pred EEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence 999985422 3455677999999999999988999999999999999999873211 1123467899
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecC
Q 002519 765 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 843 (913)
Q Consensus 765 ~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~ 843 (913)
+++|++..+++++.|.+.+||+++......++.+|+..|.++.|++...++++++.| +|+||.+.+. .|+.++.+|
T Consensus 470 aia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH 546 (775)
T KOG0319|consen 470 AIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGH 546 (775)
T ss_pred EecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCc
Confidence 999999999999999999999999999999999999999999999999999999999 9999999766 999999999
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 844 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 844 ~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
...|..+.|-.+++.|++++.||.|+||++++++++ ++..|.+.|++++.++...+++||+.||.|.+|+
T Consensus 547 ~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 547 TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999999999999998 8999999999999999999999999999999996
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=306.33 Aligned_cols=274 Identities=24% Similarity=0.414 Sum_probs=239.8
Q ss_pred eeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-------------------------------ceeeEecc
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-------------------------------KSKTNLEE 673 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-------------------------------~~~~~l~~ 673 (913)
+.-++..-...|+|+.|++|+++||.|..|..|++|.+... ...+++.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 33445555678999999999999999999999999987631 12345779
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002519 674 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 753 (913)
Q Consensus 674 h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~ 753 (913)
|.++|..+.|+|+.++|++||.|++||+|.+++ ..++..++||..+|+++.|+|.| ++|+|++.|++-++|.......
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeeccc-ceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc
Confidence 999999999999999999999999999999998 77888999999999999999985 5777999999999999999888
Q ss_pred eEEeeCC---ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 002519 754 TRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 829 (913)
Q Consensus 754 ~~~~~~~---~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~ 829 (913)
.+.|.++ +.++.|+|+..++++|+.|.+|++||+.++..++.|.||..+|++++|+|+|++|++|++| .|+|||+.
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 8888765 5678999999999999999999999999999999999999999999999999999999999 99999998
Q ss_pred CCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-------------------------EEccc
Q 002519 830 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-------------------------TLTAH 884 (913)
Q Consensus 830 ~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-------------------------~~~~h 884 (913)
++ ..+..+.+|.+.|.++.|+.+|..|++++.|++|++||+..-... .+..-
T Consensus 608 ~~---~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK 684 (707)
T KOG0263|consen 608 NG---SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTK 684 (707)
T ss_pred CC---cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeec
Confidence 87 677888889999999999999999999999999999998542211 33344
Q ss_pred CCCeEEEEEeCCCCEEEEE
Q 002519 885 EGLIAALAVSTETGYVASA 903 (913)
Q Consensus 885 ~~~V~~l~~spdg~~Lasg 903 (913)
..+|.++.|...+..|+.|
T Consensus 685 ~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 685 NTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred CceEEEEEEeccceeEEec
Confidence 5578888888776555554
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=273.08 Aligned_cols=297 Identities=19% Similarity=0.262 Sum_probs=256.9
Q ss_pred CCCCCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC
Q 002519 607 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 686 (913)
Q Consensus 607 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspd 686 (913)
++|....+|+...+ .....+.+|++.|+|+.||.||.+||||+.+|.|+||+..++.....+......|.-++|+|.
T Consensus 83 GgDD~AflW~~~~g---e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~ 159 (399)
T KOG0296|consen 83 GGDDLAFLWDISTG---EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPR 159 (399)
T ss_pred CCCceEEEEEccCC---cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccc
Confidence 34444555666555 367788999999999999999999999999999999999999999998877788999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC----Cce
Q 002519 687 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTA 762 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~ 762 (913)
+..|+.|+.||.|.+|.+.+ +...+.+.||..++++=+|.|+|++++ ++..||+|++||+.++..+..+.. ...
T Consensus 160 a~illAG~~DGsvWmw~ip~-~~~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~ 237 (399)
T KOG0296|consen 160 AHILLAGSTDGSVWMWQIPS-QALCKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKITQAEGLELP 237 (399)
T ss_pred ccEEEeecCCCcEEEEECCC-cceeeEecCCCCCcccccccCCCceEE-EEecCceEEEEecCCCceeEEecccccCcCC
Confidence 99999999999999999998 577889999999999999999988766 999999999999999998887762 356
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec--------CCCCCeEEEEEcC---CCCEEEEEeCC-eEEEEECCC
Q 002519 763 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--------GHTKPIDSVCWDP---SGELLASVSED-SVRVWTVGS 830 (913)
Q Consensus 763 ~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--------~h~~~V~sl~~sp---dg~~l~s~s~d-~I~vwdl~~ 830 (913)
++.+...+..++.+..++.+++....+++.+.... .++..+.||.+.| .-.+.|+|+-| +|.|||+..
T Consensus 238 ~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~ 317 (399)
T KOG0296|consen 238 CISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA 317 (399)
T ss_pred ccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc
Confidence 67788888888889999999999999998888776 3445555555555 55688999999 999999976
Q ss_pred CCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 002519 831 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFV 909 (913)
Q Consensus 831 ~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I 909 (913)
. .++..-.|...|..+.|-+ ..+|++++.+|.|++||.++|.++ .+.+|...|.+++++|+.++|+|+|.|++.
T Consensus 318 ~----~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a 392 (399)
T KOG0296|consen 318 S----TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTA 392 (399)
T ss_pred c----hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeE
Confidence 4 2333445677899999998 789999999999999999999988 899999999999999999999999999999
Q ss_pred EEeC
Q 002519 910 KLWK 913 (913)
Q Consensus 910 ~IWd 913 (913)
+||+
T Consensus 393 ~VF~ 396 (399)
T KOG0296|consen 393 LVFE 396 (399)
T ss_pred EEEe
Confidence 9985
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=303.80 Aligned_cols=263 Identities=28% Similarity=0.468 Sum_probs=221.6
Q ss_pred ceEEEEcCCCcccc---CCCCeEEeCCCcchhhhcccccccCCccCceeeecccCCCCCCCCCCcccccccCccceeeeE
Q 002519 552 PLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 628 (913)
Q Consensus 552 ~~~~~s~dg~~~~~---~~~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~ 628 (913)
.+..|++|+..++. ++.+++|.....+++..-+ ..++..-++...|......|.... ...++
T Consensus 382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~------------~~~l~~~d~~sad~~~~~~D~~~~---~~~~~ 446 (707)
T KOG0263|consen 382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKD------------ASDLSNIDTESADVDVDMLDDDSS---GTSRT 446 (707)
T ss_pred eeEeecCCcchhhccccccEEEEEecchhhhccccc------------hhhhccccccccchhhhhccccCC---ceeEE
Confidence 35667778775555 5677999998654332111 012222222222222222222222 34455
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 708 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 708 (913)
+.+|.++|+.+.|+|+.++|++++.|++||+|.+.+..++..+++|..+|+++.|+|-|-|+||+|.|++.++|..+. .
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~ 525 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-N 525 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEEEcCCeEEEE
Q 002519 709 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSIL 785 (913)
Q Consensus 709 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~~~dg~I~i~ 785 (913)
.+++.+.+|-+.|.|+.|+|+.. ++++|+.|.+||+||+.+|..++.|.++ +.+++|+|+|.++++++.|+.|.||
T Consensus 526 ~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iW 604 (707)
T KOG0263|consen 526 KPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIW 604 (707)
T ss_pred CchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEE
Confidence 89999999999999999999965 6679999999999999999999999875 5778999999999999999999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002519 786 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 831 (913)
Q Consensus 786 D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~ 831 (913)
|+.+++.+..+.+|++.|.++.|+.+|.+||+++.| +|++||+...
T Consensus 605 Dl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 605 DLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999999999999999999 9999999653
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=279.30 Aligned_cols=356 Identities=19% Similarity=0.336 Sum_probs=282.0
Q ss_pred cceEEEEcCCCcccc---CCCCeEEeCCCcchhhhcccc-----cccCCccCceeeecccCCCCCCCCCCcccccccCcc
Q 002519 551 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRL-----VEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFS 622 (913)
Q Consensus 551 ~~~~~~s~dg~~~~~---~~~~~vWd~~~g~~~~~~~~~-----~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~ 622 (913)
.....|||.|-|+++ .+.++|||....+...+-+.- +.+.+++..-.....- ..+++..++.+-+..+
T Consensus 62 vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~av--GEGrerfg~~F~~DSG-- 137 (603)
T KOG0318|consen 62 VTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAV--GEGRERFGHVFLWDSG-- 137 (603)
T ss_pred eEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEE--ecCccceeEEEEecCC--
Confidence 457889999998887 567799999774332222111 1122222222222111 1122223333333333
Q ss_pred ceeeeEeecCCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 623 FKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 623 ~~~~~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
..+..+.+|...|.+|+|-|.. -+++||+.|++|.+|+-...+...+++.|...|.|++|+|||+++++++.||+|.|
T Consensus 138 -~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~i 216 (603)
T KOG0318|consen 138 -NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYI 216 (603)
T ss_pred -CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEE
Confidence 4567789999999999999865 48999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceeEEec---cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCce----EEEEecCCCEEE
Q 002519 702 WDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA----QMRFQPHLGRYL 774 (913)
Q Consensus 702 wdl~~~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~----~v~~s~~~~~ll 774 (913)
||=.+ ++.+..+. +|.+.|.+|.|+||+..++ +++.|.+++|||+.+.++++++.-+.. .+-+...+..|+
T Consensus 217 yDGkt-ge~vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lI 294 (603)
T KOG0318|consen 217 YDGKT-GEKVGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLI 294 (603)
T ss_pred EcCCC-ccEEEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEE
Confidence 99998 67777777 8999999999999988766 999999999999999999998865433 222233378999
Q ss_pred EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCce-----------------
Q 002519 775 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC----------------- 836 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~----------------- 836 (913)
+.+.+|.|.+++......+..+.+|...|+++..++++++|++|+.| .|.-||+.++...+.
T Consensus 295 tVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~ 374 (603)
T KOG0318|consen 295 TVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES 374 (603)
T ss_pred EEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCC
Confidence 99999999999999999999999999999999999999999999999 999999754310000
Q ss_pred --------------------------------------------------------------------------------
Q 002519 837 -------------------------------------------------------------------------------- 836 (913)
Q Consensus 837 -------------------------------------------------------------------------------- 836 (913)
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~ 454 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD 454 (603)
T ss_pred CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC
Confidence
Q ss_pred ------------E-------------EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeE
Q 002519 837 ------------V-------------HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIA 889 (913)
Q Consensus 837 ------------i-------------~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~ 889 (913)
+ .....|..+|++++|+||+.+|+++...+.|.+||+.+.+.. .+.-|...|.
T Consensus 455 ~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~ 534 (603)
T KOG0318|consen 455 GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKIN 534 (603)
T ss_pred CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEE
Confidence 0 011234567888999999999999999999999999888775 5556999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 890 ALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 890 ~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|++|+|++.+||||+-|-+|.||+
T Consensus 535 ~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 535 CVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EEEeCCCceEEEeccccceEEEEE
Confidence 999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-31 Score=263.11 Aligned_cols=241 Identities=24% Similarity=0.439 Sum_probs=217.3
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC------ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 700 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~ 700 (913)
..+.-....|..++|+|.|+++|+|+-|+...||++.+. ...+.+.+|.+.+.|+.|-+ ...|+|+|.|.++.
T Consensus 91 haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCa 169 (343)
T KOG0286|consen 91 HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCA 169 (343)
T ss_pred eEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEE
Confidence 344455678999999999999999999999999999854 45677999999999999987 55899999999999
Q ss_pred EEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEEE
Q 002519 701 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~~ 777 (913)
+||+++ +..+..|.+|.+.|.+|++.|...+.|++|+-|+..++||++.+.++..|.++ ++.++|.|++..|++++
T Consensus 170 lWDie~-g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 170 LWDIET-GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS 248 (343)
T ss_pred EEEccc-ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC
Confidence 999998 88899999999999999999955556779999999999999999999999875 67899999999999999
Q ss_pred cCCeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeC
Q 002519 778 AENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 854 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~~--h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp 854 (913)
.|++.++||++....+..+.. -...|++++|+..|++|++|..| ++.|||.-.+ +.+..+.+|++.|+++..+|
T Consensus 249 DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 249 DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGVSP 325 (343)
T ss_pred CCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEECC
Confidence 999999999999887777763 34579999999999999999999 9999999766 77888889999999999999
Q ss_pred CCCEEEEEEcCCeEEEEE
Q 002519 855 TYPSLLVIGCYQSLELWN 872 (913)
Q Consensus 855 ~g~~l~s~s~dg~I~iwd 872 (913)
||..+++|+.|..|+||.
T Consensus 326 DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 326 DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCcEEEecchhHheeecC
Confidence 999999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=297.73 Aligned_cols=349 Identities=21% Similarity=0.353 Sum_probs=265.2
Q ss_pred EEEEcCCCccccCC--CCeEEeCCCcchhhhcccccccCCccCceeee-cccCC----CCCCCCCCcccccccCccceee
Q 002519 554 MMFGTDGAGTLTSP--SNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDD----TDPRDAGGRGMDVSQGFSFKEA 626 (913)
Q Consensus 554 ~~~s~dg~~~~~~~--~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~-~~~d~----~~~~d~~~~~~~~~~~~~~~~~ 626 (913)
+.++++|..+++.. .+.+-|+.++... +. ....+ .++.+..+ +.+|. ...+....+.|.+..+ +.+
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~--l~-s~~~e-d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tg---k~i 97 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIA--LP-SGSNE-DEDEITALALTPDEEVLVTASRSQLLRVWSLPTG---KLI 97 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCcee--cc-cCCcc-chhhhheeeecCCccEEEEeeccceEEEEEcccc---hHh
Confidence 78899999888743 3566788887652 11 11111 11122222 22322 1223334455655555 778
Q ss_pred eEeec-CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEE
Q 002519 627 NSVRA-STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWD 703 (913)
Q Consensus 627 ~~l~~-H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwd 703 (913)
+.++. |+++|..++|+|.|.+|++|+.|+.|+|||+..+.+...|++|.+.|.++.|+|+-. .|++|..|++|++||
T Consensus 98 rswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwn 177 (775)
T KOG0319|consen 98 RSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWN 177 (775)
T ss_pred HhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEE
Confidence 88887 999999999999999999999999999999999999999999999999999999865 589999999999999
Q ss_pred cCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--------------------------
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------------------------- 757 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-------------------------- 757 (913)
+.+...++.++..|.+.|+++.|.+|+..++ +++.|..|.+||+...++.++.
T Consensus 178 l~~~~tcl~~~~~H~S~vtsL~~~~d~~~~l-s~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta 256 (775)
T KOG0319|consen 178 LNDKRTCLHTMILHKSAVTSLAFSEDSLELL-SVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITA 256 (775)
T ss_pred cccCchHHHHHHhhhhheeeeeeccCCceEE-EeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEe
Confidence 9975667888899999999999999977666 8888999999997533211100
Q ss_pred --------------------eCC----------------------------------------------ceEEE------
Q 002519 758 --------------------KGG----------------------------------------------TAQMR------ 765 (913)
Q Consensus 758 --------------------~~~----------------------------------------------~~~v~------ 765 (913)
+.. +..++
T Consensus 257 G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~ 336 (775)
T KOG0319|consen 257 GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEE 336 (775)
T ss_pred cCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCcc
Confidence 000 00000
Q ss_pred ----------------------------------Ee--cCCCEEEEEEcCCeEEEEECCCCe------------------
Q 002519 766 ----------------------------------FQ--PHLGRYLAAAAENVVSILDAETQA------------------ 791 (913)
Q Consensus 766 ----------------------------------~s--~~~~~ll~~~~dg~I~i~D~~t~~------------------ 791 (913)
.. ..+..+++++.|.++++|.++++.
T Consensus 337 ~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGA 416 (775)
T ss_pred ceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccce
Confidence 00 122245555666677776442110
Q ss_pred ----------------------------------EEE----EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002519 792 ----------------------------------CRL----SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 832 (913)
Q Consensus 792 ----------------------------------~~~----~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~ 832 (913)
.+. +...|...|++++++|+.++|++|+.| +.+||++..
T Consensus 417 va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-- 494 (775)
T KOG0319|consen 417 VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-- 494 (775)
T ss_pred eeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC--
Confidence 000 123477888889999998999999999 889999873
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 833 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 833 ~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
......+.+|...+.++.|++....+++++.|++|+||.+.+..++ ++.+|+..|..+.|-.+++.|+||+.||.|+|
T Consensus 495 -~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKl 573 (775)
T KOG0319|consen 495 -LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKL 573 (775)
T ss_pred -ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEE
Confidence 4788999999999999999999999999999999999999999998 88999999999999999999999999999999
Q ss_pred eC
Q 002519 912 WK 913 (913)
Q Consensus 912 Wd 913 (913)
|+
T Consensus 574 Wn 575 (775)
T KOG0319|consen 574 WN 575 (775)
T ss_pred Ee
Confidence 96
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=321.57 Aligned_cols=282 Identities=18% Similarity=0.305 Sum_probs=238.1
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC----c----eeeEeccCCCCeEEEEECCC-CCEEEEEeCCCeE
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----K----SKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTV 699 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~----~----~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V 699 (913)
+..|.+.|++++|+++|++||+|+.|++|+|||+... . .+..+. +...|.+++|++. +.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 122333 3467999999874 7899999999999
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC--CceEEEEe-cCCCEEEEE
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQ-PHLGRYLAA 776 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~s-~~~~~ll~~ 776 (913)
+|||+.+ +..+..+.+|...|++++|+|.+..+|++|+.|++|++||++++.++..+.. .+.++.|. +++..++++
T Consensus 558 ~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVAR-SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCC-CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 9999987 6778888999999999999985556778999999999999999988877654 44567775 457788899
Q ss_pred EcCCeEEEEECCCCe-EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC---CCceEEEeecCCCceEEEE
Q 002519 777 AAENVVSILDAETQA-CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS---EGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 777 ~~dg~I~i~D~~t~~-~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~---~~~~i~~~~~~~~~i~~l~ 851 (913)
+.|+.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.| +|+|||++... ...++..+.+|...+..++
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999998875 567788999999999997 67889999998 99999997542 2356788889999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE--------------EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 852 FHPTYPSLLVIGCYQSLELWNMSENKTM--------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 852 ~sp~g~~l~s~s~dg~I~iwd~~~~~~~--------------~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|++++.+|++|+.|+.|+||+......+ ....|...|.+++|++++.+|++|+.||.|+||+
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999999999998655322 1233556799999999999999999999999996
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-30 Score=285.48 Aligned_cols=278 Identities=20% Similarity=0.320 Sum_probs=252.4
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC-CeEEEEEcCCCCc
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-KTVRVWDADNPGY 709 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g~V~Iwdl~~~~~ 709 (913)
.....|+|++|++..+.||+|-..|.+.+|.+....+++.+.-....|..+.|+..|.+||.||.. |.+-||++.+ ..
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs-Es 341 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS-ES 341 (893)
T ss_pred ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec-cc
Confidence 344889999999999999999999999999999999999999888999999999999999999874 8999999988 44
Q ss_pred eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEEEcCCeEEEEE
Q 002519 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 710 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~~~dg~I~i~D 786 (913)
-+....+|...|++++++|||. ++++|++||.|+|||...+-|..+|..+ ++.+.|+..+..+++.+-||+|+.||
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred eeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 5666779999999999999987 6679999999999999999999999765 56788999999999999999999999
Q ss_pred CCCCeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 002519 787 AETQACRLSLQGHT-KPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 863 (913)
Q Consensus 787 ~~t~~~~~~l~~h~-~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s 863 (913)
+...+..+++.... ....|++.+|.|.++++|+.| .|.||++.+| ..+..+.+|+++|.+++|+|.+..|++++
T Consensus 421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG---qllDiLsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG---QLLDILSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---eeeehhcCCCCcceeeEEccccCeEEecc
Confidence 99999999988643 357889999999999999999 8999999988 88899999999999999999999999999
Q ss_pred cCCeEEEEECCCC-cEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 864 CYQSLELWNMSEN-KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 864 ~dg~I~iwd~~~~-~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.|.+|++||+-.. ..+....+...|.+++|+|+|+.||++..||.|.|||
T Consensus 498 WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 498 WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 9999999998654 3445566788899999999999999999999999997
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-31 Score=256.91 Aligned_cols=280 Identities=19% Similarity=0.327 Sum_probs=239.4
Q ss_pred ceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002519 623 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 702 (913)
Q Consensus 623 ~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 702 (913)
-+..+.+..|.+.|.++.|+-||+|.++++.|++|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+|
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 34667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eeEEee---CCceEEEEecCCCEEEEEE
Q 002519 703 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFK---GGTAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 703 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~~---~~~~~v~~s~~~~~ll~~~ 777 (913)
|+.+ ++.++.|.+|.+.|+.+.|+.+. .++++|+.|..|++||.++.. .+..+. ..+.++. -.+..+++++
T Consensus 87 DV~T-Gkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~--v~~heIvaGS 162 (307)
T KOG0316|consen 87 DVNT-GKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID--VAEHEIVAGS 162 (307)
T ss_pred Eccc-CeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE--ecccEEEeec
Confidence 9999 88999999999999999999875 477799999999999998764 444443 3344443 4456889999
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCc--eEEEEEeC
Q 002519 778 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHP 854 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~--i~~l~~sp 854 (913)
.||+++.||++.+.......+ .+|++++|+++++.+++++.| +|++.|-.++ +.+..+++|.+. -..|++..
T Consensus 163 ~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~q 237 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQ 237 (307)
T ss_pred cCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeecc
Confidence 999999999999987765554 679999999999999999999 9999999887 666677777654 34667888
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCC-eEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 855 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL-IAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 855 ~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~-V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
...++++|+.||.|++||+.....+ .+..+... |.+++++|....|+++.. +.+.+|
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence 8889999999999999999999888 56666666 789999998877777764 345555
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=280.68 Aligned_cols=264 Identities=22% Similarity=0.461 Sum_probs=229.7
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCce
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 710 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~ 710 (913)
.....|+|+.+. ...+++|..|++|+|||..+..+++.+.||++.|.|+.|. .+.|++|+.|.+|+|||+.+ +++
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t-ge~ 269 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT-GEP 269 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC-Cch
Confidence 456789999985 4489999999999999999999999999999999999995 56999999999999999998 889
Q ss_pred eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---eeEEeeCC---ceEEEEecCCCEEEEEEcCCeEEE
Q 002519 711 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSI 784 (913)
Q Consensus 711 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~---~~~~~~~~---~~~v~~s~~~~~ll~~~~dg~I~i 784 (913)
+.++.+|...|..+.|+. .++++|+.|.+|.+||+.... +.+.+.++ ++.+.|+ .+++++++.|.+|++
T Consensus 270 l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV 344 (499)
T ss_pred hhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEE
Confidence 999999999999999983 377799999999999998764 22334444 3444443 458889999999999
Q ss_pred EECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 002519 785 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 863 (913)
Q Consensus 785 ~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s 863 (913)
|++.+++++.++.+|...|-|+.+ .|+++++|+.| +|++||+..| .|+..+.+|+.-|.++.| +.+.|++|+
T Consensus 345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRF--d~krIVSGa 417 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNKRIVSGA 417 (499)
T ss_pred Eeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheee--cCceeeecc
Confidence 999999999999999999988876 58999999999 9999999887 899999999999999999 456899999
Q ss_pred cCCeEEEEECCCCcE----------EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 864 CYQSLELWNMSENKT----------MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 864 ~dg~I~iwd~~~~~~----------~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.||+|+|||+..+.- ..+..|.+.|..+.|. ...|+++++|.+|.|||
T Consensus 418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred ccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 999999999976531 1566799999999984 45799999999999997
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-31 Score=287.50 Aligned_cols=282 Identities=21% Similarity=0.385 Sum_probs=258.1
Q ss_pred eeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
..+++..|+++|.||.|+|...+++++-++|.|.||+.++...++.+.....+|++.+|-.-.++|++|++|..||||+.
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 34556679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeeEEeeCCc---eEEEEecCC-CEEEEEEcC
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGGT---AQMRFQPHL-GRYLAAAAE 779 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~~~~---~~v~~s~~~-~~ll~~~~d 779 (913)
.+ ...+..|..|.+.|.||+.||....+| ++++|-+|++||.+.. .|..+|+++. ..++|.|.+ +.+++++-|
T Consensus 85 nt-~ekV~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 85 NT-GEKVKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred cc-ceeeEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence 98 788999999999999999999988665 9999999999999875 6788888864 578899976 577888889
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC--CEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC
Q 002519 780 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSG--ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg--~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g 856 (913)
++|+||.+....+.+++++|...|+|++|-+.| .+|++|++| +|+|||+.+. .|+.++.+|...|..++|+|.-
T Consensus 163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPEL 239 (794)
T ss_pred ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCC
Confidence 999999999999999999999999999999855 499999999 9999999776 8999999999999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 857 PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 857 ~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
..|++|+.||+|+||+..+-+.. ++.-.-..|+|++-.+.++.|+.|.++|.|.|
T Consensus 240 piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999999887766 56666788999999999999999999998764
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=269.21 Aligned_cols=242 Identities=27% Similarity=0.526 Sum_probs=221.4
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC-CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 705 (913)
..+++|++.|.+|+|+..|++||+++.|-.+++||.++ .++++.+.+|+..|.+++|-|.|.+|++++.|.+|+.|+++
T Consensus 144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~ 223 (406)
T KOG0295|consen 144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD 223 (406)
T ss_pred hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc
Confidence 35789999999999999999999999999999999986 78889999999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---CCceEEEEecCC------------
Q 002519 706 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHL------------ 770 (913)
Q Consensus 706 ~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~s~~~------------ 770 (913)
+ +.++.+|.+|...|..++.+.||. ++++|+.|.+|++|-+.++.|...+. ..+.+++|.|..
T Consensus 224 t-g~cv~t~~~h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~ 301 (406)
T KOG0295|consen 224 T-GYCVKTFPGHSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST 301 (406)
T ss_pred c-ceeEEeccCchHhEEEEEecCCee-EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC
Confidence 9 899999999999999999998865 88899999999999999996655443 455666665432
Q ss_pred ---CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCc
Q 002519 771 ---GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 846 (913)
Q Consensus 771 ---~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~ 846 (913)
..+.+++.|++|++||+.++.++.++.+|.++|..++|+|.|+||+++.+| +++|||+++. .|.+.+..|..-
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---~cmk~~~ah~hf 378 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---QCMKTLEAHEHF 378 (406)
T ss_pred CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---eeeeccCCCcce
Confidence 367778889999999999999999999999999999999999999999999 9999999876 899999999999
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002519 847 FHSCVFHPTYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 847 i~~l~~sp~g~~l~s~s~dg~I~iwd~ 873 (913)
++++.|+.+..++++|+-|.++++|..
T Consensus 379 vt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999974
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=281.83 Aligned_cols=341 Identities=20% Similarity=0.331 Sum_probs=257.4
Q ss_pred CCCcccc--CCCCeEEeCCCcchhhhcccccccCCccCceeeecccCCC-----CCCCCCCcccccccCccceeeeEeec
Q 002519 559 DGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDT-----DPRDAGGRGMDVSQGFSFKEANSVRA 631 (913)
Q Consensus 559 dg~~~~~--~~~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~-----~~~d~~~~~~~~~~~~~~~~~~~l~~ 631 (913)
.|.+.+. ...+.+||.++|+....+-..... ..+.+....++. +.+|+.+++|+...+ ....++.+
T Consensus 33 ~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k----~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~---~~~~tfng 105 (888)
T KOG0306|consen 33 KGRAVAVSALEQVNIWDLRTGEIEKKLILLKKK----AEVTCLRSSDDILLLAVGYADGSVQIFSLESE---EILITFNG 105 (888)
T ss_pred CCcEEEEeccccEeEEeeecchhhhhhhhhccc----ceEEEeeccCCcceEEEEecCceEEeeccCCC---ceeeeecc
Confidence 3555544 335588999999776655432111 234444444443 356777888877655 67788999
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
|...|+++.|+..|.+||+|+.|+.|.|||+-...-...+++|...|+..-|..+.++|+++|.|+.|++||+++ ..++
T Consensus 106 HK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~t-qhCf 184 (888)
T KOG0306|consen 106 HKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLET-QHCF 184 (888)
T ss_pred cccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccc-ceee
Confidence 999999999999999999999999999999998888999999999999999999889999999999999999998 7788
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC----------------C-------------------e---e
Q 002519 712 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----------------G-------------------S---C 753 (913)
Q Consensus 712 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~----------------~-------------------~---~ 753 (913)
.+...|.+.|+.+++++ .++++++.|+.+++|++.. | + |
T Consensus 185 ~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c 261 (888)
T KOG0306|consen 185 ETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVC 261 (888)
T ss_pred eEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEE
Confidence 88888888898888886 2556788888888888710 0 0 0
Q ss_pred -------------------------------------------------------------eEEe---------------
Q 002519 754 -------------------------------------------------------------TRVF--------------- 757 (913)
Q Consensus 754 -------------------------------------------------------------~~~~--------------- 757 (913)
++.+
T Consensus 262 ~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l 341 (888)
T KOG0306|consen 262 QGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLL 341 (888)
T ss_pred ecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEe
Confidence 0000
Q ss_pred ----------e------------------C---CceEEEEecCCCEEEEEEcCCeEEEEECCCCeE--------------
Q 002519 758 ----------K------------------G---GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-------------- 792 (913)
Q Consensus 758 ----------~------------------~---~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~-------------- 792 (913)
. + .+..++++.+ ..+++.+..+.|.||+..+.+|
T Consensus 342 ~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d-~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~F 420 (888)
T KOG0306|consen 342 ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD-SILLASGAGESIKIWNRDTLKCIRTITCGYILASKF 420 (888)
T ss_pred ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC-ceeeeecCCCcEEEEEccCcceeEEeccccEEEEEe
Confidence 0 0 0001111111 2233333345555565554444
Q ss_pred --------------------------EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC-----CceE---
Q 002519 793 --------------------------RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-----GECV--- 837 (913)
Q Consensus 793 --------------------------~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~-----~~~i--- 837 (913)
+.++.+|++.|.+++.+||++.+++++.| +|++||+.--.. .+.+
T Consensus 421 vpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 421 VPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK 500 (888)
T ss_pred cCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec
Confidence 33456789999999999999999999999 999999842211 1111
Q ss_pred --EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 838 --HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 838 --~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
..+ .-...|.++.+|||+++|+++--|.+|+||-+++.+.. .+.+|.-+|.|+.++||+++|+|||.|..|+||
T Consensus 501 ~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 501 HTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred cceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 111 12567899999999999999999999999999998876 899999999999999999999999999999999
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=260.03 Aligned_cols=278 Identities=22% Similarity=0.321 Sum_probs=246.7
Q ss_pred EeecCCCCEEEEEEec---CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 628 SVRASTSKVICCHFSS---DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 628 ~l~~H~~~V~~l~fsp---dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
+..+|+.+|..++||| +|-+|++++.|+.-.+-+-+++.-+.+|.+|.+.|++..++.+..+-++++.|-+.+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4578999999999986 8999999999999999999999999999999999999999999989999999999999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----eEEeeCCceEEEEecCCCEEEEEEcCC
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQPHLGRYLAAAAEN 780 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~~~~~~v~~s~~~~~ll~~~~dg 780 (913)
-+ +..+..|. |..-|.+++|+.|.++|+ +|+.+..+||||++..+. +....+++..+.|...+..+++++.|+
T Consensus 89 ~t-gdelhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 89 VT-GDELHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hh-hhhhhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 88 66677665 889999999999977666 999999999999987542 233445677788999999999999999
Q ss_pred eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEE
Q 002519 781 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 860 (913)
Q Consensus 781 ~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~ 860 (913)
+|++||.++++.+.++. ...+|+++.++++|++|.++....|++||..+. ..++.++. ...|.+..++|+...++
T Consensus 166 tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k~-P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYKM-PCNVESASLHPKKEFFV 240 (334)
T ss_pred ceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeeccC-ccccccccccCCCceEE
Confidence 99999999999999887 567899999999999998888889999999766 44444443 56788999999999999
Q ss_pred EEEcCCeEEEEECCCCcEE-E-EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 861 VIGCYQSLELWNMSENKTM-T-LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 861 s~s~dg~I~iwd~~~~~~~-~-~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+|+.|..++.||+.+++.+ . ..+|.++|.|+.|+|+|...++|+.||+|+||.
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 9999999999999999988 3 379999999999999999999999999999993
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-32 Score=281.28 Aligned_cols=260 Identities=25% Similarity=0.437 Sum_probs=224.2
Q ss_pred CCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCeEEEEECCCCC
Q 002519 610 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMP 688 (913)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-h~~~V~~l~fspdg~ 688 (913)
+....+.++++..|.....+.+|.+.|+++.|+++|.++++|+.+|.|++|+..-.. ++.+.. |...|++++|+|++.
T Consensus 115 s~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDs 193 (464)
T KOG0284|consen 115 SQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDS 193 (464)
T ss_pred cccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCc
Confidence 344456667777777778889999999999999999999999999999999976444 444444 559999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEE
Q 002519 689 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMR 765 (913)
Q Consensus 689 ~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~ 765 (913)
.|++||+||+|+|||... .+..+.+.+|.-.|.+++|+|... +|++++.|..|++||.+++.|+.++.++ +..+.
T Consensus 194 kF~t~SdDg~ikiWdf~~-~kee~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~ 271 (464)
T KOG0284|consen 194 KFLTCSDDGTIKIWDFRM-PKEERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK 271 (464)
T ss_pred eeEEecCCCeEEEEeccC-CchhheeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcchhhhhhhccceEEEEE
Confidence 999999999999999987 555677799999999999999854 7889999999999999999999877554 56688
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCCceEEEeecC
Q 002519 766 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCN 843 (913)
Q Consensus 766 ~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg-~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~ 843 (913)
|.+++++|++++.|..+++||+++.+.+.++++|+..|+++.|+|-. .+|++|+.| .|..|.+...+ .....-..|
T Consensus 272 f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AH 349 (464)
T KOG0284|consen 272 FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAH 349 (464)
T ss_pred EcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCccc
Confidence 99999999999999999999999999999999999999999999954 488888888 99999986332 222233467
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002519 844 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 844 ~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
...|.+++|+|-|..|++|+.|.++++|.-.
T Consensus 350 d~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 350 DGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccceeeeeccccceeEeecCCCcceeeeccC
Confidence 8899999999999999999999999999753
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=285.76 Aligned_cols=278 Identities=23% Similarity=0.408 Sum_probs=253.8
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
.+.+|...|++++||.|...+++|+ .+.|+||+.++.++++++... .+.+..|.|.++++++|...|.+.|||+.+
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS- 443 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS- 443 (888)
T ss_pred eeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh-
Confidence 4668999999999999988888775 678999999999999999754 899999999999999999999999999997
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-----e----------eeEEeeCCceEEEEecCCCE
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-----S----------CTRVFKGGTAQMRFQPHLGR 772 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-----~----------~~~~~~~~~~~v~~s~~~~~ 772 (913)
...+.+...|.+.|++|+.+||+..++ +|+.|.+|++||..-- . ..-.+...+.++.++|++.+
T Consensus 444 ~~l~Eti~AHdgaIWsi~~~pD~~g~v-T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 444 ASLVETIRAHDGAIWSISLSPDNKGFV-TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhhhhhhhccccceeeeeecCCCCceE-EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 667788889999999999999988766 9999999999997521 1 11223456788999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEE
Q 002519 773 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~ 851 (913)
++++--|++|+||-+.+.+....+.||.-+|.|+.++||++++++|+.| +|+||-+.-| .|-+.+..|...|.++.
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEEE
Confidence 9999999999999999999999999999999999999999999999999 9999999776 88889999999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 852 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 852 ~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|.|....+++++.|+.|+-||-...+.+ .+.+|...|+|++.+|+|.+++++|+|.+|++|.
T Consensus 600 F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 600 FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 9999999999999999999999888777 8999999999999999999999999999999995
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-30 Score=251.71 Aligned_cols=280 Identities=19% Similarity=0.271 Sum_probs=247.1
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee--EeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEE
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWD 703 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~--~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~Iwd 703 (913)
+.+++|...|.+|+|+.+|..||+|+.|++++||+++..+..+ ..++|.+.|-.++|+|. ...|++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5678999999999999999999999999999999998765544 45689999999999875 45899999999999999
Q ss_pred cCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--eCCceEEEEecCCCEEEEEEcCCe
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENV 781 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ll~~~~dg~ 781 (913)
++. ++++.......+.|. +.|+|+|.+++ +++.|..|.+.|.++.+....+ +..+..++|+-++..++.....|+
T Consensus 94 ~r~-~k~~~~i~~~~eni~-i~wsp~g~~~~-~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRS-GKCTARIETKGENIN-ITWSPDGEYIA-VGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred ecc-CcEEEEeeccCcceE-EEEcCCCCEEE-EecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 998 666666554444444 88999988655 8899999999999998776654 456778899988888888888899
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEE
Q 002519 782 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 860 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~ 860 (913)
|.|......+++..++.|.....||.|+|+|++|++|+.| .+.+||+. +..|++.+..++.+|..+.|+.+|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~---ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD---ELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChh---HhhhheeeccccCceEEEEeccCcceee
Confidence 9999999999999999999999999999999999999999 99999995 4588889999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC---------CcEEEe
Q 002519 861 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD---------KFVKLW 912 (913)
Q Consensus 861 s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~D---------G~I~IW 912 (913)
+++.|..|-|=++.+|..+....++++...++|+|...+||.+++| |.|+||
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999989999999999999999999998865 566665
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=267.84 Aligned_cols=276 Identities=25% Similarity=0.438 Sum_probs=244.5
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec--------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--------EHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~--------~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
..+-+-|..|||||.||++|+.||.|.||+..+|+..+.++ -+...|.|++|+.|...|++|+.||.|+||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 45668899999999999999999999999999998776654 4788999999999999999999999999999
Q ss_pred cCCCCceeEEec-cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc---eEEEEecCCCEEEEEEcC
Q 002519 704 ADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 704 l~~~~~~~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~s~~~~~ll~~~~d 779 (913)
+.+ +.+++.|. .|...|+|+.|+.|+..++ +++.|-+|+|.-+++|++++.|+++. +...|.++|..+++++.|
T Consensus 292 i~t-G~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 292 IET-GQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred Eec-chHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 999 77777776 8999999999999988777 99999999999999999999999875 457799999999999999
Q ss_pred CeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCCceEEEeec---CCCceEEEEE
Q 002519 780 NVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSC---NGNKFHSCVF 852 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~--h~~~V~sl~~spdg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~---~~~~i~~l~~ 852 (913)
|+|++|+.++.+|+.+++. .+-+|.++-..|... .+++|... +|+|.++.. ..++.+.. .++.+.+++.
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEEe
Confidence 9999999999999998874 455788888888554 67777766 999998853 44444433 3567889999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 853 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 853 sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+|.|.++++.+.|+.++.|.+.+|++. ++..|+..|..++-+|..+.||+-++||.+++|+
T Consensus 446 SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999877 7889999999999999999999999999999996
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=250.36 Aligned_cols=279 Identities=16% Similarity=0.257 Sum_probs=237.6
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
.+.+|..+++-|.|+.+|.+|++++.|.++.||-..+|+.+.++.+|.+.|+|++.+.+.++|++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t- 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET- 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC-
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEe----CCCcEEEEEcCC-------CeeeEEee---CCceEEEEecCCCEE
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSINN-------GSCTRVFK---GGTAQMRFQPHLGRY 773 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs----~Dg~I~iwdl~~-------~~~~~~~~---~~~~~v~~s~~~~~l 773 (913)
++.+..++ ....|..+.|+.+|..++++.. ..+.|.++|++. .++...+. ..++...|.+.+..+
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 77777776 5678999999999886665442 347899999984 33344433 345677899999999
Q ss_pred EEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEE
Q 002519 774 LAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 774 l~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~ 851 (913)
++|..||.|.+||++++ +.+.....|...|+.+++++|..++++++.| +.++||+++. .+++.+.. ..++++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~t-e~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYTT-ERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEeee-ccccccee
Confidence 99999999999999998 5556667899999999999999999999999 9999999876 66666665 78999999
Q ss_pred EeCCCCEEEEEEcCCeEEEE--ECCCC------------cEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 852 FHPTYPSLLVIGCYQSLELW--NMSEN------------KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 852 ~sp~g~~l~s~s~dg~I~iw--d~~~~------------~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
++|...+++.|+.-....|- +.+.+ +.+ .+.+|-++|++++|+|+|+..++|++||.|+|.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 99999998888765433332 22222 222 678999999999999999999999999999984
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=257.48 Aligned_cols=283 Identities=19% Similarity=0.275 Sum_probs=243.0
Q ss_pred eeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
.+..|..|++.|++|+.+|+.+++|||+.|....||++.++.....+.+|+..|+++.|+.||.+||||+.+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc---eEEEEecCCCEEEEEEcCCe
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENV 781 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~s~~~~~ll~~~~dg~ 781 (913)
.+ +.....+......|.-++|||.+. +|++|+.||.|.+|.+.++...+.+.++. ++-+|.|+|++++++..||+
T Consensus 136 st-g~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 ST-GGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred cc-CceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98 555555656677888899999754 66699999999999999988888887754 45679999999999999999
Q ss_pred EEEEECCCCeEEEEecCC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEee--------cCC---CceE
Q 002519 782 VSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS--------CNG---NKFH 848 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h-~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~--------~~~---~~i~ 848 (913)
|++|+..++.+++.+... .....++.++..+..++.|+.+ .+++....+++ .+.... .+. ..|.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK---Vv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK---VVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccce---EEEecCCCCccccccchhhhhhhh
Confidence 999999999999888743 3457788888888889988888 77777776663 222222 122 2344
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 849 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.+.|+..-+..++|+-||+|.|||+...+......|...|..+.|-+ ..+|++++.||.|++||
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 55566677889999999999999999999999999999999999998 77999999999999997
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=282.49 Aligned_cols=281 Identities=21% Similarity=0.379 Sum_probs=250.2
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
.++..+..|..++|+|...+++++-..|.|.+||..-+.++..|..|.++|..|+|+|...++++|++|-+|+||+.++
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~- 82 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT- 82 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-
Confidence 3555678899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc---eEEEEecCCCEEEEEEcCCeEEE
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSI 784 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~s~~~~~ll~~~~dg~I~i 784 (913)
.+++.++.||-+.|..+.||+.-..+| ++++|-+|+||+..+++|+..+.++. .+..|+|....+++++-|-+|+|
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 889999999999999999999977665 99999999999999999999998874 56679999999999999999999
Q ss_pred EECCCC-----------------------------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCC
Q 002519 785 LDAETQ-----------------------------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG 834 (913)
Q Consensus 785 ~D~~t~-----------------------------~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~ 834 (913)
||+... -..+.+.+|+..|+-++|+|.-.+|++|++| .|++|.+... +.
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet-Ka 240 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-KA 240 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc-cc
Confidence 998521 1234578999999999999999999999999 9999999654 23
Q ss_pred ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 835 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 835 ~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
-.+.+..+|.+.|.++.|+|.-+.|++.+.|++|+|||+...+.+ ++....+..+.++.+|..++++.|-+.| +.||
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VF 318 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVF 318 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEE
Confidence 456677889999999999999999999999999999999998877 6666778899999999999887665444 5555
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-29 Score=287.47 Aligned_cols=244 Identities=30% Similarity=0.490 Sum_probs=217.5
Q ss_pred eeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEEC-CCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 626 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 626 ~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~-~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
...+.+|...|++++|+||+++|++++.|++|+|||+ ..+..++++++|...|++++|+|++++|++|+.|++|+|||+
T Consensus 196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~ 275 (456)
T KOG0266|consen 196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDV 275 (456)
T ss_pred hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEec
Confidence 3445789999999999999999999999999999999 567899999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eeEEeeC-----CceEEEEecCCCEEEEEE
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKG-----GTAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~~~-----~~~~v~~s~~~~~ll~~~ 777 (913)
++ +.+++.+.+|...|++++|.+++.. |++++.|+.|+|||+.++. +...+.. .+..+.|+|++.++++++
T Consensus 276 ~~-~~~~~~l~~hs~~is~~~f~~d~~~-l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 276 RT-GECVRKLKGHSDGISGLAFSPDGNL-LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred cC-CeEEEeeeccCCceEEEEECCCCCE-EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 98 8999999999999999999999775 5577899999999999998 4555432 357788999999999999
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCC---eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecC-CCceEEEEE
Q 002519 778 AENVVSILDAETQACRLSLQGHTKP---IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVF 852 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~~h~~~---V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~-~~~i~~l~~ 852 (913)
.|+.+++||+..++++..+.+|... +.+..+++.+.++++++.| .|++||+.++ ..+..+..| ...+..+.+
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDLSS 430 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceecccc
Confidence 9999999999999999999998774 4445567789999999999 9999999875 566677777 788999999
Q ss_pred eCCCCEEEEEE--cCCeEEEEECC
Q 002519 853 HPTYPSLLVIG--CYQSLELWNMS 874 (913)
Q Consensus 853 sp~g~~l~s~s--~dg~I~iwd~~ 874 (913)
++...++++++ .|+.|++|...
T Consensus 431 ~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 431 HPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCcCeeeecCcCCCceEEEecCC
Confidence 99999999998 68899999754
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-29 Score=269.49 Aligned_cols=241 Identities=24% Similarity=0.370 Sum_probs=217.4
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 706 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 706 (913)
+.++-..-+|+++.|-....++++|+.|..|+||+..+++.++.|+.|.+.|+||+.+|...+++|+|+|-+|++||.+.
T Consensus 49 ksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~ 128 (794)
T KOG0276|consen 49 KSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN 128 (794)
T ss_pred eeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC
Confidence 34444566899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCC--CEEEEEEcCCe
Q 002519 707 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHL--GRYLAAAAENV 781 (913)
Q Consensus 707 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~--~~ll~~~~dg~ 781 (913)
.-.+..+|.||...|.+|+|+|.+...|++++-|++|++|.+....+..++++ +++++++-+.+ .++++++.|.+
T Consensus 129 ~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t 208 (794)
T KOG0276|consen 129 EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT 208 (794)
T ss_pred ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce
Confidence 77889999999999999999999999999999999999999999988888876 56788887655 58999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEE
Q 002519 782 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 860 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~ 860 (913)
|+|||..+..|+.++.+|...|..++|+|.-.+|++|++| +++||.-.+- +....+.-....+++++..+.++.++
T Consensus 209 iKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~i~ 285 (794)
T KOG0276|consen 209 IKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGKIA 285 (794)
T ss_pred EEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCeEE
Confidence 9999999999999999999999999999999999999999 9999998765 45555556677899999999888888
Q ss_pred EEEcCCeEEE
Q 002519 861 VIGCYQSLEL 870 (913)
Q Consensus 861 s~s~dg~I~i 870 (913)
+|...|.|.|
T Consensus 286 vG~Deg~i~v 295 (794)
T KOG0276|consen 286 VGFDEGSVTV 295 (794)
T ss_pred EeccCCcEEE
Confidence 8877775543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=269.41 Aligned_cols=284 Identities=21% Similarity=0.306 Sum_probs=243.7
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
.....+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+++.|.++++.+++++.|+.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 4456678899999999999998999999999999999998655 77888999999999999999999999999999999
Q ss_pred EEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCe
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 781 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~ 781 (913)
|+++. .....++.+|.+.|+++.|...... +++|+.|.+|++||+....|.+++-....+..+......++++-.|+.
T Consensus 246 Wnvd~-~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 246 WNVDS-LRLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKK 323 (459)
T ss_pred eeccc-hhhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccc
Confidence 99997 7788899999999999999876554 669999999999999999998876554444333333566777778999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecC----CCceEEEEEeCCC
Q 002519 782 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN----GNKFHSCVFHPTY 856 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~----~~~i~~l~~sp~g 856 (913)
|++||+++..++.+...+. .|+++..++++..|.+++.| ++.++|+++.. ....+... ...++.++|+|++
T Consensus 324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e---I~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE---IRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred eEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccccc---EEEEeeccccccccccceeEECCCC
Confidence 9999999999999998765 89999999999988888888 99999998763 33333221 2347889999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEE-Ecc-c-CCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 857 PSLLVIGCYQSLELWNMSENKTMT-LTA-H-EGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 857 ~~l~s~s~dg~I~iwd~~~~~~~~-~~~-h-~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.|+++|+.||.|+||++.++++.. +.. + ...|++++|+|.|..|++++.++.+.+|.
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999999873 332 2 23699999999999999999999999994
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=266.09 Aligned_cols=291 Identities=16% Similarity=0.220 Sum_probs=235.7
Q ss_pred ccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC----ceeeEe-ccCCCCeEEEEECCCCCEEEEEeC
Q 002519 621 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNL-EEHSSLITDVRFSPSMPRLATSSF 695 (913)
Q Consensus 621 ~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~----~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~ 695 (913)
........+.+|+..|.++++.|.|.+|++|+.|.+|++||+... +..+.+ ......|.++.|++.+..|++.+.
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 355566778999999999999999999999999999999999732 222222 234567999999999999999998
Q ss_pred CCeEEEEEcCCCCcee------------EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-eEEee----
Q 002519 696 DKTVRVWDADNPGYSL------------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFK---- 758 (913)
Q Consensus 696 Dg~V~Iwdl~~~~~~~------------~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~~---- 758 (913)
...++|+|-+. ...+ ...+||...++|.+|+|+.+..|++|+.||++||||++..+. ..+|+
T Consensus 235 ~aqakl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 235 SAQAKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred CcceeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 89999999874 2222 233589999999999999999999999999999999987543 23332
Q ss_pred ----CCceEEEEecCCCEEEEEEcCCeEEEEECCCCe---EEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002519 759 ----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA---CRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTV 828 (913)
Q Consensus 759 ----~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~---~~~~l~~h~~--~V~sl~~spdg~~l~s~s~d-~I~vwdl 828 (913)
..+..++|++++..|++++.||.|.+||..... ..+.-.+|.. .|+||+|++||++|++-+.| ++++||+
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 245678899999999999999999999986542 2333456877 89999999999999999999 9999999
Q ss_pred CCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEc------CCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEE
Q 002519 829 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVA 901 (913)
Q Consensus 829 ~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~------dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~La 901 (913)
+..++...+.+--....+-+.|+|+|+.+.|++|+. .+.+.+||..+...+ .+.-....|..+.|+|.-+.|+
T Consensus 394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~ 473 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF 473 (641)
T ss_pred cccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee
Confidence 977544333333334556788999999999999875 368999999988877 5666688899999999988899
Q ss_pred EEeCCCcEEEe
Q 002519 902 SASHDKFVKLW 912 (913)
Q Consensus 902 sgs~DG~I~IW 912 (913)
.|+.||.++||
T Consensus 474 ~gsgdG~~~vy 484 (641)
T KOG0772|consen 474 AGSGDGTAHVY 484 (641)
T ss_pred eecCCCceEEE
Confidence 99999999986
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-28 Score=245.27 Aligned_cols=284 Identities=21% Similarity=0.310 Sum_probs=239.3
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC--CCeE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTV 699 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~--Dg~V 699 (913)
.++..+.++.-.+.|.++.|+++|.+|++++.|.+|+|||..+++.++++..++..|..++|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 35566677778899999999999999999999999999999999999999999999999999888888877776 8999
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC-CceEEEEecCCCEEEEEEc
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-GTAQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-~~~~v~~s~~~~~ll~~~~ 778 (913)
|..++.+ .+.++.|.||...|.+|+.+|-++.+ ++++.|++|++||++..+|...+.. +...++|.|.|-.++++..
T Consensus 83 ryLsl~d-NkylRYF~GH~~~V~sL~~sP~~d~F-lS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHD-NKYLRYFPGHKKRVNSLSVSPKDDTF-LSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeec-CceEEEcCCCCceEEEEEecCCCCeE-EecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecC
Confidence 9999998 78899999999999999999988654 5999999999999999998887765 4456789999888887777
Q ss_pred CCeEEEEECCCC--eEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCC---ceEE
Q 002519 779 ENVVSILDAETQ--ACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN---KFHS 849 (913)
Q Consensus 779 dg~I~i~D~~t~--~~~~~l~---~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~---~i~~ 849 (913)
.+.|++||++.- .+..++. +.....+.|.|+|||++|+.+... .+++.|.-+|. .+..+..+.. .-..
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---VKSTFSGYPNAGNLPLS 237 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---EeeeEeeccCCCCccee
Confidence 779999999874 3333333 345678999999999988888777 89999998774 4444444333 3367
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 850 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 850 l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~-h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
++|.|++++|++|+.||+|.+|++++++.+ .+.+ +.+++.++.|+|.--++++++ ..+.+|
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence 899999999999999999999999999887 5555 789999999999877777664 457777
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=258.14 Aligned_cols=242 Identities=22% Similarity=0.443 Sum_probs=221.8
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEE
Q 002519 665 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 744 (913)
Q Consensus 665 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~ 744 (913)
.+..+.+.+|.+.|.||++.|-+.+|++|+.|++|+|||+.+ +....++.||...|..+++++...++| +|+.|+.|+
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~rHpYlF-s~gedk~VK 218 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKRHPYLF-SAGEDKQVK 218 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeecccCceEE-EecCCCeeE
Confidence 456677889999999999999999999999999999999998 888889999999999999999877665 999999999
Q ss_pred EEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002519 745 YWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 745 iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d 821 (913)
+||++..+.++.+.++ +.++..+|....+++++.|.+++|||+++...+..+.+|..+|.++.+.|...-+++|+.|
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 9999999999998875 4567788999999999999999999999999999999999999999999988899999999
Q ss_pred -eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 002519 822 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 899 (913)
Q Consensus 822 -~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~ 899 (913)
+|++||++.+ +....+..|...+.+++.+|....|++++.| .|+-|++..+..+ .+.+|...|++++...|+ +
T Consensus 299 ~tvrlWDl~ag---kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 299 STVRLWDLRAG---KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-V 373 (460)
T ss_pred ceEEEeeeccC---ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-e
Confidence 9999999987 6777888899999999999998877777665 6999999999877 788999999999998887 7
Q ss_pred EEEEeCCCcEEEeC
Q 002519 900 VASASHDKFVKLWK 913 (913)
Q Consensus 900 Lasgs~DG~I~IWd 913 (913)
+++|+++|.|.+||
T Consensus 374 ~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWD 387 (460)
T ss_pred EEEcCCceEEEEEe
Confidence 88999999999997
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=249.05 Aligned_cols=285 Identities=22% Similarity=0.388 Sum_probs=239.5
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC------------------CceeeEeccCCCCeEEEEECC
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSP 685 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~------------------~~~~~~l~~h~~~V~~l~fsp 685 (913)
-+...+..|...++|.+|++||.++|+|+.|..|+|+|++. .-.++++..|.+.|+++.|+|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 34566788999999999999999999999999999999861 134678888999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCC--ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe------
Q 002519 686 SMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------ 757 (913)
Q Consensus 686 dg~~Lasgs~Dg~V~Iwdl~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~------ 757 (913)
...+|++|+.|++|++||+.... +..+.| .....|.+|.|+|.|+.++ .|..-.++++||+++..|...-
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCccccc
Confidence 99999999999999999997522 112222 3567899999999988665 8888899999999998876543
Q ss_pred eCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC-CC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCC
Q 002519 758 KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG 834 (913)
Q Consensus 758 ~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~-h~-~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~ 834 (913)
.+.+.++.+++.+..+++++.||.|+|||.-+++|+.++.. |. ..|.+..|..+|+||++.+.| .|++|.+.++
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~--- 337 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG--- 337 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---
Confidence 45778899999999999999999999999999999998864 54 469999999999999999999 9999999887
Q ss_pred ceEEEeecCCC-----ceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 835 ECVHELSCNGN-----KFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 835 ~~i~~~~~~~~-----~i~~l~~sp~g~~l~s~s~d-g~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
+++.++.+.+. --+...|+....+++.-... +.+.-||.++...+ .-.+|.+.|.++.-+|.+.-+.+|++|
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD 417 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDD 417 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccc
Confidence 67777665421 12345677777777766553 68999999988766 456899999999999999999999999
Q ss_pred CcEEEeC
Q 002519 907 KFVKLWK 913 (913)
Q Consensus 907 G~I~IWd 913 (913)
..+++|.
T Consensus 418 ~raRFWy 424 (430)
T KOG0640|consen 418 FRARFWY 424 (430)
T ss_pred ceeeeee
Confidence 9999994
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-30 Score=260.15 Aligned_cols=272 Identities=21% Similarity=0.402 Sum_probs=226.0
Q ss_pred CceeeecccCC---CCCCCCCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeE
Q 002519 594 DNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN 670 (913)
Q Consensus 594 ~~v~~~~~~d~---~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~ 670 (913)
+.|.+.-..|+ .+..|..+++||. -++.....+.||++.|.|+.|. .+.|++|+.|.+|+|||+.+++++.+
T Consensus 198 kgVYClQYDD~kiVSGlrDnTikiWD~---n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKIWDK---NSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred CceEEEEecchhhhcccccCceEEecc---ccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH
Confidence 33444433443 3344555555554 3566788899999999999985 45999999999999999999999999
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEc
Q 002519 671 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 748 (913)
Q Consensus 671 l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~--~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl 748 (913)
+-+|...|..+.|+. .++++++.|.+|+|||+..+.. +.+.+.||...|+.+.|+. .+|++++.|.+|++|++
T Consensus 273 lihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWST 347 (499)
T ss_pred HhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEec
Confidence 999999999999974 4999999999999999987542 3467789999999999973 37889999999999999
Q ss_pred CCCeeeEEeeCCceEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEE
Q 002519 749 NNGSCTRVFKGGTAQMRFQPH-LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 826 (913)
Q Consensus 749 ~~~~~~~~~~~~~~~v~~s~~-~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vw 826 (913)
.++++++++.++...+++.-. +..+++|++|.+|++||++.|.++..+.+|+.-|.++.|. .+.|++|..| +|+||
T Consensus 348 st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvW 425 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVW 425 (499)
T ss_pred cceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEE
Confidence 999999999998877766554 4556667779999999999999999999999999999996 5789999999 99999
Q ss_pred ECCCCCCC------ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002519 827 TVGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 827 dl~~~~~~------~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 879 (913)
|+..+... .|+..+..|.+.|..+.| |...|++++.|.+|.|||+..+..-
T Consensus 426 dl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 426 DLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 99876443 366777778888999988 4557999999999999999876543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=252.72 Aligned_cols=276 Identities=21% Similarity=0.356 Sum_probs=233.2
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCC---CEEEEEeCCCeEEEEEcCCC
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM---PRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg---~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
.|.+.|.+|... ++.|++|++||.++|||. .|+..+.+.+|.++|.+++|.-.. ..|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488999999887 779999999999999996 578999999999999998885433 36999999999999999864
Q ss_pred Cce---eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-------------------------eeeEEeeC
Q 002519 708 GYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-------------------------SCTRVFKG 759 (913)
Q Consensus 708 ~~~---~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-------------------------~~~~~~~~ 759 (913)
... +....||...|-+|...+++.. +++|+.|..|+||+..+. ..+..+.+
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCe-EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 332 3344599999999999999775 559999999999993321 11122333
Q ss_pred ---CceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCc
Q 002519 760 ---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 835 (913)
Q Consensus 760 ---~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~ 835 (913)
.+..+.|++ ...+++++.|.+|+.||++++.++.++.+ ...++++.+++..++|++|+.| .|++||.+++....
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 345567777 68889999999999999999998888774 5679999999999999999999 99999999998778
Q ss_pred eEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCc--EEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 836 CVHELSCNGNKFHSCVFHPTYPS-LLVIGCYQSLELWNMSENK--TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 836 ~i~~~~~~~~~i~~l~~sp~g~~-l~s~s~dg~I~iwd~~~~~--~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
....+.+|.+.|.+|.|+|...+ |++++.|+++++||+++.+ +..+.+|...|.++.|. ++.+|++||.|.+|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 88999999999999999997765 6778899999999999876 44889999999999996 45689999999999998
Q ss_pred C
Q 002519 913 K 913 (913)
Q Consensus 913 d 913 (913)
+
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 5
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-29 Score=253.78 Aligned_cols=276 Identities=24% Similarity=0.412 Sum_probs=239.2
Q ss_pred eEEEEcCCCccccCC---CCeEEeCCCcchhhhcccccccCCccCceeeecccCCCCCCCCCCcccccccCccceeeeEe
Q 002519 553 LMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV 629 (913)
Q Consensus 553 ~~~~s~dg~~~~~~~---~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~l 629 (913)
+..|||||.|+++++ -++|||..+|+++.++... .-..|
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ--------------------------------------Aqd~f 259 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ--------------------------------------AQDNF 259 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhhhhhh--------------------------------------hhcce
Confidence 568999999998854 4489999999998776422 11235
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Q 002519 630 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 708 (913)
Q Consensus 630 ~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 708 (913)
.-+.+.|.|++||.|..+||+|+.||+|+||.+.+|.+++.|. .|+..|+|+.|+.|+..|++++.|.+|||.-+.+ +
T Consensus 260 MMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-G 338 (508)
T KOG0275|consen 260 MMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-G 338 (508)
T ss_pred eecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-c
Confidence 5678899999999999999999999999999999999999998 8999999999999999999999999999999998 8
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC-----CceEEEEecCC-CEEEEEEcCCeE
Q 002519 709 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHL-GRYLAAAAENVV 782 (913)
Q Consensus 709 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~s~~~-~~ll~~~~dg~I 782 (913)
++++.|++|...|+...|.++|.++| +++.||+|++|+.++.+|+.+|+. .+..+...|.+ ..++++...++|
T Consensus 339 K~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv 417 (508)
T KOG0275|consen 339 KCLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV 417 (508)
T ss_pred hhHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence 89999999999999999999988776 999999999999999999999875 34455566655 567888888999
Q ss_pred EEEECCCCeEEEEecC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCE
Q 002519 783 SILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 858 (913)
Q Consensus 783 ~i~D~~t~~~~~~l~~---h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~ 858 (913)
+|.++. |..++++.. ..+...+++.+|.|.++++.++| .++.|.+.++ ...+.+..|+..+..++-+|..+.
T Consensus 418 ~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNl 493 (508)
T KOG0275|consen 418 YIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNL 493 (508)
T ss_pred EEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccch
Confidence 999875 455555543 34567788899999999999999 8999999887 667788888999999999999999
Q ss_pred EEEEEcCCeEEEEE
Q 002519 859 LLVIGCYQSLELWN 872 (913)
Q Consensus 859 l~s~s~dg~I~iwd 872 (913)
|++-+.||.+++|.
T Consensus 494 lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 494 LASYSEDGLLKLWK 507 (508)
T ss_pred hhhhcccchhhhcC
Confidence 99999999999995
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-27 Score=249.90 Aligned_cols=241 Identities=33% Similarity=0.613 Sum_probs=215.1
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 706 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 706 (913)
..+..|...|.++.|++++++|++++.||.|++||+.+++.+..+..|...|.++.|++++.+|++++.|+.|++||+++
T Consensus 45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 124 (289)
T cd00200 45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124 (289)
T ss_pred EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 44567888999999999999999999999999999999888999999999999999999988899888899999999986
Q ss_pred CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEEEcCCeEE
Q 002519 707 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVS 783 (913)
Q Consensus 707 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~~~dg~I~ 783 (913)
......+..|...|.+++|+|++. ++++++.|+.|++||+++++.+..+.. .+..+.|++++..+++++.++.|+
T Consensus 125 -~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 202 (289)
T cd00200 125 -GKCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202 (289)
T ss_pred -cEEEEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEE
Confidence 667777888999999999999854 666777799999999998887776654 467789999999999999999999
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEE
Q 002519 784 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 862 (913)
Q Consensus 784 i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~ 862 (913)
+||+++++.+..+..|...|.+++|++++.++++++.+ .|++||+.++ ..+..+..+...+.+++|++++.+|+++
T Consensus 203 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 203 LWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLASG 279 (289)
T ss_pred EEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEEe
Confidence 99999999998888899999999999998899988856 9999999765 5666667788899999999999999999
Q ss_pred EcCCeEEEEE
Q 002519 863 GCYQSLELWN 872 (913)
Q Consensus 863 s~dg~I~iwd 872 (913)
+.|+.|++|+
T Consensus 280 ~~d~~i~iw~ 289 (289)
T cd00200 280 SADGTIRIWD 289 (289)
T ss_pred cCCCeEEecC
Confidence 9999999996
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=240.26 Aligned_cols=243 Identities=23% Similarity=0.373 Sum_probs=212.8
Q ss_pred eeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEE
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWD 703 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwd 703 (913)
...++++|.+.|..+.|.+|+..|++++.|++|+.||+++|+.++.+++|...|+.+.-+.-|. +|.+++.||+++|||
T Consensus 82 N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 82 NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWD 161 (338)
T ss_pred ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEe
Confidence 4456779999999999999999999999999999999999999999999999999998554444 567788899999999
Q ss_pred cCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEEEcCC
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAEN 780 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~~~dg 780 (913)
++. +..++++. ....++++.|...+..++ +|+-|+.|++||++......++.++ ++.+..++++..+++-+.|.
T Consensus 162 ~R~-k~~~~t~~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~ 238 (338)
T KOG0265|consen 162 IRK-KEAIKTFE-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDN 238 (338)
T ss_pred ecc-cchhhccc-cceeEEEEEeccccccee-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccc
Confidence 997 55666654 467899999998888776 9999999999999999999998875 56788999999999999999
Q ss_pred eEEEEECCCC----eEEEEecCCC----CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEE
Q 002519 781 VVSILDAETQ----ACRLSLQGHT----KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 781 ~I~i~D~~t~----~~~~~l~~h~----~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~ 851 (913)
++++||++-. +++..+.+|. .....++|+|+++.+.+++.| .+++||.... .++..+.+|.+.|.++.
T Consensus 239 tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~ 315 (338)
T KOG0265|consen 239 TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVD 315 (338)
T ss_pred eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc---cEEEEcCCcceeEEEee
Confidence 9999999864 5677777754 345678999999999999999 9999999654 78999999999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEEC
Q 002519 852 FHPTYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 852 ~sp~g~~l~s~s~dg~I~iwd~ 873 (913)
|+|....|++++.|.+|++=.+
T Consensus 316 Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 316 FHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred ecCCCcEEEEeccCceeEeecc
Confidence 9999999999999999987543
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-29 Score=257.14 Aligned_cols=279 Identities=18% Similarity=0.345 Sum_probs=234.7
Q ss_pred eeeeEeecCCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002519 624 KEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 702 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 702 (913)
..+..+.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+...++..++..|.+.|..|++.. ..+++++.|++|+.|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW 134 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence 4456789999999999999977 7899999999999999999999999999999999999987 789999999999999
Q ss_pred EcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEEE-c
Q 002519 703 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAA-A 778 (913)
Q Consensus 703 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~~-~ 778 (913)
.++. ..++++.+ ...+..|+-+.. ...++||+. .|.|||......+..+.- .+.++.|+|....+++++ +
T Consensus 135 k~~~--~p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s 208 (433)
T KOG0268|consen 135 KIDG--PPLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS 208 (433)
T ss_pred eccC--Ccceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeecc
Confidence 9985 36666654 455666766554 346668764 599999998888887764 346788999887766665 7
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 002519 779 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 857 (913)
Q Consensus 779 dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~ 857 (913)
|+.|.+||++...++..+. -.-.-+.|||+|++..|+++++| .++.||++... ..+.....|...|.++.|+|.|.
T Consensus 209 DrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred CCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcc
Confidence 9999999999998776654 23445789999988889999999 99999998653 56777788999999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEE--cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 858 SLLVIGCYQSLELWNMSENKTMTL--TAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 858 ~l~s~s~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.|++|+.|.+|+||.++.+....+ ...-..|.|+.|+-|.+||++||+|+.|++|+
T Consensus 286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 999999999999999988876522 23345799999999999999999999999996
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-29 Score=265.54 Aligned_cols=247 Identities=18% Similarity=0.311 Sum_probs=218.5
Q ss_pred CCceeeEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc
Q 002519 664 TLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 742 (913)
Q Consensus 664 ~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~ 742 (913)
..+.+.++.+|...|+++.|.| .+.+|++++.|+.|+||++...+.++++|.+|..+|.+++|+.+|..+| +++.|+.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~ 281 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRF 281 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeeccee
Confidence 3466788999999999999999 7889999999999999999988999999999999999999999998777 9999999
Q ss_pred EEEEEcCCCeeeEEeeC--CceEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 002519 743 IRYWSINNGSCTRVFKG--GTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 819 (913)
Q Consensus 743 I~iwdl~~~~~~~~~~~--~~~~v~~s~~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s 819 (913)
|++||+++|+++..|.. ...++.|.|++ +.+++|+.|+.|+.||+++++.+.++..|-+.|..|.|-++|+.+++.+
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999999875 45789999999 7888999999999999999999999999999999999999999999999
Q ss_pred CC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----EEcccC--CCeEEEE
Q 002519 820 ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----TLTAHE--GLIAALA 892 (913)
Q Consensus 820 ~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~----~~~~h~--~~V~~l~ 892 (913)
+| +++||+.+.+-..+.+.... .....+|..+|+++++++-+.|+.|.+|.+...-.+ .+.+|. +.-..|.
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred cCccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 99 99999998774444443332 345678899999999999999999999987654333 566664 4566789
Q ss_pred EeCCCCEEEEEeCCCcEEEeC
Q 002519 893 VSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 893 ~spdg~~Lasgs~DG~I~IWd 913 (913)
|||||++|++|+.||.|.+||
T Consensus 440 fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred EcCCCCeEEeecCCccEEEee
Confidence 999999999999999999997
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=265.38 Aligned_cols=241 Identities=25% Similarity=0.444 Sum_probs=208.6
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
.|.+|.++|+.|+|+|...++++|+.|.+|+||+.++.+++.++.+|-+.|..+.|++.-.+|+++|+|-+||||+..+
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs- 124 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS- 124 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-
Confidence 3557999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-----------------------------eEEee
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-----------------------------TRVFK 758 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-----------------------------~~~~~ 758 (913)
+.++..+.||...|.|..|+|..+ +|++++-|-+||+||+..-+. ...++
T Consensus 125 r~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 125 RKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred CceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence 889999999999999999999754 778999999999999863211 11223
Q ss_pred C---CceEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002519 759 G---GTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 832 (913)
Q Consensus 759 ~---~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~--~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~ 832 (913)
+ +++.++|+|....+++|+.|..|++|.....+ .+-+..+|.+.|.++-|+|.-++|++.++| +|+|||+...
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR- 282 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR- 282 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-
Confidence 3 45668899999999999999999999876543 455678999999999999999999999999 9999999765
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002519 833 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 833 ~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
..+..+......++.++.+|..+.+++ +.|+.+.||.+.
T Consensus 283 --t~v~tfrrendRFW~laahP~lNLfAA-gHDsGm~VFkle 321 (1202)
T KOG0292|consen 283 --TSVQTFRRENDRFWILAAHPELNLFAA-GHDSGMIVFKLE 321 (1202)
T ss_pred --cceeeeeccCCeEEEEEecCCcceeee-ecCCceEEEEEc
Confidence 777888777889999999999985555 455555555554
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=235.02 Aligned_cols=246 Identities=22% Similarity=0.389 Sum_probs=204.6
Q ss_pred cceeeeEe-ecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECC--CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCe
Q 002519 622 SFKEANSV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 698 (913)
Q Consensus 622 ~~~~~~~l-~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~ 698 (913)
++.++..+ .+|+..|+.|+|+|.|++||+|+.|.++.||.-. +.+++.++++|...|.|++|+++|++||+|+.|+.
T Consensus 49 s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS 128 (312)
T KOG0645|consen 49 SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKS 128 (312)
T ss_pred cEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe
Confidence 46666665 4799999999999999999999999999999876 56889999999999999999999999999999999
Q ss_pred EEEEEcCCC--CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC---CeeeEEeeCC---ceEEEEecCC
Q 002519 699 VRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRVFKGG---TAQMRFQPHL 770 (913)
Q Consensus 699 V~Iwdl~~~--~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~---~~~~~~~~~~---~~~v~~s~~~ 770 (913)
|.||.+..+ -.++..+.+|...|..+.|+|... ||++++.|++|++|+-.. -.++.++.++ +-++.|.+.|
T Consensus 129 VWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G 207 (312)
T KOG0645|consen 129 VWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG 207 (312)
T ss_pred EEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC
Confidence 999999843 356788999999999999999754 777999999999998772 2567777665 4568899999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC---Cce-EEEeecCCC
Q 002519 771 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE---GEC-VHELSCNGN 845 (913)
Q Consensus 771 ~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~---~~~-i~~~~~~~~ 845 (913)
.++++++.|++|+||-..+.-. ..|...++.+.|. ...|++++.| .|+||....... ... .+....|+.
T Consensus 208 ~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~ 281 (312)
T KOG0645|consen 208 SRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV 281 (312)
T ss_pred ceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc
Confidence 9999999999999998663211 2377889999998 4578888888 999998764311 111 224456788
Q ss_pred ceEEEEEeCC-CCEEEEEEcCCeEEEEECC
Q 002519 846 KFHSCVFHPT-YPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 846 ~i~~l~~sp~-g~~l~s~s~dg~I~iwd~~ 874 (913)
.|+++.|.|. .+.|++++.||.|++|.+.
T Consensus 282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999995 6789999999999999864
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=236.39 Aligned_cols=276 Identities=21% Similarity=0.373 Sum_probs=228.7
Q ss_pred EEEEEEecC-CCEEEEEe-------CCCcEEEEECCCCceeeEec--cCCCCeEEEEECCCC-CEEEEEeCCCeEEEEEc
Q 002519 636 VICCHFSSD-GKLLATGG-------HDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSM-PRLATSSFDKTVRVWDA 704 (913)
Q Consensus 636 V~~l~fspd-g~~Lasgs-------~Dg~V~vwd~~~~~~~~~l~--~h~~~V~~l~fspdg-~~Lasgs~Dg~V~Iwdl 704 (913)
=+++.|||- ..+||++. ..|++.|.++...+-+..+. .-.+.+.+|+|+++. +.+++++.||+++|||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 357889882 23444432 36899999997444444433 346779999999874 57889999999999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceE---EEEecCC-CEEEEEEcCC
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHL-GRYLAAAAEN 780 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~---v~~s~~~-~~ll~~~~dg 780 (913)
..+..++..++.|..+|.++.|++..+..+++++.|++|++|+......+.+|+++..+ ..|+|.. +.+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 88788999999999999999999988888889999999999999999999999987654 5688876 4566677799
Q ss_pred eEEEEECCCCeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC-C
Q 002519 781 VVSILDAETQACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-P 857 (913)
Q Consensus 781 ~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd-g~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g-~ 857 (913)
.+++||++.......+..|...|.++.|+.. .++|++++.| .|++||+++-+ ..+.++.+|+..|..+.|+|.. .
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhh
Confidence 9999999987555559999999999999984 5588999999 99999998764 5688889999999999999965 4
Q ss_pred EEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeC-CCCEEEEEeCCCcEEEeC
Q 002519 858 SLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK 913 (913)
Q Consensus 858 ~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~sp-dg~~Lasgs~DG~I~IWd 913 (913)
.|++++.|-+++|||....... +...|..-|..+.|++ +..++|+++.|+.++||+
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 6778888889999998855433 6678899999999987 567999999999999996
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=252.26 Aligned_cols=274 Identities=19% Similarity=0.306 Sum_probs=238.5
Q ss_pred CCCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 002519 633 TSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 633 ~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
.+.|.+++|+|... -+|+.+ .-.|.||+..+...++++......|++++|..||++|++|...|.|+|||+.+ ...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence 46799999999543 344433 45799999999888888888999999999999999999999999999999665 6678
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCC-EEEEEEcCCeEEEEEC
Q 002519 712 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLG-RYLAAAAENVVSILDA 787 (913)
Q Consensus 712 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~-~ll~~~~dg~I~i~D~ 787 (913)
+.+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+.++ +.+..|+|-.+ .+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 9999999999999999999999999999999999999998875566554 45667888766 5667778999999999
Q ss_pred CCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 002519 788 ETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 866 (913)
Q Consensus 788 ~t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg 866 (913)
+.. ..+.++. |..+|.+++|-|.|..|++++...|+|||+.+|. ..+.....|...|+|+++..++..|++++-|+
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 998 5566655 9999999999999999999999999999998764 44445555889999999999999999999999
Q ss_pred eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 867 SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 867 ~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
.|++||+.+-+.+.-....++|.+++.+|++..++.|..||.+.+
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999998888888888999999999999999999999998754
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=229.81 Aligned_cols=265 Identities=24% Similarity=0.346 Sum_probs=229.4
Q ss_pred ceEEEEcCCCccccCCCC---eEEeCCCcchhhhcccccccCCccCceeeecccCCCCCCCCCCcccccccCccceeeeE
Q 002519 552 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 628 (913)
Q Consensus 552 ~~~~~s~dg~~~~~~~~~---~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~ 628 (913)
-.+.|.-||.|+++.++. ++|++..| .++++
T Consensus 21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg----------------------------------------------~likt 54 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRG----------------------------------------------ALIKT 54 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEEeeccccc----------------------------------------------ceeee
Confidence 367888899998886544 66766544 35677
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC-
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP- 707 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~- 707 (913)
+.+|...|.+++.+.|...|++|+.|+.|.+||+.+|+.++.+.+|.+.|+.|+|+.+...+++|+.|.+|++||.++.
T Consensus 55 YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s 134 (307)
T KOG0316|consen 55 YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS 134 (307)
T ss_pred ecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-CCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-~~~~~v~~s~~~~~ll~~~~dg~I~i~D 786 (913)
.+++..+....+.|.+|... ++.|++|+.||+++.||++.+.....+- .++++++|+++++..++++.|++|++.|
T Consensus 135 ~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 135 FEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred CCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence 35678888888999999997 4477799999999999999998876654 4789999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCC--eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCc-eEEEEEeCCCCEEEEE
Q 002519 787 AETQACRLSLQGHTKP--IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK-FHSCVFHPTYPSLLVI 862 (913)
Q Consensus 787 ~~t~~~~~~l~~h~~~--V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~-i~~l~~sp~g~~l~s~ 862 (913)
-++++.+..+++|... -..+++.....++++|++| .|++||+... ..+..+..+... +.++.++|.-..|+++
T Consensus 212 k~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~sk~~~~~~v~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 212 KETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQISKLSVVSTVIVTDLSCHPTMDDFITA 288 (307)
T ss_pred cchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeeeeeccCCceeEEeeecccCccceeEe
Confidence 9999999999999765 3456777778899999999 9999999765 667777776666 8999999998888887
Q ss_pred EcCCeE
Q 002519 863 GCYQSL 868 (913)
Q Consensus 863 s~dg~I 868 (913)
...+.+
T Consensus 289 ~~~~~~ 294 (307)
T KOG0316|consen 289 TGHGDL 294 (307)
T ss_pred cCCcee
Confidence 665433
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=269.46 Aligned_cols=243 Identities=22% Similarity=0.331 Sum_probs=201.0
Q ss_pred eeEee-cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC--------------------------------C-------
Q 002519 626 ANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--------------------------------L------- 665 (913)
Q Consensus 626 ~~~l~-~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~--------------------------------~------- 665 (913)
...+. +|.+.|+|+.||+||+|||+||.||.|+||.+.. .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 33455 8999999999999999999999999999997644 0
Q ss_pred ---------------------ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEE
Q 002519 666 ---------------------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 724 (913)
Q Consensus 666 ---------------------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl 724 (913)
+++..|.||.+.|.+|.|+.++ +|+++|.|++||+|++.. ..++++|. |.+.|+||
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVTCV 415 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC-cceeeEEe-cCCeeEEE
Confidence 1123456899999999999765 999999999999999997 78888886 99999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--eCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC--C-
Q 002519 725 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H- 799 (913)
Q Consensus 725 ~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~--h- 799 (913)
+|+|.++++|++|+-||.||||+|...+.+... +.-++.++|.|+|...++|+.+|.+++|+.+..+....+.. |
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 999998999999999999999999988877654 45678999999999999999999999999998876654432 1
Q ss_pred -----CCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCCceEEEeecCC--CceEEEEEeCCCCEEEEEEcCCeEEE
Q 002519 800 -----TKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNG--NKFHSCVFHPTYPSLLVIGCYQSLEL 870 (913)
Q Consensus 800 -----~~~V~sl~~spdg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~--~~i~~l~~sp~g~~l~s~s~dg~I~i 870 (913)
...|+.+.|.|... .|++.+.| .|+|||.+.. ..+..+++.. ..-....|+.||++|++++.|..|+|
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 22799999998443 46666666 9999999665 4455555432 23456789999999999999999999
Q ss_pred EECC
Q 002519 871 WNMS 874 (913)
Q Consensus 871 wd~~ 874 (913)
|++.
T Consensus 573 W~~~ 576 (712)
T KOG0283|consen 573 WKND 576 (712)
T ss_pred EeCC
Confidence 9973
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=268.15 Aligned_cols=270 Identities=27% Similarity=0.476 Sum_probs=237.8
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeE-eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 709 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 709 (913)
.|...|.|..|. +.++++++.|.+|++||..++..+.. +.+|.+.|++++|...+.+|++|+.|.+++|||+.+ +.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-g~ 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST-GE 282 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC-Cc
Confidence 367788888888 55899999999999999999999988 999999999999988788999999999999999887 89
Q ss_pred eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEE-EecCCCEEEEEEcCCeEEEEECC
Q 002519 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHLGRYLAAAAENVVSILDAE 788 (913)
Q Consensus 710 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~-~s~~~~~ll~~~~dg~I~i~D~~ 788 (913)
+..++.+|.+.|.++...+. ++++|+.|.+|++|++.++.++..+.++...|. ...+++.+++++.|+.|.+||+.
T Consensus 283 C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhh
Confidence 99999999999999998743 677899999999999999999999886544332 34448899999999999999999
Q ss_pred CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 002519 789 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 867 (913)
Q Consensus 789 t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~ 867 (913)
++++++++.+|...|.++.+... .++++|+.| +|++||+++.. +|+..+..|...+..+.+ .+++|++++.|++
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~ 434 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT 434 (537)
T ss_pred hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccccc
Confidence 99999999999999999988765 899999999 99999998754 788999998888865554 5678999999999
Q ss_pred EEEEECCCCcEE-EEcc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 868 LELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 868 I~iwd~~~~~~~-~~~~-h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|++||..+++++ .+.+ |...|.++++. ...+++++.||.+++||
T Consensus 435 Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 435 IKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred EEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 999999999988 5555 56889998886 45788999999999997
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-27 Score=244.67 Aligned_cols=276 Identities=24% Similarity=0.389 Sum_probs=242.3
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 712 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 712 (913)
...|+++...+....+++|+.|+.+.++|......+.+++||...|+.+.|+++...+++++.|..|+||.... .....
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~ 297 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPT 297 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCcc
Confidence 35688888888778999999999999999999999999999999999999999999999999999999999987 44667
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC-----ceEEEEecCCCEEEEEEcCCeEEEEEC
Q 002519 713 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-----TAQMRFQPHLGRYLAAAAENVVSILDA 787 (913)
Q Consensus 713 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-----~~~v~~s~~~~~ll~~~~dg~I~i~D~ 787 (913)
....|..+|+.+..+|.|+++| +++.|+++.+.|++++.++...... ..+..|+|||-.|.++..|+.|+|||+
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 7778999999999999998766 9999999999999999988776543 677899999999999999999999999
Q ss_pred CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 002519 788 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 866 (913)
Q Consensus 788 ~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg 866 (913)
.+...+..|.+|+++|..|.|+.+|.||+++++| .|++||+|.....+.+.. .....+.+++|...|.++++++.+=
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l--~~~~~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL--DEKKEVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec--cccccceeEEEcCCCCeEEeeccee
Confidence 9999999999999999999999999999999999 799999987643333222 1233699999999999999998887
Q ss_pred eEEEEECCCCc--EE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 867 SLELWNMSENK--TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 867 ~I~iwd~~~~~--~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
.|++++-.+.. ++ .+..|.+..+++.|.....+++++|.|..++|+
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 77777755443 33 667788899999999999999999999999887
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=247.35 Aligned_cols=248 Identities=20% Similarity=0.288 Sum_probs=213.8
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVR 700 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~ 700 (913)
.++.++++.+|..+|..|.||||.++|++|+.|..+++||+.+|.....+. +|...+.+++|.|||..+++|+.|+.|.
T Consensus 258 ~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 258 HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence 578899999999999999999999999999999999999999999888776 3568899999999999999999999999
Q ss_pred EEEcCCCCceeEEeccCC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--eCCceEEEEecCCCEEEEEE
Q 002519 701 VWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ll~~~ 777 (913)
.||++. ..+..+.+-. -.|.+++..+||+.++ +.+.|..|++|+.++..++..+ ..++.+++.+.++.++++.-
T Consensus 338 ~wdlDg--n~~~~W~gvr~~~v~dlait~Dgk~vl-~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 338 MWDLDG--NILGNWEGVRDPKVHDLAITYDGKYVL-LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred EecCCc--chhhcccccccceeEEEEEcCCCcEEE-EEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEc
Confidence 999984 4444444432 5699999999999877 5557999999999887666443 34678899999999999999
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCC--eEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEe
Q 002519 778 AENVVSILDAETQACRLSLQGHTKP--IDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 853 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~~h~~~--V~sl~~sp-dg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~s 853 (913)
.+..|++||++..+.+..+.||... |..-||-- +..++++|++| .|+||+..++ +.+.++.+|...|++++|+
T Consensus 415 ~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kll~~LsGHs~~vNcVswN 491 (519)
T KOG0293|consen 415 QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KLLAVLSGHSKTVNCVSWN 491 (519)
T ss_pred ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ceeEeecCCcceeeEEecC
Confidence 9999999999999999999998764 44446655 44799999999 9999999887 8999999999999999999
Q ss_pred CCC-CEEEEEEcCCeEEEEECCC
Q 002519 854 PTY-PSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 854 p~g-~~l~s~s~dg~I~iwd~~~ 875 (913)
|.. .++++++.||+|+||....
T Consensus 492 P~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 492 PADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCHHHhhccCCCCeEEEecCCc
Confidence 966 4688889999999998754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-26 Score=260.93 Aligned_cols=247 Identities=15% Similarity=0.189 Sum_probs=200.4
Q ss_pred EeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEEcCCCCc-------eeEEeccCCCCeE
Q 002519 651 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGY-------SLRTFMGHSASVM 722 (913)
Q Consensus 651 gs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~Iwdl~~~~~-------~~~~~~~h~~~V~ 722 (913)
|+.++.|+||+......+..+.+|.+.|.+|+|+|+ +.+|++|+.||+|+|||+.+.+. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667889999999888888999999999999999997 78999999999999999986332 3456788999999
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC
Q 002519 723 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 800 (913)
Q Consensus 723 sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~ 800 (913)
+|+|+|++..+|++++.|++|+|||++++..+..+. ..+.++.|++++..+++++.|+.|+|||+++++.+.++.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 999999988888899999999999999988666553 457789999999999999999999999999999999999998
Q ss_pred CCeEE-----EEEcCCCCEEEEEeCC-----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 002519 801 KPIDS-----VCWDPSGELLASVSED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 870 (913)
Q Consensus 801 ~~V~s-----l~~spdg~~l~s~s~d-----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~i 870 (913)
+.+.+ ..|++++.+|++++.+ .|+|||++..........+..+...+......+++.++++|+.|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 76543 2345888888887755 5999999865433333344444444444445566888999999999999
Q ss_pred EECCCCcEEEE--cccCCCeEEEEEeCCC
Q 002519 871 WNMSENKTMTL--TAHEGLIAALAVSTET 897 (913)
Q Consensus 871 wd~~~~~~~~~--~~h~~~V~~l~~spdg 897 (913)
|++..+....+ ..+..++.+++|.|..
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEcccc
Confidence 99988765433 3366788999999964
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-26 Score=280.20 Aligned_cols=238 Identities=18% Similarity=0.262 Sum_probs=199.3
Q ss_pred CCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcCCCCce
Q 002519 633 TSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYS 710 (913)
Q Consensus 633 ~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~~~ 710 (913)
...|.+++|++ ++.+||+++.||+|+|||+.+++.+..+.+|...|++|+|+| ++.+|++|+.||+|+|||+++ +..
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~ 610 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVS 610 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcE
Confidence 46799999987 578999999999999999999999999999999999999996 788999999999999999987 566
Q ss_pred eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeeC---CceEEEEecCCCEEEEEEcCCeEEEEE
Q 002519 711 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 711 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~~---~~~~v~~s~~~~~ll~~~~dg~I~i~D 786 (913)
+..+..+ ..|.++.|++....+|++|+.||.|++||+++.+ .+..+.+ .+..+.|. ++..+++++.|+.|++||
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEe
Confidence 6666644 6799999976656677899999999999998765 3444433 45677786 678899999999999999
Q ss_pred CCC------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCce--------E--EEeecCCCceEE
Q 002519 787 AET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC--------V--HELSCNGNKFHS 849 (913)
Q Consensus 787 ~~t------~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~--------i--~~~~~~~~~i~~ 849 (913)
++. ..++..+.+|...+.+++|++++.+|++|+.| .|+||+......... + .....+...|.+
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 975 35778899999999999999999999999999 999999865421100 0 011234556999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEEC
Q 002519 850 CVFHPTYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 850 l~~sp~g~~l~s~s~dg~I~iwd~ 873 (913)
++|++++..|++++.+|.|+||++
T Consensus 769 v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999996
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=257.99 Aligned_cols=263 Identities=15% Similarity=0.230 Sum_probs=207.1
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee-------------eEeccCCCCeEEEEECC-CCCEEEEEeCCC
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-------------TNLEEHSSLITDVRFSP-SMPRLATSSFDK 697 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~-------------~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg 697 (913)
|...|....+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++.+|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3445666666777666677666666666765433221 24778999999999999 888999999999
Q ss_pred eEEEEEcCCCC------ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEec
Q 002519 698 TVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQP 768 (913)
Q Consensus 698 ~V~Iwdl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~ 768 (913)
+|+|||+.+.+ ..+..+.+|...|.+|+|+|++..+|++++.|++|+|||+++++.+..+.+ .+.+++|++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 99999997643 356788899999999999999877888999999999999999988877754 467899999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC-eEEEEEcCCCCEEEEEe----CC-eEEEEECCCCCCCceEEEeec
Q 002519 769 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVS----ED-SVRVWTVGSGSEGECVHELSC 842 (913)
Q Consensus 769 ~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~-V~sl~~spdg~~l~s~s----~d-~I~vwdl~~~~~~~~i~~~~~ 842 (913)
++..+++++.|+.|+|||+++++.+..+.+|... +..+.|.+++.+|++++ .| .|++||+++... .+.....
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~ 256 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDL 256 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEecc
Confidence 9999999999999999999999999999988765 45678999888777654 34 899999987543 2332222
Q ss_pred -CCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEE--cccCCCeEEEEEeCC
Q 002519 843 -NGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTL--TAHEGLIAALAVSTE 896 (913)
Q Consensus 843 -~~~~i~~l~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~spd 896 (913)
....+..+.|++++.+|++++ .|+.|++||+.+++.+.. ..+...+.+++|.|.
T Consensus 257 d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 257 DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 234566677999999999888 599999999999887633 235567788888774
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=266.26 Aligned_cols=277 Identities=20% Similarity=0.330 Sum_probs=234.1
Q ss_pred CCCCEEEEEEecCCCEEEEEe--CCCcEEEEECCC------------CceeeEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002519 632 STSKVICCHFSSDGKLLATGG--HDKKAVLWHTDT------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 697 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs--~Dg~V~vwd~~~------------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 697 (913)
+...|.+|+.+|||..+|||+ .||.++||+.+. .+.+.+...|.+.|+|+.|++||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 445699999999999999999 999999998652 234456678999999999999999999999999
Q ss_pred eEEEEEcCC------C-----------CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC
Q 002519 698 TVRVWDADN------P-----------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 760 (913)
Q Consensus 698 ~V~Iwdl~~------~-----------~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~ 760 (913)
.|.||+... . -+++..+.+|+..|.+++|+|++. ++++++.|++|.|||.++.+++++++++
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeeecc
Confidence 999999872 1 125678889999999999999755 7779999999999999999998888775
Q ss_pred ---ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC------CCeEEEEEcCCCCEEEEEeC----C-eEEEE
Q 002519 761 ---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT------KPIDSVCWDPSGELLASVSE----D-SVRVW 826 (913)
Q Consensus 761 ---~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~------~~V~sl~~spdg~~l~s~s~----d-~I~vw 826 (913)
+..+.|.|-|.++++-+.|++|+||++.+..+.+.+.++. ..+..+.|+|||.+|++... . ++.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 5678999999999999999999999988877777776543 35788999999999998642 2 78888
Q ss_pred ECCCCCCCceEEEeecCCCceEEEEEeCC-------------CC----EEEEEEcCCeEEEEECCCCcEEE--EcccCCC
Q 002519 827 TVGSGSEGECVHELSCNGNKFHSCVFHPT-------------YP----SLLVIGCYQSLELWNMSENKTMT--LTAHEGL 887 (913)
Q Consensus 827 dl~~~~~~~~i~~~~~~~~~i~~l~~sp~-------------g~----~l~s~s~dg~I~iwd~~~~~~~~--~~~h~~~ 887 (913)
+..+ .++-..+-+|..++.++.|+|. +. .+++|+.|++|.||.....+.+. ..-....
T Consensus 251 eR~t---Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~S 327 (942)
T KOG0973|consen 251 ERGT---WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKS 327 (942)
T ss_pred ecCC---ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCc
Confidence 8744 3677788899999999999882 11 57888999999999998777663 3345678
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 888 IAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 888 V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
|.+++|+|||..|+.||.||+|.++
T Consensus 328 I~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 328 IVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred eeeeeEcCCCCeEEEEecCCeEEEE
Confidence 9999999999999999999999886
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=233.74 Aligned_cols=250 Identities=19% Similarity=0.270 Sum_probs=223.3
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
.-+.+|.+|.+.|+..+++.+..+.|+++.|-+.+|||.-++..+..|. |...|.+++|+.|.++|++|+.++.+||||
T Consensus 50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFD 128 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhh
Confidence 3467899999999999999999999999999999999999999999885 888999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--eCCceEEEEecCCCEEEEEEcCCe
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENV 781 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ll~~~~dg~ 781 (913)
++.+..+...+.+|.+.|..+.|+.....+| +..+|++||+||.++++.+..+ +.++.++.+++++ .+++.+..+.
T Consensus 129 ln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG-~ilTia~gss 206 (334)
T KOG0278|consen 129 LNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG-RILTIAYGSS 206 (334)
T ss_pred ccCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCC-CEEEEecCce
Confidence 9998888999999999999999998877666 7789999999999999988875 4578889999884 5667777889
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEE
Q 002519 782 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 860 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~ 860 (913)
|.+||..+...++.++ -...|.+...+|+..++++|++| .++.||+.++.+..+. .++|.++|.|+.|+|+|...+
T Consensus 207 V~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~yA 283 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGELYA 283 (334)
T ss_pred eEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCceee
Confidence 9999999998888776 35678999999999999999999 9999999998554442 488999999999999999999
Q ss_pred EEEcCCeEEEEECCCCcEE
Q 002519 861 VIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 861 s~s~dg~I~iwd~~~~~~~ 879 (913)
+|+.||+|+||-...++..
T Consensus 284 sGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 284 SGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ccCCCceEEEEEecCCCch
Confidence 9999999999998776544
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-26 Score=252.70 Aligned_cols=265 Identities=23% Similarity=0.449 Sum_probs=226.9
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEecc-C
Q 002519 639 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-H 717 (913)
Q Consensus 639 l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~-h 717 (913)
+.|+ ....||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||+.+ .+.++.+.+ |
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-~k~~~~~~~~h 259 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-QKKTRTLRGSH 259 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh-ccccccccCCc
Confidence 5676 344677764 55899999999987777766689999999999999999999999999999987 666777777 9
Q ss_pred CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-eeC---CceEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 002519 718 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACR 793 (913)
Q Consensus 718 ~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~-~~~---~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~ 793 (913)
...|-+++|. ..++.+|+.|+.|..+|++....... +.+ .+..+.|++++.++++++.|+.+.|||.....++
T Consensus 260 ~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 260 ASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 9999999998 34777999999999999998765444 333 4566789999999999999999999999999999
Q ss_pred EEecCCCCCeEEEEEcCC-CCEEEEEe--CC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC--Ce
Q 002519 794 LSLQGHTKPIDSVCWDPS-GELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY--QS 867 (913)
Q Consensus 794 ~~l~~h~~~V~sl~~spd-g~~l~s~s--~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d--g~ 867 (913)
..+..|...|..++|+|- ..+||+|+ .| .|++||+.++. .+..+.. ...|..+.|++..+.|+++... +.
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~---~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA---RIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc---Eeccccc-CCceeeEEEcCCCCEEEEecCCCCCc
Confidence 999999999999999994 45888876 45 99999999874 4443332 7889999999999888887654 58
Q ss_pred EEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 868 LELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 868 I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|.||++.+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 999999988776 8889999999999999999999999999999996
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=232.63 Aligned_cols=287 Identities=17% Similarity=0.322 Sum_probs=242.7
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
.+..++.+.+|.+.|+.++....-..+.+++.|.+.+||.+++++++.++.+|.+.|++|+|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 56778889999999999999887789999999999999999999999999999999999999999999999999999999
Q ss_pred EEc------CC-----------------------------C----CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc
Q 002519 702 WDA------DN-----------------------------P----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 742 (913)
Q Consensus 702 wdl------~~-----------------------------~----~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~ 742 (913)
|.. .. . ..++..+.+|...|.+..|...+..++ +++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v-TaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV-TASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceee-eeecccc
Confidence 972 10 0 013556789999999999998877655 9999999
Q ss_pred EEEEEcCCCeeeEEeeCCc---eEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 002519 743 IRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASV 818 (913)
Q Consensus 743 I~iwdl~~~~~~~~~~~~~---~~v~~s~~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~ 818 (913)
..+||++++..+..+.++. +.++-+|....+++++.|.++++||.+.. ..+..|.+|.+.|+++.|.-+. .+++|
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeec
Confidence 9999999999999988765 44566777778888888999999999965 5678899999999999998654 57789
Q ss_pred eCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-----EcccCCCeEEEE
Q 002519 819 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-----LTAHEGLIAALA 892 (913)
Q Consensus 819 s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~-----~~~h~~~V~~l~ 892 (913)
++| +|+|||+++.. ..+..+.. ..+++.++++..++.|+.--.+..|++||+...++.. ..+|...|.|++
T Consensus 375 SDDrTvKvWdLrNMR--splATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR--SPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeecccc--Ccceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 999 99999998653 33333333 6788899999888888888888899999999887653 347999999999
Q ss_pred EeCCCC--EEEEEeCCCcEEEeC
Q 002519 893 VSTETG--YVASASHDKFVKLWK 913 (913)
Q Consensus 893 ~spdg~--~Lasgs~DG~I~IWd 913 (913)
|..+-. -|++|+.|..+.=|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 976543 478999999998885
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-26 Score=228.09 Aligned_cols=271 Identities=16% Similarity=0.277 Sum_probs=222.4
Q ss_pred cCCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCC-Ccee-eEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 631 ASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSK-TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 631 ~H~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~-~~~~-~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
.-.+.|.+|+||| ...+|++|+.|++||+|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S- 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS- 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC-
Confidence 4567899999999 556777999999999999985 3332 44567999999999999999999999999999999998
Q ss_pred CceeEEeccCCCCeEEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~-~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D 786 (913)
+ -+..+..|.++|.++.|-+... .+|++|+.|.+|++||.+....+..+.-+..+.+.......++++..++.|.+|+
T Consensus 104 ~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 104 G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN 182 (347)
T ss_pred C-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence 3 4667778999999999987543 4778999999999999999999988887777777777778899999999999999
Q ss_pred CCCCeEEEE-ecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCC---------CceEEEEEeC
Q 002519 787 AETQACRLS-LQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---------NKFHSCVFHP 854 (913)
Q Consensus 787 ~~t~~~~~~-l~~-h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~---------~~i~~l~~sp 854 (913)
++.+...+. +.. -.-.++||+...|....+.|+-+ .+.|..+..+.. +.-..+++|. ..|++++|+|
T Consensus 183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred cCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeec
Confidence 987643222 111 22348899999888877888877 888888876533 4445555554 2478899999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEe
Q 002519 855 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS 904 (913)
Q Consensus 855 ~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs 904 (913)
....|++++.||++.+||-.....+ ....|..+|+|++|+.+|.++|.+.
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 9999999999999999999877665 6688999999999999999887653
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-26 Score=225.11 Aligned_cols=248 Identities=21% Similarity=0.339 Sum_probs=205.8
Q ss_pred cceeeeEeecCCCCEEEEEEecCC-CEEEEEeCCCcEEEEECC-CCceeeEeccCCCCeEEEEECCCC-CEEEEEeCCCe
Q 002519 622 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKT 698 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~ 698 (913)
.+.+...+. -.+.+.+++|+++. ..+++++.||+++|||+. ...++..++.|...|.++.|++.. ..++++|.|++
T Consensus 50 gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~T 128 (311)
T KOG0277|consen 50 GIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGT 128 (311)
T ss_pred CeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCc
Confidence 444555554 35679999999954 688889999999999976 456888999999999999999854 46788899999
Q ss_pred EEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCE-EE
Q 002519 699 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGR-YL 774 (913)
Q Consensus 699 V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~-ll 774 (913)
|++|+... ...+.+|.+|...|....|+|....++++++.|+++++||++.......++. .+.++.|+..+.. ++
T Consensus 129 iKLW~~~r-~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~ 207 (311)
T KOG0277|consen 129 IKLWDPNR-PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLA 207 (311)
T ss_pred eEeecCCC-CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEE
Confidence 99999987 6778999999999999999999999999999999999999987543333544 4456667766654 55
Q ss_pred EEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEE
Q 002519 775 AAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~ 851 (913)
+++.|+.|++||+++- .++.++.+|.-.|+.|+|+|... +|++++.| +++|||..... .++.....|..-+..+.
T Consensus 208 Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~D 285 (311)
T KOG0277|consen 208 TGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLD 285 (311)
T ss_pred ecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEeccc
Confidence 5667999999999986 67889999999999999999655 99999999 99999997543 45666677788888888
Q ss_pred EeC-CCCEEEEEEcCCeEEEEEC
Q 002519 852 FHP-TYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 852 ~sp-~g~~l~s~s~dg~I~iwd~ 873 (913)
|++ +...++.++.|+.++||+-
T Consensus 286 ws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 286 WSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccccCceeeecccccceeeecc
Confidence 887 5668999999999999984
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=239.56 Aligned_cols=237 Identities=22% Similarity=0.286 Sum_probs=203.8
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEEcCCCCcee
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
.+.|++++|-.||++||+|+..|.|+|||..+...++.+.+|..+|..+.|+|.+. .|++|++|+.+++||+.+ ....
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-a~v~ 146 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-AYVQ 146 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-cEEE
Confidence 35699999999999999999999999999877778889999999999999999655 678888899999999998 5556
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeeEEeeC--CceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002519 712 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAE 788 (913)
Q Consensus 712 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~~--~~~~v~~s~~~~~ll~~~~dg~I~i~D~~ 788 (913)
..+.+|++.|.|.+|+|-.+++++||+.||.|++||++.. ..+..+.. ++..+.+.|.+..+++ +..+.|++||+.
T Consensus 147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~ias-AgGn~vkVWDl~ 225 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIAS-AGGNSVKVWDLT 225 (487)
T ss_pred EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEE-cCCCeEEEEEec
Confidence 7889999999999999999999999999999999999987 55666653 5678888888666554 556789999999
Q ss_pred CC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 002519 789 TQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 866 (913)
Q Consensus 789 t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg 866 (913)
+| +.+..+..|...|+|+++..++..|++++-| .|+|||+.+. +.++.+.- .++|.+|+.+|++..+++|..+|
T Consensus 226 ~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 226 TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred CCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeeec-ccceeeEEecCCCceEEEecccc
Confidence 66 5555566699999999999999999999999 9999997544 66666655 77899999999999999999999
Q ss_pred eEEEEECCC
Q 002519 867 SLELWNMSE 875 (913)
Q Consensus 867 ~I~iwd~~~ 875 (913)
.+.+-+...
T Consensus 302 lv~~rr~~~ 310 (487)
T KOG0310|consen 302 LVSIRRREV 310 (487)
T ss_pred eeeeehhhc
Confidence 887775433
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-24 Score=207.00 Aligned_cols=287 Identities=21% Similarity=0.302 Sum_probs=234.9
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC---------------ceeeEeccCCCCeEEEEECCC
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---------------KSKTNLEEHSSLITDVRFSPS 686 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~---------------~~~~~l~~h~~~V~~l~fspd 686 (913)
.|..+..++ .+..|.+++|.|.|.+.|+|+..++++|.-.... ...+.-+.|.+.|.|++|+|+
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 455555554 5668999999999999999999999998743211 112234568999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCC----ceeEEeccCCCCeEEEEEcCC---CCeEEEEEe-CCCcEEEEEcCCCeeeEEee
Q 002519 687 MPRLATSSFDKTVRVWDADNPG----YSLRTFMGHSASVMSLDFHPN---KDDLICSCD-GDGEIRYWSINNGSCTRVFK 758 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~----~~~~~~~~h~~~V~sl~fsp~---~~~ll~sgs-~Dg~I~iwdl~~~~~~~~~~ 758 (913)
|.+|++|+.|++|++..++... ..-..|.-|.+.|..++|..+ +..++++++ .|..|++-|..++.....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 9999999999999998776522 123456779999999999654 445665554 57888899999998888887
Q ss_pred CCceEE-E-EecCCCEEEEEEcCCeEEEEECCCCeEEEEecC--C-----CCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002519 759 GGTAQM-R-FQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H-----TKPIDSVCWDPSGELLASVSED-SVRVWTV 828 (913)
Q Consensus 759 ~~~~~v-~-~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~--h-----~~~V~sl~~spdg~~l~s~s~d-~I~vwdl 828 (913)
++...+ + ++.++-.+++++.|.+|++||++-..++.++.. | ...|.+++..|.|++|++|..| ...+||+
T Consensus 181 ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 181 GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 766443 2 455556677778899999999999988887753 2 3569999999999999999999 9999999
Q ss_pred CCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-----cEEEEcccCCCeEEEEEeCCCCEEEEE
Q 002519 829 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN-----KTMTLTAHEGLIAALAVSTETGYVASA 903 (913)
Q Consensus 829 ~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~-----~~~~~~~h~~~V~~l~~spdg~~Lasg 903 (913)
+.+ ..+..+..|...|.++.|+|...++++++.|..|++-|+... ..+.+..|...+..+.|+|..--+++.
T Consensus 261 rg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 261 RGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred eCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 887 788889999999999999999999999999999999998654 234667899999999999999889999
Q ss_pred eCCCcEEEe
Q 002519 904 SHDKFVKLW 912 (913)
Q Consensus 904 s~DG~I~IW 912 (913)
+.|.++.+|
T Consensus 338 sadkt~tlw 346 (350)
T KOG0641|consen 338 SADKTATLW 346 (350)
T ss_pred cCcceEEEe
Confidence 999999999
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=224.03 Aligned_cols=264 Identities=18% Similarity=0.306 Sum_probs=219.5
Q ss_pred CccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCCC
Q 002519 620 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDK 697 (913)
Q Consensus 620 ~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg 697 (913)
.+++.....+..|.+.|+|++.+ +.++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|+.||
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred ceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC
Confidence 34677888899999999999985 88999999999999999999999999999999999999998876 899999999
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--eCCceEEEEecCCCEEEE
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLA 775 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ll~ 775 (913)
.|.+|++.. -.++.++++|.+.|+.|+.+|.++ |.++.+.|+.+++||+-+++.-... +.....+.|++.|.+|++
T Consensus 108 ~i~iw~~~~-W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 108 HIIIWRVGS-WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV 185 (362)
T ss_pred cEEEEEcCC-eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence 999999987 688999999999999999999977 5668889999999999998765544 445566999999888877
Q ss_pred EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEE--
Q 002519 776 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF-- 852 (913)
Q Consensus 776 ~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~-- 852 (913)
+.. +.|-||.+++-.....+.. ...+.|+.|. ++.+|++|.++ .|++||..+. .+..++..|...|-.+.+
T Consensus 186 ~~~-~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~ 259 (362)
T KOG0294|consen 186 SGR-NKIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSD---TPLTEFLAHENRVKDIASYT 259 (362)
T ss_pred Eec-cEEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCC---ccceeeecchhheeeeEEEe
Confidence 665 5678888887665555542 3557777776 45567777777 9999999764 888999999999999874
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCC-----cEEEEcccCCCeEEEEE
Q 002519 853 HPTYPSLLVIGCYQSLELWNMSEN-----KTMTLTAHEGLIAALAV 893 (913)
Q Consensus 853 sp~g~~l~s~s~dg~I~iwd~~~~-----~~~~~~~h~~~V~~l~~ 893 (913)
.|++.+|++++.||.|+|||++.. +.+........++|+..
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred cCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeee
Confidence 567889999999999999999876 33333444666777655
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=251.32 Aligned_cols=268 Identities=22% Similarity=0.383 Sum_probs=231.2
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCc------eeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC-ceeEEec
Q 002519 643 SDGKLLATGGHDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFM 715 (913)
Q Consensus 643 pdg~~Lasgs~Dg~V~vwd~~~~~------~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~-~~~~~~~ 715 (913)
|.+++|++||.||.|++|++.... ....++.|.+.|.++....+++.|+++|.|-+|++|+..... .+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 467789999999999999987322 366788999999999999999999999999999999998754 7788899
Q ss_pred cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eeEEe------------eCCceEEEEecCCCEEEEEEcCCe
Q 002519 716 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVF------------KGGTAQMRFQPHLGRYLAAAAENV 781 (913)
Q Consensus 716 ~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~------------~~~~~~v~~s~~~~~ll~~~~dg~ 781 (913)
.|.+.|.|+++......++++|+-|+.|++||++++. .+..+ +..+.+++..+.+..++.|+.++.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 9999999999955557799999999999999999873 23222 224556777788778888888999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEE
Q 002519 782 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 860 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~ 860 (913)
|++||.++.+.+..+.+|+..|..+..++||..+++++.| +|++||+... +|+.++..|...|+++..+|+-.+++
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCCCcceEE
Confidence 9999999999999999999999999999999999999999 9999999654 89999999999999999999999999
Q ss_pred EEEcCCeEEEEECCC-CcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 861 VIGCYQSLELWNMSE-NKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 861 s~s~dg~I~iwd~~~-~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+|+.|+.|..-|+++ .++..+...+.+|..+..+....-+-+++.|+.|+-|.
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 999999999999998 44556667777888888876555556777899998884
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=254.98 Aligned_cols=279 Identities=18% Similarity=0.266 Sum_probs=210.5
Q ss_pred CCCCCcceEEEEcCCCccccCC---CCeEEeCCCcchhhhccccc---------ccC------CccCceeeecccCCCCC
Q 002519 546 SGTTSKPLMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLV---------EDG------SLDDNVESFLSHDDTDP 607 (913)
Q Consensus 546 ~~~~~~~~~~~s~dg~~~~~~~---~~~vWd~~~g~~~~~~~~~~---------~~g------~~d~~v~~~~~~d~~~~ 607 (913)
........+.||+||+|+++++ .++||.+...+. ..++... +.+ ............-....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 3445688999999999999955 559999987544 1111100 000 00001111111111111
Q ss_pred CCCCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECC-C
Q 002519 608 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-S 686 (913)
Q Consensus 608 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fsp-d 686 (913)
.......-.....|.-+++..++||.+.|.+|.||.++ +|++++.|++|+||++...+++..|. |.+.|+||+|+| |
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 11223334444567778999999999999999999876 99999999999999999999999885 999999999999 6
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--------
Q 002519 687 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-------- 758 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-------- 758 (913)
.+||++||.||.||||++.. ..+..+.....-|++++|.|+|...| .|+.+|.+++|+....+....+.
T Consensus 422 DryFiSGSLD~KvRiWsI~d--~~Vv~W~Dl~~lITAvcy~PdGk~av-IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISD--KKVVDWNDLRDLITAVCYSPDGKGAV-IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred CCcEeecccccceEEeecCc--CeeEeehhhhhhheeEEeccCCceEE-EEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 78999999999999999985 34555555668899999999987555 99999999999999877654432
Q ss_pred --C-CceEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 002519 759 --G-GTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTVGS 830 (913)
Q Consensus 759 --~-~~~~v~~s~~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~--~V~sl~~spdg~~l~s~s~d-~I~vwdl~~ 830 (913)
+ .++.+.|.|.. ..+++++.|..|+|||.++..++..|+++.. .-....|+.||++|+++++| .|+||++..
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 1 36667777655 4699999999999999999999999987543 34577899999999999999 999999843
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=230.56 Aligned_cols=259 Identities=20% Similarity=0.337 Sum_probs=218.0
Q ss_pred CCCCCCcccccccCccceeeeEeecCCCCEEEEEEecCC---CEEEEEeCCCcEEEEECCCCce----eeEeccCCCCeE
Q 002519 607 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG---KLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLIT 679 (913)
Q Consensus 607 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg---~~Lasgs~Dg~V~vwd~~~~~~----~~~l~~h~~~V~ 679 (913)
.-|+..|+|+.. -+....+.+|.++|.+++|-... ..|++++.|.++++|.++.++. +....||...|-
T Consensus 122 sYDg~~riWd~~----Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~ 197 (423)
T KOG0313|consen 122 SYDGTSRIWDLK----GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVD 197 (423)
T ss_pred ecCCeeEEEecC----CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccccee
Confidence 445566666653 46888999999999988885433 4699999999999999886543 334459999999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCC------------------------CceeEEeccCCCCeEEEEEcCCCCeEEE
Q 002519 680 DVRFSPSMPRLATSSFDKTVRVWDADNP------------------------GYSLRTFMGHSASVMSLDFHPNKDDLIC 735 (913)
Q Consensus 680 ~l~fspdg~~Lasgs~Dg~V~Iwdl~~~------------------------~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 735 (913)
+|+..+++.++++||.|.+|.||+..+. +.++.++.+|..+|.++.|++ ...++
T Consensus 198 sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~y 275 (423)
T KOG0313|consen 198 SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIY 275 (423)
T ss_pred EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceE
Confidence 9999999999999999999999994320 124567789999999999998 34677
Q ss_pred EEeCCCcEEEEEcCCCeeeEEeeC--CceEEEEecCCCEEEEEEcCCeEEEEECCCC---eEEEEecCCCCCeEEEEEcC
Q 002519 736 SCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDP 810 (913)
Q Consensus 736 sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~---~~~~~l~~h~~~V~sl~~sp 810 (913)
+++.|.+|+.||++++.++..+.+ ...++.+++....+++++.|..|++||.+++ -....|.+|.+.|.++.|+|
T Consensus 276 S~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp 355 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP 355 (423)
T ss_pred eecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCC
Confidence 999999999999999998887765 4578889999899999999999999999986 45678899999999999999
Q ss_pred CCC-EEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002519 811 SGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 811 dg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
... .|++++.| ++++||+|+.. ..+..+..|...|.++.|. ++..|++|+.|++|+|+.-.
T Consensus 356 ~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 356 TNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 766 78899999 99999999762 4788899999999999997 45579999999999998653
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=222.11 Aligned_cols=239 Identities=23% Similarity=0.399 Sum_probs=208.7
Q ss_pred eEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 002519 669 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 747 (913)
Q Consensus 669 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~-~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwd 747 (913)
+.+.+|...|.+|+|+.+|.+|++|+.|++++||+++.... .-....+|.+.|-.++|+|....+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 55678999999999999999999999999999999986321 12345689999999999999899999999999999999
Q ss_pred cCCCeeeEEee--CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCE-EEEEeCCeEE
Q 002519 748 INNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL-LASVSEDSVR 824 (913)
Q Consensus 748 l~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~-l~s~s~d~I~ 824 (913)
++.++++.... ++...+.|+|++++++++..|..|.++|.++.+.+...+ ....+..++|+.++.+ +++.+.++|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 99999988765 456678999999999999999999999999988777655 4456788899987774 4455556898
Q ss_pred EEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 002519 825 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 903 (913)
Q Consensus 825 vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasg 903 (913)
|.... ..+.+..+..|.....|+.|+|+|++|++|+.|-.+.+||+.+.-++ .+..++-+|+.|.|+.||++||+|
T Consensus 173 ILsyp---sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 173 ILSYP---SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEecc---ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 88885 44888999999999999999999999999999999999999998877 778899999999999999999999
Q ss_pred eCCCcEEE
Q 002519 904 SHDKFVKL 911 (913)
Q Consensus 904 s~DG~I~I 911 (913)
++|..|-|
T Consensus 250 SEDh~IDI 257 (313)
T KOG1407|consen 250 SEDHFIDI 257 (313)
T ss_pred CccceEEe
Confidence 99988865
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=254.49 Aligned_cols=248 Identities=25% Similarity=0.440 Sum_probs=216.3
Q ss_pred cCccceeeeE-eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002519 619 QGFSFKEANS-VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 697 (913)
Q Consensus 619 ~~~~~~~~~~-l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 697 (913)
+....+.+.. +.+|.+.|++++|..-+.+|++|+.|.+++|||+.++.+..++.+|...|.++...+ .++++|+.|.
T Consensus 234 ~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~ 311 (537)
T KOG0274|consen 234 DLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDN 311 (537)
T ss_pred ecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCc
Confidence 3334455666 999999999999988788999999999999999999999999999999999998754 4888899999
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEE-EecCC-CEEEE
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHL-GRYLA 775 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~-~s~~~-~~ll~ 775 (913)
+|+||++.+ +.++..+.+|.+.|.++.++ ..++++|+.|++|++||+.++++++.+.++...+. +..+. ..++.
T Consensus 312 tVkVW~v~n-~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~S 387 (537)
T KOG0274|consen 312 TVKVWDVTN-GACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLS 387 (537)
T ss_pred eEEEEeccC-cceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEe
Confidence 999999997 88899999999999999998 33777999999999999999999999998765433 24444 88999
Q ss_pred EEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeec-CCCceEEEEE
Q 002519 776 AAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVF 852 (913)
Q Consensus 776 ~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~-~~~~i~~l~~ 852 (913)
++.|+.|++||+++. +++.++.+|..-|.++.+ .+++|++++.| +|++||..++ .+++.+.+ +...|..+++
T Consensus 388 gs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~ 462 (537)
T KOG0274|consen 388 GSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG---ECLRTLEGRHVGGVSALAL 462 (537)
T ss_pred eeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccC---ceeeeeccCCcccEEEeec
Confidence 999999999999999 999999999999876655 57899999999 9999999876 77777777 5677877777
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002519 853 HPTYPSLLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 853 sp~g~~l~s~s~dg~I~iwd~~~~~~~ 879 (913)
. ...+++++.++.+++||+++++..
T Consensus 463 ~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 463 G--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred C--cceEEEEecCCeeEEEecccCchh
Confidence 6 567999999999999999999877
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=243.81 Aligned_cols=347 Identities=14% Similarity=0.204 Sum_probs=263.9
Q ss_pred CCCCeEEeCCCcchhhhcccccccCCcc-------------------CceeeecccCC----CCCCCCCCcccccccCcc
Q 002519 566 SPSNQLWDDKDLELRADMDRLVEDGSLD-------------------DNVESFLSHDD----TDPRDAGGRGMDVSQGFS 622 (913)
Q Consensus 566 ~~~~~vWd~~~g~~~~~~~~~~~~g~~d-------------------~~v~~~~~~d~----~~~~d~~~~~~~~~~~~~ 622 (913)
.+.++||+.++.+....+.+--+.|... +.|...+.+-. ....|-...+||+.+...
T Consensus 279 ~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~k 358 (1080)
T KOG1408|consen 279 KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNK 358 (1080)
T ss_pred cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccc
Confidence 5677999999988777766533333221 11221111110 012344556888888777
Q ss_pred ceeeeEeecCCCCEEEEEEecCC-----------CEEEEEeCCCcEEEEECCCCceeeE---------------------
Q 002519 623 FKEANSVRASTSKVICCHFSSDG-----------KLLATGGHDKKAVLWHTDTLKSKTN--------------------- 670 (913)
Q Consensus 623 ~~~~~~l~~H~~~V~~l~fspdg-----------~~Lasgs~Dg~V~vwd~~~~~~~~~--------------------- 670 (913)
......+--|...|+.|.--|.. ..++|++.|++|+|||++.+..-.+
T Consensus 359 vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q 438 (1080)
T KOG1408|consen 359 VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ 438 (1080)
T ss_pred ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh
Confidence 77778888899999998876521 2588999999999999874211100
Q ss_pred ----------------eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCC--CCe
Q 002519 671 ----------------LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--KDD 732 (913)
Q Consensus 671 ----------------l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~--~~~ 732 (913)
.......|.+|+.+|++.+||+|..-|++||||+.+ ......+..|...|.|+.|+.- +..
T Consensus 439 ~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eAHesEilcLeyS~p~~~~k 517 (1080)
T KOG1408|consen 439 IMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEAHESEILCLEYSFPVLTNK 517 (1080)
T ss_pred hhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh-hhhhhheecccceeEEEeecCchhhhH
Confidence 001344699999999999999999999999999987 5566777899999999999752 456
Q ss_pred EEEEEeCCCcEEEEEcCCC-eeeEEeeC---CceEEEEecCC--CEEEEEEcCCeEEEEECCCCeEEEEecCC-----CC
Q 002519 733 LICSCDGDGEIRYWSINNG-SCTRVFKG---GTAQMRFQPHL--GRYLAAAAENVVSILDAETQACRLSLQGH-----TK 801 (913)
Q Consensus 733 ll~sgs~Dg~I~iwdl~~~-~~~~~~~~---~~~~v~~s~~~--~~ll~~~~dg~I~i~D~~t~~~~~~l~~h-----~~ 801 (913)
||++++.|..|.|||+... ..+.++.+ .++.+.|...+ ..+++++.|..|.+--.........+..| ..
T Consensus 518 LLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~kt 597 (1080)
T KOG1408|consen 518 LLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKT 597 (1080)
T ss_pred hhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccc
Confidence 8999999999999999754 34445544 46778888877 67888888887765433322111222222 34
Q ss_pred CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-
Q 002519 802 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM- 879 (913)
Q Consensus 802 ~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~- 879 (913)
.++.++..|..+++++++.| .|+|||+.+++..+.++.-..|++....+...|.|.||++.+.|.++.|||+.+++++
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA 677 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh
Confidence 68899999999999999999 9999999998655555555567788889999999999999999999999999999999
Q ss_pred EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 880 TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 880 ~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
...+|...|+.+.|.+|.++|++.+.||+|.||+
T Consensus 678 ~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 678 QMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred hhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 8899999999999999999999999999999996
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=256.45 Aligned_cols=250 Identities=23% Similarity=0.394 Sum_probs=214.7
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC------------------CceeeEeccCCCCeEEEEECC
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSP 685 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~------------------~~~~~~l~~h~~~V~~l~fsp 685 (913)
+.+.....|.+.|+|+.|++||.+||+|++|+.|.||+... .+.+..+.+|...|.+++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 46677889999999999999999999999999999998762 346788999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC------
Q 002519 686 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------ 759 (913)
Q Consensus 686 dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~------ 759 (913)
++.+||+++.|++|.||+..+. ..++++.+|...|..+.|.|-|+ +|++-++|++|+||++.+..+.+.+..
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred CccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 9999999999999999999994 88999999999999999999987 567999999999999887666665543
Q ss_pred ---CceEEEEecCCCEEEEEEc----CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC-------------CC----EE
Q 002519 760 ---GTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-------------GE----LL 815 (913)
Q Consensus 760 ---~~~~v~~s~~~~~ll~~~~----dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd-------------g~----~l 815 (913)
....+.|+|+|.+|++... ..++.|.+..+.+.-..|-+|..++.+++|+|. .+ .+
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 2345789999999988655 348999999999999999999999999999981 11 67
Q ss_pred EEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002519 816 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 877 (913)
Q Consensus 816 ~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~ 877 (913)
|+|+.| +|.||........-.++.+ ....|..++|+|||-.|++++.||+|.++.+.+.+
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi~~l--f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVIHNL--FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEecCCccEEEEecCCCCchhhhhhh--hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 888999 9999998665443334433 36679999999999999999999999999997654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=218.48 Aligned_cols=283 Identities=20% Similarity=0.293 Sum_probs=213.1
Q ss_pred eeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee--eEec--cCCCCeEEEEECCCCCEEEEEe-CCCeEE
Q 002519 626 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLE--EHSSLITDVRFSPSMPRLATSS-FDKTVR 700 (913)
Q Consensus 626 ~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~--~~l~--~h~~~V~~l~fspdg~~Lasgs-~Dg~V~ 700 (913)
+..+++|.+.|+|++|+.||++||+++.|++|+||+++..... +.++ ..-+.-+.++|.||.+-++... ...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4568999999999999999999999999999999999864321 1111 1223568899999988665554 456799
Q ss_pred EEEcCCC--C-cee--------EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEE
Q 002519 701 VWDADNP--G-YSL--------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRF 766 (913)
Q Consensus 701 Iwdl~~~--~-~~~--------~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~ 766 (913)
+|.+... + ... ..-+.|...|..+-.... ..+|++++.|..|.+|+++ |..+..+... ....++
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 9987531 1 111 122245566666666544 4577799999999999999 7777666543 345789
Q ss_pred ecCCCEEEEEEcCCeEEEEECC---CC-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC----CC
Q 002519 767 QPHLGRYLAAAAENVVSILDAE---TQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG----SE 833 (913)
Q Consensus 767 s~~~~~ll~~~~dg~I~i~D~~---t~-----~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~----~~ 833 (913)
+|+|..+++++..-.|++|.+- .| ..++.+++|...|..++|+++.+.+++.+.| +++|||+.-. ..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999753 22 3567889999999999999999999999999 9999998532 22
Q ss_pred CceEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 002519 834 GECVHEL----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 907 (913)
Q Consensus 834 ~~~i~~~----~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~DG 907 (913)
.+.+++. ...+..-..+..+|+|..|++ +....|++|..++++.. ....|+..|.+|+|+++|+++++|+ |.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 3333332 222344458899999986655 44568999999988877 3457999999999999999999998 55
Q ss_pred cEEEe
Q 002519 908 FVKLW 912 (913)
Q Consensus 908 ~I~IW 912 (913)
.++|+
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 67764
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-25 Score=233.48 Aligned_cols=254 Identities=22% Similarity=0.392 Sum_probs=217.0
Q ss_pred CCCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC
Q 002519 609 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 688 (913)
Q Consensus 609 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~ 688 (913)
|..++.|++..+ ....+.++.+..+.|+++.|.++++.+++++.|+.+++|+++..+...+|.+|.+.|+++.|.-...
T Consensus 196 Dr~Ik~W~v~~~-k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~ 274 (459)
T KOG0288|consen 196 DRIIKLWNVLGE-KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHS 274 (459)
T ss_pred hhhhhhhhcccc-hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhcccc
Confidence 344455555444 3568888999999999999999999999999999999999999999999999999999999998877
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--CCceEEEE
Q 002519 689 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRF 766 (913)
Q Consensus 689 ~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~ 766 (913)
.+++|+.|.+|++||+.. ..+.+++. ....+.+|+.. ...+++|-.|++|++||+++..+....+ +.++++..
T Consensus 275 ~vVsgs~DRtiK~WDl~k-~~C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~l 349 (459)
T KOG0288|consen 275 RVVSGSADRTIKLWDLQK-AYCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDL 349 (459)
T ss_pred ceeeccccchhhhhhhhh-hheecccc-ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEee
Confidence 899999999999999997 66766655 34556667765 3356799999999999999999888776 45788999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCC----CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEee
Q 002519 767 QPHLGRYLAAAAENVVSILDAETQACRLSLQGH----TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 841 (913)
Q Consensus 767 s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h----~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~ 841 (913)
+.++..+++++.|.++.++|+++...+..+... ...++.++|+|++.|+++|+.| .|+||++.++ ++...+.
T Consensus 350 s~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE~~l~ 426 (459)
T KOG0288|consen 350 SMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLEKVLS 426 (459)
T ss_pred ccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc---eEEEEec
Confidence 999999999999999999999999888877642 2348889999999999999999 9999999887 5555555
Q ss_pred cCCC--ceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002519 842 CNGN--KFHSCVFHPTYPSLLVIGCYQSLELW 871 (913)
Q Consensus 842 ~~~~--~i~~l~~sp~g~~l~s~s~dg~I~iw 871 (913)
.... .|++++|+|.|..+++++.++.+.+|
T Consensus 427 ~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 427 LSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 4443 59999999999999999999999999
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-24 Score=243.88 Aligned_cols=223 Identities=17% Similarity=0.266 Sum_probs=181.0
Q ss_pred EeecCCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCC-------ceeeEeccCCCCeEEEEECCCC-CEEEEEeCCCe
Q 002519 628 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKT 698 (913)
Q Consensus 628 ~l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~-------~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~ 698 (913)
.+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.++ +.+..+.+|...|.+|+|+|++ .+|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999999764 3567889999999999999985 69999999999
Q ss_pred EEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc----eEEEEecCCCEEE
Q 002519 699 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----AQMRFQPHLGRYL 774 (913)
Q Consensus 699 V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----~~v~~s~~~~~ll 774 (913)
|+|||+++ +..+..+.+|...|.+++|+|++. +|++++.|+.|+|||+++++.+..+.++. ..+.|.++++.++
T Consensus 150 VrIWDl~t-g~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 150 VNVWDVER-GKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred EEEEECCC-CeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence 99999997 667888889999999999999976 56699999999999999999887776543 3567888888888
Q ss_pred EEEc----CCeEEEEECCCCe-EEEEecCC-CCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCCCCCceEEEeec-CCC
Q 002519 775 AAAA----ENVVSILDAETQA-CRLSLQGH-TKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHELSC-NGN 845 (913)
Q Consensus 775 ~~~~----dg~I~i~D~~t~~-~~~~l~~h-~~~V~sl~~spdg~~l~s~s~-d-~I~vwdl~~~~~~~~i~~~~~-~~~ 845 (913)
+++. |+.|++||+++.. ++..+..+ ...+....|++++++|++++. | .|++||+.++. .+..... +..
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~~ 304 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSVE 304 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCCC
Confidence 7653 7899999998764 44333333 345666789999998888774 6 99999998763 3332222 344
Q ss_pred ceEEEEEeCC
Q 002519 846 KFHSCVFHPT 855 (913)
Q Consensus 846 ~i~~l~~sp~ 855 (913)
.+..++|.|.
T Consensus 305 ~~~g~~~~pk 314 (493)
T PTZ00421 305 PHKGLCMMPK 314 (493)
T ss_pred CCcceEeccc
Confidence 5777788775
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=217.70 Aligned_cols=269 Identities=18% Similarity=0.254 Sum_probs=216.4
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
-.+.|..|.|++.+..|++++.||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++ ..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~--~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG--NE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCC--cc
Confidence 3578999999999999999999999999999987555444 4889999999986 568999999999999999973 34
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 002519 712 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 791 (913)
Q Consensus 712 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~ 791 (913)
..+..|...|.||.+++..+ .+++|+.|++|++||.+...+...+.......+.+..++.|++++.+..|.+||+++..
T Consensus 88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence 55667999999999998655 45599999999999999877777776666667778888999999999999999999876
Q ss_pred EEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-CCCceEEEeecCC---------CceEEEEEeCCCCE
Q 002519 792 CRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHELSCNG---------NKFHSCVFHPTYPS 858 (913)
Q Consensus 792 ~~~~l~~--h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~-~~~~~i~~~~~~~---------~~i~~l~~sp~g~~ 858 (913)
....... ..-.++||++-|++.-+++++-| .|.+=.+... ........+++|. .+|++++|||-...
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t 246 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT 246 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence 5543322 34568999999988856666655 5555444332 1123334455543 36899999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeC
Q 002519 859 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASH 905 (913)
Q Consensus 859 l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~ 905 (913)
|++|+.||.|.+||+.+.+.+ .+...+..|..++|+.+|..||+|+.
T Consensus 247 faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999998877 66667788999999999999999873
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=237.27 Aligned_cols=294 Identities=15% Similarity=0.249 Sum_probs=232.9
Q ss_pred ccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCE-EEEEeCC
Q 002519 618 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFD 696 (913)
Q Consensus 618 ~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~D 696 (913)
++--+-+.+.++.++.+.|++|.=+|-=..+|.|..+|+|.|++++.++.+.+|+...+.|++++|.-||+. +++|+..
T Consensus 187 ~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~ 266 (910)
T KOG1539|consen 187 WNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSN 266 (910)
T ss_pred EEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCC
Confidence 333345889999999999999999998889999999999999999999999999977799999999999985 5677778
Q ss_pred CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe------------------------
Q 002519 697 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------------------------ 752 (913)
Q Consensus 697 g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~------------------------ 752 (913)
|.+.+||++...........|.+.|..+.|.+.. .++++++.|+.+++|=.+++.
T Consensus 267 G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~ 345 (910)
T KOG1539|consen 267 GDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGS 345 (910)
T ss_pred ceEEEEEcCCCeeeeeeeccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeecc
Confidence 9999999987333323333555555555555542 244455555544444221000
Q ss_pred --------------------------------------------------------------------------------
Q 002519 753 -------------------------------------------------------------------------------- 752 (913)
Q Consensus 753 -------------------------------------------------------------------------------- 752 (913)
T Consensus 346 ~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~ 425 (910)
T KOG1539|consen 346 QGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAY 425 (910)
T ss_pred CcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEE
Confidence
Q ss_pred --------e-eEEe--------eCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe---cCCCCCeEEEEEcCCC
Q 002519 753 --------C-TRVF--------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWDPSG 812 (913)
Q Consensus 753 --------~-~~~~--------~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l---~~h~~~V~sl~~spdg 812 (913)
. ...+ ...+.+++.++.|+..+.|.+.|.|.+|++.+|....++ ..|..+|++++.+.-+
T Consensus 426 tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n 505 (910)
T KOG1539|consen 426 TWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN 505 (910)
T ss_pred EEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC
Confidence 0 0000 012345778888888999999999999999999888888 4799999999999989
Q ss_pred CEEEEEeCC-eEEEEECCCCC--------------------------------------CCceEEEeecCCCceEEEEEe
Q 002519 813 ELLASVSED-SVRVWTVGSGS--------------------------------------EGECVHELSCNGNKFHSCVFH 853 (913)
Q Consensus 813 ~~l~s~s~d-~I~vwdl~~~~--------------------------------------~~~~i~~~~~~~~~i~~l~~s 853 (913)
+.+++++.+ -+++||+.+.. ..+.++++.+|.+.|++++||
T Consensus 506 ~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS 585 (910)
T KOG1539|consen 506 RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS 585 (910)
T ss_pred ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC
Confidence 989988888 99999987542 012234556789999999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC-CcEEEe
Q 002519 854 PTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 912 (913)
Q Consensus 854 p~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~D-G~I~IW 912 (913)
|||++|++++.|++|++||+.++.++-...-+.++..+.|+|+|.+|||+..| .-|++|
T Consensus 586 ~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 586 PDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred CCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 99999999999999999999999999888889999999999999999999988 669999
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=241.31 Aligned_cols=237 Identities=19% Similarity=0.310 Sum_probs=206.8
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.|+.|.++|++......
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 67899999999999999999999999999999999999999 99999999998 6789999999999999999866555
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---eCCceEEEEecCCCEEEEEEc---CCeEEEE
Q 002519 712 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAA---ENVVSIL 785 (913)
Q Consensus 712 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~s~~~~~ll~~~~---dg~I~i~ 785 (913)
.++.+|...|+.+.|++|+. .+++|+.|+.|.|||.........+ ...+..++|+|....+++.+. |+.|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 66889999999999999976 5679999999999999666655554 456678899998866666443 8999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE-eCC--eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEE
Q 002519 786 DAETQACRLSLQGHTKPIDSVCWDPSGELLASV-SED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 862 (913)
Q Consensus 786 D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~-s~d--~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~ 862 (913)
|..+++.+..+. ....|.+|.|++..+-|+++ +.. .|.||++.+. ..+..+.+|...|..++++|||..|+++
T Consensus 374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred EcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 999999888776 45789999999988755544 333 8999999764 7888999999999999999999999999
Q ss_pred EcCCeEEEEECCCC
Q 002519 863 GCYQSLELWNMSEN 876 (913)
Q Consensus 863 s~dg~I~iwd~~~~ 876 (913)
+.|.++++|++-..
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999998764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-25 Score=222.80 Aligned_cols=290 Identities=15% Similarity=0.238 Sum_probs=227.4
Q ss_pred eEEEEcCCCccccC---CCCeEEeCCCcchhhhcccccccCCccCceeeecccCCCCCCCCCCcccccccCccceeeeEe
Q 002519 553 LMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV 629 (913)
Q Consensus 553 ~~~~s~dg~~~~~~---~~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~l 629 (913)
...|++||...+++ .+++|.|++.+--+.....+. ..+ . ...-..++++
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~-------------~~~-~--------------qa~hPvIRTl 168 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMI-------------SGD-T--------------QARHPVIRTL 168 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhc-------------cCC-c--------------ccCCceEeeh
Confidence 56799999987774 466887776432211111110 000 0 0123567889
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 630 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 630 ~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
-.|.+.|+++.|+|....|++|+.|++|++||+......+.++ .....|.+|.|+|.|.+|+.|..--++++||+++
T Consensus 169 YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T- 247 (430)
T KOG0640|consen 169 YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT- 247 (430)
T ss_pred hhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc-
Confidence 9999999999999999999999999999999998654444333 3567899999999999999999999999999998
Q ss_pred CceeEEe---ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC-----CceEEEEecCCCEEEEEEcC
Q 002519 708 GYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 708 ~~~~~~~---~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~s~~~~~ll~~~~d 779 (913)
..+.... ..|.+.|+++.+++.++ +.++++.||.|+|||--+++|+.++.. .+.+..|..+++++++.+.|
T Consensus 248 ~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 248 YQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD 326 (430)
T ss_pred eeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc
Confidence 4333322 36899999999999977 556999999999999999999988853 34567799999999999999
Q ss_pred CeEEEEECCCCeEEEEecCCC--C---CeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCCceEEEeecCCCceEEEEE
Q 002519 780 NVVSILDAETQACRLSLQGHT--K---PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 852 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~--~---~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~ 852 (913)
..|++|.+.+++++.++.+.. + --+...|+....|++.-.+. .++-||.++...... .-.+|.+.+..+.-
T Consensus 327 S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l--~slgHn~a~R~i~H 404 (430)
T KOG0640|consen 327 STVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL--LSLGHNGAVRWIVH 404 (430)
T ss_pred ceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh--cccCCCCCceEEEe
Confidence 999999999999999887642 1 13345688888888888776 899999998754332 23467899999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECC
Q 002519 853 HPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 853 sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
+|.+..|++|+.|..+++|--+
T Consensus 405 SP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 405 SPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCCCCceeeecccceeeeeeec
Confidence 9999999999999999999643
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=237.78 Aligned_cols=274 Identities=18% Similarity=0.309 Sum_probs=228.7
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce--eeEeccCCCCeEE-EEECC-CCCEEEEEeCCC
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITD-VRFSP-SMPRLATSSFDK 697 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~--~~~l~~h~~~V~~-l~fsp-dg~~Lasgs~Dg 697 (913)
.++.-+.+++|...|..|++.+.. .+++++.||+++||+-..... ...+.+|.+.|.+ ++|-+ ++-+|++|+.|+
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 356778899999999999876554 899999999999999754433 3557788888888 88875 445799999999
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEEEEecCCCEEE
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYL 774 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll 774 (913)
+|.+|.+.. ..++.++++|...|+|+....++. +++|+.|.++++|.+. ++...+.+| +..+...|++ .++
T Consensus 82 ~i~v~~~~~-~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~v 155 (745)
T KOG0301|consen 82 TIIVFKLSQ-AEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYV 155 (745)
T ss_pred eEEEEecCC-CCchhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEE
Confidence 999999987 788999999999999999876654 5699999999999875 444445554 4556777776 999
Q ss_pred EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEe
Q 002519 775 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 853 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~s 853 (913)
+|+.|.+|++|.. ++++.+|.+|.+.|+.+++-+++. |++|+.| .|++|++ ++ .++.+..+|.+.+.++...
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~ 228 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMA 228 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cC---ceeeeeeccceEEEEEEec
Confidence 9999999999987 778899999999999999998765 5566666 9999999 33 7899999999999999988
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC-CeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 854 PTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 854 p~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~-~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
.++..|++++.|++++||+.. ++.....|.. .|+++++-++|. |++|+.||.||||
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 888899999999999999987 5554445555 899999988886 6678889999998
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=227.76 Aligned_cols=271 Identities=20% Similarity=0.281 Sum_probs=220.6
Q ss_pred eeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee----E-------------e-ccCCCCeEEEEECCCC
Q 002519 626 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT----N-------------L-EEHSSLITDVRFSPSM 687 (913)
Q Consensus 626 ~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~----~-------------l-~~h~~~V~~l~fspdg 687 (913)
+..+..|.-.|+||++++|.+++++++.|++|.-|++.+++..+ . - +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 67788999999999999999999999999999999998776331 1 1 2688899999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC---ceEE
Q 002519 688 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQM 764 (913)
Q Consensus 688 ~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v 764 (913)
+|||+|+.|..|.||+.++ ...+..+.+|.+.|.+++|-.....+ ++++.|+.|++|++.....+.++-++ +..+
T Consensus 215 kylatgg~d~~v~Iw~~~t-~ehv~~~~ghr~~V~~L~fr~gt~~l-ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDT-LEHVKVFKGHRGAVSSLAFRKGTSEL-YSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcc-cchhhcccccccceeeeeeecCccce-eeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 9999999999999999998 77888999999999999998765555 49999999999999988777776554 3445
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEee--
Q 002519 765 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-- 841 (913)
Q Consensus 765 ~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~-- 841 (913)
........+-+++.|+++++|++. .+....+.+|.+.+.|++|..+ ..|++|+++ .|.+|++-+.. .+....
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk---plf~~~~A 367 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKK---PLFTSRLA 367 (479)
T ss_pred chhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccC---ceeEeecc
Confidence 555555666666789999999994 4455567888999999999854 567788888 99999997652 222211
Q ss_pred ----------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc----EEEEcccCCCeEEEEEeCCCCEEEEE
Q 002519 842 ----------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK----TMTLTAHEGLIAALAVSTETGYVASA 903 (913)
Q Consensus 842 ----------~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~----~~~~~~h~~~V~~l~~spdg~~Lasg 903 (913)
.+..+|++++..|..+++++|+.+|.|++|-+.++- ++.-..-.+.|++|+|+++|++|++|
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 112379999999999999999999999999998882 33334477899999999999966554
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-24 Score=216.44 Aligned_cols=257 Identities=21% Similarity=0.382 Sum_probs=209.7
Q ss_pred EEEEEeCCCcEEEEECCC------------CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 002519 647 LLATGGHDKKAVLWHTDT------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 714 (913)
Q Consensus 647 ~Lasgs~Dg~V~vwd~~~------------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~ 714 (913)
.|++|++...|.-+++.. ...+..+..|.+.|++|+.+ +.++|+||.|.+|+|||+.. ...+..+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k-~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK-RKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccc-hhhhcce
Confidence 467777777777666542 22356677899999999985 78999999999999999997 6677788
Q ss_pred ccCCCCeEEEEEcCCCC--eEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEEEcCCeEEEEECCC
Q 002519 715 MGHSASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAET 789 (913)
Q Consensus 715 ~~h~~~V~sl~fsp~~~--~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t 789 (913)
..|.+.|+++.|.+.-. +|| +|++||.|.+|+.....++..++. .++.++++|.+...++.+.|+.+++|++-+
T Consensus 80 l~HagsitaL~F~~~~S~shLl-S~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLL-SGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred eccccceEEEEecCCcchhhee-eecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence 88999999999998753 566 999999999999999988888765 467899999999999999999999999999
Q ss_pred CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 002519 790 QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLE 869 (913)
Q Consensus 790 ~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~ 869 (913)
++.-+.+.- ...-+.|.|+|.|.+|+.+..+.|-||.+.+.. .+.++.. ...+.++.|- ++..+++|+.++.|.
T Consensus 159 Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~---v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~ 232 (362)
T KOG0294|consen 159 GRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNAS---VFREIEN-PKRILCATFL-DGSELLVGGDNEWIS 232 (362)
T ss_pred Cccceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHh---Hhhhhhc-cccceeeeec-CCceEEEecCCceEE
Confidence 876665542 223345999999999999999999999987652 2222221 2345555554 567899999999999
Q ss_pred EEECCCCcEE-EEcccCCCeEEEEE--eCCCCEEEEEeCCCcEEEeC
Q 002519 870 LWNMSENKTM-TLTAHEGLIAALAV--STETGYVASASHDKFVKLWK 913 (913)
Q Consensus 870 iwd~~~~~~~-~~~~h~~~V~~l~~--spdg~~Lasgs~DG~I~IWd 913 (913)
+||.+...+. .+.+|+..|.++.+ .|++.+|+|+|.||.|+|||
T Consensus 233 ~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 233 LKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred EeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 9999987766 78899999999985 46788999999999999997
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=216.43 Aligned_cols=275 Identities=20% Similarity=0.303 Sum_probs=222.2
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEec
Q 002519 636 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 715 (913)
Q Consensus 636 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~ 715 (913)
..||.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|++||+.|+|+|.|..|.+||+.. +.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC-CCceeEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999998 55666665
Q ss_pred cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee--eEEe-----eCCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002519 716 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC--TRVF-----KGGTAQMRFQPHLGRYLAAAAENVVSILDAE 788 (913)
Q Consensus 716 ~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~--~~~~-----~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~ 788 (913)
...+|+.+.|+|...+.++++-.+..-.+.++...+. +..- .....+..|.+.++++++|...|.+.+||..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 6789999999998877776666666566666654321 1111 1112334588899999999999999999999
Q ss_pred CCeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC------CCCceEEEee--cCCCceEEEEEeCCCCE
Q 002519 789 TQACRLSLQGHT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSG------SEGECVHELS--CNGNKFHSCVFHPTYPS 858 (913)
Q Consensus 789 t~~~~~~l~~h~-~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~------~~~~~i~~~~--~~~~~i~~l~~sp~g~~ 858 (913)
+.+++..++-.. ..|..|.|+..|++|++-+.| .||.|+++.- .+.+..+.+. .......+|+|+.+|.|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999999988766 789999999999999999999 9999998632 1111111111 12334678999999999
Q ss_pred EEEEEcC-CeEEEEECCCCcEE-EEcccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 859 LLVIGCY-QSLELWNMSENKTM-TLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 859 l~s~s~d-g~I~iwd~~~~~~~-~~~~h~-~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+++++.. ..++||....|.++ .+.+.. ....++.|+|-...|++- ..|.|+||.
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 9988854 48999999999988 455555 578889999998888877 788999993
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=195.75 Aligned_cols=247 Identities=19% Similarity=0.341 Sum_probs=208.0
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----eeeEeccCCCCeEEEEECCC----CCEEEEEe
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHSSLITDVRFSPS----MPRLATSS 694 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-----~~~~l~~h~~~V~~l~fspd----g~~Lasgs 694 (913)
-..+.-+.|.+.|+|.+|||+|.+||+|+.|++|++..+.... ....|.-|.+.|.+++|-.+ +.+|++++
T Consensus 80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g 159 (350)
T KOG0641|consen 80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG 159 (350)
T ss_pred EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence 3445567899999999999999999999999999998765322 23457779999999999643 45777776
Q ss_pred C-CCeEEEEEcCCCCceeEEeccCCCCeEEEE-EcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC----------Cce
Q 002519 695 F-DKTVRVWDADNPGYSLRTFMGHSASVMSLD-FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----------GTA 762 (913)
Q Consensus 695 ~-Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~-fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----------~~~ 762 (913)
. |..|++-|... +..+..+.+|.+.|.++- |+ +.+|++|+.|.+|++||++-..++.++.. .+.
T Consensus 160 agdc~iy~tdc~~-g~~~~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessava 235 (350)
T KOG0641|consen 160 AGDCKIYITDCGR-GQGFHALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVA 235 (350)
T ss_pred CCcceEEEeecCC-CCcceeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeE
Confidence 5 77888888877 778899999999998763 43 45888999999999999999998887632 356
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-CCCceEEEe
Q 002519 763 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHEL 840 (913)
Q Consensus 763 ~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~-~~~~~i~~~ 840 (913)
.+++.|.+..++++-.|....+||++.++.+..+..|...|.|+.|+|...|+++|+.| .|++-|+... .....+..+
T Consensus 236 av~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 236 AVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred EEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE
Confidence 78899999999999999999999999999999999999999999999999999999999 9999998643 122345556
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002519 841 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 841 ~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
..|..++..|.|+|..-.+++.+.|.++.+|-+.
T Consensus 316 ~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 AEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 6788999999999999999999999999999764
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-24 Score=229.59 Aligned_cols=275 Identities=19% Similarity=0.300 Sum_probs=231.9
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC---CceeeEec--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~---~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 705 (913)
.|..-|.++.+|...++++||+ .|.|+|||+.. ...+..+. .-...|.++.+.|||+.|++|++-.+|.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 5888899999999999999997 57899999973 23333333 245679999999999999999999999999998
Q ss_pred CCCceeE-EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEEEcCCe
Q 002519 706 NPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENV 781 (913)
Q Consensus 706 ~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~~~dg~ 781 (913)
.+...++ .+....-.+++++.+||.+ +.++|..||.|.|||+.+...++.|.+ +..+|.++.+|..|.+++-|++
T Consensus 496 apTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 7554333 2333334677899999977 445888899999999999999999987 4678999999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEE
Q 002519 782 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 860 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~ 860 (913)
|+.||+++++.+.... ....|.++.++|.+.+|++|-++ .+.|...... ..+.+.-|+..|.++.|.+.|++++
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp----~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP----EKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc----cceeecccccEEEEEEecccCceee
Confidence 9999999987655433 45779999999999999999988 8888777543 3345666788999999999999999
Q ss_pred EEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 861 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 861 s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
+.+.|+.+..|...-|..+.-....+.|.++.++.|.++|+||+.|+...||
T Consensus 650 StGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 9999999999999999988888888999999999999999999999887776
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=221.00 Aligned_cols=262 Identities=13% Similarity=0.114 Sum_probs=204.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEEcCCCCceeEEeccCCCCeEE
Q 002519 645 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 723 (913)
Q Consensus 645 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~s 723 (913)
++++++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||+.+ +..+..+..+.. +..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPSGPD-PEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccCCCC-ccE
Confidence 35788999999999999999998888876644 7789999999977 5667789999999987 555555554433 567
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC--CceEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEecCCC
Q 002519 724 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHT 800 (913)
Q Consensus 724 l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~dg-~I~i~D~~t~~~~~~l~~h~ 800 (913)
++|+|+++.++++++.|+.|++||+++.+.+..+.. ....+.|++++..++++..++ .+.+||.++++.+..+.. .
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence 899999987877777899999999999888777753 356789999999988888765 577889998877665442 3
Q ss_pred CCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCCceEEEeecC-------CCceEEEEEeCCCCEEEEE-EcCCeEEE
Q 002519 801 KPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVFHPTYPSLLVI-GCYQSLEL 870 (913)
Q Consensus 801 ~~V~sl~~spdg~~l~s~s-~d-~I~vwdl~~~~~~~~i~~~~~~-------~~~i~~l~~sp~g~~l~s~-s~dg~I~i 870 (913)
..+.+++|++++.+|++++ .+ .|++||+.++. ++..+..+ ......++|+|++++++++ +.++.|.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK---VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce---eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 3457899999999876554 45 99999998763 33333211 1123468899999986654 45678999
Q ss_pred EECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE-eCCCcEEEeC
Q 002519 871 WNMSENKTMTLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 913 (913)
Q Consensus 871 wd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg-s~DG~I~IWd 913 (913)
||+.+++......+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 999998887555566789999999999999886 4689999997
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=211.39 Aligned_cols=229 Identities=17% Similarity=0.304 Sum_probs=189.0
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEEc
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDA 704 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwdl 704 (913)
+....|.++|.|++|+.||..+++|+.|+.+++||+.++ .+..+..|.++|.++.|-+... .|+|||.|++|+.||.
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~ 144 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT 144 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence 345679999999999999999999999999999999998 5778889999999999987766 8999999999999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-----EEeeCCceEEEEecCCCEEEEEEcC
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-----RVFKGGTAQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~-----~~~~~~~~~v~~s~~~~~ll~~~~d 779 (913)
+. ..++.++. ..+.|++++.-. .+++.+..++.|.+|+++++... ..++-.+.++++..+...++.|+-+
T Consensus 145 R~-~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 145 RS-SNPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred CC-CCeeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 97 55555554 557788877653 36778888999999999876432 2234456788888888888999999
Q ss_pred CeEEEEECCCC--eEEEEecCCCC---------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCce
Q 002519 780 NVVSILDAETQ--ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 847 (913)
Q Consensus 780 g~I~i~D~~t~--~~~~~l~~h~~---------~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i 847 (913)
|.+.|..+..+ +.-++|+.|+. .|++|+|+|....|++++.| ++.+||-... ..++....+..+|
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPI 296 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCcc
Confidence 99999888776 66667777763 47889999988888888888 9999998654 5666777789999
Q ss_pred EEEEEeCCCCEEEEEEc
Q 002519 848 HSCVFHPTYPSLLVIGC 864 (913)
Q Consensus 848 ~~l~~sp~g~~l~s~s~ 864 (913)
++|+|+.+|.+++.+..
T Consensus 297 tcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYALG 313 (347)
T ss_pred ceeEecCCCCEEEEEee
Confidence 99999999998887754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-23 Score=236.95 Aligned_cols=228 Identities=16% Similarity=0.221 Sum_probs=176.8
Q ss_pred eeeeEeecCCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCc--------eeeEeccCCCCeEEEEECCCCCE-EEEE
Q 002519 624 KEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHSSLITDVRFSPSMPR-LATS 693 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~--------~~~~l~~h~~~V~~l~fspdg~~-Lasg 693 (913)
..+..+.+|.+.|.+|+|+|+ +.+||+|+.||+|+|||+.++. .+..+.+|...|.+|+|+|++.. |+++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 567789999999999999996 7899999999999999997532 34467899999999999999875 5789
Q ss_pred eCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCce---E-----EE
Q 002519 694 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---Q-----MR 765 (913)
Q Consensus 694 s~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---~-----v~ 765 (913)
+.|++|+|||+++ +..+..+. |...|.+++|+++|. +|++++.|+.|+|||+++++.+..+.++.. . ..
T Consensus 145 S~DgtIrIWDl~t-g~~~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 145 GFDSFVNIWDIEN-EKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred eCCCeEEEEECCC-CcEEEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence 9999999999998 44455554 667899999999987 556888899999999999998888776532 1 12
Q ss_pred EecCCCEEEEEEcCC----eEEEEECCC-CeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceE
Q 002519 766 FQPHLGRYLAAAAEN----VVSILDAET-QACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 837 (913)
Q Consensus 766 ~s~~~~~ll~~~~dg----~I~i~D~~t-~~~~~~l~~--h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i 837 (913)
|+++++++++++.++ .|+|||+++ .+++..+.. +...+......++|.++++|+.| .|++|++..+ ....+
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~-~~~~l 300 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG-SIRKV 300 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC-cEEee
Confidence 347888999988764 799999996 455554432 33334444445568889999888 9999999765 22333
Q ss_pred EEeecCCCceEEEEEeCCC
Q 002519 838 HELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 838 ~~~~~~~~~i~~l~~sp~g 856 (913)
..+. +..++..++|.|+.
T Consensus 301 ~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 301 NEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred cccc-cCCCccceEEcccc
Confidence 3333 45677889999864
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-24 Score=209.94 Aligned_cols=246 Identities=22% Similarity=0.310 Sum_probs=202.4
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC---ceeeEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEEc
Q 002519 630 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 630 ~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~---~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~Iwdl 704 (913)
..|.+.|.++...-.|++|||++.|++|+||.+.+. +.+.+|.+|.++|+.++|.. -|.+||++++||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 469999999999999999999999999999999843 57889999999999999965 6899999999999999998
Q ss_pred CCCCc-eeEEeccCCCCeEEEEEcCCCC-eEEEEEeCCCcEEEEEcCCC------eeeEEeeCCceEEEEecC---C---
Q 002519 705 DNPGY-SLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNG------SCTRVFKGGTAQMRFQPH---L--- 770 (913)
Q Consensus 705 ~~~~~-~~~~~~~h~~~V~sl~fsp~~~-~ll~sgs~Dg~I~iwdl~~~------~~~~~~~~~~~~v~~s~~---~--- 770 (913)
.++.. ....+..|...|++|+|.|.+- .+|++++.||.|.|++++.. +.......++++++|.|. +
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 87432 3445668999999999999743 45678889999999998765 222334557788888876 3
Q ss_pred --------CEEEEEEcCCeEEEEECCCC--eEEEEecCCCCCeEEEEEcCCC----CEEEEEeCC-eEEEEECCCCCCCc
Q 002519 771 --------GRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSG----ELLASVSED-SVRVWTVGSGSEGE 835 (913)
Q Consensus 771 --------~~ll~~~~dg~I~i~D~~t~--~~~~~l~~h~~~V~sl~~spdg----~~l~s~s~d-~I~vwdl~~~~~~~ 835 (913)
.+|++++.|+.|+||+...+ +...+|.+|.+.|+.++|.|.- .+|++++.| +|.||..+...+.-
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 56999999999999998876 3445588999999999999954 389999999 99999987443333
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002519 836 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 836 ~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 875 (913)
....++.....+..+.|+..|+.|++++.|+.|.+|.-..
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 3334444567899999999999999999999999997543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=207.50 Aligned_cols=246 Identities=20% Similarity=0.341 Sum_probs=204.3
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEe-CCCcE
Q 002519 665 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEI 743 (913)
Q Consensus 665 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs-~Dg~I 743 (913)
.+..+.+......|.+|.|+.+|.+|++++.|.+|+|||..+ ++.++++..++-.|..++|......++.+.. .|.+|
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~-g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC-CceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 345556666788899999999999999999999999999998 7788888888888999999877666664332 38999
Q ss_pred EEEEcCCCeeeEEeeCC---ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002519 744 RYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 820 (913)
Q Consensus 744 ~iwdl~~~~~~~~~~~~---~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~ 820 (913)
++.++.+.+.++.|.++ +..++.+|.+..+++++.|++|++||++..++...+.....+ .++|+|+|-++|++..
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecC
Confidence 99999999999999986 467889999999999999999999999988887776544443 4699999999999998
Q ss_pred C-eEEEEECCCCCCCc-eEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCC---eEEEEE
Q 002519 821 D-SVRVWTVGSGSEGE-CVHELS-CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL---IAALAV 893 (913)
Q Consensus 821 d-~I~vwdl~~~~~~~-~i~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~---V~~l~~ 893 (913)
. .|++||+|+..+.. ....+. ........+.|+|+|++|+.++..+.+++.|.-+|.++ .+..+... -...+|
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 8 99999999864322 222222 34667899999999999999999999999999999877 44444332 267789
Q ss_pred eCCCCEEEEEeCCCcEEEeC
Q 002519 894 STETGYVASASHDKFVKLWK 913 (913)
Q Consensus 894 spdg~~Lasgs~DG~I~IWd 913 (913)
+||+++|++|++||+|+||+
T Consensus 241 tPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred CCCCcEEEEecCCCcEEEEE
Confidence 99999999999999999996
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=231.69 Aligned_cols=252 Identities=20% Similarity=0.357 Sum_probs=216.5
Q ss_pred CCCCCCcccccccCccceeeeEeecCCCCEEE-EEEec-CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEEC
Q 002519 607 PRDAGGRGMDVSQGFSFKEANSVRASTSKVIC-CHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 684 (913)
Q Consensus 607 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~-l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fs 684 (913)
++|+..++|+.... .+.+...+.+|.+.|.+ ++|-+ ++-+|++|+.|++|.||......+..++++|...|+|+...
T Consensus 32 sRd~t~~vw~~~~~-~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~ 110 (745)
T KOG0301|consen 32 SRDGTVKVWAKKGK-QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIG 110 (745)
T ss_pred CCCCceeeeeccCc-ccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecC
Confidence 44555566655333 45566778889999988 88885 55679999999999999999999999999999999999988
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEE
Q 002519 685 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM 764 (913)
Q Consensus 685 pdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v 764 (913)
.++. |++||.|.+++||.+. .+...+.+|...|+++.+.|++ .++||+.|.+|++|.- ++++++|.+|..++
T Consensus 111 ~~~~-~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~V 182 (745)
T KOG0301|consen 111 EDGT-LISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCV 182 (745)
T ss_pred CcCc-eEecccccceEEecch---hhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhhccchhhe
Confidence 8876 9999999999999874 4666799999999999999986 4569999999999986 78888998887665
Q ss_pred E---EecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEe
Q 002519 765 R---FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 840 (913)
Q Consensus 765 ~---~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~ 840 (913)
+ +.+ +..|++++.||.|++|++ +++++.++.+|+..|+++....++..|+++++| +++||+.. .|...+
T Consensus 183 RgL~vl~-~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q~I 255 (745)
T KOG0301|consen 183 RGLAVLD-DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQVI 255 (745)
T ss_pred eeeEEec-CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEEEE
Confidence 4 444 467999999999999999 889999999999999999988888999999999 99999975 677777
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002519 841 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 841 ~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 875 (913)
......|+++.+-++|+ |++|++||.|+||..+.
T Consensus 256 ~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 256 TLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 77777899999888887 89999999999998764
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-23 Score=205.11 Aligned_cols=231 Identities=21% Similarity=0.297 Sum_probs=207.6
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002519 670 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 749 (913)
Q Consensus 670 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~ 749 (913)
.+.+|+.+|+-|.|+.+|.+|++|+.|.++.||-..+ ++.+-++.+|.+.|+|++..-+.+.++ +|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty~GHtGavW~~Did~~s~~li-TGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVWCCDIDWDSKHLI-TGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecC-CceeeeecCCCceEEEEEecCCcceee-eccccceeEEEEcC
Confidence 4678999999999999999999999999999998877 788999999999999999998877655 99999999999999
Q ss_pred CCeeeEEeeC--CceEEEEecCCCEEEEEEc-----CCeEEEEECC-------CCeEEEEecCCCCCeEEEEEcCCCCEE
Q 002519 750 NGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-----ENVVSILDAE-------TQACRLSLQGHTKPIDSVCWDPSGELL 815 (913)
Q Consensus 750 ~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~-----dg~I~i~D~~-------t~~~~~~l~~h~~~V~sl~~spdg~~l 815 (913)
+|+++..++. .+..+.|+.+++.++++.. .+.|.++|++ ..+++..+..+...++.+.|.|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9999988765 4677899999988888766 3589999998 456788888899999999999999999
Q ss_pred EEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEe
Q 002519 816 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 894 (913)
Q Consensus 816 ~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~s 894 (913)
++|.++ .|.+||++++. ..+.....|...|+.+.++++..++++++.|.+-++||+.+..++.....+.+|++.+++
T Consensus 163 i~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 999999 99999999874 455666778889999999999999999999999999999999999888899999999999
Q ss_pred CCCCEEEEEe
Q 002519 895 TETGYVASAS 904 (913)
Q Consensus 895 pdg~~Lasgs 904 (913)
|...+++.|+
T Consensus 241 P~~d~VilgG 250 (327)
T KOG0643|consen 241 PLLDHVILGG 250 (327)
T ss_pred cccceEEecC
Confidence 9888777765
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=235.34 Aligned_cols=303 Identities=16% Similarity=0.237 Sum_probs=243.0
Q ss_pred CCCCCCcccccccCcc---ceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ceeeEeccCCCCeEEE
Q 002519 607 PRDAGGRGMDVSQGFS---FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDV 681 (913)
Q Consensus 607 ~~d~~~~~~~~~~~~~---~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~--~~~~~l~~h~~~V~~l 681 (913)
++|+.++.|.+..... -....+++.|.+.|.+++...+|+.|++++.|-+|++|+...+ -++.++..|.+.|.||
T Consensus 44 GRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcl 123 (735)
T KOG0308|consen 44 GRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCL 123 (735)
T ss_pred CCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheee
Confidence 4455555555544333 2346788999999999999999999999999999999999876 6788999999999999
Q ss_pred EE-CCCCCEEEEEeCCCeEEEEEcCCCCc---------eeEEec-cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC
Q 002519 682 RF-SPSMPRLATSSFDKTVRVWDADNPGY---------SLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 750 (913)
Q Consensus 682 ~f-spdg~~Lasgs~Dg~V~Iwdl~~~~~---------~~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~ 750 (913)
++ .++...+|+|+.|+.|.|||++++.. ....+. ++...|++++-++.+ .+|++|+..+.|++||.++
T Consensus 124 a~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt 202 (735)
T KOG0308|consen 124 AYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRT 202 (735)
T ss_pred eecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccc
Confidence 99 88888999999999999999996321 122233 889999999999987 5778999999999999999
Q ss_pred CeeeEEeeCCc---eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEE
Q 002519 751 GSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 826 (913)
Q Consensus 751 ~~~~~~~~~~~---~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vw 826 (913)
++.+..+.++. ..+..+.+|..++++++||+|++||+...+|+.++..|.+.|.++..+|+-.++++|+.| .|..=
T Consensus 203 ~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 203 CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRT 282 (735)
T ss_pred ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEec
Confidence 99888888765 556788999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEE-------------------------
Q 002519 827 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL------------------------- 881 (913)
Q Consensus 827 dl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~------------------------- 881 (913)
|+++..+...+.+ ...+|..+..+....-+.+++.|+.|+-|.......+..
T Consensus 283 dl~n~~~~tlick---~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~v 359 (735)
T KOG0308|consen 283 DLRNPAKSTLICK---EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSV 359 (735)
T ss_pred ccCCchhheEeec---CCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCcee
Confidence 9987633333322 356677777776666678889999999997643221100
Q ss_pred cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 882 TAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 882 ~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
......|...++-.|.++|+|=..+|.+.+||
T Consensus 360 i~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 360 IPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred ccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 01111233344456778999999999999997
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-23 Score=207.63 Aligned_cols=255 Identities=20% Similarity=0.337 Sum_probs=199.2
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECC----CCceeeEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEE
Q 002519 630 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 630 ~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~----~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~Iwd 703 (913)
.+|.+-|.|+.|...|+++|+|+.|.+|+|||.+ +..+....+.|.+.|..|.|.+ -|..||++|.|++|+||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4788999999999999999999999999999964 4567778889999999999964 388999999999999997
Q ss_pred cCCC-----C---ceeEEeccCCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEE
Q 002519 704 ADNP-----G---YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 774 (913)
Q Consensus 704 l~~~-----~---~~~~~~~~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll 774 (913)
-... + ....++......|++|+|.|.. +..+++++.||.||||+.-.-..+..
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~------------------ 151 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ------------------ 151 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc------------------
Confidence 6321 1 2345666788899999999963 33567899999999998764322211
Q ss_pred EEEcCCeEEEEECCCC--eEEEEecCCCCCeEEEEEcCC---CCEEEEEeCC------eEEEEECCCCC-CCceEEEeec
Q 002519 775 AAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPS---GELLASVSED------SVRVWTVGSGS-EGECVHELSC 842 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~--~~~~~l~~h~~~V~sl~~spd---g~~l~s~s~d------~I~vwdl~~~~-~~~~i~~~~~ 842 (913)
|.+... ..+.....+.....|+.|++. ..+|+.|+++ .++||...... +...+.++..
T Consensus 152 ----------W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 152 ----------WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ----------chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 111100 000011235566788999974 3488988887 79999987654 6677888889
Q ss_pred CCCceEEEEEeCC----CCEEEEEEcCCeEEEEECCCCc--------------------EE-EEcccCCCeEEEEEeCCC
Q 002519 843 NGNKFHSCVFHPT----YPSLLVIGCYQSLELWNMSENK--------------------TM-TLTAHEGLIAALAVSTET 897 (913)
Q Consensus 843 ~~~~i~~l~~sp~----g~~l~s~s~dg~I~iwd~~~~~--------------------~~-~~~~h~~~V~~l~~spdg 897 (913)
+..+|+.++|.|+ ...|++++.|| |+||.+.... .+ .+..|.+.|+.+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 9999999999995 45689999999 9999987411 11 466899999999999999
Q ss_pred CEEEEEeCCCcEEEeC
Q 002519 898 GYVASASHDKFVKLWK 913 (913)
Q Consensus 898 ~~Lasgs~DG~I~IWd 913 (913)
.+|++.|+||+||+|+
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999996
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-23 Score=218.64 Aligned_cols=282 Identities=18% Similarity=0.272 Sum_probs=234.5
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECC--CCceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEEcCCC
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwdl~~~ 707 (913)
...+.|+||.|+|...+|++++.|++++||.++ ....+..+.-...+|.+.+|.|+|. .+++++....+++||+.+.
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 456889999999999999999999999999887 4456667777788999999999999 8999999999999999873
Q ss_pred Cc-eeEEeccCC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--CCceEEEEecCCCEEEEEEcCCeEE
Q 002519 708 GY-SLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVS 783 (913)
Q Consensus 708 ~~-~~~~~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~dg~I~ 783 (913)
.. .+....++. ..+..+..++++. +|+..+..|.|.+....++..+..++ +.+..++|+.++..+++++.+|.|+
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEE
Confidence 21 122233333 3566788899977 55688899999999999999887764 6678899999999999999999999
Q ss_pred EEECCCCeEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC-eEEEEECCC---CCCCceEEEeecCCCceEEEEEeCCCCE
Q 002519 784 ILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED-SVRVWTVGS---GSEGECVHELSCNGNKFHSCVFHPTYPS 858 (913)
Q Consensus 784 i~D~~t~~~~~~l~~h~~-~V~sl~~spdg~~l~s~s~d-~I~vwdl~~---~~~~~~i~~~~~~~~~i~~l~~sp~g~~ 858 (913)
+||++...+++.+..... .-+++|.+.++.|||+|++. .|.|||..+ ...++++..+..-...|+++.|+++...
T Consensus 370 v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi 449 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI 449 (514)
T ss_pred EEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence 999999999998875322 34678888999999999998 999999754 3456777777777888999999999999
Q ss_pred EEEEEcC--CeEEEEECCCCcEEE-Ec---ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 859 LLVIGCY--QSLELWNMSENKTMT-LT---AHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 859 l~s~s~d--g~I~iwd~~~~~~~~-~~---~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|++++.. ..+++..+.+..+.. +. ..-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus 450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 8888764 689999998887772 22 3346799999999999999999999999996
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=231.07 Aligned_cols=245 Identities=24% Similarity=0.334 Sum_probs=212.5
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC---CCEEEEEeCCCeEEEEEcC
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS---MPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspd---g~~Lasgs~Dg~V~Iwdl~ 705 (913)
.-+....|+|++.||+|.+||+|...|+++||++.+.+....++.|+..|.|+.|+.. .++||+++.|..|.|||+.
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 4455678999999999999999999999999999999999999999999999999853 5689999999999999998
Q ss_pred CCCceeEEeccCCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEe--------eCCceEEEEecCCCEEEEE
Q 002519 706 NPGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVF--------KGGTAQMRFQPHLGRYLAA 776 (913)
Q Consensus 706 ~~~~~~~~~~~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~--------~~~~~~v~~s~~~~~ll~~ 776 (913)
.....+.++.+|...|++|.|...| ..-+++|+.|..|.+--.........| +.....+.+.|..++++++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence 8677888999999999999998765 334459999988865443322222222 2234568899999999999
Q ss_pred EcCCeEEEEECCCCeEEEEecC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEE
Q 002519 777 AAENVVSILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 852 (913)
Q Consensus 777 ~~dg~I~i~D~~t~~~~~~l~~---h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~ 852 (913)
+.|..|+|||+.+++.++.|++ |++....+..+|.|.||++.+.| ++.+||+.++ +|+....+|...|+.+.|
T Consensus 615 cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF 691 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKF 691 (1080)
T ss_pred ecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeee
Confidence 9999999999999999999986 66778889999999999999999 9999999887 899999999999999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCC
Q 002519 853 HPTYPSLLVIGCYQSLELWNMSEN 876 (913)
Q Consensus 853 sp~g~~l~s~s~dg~I~iwd~~~~ 876 (913)
.+|.++|++.+.||.|.||.+...
T Consensus 692 ~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 692 LNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred cccchhheeecCCceEEEEECchh
Confidence 999999999999999999998653
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-23 Score=224.31 Aligned_cols=289 Identities=20% Similarity=0.258 Sum_probs=230.7
Q ss_pred CccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCCC
Q 002519 620 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDK 697 (913)
Q Consensus 620 ~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg 697 (913)
.|.-.+...+++|++.|+||...|.|.+||+|+.||+|+||.+.++++++++.. .+.|.||+|+|.+. .||++-.+.
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCc
Confidence 456677788999999999999999999999999999999999999999999874 45799999999765 333332222
Q ss_pred --------------------------------eEEEEEcCC---CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeC--C
Q 002519 698 --------------------------------TVRVWDADN---PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--D 740 (913)
Q Consensus 698 --------------------------------~V~Iwdl~~---~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~--D 740 (913)
.|..|.-.. ...-++....|...|..|.||..|++|..++.. .
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 222333221 011134455688999999999999877655543 3
Q ss_pred CcEEEEEcCCCeeeEEe---eCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 002519 741 GEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS 817 (913)
Q Consensus 741 g~I~iwdl~~~~~~~~~---~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s 817 (913)
..|.|+++...+....| ++.+..+.|+|...++++++ ...|+|||+...+.++.+.....+|.+++++|.|.-|+.
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 56899999877655444 56778899999987777655 578999999998888888878889999999999999999
Q ss_pred EeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC------CCCc-EE---EEcccCC
Q 002519 818 VSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM------SENK-TM---TLTAHEG 886 (913)
Q Consensus 818 ~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~------~~~~-~~---~~~~h~~ 886 (913)
++.| .++.||+.-.. +....+..|...+++++||+...+|++|+.|+++.||.- ..+. ++ .+.+|..
T Consensus 625 gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred ecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 9999 99999997543 566778888999999999999999999999999988842 2222 22 5677876
Q ss_pred C----eEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 887 L----IAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 887 ~----V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
. |.++.|+|...+|++++.||+|++|
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecccceEeecccCCCceEEecCCCceEEee
Confidence 5 9999999999999999999999999
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=214.10 Aligned_cols=334 Identities=19% Similarity=0.252 Sum_probs=251.8
Q ss_pred eEEeCCCcchhhhcccccccCCccCceeeecccCCC---CCCCCCCcccccccCccceeeeEeecCC-CCEEEEEEecCC
Q 002519 570 QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDT---DPRDAGGRGMDVSQGFSFKEANSVRAST-SKVICCHFSSDG 645 (913)
Q Consensus 570 ~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~---~~~d~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~fspdg 645 (913)
.|||+..+....++...-+. -....|...+.. ..+.+...-|....+.-++....++.+. .-|.|++|.++|
T Consensus 183 SVWdWqk~~~~~~vk~sne~----v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng 258 (626)
T KOG2106|consen 183 SVWDWQKKAKLGPVKTSNEV----VFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG 258 (626)
T ss_pred chhhchhhhccCcceeccce----EEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC
Confidence 78999887665544321110 011122222221 1233445567777776777777777654 569999999998
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC----------ce-----
Q 002519 646 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG----------YS----- 710 (913)
Q Consensus 646 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~----------~~----- 710 (913)
-++||..+|.|.||+..+.+..+....|.+.|.+++.-.+|.+|- |+.|..|..||-+-.. ..
T Consensus 259 -dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 259 -DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred -CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEe
Confidence 467899999999999998888888889999999999999986555 9999999999842100 00
Q ss_pred ------------------------eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEE
Q 002519 711 ------------------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 766 (913)
Q Consensus 711 ------------------------~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~ 766 (913)
.....+|.+..+.++.+|+.+ ++++|+.|+.+++|+-......+.+.....++.|
T Consensus 337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~f 415 (626)
T KOG2106|consen 337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADF 415 (626)
T ss_pred cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEccCCceeEEEEecCceeEeec
Confidence 112236888999999999866 4559999999999994444445566778889999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCC
Q 002519 767 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 845 (913)
Q Consensus 767 s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~ 845 (913)
+|.+ .++++...|...++|.++...+..... ..++++++|+|+|.+||.|+.| .|+||.+..... +....-+++..
T Consensus 416 hpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~gs 492 (626)
T KOG2106|consen 416 HPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR-KYSRVGKCSGS 492 (626)
T ss_pred cCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc-EEEEeeeecCc
Confidence 9998 999999999999999999666655554 8899999999999999999999 999999976533 33344445568
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-------------------EEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 846 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-------------------TLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 846 ~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-------------------~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
+|+.+.|++|+.+|.+-+.|-.|.+|.....+.+ ....+...|..++-+.+.+++|+|.+.
T Consensus 493 ~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~ 572 (626)
T KOG2106|consen 493 PITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDF 572 (626)
T ss_pred eeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccC
Confidence 9999999999999999999999999954433211 112355567777778888999999999
Q ss_pred CcEEEeC
Q 002519 907 KFVKLWK 913 (913)
Q Consensus 907 G~I~IWd 913 (913)
|+|+||+
T Consensus 573 g~v~lf~ 579 (626)
T KOG2106|consen 573 GKVHLFS 579 (626)
T ss_pred ceEEEEc
Confidence 9999985
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-23 Score=219.83 Aligned_cols=247 Identities=20% Similarity=0.340 Sum_probs=204.7
Q ss_pred eecCCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCC----------ceeeEeccCCCCeEEEEECCCCC-EEEEEeCC
Q 002519 629 VRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTL----------KSKTNLEEHSSLITDVRFSPSMP-RLATSSFD 696 (913)
Q Consensus 629 l~~H~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~----------~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~D 696 (913)
.-.|.+.|+.+.+-|. ..++|+.+..+.|+|||..+. ....++.+|...-++|+|++... +|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 3469999999999994 567888889999999998632 22237889999889999998654 89999999
Q ss_pred CeEEEEEcCCCCc------eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC--CeeeEE---eeCCceEEE
Q 002519 697 KTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--GSCTRV---FKGGTAQMR 765 (913)
Q Consensus 697 g~V~Iwdl~~~~~------~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~--~~~~~~---~~~~~~~v~ 765 (913)
++|++||+..... ....+.+|...|..++|++....+|+++++|+.+.|||+++ .++.+. ..+.+.+++
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence 9999999976433 35678899999999999999999999999999999999995 333333 345788999
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCC---------
Q 002519 766 FQPHLGRYLAAAA-ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGS--------- 832 (913)
Q Consensus 766 ~s~~~~~ll~~~~-dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~-~l~s~s~d-~I~vwdl~~~~--------- 832 (913)
|+|.+..++++++ |++|.+||+|+. ++++++.+|+..|..|.|+|... +|++++.| .+.|||+..-.
T Consensus 280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred eCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence 9999887666555 999999999986 68899999999999999999766 88888888 99999996532
Q ss_pred --CCceEEEeecCCCceEEEEEeCCCCEE-EEEEcCCeEEEEECCC
Q 002519 833 --EGECVHELSCNGNKFHSCVFHPTYPSL-LVIGCYQSLELWNMSE 875 (913)
Q Consensus 833 --~~~~i~~~~~~~~~i~~l~~sp~g~~l-~s~s~dg~I~iwd~~~ 875 (913)
..+.+....+|...|..+.|+|...++ ++.+.|+.+.||.+..
T Consensus 360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 234567778899999999999998864 5567788999999864
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=219.78 Aligned_cols=260 Identities=17% Similarity=0.280 Sum_probs=217.0
Q ss_pred CCCCCCcccccccCccceeeeEee--cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ceeeEeccCCCCeEEEE
Q 002519 607 PRDAGGRGMDVSQGFSFKEANSVR--ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVR 682 (913)
Q Consensus 607 ~~d~~~~~~~~~~~~~~~~~~~l~--~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~--~~~~~l~~h~~~V~~l~ 682 (913)
++.+.+++|++...-.-..+..+. .....|++|.+.+||+.|++|++-.+|.|||+... +....+....-.+.+++
T Consensus 437 gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa 516 (705)
T KOG0639|consen 437 GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 516 (705)
T ss_pred cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhh
Confidence 455677888887654444444443 24578999999999999999999999999999843 44445555556788899
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE--EeeCC
Q 002519 683 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFKGG 760 (913)
Q Consensus 683 fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~--~~~~~ 760 (913)
.+||.+..++|+.||.|+|||+.+ ...++.|.+|.+.+.||.+++||..|. +|+-|++||.||+++++.+. .|...
T Consensus 517 ~spDakvcFsccsdGnI~vwDLhn-q~~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF~SQ 594 (705)
T KOG0639|consen 517 ISPDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDFSSQ 594 (705)
T ss_pred cCCccceeeeeccCCcEEEEEccc-ceeeecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhhhhh
Confidence 999999999999999999999998 788999999999999999999988765 99999999999999987654 46677
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEE
Q 002519 761 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE 839 (913)
Q Consensus 761 ~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~ 839 (913)
+.++.++|.+.+++++-..+.|.|...... ..+.+.-|+..|.++.|.+.|+++++.+.| .+..|..--+ ..+..
T Consensus 595 IfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFq 670 (705)
T KOG0639|consen 595 IFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQ 670 (705)
T ss_pred heecccCCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceee
Confidence 888999999999999999999999887654 344566699999999999999999999999 8999998766 33433
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002519 840 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 840 ~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~ 873 (913)
.+. ...|.+|.++.|.++|++|+.|....||.+
T Consensus 671 skE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 671 SKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 332 678999999999999999999998888865
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=213.19 Aligned_cols=249 Identities=19% Similarity=0.250 Sum_probs=215.7
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
.-..+..++||...|+.+.|+++...+++++.|..|+||..........+..|..+|+.+..+|.|.||++++.||+..+
T Consensus 250 s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~F 329 (506)
T KOG0289|consen 250 SNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAF 329 (506)
T ss_pred hhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEE
Confidence 34566789999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred EEcCCCCceeEEecc--CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEE
Q 002519 702 WDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 776 (913)
Q Consensus 702 wdl~~~~~~~~~~~~--h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~ 776 (913)
.|+++ +..+..... ..-.++++.|||||- +|.+|..||.|+|||+.+...+..|.+ .+..+.|+.+|-+++++
T Consensus 330 sd~~~-g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ 407 (506)
T KOG0289|consen 330 SDISS-GSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATA 407 (506)
T ss_pred EEccC-CcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEE
Confidence 99998 544444332 334689999999965 777999999999999999998888876 46778999998899999
Q ss_pred EcCCeEEEEECCCCeEEEEecCC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeC
Q 002519 777 AAENVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 854 (913)
Q Consensus 777 ~~dg~I~i~D~~t~~~~~~l~~h-~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp 854 (913)
+.|+.|++||+|..+...++... ...|.+++|+..|.+|++++.+ .|++++-.+ ....++..+..|.+..+++.|..
T Consensus 408 add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~Fg~ 486 (506)
T KOG0289|consen 408 ADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRFGE 486 (506)
T ss_pred ecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhcccccceeeecc
Confidence 99999999999998877777643 3479999999999999999888 788777544 35678888888888899999999
Q ss_pred CCCEEEEEEcCCeEEEEEC
Q 002519 855 TYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 855 ~g~~l~s~s~dg~I~iwd~ 873 (913)
...++++++.|..++|+.+
T Consensus 487 ~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 487 HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceEEeeccchhheEEeec
Confidence 9999999999999888864
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=215.21 Aligned_cols=282 Identities=23% Similarity=0.347 Sum_probs=219.1
Q ss_pred CcceEEEEcCCCccccC---CCCeEEeCCCcchhhhcccccccCCccCceeeecccCCCCCCCCCCcccccccCccceee
Q 002519 550 SKPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 626 (913)
Q Consensus 550 ~~~~~~~s~dg~~~~~~---~~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~ 626 (913)
+.-.+.+++|+.+.+.. +.+.=|++.+|+....+- ... .+ +. ..+..+++-
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~---~~~----ev---~k----------------~~~~~~k~~ 197 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYII---ERD----EV---LK----------------SHGNPLKES 197 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCccccccc---ccc----hh---hh----------------hccCCCCcc
Confidence 34467888898887773 344558888876432111 000 00 00 011122222
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 706 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 706 (913)
. ++|...|.|++.|+||+|||+|+.|..|.||+.++.+.+..+++|.+.|.+++|-.....|+++|.|++|++|+++.
T Consensus 198 r--~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 198 R--KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred c--ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence 2 48999999999999999999999999999999999999999999999999999999889999999999999999987
Q ss_pred CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEEEcCCeEE
Q 002519 707 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVS 783 (913)
Q Consensus 707 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~~~dg~I~ 783 (913)
...+.++.+|.+.|.+|....- .+.+.+|+.|+++++|++..... ..|.+ .+.+++|.. ...+++|+.+|.|.
T Consensus 276 -~s~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In-~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 276 -LSYVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIA 351 (479)
T ss_pred -hHHHHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEec-ccceeeccCCceEE
Confidence 6678889999999999998765 44777788999999999954432 33333 345566554 47899999999999
Q ss_pred EEECCCCeEEEEecC-C-----------CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-CCceEEEeecCCCceEE
Q 002519 784 ILDAETQACRLSLQG-H-----------TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-EGECVHELSCNGNKFHS 849 (913)
Q Consensus 784 i~D~~t~~~~~~l~~-h-----------~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~-~~~~i~~~~~~~~~i~~ 849 (913)
+|++-+.+++++... | ..+|++++..|..+++++|+.+ .|++|-+..+- ....+..+. -.+.|++
T Consensus 352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNs 430 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNS 430 (479)
T ss_pred EeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEE
Confidence 999999998887642 2 1289999999999999999999 99999998762 345555555 4678999
Q ss_pred EEEeCCCCEEEEEEc
Q 002519 850 CVFHPTYPSLLVIGC 864 (913)
Q Consensus 850 l~~sp~g~~l~s~s~ 864 (913)
++|+++|++|++|..
T Consensus 431 l~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 431 LAFSNSGKRIVAGIG 445 (479)
T ss_pred EEEccCCCEEEEecc
Confidence 999999997777744
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=204.44 Aligned_cols=241 Identities=24% Similarity=0.424 Sum_probs=200.4
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC--ceeEEeccCCCCeEEEEE-cCCCCeEEEEEeCCCcEEEEEc
Q 002519 672 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDF-HPNKDDLICSCDGDGEIRYWSI 748 (913)
Q Consensus 672 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~--~~~~~~~~h~~~V~sl~f-sp~~~~ll~sgs~Dg~I~iwdl 748 (913)
..|++.|.++...--|++|||||.|++|+|+.+++.+ ..+.++.+|.++|+.++| +|.-..+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4688889888888889999999999999999999866 578899999999999999 5666679999999999999999
Q ss_pred CCCeeeEE-----eeCCceEEEEecCC--CEEEEEEcCCeEEEEECCCC---eEEEEecCCCCCeEEEEEcCC---C---
Q 002519 749 NNGSCTRV-----FKGGTAQMRFQPHL--GRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPS---G--- 812 (913)
Q Consensus 749 ~~~~~~~~-----~~~~~~~v~~s~~~--~~ll~~~~dg~I~i~D~~t~---~~~~~l~~h~~~V~sl~~spd---g--- 812 (913)
.++...+. +...+++++|.|.+ -.|+++++||.|.|++.+.. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 98854333 34567888888865 45677788999999987764 334455679999999999995 4
Q ss_pred --------CEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCC---
Q 002519 813 --------ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSEN--- 876 (913)
Q Consensus 813 --------~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g----~~l~s~s~dg~I~iwd~~~~--- 876 (913)
+.|++|+.| .|+||+...+ ....-..+..|...|+.++|.|.- .+|++++.||+|.||..+..
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 569999999 9999999876 444555688999999999999965 47999999999999987632
Q ss_pred -cEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 877 -KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 877 -~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+...+......++.+.|+..|.+|+.++.|..|.+|+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1224455778899999999999999999999999996
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-21 Score=217.45 Aligned_cols=358 Identities=16% Similarity=0.222 Sum_probs=249.8
Q ss_pred CCcceEEEEcCCCccccCCCCeEEeCCCcchhhhcccccccCCccCceeeecccCC---CCCCCCCCcccccccC-cc-c
Q 002519 549 TSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQG-FS-F 623 (913)
Q Consensus 549 ~~~~~~~~s~dg~~~~~~~~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~---~~~~d~~~~~~~~~~~-~~-~ 623 (913)
..+.+.+...+.++++++.-..|+-.+.|+...+....-. .+|...+.-.+ ....+....+|..... .. .
T Consensus 75 lp~~I~alas~~~~vy~A~g~~i~~~~rgk~i~~~~~~~~-----a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~ 149 (910)
T KOG1539|consen 75 LPDKITALASDKDYVYVASGNKIYAYARGKHIRHTTLLHG-----AKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELY 149 (910)
T ss_pred CCCceEEEEecCceEEEecCcEEEEEEccceEEEEecccc-----ceEEEEeeecceEEEEEccCcEEEEEecccccccc
Confidence 3455677788888887766666666655543332221100 12222211111 1112223344444332 11 1
Q ss_pred eeeeEeecCCCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 624 KEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspd--g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
.....++...+.|++|. +|+ =+.++.|+.+|.+.||++.+++.+.++.++...|+++.=+|--..++.|..+|+|.|
T Consensus 150 l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vii 228 (910)
T KOG1539|consen 150 LQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVII 228 (910)
T ss_pred ccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEE
Confidence 11222333333377764 443 357899999999999999999999999999999999999999899999999999999
Q ss_pred EEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----CCceEEEEecCCCEEEEEE
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~s~~~~~ll~~~ 777 (913)
++++. ++.+.+|+...+.|++++|..||..++++|+..|.+.+||++..+.+.... +.+....|.+....+++++
T Consensus 229 fNlK~-dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~ 307 (910)
T KOG1539|consen 229 FNLKF-DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG 307 (910)
T ss_pred EEccc-CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc
Confidence 99998 778888885569999999999999999999999999999999887765544 3334455555555555555
Q ss_pred cCCeEEEE--ECCCC--eEEE-----------------------------------------------------------
Q 002519 778 AENVVSIL--DAETQ--ACRL----------------------------------------------------------- 794 (913)
Q Consensus 778 ~dg~I~i~--D~~t~--~~~~----------------------------------------------------------- 794 (913)
.|+.+++| |...+ +.++
T Consensus 308 ~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~ 387 (910)
T KOG1539|consen 308 ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV 387 (910)
T ss_pred CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence 55544443 31000 0000
Q ss_pred --------------------------------------------------Eec-----CCCCCeEEEEEcCCCCEEEEEe
Q 002519 795 --------------------------------------------------SLQ-----GHTKPIDSVCWDPSGELLASVS 819 (913)
Q Consensus 795 --------------------------------------------------~l~-----~h~~~V~sl~~spdg~~l~s~s 819 (913)
.+. .....+++++.++.|++.+.|+
T Consensus 388 ~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~ 467 (910)
T KOG1539|consen 388 FSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY 467 (910)
T ss_pred cchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec
Confidence 000 0113467788888888888877
Q ss_pred CC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-------------------
Q 002519 820 ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------------------- 879 (913)
Q Consensus 820 ~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~------------------- 879 (913)
.. .|.+|++.+|-.......-..|..+|+.++..--++.+++++.+|.+++||+.++..+
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~ 547 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD 547 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence 76 8999999877333333223578899999999999999999999999999998765311
Q ss_pred -----------------------EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 880 -----------------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 880 -----------------------~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.+.+|.+.|++++|||||++|++++.|++|++||
T Consensus 548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 2345999999999999999999999999999998
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=216.14 Aligned_cols=260 Identities=17% Similarity=0.255 Sum_probs=215.3
Q ss_pred CCCCCCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECC
Q 002519 606 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 685 (913)
Q Consensus 606 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fsp 685 (913)
+..|+.+++|++... .+...++.|.+.|..|++.. ..+++++.|++|+.|.++. ..++++.+ ...+..|.-+.
T Consensus 85 Gs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~ 157 (433)
T KOG0268|consen 85 GSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHR 157 (433)
T ss_pred cccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-ccccccccccc
Confidence 344555566665543 56788999999999999987 6888999999999999875 45666654 44577888777
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--eCCceE
Q 002519 686 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQ 763 (913)
Q Consensus 686 dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~ 763 (913)
.+..++||+.+ |.|||... ..++..+.-..+.|.++.|+|....+|++|+.|+.|.+||++....++.. .-..+.
T Consensus 158 ~~~~FaTcGe~--i~IWD~~R-~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~ 234 (433)
T KOG0268|consen 158 KNSVFATCGEQ--IDIWDEQR-DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNT 234 (433)
T ss_pred ccccccccCce--eeeccccc-CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccc
Confidence 78899999876 99999986 67788888888899999999999999999999999999999999887654 446788
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEee
Q 002519 764 MRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 841 (913)
Q Consensus 764 v~~s~~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~ 841 (913)
++|+|..-.|+++..|..++.||.+.. .++....+|...|.++.|+|.|.-|++|+.| +|+||.++.+......++-
T Consensus 235 IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk- 313 (433)
T KOG0268|consen 235 ICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK- 313 (433)
T ss_pred eecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-
Confidence 999997777888888999999999986 6788889999999999999999999999999 9999999876433322221
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002519 842 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 877 (913)
Q Consensus 842 ~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~ 877 (913)
.-..|.++.|+-|..+|++|+.|+.|++|...-.+
T Consensus 314 -RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 314 -RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred -hhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 13458899999999999999999999999875443
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=208.86 Aligned_cols=337 Identities=18% Similarity=0.283 Sum_probs=250.4
Q ss_pred CCCCeEEeCCCcchhhhcccccccCCccCcee--eecccCCCCCCCCCCcccccccCccceeeeEeecCCCCEEEEEEec
Q 002519 566 SPSNQLWDDKDLELRADMDRLVEDGSLDDNVE--SFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 643 (913)
Q Consensus 566 ~~~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~--~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp 643 (913)
-+...+|+++.+-+.+..+.+..... +.|. .|+.+++...+|+.+.+..+.++ ..+..+....|.+.|.|++.-.
T Consensus 221 k~H~~Fw~~~~~~l~k~~~~fek~ek--k~Vl~v~F~engdviTgDS~G~i~Iw~~~-~~~~~k~~~aH~ggv~~L~~lr 297 (626)
T KOG2106|consen 221 KGHLYFWTLRGGSLVKRQGIFEKREK--KFVLCVTFLENGDVITGDSGGNILIWSKG-TNRISKQVHAHDGGVFSLCMLR 297 (626)
T ss_pred CceEEEEEccCCceEEEeeccccccc--eEEEEEEEcCCCCEEeecCCceEEEEeCC-CceEEeEeeecCCceEEEEEec
Confidence 34568899999888776665543332 3333 34566666666666655544444 4455555569999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcee-----------------------------------------eEeccCCCCeEEEE
Q 002519 644 DGKLLATGGHDKKAVLWHTDTLKSK-----------------------------------------TNLEEHSSLITDVR 682 (913)
Q Consensus 644 dg~~Lasgs~Dg~V~vwd~~~~~~~-----------------------------------------~~l~~h~~~V~~l~ 682 (913)
+|++|- |+.|.+|..||-. .+.+ .+..+|....+.++
T Consensus 298 ~GtllS-GgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla 375 (626)
T KOG2106|consen 298 DGTLLS-GGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLA 375 (626)
T ss_pred CccEee-cCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEE
Confidence 997666 9999999999832 1100 01225888899999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--CC
Q 002519 683 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GG 760 (913)
Q Consensus 683 fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~ 760 (913)
.+|+...|+|++.|+.|+||+ + .+.+.+. -...++.|+.|+|.| .++.|...|...+.|.++...+.... ..
T Consensus 376 ~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~-~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ 449 (626)
T KOG2106|consen 376 THPSKNQLLTCGQDKHVRLWN-D--HKLEWTK-IIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQ 449 (626)
T ss_pred cCCChhheeeccCcceEEEcc-C--CceeEEE-EecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCc
Confidence 999999999999999999999 2 3333222 245788999999998 67799999999999999976665443 46
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCCeE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceE
Q 002519 761 TAQMRFQPHLGRYLAAAAENVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 837 (913)
Q Consensus 761 ~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~--~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i 837 (913)
.+.++|+|++..+++++.|+.|+||-+..... .+.-+.+..+|+.+.|++|+++|.+.+.| .|..|..........+
T Consensus 450 ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~ 529 (626)
T KOG2106|consen 450 LSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSV 529 (626)
T ss_pred eEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCccccee
Confidence 68899999999999999999999998765432 22223355899999999999999999999 9999954332222222
Q ss_pred EEe---------------ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE----EEEcccCCCeEEEEEeCCCC
Q 002519 838 HEL---------------SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT----MTLTAHEGLIAALAVSTETG 898 (913)
Q Consensus 838 ~~~---------------~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~----~~~~~h~~~V~~l~~spdg~ 898 (913)
+.+ ..+...+..++-+...+.++++...|+|++|...-... .++.+|.+.|.+++|.-+..
T Consensus 530 kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~ 609 (626)
T KOG2106|consen 530 KDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDS 609 (626)
T ss_pred cceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCc
Confidence 111 12334455666677788889999999999998754432 37889999999999998888
Q ss_pred EEEEEeCCCcEEEeC
Q 002519 899 YVASASHDKFVKLWK 913 (913)
Q Consensus 899 ~Lasgs~DG~I~IWd 913 (913)
++++.+.|.+|..|+
T Consensus 610 ~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 610 HLISTGKDTSIMQWR 624 (626)
T ss_pred eEEecCCCceEEEEE
Confidence 888888999999996
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=217.82 Aligned_cols=235 Identities=17% Similarity=0.269 Sum_probs=190.8
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeE------------eccCCCCeEEEEECCCCC-EEEEEeCCCeE
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN------------LEEHSSLITDVRFSPSMP-RLATSSFDKTV 699 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~------------l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V 699 (913)
...|.++.|++.|..|++.+....++|+|-+....... .++|...++|.+|+|+.+ .++|++.||++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 34699999999999999888889999999875554433 357999999999999865 78999999999
Q ss_pred EEEEcCCCCceeEEec-----cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe------eC--CceEEEE
Q 002519 700 RVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KG--GTAQMRF 766 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~-----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~------~~--~~~~v~~ 766 (913)
||||+++....+..++ +..-.++.++|+++++. |++|+.||.|.+|+.........+ .. .++++.|
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence 9999998655444444 34567899999999885 779999999999998654322211 12 5789999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCC-eEEEEecCC--CCCeEEEEEcCCCCEEEEEeC-------CeEEEEECCCCCCCce
Q 002519 767 QPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGH--TKPIDSVCWDPSGELLASVSE-------DSVRVWTVGSGSEGEC 836 (913)
Q Consensus 767 s~~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h--~~~V~sl~~spdg~~l~s~s~-------d~I~vwdl~~~~~~~~ 836 (913)
+.++++|++-+.|+++++||++.. +++.+..+- ..+-+.+||+|+.++|++|.. +.+.+||..+. ..
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~ 449 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DT 449 (641)
T ss_pred ccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---ee
Confidence 999999999999999999999986 566655543 335678999999999999863 16899998765 66
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002519 837 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 871 (913)
Q Consensus 837 i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iw 871 (913)
+..+......|..|.|||.-+.|++++.||.++||
T Consensus 450 v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 450 VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 77777778889999999999999999999999887
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=197.47 Aligned_cols=281 Identities=22% Similarity=0.352 Sum_probs=217.5
Q ss_pred EeecCCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCc----------eee-----EeccCCCCeEEEEECCC-CCEE
Q 002519 628 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLK----------SKT-----NLEEHSSLITDVRFSPS-MPRL 690 (913)
Q Consensus 628 ~l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~----------~~~-----~l~~h~~~V~~l~fspd-g~~L 690 (913)
..+.|.+.|+++.+.+ .|+++++|+.||.|.|||+++.. .+. .-.+|...|.++.|.|- ...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 4567999999999988 78999999999999999997432 011 11358889999999985 4578
Q ss_pred EEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEE
Q 002519 691 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMR 765 (913)
Q Consensus 691 asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~--~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~ 765 (913)
.+++.|.+++|||..+ ......|+ ..+.|++-+++|- ...||++|..|-.|++.|+.+|.+...+.+ ++..+.
T Consensus 118 tssSFDhtlKVWDtnT-lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNT-LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccc-ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 8889999999999998 44445554 5677888888874 345888999999999999999999988876 467889
Q ss_pred EecCCCEEEEE-EcCCeEEEEECCCC-eEEEEec--------------CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002519 766 FQPHLGRYLAA-AAENVVSILDAETQ-ACRLSLQ--------------GHTKPIDSVCWDPSGELLASVSED-SVRVWTV 828 (913)
Q Consensus 766 ~s~~~~~ll~~-~~dg~I~i~D~~t~-~~~~~l~--------------~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl 828 (913)
|+|...++++. +.||.|++||++.- .+...+. .|.+.|++++|..++.++++++.| .+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 99999887665 55999999999865 3443332 466779999999999999999988 9999999
Q ss_pred CCCCCCceEEEeecCCC----ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 002519 829 GSGSEGECVHELSCNGN----KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 903 (913)
Q Consensus 829 ~~~~~~~~i~~~~~~~~----~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasg 903 (913)
.++.....-..-..+.. .+. +. +-+...++..-.++.+.++++-++..+ .+..|...|.|.++-++-..+.+|
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 88753221111111111 122 22 344455666666789999999988877 677899999999999998889999
Q ss_pred eCCCcEEEe
Q 002519 904 SHDKFVKLW 912 (913)
Q Consensus 904 s~DG~I~IW 912 (913)
..|+.|..|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999988
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=213.79 Aligned_cols=227 Identities=21% Similarity=0.269 Sum_probs=195.5
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-----
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN----- 706 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~----- 706 (913)
-.+.|.|++-+|+|.+|+.|+..|.|++|.+.+|+.+..+.+|-..|+||.|+.|+.+|+|||.||.|.+|++..
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 357899999999999999999999999999999999999999999999999999999999999999999998742
Q ss_pred ---CCceeEEeccCCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEe--eCCceEEEEecCCCEEEEEEcCC
Q 002519 707 ---PGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAEN 780 (913)
Q Consensus 707 ---~~~~~~~~~~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ll~~~~dg 780 (913)
.-+++..|..|.-+|+++...+.+ +..+++++.|.+|++||+..+..+..+ +..+.++..+|.+..+++|+.+|
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcc
Confidence 235678899999999999887652 335669999999999999999988765 45678899999999999999999
Q ss_pred eEEEEECCCC----------------eEEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEee
Q 002519 781 VVSILDAETQ----------------ACRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 841 (913)
Q Consensus 781 ~I~i~D~~t~----------------~~~~~l~~h~~--~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~ 841 (913)
.|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+.| .|+|||+.+. .+++.+.
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~---Q~iRtl~ 316 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK---QCIRTLQ 316 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH---HHHHHHh
Confidence 9999876542 34556778888 99999999999999999999 9999999765 6777776
Q ss_pred cCCCceEEEEEeCCCCEEEE
Q 002519 842 CNGNKFHSCVFHPTYPSLLV 861 (913)
Q Consensus 842 ~~~~~i~~l~~sp~g~~l~s 861 (913)
...++|+.+.+.|-.+.++.
T Consensus 317 ~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 317 TSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hhccccceeEeeccccceec
Confidence 56788888888765544444
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-24 Score=235.68 Aligned_cols=237 Identities=27% Similarity=0.473 Sum_probs=211.6
Q ss_pred eeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 002519 626 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 626 ~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 705 (913)
.+.+-.|...|.|+..-..++.+++|+.|.++-||.+.....+..|.+|+.+|.||.|+.+..+|++|+.+|+|++||++
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 34566799999999997788999999999999999999888888899999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEE
Q 002519 706 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 785 (913)
Q Consensus 706 ~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~ 785 (913)
. .+.++++.+|...|.++.|+|.+.+ +++|+.|+.+++||++...|.
T Consensus 101 e-Ak~vrtLtgh~~~~~sv~f~P~~~~-~a~gStdtd~~iwD~Rk~Gc~------------------------------- 147 (825)
T KOG0267|consen 101 E-AKIVRTLTGHLLNITSVDFHPYGEF-FASGSTDTDLKIWDIRKKGCS------------------------------- 147 (825)
T ss_pred h-hhhhhhhhccccCcceeeeccceEE-eccccccccceehhhhccCce-------------------------------
Confidence 7 7889999999999999999999764 478888998888888754443
Q ss_pred ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 002519 786 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 864 (913)
Q Consensus 786 D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~ 864 (913)
+.+.+|...|.++.|+|+|++++.+++| +++|||+..+ +.+.+|+.|...+..+.|+|..-.+..|+.
T Consensus 148 --------~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~ 216 (825)
T KOG0267|consen 148 --------HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSS 216 (825)
T ss_pred --------eeecCCcceeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCC
Confidence 3455678889999999999999999999 9999999876 788899999999999999999999999999
Q ss_pred CCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 865 YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 865 dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
|++|++||+++.+.+ ........|.+++|+++++.+++|..+
T Consensus 217 d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 217 DRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 999999999998888 555668899999999999988887654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-20 Score=204.35 Aligned_cols=263 Identities=13% Similarity=0.093 Sum_probs=194.9
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEE-EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEE
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRV 701 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~I 701 (913)
+.+..+..|. .+.+++|+++++.| ++++.++.|++||+.+++.+..+..+.. +..++|+|+++.|+++ +.|+.|++
T Consensus 22 ~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 22 EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEE
Confidence 3445555554 47789999999876 5667889999999999888877765544 5788999999987655 56899999
Q ss_pred EEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCC-CcEEEEEcCCCeeeEEee--CCceEEEEecCCCEEEEEE-
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAA- 777 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D-g~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~- 777 (913)
||+.+ ...+..+. +...+.+++|+|++..++ +++.+ ..+.+||.++++....+. .....+.|++++..+++++
T Consensus 100 ~d~~~-~~~~~~~~-~~~~~~~~~~~~dg~~l~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 100 IDIET-RKVLAEIP-VGVEPEGMAVSPDGKIVV-NTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EECCC-CeEEeEee-CCCCcceEEECCCCCEEE-EEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC
Confidence 99987 45555554 234578899999988665 55544 467788999887765432 3456688999998887665
Q ss_pred cCCeEEEEECCCCeEEEEecCCC-----C--CeEEEEEcCCCCEEEEE-eCC-eEEEEECCCCCCCceEEEeecCCCceE
Q 002519 778 AENVVSILDAETQACRLSLQGHT-----K--PIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECVHELSCNGNKFH 848 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~~h~-----~--~V~sl~~spdg~~l~s~-s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~ 848 (913)
.++.|++||+++++.+..+..+. . ....++|+|++++++++ +.+ .|.+||++++ +.+..+. +...+.
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~---~~~~~~~-~~~~~~ 252 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY---EVLDYLL-VGQRVW 252 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC---cEEEEEE-eCCCcc
Confidence 48999999999998776654321 1 23468899999975544 334 8999999765 3333332 345788
Q ss_pred EEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEEcccCCCeEEEEEeC
Q 002519 849 SCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLTAHEGLIAALAVST 895 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp 895 (913)
+++|+|++.+|+++. .++.|+|||+.+++++.........+.++|+|
T Consensus 253 ~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 253 QLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred eEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 999999999998874 58999999999999874444556678888764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-22 Score=203.63 Aligned_cols=256 Identities=20% Similarity=0.339 Sum_probs=214.7
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEE
Q 002519 647 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 726 (913)
Q Consensus 647 ~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~f 726 (913)
.|++.-.+++++ ...++.+.+|.+.|+.++-......+.+++.|.+.+||.+++ +.++..+.||.+.|++|.|
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYTGHTGSVNSIKF 198 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeecccccceeeEEe
Confidence 445555566543 356778899999999999988888999999999999999998 8899999999999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEEc------CCCe----------------------------------eeEEeeCC---ceE
Q 002519 727 HPNKDDLICSCDGDGEIRYWSI------NNGS----------------------------------CTRVFKGG---TAQ 763 (913)
Q Consensus 727 sp~~~~ll~sgs~Dg~I~iwdl------~~~~----------------------------------~~~~~~~~---~~~ 763 (913)
++.+. |+++++.|++-.||.. .... .+..+.++ +.+
T Consensus 199 h~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 199 HNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 99855 6679999999999972 1100 01112222 233
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeec
Q 002519 764 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 842 (913)
Q Consensus 764 v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~ 842 (913)
..|...+..+++++.|.+..+||+++++++..+.+|....+.++-+|.-+++++.+.| ++++||++ +....+..|.+
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQG 355 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQG 355 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecc
Confidence 4477778899999999999999999999999999999999999999999999999999 99999998 45678889999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 843 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT-MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 843 ~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~-~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|...|+++.|.-+.+ +++|+.|.+|+|||+++-+. +.....+++++.++++..+.+|+.--++..|+|||
T Consensus 356 HtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 356 HTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 999999999988765 89999999999999987654 35556778899999999888999888889999997
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=226.11 Aligned_cols=274 Identities=20% Similarity=0.367 Sum_probs=213.9
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCC----ceeeEecc---CCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcC
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEE---HSSLITDVRFSP-SMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~----~~~~~l~~---h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~ 705 (913)
..+.+|...++-..|+.++. ..++||.+... ++...++. -...+.+|+|.. +.++|||++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 34566777788888887774 36777776522 22222221 112356778874 35689999999999999998
Q ss_pred C--CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCE-EEEEEcC
Q 002519 706 N--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGR-YLAAAAE 779 (913)
Q Consensus 706 ~--~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~-ll~~~~d 779 (913)
. ..+.+..|..|...|++++|++...++|++|+.||+|++||++..+...++.+ .+..+.|+|..+. |+++...
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence 6 23456688899999999999999999999999999999999999988877765 4566889987654 5555567
Q ss_pred CeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 002519 780 NVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 857 (913)
Q Consensus 780 g~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~ 857 (913)
|.+.+||+|.. ++...+.+|.++|.|+.|+|++.+||+|+.| .|+|||+.+... ..+..+. ...++.++.|-|...
T Consensus 199 G~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~ 276 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARS 276 (839)
T ss_pred ceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCcc
Confidence 89999999986 6778889999999999999999999999999 999999976532 3333333 267899999999987
Q ss_pred EEEEEE---cCCeEEEEECCCCcEE--EEcccCCCeEEEEEeC-CCCEEEEEeCCCcEE
Q 002519 858 SLLVIG---CYQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVK 910 (913)
Q Consensus 858 ~l~s~s---~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~sp-dg~~Lasgs~DG~I~ 910 (913)
+.++.+ .|-.|+|||++..-+- ++..|...|+.++|.. |...+.+++.||+|.
T Consensus 277 ~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 277 YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred chhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 755544 3569999999877544 7889999999999965 455788999999864
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=215.95 Aligned_cols=283 Identities=20% Similarity=0.304 Sum_probs=220.9
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC--cee--e---EeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSK--T---NLEEHSSLITDVRFSPSMPRLATSSFDKTV 699 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~--~~~--~---~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 699 (913)
..+.||++.|+++.|+|.+..|++++.|+++.||.-++. --+ . ...+........-|+|++..|++-+..|-.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 345699999999999999999999999999999987643 211 1 222445668899999999999999999999
Q ss_pred EEEEcCCCCc--eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-eEEe------eCCceEEEEecCC
Q 002519 700 RVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF------KGGTAQMRFQPHL 770 (913)
Q Consensus 700 ~Iwdl~~~~~--~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~------~~~~~~v~~s~~~ 770 (913)
++|....... ....+.||.+.|.+|+|+|.|++|| +.+.|-+-|+|-.-..+. -..+ .....++++.+..
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~ 419 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED 419 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence 9999433222 2345669999999999999998666 888999999987552111 1111 1234566666655
Q ss_pred CEEEEEEcCCeEEEEECC-------------------------------------------CCe----------------
Q 002519 771 GRYLAAAAENVVSILDAE-------------------------------------------TQA---------------- 791 (913)
Q Consensus 771 ~~ll~~~~dg~I~i~D~~-------------------------------------------t~~---------------- 791 (913)
-.++.++.+..+|+|+.. ++.
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence 666667777777877642 000
Q ss_pred -----------------EEEEecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCCceEEEeecCCCceE
Q 002519 792 -----------------CRLSLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFH 848 (913)
Q Consensus 792 -----------------~~~~l~~h~~~V~sl~~spdg~~l~s~s~d------~I~vwdl~~~~~~~~i~~~~~~~~~i~ 848 (913)
.+.++.+|...|++++.+|+++++++++.. .|++|+..+. ..+..+..|.-.|+
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVT 576 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEE
Confidence 011255788889999999999999999854 5899998765 55668889999999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-----EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 849 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-----~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.++|+||+++|++.+.|+++.+|........ ....|..-|+++.|+|++.+++|+|.|++|+||.
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 9999999999999999999999988654433 4678999999999999999999999999999995
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-22 Score=210.28 Aligned_cols=240 Identities=20% Similarity=0.369 Sum_probs=195.4
Q ss_pred ccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEEcCCCCc---------eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCC
Q 002519 672 EEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGY---------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 741 (913)
Q Consensus 672 ~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwdl~~~~~---------~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg 741 (913)
..|.+.|+.+++-|... +|++.+..+.|.|||...... +-.++.+|...-++|+|++.....+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 35899999999999765 566777899999999875221 12377899998899999998888888999999
Q ss_pred cEEEEEcCCCee-------eEEeeC---CceEEEEecCCCE-EEEEEcCCeEEEEECC--CCeEEEEecCCCCCeEEEEE
Q 002519 742 EIRYWSINNGSC-------TRVFKG---GTAQMRFQPHLGR-YLAAAAENVVSILDAE--TQACRLSLQGHTKPIDSVCW 808 (913)
Q Consensus 742 ~I~iwdl~~~~~-------~~~~~~---~~~~v~~s~~~~~-ll~~~~dg~I~i~D~~--t~~~~~~l~~h~~~V~sl~~ 808 (913)
.|++||+..... ...+.+ .+..++|++.... |.+++.|+.+.|||+| +.++.....+|...|+|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 999999976432 223443 3456788887654 5556678999999999 56778888999999999999
Q ss_pred cCC-CCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCC-c-------
Q 002519 809 DPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSEN-K------- 877 (913)
Q Consensus 809 spd-g~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~I~iwd~~~~-~------- 877 (913)
+|- +.+||+|+.| +|++||+|+.. .+++.+.+|...|..+.|+|.. ..|++++.|+.+.|||+..- +
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 995 4588999988 99999999764 5899999999999999999976 46777788999999998631 1
Q ss_pred -------EEEEcccCCCeEEEEEeCCCC-EEEEEeCCCcEEEeC
Q 002519 878 -------TMTLTAHEGLIAALAVSTETG-YVASASHDKFVKLWK 913 (913)
Q Consensus 878 -------~~~~~~h~~~V~~l~~spdg~-~Lasgs~DG~I~IWd 913 (913)
++.-.+|...|..+.|+|+.. .|+|+++|+.+.||+
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 125568999999999999887 578889999999996
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-22 Score=217.34 Aligned_cols=274 Identities=23% Similarity=0.306 Sum_probs=208.5
Q ss_pred EEEEec---CCCEEEEEeCCCcEEEEECCCCce------eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Q 002519 638 CCHFSS---DGKLLATGGHDKKAVLWHTDTLKS------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 708 (913)
Q Consensus 638 ~l~fsp---dg~~Lasgs~Dg~V~vwd~~~~~~------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 708 (913)
++.|++ ...+||.+..||.|.++|...... ++....|...|.++.|-|....|++++.|.++++||++. .
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-s 132 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-S 132 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc-c
Confidence 356655 346899999999999999874332 245567999999999999777999999999999999997 5
Q ss_pred ceeEE--eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE----------EeeC-----------------
Q 002519 709 YSLRT--FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR----------VFKG----------------- 759 (913)
Q Consensus 709 ~~~~~--~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~----------~~~~----------------- 759 (913)
.++.. +.+|...|.++||.+.+..+||+|+.||.|.|||++...... .+++
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 55544 889999999999999999999999999999999997543100 0000
Q ss_pred ---Cce---EEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEe--------cCC---CCCeEEEEEcCCCCEEEEEeCC
Q 002519 760 ---GTA---QMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSL--------QGH---TKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 760 ---~~~---~v~~s~~~~~ll~~~~-dg~I~i~D~~t~~~~~~l--------~~h---~~~V~sl~~spdg~~l~s~s~d 821 (913)
.+. .+.+.-|...|++++. |+.|+|||+++....... ..| ...+.+++.+..|.+|++.+.|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 111 1456667788888777 999999999986544332 223 2357788888888877666667
Q ss_pred -eEEEEECCCCCCCceEEEeecCCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCC
Q 002519 822 -SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTE 896 (913)
Q Consensus 822 -~I~vwdl~~~~~~~~i~~~~~~~~~--i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd 896 (913)
+|++|++.+... ..+..+.++... ...-..+|++.++++|+.|...++|.+.....- .+.+|.-.|++++|.|.
T Consensus 293 ~sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 293 NSIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred CcEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 999999986532 333333333222 233457899999999999999999999877643 78899999999999874
Q ss_pred C-CEEEEEeCCCcEEEeC
Q 002519 897 T-GYVASASHDKFVKLWK 913 (913)
Q Consensus 897 g-~~Lasgs~DG~I~IWd 913 (913)
. .-+++|++|..++||+
T Consensus 372 ~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 372 ATTPVATCSDDFRVKIWR 389 (720)
T ss_pred cCCCceeeccCcceEEEe
Confidence 3 3477889999999996
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-20 Score=204.98 Aligned_cols=354 Identities=13% Similarity=0.174 Sum_probs=245.2
Q ss_pred cceEEEEcCCCcccc---CCCCeEEeCCCcchhhhcccccccCCccCceeeeccc-CCCCCCCCCCcccccccCccceee
Q 002519 551 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSH-DDTDPRDAGGRGMDVSQGFSFKEA 626 (913)
Q Consensus 551 ~~~~~~s~dg~~~~~---~~~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~-d~~~~~d~~~~~~~~~~~~~~~~~ 626 (913)
...++|+.+..-++. ++.++||++...=+ .+ ..-.|..|..++..+.. .....-.+.......++-.+++.+
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~---~~-~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF---LE-PVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCce---ee-EEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCcee
Confidence 346677776665333 67789999988422 11 22334667777776444 232222222333334445567888
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee--EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
..+....+.|++++.+|.++.++.|++||.+++++...++... .|...++.|.+|+|++++..|++||.||.|++||+
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~ 183 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDV 183 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEc
Confidence 8888899999999999999999999999988888887766543 35556789999999999999999999999999999
Q ss_pred CCCCceeE------Ee-ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---eCCceEEEEecCCCEEE
Q 002519 705 DNPGYSLR------TF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYL 774 (913)
Q Consensus 705 ~~~~~~~~------~~-~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~s~~~~~ll 774 (913)
..+..... .+ ++...-|+++.|..++ .|++|+.-|+|.+||...+..+..+ ...+.+++..+++++++
T Consensus 184 ~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 184 KSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred CCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE
Confidence 87443221 11 1244568888888654 5779999999999999999887665 45678899999999999
Q ss_pred EEEcCCeEEEEECCCCeE----EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC-------------------
Q 002519 775 AAAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS------------------- 830 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~~~----~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~------------------- 830 (913)
+++.|+.|..|...+.+. ......|...|.+++..++ .+++|+.| .+.+-..+.
T Consensus 262 saGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~ 339 (691)
T KOG2048|consen 262 SAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVS 339 (691)
T ss_pred EccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceee
Confidence 999999999888776633 2223457888888888765 66666666 444433221
Q ss_pred -----------------------C------CCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC-------
Q 002519 831 -----------------------G------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS------- 874 (913)
Q Consensus 831 -----------------------~------~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~------- 874 (913)
. .....++........|.+++.+|+|.+|+.+... .++||.+.
T Consensus 340 ~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~ 418 (691)
T KOG2048|consen 340 VAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKV 418 (691)
T ss_pred cCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeE
Confidence 1 0011112222234568899999999988888721 12222211
Q ss_pred -----------------------------------------CCcEE-----EEcccCCCeEEEEEeCCCCEEEEEeCCCc
Q 002519 875 -----------------------------------------ENKTM-----TLTAHEGLIAALAVSTETGYVASASHDKF 908 (913)
Q Consensus 875 -----------------------------------------~~~~~-----~~~~h~~~V~~l~~spdg~~Lasgs~DG~ 908 (913)
+.... .-.+....|..+..+++|.+||+.+.+|.
T Consensus 419 ~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~ 498 (691)
T KOG2048|consen 419 INVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQ 498 (691)
T ss_pred EEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccce
Confidence 11100 00123457899999999999999999999
Q ss_pred EEEeC
Q 002519 909 VKLWK 913 (913)
Q Consensus 909 I~IWd 913 (913)
|.+|+
T Consensus 499 I~v~n 503 (691)
T KOG2048|consen 499 IFVYN 503 (691)
T ss_pred EEEEE
Confidence 99996
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.7e-21 Score=216.49 Aligned_cols=275 Identities=14% Similarity=0.233 Sum_probs=216.2
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Q 002519 630 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 708 (913)
Q Consensus 630 ~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 708 (913)
.+|+..-+.|+|.++|.+|++++.||.|++|+.... +...++..+...|.+++.. ..+|++|+.+++|.+|.+.+ +
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps-~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS-G 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC-C
Confidence 368999999999999999999999999999998765 5555665588888888875 44999999999999999987 4
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---eCCceEEEEecCCCEEEEEEcCCeEEEE
Q 002519 709 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSIL 785 (913)
Q Consensus 709 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~s~~~~~ll~~~~dg~I~i~ 785 (913)
..-..+....-++.+++|+.+|. +++.|++|-.|++.++.+....+.+ ++.+.++.|+|.+..+++.+.||.|+||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CccceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 33334444567899999999877 5568999999999999887666555 4567889999999999999999999999
Q ss_pred ECCCCeEEEEecCC--------CCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC
Q 002519 786 DAETQACRLSLQGH--------TKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 786 D~~t~~~~~~l~~h--------~~~V~sl~~spdg~-~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g 856 (913)
|+.++.+.+++.+- ...+..++|+|+|. +++.+.++.|++|+.........+. .+.+...+..+.|+|.|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr-~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR-DKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec-ccccccceEEEEEcCCC
Confidence 99999887776542 34567789999965 5555555599999998764332222 22334459999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 857 PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 857 ~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
.||++++.+|.|.|||+.+... ......|.|++|.|++..|-.-...|...+|
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999999999999998222 3445689999999998866555545544443
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-20 Score=204.44 Aligned_cols=277 Identities=15% Similarity=0.215 Sum_probs=227.9
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC-CceeeEeccC-CCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
+.+.--...|+|+||+.+.+.||.+-.||.|.||++.. .-....+.++ ...|.+|+|+ ++.+|++.+.+|.|.-||+
T Consensus 19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec
Confidence 34445567899999999999999999999999999985 4555666665 4679999999 5668999999999999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-----eCCceEEEEecCCCEEEEEEcC
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----~~~~~~v~~s~~~~~ll~~~~d 779 (913)
.+ .+....+....+.|++++.+|.+. .++.|++||.++++++..++..... ++.+.++.|.+++.+++.|+.|
T Consensus 98 ~~-lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 98 HT-LKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred cc-CceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 98 777788888889999999999876 5558889998889998887765432 3567889999999999999999
Q ss_pred CeEEEEECCCCeEEEEec-----C---CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEE
Q 002519 780 NVVSILDAETQACRLSLQ-----G---HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~-----~---h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~ 851 (913)
|.|++||+.++..++... . ...-|+++.|-.++.++..-+.++|.+||...+ ..+..+..|...|.+++
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl~La 252 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG---TLIQSHSCHDADVLALA 252 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc---chhhhhhhhhcceeEEE
Confidence 999999999997666221 1 223478888886665444334449999999776 77888889999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcE-----EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 852 FHPTYPSLLVIGCYQSLELWNMSENKT-----MTLTAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 852 ~sp~g~~l~s~s~dg~I~iwd~~~~~~-----~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
..+++.++++++.|+.|..|...+++. .....|...|.+++..++ .|++|+.|+.+.|
T Consensus 253 v~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 253 VADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred EcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 999999999999999999998877643 145578999999999888 8999999998875
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=201.13 Aligned_cols=292 Identities=17% Similarity=0.277 Sum_probs=215.6
Q ss_pred CccceeeeEeecCCCCEEEEEEecCC--CEEEEEeCCCcEEEEECC----CCceeeEeccCCCCeEEEEECCCC-CEEEE
Q 002519 620 GFSFKEANSVRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSM-PRLAT 692 (913)
Q Consensus 620 ~~~~~~~~~l~~H~~~V~~l~fspdg--~~Lasgs~Dg~V~vwd~~----~~~~~~~l~~h~~~V~~l~fspdg-~~Las 692 (913)
...+.....++.+.++|+|++|+|.. +++|+|+.-|.|-+||+. ....+..+..|..+|.+|.|+|.+ ..|++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 34566777888999999999999955 589999999999999995 234466788899999999999964 58999
Q ss_pred EeCCCeEEEEEcCCCC-ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----eEEeeCCceEEEEe
Q 002519 693 SSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQ 767 (913)
Q Consensus 693 gs~Dg~V~Iwdl~~~~-~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~~~~~~v~~s 767 (913)
.|.||+||+-|+++.- ..+.........+.++.|+.+...++ .++.=|...+||++++.. ++..+..+..++++
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 9999999999998622 12233333455677788888766665 666667999999998754 23334477889999
Q ss_pred cCCCEE-EEEEcCCeEEEEECCCCe----EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-CCCceEEEe
Q 002519 768 PHLGRY-LAAAAENVVSILDAETQA----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHEL 840 (913)
Q Consensus 768 ~~~~~l-l~~~~dg~I~i~D~~t~~----~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~-~~~~~i~~~ 840 (913)
|-..++ ++++.|++++|||++... ++.....|...|.++.|+|++-.|++.+.| .|+|||.... ........+
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence 988765 455669999999998742 234455699999999999987778888888 9999998411 111111121
Q ss_pred e---cCCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEccc-CCCeEE-EEEeCCCCEEEE-EeCCCcEEE
Q 002519 841 S---CNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAA-LAVSTETGYVAS-ASHDKFVKL 911 (913)
Q Consensus 841 ~---~~~~~--i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h-~~~V~~-l~~spdg~~Las-gs~DG~I~I 911 (913)
. .+... .....|.|+..+|++|-.-..|.|||-..++.+ .+... ...|.+ ..|+|-+..+++ ++..|.|+|
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 1 11222 334579999999999999999999999998855 43332 235555 489998884444 556789999
Q ss_pred e
Q 002519 912 W 912 (913)
Q Consensus 912 W 912 (913)
|
T Consensus 492 f 492 (498)
T KOG4328|consen 492 F 492 (498)
T ss_pred E
Confidence 8
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=189.95 Aligned_cols=225 Identities=18% Similarity=0.319 Sum_probs=183.8
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCce
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 710 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~ 710 (913)
.|..+|.+|+|.+ ...+++|+.||.|+++|+.++. ...+..|...|.||.+++....+++||.|++|++||.+. ...
T Consensus 52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~-~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~ 128 (323)
T KOG1036|consen 52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN-EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVV 128 (323)
T ss_pred ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc-ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-ccc
Confidence 3788999999987 4588999999999999999876 455667999999999999999999999999999999986 334
Q ss_pred eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-----EEeeCCceEEEEecCCCEEEEEEcCCeEEEE
Q 002519 711 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-----RVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 785 (913)
Q Consensus 711 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~-----~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~ 785 (913)
...+. ....|.++... ++ .|++|..|..|.+||+++.... ..++-.+.++++.|.+.-+++++-||+|.+=
T Consensus 129 ~~~~d-~~kkVy~~~v~--g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 129 VGTFD-QGKKVYCMDVS--GN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVE 204 (323)
T ss_pred ccccc-cCceEEEEecc--CC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEE
Confidence 44443 33489888886 33 4558888999999999986543 3455567889999988899999999999887
Q ss_pred ECCCC----eEEEEecCCCC---------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEE
Q 002519 786 DAETQ----ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 786 D~~t~----~~~~~l~~h~~---------~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~ 851 (913)
.++.. +..+.|+.|.. +|++|+|+|-...|++|+.| .|.+||+.+. +.+..+......|.+++
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLS 281 (323)
T ss_pred ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEE
Confidence 76665 55667777753 69999999998899999999 9999999776 44555555567899999
Q ss_pred EeCCCCEEEEEEcC
Q 002519 852 FHPTYPSLLVIGCY 865 (913)
Q Consensus 852 ~sp~g~~l~s~s~d 865 (913)
|+.+|..|+++++.
T Consensus 282 fs~dG~~LAia~sy 295 (323)
T KOG1036|consen 282 FSMDGSLLAIASSY 295 (323)
T ss_pred eccCCCeEEEEech
Confidence 99999999999863
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=195.30 Aligned_cols=246 Identities=21% Similarity=0.422 Sum_probs=197.5
Q ss_pred eecCCCCEEEEEEecCC--CEEEEEeCCCcEEEEECC----------------CCceeeEeccCCCCeEEEEECCCC-CE
Q 002519 629 VRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTD----------------TLKSKTNLEEHSSLITDVRFSPSM-PR 689 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg--~~Lasgs~Dg~V~vwd~~----------------~~~~~~~l~~h~~~V~~l~fspdg-~~ 689 (913)
.-.|.+.|..+..++-+ .+.|+-+..|.|.||++. ..+.+.++.+|...-+.|+|+|-. ..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34688888888877754 466667788999999974 245678899999999999999943 36
Q ss_pred EEEEeCCCeEEEEEcCCCCcee--EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEe
Q 002519 690 LATSSFDKTVRVWDADNPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQ 767 (913)
Q Consensus 690 Lasgs~Dg~V~Iwdl~~~~~~~--~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s 767 (913)
|++|..-+.|++|...++...+ ..|.+|...|..|+|+|..+.+|++|+.||+|+|||++.+....
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~------------ 294 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA------------ 294 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc------------
Confidence 8888888899999998855443 45678999999999999999999999999999999999763211
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCc
Q 002519 768 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 846 (913)
Q Consensus 768 ~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~ 846 (913)
++ ..+.|...|+.|.|+....+|++|++| +++|||+|.......+..++.|..+
T Consensus 295 ------------------------~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p 349 (440)
T KOG0302|consen 295 ------------------------AV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP 349 (440)
T ss_pred ------------------------ee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence 11 125688999999999988899999999 9999999998888899999999999
Q ss_pred eEEEEEeCC-CCEEEEEEcCCeEEEEECCCCcE-----------------EEEccc--CCCeEEEEEeCCC-CEEEEEeC
Q 002519 847 FHSCVFHPT-YPSLLVIGCYQSLELWNMSENKT-----------------MTLTAH--EGLIAALAVSTET-GYVASASH 905 (913)
Q Consensus 847 i~~l~~sp~-g~~l~s~s~dg~I~iwd~~~~~~-----------------~~~~~h--~~~V~~l~~spdg-~~Lasgs~ 905 (913)
|+++.|+|. ...|++++.|..|.|||+....- ..+.-| ...|..+.|++.- .+|++.+.
T Consensus 350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~ 429 (440)
T KOG0302|consen 350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAI 429 (440)
T ss_pred eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecc
Confidence 999999995 45688888999999999864321 023334 3468888998743 48888888
Q ss_pred CCcEEEe
Q 002519 906 DKFVKLW 912 (913)
Q Consensus 906 DG~I~IW 912 (913)
|| +.||
T Consensus 430 dG-fnVf 435 (440)
T KOG0302|consen 430 DG-FNVF 435 (440)
T ss_pred cc-eeEE
Confidence 98 5555
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=198.89 Aligned_cols=256 Identities=15% Similarity=0.220 Sum_probs=202.1
Q ss_pred EeCC-CcEEEEECCCCceeeEeccCC-CCeEEEEECCCCCEEEEEeC-CCeEEEEEcCCCCceeEEeccCCCCeEEEEEc
Q 002519 651 GGHD-KKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 727 (913)
Q Consensus 651 gs~D-g~V~vwd~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~-Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs 727 (913)
++.| .++.+||+.+|....++++.. ..-.++..- .+.+++++.. ...|.+|.+....... ...-..+.|.++.-+
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecC
Confidence 3444 459999999999999988752 211112111 2356666654 5579999997633322 333456889999999
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEEEcCCeEEEEECC---------CCeEEEE
Q 002519 728 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAE---------TQACRLS 795 (913)
Q Consensus 728 p~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~~~dg~I~i~D~~---------t~~~~~~ 795 (913)
|+|.+ ++.|...|.|++|.+.+|..+..+.. .++++.|+-++..+++++.||.|.+|++. +-++++.
T Consensus 91 n~G~~-l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 91 NLGYF-LLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred CCceE-EEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 99764 44666899999999999998887765 46889999999999999999999999653 3478889
Q ss_pred ecCCCCCeEEEEEcCCC--CEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002519 796 LQGHTKPIDSVCWDPSG--ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 872 (913)
Q Consensus 796 l~~h~~~V~sl~~spdg--~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd 872 (913)
+..|.-+|+.+...+.| .+|++++.| ++++||+..+ ..+..+.. ...+.+|+.+|.++.+++|+.+|.|.+.+
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEec-CCcceeEEEcccccEEEecCCcceEEeee
Confidence 99999999999988764 489999999 9999999877 44444433 67899999999999999999999999887
Q ss_pred CCCCc-----------------EEEEcccCC--CeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 873 MSENK-----------------TMTLTAHEG--LIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 873 ~~~~~-----------------~~~~~~h~~--~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+.... ...+.+|.+ .|+|++++-||.+|++|+.||.|+|||
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 64322 125678888 999999999999999999999999997
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=211.26 Aligned_cols=239 Identities=17% Similarity=0.255 Sum_probs=200.8
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002519 672 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 751 (913)
Q Consensus 672 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~ 751 (913)
..|....+.|+|.++|+.|++|+.||.|++|+..+....-.++..+...|.+++.... .|++|+.+++|.+|.+.++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCC
Confidence 3688889999999999999999999999999987743334444447788888877533 5669999999999999876
Q ss_pred e---eeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEE
Q 002519 752 S---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT 827 (913)
Q Consensus 752 ~---~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwd 827 (913)
. .+..|......++|+.+|.++++|+.|-.|++.+..+....+.+++|+.+|.+|.|+|.+++||+.+.| .|+|||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 4 567778889999999999999999999999999999999999999999999999999999999999888 999999
Q ss_pred CCCCCCCceEEEee----cC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---EEcccCCCeEEEEEeCCCCE
Q 002519 828 VGSGSEGECVHELS----CN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLTAHEGLIAALAVSTETGY 899 (913)
Q Consensus 828 l~~~~~~~~i~~~~----~~-~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~---~~~~h~~~V~~l~~spdg~~ 899 (913)
+.++.....+..+. .. ...+..++|+|++..+++.+.|+.|++|+..+.... ....+...+.++.|+|+|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 98763322221111 11 344677899999999999999999999999988765 23345556999999999999
Q ss_pred EEEEeCCCcEEEeC
Q 002519 900 VASASHDKFVKLWK 913 (913)
Q Consensus 900 Lasgs~DG~I~IWd 913 (913)
||+++.||.|.|||
T Consensus 247 iAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 247 IAASTLDGQILVWN 260 (933)
T ss_pred EeeeccCCcEEEEe
Confidence 99999999999997
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=201.23 Aligned_cols=257 Identities=17% Similarity=0.250 Sum_probs=202.2
Q ss_pred CEEEEEEecCCC-EEEEEeCCCcEEEEECCC--CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 002519 635 KVICCHFSSDGK-LLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 635 ~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
.|..++|+.... .+|+.+.|+.|++|.-.. ++....-+.....-.||+......|+++|+..+.|+|||++. +.+.
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~h 114 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRA-KLIH 114 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHH-HHHh
Confidence 389999988663 334455788999997542 222222222222444555555558999999999999999996 7888
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC----ceEEEEecCCCEEEE-EEcCCeEEEEE
Q 002519 712 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRYLA-AAAENVVSILD 786 (913)
Q Consensus 712 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~s~~~~~ll~-~~~dg~I~i~D 786 (913)
+.+++|...|+++.|+-.+. +|++++..|.|.|..+.++.....|..+ +.-+.|++....+++ ++.+|.|.+||
T Consensus 115 r~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred hhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 99999999999999987644 6779999999999999998877777654 235778888877665 45579999999
Q ss_pred CCCCeEEEEe-cCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 002519 787 AETQACRLSL-QGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 863 (913)
Q Consensus 787 ~~t~~~~~~l-~~h~~~V~sl~~spdg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s 863 (913)
+....+++.+ +.|..+...|||+|... +|++.+.| .|.+||++......++.. ..++..++|.++|.+|++|.
T Consensus 194 v~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 194 VQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY----SHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred ccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee----cCCcceeeecCCceEEEeec
Confidence 9988776654 56999999999999665 88899999 999999987644444432 67899999999999999999
Q ss_pred cCCeEEEEECCCCcE--EEEcccCCCeEEEEEeCCC
Q 002519 864 CYQSLELWNMSENKT--MTLTAHEGLIAALAVSTET 897 (913)
Q Consensus 864 ~dg~I~iwd~~~~~~--~~~~~h~~~V~~l~~spdg 897 (913)
..|.|..||++..+. ..+.+|+..|++++|-+.-
T Consensus 270 s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 270 SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999987653 3788999999999997764
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=198.96 Aligned_cols=241 Identities=22% Similarity=0.420 Sum_probs=190.2
Q ss_pred EEEEEec-------CCCEEEEEeCCCcEEEEECCC---CceeeE------------------eccCCCCeEEEEECCCC-
Q 002519 637 ICCHFSS-------DGKLLATGGHDKKAVLWHTDT---LKSKTN------------------LEEHSSLITDVRFSPSM- 687 (913)
Q Consensus 637 ~~l~fsp-------dg~~Lasgs~Dg~V~vwd~~~---~~~~~~------------------l~~h~~~V~~l~fspdg- 687 (913)
.|++|.. .|+|+|.|+.|..|.|||++- -.+..+ -.+|+..|.++.|+..-
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5777743 357999999999999999861 111111 22689999999998764
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC---CeeeEEeeCCceEE
Q 002519 688 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRVFKGGTAQM 764 (913)
Q Consensus 688 ~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~---~~~~~~~~~~~~~v 764 (913)
..||+||.|.+|++||+.+ +.+..++..|...|.++.|+|....++++|+.|++|.+.|.+. ......+.+.+..+
T Consensus 257 nVLaSgsaD~TV~lWD~~~-g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDT-GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred eeEEecCCCceEEEEEcCC-CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 4789999999999999998 8888999999999999999999999999999999999999994 34456678889999
Q ss_pred EEecCCC-EEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCCceEEEe
Q 002519 765 RFQPHLG-RYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHEL 840 (913)
Q Consensus 765 ~~s~~~~-~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~ 840 (913)
.|.+... .++++..||+|+-+|+|.. ++++++..|...|.+|+++..-. ++++++.+ .|++|++.... .+.+...
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~-~~~v~~~ 414 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS-PKSVKEH 414 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC-Ccccccc
Confidence 9999875 4566667899999999986 99999999999999999998655 78888888 99999996432 2223222
Q ss_pred ecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCcEE
Q 002519 841 SCNGNKFHSCVFHPTYPS-LLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 841 ~~~~~~i~~l~~sp~g~~-l~s~s~dg~I~iwd~~~~~~~ 879 (913)
...-+...|.++.|+-.+ +++|+..+.++|||+.+...+
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 222334666777787665 455566668999999876543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-22 Score=219.71 Aligned_cols=198 Identities=23% Similarity=0.381 Sum_probs=181.6
Q ss_pred eeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
.+..|.+|...|.||.|+.+..+|++|+.+|+|+|||++..+.++++.+|...|.+|.|+|-+.+++.|+.|+.+++||+
T Consensus 62 ~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~ 141 (825)
T KOG0267|consen 62 AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI 141 (825)
T ss_pred hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhh
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---CCceEEEEecCCCEEEEEEcCCe
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENV 781 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~s~~~~~ll~~~~dg~ 781 (913)
+. ..+...+.+|...|.++.|+|+|. +++++++|.+|+|||+..|+....|+ +.+..+.|+|..-.+..|+.|++
T Consensus 142 Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 142 RK-KGCSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT 219 (825)
T ss_pred hc-cCceeeecCCcceeEEEeecCCCc-eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce
Confidence 97 668899999999999999999977 56699999999999999999998888 55667788998888888899999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEE
Q 002519 782 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVR 824 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~ 824 (913)
|++||+++.+.+...+.....|.+++|+++++.+++|....++
T Consensus 220 v~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 220 VRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred eeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 9999999999998888888899999999999999988877544
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-21 Score=223.75 Aligned_cols=242 Identities=19% Similarity=0.362 Sum_probs=201.9
Q ss_pred CCCEEEEEEecCCCE----EEEEeCCCcEEEEECCC------CceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEE
Q 002519 633 TSKVICCHFSSDGKL----LATGGHDKKAVLWHTDT------LKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRV 701 (913)
Q Consensus 633 ~~~V~~l~fspdg~~----Lasgs~Dg~V~vwd~~~------~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~I 701 (913)
..+.++++|.+.|.. ||.|..||.|.+||... ...+.++..|++.|..|.|++... +||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 456789999987764 89999999999999864 245567788999999999999866 9999999999999
Q ss_pred EEcCCCCceeEE-eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC-----CceEEEEecCCC-EEE
Q 002519 702 WDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLG-RYL 774 (913)
Q Consensus 702 wdl~~~~~~~~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~s~~~~-~ll 774 (913)
||+.+....... -....+.|.+|+|+..-.++|++++.+|.+.|||++..+.+-.+.. +...+.|+|+.. .++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999874433332 2235678999999998889999999999999999999877766543 345789999985 455
Q ss_pred EEEcCC---eEEEEECCCC-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceE
Q 002519 775 AAAAEN---VVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 848 (913)
Q Consensus 775 ~~~~dg---~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg-~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~ 848 (913)
+++.|. .|.+||+|.- .++.++.+|...|.++.|++.+ ++|++++.| .|.+|+.+++ +.+.++....+++.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~f 300 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCF 300 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCccee
Confidence 555543 8999999875 6777888999999999999966 799999999 9999999887 78888888889999
Q ss_pred EEEEeCCCC-EEEEEEcCCeEEEEECCCCc
Q 002519 849 SCVFHPTYP-SLLVIGCYQSLELWNMSENK 877 (913)
Q Consensus 849 ~l~~sp~g~-~l~s~s~dg~I~iwd~~~~~ 877 (913)
.+.|+|... .|++.+.||.|.||.+.+..
T Consensus 301 dv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 301 DVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999887 78888999999999987665
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-20 Score=191.70 Aligned_cols=315 Identities=18% Similarity=0.225 Sum_probs=227.7
Q ss_pred CceeeecccCCCCCCCCCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC------Cce
Q 002519 594 DNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------LKS 667 (913)
Q Consensus 594 ~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~------~~~ 667 (913)
-+|+.|++.....+.....+.+.....-.--+.+.+.+|.+.|.+|.||.++.+||+|+.|..++||+++. .+.
T Consensus 17 ~~i~~FL~QR~i~~~~~~~k~F~~~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KP 96 (609)
T KOG4227|consen 17 FKIESFLCQREIGSVKSVVKTFRPDFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKP 96 (609)
T ss_pred ceeeeeeeecccCCChhhhhhhchhhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCC
Confidence 35677777665555444444333322222234556789999999999999999999999999999999863 234
Q ss_pred eeEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEec--cCCCCeEEEEEcCCCCeEEEEEeCCCcEE
Q 002519 668 KTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIR 744 (913)
Q Consensus 668 ~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~--~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~ 744 (913)
+.... .|...|.|++|....+.|++|..+++|.+.|+++ ...+..+. ...+.|+.+..+|.. ++|++.+.++.|.
T Consensus 97 I~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt-~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~ 174 (609)
T KOG4227|consen 97 IGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET-KQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVS 174 (609)
T ss_pred ceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccc-ceeeeeecccCcccceeecccCCCC-ceEEEEecCceEE
Confidence 44333 3568999999999999999999999999999998 55555554 233589999999984 4666889999999
Q ss_pred EEEcCCCe------eeEEeeCCceEEEEecCCCEEEEE-EcCCeEEEEECCCCe-EEEEec---C---CCCCeEEEEEcC
Q 002519 745 YWSINNGS------CTRVFKGGTAQMRFQPHLGRYLAA-AAENVVSILDAETQA-CRLSLQ---G---HTKPIDSVCWDP 810 (913)
Q Consensus 745 iwdl~~~~------~~~~~~~~~~~v~~s~~~~~ll~~-~~dg~I~i~D~~t~~-~~~~l~---~---h~~~V~sl~~sp 810 (913)
+||++... |...+......+.|+|....++++ ...+.+-+||.+... .+.... + ......++.|+|
T Consensus 175 ~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~ 254 (609)
T KOG4227|consen 175 FIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP 254 (609)
T ss_pred EEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC
Confidence 99998754 222223345668899988766554 557889999998753 222211 1 122346788999
Q ss_pred CCCEEEEEeCC-eEEEEECCCCCCCceEEEeec------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--------
Q 002519 811 SGELLASVSED-SVRVWTVGSGSEGECVHELSC------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-------- 875 (913)
Q Consensus 811 dg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~------~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~-------- 875 (913)
+|..|.+.-.+ .-.+||+.+.. ..+..+.. ....+.+|+|..+.. |++|+.+-.|++|.+..
T Consensus 255 ~G~Q~msiRR~~~P~~~D~~S~R--~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~ 331 (609)
T KOG4227|consen 255 SGNQFMSIRRGKCPLYFDFISQR--CFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFT 331 (609)
T ss_pred CCCeehhhhccCCCEEeeeeccc--ceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCcc
Confidence 99988877777 67788886531 12222221 122466778877765 88888888999998742
Q ss_pred ----------------CcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 876 ----------------NKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 876 ----------------~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+....+.+|.+.++.+.|++...+|++.+..+.|+||-
T Consensus 332 ~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 332 QIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 12336789999999999999999999999999999993
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.8e-20 Score=186.69 Aligned_cols=288 Identities=19% Similarity=0.351 Sum_probs=219.6
Q ss_pred cceeeeEe-ecCCCCEEEEEEec-----CCCEEEEEeCCCcEEEEECCCCc---eeeEec--cCCCCeEEEEECCC----
Q 002519 622 SFKEANSV-RASTSKVICCHFSS-----DGKLLATGGHDKKAVLWHTDTLK---SKTNLE--EHSSLITDVRFSPS---- 686 (913)
Q Consensus 622 ~~~~~~~l-~~H~~~V~~l~fsp-----dg~~Lasgs~Dg~V~vwd~~~~~---~~~~l~--~h~~~V~~l~fspd---- 686 (913)
.++....+ +.|+.+|..++|+. ....+|+++ ...|.||.....- .+..+. .|......++|+-|
T Consensus 26 ~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~ 104 (385)
T KOG1034|consen 26 SYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTG 104 (385)
T ss_pred ceEeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCC
Confidence 55555555 46889999999984 224666665 4578888776322 222222 36777888888764
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC------C
Q 002519 687 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------G 760 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~------~ 760 (913)
..+||.++.-|.|||.|+.+ +.+...+.+|...|+.|.|+|+...|+++++.|-.||+|++.+..|+..|.+ +
T Consensus 105 ~p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred CeeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence 34789999999999999998 7888999999999999999999999999999999999999999999998854 5
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCCe------EE---------------------E-EecCCCCCeEEEEEcCCC
Q 002519 761 TAQMRFQPHLGRYLAAAAENVVSILDAETQA------CR---------------------L-SLQGHTKPIDSVCWDPSG 812 (913)
Q Consensus 761 ~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~------~~---------------------~-~l~~h~~~V~sl~~spdg 812 (913)
+.++.|+.++.++++++.|..|.+|++...+ +. + +...|...|.|+.|- |
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g 261 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G 261 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h
Confidence 6789999999999999999999999997321 11 0 122366677777775 5
Q ss_pred CEEEEEeCC-eEEEEECCCC-----------CCCceEEEeecCCCceE--EEEEeCCCCEEEEEEcCCeEEEEECCCCcE
Q 002519 813 ELLASVSED-SVRVWTVGSG-----------SEGECVHELSCNGNKFH--SCVFHPTYPSLLVIGCYQSLELWNMSENKT 878 (913)
Q Consensus 813 ~~l~s~s~d-~I~vwdl~~~-----------~~~~~i~~~~~~~~~i~--~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~ 878 (913)
+++++-+-+ .|..|....- .....+.+++.....|+ ..+|.+-.+.|+.|...|.|++||++..+.
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 788887776 9999987211 11123344443343444 445677789999999999999999987765
Q ss_pred E-----EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 879 M-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 879 ~-----~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
. ........|...+|+.|+.+|+..++|++|.-||
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 3 2233456899999999999999999999999886
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-21 Score=224.77 Aligned_cols=274 Identities=19% Similarity=0.282 Sum_probs=216.3
Q ss_pred EEEEEEecCCC-EEEEEe----------CCCcEEEEECCCCc------eeeEeccCCCCeEEEEECCCCCE----EEEEe
Q 002519 636 VICCHFSSDGK-LLATGG----------HDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPR----LATSS 694 (913)
Q Consensus 636 V~~l~fspdg~-~Lasgs----------~Dg~V~vwd~~~~~------~~~~l~~h~~~V~~l~fspdg~~----Lasgs 694 (913)
--.++|+|++. +||+|. .+.++-||.++... .+..+. -....++|+|.+.+.. ||.|.
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ 87 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGL 87 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccc
Confidence 34578999886 566543 34566677654222 222222 3456889999987765 88889
Q ss_pred CCCeEEEEEcCCC-----CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-----eCCceEE
Q 002519 695 FDKTVRVWDADNP-----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQM 764 (913)
Q Consensus 695 ~Dg~V~Iwdl~~~-----~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----~~~~~~v 764 (913)
+||.|.+||.... ...+..+..|.+.|..++|++..++++++|++||.|.|||+++.+.-..+ ...+.++
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 9999999998751 23456777899999999999999999999999999999999875543333 3467788
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCC--CeEEEEEcCCCC-EEEEEeCC----eEEEEECCCCCCCce
Q 002519 765 RFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGE-LLASVSED----SVRVWTVGSGSEGEC 836 (913)
Q Consensus 765 ~~s~~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h~~--~V~sl~~spdg~-~l~s~s~d----~I~vwdl~~~~~~~~ 836 (913)
+|......+++.+. +|.+.|||++..+.+..+..+.. .+..|.|+|+.. .|+++++| .|.+||+|... ..
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP 245 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SP 245 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cc
Confidence 88887776666554 67999999999988888876655 477899999876 45555544 79999998653 56
Q ss_pred EEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCC-EEEEEeCCCcEEEe
Q 002519 837 VHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG-YVASASHDKFVKLW 912 (913)
Q Consensus 837 i~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~-~Lasgs~DG~I~IW 912 (913)
++++.+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+ .+.....++..+.|+|..- .|+.++.||.|.||
T Consensus 246 ~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 246 LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 67778999999999999977 88999999999999999999998 7777889999999999776 78888999999987
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=184.01 Aligned_cols=242 Identities=17% Similarity=0.238 Sum_probs=180.5
Q ss_pred eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC----ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 002519 668 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 743 (913)
Q Consensus 668 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~----~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I 743 (913)
+..+++|.+.|++++|+.||++|+|++.|++||||+++.-. ++++.-. .-+.-+.+.|.||-+.+++++-...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence 34578999999999999999999999999999999998521 1222211 122456799999999999999889999
Q ss_pred EEEEcCCCee---eEE--------e----eCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEE
Q 002519 744 RYWSINNGSC---TRV--------F----KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 808 (913)
Q Consensus 744 ~iwdl~~~~~---~~~--------~----~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~ 808 (913)
++|.+...+. ... | ...+..+-....+.++++++.|..|.+||++ |..+..+......-+..+.
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 9998754321 100 1 1122233444555678888889999999999 8888888776667778899
Q ss_pred cCCCCEEEEEeCC-eEEEEECCCC-----CCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-----
Q 002519 809 DPSGELLASVSED-SVRVWTVGSG-----SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK----- 877 (913)
Q Consensus 809 spdg~~l~s~s~d-~I~vwdl~~~-----~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~----- 877 (913)
+|+|++|++++-- .|+||.+--. .+...+..+++|...|..++|+++.+.+++.+.||+++|||++-.-
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999988 9999997432 2345667889999999999999999999999999999999985321
Q ss_pred --EE-----EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 878 --TM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 878 --~~-----~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
++ .+.+-.+.-..+..+|+|..||.+. ...|++|
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 11 1112233444899999999887654 3345554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=197.99 Aligned_cols=269 Identities=17% Similarity=0.281 Sum_probs=212.7
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 714 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~ 714 (913)
.|..++|-|||..|+.+. +..+.|||...|..+.++++|.+.|.|++|+.||+++++|+.|+.|.||.-.-.+ +..+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--ILKY 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--eeee
Confidence 799999999999888775 5579999999999999999999999999999999999999999999999876533 2222
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE-EeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 002519 715 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR 793 (913)
Q Consensus 715 ~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~-~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~ 793 (913)
.|.+.|.|+.|+|-.. .+++|+- ...-+|........+ .....+.+.+|..+|.+++.|-.+|+|.|-+....+.+
T Consensus 91 -SH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred -ccCCeeeEeecCchHH-Hhhhcch-hhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 5999999999999865 4547763 456788876544332 22335667889999999999999999999865433332
Q ss_pred EEe--cCCCCCeEEEEEcCCC-----CEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 002519 794 LSL--QGHTKPIDSVCWDPSG-----ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 865 (913)
Q Consensus 794 ~~l--~~h~~~V~sl~~spdg-----~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d 865 (913)
..- .+...+|.+|+|+|.. ..+++...+ ++.+|.+.. ..+..-..-+....|+.+.++|.++++|++|
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccCC
Confidence 222 2467889999999953 367777777 788887742 2333222334456788999999999999999
Q ss_pred CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 866 QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 866 g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+.+++|..+.-.+-++...+.+|+.++..|++.+++.|+.||+|-.|+
T Consensus 244 k~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 244 KQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 999999876655557778899999999999999999999999997664
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=193.81 Aligned_cols=281 Identities=17% Similarity=0.222 Sum_probs=209.5
Q ss_pred CCeEEeCCCcchhhhcccccccCCccCceeeecccC----CCCCCCCCCcccccccC-ccceeeeEeecCCCCEEEEEEe
Q 002519 568 SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD----DTDPRDAGGRGMDVSQG-FSFKEANSVRASTSKVICCHFS 642 (913)
Q Consensus 568 ~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d----~~~~~d~~~~~~~~~~~-~~~~~~~~l~~H~~~V~~l~fs 642 (913)
.++|||..+.+...+.-.... +.......|-... ....+|...+.|+.... ..+..+..+.+. .-.|++..
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~--~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~ 88 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTA--EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACA 88 (673)
T ss_pred ceEEeecccccCccccccCCC--CCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhh
Confidence 468899888766555433222 2223333332222 12233334444443332 122333333332 45566655
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccC-CCCe
Q 002519 643 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASV 721 (913)
Q Consensus 643 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h-~~~V 721 (913)
....|+++|+..++|+|||+....+.+.+++|...|+++.++..+.+||+++..|.|.|..+.+ +.....|... ...|
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFTIDSGQSV 167 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-CccccceecCCCCeE
Confidence 5568999999999999999998888899999999999999999999999999999999999998 4444555533 4556
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----eCCceEEEEecCCCEE-EEEEcCCeEEEEECCCCeEEEEe
Q 002519 722 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRY-LAAAAENVVSILDAETQACRLSL 796 (913)
Q Consensus 722 ~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~s~~~~~l-l~~~~dg~I~i~D~~t~~~~~~l 796 (913)
.-+.|++..+++|.+++++|.|.+||+.....+..+ ..+...|||+|....+ ++.+.|..|.+||++..+....+
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL 247 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence 689999999999999999999999999887666543 4566789999988654 55677999999999987766666
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC
Q 002519 797 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 797 ~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g 856 (913)
. ...+...++|.++|.+|++|... .|..||++.. ...+..+..|...|++++|-+.-
T Consensus 248 ~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~--k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 248 T-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST--KAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred e-ecCCcceeeecCCceEEEeecCCceEEEEecccC--CCCceEeeecccceeEEEeeecc
Confidence 5 46789999999999999999888 9999999865 36677778889999999998764
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=181.46 Aligned_cols=206 Identities=20% Similarity=0.333 Sum_probs=165.8
Q ss_pred ccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcCCCC------c-----ee---EEeccCCCCeEEEEEcCCCCeEEEE
Q 002519 672 EEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG------Y-----SL---RTFMGHSASVMSLDFHPNKDDLICS 736 (913)
Q Consensus 672 ~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~------~-----~~---~~~~~h~~~V~sl~fsp~~~~ll~s 736 (913)
..|.+.|.++...+ .|+++++|+.||.|.|||+.+.. . ++ ..-.+|.-.|.++.|.|-+..+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35778999999977 48899999999999999998632 0 10 1123688899999999988889989
Q ss_pred EeCCCcEEEEEcCCCeeeEEee--CCceEEEEecCC--CEE-EEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC
Q 002519 737 CDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHL--GRY-LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 811 (913)
Q Consensus 737 gs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~--~~l-l~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd 811 (913)
++.|.++++||.++......|+ +.+..-+++|-. ..+ +++..+-.|++.|+.+|.+.+++.+|...|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 9999999999999987766654 555666666654 234 44555679999999999999999999999999999998
Q ss_pred CC-EEEEEeCC-eEEEEECCCCC------------CCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002519 812 GE-LLASVSED-SVRVWTVGSGS------------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 877 (913)
Q Consensus 812 g~-~l~s~s~d-~I~vwdl~~~~------------~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~ 877 (913)
.+ .|++|+.| .|++||++... ....++.-..|.+.|..++|..++.++++++.|..+++|+...|+
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 88 67788888 99999998541 112222344567789999999999999999999999999998765
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=200.16 Aligned_cols=247 Identities=16% Similarity=0.261 Sum_probs=187.6
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeE--eccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEE
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWD 703 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~--l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwd 703 (913)
..+..|.+.|.++.|-|....|++++.|.++++||+++.+++.. +.+|...|.+++|.+++. .|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 45668999999999999767999999999999999999888777 899999999999999765 688999999999999
Q ss_pred cCCCCc--------------------------eeEEeccCCCCeEE---EEEcCCCCeEEEEEeC-CCcEEEEEcCCCee
Q 002519 704 ADNPGY--------------------------SLRTFMGHSASVMS---LDFHPNKDDLICSCDG-DGEIRYWSINNGSC 753 (913)
Q Consensus 704 l~~~~~--------------------------~~~~~~~h~~~V~s---l~fsp~~~~ll~sgs~-Dg~I~iwdl~~~~~ 753 (913)
++-.+. .++..+.+...|.+ +.+..|...| ++++. |+.|+|||++...+
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tl-aSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTL-ASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecccee-eeccCCCcceEEEeeccccc
Confidence 974220 01122234444554 5555565544 46665 99999999997654
Q ss_pred eEEe--------------eCCceEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEecCCCCC--eEEEEEcCCCCEE
Q 002519 754 TRVF--------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKP--IDSVCWDPSGELL 815 (913)
Q Consensus 754 ~~~~--------------~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~--~~~~~l~~h~~~--V~sl~~spdg~~l 815 (913)
.... ..+..++.....|.++++.+.|+.|++|++.+. .++..+.++... ...-+.+|++.+|
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 3321 123456677778899999999999999999875 344445544322 2233578999999
Q ss_pred EEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCC
Q 002519 816 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSEN 876 (913)
Q Consensus 816 ~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~I~iwd~~~~ 876 (913)
++|+.| ..++|.+.+.. .....+.+|...|++++|.|.. .-+++++.|..++||++..+
T Consensus 333 ~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999999 99999998654 3445567788899999998743 34777799999999999654
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=193.07 Aligned_cols=254 Identities=18% Similarity=0.240 Sum_probs=200.7
Q ss_pred EECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEEcCC---CCceeEEeccCCCCeEEEEEcCCCCeEE
Q 002519 660 WHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDADN---PGYSLRTFMGHSASVMSLDFHPNKDDLI 734 (913)
Q Consensus 660 wd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwdl~~---~~~~~~~~~~h~~~V~sl~fsp~~~~ll 734 (913)
+|+.+......++.+.+.|++++|+|..+ ++|+|..-|.|-+||+.+ ....+..+..|..+|.+|.|+|.+...|
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 44455566667778899999999999754 788888899999999952 2345677889999999999999888888
Q ss_pred EEEeCCCcEEEEEcCCCeeeEEeeC-----CceEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEecCCCCCeEEEEE
Q 002519 735 CSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCW 808 (913)
Q Consensus 735 ~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~-~~~l~~h~~~V~sl~~ 808 (913)
++.+.||+|++-|+++......+.. ....+.|+.+...++++..-|.+.+||.+++.. ...+.-|...|++|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 8999999999999998754333322 234456777778888888888999999999855 6667779999999999
Q ss_pred cCCCC-EEEEEeCC-eEEEEECCCCCCCc-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC----CCcEEEE
Q 002519 809 DPSGE-LLASVSED-SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS----ENKTMTL 881 (913)
Q Consensus 809 spdg~-~l~s~s~d-~I~vwdl~~~~~~~-~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~----~~~~~~~ 881 (913)
+|-.. +|++++.| +++|||++.-.... .+.....|...|.++.|+|.+..|++.+.|..|+|||.. .......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 99766 88999999 99999998764433 345555678899999999999889999999999999984 2222233
Q ss_pred cccC----C--CeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 882 TAHE----G--LIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 882 ~~h~----~--~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
..|. . ......|.|+..+|++|..-..|-|||
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 3332 2 234568999999999999888888875
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-19 Score=181.22 Aligned_cols=268 Identities=18% Similarity=0.272 Sum_probs=205.1
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCC-----C-------ceeeEec-cCCCCeEEEEEC-------CCCCEEEEE
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTDT-----L-------KSKTNLE-EHSSLITDVRFS-------PSMPRLATS 693 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-----~-------~~~~~l~-~h~~~V~~l~fs-------pdg~~Lasg 693 (913)
.-...+.|+|||..|++-+.|..+.+|++.. . +...+++ .....|...+|- |+..++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 3456789999999999999999999998752 1 1111122 134568888885 577799999
Q ss_pred eCCCeEEEEEcCCCCceeEEecc--CCC---CeEEEEEcCCCCeEEEEEeCCCcEEEEEc-CCCeeeEEe----------
Q 002519 694 SFDKTVRVWDADNPGYSLRTFMG--HSA---SVMSLDFHPNKDDLICSCDGDGEIRYWSI-NNGSCTRVF---------- 757 (913)
Q Consensus 694 s~Dg~V~Iwdl~~~~~~~~~~~~--h~~---~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl-~~~~~~~~~---------- 757 (913)
+.|.-|.+||.-+ ++....+.+ |-+ ...+++|+|||..|+ ++...+|++||+ +.|.....+
T Consensus 130 sr~~PIh~wdaft-G~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 130 SRDQPIHLWDAFT-GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred cccCceeeeeccc-cccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 9999999999988 555544442 333 345799999999776 566899999999 555432221
Q ss_pred eCCceEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCC
Q 002519 758 KGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEG 834 (913)
Q Consensus 758 ~~~~~~v~~s~~~~-~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~~ 834 (913)
.+-+.+++|+|... .+++++....+-||.-....++..+.+|.+.|+.++|.++|+.|++|... .|.+||++...
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~-- 284 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR-- 284 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--
Confidence 23456788999876 56666778899999988899999999999999999999999999999865 99999998653
Q ss_pred ceEEEeecCCC---ceEEEEEeCCCCEEEEEEcCCeEEEEECCC-Cc-EEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 835 ECVHELSCNGN---KFHSCVFHPTYPSLLVIGCYQSLELWNMSE-NK-TMTLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 835 ~~i~~~~~~~~---~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~-~~-~~~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
..+..+..|.. .-.-+...|++++|++|+.||.|++||++. +. +..+..++..|+.++++|--.++|+++..
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 33333433332 333456678999999999999999999987 55 44777899999999999998888887643
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.2e-17 Score=183.38 Aligned_cols=293 Identities=30% Similarity=0.495 Sum_probs=231.8
Q ss_pred CCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC-
Q 002519 611 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP- 688 (913)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~- 688 (913)
....|+... .......+..|...|.+++|++++.++++++. |+.+++|++..++.+..+.+|...|.+++|+|++.
T Consensus 135 ~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 135 TVKLWDLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred cEEEEEecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce
Confidence 444444433 25788889999999999999999999998885 99999999999899999999999999999999998
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeE-EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-eEEe---eCCceE
Q 002519 689 RLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF---KGGTAQ 763 (913)
Q Consensus 689 ~Lasgs~Dg~V~Iwdl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~---~~~~~~ 763 (913)
.+++++.|+.|++||... +..+. .+.+|...+ ...|++++ .++++++.|+.+++|+++.... ...+ ...+..
T Consensus 213 ~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 289 (466)
T COG2319 213 LIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289 (466)
T ss_pred EEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEE
Confidence 555558999999998885 55566 688888876 44899998 4555999999999999987664 4444 245667
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcCCCCEEEEE-eCC-eEEEEECCCCCCCceEEE
Q 002519 764 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECVHE 839 (913)
Q Consensus 764 v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--~h~~~V~sl~~spdg~~l~s~-s~d-~I~vwdl~~~~~~~~i~~ 839 (913)
+.|.|++..+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ ..| .+.+|++.... ....
T Consensus 290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~ 366 (466)
T COG2319 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLKT 366 (466)
T ss_pred EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---eeEE
Confidence 7899988888888888889999999887776665 788889999994332555555 566 88889998764 2222
Q ss_pred eecCCCceEEEEEeCCCCEEEE-EEcCCeEEEEECCCCcEEEEcccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 840 LSCNGNKFHSCVFHPTYPSLLV-IGCYQSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 840 ~~~~~~~i~~l~~sp~g~~l~s-~s~dg~I~iwd~~~~~~~~~~~h~-~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
... ...+..+.+.+ ...++. +..++.+.+|+............. ..+..+.+++++..+++++.++.+++|+
T Consensus 367 ~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 367 LEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred ecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 222 22278888888 543444 578899999999998888555555 8999999999999999999999999995
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-20 Score=209.11 Aligned_cols=216 Identities=20% Similarity=0.373 Sum_probs=182.6
Q ss_pred CCCCcccccccCccceeeeEeecCCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC-
Q 002519 609 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS- 686 (913)
Q Consensus 609 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspd- 686 (913)
.+.+.+|++.+...-+.+..|..|+..|++++|++. ..+|++|+.||+|++||+...+.+.++.+....|.+|.|+|.
T Consensus 109 nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~ 188 (839)
T KOG0269|consen 109 NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY 188 (839)
T ss_pred CCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC
Confidence 445677888776667778899999999999999984 468999999999999999999999999999999999999985
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE--Eee--CCce
Q 002519 687 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFK--GGTA 762 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~--~~~--~~~~ 762 (913)
+.+|+++.+.|.+.+||++-+..+...+..|.++|.|+.|+|+ +.+||+|+.|+.|+|||+.+.+... ++. ..+.
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~ 267 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVG 267 (839)
T ss_pred CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCCCccEEEEeccCCCccceeEEeecceee
Confidence 6689999999999999999988899999999999999999995 5688899999999999998765433 222 3567
Q ss_pred EEEEecCCCEEEEEEc---CCeEEEEECCCC-eEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEE
Q 002519 763 QMRFQPHLGRYLAAAA---ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRV 825 (913)
Q Consensus 763 ~v~~s~~~~~ll~~~~---dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~sp-dg~~l~s~s~d-~I~v 825 (913)
.++|-|...+.++.+. |-.|+|||++.. -+..++..|+..++.++|.. |...|.+++.| +|..
T Consensus 268 rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 268 RVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred eeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 8999999887776665 779999999887 56778889999999999976 33467777777 4433
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.2e-19 Score=193.18 Aligned_cols=136 Identities=22% Similarity=0.392 Sum_probs=109.3
Q ss_pred cCCeEEEEECCCCeEE--EEec--CCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCC----CceEEEeecCCCce
Q 002519 778 AENVVSILDAETQACR--LSLQ--GHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSE----GECVHELSCNGNKF 847 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~--~~l~--~h~~~V~sl~~sp-dg~~l~s~s~d-~I~vwdl~~~~~----~~~i~~~~~~~~~i 847 (913)
..|.|.||+++..-.+ ..+. .....|+.+.|+| |...|+++++| .|++|.+..+.. ......+..|..+|
T Consensus 601 ~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI 680 (1012)
T KOG1445|consen 601 SGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKI 680 (1012)
T ss_pred CCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceE
Confidence 3566777776653111 0111 1345689999999 56689999999 999999976532 34557788899999
Q ss_pred EEEEEeCC-CCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 848 HSCVFHPT-YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 848 ~~l~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+++.|||- .+.|++++.|-+|+|||+.+.+.. .+.+|.+.|.+++|+|||+.+|+.+.||+|+||+
T Consensus 681 ~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 681 TSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred EEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 99999994 467888999999999999998877 8999999999999999999999999999999985
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-19 Score=195.07 Aligned_cols=242 Identities=19% Similarity=0.267 Sum_probs=198.3
Q ss_pred ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEE
Q 002519 666 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 745 (913)
Q Consensus 666 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~i 745 (913)
.+-..+++|++.|.||...|.|.+|++|+.||+||||.+.+ +.+++++. ..+.|.||+|+|.+..-+++...+.++.|
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEE
Confidence 34456789999999999999999999999999999999998 78888776 56789999999987765555555555666
Q ss_pred EEcCCCe---------------------------------------ee-EEeeCCceEEEEecCCCEEEEEEcC---CeE
Q 002519 746 WSINNGS---------------------------------------CT-RVFKGGTAQMRFQPHLGRYLAAAAE---NVV 782 (913)
Q Consensus 746 wdl~~~~---------------------------------------~~-~~~~~~~~~v~~s~~~~~ll~~~~d---g~I 782 (913)
.+..-|. |+ -.....+..+.|+..|.+|++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 5543221 00 0112245568899999999988775 478
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEE
Q 002519 783 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 862 (913)
Q Consensus 783 ~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~ 862 (913)
.|+++...+...-|....+.|.++.|+|...+|++++...|+|||+... ..++.+......|..+++||.|..|+++
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence 9999988776666666677899999999999999999999999999764 5666666667889999999999999999
Q ss_pred EcCCeEEEEECCCCcE--EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 863 GCYQSLELWNMSENKT--MTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 863 s~dg~I~iwd~~~~~~--~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
+.|+.+..||+.-... .++.-|...|++|+|++.-.++++|++||.+.||
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 9999999999876643 3788999999999999999999999999999987
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-19 Score=186.96 Aligned_cols=247 Identities=16% Similarity=0.222 Sum_probs=201.1
Q ss_pred eeeEeecCCCCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceee--EeccCC-CCeEEEEECCCCCEEEEEeCCCeEE
Q 002519 625 EANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKT--NLEEHS-SLITDVRFSPSMPRLATSSFDKTVR 700 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~--~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~ 700 (913)
.+..+.-...+|.+++|.|+|. .+++++.....++||+.+.+... ...++. ..+.....++++++|+..+..|.|.
T Consensus 249 ~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~ 328 (514)
T KOG2055|consen 249 KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIH 328 (514)
T ss_pred hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEE
Confidence 4555666678999999999999 99999999999999998766443 333443 4577888899999999999999999
Q ss_pred EEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC----CceEEEEecCCCEEEEE
Q 002519 701 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAA 776 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~s~~~~~ll~~ 776 (913)
|....+ +..+.+++ -.+.|.+++|+.+++.++ +++.+|.|.+||++...|++.+.. +.+.+|.+.++.++++|
T Consensus 329 lLhakT-~eli~s~K-ieG~v~~~~fsSdsk~l~-~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~G 405 (514)
T KOG2055|consen 329 LLHAKT-KELITSFK-IEGVVSDFTFSSDSKELL-ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATG 405 (514)
T ss_pred eehhhh-hhhhheee-eccEEeeEEEecCCcEEE-EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEec
Confidence 999887 66666665 567899999999998776 556689999999999999998864 45678889999999999
Q ss_pred EcCCeEEEEECCC------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCCceEEEeecCCCce
Q 002519 777 AAENVVSILDAET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGNKF 847 (913)
Q Consensus 777 ~~dg~I~i~D~~t------~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d---~I~vwdl~~~~~~~~i~~~~~~~~~i 847 (913)
+..|.|.|||..+ .+++..+..-...|+++.|++|..+|+.++.. .+++..+.+.............-+.+
T Consensus 406 S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~v 485 (514)
T KOG2055|consen 406 SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHV 485 (514)
T ss_pred cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccce
Confidence 9999999999654 46777777777889999999999999998865 78988886552222222222334568
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002519 848 HSCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 848 ~~l~~sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
+|++|+|.+.++++|...|.|.+|.+.
T Consensus 486 tc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 486 TCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEEecCCCceEEeecCCCceeeEeec
Confidence 999999999999999999999999874
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.8e-20 Score=181.95 Aligned_cols=280 Identities=18% Similarity=0.209 Sum_probs=203.1
Q ss_pred eeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
+...+++|.+.|+|+.|-.+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+...|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4567889999999999988874 8899999999999999999998888 67888999998887 5788999999999999
Q ss_pred cCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCC-cEEEEEcC-----------CCeeeEEee-------CCceEE
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-EIRYWSIN-----------NGSCTRVFK-------GGTAQM 764 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg-~I~iwdl~-----------~~~~~~~~~-------~~~~~v 764 (913)
+.. ... ...|.-.++++.|++.. +...+... ....|+-+ ....+...+ +.+.+.
T Consensus 84 ia~-s~~---i~i~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 84 IAY-SAF---ISIHSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred ccC-cce---EEEeeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence 985 222 22344556666666431 11111111 11111111 111111111 112222
Q ss_pred EEecC-CC--EEEEEEcCCeEEEEECCCC----------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 002519 765 RFQPH-LG--RYLAAAAENVVSILDAETQ----------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS 830 (913)
Q Consensus 765 ~~s~~-~~--~ll~~~~dg~I~i~D~~t~----------~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~ 830 (913)
.+... +. .+++|..+|.|.+||+.++ +.+.....|..+|.++.|.+....=++++.+ .+..|.+..
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 22222 12 3455666899999999997 3344455688999999999866666677777 888998864
Q ss_pred C-CCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCc
Q 002519 831 G-SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKF 908 (913)
Q Consensus 831 ~-~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~ 908 (913)
. .......++......+..+.+-||++.+++++.|+.|+||..++...+ .+.-|.+.|++++|+|+..++|+++.|+.
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 4 222233344444567888999999999999999999999999999988 77889999999999999999999999999
Q ss_pred EEEeC
Q 002519 909 VKLWK 913 (913)
Q Consensus 909 I~IWd 913 (913)
|.+||
T Consensus 317 ISLWk 321 (323)
T KOG0322|consen 317 ISLWK 321 (323)
T ss_pred EEeee
Confidence 99997
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=183.42 Aligned_cols=295 Identities=20% Similarity=0.285 Sum_probs=206.8
Q ss_pred ccccCCccCceeeecccCCCCCCCCCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECC--
Q 002519 586 LVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-- 663 (913)
Q Consensus 586 ~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-- 663 (913)
.+++++.|.+|..|.-..+..... ...++....+..|...|++|.|+|+|.+||+|+.+|.|.+|...
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~----------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGG----------DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred ceecccCccceeeeeeeecCCCCC----------ceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 445666666666664332211110 03567788899999999999999999999999999999999755
Q ss_pred ------C--------CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCC
Q 002519 664 ------T--------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 729 (913)
Q Consensus 664 ------~--------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~ 729 (913)
+ ....+.+.+|...|..++|++++.++++++.|..+++||+.. +.....+.+|...|..++|.|.
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILDDHEHYVQGVAWDPL 176 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeeccccccccceeecchh
Confidence 2 445677889999999999999999999999999999999998 7888999999999999999998
Q ss_pred CCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceE-EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEE
Q 002519 730 KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 808 (913)
Q Consensus 730 ~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~-v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~ 808 (913)
+.+ +++-+.|...+.+.+.....+......+.. ..+.. ......++|.-++.+ .-.+.++|
T Consensus 177 ~qy-v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~--------~e~~s~rLfhDeTlk---------sFFrRlsf 238 (434)
T KOG1009|consen 177 NQY-VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE--------REGKSTRLFHDETLK---------SFFRRLSF 238 (434)
T ss_pred hhh-hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC--------CCcceeeeeecCchh---------hhhhhccc
Confidence 764 558888887888777655544333210000 00000 011233344333322 23456788
Q ss_pred cCCCCEEEEEeCC----------eEEEEECCCCCCCceEEEeecCCCceEEEEEeC-----------------CCCEEEE
Q 002519 809 DPSGELLASVSED----------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-----------------TYPSLLV 861 (913)
Q Consensus 809 spdg~~l~s~s~d----------~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp-----------------~g~~l~s 861 (913)
+|+|.+|++...- ..++|+-. .....+..+.+.......+.|+| -++.+++
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk--~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRK--DLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccc--cccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 9999888765421 23445433 22234444444444444444443 2345667
Q ss_pred EEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 862 IGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 862 ~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
....+.|+|||..+...+ .-.-|-..|++++|++||.+|+..+.||...+
T Consensus 317 iAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 317 IATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 777789999999998776 34468999999999999999999999997653
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-17 Score=182.30 Aligned_cols=282 Identities=30% Similarity=0.535 Sum_probs=228.0
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eeeEeccCCC-CeEEEEE-CCCCC-EEEEEeC-CCeEEEE
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSS-LITDVRF-SPSMP-RLATSSF-DKTVRVW 702 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-~~~~l~~h~~-~V~~l~f-spdg~-~Lasgs~-Dg~V~Iw 702 (913)
.+..|...|.++.|.+.+..++.++.|+.|.+|+..... .+..+..+.. .+..+.+ ++++. +++..+. |+.+++|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999999876 6777776443 7888887 88887 5555455 9999999
Q ss_pred EcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEEEE-E
Q 002519 703 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA-A 777 (913)
Q Consensus 703 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~-Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll~~-~ 777 (913)
++.........+..|...|.+++|+|++.. +++++. |+.+++|++..+..+..+.+ .+..+.|.+++..++++ +
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKL-LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCE-EEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 998645677888899999999999999884 446664 99999999998777777765 56778899888745555 7
Q ss_pred cCCeEEEEECCCCeEEE-EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCC
Q 002519 778 AENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 855 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~-~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~ 855 (913)
.|+.|++||...+..+. .+.+|...+ ...|++++.++++++.+ .+++|+++.... .+..+..|...+.++.|.|+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~ 295 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPD 295 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecCCccEEEEEECCC
Confidence 89999999999888877 688888875 44899999888888888 999999987644 23333566889999999998
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-EE--cccCCCeEEEEEeCCCCEEEEE-eCCCcEEEeC
Q 002519 856 YPSLLVIGCYQSLELWNMSENKTM-TL--TAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 913 (913)
Q Consensus 856 g~~l~s~s~dg~I~iwd~~~~~~~-~~--~~h~~~V~~l~~spdg~~Lasg-s~DG~I~IWd 913 (913)
+..+++++.|+.+.+||+...... .. ..|...|..+.|.+++..++.+ ..|+.+++|+
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 888888999989999999888766 33 3688889999994332455555 6788898885
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=176.40 Aligned_cols=273 Identities=15% Similarity=0.220 Sum_probs=200.7
Q ss_pred cceEEEEcCCCcccc---CCCCeEEeCCCcchhhhcccccccCCccCceeeecccCCCCCCCCCCcccccccCccceeee
Q 002519 551 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 627 (913)
Q Consensus 551 ~~~~~~s~dg~~~~~---~~~~~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~ 627 (913)
...+.|++.|.+++. ++.+-|||..|- ...+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~----------------------------------------------~iar 59 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF----------------------------------------------RIAR 59 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc----------------------------------------------chhh
Confidence 357889999988766 445567776542 2334
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEEcCC
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADN 706 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~Iwdl~~ 706 (913)
.+.+|..+|+|++||+||+.|+|++.|..|.+||+..|.+++.++ ...+|+.+.|+|..... +++-.+..-.+.++..
T Consensus 60 ~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 60 MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 577899999999999999999999999999999999999888886 56789999999965433 3333344455566654
Q ss_pred CCceeEEecc---CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC----CceEEEEecCCCEEEEEEcC
Q 002519 707 PGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 707 ~~~~~~~~~~---h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~s~~~~~ll~~~~d 779 (913)
+...+..... .+..-.+..|.+.|+++ ++|...|.+.++|..+.+|+..++. .+..+.++-.+..++.-+.|
T Consensus 139 ~~h~~Lp~d~d~dln~sas~~~fdr~g~yI-itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD 217 (405)
T KOG1273|consen 139 PKHSVLPKDDDGDLNSSASHGVFDRRGKYI-ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD 217 (405)
T ss_pred CceeeccCCCccccccccccccccCCCCEE-EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC
Confidence 2211111110 11112223577777755 4999999999999999999988864 34668899999999999999
Q ss_pred CeEEEEECCCC-------e--EEEEecC--CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCCceEEEeecCC-C
Q 002519 780 NVVSILDAETQ-------A--CRLSLQG--HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNG-N 845 (913)
Q Consensus 780 g~I~i~D~~t~-------~--~~~~l~~--h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~~~~i~~~~~~~-~ 845 (913)
..|+.|+++.- + +.+.+.. ....-.+++|+.+|.|++.++.. .++||.-..| ..++.+.+.. .
T Consensus 218 RvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILhG~kgE 294 (405)
T KOG1273|consen 218 RVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILHGTKGE 294 (405)
T ss_pred ceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc---ceeeeecCCchh
Confidence 99999988632 1 1111111 12345688999999999999877 8999999877 6677777666 5
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002519 846 KFHSCVFHPTYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 846 ~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 875 (913)
....+.|+|-...|++. ..|.|+||....
T Consensus 295 ~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 295 ELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred heeecccccceeeeeec-cCCceEEEEeec
Confidence 67789999998877776 778999998643
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-19 Score=197.03 Aligned_cols=252 Identities=21% Similarity=0.331 Sum_probs=195.9
Q ss_pred ceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECC--------CCceeeEeccCCCCeEEEEECCCCCEEEEEe
Q 002519 623 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------TLKSKTNLEEHSSLITDVRFSPSMPRLATSS 694 (913)
Q Consensus 623 ~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~--------~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs 694 (913)
+....+++.|.+.|++++|.+....|++++.||+|++|++. ..+.+.+|++|.++|.|+++.+++..+++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 44455899999999999999999999999999999999993 3467889999999999999999999999999
Q ss_pred CCCeEEEEEcCCC---------CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---Cc-
Q 002519 695 FDKTVRVWDADNP---------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GT- 761 (913)
Q Consensus 695 ~Dg~V~Iwdl~~~---------~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~- 761 (913)
.||+|+.|++... ......+.||.+.|+.++++....+|+ +|+.||+|++|+...... .+|.. +.
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll-scs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL-SCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee-eecCCceEEeeccCCcCc-cccCCccccCC
Confidence 9999999966421 234567789999999999999877655 999999999999887665 33322 11
Q ss_pred -eEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecCC-------CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002519 762 -AQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGH-------TKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 831 (913)
Q Consensus 762 -~~v~~s~~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h-------~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~ 831 (913)
..+.+.... ...++...-+.-.++|.+....+..+... ...+.-+.++|...+.+++.+| .|+++|..++
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 223332222 12222222333334444444333333321 1347788999999999999999 9999999887
Q ss_pred CCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002519 832 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 832 ~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 879 (913)
..++....|...++++++.|+|.+|++++.|+.|++|.+....++
T Consensus 522 ---~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 522 ---KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ---ccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 788888889999999999999999999999999999999877665
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-18 Score=181.24 Aligned_cols=233 Identities=15% Similarity=0.345 Sum_probs=179.9
Q ss_pred EEEEECC-------CCCEEEEEeCCCeEEEEEcCCCC--ceeE------------------EeccCCCCeEEEEEcCCCC
Q 002519 679 TDVRFSP-------SMPRLATSSFDKTVRVWDADNPG--YSLR------------------TFMGHSASVMSLDFHPNKD 731 (913)
Q Consensus 679 ~~l~fsp-------dg~~Lasgs~Dg~V~Iwdl~~~~--~~~~------------------~~~~h~~~V~sl~fsp~~~ 731 (913)
.|+.|.. .|+++|.|+.|..|.|||++--. .+.. ...+|++.|.++.|+..-+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5666643 36799999999999999986311 1111 1226899999999999999
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeeEEee---CCceEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEE
Q 002519 732 DLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVC 807 (913)
Q Consensus 732 ~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~s~~~~-~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~ 807 (913)
++|++|+.|.+|++||+.++++..++. ..+.++.|++... .+++|+.|++|.++|.|........-...+.|..++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 999999999999999999999988876 4577899999875 566777899999999995322222222457799999
Q ss_pred EcCCCC-EEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCcEEEEccc
Q 002519 808 WDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENKTMTLTAH 884 (913)
Q Consensus 808 ~spdg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~-~l~s~s~dg~I~iwd~~~~~~~~~~~h 884 (913)
|.+... .++++.+| +|+-+|+|... +++..+..|...|.+++++..-. ++++++.|+.|++|++..........|
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~ 414 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH 414 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc
Confidence 999766 55566666 99999999764 89999999999999999988654 577888999999999876655433333
Q ss_pred C---CCeEEEEEeCCCC-EEEEEeCCCcEEEeC
Q 002519 885 E---GLIAALAVSTETG-YVASASHDKFVKLWK 913 (913)
Q Consensus 885 ~---~~V~~l~~spdg~-~Lasgs~DG~I~IWd 913 (913)
. +...|+++.|+-. +++.|+..+.++|||
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEee
Confidence 3 3466777777655 577788888899997
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.5e-18 Score=187.66 Aligned_cols=288 Identities=19% Similarity=0.296 Sum_probs=204.4
Q ss_pred ceeeeEeecCCCCEEEEEEecCCC---EEEEEeCCCcEEEEECCC--CceeeEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002519 623 FKEANSVRASTSKVICCHFSSDGK---LLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 697 (913)
Q Consensus 623 ~~~~~~l~~H~~~V~~l~fspdg~---~Lasgs~Dg~V~vwd~~~--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 697 (913)
.-....+.+|..+|+|+.|-|+.. ++++|+.|+.|++|.++. ...+..+.+|...+.|+ +.....+.+.+.|+
T Consensus 44 ~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad~ 121 (764)
T KOG1063|consen 44 ILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCV--VARSSVMTCKAADG 121 (764)
T ss_pred ceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEE--EeeeeEEEeeccCc
Confidence 346678899999999999999887 899999999999999983 34556677766555554 33322333336899
Q ss_pred eEEEEEcCCCC-ceeEEec--cCCCCeEEEEEcC-CCCeEEEEEeCCCcEEEEEcCCCee--eEEeeCCc---eEEEEec
Q 002519 698 TVRVWDADNPG-YSLRTFM--GHSASVMSLDFHP-NKDDLICSCDGDGEIRYWSINNGSC--TRVFKGGT---AQMRFQP 768 (913)
Q Consensus 698 ~V~Iwdl~~~~-~~~~~~~--~h~~~V~sl~fsp-~~~~ll~sgs~Dg~I~iwdl~~~~~--~~~~~~~~---~~v~~s~ 768 (913)
+|++||..... .+...+. .....-.|+++.+ .+..+++.|+.+..|.++.-...++ +..++++. ..++|..
T Consensus 122 ~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~ 201 (764)
T KOG1063|consen 122 TVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFAR 201 (764)
T ss_pred eEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhc
Confidence 99999995422 1222222 1122234556666 4455666777788888887665543 34455553 4566665
Q ss_pred CCC---EEEEEEcCCeEEEEECCCCe---------------------EEEE----------ecCCCCCeEEEEEcCCCCE
Q 002519 769 HLG---RYLAAAAENVVSILDAETQA---------------------CRLS----------LQGHTKPIDSVCWDPSGEL 814 (913)
Q Consensus 769 ~~~---~ll~~~~dg~I~i~D~~t~~---------------------~~~~----------l~~h~~~V~sl~~spdg~~ 814 (913)
.++ .+++++.|..|+||.+.-+. ...+ +.+|+++|+++.|+|.+..
T Consensus 202 ~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~ 281 (764)
T KOG1063|consen 202 LGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLD 281 (764)
T ss_pred cCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhh
Confidence 544 34445559999999653221 1111 2389999999999999999
Q ss_pred EEEEeCC-eEEEEECCCCCC----CceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE----EEEcccC
Q 002519 815 LASVSED-SVRVWTVGSGSE----GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT----MTLTAHE 885 (913)
Q Consensus 815 l~s~s~d-~I~vwdl~~~~~----~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~----~~~~~h~ 885 (913)
|++++.| ++.+|.-.+..- ..++.+..+....+..+.|+|++..|++-+..|..++|....... ..+.+|.
T Consensus 282 LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~ 361 (764)
T KOG1063|consen 282 LLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV 361 (764)
T ss_pred heecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccc
Confidence 9999999 999998754311 122333334455689999999999999999999999999443221 2667999
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 886 GLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 886 ~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
+.|.+++|+|.|++|+++|.|-+-|||
T Consensus 362 ~~V~dv~W~psGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 362 DGVKDVDWDPSGEFLLSVSLDQTTRLF 388 (764)
T ss_pred ccceeeeecCCCCEEEEeccccceeee
Confidence 999999999999999999999998886
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.2e-20 Score=205.78 Aligned_cols=275 Identities=21% Similarity=0.373 Sum_probs=215.6
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
..+.++.+.+|.+.|+|+.|...|.++++|+.|..|+||..+++.+...+.||++.|++++.+.+..+++++|.|..|++
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-----ee--CCceEEEEecCCCEEE
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-----FK--GGTAQMRFQPHLGRYL 774 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~-----~~--~~~~~v~~s~~~~~ll 774 (913)
|.+.. +.++..+.+|.+.|++|+|+|-- +.+.||++++||.+-.-.+.. +. .-+..+.|...+..++
T Consensus 259 Wrl~~-~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 259 WRLPD-GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL 332 (1113)
T ss_pred EecCC-CchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence 99998 88899999999999999999863 778899999999882111111 11 1223445566667788
Q ss_pred EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEE
Q 002519 775 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 852 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg-~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~ 852 (913)
+++.|+.-..|...... .+...+.-+.++.+- .+.++.-.+ .+++|++.++ ...+.+.+|...+..+.+
T Consensus 333 Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~ 403 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDV 403 (1113)
T ss_pred cccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeee
Confidence 88888877777654321 122222222233222 355556666 8999999877 667777888999999999
Q ss_pred eCCCCEE-EEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 853 HPTYPSL-LVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 853 sp~g~~l-~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
||-...+ ..++.||.+.|||+-.+..+ ...+ .+.+...+|++||..++...+-|.++|.
T Consensus 404 Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 404 HPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred cCCCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence 9977654 56788999999999988776 3334 5567778999999988877777777764
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=179.75 Aligned_cols=205 Identities=26% Similarity=0.422 Sum_probs=164.9
Q ss_pred ccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEEcCC---------------CCceeEEeccCCCCeEEEEEcCCCCeEE
Q 002519 672 EEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDADN---------------PGYSLRTFMGHSASVMSLDFHPNKDDLI 734 (913)
Q Consensus 672 ~~h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwdl~~---------------~~~~~~~~~~h~~~V~sl~fsp~~~~ll 734 (913)
..|.+.|..++-++-++ +.++-+..|.|.||++.. ..+++.++.+|...-+.|+|+|-....+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 35777788887776544 556667799999999862 2346778889999999999999655445
Q ss_pred EEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC-
Q 002519 735 CSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE- 813 (913)
Q Consensus 735 ~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~- 813 (913)
++|.--+.|++|...++..... ...|.+|+..|..++|+|..+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd------------------------------------~~Pf~gH~~SVEDLqWSptE~~ 271 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVD------------------------------------QRPFTGHTKSVEDLQWSPTEDG 271 (440)
T ss_pred ccCccccceEeeeeccCceeec------------------------------------CccccccccchhhhccCCccCc
Confidence 5887778888888766432110 113456999999999999766
Q ss_pred EEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----EEcccCCCe
Q 002519 814 LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----TLTAHEGLI 888 (913)
Q Consensus 814 ~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~----~~~~h~~~V 888 (913)
+|++|+.| +|+|||+|.+....++.. +.|...|+.+.|+....+|++|+.||+++|||++..+.- .+..|..+|
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI 350 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI 350 (440)
T ss_pred eEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence 89999999 999999999877677766 888999999999999999999999999999999865433 888999999
Q ss_pred EEEEEeCCC-CEEEEEeCCCcEEEeC
Q 002519 889 AALAVSTET-GYVASASHDKFVKLWK 913 (913)
Q Consensus 889 ~~l~~spdg-~~Lasgs~DG~I~IWd 913 (913)
++|.|+|.. ..|++++.|..|.|||
T Consensus 351 tsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 351 TSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred eEEEeccccCceEEeccCCCcEEEEE
Confidence 999999854 5788888999999997
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-19 Score=190.21 Aligned_cols=291 Identities=19% Similarity=0.302 Sum_probs=226.8
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECCC--CCEEEEEeCCCe
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPS--MPRLATSSFDKT 698 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~V~~l~fspd--g~~Lasgs~Dg~ 698 (913)
.+.....|..|.+.|..|.|+..|..|++|+.|..|.+||+..+..+..+. +|...|.--.|-|. ...|++++.||.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 355667889999999999999999999999999999999999888777765 79999998899874 568999999999
Q ss_pred EEEEEcCCCCce--eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---------CCceEEEEe
Q 002519 699 VRVWDADNPGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTAQMRFQ 767 (913)
Q Consensus 699 V~Iwdl~~~~~~--~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---------~~~~~v~~s 767 (913)
|++=.+...+.+ ...+..|.+.|..++.-|+..+-|.+|+.|+.|.-+|++.......+. .....++..
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 999888764543 355667999999999999999999999999999999998875433321 134567788
Q ss_pred cCCC-EEEEEEcCCeEEEEECCCCeE------EEEec------CCCCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCC
Q 002519 768 PHLG-RYLAAAAENVVSILDAETQAC------RLSLQ------GHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSE 833 (913)
Q Consensus 768 ~~~~-~ll~~~~dg~I~i~D~~t~~~------~~~l~------~h~~~V~sl~~spdg~-~l~s~s~d~I~vwdl~~~~~ 833 (913)
|... .+++++.|..+++||.+.-.. +..+. .....|++++|+.++. +|++..+..|++|.-..+.-
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 8775 677788899999999876321 12222 1234599999997665 55555555899995433211
Q ss_pred --C-------ceEE-EeecCCCc--eEEEE-EeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 002519 834 --G-------ECVH-ELSCNGNK--FHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 899 (913)
Q Consensus 834 --~-------~~i~-~~~~~~~~--i~~l~-~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~ 899 (913)
. ..++ .+++|.+. |..+- |-|...|+++|+.-|.|.||+-++++++ .+.+....|+||.-+|--.+
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv 450 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV 450 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence 0 1222 26666543 44554 6788899999999999999999999988 45555559999999999999
Q ss_pred EEEEeCCCcEEEe
Q 002519 900 VASASHDKFVKLW 912 (913)
Q Consensus 900 Lasgs~DG~I~IW 912 (913)
||++|-|..|+||
T Consensus 451 LAsSGid~DVKIW 463 (559)
T KOG1334|consen 451 LASSGIDHDVKIW 463 (559)
T ss_pred hhccCCccceeee
Confidence 9999999999999
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-18 Score=175.34 Aligned_cols=267 Identities=17% Similarity=0.297 Sum_probs=188.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEEcCCCCce-eEEeccCC-CCe
Q 002519 646 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDADNPGYS-LRTFMGHS-ASV 721 (913)
Q Consensus 646 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~Iwdl~~~~~~-~~~~~~h~-~~V 721 (913)
..+|++...|.|+|||..++..+..|+++...+..++|.. ....+.+|+.||+|++||++...+. ...+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5789999999999999999999999999999999999977 3568999999999999999975443 34445555 455
Q ss_pred EEEEEcCCCCeEEEEEe----CCCcEEEEEcCCCee-eEE----eeCCceEEEEecCCC-EEEEEEcCCeEEEEECCCCe
Q 002519 722 MSLDFHPNKDDLICSCD----GDGEIRYWSINNGSC-TRV----FKGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQA 791 (913)
Q Consensus 722 ~sl~fsp~~~~ll~sgs----~Dg~I~iwdl~~~~~-~~~----~~~~~~~v~~s~~~~-~ll~~~~dg~I~i~D~~t~~ 791 (913)
.|++.... ++++++|. .|-.|.+||++.... ++. +...++.++|+|.+. .+++|+.||.|.|||++...
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 55655433 45776664 367899999998765 443 345789999999884 56677779999999998652
Q ss_pred ---EEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCCceEEEe--e-------cCCCceEEEEEeCCCC
Q 002519 792 ---CRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHEL--S-------CNGNKFHSCVFHPTYP 857 (913)
Q Consensus 792 ---~~~~l~~h~~~V~sl~~spdg-~~l~s~s~d-~I~vwdl~~~~~~~~i~~~--~-------~~~~~i~~l~~sp~g~ 857 (913)
.+...-.|...|.++.|..++ +.|.+-+.. ++.+|+++.+.....+..- . .....+..+....+..
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 222333477789999999887 245555555 9999999877422111100 0 0011122222233445
Q ss_pred EEEEEEc-CCeEEEEECC---CCcEE----EEc-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 858 SLLVIGC-YQSLELWNMS---ENKTM----TLT-AHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 858 ~l~s~s~-dg~I~iwd~~---~~~~~----~~~-~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.+++++. .+...++-+. ++... .+. +|...|+++.|...+.++.|||+||.|.+|+
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 5555555 5555555433 33222 333 4788899999999999999999999999996
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=168.37 Aligned_cols=282 Identities=20% Similarity=0.257 Sum_probs=195.2
Q ss_pred cccccccCccceeeeEeecCCCCEEEEEEec-CCCEEEEEeCC-------CcEEEEECCC---------CceeeEec-cC
Q 002519 613 RGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHD-------KKAVLWHTDT---------LKSKTNLE-EH 674 (913)
Q Consensus 613 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~Lasgs~D-------g~V~vwd~~~---------~~~~~~l~-~h 674 (913)
...+...+-+.-..+.|..|.+.|+.|+-+| |.++|+++..+ ..+.||.+.. .+++..+. .+
T Consensus 43 hll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldtea 122 (370)
T KOG1007|consen 43 HLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEA 122 (370)
T ss_pred EEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHH
Confidence 3344444334444566788999999999999 55666666542 3578998863 33444454 46
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEec-----cCCCCeEEEEEcCC-CCeEEEEEeCCCcEEEEEc
Q 002519 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSI 748 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~-----~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~iwdl 748 (913)
-+.|.||.|.|++..|++-. |..|.+|++.+..+.+..+. ++....++-+|+|. ..+.+ ....|+++..||+
T Consensus 123 vg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv-~tt~d~tl~~~D~ 200 (370)
T KOG1007|consen 123 VGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV-ATTSDSTLQFWDL 200 (370)
T ss_pred hCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE-EEeCCCcEEEEEc
Confidence 67899999999999998877 88899999998554333332 35667888899993 33344 3445999999999
Q ss_pred CCCeeeEEeeC-C---ceEEEEecCCCEEEE-EEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC
Q 002519 749 NNGSCTRVFKG-G---TAQMRFQPHLGRYLA-AAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED 821 (913)
Q Consensus 749 ~~~~~~~~~~~-~---~~~v~~s~~~~~ll~-~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~-~l~s~s~d 821 (913)
++.++...++. + +..+.|.|+..++++ ++.||.|+|||.+.. .++.++.+|..+|.++.|+|... +|++++.|
T Consensus 201 RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 201 RTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred cchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 99887776654 2 566889998876555 556899999999875 68889999999999999999665 88899999
Q ss_pred -eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-E
Q 002519 822 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-Y 899 (913)
Q Consensus 822 -~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~ 899 (913)
.|.+|...+-..... +.|..+....-.......++ -+..+.+.++..|++.|++++|+.-.. +
T Consensus 281 s~V~Lsca~svSSE~q-------------i~~~~dese~e~~dseer~k--pL~dg~l~tydehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 281 SAVNLSCASSVSSEQQ-------------IEFEDDESESEDEDSEERVK--PLQDGQLETYDEHEDSVYALAWSSADPWI 345 (370)
T ss_pred ceeEEEeccccccccc-------------cccccccccCcchhhHHhcc--cccccccccccccccceEEEeeccCCCee
Confidence 899988754321111 11111100000000001122 344555567889999999999987555 6
Q ss_pred EEEEeCCCcEEE
Q 002519 900 VASASHDKFVKL 911 (913)
Q Consensus 900 Lasgs~DG~I~I 911 (913)
+|+-+.||+|.|
T Consensus 346 FASLSYDGRviI 357 (370)
T KOG1007|consen 346 FASLSYDGRVII 357 (370)
T ss_pred EEEeccCceEEe
Confidence 788899999876
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-16 Score=175.74 Aligned_cols=263 Identities=12% Similarity=0.195 Sum_probs=181.9
Q ss_pred EEEEeCCCcEEEEECCC-Cc--eeeEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEEcCCCCce--eEEeccCCCCe
Q 002519 648 LATGGHDKKAVLWHTDT-LK--SKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYS--LRTFMGHSASV 721 (913)
Q Consensus 648 Lasgs~Dg~V~vwd~~~-~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~Iwdl~~~~~~--~~~~~~h~~~V 721 (913)
+++...++.|++||+.+ ++ .+..+. +.+....++++|++++|++++. ++.|.+|+++..+.. +... ......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCc
Confidence 34446789999999964 33 444554 3456788999999999877754 888999999743332 2222 233456
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEEcCCC----eeeEEeeC--CceEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEE
Q 002519 722 MSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRL 794 (913)
Q Consensus 722 ~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~~~--~~~~v~~s~~~~~ll~~~~-dg~I~i~D~~t~~~~~ 794 (913)
..|+|+|+++.++++...++.|.+|++++. +.+..+.+ +...+.++|++++++++.. ++.|.+||+.+...+.
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 789999999988877777999999999742 22232322 3466789999998877665 6899999998743221
Q ss_pred -------EecCCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCC-CCCceEEEeecC------CCceEEEEEeCCCCE
Q 002519 795 -------SLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSG-SEGECVHELSCN------GNKFHSCVFHPTYPS 858 (913)
Q Consensus 795 -------~l~~h~~~V~sl~~spdg~~l~s~s~-d-~I~vwdl~~~-~~~~~i~~~~~~------~~~i~~l~~sp~g~~ 858 (913)
.+. .......++|+|+|++++++.. + +|.+||+... ...+.+..+... ......+.++|++++
T Consensus 163 ~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 163 AQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred ccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 111 1234678999999999988876 3 9999999742 222334433221 112346889999999
Q ss_pred EEEEEc-CCeEEEEECCCCc-EEEEccc---CCCeEEEEEeCCCCEEEEEeC-CCcEEEeC
Q 002519 859 LLVIGC-YQSLELWNMSENK-TMTLTAH---EGLIAALAVSTETGYVASASH-DKFVKLWK 913 (913)
Q Consensus 859 l~s~s~-dg~I~iwd~~~~~-~~~~~~h---~~~V~~l~~spdg~~Lasgs~-DG~I~IWd 913 (913)
++++.. ++.|.+|++.... ...+.++ ......+.|+|+|++|++++. +++|.||+
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 999864 6799999986532 2222222 235668999999999998775 89999984
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-16 Score=172.69 Aligned_cols=261 Identities=13% Similarity=0.154 Sum_probs=181.1
Q ss_pred CCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEe-CCCcEEEEECC-CCce--eeEeccCCCCeEEEEECC
Q 002519 610 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTD-TLKS--KTNLEEHSSLITDVRFSP 685 (913)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~-~~~~--~~~l~~h~~~V~~l~fsp 685 (913)
..+..|++...-.++.+..+. +.+....++|+|++++|++++ .++.|.+|+++ +++. +.... .......|+|+|
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~ 89 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH 89 (330)
T ss_pred CCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC
Confidence 344455553222455666665 346688899999999987765 47889999997 3332 22222 334577899999
Q ss_pred CCCEEEEEeC-CCeEEEEEcCCCCce---eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE------
Q 002519 686 SMPRLATSSF-DKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR------ 755 (913)
Q Consensus 686 dg~~Lasgs~-Dg~V~Iwdl~~~~~~---~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~------ 755 (913)
++++|++++. ++.|.+|++++.+.. +..+. +...+.+++|+|+++.++++...++.|++||+++...+.
T Consensus 90 ~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~ 168 (330)
T PRK11028 90 QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE 168 (330)
T ss_pred CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence 9999988875 889999999753322 22222 334567789999999888888888999999998633221
Q ss_pred -Ee--eCCceEEEEecCCCEEEEEEc-CCeEEEEECCC--C--eEEEEecCC------CCCeEEEEEcCCCCEEEEEeCC
Q 002519 756 -VF--KGGTAQMRFQPHLGRYLAAAA-ENVVSILDAET--Q--ACRLSLQGH------TKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 756 -~~--~~~~~~v~~s~~~~~ll~~~~-dg~I~i~D~~t--~--~~~~~l~~h------~~~V~sl~~spdg~~l~s~s~d 821 (913)
.. ..+...+.|+|++.+++++.. ++.|.+||+.. + +.+..+..+ ......+.|+|++++|+++...
T Consensus 169 ~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~ 248 (330)
T PRK11028 169 VTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT 248 (330)
T ss_pred eecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC
Confidence 11 123457899999999988876 89999999873 3 333333321 1223468899999998888654
Q ss_pred --eEEEEECCCCC-CCceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 002519 822 --SVRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS 874 (913)
Q Consensus 822 --~I~vwdl~~~~-~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~I~iwd~~ 874 (913)
.|.+|++.... ..+.+..+.. ......+.|+|+|++|+++.. +++|.+|+++
T Consensus 249 ~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 249 ASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 89999996543 2233333333 234567899999999998876 7899999874
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=184.05 Aligned_cols=279 Identities=15% Similarity=0.216 Sum_probs=208.4
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccC---CCCeEEEEECC--CCCEEEEEeCCCeEEEEEcCCC
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH---SSLITDVRFSP--SMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h---~~~V~~l~fsp--dg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
...-..+.|+|-...++++...-+|+|||.+.++....|..+ ...|+.+.+-. |..+|++|+.||.||||+-...
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 335667888998889999987889999999999888877654 45688888865 4568999999999999975432
Q ss_pred C----ceeEEecc-------CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceE----EE-EecCCC
Q 002519 708 G----YSLRTFMG-------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ----MR-FQPHLG 771 (913)
Q Consensus 708 ~----~~~~~~~~-------h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~----v~-~s~~~~ 771 (913)
. +.+..+.+ ..+.-.-++|....++|+++| +-..|+|||.....++..+..+..+ +. ....++
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 2 22222221 111113367887777777555 4789999999999888877654322 22 223468
Q ss_pred EEEEEEcCCeEEEEECCCCe---EEEEecCCCCC--eEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCCceEEEeecC-
Q 002519 772 RYLAAAAENVVSILDAETQA---CRLSLQGHTKP--IDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCN- 843 (913)
Q Consensus 772 ~ll~~~~dg~I~i~D~~t~~---~~~~l~~h~~~--V~sl~~spdg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~- 843 (913)
.+++|..||.|++||.+... .+...+.|... |..+.+-+.|- .|++|+.+ .|++||++.......+.....-
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence 88999999999999998753 56667778877 99999998776 48888888 9999999985222222222211
Q ss_pred -CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-------cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 844 -GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-------HEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 844 -~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-------h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+...+++..|+..+.|++|+. +.|+||++.......+.. ..+.+.|++|+|..-++|+|+.|.+|.||.
T Consensus 1303 yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred cCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 335899999999998988888 999999998776553333 345789999999999999999999999983
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-16 Score=167.74 Aligned_cols=234 Identities=16% Similarity=0.255 Sum_probs=182.6
Q ss_pred CCCEEEEE---eCCCcEEEEECC-CCce---eeEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEEcCCCC------c
Q 002519 644 DGKLLATG---GHDKKAVLWHTD-TLKS---KTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPG------Y 709 (913)
Q Consensus 644 dg~~Lasg---s~Dg~V~vwd~~-~~~~---~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~Iwdl~~~~------~ 709 (913)
+.++||+. +..|...|.-+. +|+. .-.+.+|++.|.+++|+|. ...||+||+|.+|.||.+...+ .
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 44566552 223344444332 3332 3356799999999999995 5589999999999999997533 4
Q ss_pred eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--CCceEEEEecCCCEEEEEEcCCeEEEEEC
Q 002519 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDA 787 (913)
Q Consensus 710 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~dg~I~i~D~ 787 (913)
.+..+.+|...|--+.|+|...++|++++.|.+|.+||+.+++.+..+. .-+.++.|+.+|..+++++.|..|+|||.
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dp 202 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDP 202 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcC
Confidence 5778899999999999999999999999999999999999998776665 34677899999999999999999999999
Q ss_pred CCCeEEEEecCCCCC-eEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEE
Q 002519 788 ETQACRLSLQGHTKP-IDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 862 (913)
Q Consensus 788 ~t~~~~~~l~~h~~~-V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~ 862 (913)
++++.+..-.+|.+. -..+.|..+|.++.+|-.. .+-+||-...++...+.++.. .+.|.---|.+|...|+.+
T Consensus 203 r~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~ 281 (472)
T KOG0303|consen 203 RRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLC 281 (472)
T ss_pred CCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEE
Confidence 999999988888763 4456688888866666433 789999988777766666665 4456666688888877655
Q ss_pred E-cCCeEEEEECCCCcE
Q 002519 863 G-CYQSLELWNMSENKT 878 (913)
Q Consensus 863 s-~dg~I~iwd~~~~~~ 878 (913)
+ .|+.|+.|.+.....
T Consensus 282 GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 282 GKGDSSIRYFEITNEPP 298 (472)
T ss_pred ecCCcceEEEEecCCCc
Confidence 5 688999999987763
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-17 Score=167.86 Aligned_cols=240 Identities=21% Similarity=0.330 Sum_probs=181.0
Q ss_pred cCCCCEEEEEEecCC----CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEEcC
Q 002519 631 ASTSKVICCHFSSDG----KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 631 ~H~~~V~~l~fspdg----~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~Iwdl~ 705 (913)
.|....+.|+|+-|. .+||+|+.-|.|+|.|+.+++....+.+|...|..|+|+|+. .+|+++|.|..||+|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 467778888887643 489999999999999999999999999999999999999986 588999999999999999
Q ss_pred CCCceeEEec---cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE---------------eeC--------
Q 002519 706 NPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV---------------FKG-------- 759 (913)
Q Consensus 706 ~~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~---------------~~~-------- 759 (913)
+ ..++..|. +|.+.|.+++|+++++ .|++|+.|..|++|++...+.... |..
T Consensus 167 ~-~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 T-DVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred C-CeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8 67776664 7999999999999988 556999999999999984332111 100
Q ss_pred --------CceEEEEecCCCEEEEEEcCCeEEEEECC-CCe-------------EEEEecCCCCCeEE--EEEcCCCCEE
Q 002519 760 --------GTAQMRFQPHLGRYLAAAAENVVSILDAE-TQA-------------CRLSLQGHTKPIDS--VCWDPSGELL 815 (913)
Q Consensus 760 --------~~~~v~~s~~~~~ll~~~~dg~I~i~D~~-t~~-------------~~~~l~~h~~~V~s--l~~spdg~~l 815 (913)
.+.+++| -++++++-+.++.|..|..- -.+ .+.++.-....|.- .+|++-.++|
T Consensus 245 st~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 0011111 13567777779999999762 111 22223333334444 4556678899
Q ss_pred EEEeCC-eEEEEECCCCCCCceEEE-eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002519 816 ASVSED-SVRVWTVGSGSEGECVHE-LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 816 ~s~s~d-~I~vwdl~~~~~~~~i~~-~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
|.|... .|.+||++..+...+... .......|...+|+.|+..|+..+.|+.|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999988 999999988765433222 22235668899999999999999999999999864
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-16 Score=160.85 Aligned_cols=238 Identities=22% Similarity=0.348 Sum_probs=169.9
Q ss_pred ccceeeeEeecCCCCEEEEEEec--CCCEEEEEeCCCcEEEEECC---------CCceeeEeccCCCCeEEEEECCC--C
Q 002519 621 FSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD---------TLKSKTNLEEHSSLITDVRFSPS--M 687 (913)
Q Consensus 621 ~~~~~~~~l~~H~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~---------~~~~~~~l~~h~~~V~~l~fspd--g 687 (913)
.++......+.|.+.|..|.|.+ -|..+|+++.|++|+||.-. ......++......|++|.|.|. |
T Consensus 47 ~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG 126 (361)
T KOG2445|consen 47 GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG 126 (361)
T ss_pred CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcc
Confidence 47888899999999999999965 68999999999999999752 23345667778889999999986 6
Q ss_pred CEEEEEeCCCeEEEEEcCCCCcee-----EE-------eccCCCCeEEEEEcCCC--CeEEEEEeCC-----CcEEEEEc
Q 002519 688 PRLATSSFDKTVRVWDADNPGYSL-----RT-------FMGHSASVMSLDFHPNK--DDLICSCDGD-----GEIRYWSI 748 (913)
Q Consensus 688 ~~Lasgs~Dg~V~Iwdl~~~~~~~-----~~-------~~~h~~~V~sl~fsp~~--~~ll~sgs~D-----g~I~iwdl 748 (913)
-.||+++.||+||||+.-+..... .. ...+.....|+.|+|.. ..+|+.|+.+ +.++||..
T Consensus 127 LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 127 LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred eEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 689999999999999987633211 11 11355566777777531 2245555433 23444432
Q ss_pred CCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC----CCEEEEEeCCeEE
Q 002519 749 NNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS----GELLASVSEDSVR 824 (913)
Q Consensus 749 ~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd----g~~l~s~s~d~I~ 824 (913)
... .+....+.++.+|.++|+.|+|.|+ ..+|++++.|.|+
T Consensus 207 ~e~-----------------------------------~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~ 251 (361)
T KOG2445|consen 207 NEN-----------------------------------GRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVR 251 (361)
T ss_pred cCC-----------------------------------cceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEE
Confidence 211 1112344566789999999999995 3478889988999
Q ss_pred EEECCCC-----------------CCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC---CcEEEEccc
Q 002519 825 VWTVGSG-----------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE---NKTMTLTAH 884 (913)
Q Consensus 825 vwdl~~~-----------------~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~---~~~~~~~~h 884 (913)
||.++.. -....+..+..|.+.|..+.|.-.|..|.+.|.||.|++|...- .++.....-
T Consensus 252 I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 252 IFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKA 331 (361)
T ss_pred EEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEec
Confidence 9998731 12345667888999999999999999999999999999997643 234433333
Q ss_pred CCCeEEEEE
Q 002519 885 EGLIAALAV 893 (913)
Q Consensus 885 ~~~V~~l~~ 893 (913)
++.|....|
T Consensus 332 e~~~~~~~~ 340 (361)
T KOG2445|consen 332 EGSVTKPDF 340 (361)
T ss_pred cCCCCCccc
Confidence 344443333
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.4e-16 Score=179.76 Aligned_cols=293 Identities=19% Similarity=0.228 Sum_probs=208.5
Q ss_pred ccceeeeEeecCCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCC-------ceeeEeccCCCCeEEEEECCCCCEEEE
Q 002519 621 FSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSMPRLAT 692 (913)
Q Consensus 621 ~~~~~~~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~-------~~~~~l~~h~~~V~~l~fspdg~~Las 692 (913)
..-..+..+..|...|..++.++.. .+|++|+.||+|+|||+... +...++......+.++.+.+.+..+|+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 3457888899999999999988755 89999999999999998632 233344445788999999999999999
Q ss_pred EeCCCeEEEEEcCCCC--c----eeEEeccC-CCCeE-EEEEcCCCC-eEEEEEeCCCcEEEEEcCCCeeeEEee-----
Q 002519 693 SSFDKTVRVWDADNPG--Y----SLRTFMGH-SASVM-SLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFK----- 758 (913)
Q Consensus 693 gs~Dg~V~Iwdl~~~~--~----~~~~~~~h-~~~V~-sl~fsp~~~-~ll~sgs~Dg~I~iwdl~~~~~~~~~~----- 758 (913)
++.||.|++.+++-.. + ..+....+ .+.+. .-+|..... .+++.+...+.|..||+++......++
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 9999999999997511 1 11111111 22233 333433323 367778888999999999876554443
Q ss_pred CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec-CCCCCeEEEEEcCCC---CEEEEEeC-C--eEEEEECCCC
Q 002519 759 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSG---ELLASVSE-D--SVRVWTVGSG 831 (913)
Q Consensus 759 ~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~-~h~~~V~sl~~spdg---~~l~s~s~-d--~I~vwdl~~~ 831 (913)
|-+++++.+|.+.+++.|+..|.+.+||++-+.++.... .+..+|+.++.+|-. .+.++++. . .|.+|++.++
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 457889999999999999999999999999988877665 245778888877733 35555554 3 8999999887
Q ss_pred CCCceEEEe----------e------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--E-------------
Q 002519 832 SEGECVHEL----------S------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--T------------- 880 (913)
Q Consensus 832 ~~~~~i~~~----------~------~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~------------- 880 (913)
.....+..- . .+......+++...+..+++|+.|..|+.||....+.. .
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~ 1355 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSE 1355 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccch
Confidence 332222111 0 11112344566667788999999999999997542211 0
Q ss_pred ------------------------------------------EcccCCCeEEEEEeCC-CCEEEEEeCCCcEEEeC
Q 002519 881 ------------------------------------------LTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 913 (913)
Q Consensus 881 ------------------------------------------~~~h~~~V~~l~~spd-g~~Lasgs~DG~I~IWd 913 (913)
-..|...|+++++... -.+|++++.||.|+||+
T Consensus 1356 s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1356 SYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0116667888776543 35899999999999996
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=161.26 Aligned_cols=239 Identities=20% Similarity=0.369 Sum_probs=177.6
Q ss_pred ecCCCCEEEEEEecCCC-----EEEEEeCCCcEEEEECCCCceeeE---------eccCCCCeEEEEECC-CCCEEEEEe
Q 002519 630 RASTSKVICCHFSSDGK-----LLATGGHDKKAVLWHTDTLKSKTN---------LEEHSSLITDVRFSP-SMPRLATSS 694 (913)
Q Consensus 630 ~~H~~~V~~l~fspdg~-----~Lasgs~Dg~V~vwd~~~~~~~~~---------l~~h~~~V~~l~fsp-dg~~Lasgs 694 (913)
..|.-+++.+-|.|+.+ +|||++ ..+|||.+...+.... -..+..++++..|+. +-++|.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 35888999999999763 666654 4799999874221111 124677899999986 566889999
Q ss_pred CCCeEEEEEcCCC--CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-eC-----CceEEEE
Q 002519 695 FDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KG-----GTAQMRF 766 (913)
Q Consensus 695 ~Dg~V~Iwdl~~~--~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~-----~~~~v~~ 766 (913)
-|-++.|||++++ +.....+..|..+|.+|+|...+..+|++++.||.||+||++..+....+ +. ....++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 9999999999983 23456677899999999999998999999999999999999987654433 22 2234667
Q ss_pred ecCCCEEEEE-Ec-CCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCC---CceEE
Q 002519 767 QPHLGRYLAA-AA-ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSE---GECVH 838 (913)
Q Consensus 767 s~~~~~ll~~-~~-dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg-~~l~s~s~d-~I~vwdl~~~~~---~~~i~ 838 (913)
++.+..+++. .. ...|.|.|++.. .++..+.+|...|+.|+|.|.. ..|+++++| .+.|||+..... ...+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 7766555443 33 458999999986 6888999999999999999955 489999999 999999975422 12222
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002519 839 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 871 (913)
Q Consensus 839 ~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iw 871 (913)
.+. .+..|..+.|++...-.++.+.++++.|.
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 233 46789999999755444444555555543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-16 Score=159.21 Aligned_cols=230 Identities=20% Similarity=0.310 Sum_probs=180.6
Q ss_pred CCCEEEEEEe-------cCCCEEEEEeCCCcEEEEECCCCceeeEecc--CCC---CeEEEEECCCCCEEEEEeCCCeEE
Q 002519 633 TSKVICCHFS-------SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSS---LITDVRFSPSMPRLATSSFDKTVR 700 (913)
Q Consensus 633 ~~~V~~l~fs-------pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~--h~~---~V~~l~fspdg~~Lasgs~Dg~V~ 700 (913)
...|+..+|- |+..++|+.+.+.-|.+||.-+|+....+++ |-. ...+|+|+|||..|++|- ...|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence 3457777775 6778999999999999999999998888775 322 356899999999998775 67899
Q ss_pred EEEcCCCCceeE--Eec-----cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---eCCceEEEEecCC
Q 002519 701 VWDADNPGYSLR--TFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHL 770 (913)
Q Consensus 701 Iwdl~~~~~~~~--~~~-----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~s~~~ 770 (913)
|+|+..++.... ... +..+.|.|++|+|.....++.++....+-||.-.....+..+ .++++.++|.+++
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc
Confidence 999955454322 222 336789999999998888889999999999888777766655 4678999999999
Q ss_pred CEEEEEEc-CCeEEEEECCCC-eEEEEecCCCC-CeE--EEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCC
Q 002519 771 GRYLAAAA-ENVVSILDAETQ-ACRLSLQGHTK-PID--SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 844 (913)
Q Consensus 771 ~~ll~~~~-dg~I~i~D~~t~-~~~~~l~~h~~-~V~--sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~ 844 (913)
+++++++. +..|.+||++.. .++..+..|.. .-- -+...|++++|++|+.+ .|++||+.... ..+..+..+.
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~s 340 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNYS 340 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--Cccccccccc
Confidence 99999987 789999999975 56777777765 222 34556889999999888 99999998632 3455566677
Q ss_pred CceEEEEEeCCCCEEEEEEcC
Q 002519 845 NKFHSCVFHPTYPSLLVIGCY 865 (913)
Q Consensus 845 ~~i~~l~~sp~g~~l~s~s~d 865 (913)
..++.++++|--..+++++..
T Consensus 341 d~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 341 DTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccceecCcccceeeeccCc
Confidence 889999999997777776654
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-17 Score=179.02 Aligned_cols=241 Identities=22% Similarity=0.298 Sum_probs=177.7
Q ss_pred eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC-------CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCC
Q 002519 668 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 740 (913)
Q Consensus 668 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~-------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D 740 (913)
..++..|...|+.+.|.+-...|++++.||+|.+|++.. .-+.+.+|.+|.++|.|+++.+++.+++ +|+-|
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y-sgg~D 365 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY-SGGID 365 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE-eeccC
Confidence 347778999999999999999999999999999999932 1246789999999999999999887665 99999
Q ss_pred CcEEEEEcCCC----------eeeEEeeC---CceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCC--CCCeEE
Q 002519 741 GEIRYWSINNG----------SCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH--TKPIDS 805 (913)
Q Consensus 741 g~I~iwdl~~~----------~~~~~~~~---~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h--~~~V~s 805 (913)
|+|++|++... .....+.+ .+..+.++.....++.++.||+|++|+.....+ .++... .+.-.+
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99999976521 11122333 344578888888999999999999999877655 333321 222344
Q ss_pred EEEcCCCCEEEEEeCC--eEEEEECCCCCCCceEEEeec-------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002519 806 VCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC-------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 876 (913)
Q Consensus 806 l~~spdg~~l~s~s~d--~I~vwdl~~~~~~~~i~~~~~-------~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~ 876 (913)
+.|-.....+...+.. ..-++++... ..+..+.. ....+..+.++|...+.+++..|+.|+++|..++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~---s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVV---SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhh---hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 4444332111111111 2223333222 11221111 1234778899999999999999999999999999
Q ss_pred cEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 877 KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 877 ~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+++ ...+|...|+++++.|+|.+|+++++||.|++|+
T Consensus 522 ~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 522 KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred ccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence 988 7889999999999999999999999999999996
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=166.16 Aligned_cols=200 Identities=19% Similarity=0.317 Sum_probs=160.1
Q ss_pred eEeecCCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCC-------ceeeEeccCCCCeEEEEECCCC-CEEEEEeCCC
Q 002519 627 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSFDK 697 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~-------~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg 697 (913)
-.+.+|++.|.+++|+| +...||+|+.|.+|.||.+... +.+..|.+|...|--|.|+|.. +.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 35789999999999999 5679999999999999998643 4577889999999999999974 5789999999
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC----ceEEEEecCCCEE
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRY 773 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~s~~~~~l 773 (913)
+|.||++.+ +..+.++. |.+.|++++|+-+|. +|++.+.|..|||||.++++.+..-.++ ...+.|..++. +
T Consensus 155 ~v~iWnv~t-geali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGT-GEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccC-CceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 999999998 55555565 999999999999977 6679999999999999999988765432 23466777777 5
Q ss_pred EEEEc----CCeEEEEECCCCeE---EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC
Q 002519 774 LAAAA----ENVVSILDAETQAC---RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 831 (913)
Q Consensus 774 l~~~~----dg~I~i~D~~t~~~---~~~l~~h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~ 831 (913)
++++. +..+.+||...... ..++. ..+.|.---|++|.++|+.++.+ .||.|.+...
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 55543 67899998776532 23333 34556666788898888777765 9999999754
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-16 Score=153.88 Aligned_cols=227 Identities=19% Similarity=0.270 Sum_probs=172.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcCC---------CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 002519 677 LITDVRFSPSMPRLATSSFDKTVRVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 747 (913)
Q Consensus 677 ~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~---------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwd 747 (913)
.|.+-+|+|.+++|++|+.+|.|.|+.+.+ ++..+..+.+|+++|+.++|+. . +|++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~-~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--D-FLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--h-heeecc-CceEEEee
Confidence 466678999999999999999999999864 2344566689999999999993 3 554666 69999998
Q ss_pred cCCCee----eEEe------------eCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC
Q 002519 748 INNGSC----TRVF------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 811 (913)
Q Consensus 748 l~~~~~----~~~~------------~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd 811 (913)
.+.... .+.+ -..++.+...|..+.++.++.|+.++.||+++++...++++|++.|.+++--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 765322 1100 124567788899999999999999999999999999999999999999998555
Q ss_pred CCEEEEEeCC-eEEEEECCCCCCCceEEEeec-------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc
Q 002519 812 GELLASVSED-SVRVWTVGSGSEGECVHELSC-------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 883 (913)
Q Consensus 812 g~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~-------~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 883 (913)
..-|++|++| ++||||.++.+....+...+. .+..|.+++.+.+ ++ +++....+.+|+++..++..+..
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed--Wl-vCGgGp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED--WL-VCGGGPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc--eE-EecCCCceeEEeccCCCceEEEe
Confidence 5678899999 999999998854444433322 1234555555443 44 44555689999999999998888
Q ss_pred cCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 884 HEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 884 h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
....|..+.|..| .+++++....|.-|
T Consensus 245 ipa~v~~v~F~~d--~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVDD--CVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeecc--eEEEeccccceeee
Confidence 8888999999766 56667655555544
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-16 Score=162.84 Aligned_cols=249 Identities=16% Similarity=0.199 Sum_probs=178.3
Q ss_pred eEeecCCCCEEEEEEec--CCCEEEEEeCCCcEEEEECCCCceeeE--eccCC-CCeEEEEECCCCCEEEEEeC----CC
Q 002519 627 NSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHS-SLITDVRFSPSMPRLATSSF----DK 697 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fsp--dg~~Lasgs~Dg~V~vwd~~~~~~~~~--l~~h~-~~V~~l~fspdg~~Lasgs~----Dg 697 (913)
..+++|...+..++|.. ....+.+|+.||+|++||++....... +..+. .+..|++.+..+..+++|.. |-
T Consensus 64 ~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A 143 (376)
T KOG1188|consen 64 EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDA 143 (376)
T ss_pred heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCce
Confidence 34666777778888876 467899999999999999986554443 44555 56778887777888888864 67
Q ss_pred eEEEEEcCCCCceeEE-eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe----eeEEee--CCceEEEEecCC
Q 002519 698 TVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS----CTRVFK--GGTAQMRFQPHL 770 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~----~~~~~~--~~~~~v~~s~~~ 770 (913)
.|.+||++.....++. ...|.+.|++|+|+|.+..+|++|+.||.|.+||++... .+.++. ..+..+.|..++
T Consensus 144 ~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 144 SVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred EEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence 8999999986664554 457999999999999999999999999999999998653 222333 235567787765
Q ss_pred -CEEEEEEcCCeEEEEECCCCeEEEEecCCC------------CCeEEEEEcCCCCEEEEEeCC--eEEEEEC---CCCC
Q 002519 771 -GRYLAAAAENVVSILDAETQACRLSLQGHT------------KPIDSVCWDPSGELLASVSED--SVRVWTV---GSGS 832 (913)
Q Consensus 771 -~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~------------~~V~sl~~spdg~~l~s~s~d--~I~vwdl---~~~~ 832 (913)
+++.+.+..+++.+|+++.+.+...+.... ..+.......++.+++.++.+ ...++-+ .++.
T Consensus 224 ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~ 303 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS 303 (376)
T ss_pred cceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccccc
Confidence 578888999999999999887665544221 112222112234455555443 4444433 3444
Q ss_pred CCceEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002519 833 EGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 833 ~~~~i~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 875 (913)
....+..+.+ |...|.++.|.-.+.++++|+.||.|.+|....
T Consensus 304 ~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 304 LLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred ccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 4444555554 566788889998999999999999999998643
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=175.41 Aligned_cols=257 Identities=17% Similarity=0.267 Sum_probs=185.2
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEEcCCCCce-----eEEeccCCCCeEEEEEcC
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYS-----LRTFMGHSASVMSLDFHP 728 (913)
Q Consensus 655 g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~Iwdl~~~~~~-----~~~~~~h~~~V~sl~fsp 728 (913)
+.+.||+++........-.-...|+|++|+|.. .+||.|+.+|.|.+||++..... ......|..+|+.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 479999998653333333456789999999964 57788888999999999875542 123346899999999976
Q ss_pred CCCe-EEEEEeCCCcEEEEEcCCCeeeE------E---------eeCCceEEEEecCC-CEEEEEEcCCeEEEEECCCC-
Q 002519 729 NKDD-LICSCDGDGEIRYWSINNGSCTR------V---------FKGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQ- 790 (913)
Q Consensus 729 ~~~~-ll~sgs~Dg~I~iwdl~~~~~~~------~---------~~~~~~~v~~s~~~-~~ll~~~~dg~I~i~D~~t~- 790 (913)
+... -|++++.||.|+.|+++.-.... . -...+..+.|.+.. ..+++|+.+|.|..-+....
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 5433 24488889999999987543310 0 11245667787765 56778888898877433322
Q ss_pred -------eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCE-EEE
Q 002519 791 -------ACRLSLQGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS-LLV 861 (913)
Q Consensus 791 -------~~~~~l~~h~~~V~sl~~spdg~-~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~-l~s 861 (913)
+....+..|.++|+++.++|-+. +|.++++.+|+||.... ....+..+..+...+++++|||.... |++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~--~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV--IASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC--CCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 12334556889999999999777 45555533999999862 22555666666777999999998754 555
Q ss_pred EEcCCeEEEEECCCCcEE---EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 862 IGCYQSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 862 ~s~dg~I~iwd~~~~~~~---~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+..||.|.|||+...... ....+....+.+.|+++|++|++|...|.|+||+
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 666999999998654432 4444567778888999999999999999999985
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-15 Score=149.03 Aligned_cols=268 Identities=16% Similarity=0.227 Sum_probs=192.1
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCC----------CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTDT----------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~----------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
..|.+-+|+|.+++|++|..+|.|.|+.+.+ ...+..+.+|+++|+.++|+ ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3577788999999999999999999998853 22345567999999999998 34666666 59999998
Q ss_pred cCCCCcee-----EEe-------ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEE---EEec
Q 002519 704 ADNPGYSL-----RTF-------MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQP 768 (913)
Q Consensus 704 l~~~~~~~-----~~~-------~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v---~~s~ 768 (913)
.+...+.. ... .-.--.|+++...|..+.+|.+ +.|+.++.||+++|+..+.++++...+ ....
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A-gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA-GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe-cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 86522210 000 1122468899999987777744 479999999999999999999987543 3445
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEecCCC----------CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEE
Q 002519 769 HLGRYLAAAAENVVSILDAETQACRLSLQGHT----------KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH 838 (913)
Q Consensus 769 ~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~----------~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~ 838 (913)
..+.+++++.||++++||.++.+++..+.... .+|-+++. +..++++|+.-.+.+|.+++.+ ..++.
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse-~t~vf 243 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSE-STCVF 243 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCC-ceEEE
Confidence 56889999999999999999999988875422 23555544 5668887777799999998762 23443
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCC-CCEEEEEeCCCcEEEeC
Q 002519 839 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 913 (913)
Q Consensus 839 ~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd-g~~Lasgs~DG~I~IWd 913 (913)
.+ ...+..|.|..+ .+++++..+.|.-|.+..--...+.......++..|+-. -++|..++...++.|++
T Consensus 244 pi---pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 244 PI---PARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ec---ccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 33 456777888655 578888788898888765443344444444444444321 35666677777787763
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-16 Score=167.24 Aligned_cols=259 Identities=17% Similarity=0.262 Sum_probs=190.2
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEE-C-------CCCCEEEEEeCCCeEEEE
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-S-------PSMPRLATSSFDKTVRVW 702 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~f-s-------pdg~~Lasgs~Dg~V~Iw 702 (913)
.|...|.||.|+.....+.+++++-.+.-||+.+ .....+.-....|....+ - .....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~-~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSR-DSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccc-hhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4677788999998887777766444444444433 323322222222222221 1 123478889999999888
Q ss_pred EcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee---eEEeeCCceEEEEecCCCEEEEEEcC
Q 002519 703 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKGGTAQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 703 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~---~~~~~~~~~~v~~s~~~~~ll~~~~d 779 (913)
+-. ++.-+.+..|.+.|.+-.|+|+|..++ ++++||.|++|.-. |.. +..+...+.+++|.|+.+.++.+. .
T Consensus 91 ~k~--~rVE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g 165 (737)
T KOG1524|consen 91 NKS--ARVERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-G 165 (737)
T ss_pred ccc--chhhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEec-C
Confidence 754 566777889999999999999998877 89999999999854 332 233456788999999988877654 4
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCE
Q 002519 780 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 858 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~ 858 (913)
+.+.|--+.-...+...+.|++-|.++.|++..+++++|++| ..+|||-- ...+..-..|+.+|++++|.|+ +.
T Consensus 166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~----G~~Lf~S~~~ey~ITSva~npd-~~ 240 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ----GANLFTSAAEEYAITSVAFNPE-KD 240 (737)
T ss_pred CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc----CcccccCChhccceeeeeeccc-cc
Confidence 566676777666777888999999999999999999999999 99999964 2556666778999999999999 44
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 859 LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 859 l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
+++++ .+++++ .....+.|..++|++||..++.|+..|.|.+
T Consensus 241 ~~v~S-~nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 241 YLLWS-YNTARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeee-eeeeee----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 44444 344442 2345678999999999999999999887753
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.1e-15 Score=169.77 Aligned_cols=279 Identities=17% Similarity=0.296 Sum_probs=207.7
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC----CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 706 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~----~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 706 (913)
.|.-.++|.++||+++++|+|..||.|.||.--. ......++-|...|.++.|+++|.+|++|+..|.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4677799999999999999999999999996432 234567888999999999999999999999999999999998
Q ss_pred CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--------------CCceEEEEecCCCE
Q 002519 707 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------------GGTAQMRFQPHLGR 772 (913)
Q Consensus 707 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--------------~~~~~v~~s~~~~~ 772 (913)
++ ...+..-.+.|..+.++||++.+. .+..|+.|.+....+......+. +-...++++|.-+.
T Consensus 283 ~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 283 GK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred CC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 54 445556778999999999987554 66679999998875544333221 22345788898888
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEecC-----C------CCCeEEEEEcCCCCEEEEEe---------C-C-eEEEEECCC
Q 002519 773 YLAAAAENVVSILDAETQACRLSLQG-----H------TKPIDSVCWDPSGELLASVS---------E-D-SVRVWTVGS 830 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t~~~~~~l~~-----h------~~~V~sl~~spdg~~l~s~s---------~-d-~I~vwdl~~ 830 (913)
++..+..+.|.+||+-+.+.++.+.. + ...++.++.+-.|.++++.. + . .+++|-...
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 99999999999999988766655431 1 22467778888899988874 1 2 689998865
Q ss_pred CCCCceE--EEeecCCCceEEEEE-eCCCC-EEEEEEcCCeEEEEECCCCc----------EE-EEcccCCCeEEEEEeC
Q 002519 831 GSEGECV--HELSCNGNKFHSCVF-HPTYP-SLLVIGCYQSLELWNMSENK----------TM-TLTAHEGLIAALAVST 895 (913)
Q Consensus 831 ~~~~~~i--~~~~~~~~~i~~l~~-sp~g~-~l~s~s~dg~I~iwd~~~~~----------~~-~~~~h~~~V~~l~~sp 895 (913)
....-.+ .....|+..+...++ ++... ..++++.||.++||-+...+ +. .-.-|..++.+++|+.
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 5332222 223345655555444 44333 78999999999999883321 11 1123788999999999
Q ss_pred CCCEEEEEeCCCcEEEeC
Q 002519 896 ETGYVASASHDKFVKLWK 913 (913)
Q Consensus 896 dg~~Lasgs~DG~I~IWd 913 (913)
||..| +++.|++|.|||
T Consensus 520 dGsll-a~s~~~~Itiwd 536 (792)
T KOG1963|consen 520 DGSLL-AVSFDDTITIWD 536 (792)
T ss_pred CCcEE-EEecCCEEEEec
Confidence 99654 567788999997
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=167.43 Aligned_cols=236 Identities=15% Similarity=0.245 Sum_probs=175.4
Q ss_pred eeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 626 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 626 ~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
..++++|.+.|+|++|+.||+++|+|+.|+.|.||.-.- ...++ .|.+.|.|+.|+|-...|++|+... .-+|..
T Consensus 46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~ 121 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSP 121 (1081)
T ss_pred ccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhh-ccccCh
Confidence 456889999999999999999999999999999997542 22222 5899999999999999999998643 678988
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-----CCceEEEEecCCC-----EEE
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLG-----RYL 774 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----~~~~~v~~s~~~~-----~ll 774 (913)
+. +.+...+ ....|.+++|..||. +++.|-.||+|.|-+-.....++.-. ..+.+++|+|..+ .+.
T Consensus 122 ~q--K~V~K~k-ss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 122 EQ--KSVSKHK-SSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred hh--hhHHhhh-hheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 75 2222222 346788999999977 55589999999998765444443322 3466788988753 455
Q ss_pred EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEe
Q 002519 775 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 853 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~s 853 (913)
+.....++.+|.+.. +.+..-+.-.-.-.|+.+.++|++++.|+.| .+++|... | ..+.++...+.+|+++..+
T Consensus 198 V~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G---vrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G---VRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-C---eEEeeccccceeEEEEEEc
Confidence 555566676666543 2222222222345688999999999999988 88888643 2 4555555568899999999
Q ss_pred CCCCEEEEEEcCCeEEEEECC
Q 002519 854 PTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 854 p~g~~l~s~s~dg~I~iwd~~ 874 (913)
|++.++++|+.||+|..|++-
T Consensus 273 PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cCCceEEEEEccCeeehhhhH
Confidence 999999999999999999874
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=173.90 Aligned_cols=244 Identities=20% Similarity=0.297 Sum_probs=186.8
Q ss_pred CCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCce--eeE----eccCCCCeEEEEECCCC--CEEEEEeCCCeEEEE
Q 002519 632 STSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS--KTN----LEEHSSLITDVRFSPSM--PRLATSSFDKTVRVW 702 (913)
Q Consensus 632 H~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~--~~~----l~~h~~~V~~l~fspdg--~~Lasgs~Dg~V~Iw 702 (913)
-...|+|++|+| +..+||.|+++|.|.+||+..+.. ... ...|..+|+.+.|..+. ..|+++|.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 456899999999 567889999999999999986654 222 33689999999997654 459999999999999
Q ss_pred EcCCCCceeE-----Eec------cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-----------EEeeCC
Q 002519 703 DADNPGYSLR-----TFM------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-----------RVFKGG 760 (913)
Q Consensus 703 dl~~~~~~~~-----~~~------~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~-----------~~~~~~ 760 (913)
+++.-..+.. ... .....+++++|.+.....|+.|+++|.|..-+....+.. ..+.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 9875322111 111 233568899999988888889999999987433322111 112345
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCCceE
Q 002519 761 TAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECV 837 (913)
Q Consensus 761 ~~~v~~s~~~~~ll~~~~dg~I~i~D~~-t~~~~~~l~~h~~~V~sl~~spdg~-~l~s~s~d-~I~vwdl~~~~~~~~i 837 (913)
+..+.++|-...++.++.|.+|+||... ...++..+..+...|++++|||... .|+++..+ .|.|||+..... ..+
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-~Pv 479 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-EPV 479 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-CCc
Confidence 6778899999888888889999999988 6788888888888999999999876 66666666 999999976533 344
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002519 838 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 876 (913)
Q Consensus 838 ~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~ 876 (913)
...+.+......+.|++.|+.|++|...|.|++|++...
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 444444666777888999999999999999999999643
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-14 Score=148.94 Aligned_cols=231 Identities=17% Similarity=0.290 Sum_probs=171.7
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC--CeEEEEEcCCCCce
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYS 710 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D--g~V~Iwdl~~~~~~ 710 (913)
...|..+.|+.|...|..|+.|| .++|..+..............|.-.-|+.. +||..+.+ +.+++++++. +..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk-~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKK-KTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEccc-Cce
Confidence 44677788999999999999887 678887765543333333445666666644 66655554 4589999886 434
Q ss_pred eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC----ceEEEEecCC--CEEEEEEc--CCeE
Q 002519 711 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHL--GRYLAAAA--ENVV 782 (913)
Q Consensus 711 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~s~~~--~~ll~~~~--dg~I 782 (913)
+..+. ....|.++.++.+ +++ ++-. ..|+|||+++-+.+.++..- ...+++++.. .+++.-+. .|.|
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLv-V~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLV-VCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEE-EEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 44333 5677999999743 344 5543 44999999999988877542 2234455544 45555433 6899
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCCceEEEeecC--CCceEEEEEeCCCCE
Q 002519 783 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPS 858 (913)
Q Consensus 783 ~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~~~~i~~~~~~--~~~i~~l~~sp~g~~ 858 (913)
.+||+.+.+.+..+..|++.+-+++|+++|.+||++++. .||||.+.++ ..+.++.-. ...|.+++|++++.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence 999999999999999999999999999999999999998 7999999877 555555432 345889999999999
Q ss_pred EEEEEcCCeEEEEECCC
Q 002519 859 LLVIGCYQSLELWNMSE 875 (913)
Q Consensus 859 l~s~s~dg~I~iwd~~~ 875 (913)
|.+.+..++|+||.++.
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998864
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-16 Score=170.39 Aligned_cols=235 Identities=20% Similarity=0.279 Sum_probs=167.6
Q ss_pred ceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEe-ccCCCCeEEEEECCC--CCEEEEEeCCCeE
Q 002519 623 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEHSSLITDVRFSPS--MPRLATSSFDKTV 699 (913)
Q Consensus 623 ~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l-~~h~~~V~~l~fspd--g~~Lasgs~Dg~V 699 (913)
+.....+.||++.|.|++|+.||.+|++|+.|-.+.|||.-..+.+..+ .+|...|.+++|-|. ++.|++|..|..|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 4455678999999999999999999999999999999999877777766 489999999999884 5689999999999
Q ss_pred EEEEcCC---------CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE-Ee------------
Q 002519 700 RVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VF------------ 757 (913)
Q Consensus 700 ~Iwdl~~---------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~-~~------------ 757 (913)
+++|+.. ....++.+..|...|..|+..|++.+.|.++++||+|+-||++...... ..
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999985 1234566778999999999999998999999999999999998743211 11
Q ss_pred eCCceEEEEecCCCE-EEEEEcCCeEEEEECCCCeEEEEecC---C----CCCeEEEE-EcCCCCEEEEEeCCeEEEEEC
Q 002519 758 KGGTAQMRFQPHLGR-YLAAAAENVVSILDAETQACRLSLQG---H----TKPIDSVC-WDPSGELLASVSEDSVRVWTV 828 (913)
Q Consensus 758 ~~~~~~v~~s~~~~~-ll~~~~dg~I~i~D~~t~~~~~~l~~---h----~~~V~sl~-~spdg~~l~s~s~d~I~vwdl 828 (913)
.....++.++|...+ +++|+.|-..++||.+...+ .+.. + .....|+. |+|.+- ...+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lk--s~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~------- 266 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLK--SFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQ------- 266 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhcc--CCCCCccccCCCCcccchhheecCccc----cCcc-------
Confidence 123456788887754 55667788999999643211 1111 0 01111111 222110 0000
Q ss_pred CCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002519 829 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 829 ~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 879 (913)
+ .... ....++-+.|+|+|..|++.-....|++||+..++..
T Consensus 267 --g---n~~~----~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 267 --G---NLDR----YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred --c---cccc----ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 0 0000 0112455678999988888888888999998877644
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.8e-15 Score=149.22 Aligned_cols=282 Identities=16% Similarity=0.258 Sum_probs=201.7
Q ss_pred eeeeEeecCCCCEEEEEEec---CCCEEEEEeC----CCcEEEEECC--CCceeeEe-ccCCCCeEEEEECCCCC-----
Q 002519 624 KEANSVRASTSKVICCHFSS---DGKLLATGGH----DKKAVLWHTD--TLKSKTNL-EEHSSLITDVRFSPSMP----- 688 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fsp---dg~~Lasgs~----Dg~V~vwd~~--~~~~~~~l-~~h~~~V~~l~fspdg~----- 688 (913)
+++..+..+ -.++++.|+. .+.+||.|+. .++|.|..++ +++.+..- ..|..+++.+.|.|+..
T Consensus 36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcc
Confidence 334444433 3688888883 3458888873 4677776654 44433222 35889999999999863
Q ss_pred EEEEEeCCCeEEEEEcCCCCcee--------EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee--eE---
Q 002519 689 RLATSSFDKTVRVWDADNPGYSL--------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC--TR--- 755 (913)
Q Consensus 689 ~Lasgs~Dg~V~Iwdl~~~~~~~--------~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~--~~--- 755 (913)
+|||++ ..+|+|.+......+ ..-..+..+++++.|+.-..++|.+++-|-++.|||++++.. ++
T Consensus 115 lLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 115 LLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred hhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence 455554 359999997422111 112246789999999998888999999999999999998732 22
Q ss_pred -EeeCCceEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEe---cCCCCCeEEEEEcCC-CCEEEEEeCC--eEEEEE
Q 002519 756 -VFKGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWDPS-GELLASVSED--SVRVWT 827 (913)
Q Consensus 756 -~~~~~~~~v~~s~~~-~~ll~~~~dg~I~i~D~~t~~~~~~l---~~h~~~V~sl~~spd-g~~l~s~s~d--~I~vwd 827 (913)
.+...+..++|...+ +.|++++.||.|++||++..+--..+ .....+...++|++. -+++++-..| .|.|.|
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 123467789998865 45677788999999999987433332 223567888999984 4588888887 899999
Q ss_pred CCCCCCCceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcE------EEEcccCCCeEEEEEeC-CCCE
Q 002519 828 VGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKT------MTLTAHEGLIAALAVST-ETGY 899 (913)
Q Consensus 828 l~~~~~~~~i~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~I~iwd~~~~~~------~~~~~h~~~V~~l~~sp-dg~~ 899 (913)
++.. ...+..+..|...|+.++|.|.. .+|++++.|..+.|||+..-.. +....-.+.|+.+.|++ ...+
T Consensus 273 iR~P--~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dw 350 (364)
T KOG0290|consen 273 IRVP--CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDW 350 (364)
T ss_pred ecCC--CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCE
Confidence 9865 36778899999999999999954 6788888999999999975332 22234678899999996 4456
Q ss_pred EEEEeCCCcEEE
Q 002519 900 VASASHDKFVKL 911 (913)
Q Consensus 900 Lasgs~DG~I~I 911 (913)
|+.+. ++++.|
T Consensus 351 iai~~-~kklei 361 (364)
T KOG0290|consen 351 IAICF-GKKLEI 361 (364)
T ss_pred EEEEe-cCeeeE
Confidence 76665 444443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.8e-15 Score=150.86 Aligned_cols=225 Identities=16% Similarity=0.261 Sum_probs=173.9
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC---CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
.++.-..+|+|.+|++|+..+|++.....|.||.... .+..+++..|...|++|+|+|..+.|++|+.|..-+||..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 3444567899999999999999999999999998763 5678899999999999999999999999999999999999
Q ss_pred CCCC--ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-------eEEeeCCceEEEEecCCCEEEE
Q 002519 705 DNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-------TRVFKGGTAQMRFQPHLGRYLA 775 (913)
Q Consensus 705 ~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-------~~~~~~~~~~v~~s~~~~~ll~ 775 (913)
..++ ++...+..++..+++|.|+|.++ .|++|+....|.||-++...- .+.++..+.++.|+|++-.+++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 5433 34556667899999999999865 667999999999988875432 2334556788999999999999
Q ss_pred EEcCCeEEEEEC-----CC-------------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCce
Q 002519 776 AAAENVVSILDA-----ET-------------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 836 (913)
Q Consensus 776 ~~~dg~I~i~D~-----~t-------------~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~ 836 (913)
++.|+..+||.. ++ |..+.++....+.|..+.|+|+|..|+-.+.| .+.+-|.....+ .
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~ 241 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--R 241 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--h
Confidence 999999888843 21 12233333456789999999999999999999 898888765431 2
Q ss_pred EEEeecCCCceEEEEEeCC
Q 002519 837 VHELSCNGNKFHSCVFHPT 855 (913)
Q Consensus 837 i~~~~~~~~~i~~l~~sp~ 855 (913)
+..+....-+..++.|-.+
T Consensus 242 v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISE 260 (361)
T ss_pred ccchhhccCCceeeEeecC
Confidence 2222222345555555443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.5e-15 Score=152.62 Aligned_cols=242 Identities=15% Similarity=0.195 Sum_probs=189.0
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEecc--CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 708 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 708 (913)
.|...|.|++|....++|++|+.+++|.+.|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||++...
T Consensus 103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred ccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 4668999999999999999999999999999999887777653 23589999999999999999999999999998633
Q ss_pred ce--eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-E------EeeC---CceEEEEecCCCEEEEE
Q 002519 709 YS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-R------VFKG---GTAQMRFQPHLGRYLAA 776 (913)
Q Consensus 709 ~~--~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~-~------~~~~---~~~~v~~s~~~~~ll~~ 776 (913)
.. ............++.|+|....||++.+..+.+-+||++..... . .+.. .-..+.|++.|..+++.
T Consensus 183 ~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 183 NPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred CCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 22 22333455667889999999999999999999999999865321 1 1111 12457899999999988
Q ss_pred EcCCeEEEEECCCCeEEEEecCCC-------CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC---------------
Q 002519 777 AAENVVSILDAETQACRLSLQGHT-------KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE--------------- 833 (913)
Q Consensus 777 ~~dg~I~i~D~~t~~~~~~l~~h~-------~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~--------------- 833 (913)
-....-.+||+.+.++...-..|. ..+.++||..|.. +++|+++ .|++|.+.....
T Consensus 263 RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~ 341 (609)
T KOG4227|consen 263 RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMP 341 (609)
T ss_pred hccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCc
Confidence 777777888988755433222232 3477888886654 8899999 999999853210
Q ss_pred -----CceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002519 834 -----GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 834 -----~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~ 873 (913)
...+..+++|...+..+.|++...+|++.+-.+.++||.-
T Consensus 342 ~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 342 SEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred hhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 1234567889999999999999999999999999999964
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.7e-15 Score=169.31 Aligned_cols=230 Identities=17% Similarity=0.191 Sum_probs=162.9
Q ss_pred CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCCCc-eeEEeccCCCCeEEEEEcCC
Q 002519 654 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPN 729 (913)
Q Consensus 654 Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~-~~~~~~~h~~~V~sl~fsp~ 729 (913)
+..|+|||.+... ...+..|...|.+++|+|||+.|++++.+ ..|++||+.++.. .+..+.+| ..+++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999987554 56677888899999999999999988754 3699999987332 23333333 446899999
Q ss_pred CCeEEEEEeCCCcEEEE--EcCCCeeeEEee--CCceEEEEecCCCEEEEEEc-CCeEEEEECCC--CeEEEEecCCCCC
Q 002519 730 KDDLICSCDGDGEIRYW--SINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAET--QACRLSLQGHTKP 802 (913)
Q Consensus 730 ~~~ll~sgs~Dg~I~iw--dl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~-dg~I~i~D~~t--~~~~~~l~~h~~~ 802 (913)
|+.++++.+.+|.+.|| |+.++....... .......|+|++..+++++. ++.+.||++.. +.. ..+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC-
Confidence 99888777778876555 666665443322 23457899999998777664 67777776543 322 222 3333
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC---CCCcEE
Q 002519 803 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM---SENKTM 879 (913)
Q Consensus 803 V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~---~~~~~~ 879 (913)
.++.|+|||++|+..+.+.+.+||+.++... . +.. ......+.|+|+|++|++++.++.+.+|++ ......
T Consensus 336 -~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~-~---lt~-~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDNVVKQDLTSGSTE-V---LSS-TFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred -CCccCCCCCCEEEEEcCCCEEEEECCCCCeE-E---ecC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 4678999999998888787777999876321 1 111 112356789999999999999987776654 344445
Q ss_pred EEcccCCCeEEEEEeCC
Q 002519 880 TLTAHEGLIAALAVSTE 896 (913)
Q Consensus 880 ~~~~h~~~V~~l~~spd 896 (913)
.+..|.+.+..++|+|-
T Consensus 410 ~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EccCCCCCCCCcccCCC
Confidence 77788889999999984
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-15 Score=148.63 Aligned_cols=207 Identities=24% Similarity=0.412 Sum_probs=159.6
Q ss_pred ccceeeeEee-cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-eeEec-----cCCCCeEEEEECC--CCCEEE
Q 002519 621 FSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLE-----EHSSLITDVRFSP--SMPRLA 691 (913)
Q Consensus 621 ~~~~~~~~l~-~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~-~~~l~-----~h~~~V~~l~fsp--dg~~La 691 (913)
.+++.+..+. .+-+.|.||.|.|++..||+-. |..|.+|+++.... +..+. +|....++-+|+| +++.++
T Consensus 110 ~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 110 STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE
Confidence 3566777776 6778999999999999998876 88999999987655 33332 3566788889998 677777
Q ss_pred EEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeeCC---ceEEEEe
Q 002519 692 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGG---TAQMRFQ 767 (913)
Q Consensus 692 sgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~~~---~~~v~~s 767 (913)
+.+ |++++.||+++..+....-..|...|.++.|+|+..++|++|++||.|+|||.+.-+ .+..+.++ +.+++|+
T Consensus 189 tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn 267 (370)
T KOG1007|consen 189 TTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN 267 (370)
T ss_pred EeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec
Confidence 765 889999999985555556667889999999999999999999999999999998654 45555554 4678998
Q ss_pred cCCC-EEEEEEcCCeEEEEECCC-----------------------------CeEEEEecCCCCCeEEEEEcCCCC-EEE
Q 002519 768 PHLG-RYLAAAAENVVSILDAET-----------------------------QACRLSLQGHTKPIDSVCWDPSGE-LLA 816 (913)
Q Consensus 768 ~~~~-~ll~~~~dg~I~i~D~~t-----------------------------~~~~~~l~~h~~~V~sl~~spdg~-~l~ 816 (913)
|... .+++++.|..|.+|.... ...+.++..|++.|++++|+.-.. +|+
T Consensus 268 ~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFA 347 (370)
T KOG1007|consen 268 PEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFA 347 (370)
T ss_pred CccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEE
Confidence 8765 556677788888885321 012335677999999999998766 677
Q ss_pred EEeCC-eEEEEECC
Q 002519 817 SVSED-SVRVWTVG 829 (913)
Q Consensus 817 s~s~d-~I~vwdl~ 829 (913)
+-+.| .+.|=.+.
T Consensus 348 SLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 348 SLSYDGRVIISSVP 361 (370)
T ss_pred EeccCceEEeecCC
Confidence 78888 77776653
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-14 Score=147.62 Aligned_cols=228 Identities=13% Similarity=0.163 Sum_probs=171.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCe
Q 002519 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGS 752 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D--g~I~iwdl~~~~ 752 (913)
...|..+.|+.+...|..|+.|| .++|..+.-+++ .........|..+-|+.. |++..+.+ ..+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~-~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC-FSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh-hcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence 34577788999999999999999 678888763332 222223445666777743 55555444 458999998887
Q ss_pred eeEEee--CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCC---CCCeEEEEEcCCCCEEEEEeC-C--eEE
Q 002519 753 CTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH---TKPIDSVCWDPSGELLASVSE-D--SVR 824 (913)
Q Consensus 753 ~~~~~~--~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h---~~~V~sl~~spdg~~l~s~s~-d--~I~ 824 (913)
.+..+. ..+.++++. .++++++-.+. |+|||+++.+.++++..- ...+..+.+++.+.+++.-+. + .|.
T Consensus 80 ~ICe~~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 666544 444455554 35666655544 999999999999988753 344666666666668876543 2 899
Q ss_pred EEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEcc--cCCCeEEEEEeCCCCEE
Q 002519 825 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTA--HEGLIAALAVSTETGYV 900 (913)
Q Consensus 825 vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~I~iwd~~~~~~~-~~~~--h~~~V~~l~~spdg~~L 900 (913)
|||+.+- ..+..+..|.+.+-+++|+++|.+|++++..| .|+||.+.++..+ .+.. ....|.+++|++++.+|
T Consensus 157 l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999765 77888889999999999999999999999999 6899999999877 3432 24568999999999999
Q ss_pred EEEeCCCcEEEeC
Q 002519 901 ASASHDKFVKLWK 913 (913)
Q Consensus 901 asgs~DG~I~IWd 913 (913)
++.|..++|+||+
T Consensus 234 ~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 234 AASSNTETVHIFK 246 (391)
T ss_pred EEecCCCeEEEEE
Confidence 9999999999996
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-16 Score=166.15 Aligned_cols=262 Identities=18% Similarity=0.282 Sum_probs=209.7
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 714 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~ 714 (913)
.-+.+.|+.+|+.|+.|+..|.|..+|+.+++....+.. ...|.++.|-.+..+||++- ...++|||-. +..+..+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~--GtElHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN--GTELHCL 206 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCC--CcEEeeh
Confidence 467789999999999999999999999999998888764 45699999998888887775 5679999876 5667777
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---CCceEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 002519 715 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 791 (913)
Q Consensus 715 ~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~ 791 (913)
+.| ..|..+.|.|. .+||++++..|.++.-|+.+|+.+..+. +.+..++-.|.+..+-+|...|+|.+|.....+
T Consensus 207 k~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 755 45888999997 5688899999999999999999887765 345667788888888889999999999999999
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 002519 792 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 870 (913)
Q Consensus 792 ~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~i 870 (913)
++..+.+|.++|.+|++.++|.|+++.+.| .++|||++... .+..+.. ......++||..| +++++....|.|
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~---ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~i 358 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY---QLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQI 358 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---ccceeec-CCCcccccccccc--ceeeecCCeeee
Confidence 999999999999999999999999999999 99999998764 3333333 4556677787665 666677778999
Q ss_pred EE-CCCC---cEEEEc--ccCCCeEEEEEeCCCCEEEEEeCCCc
Q 002519 871 WN-MSEN---KTMTLT--AHEGLIAALAVSTETGYVASASHDKF 908 (913)
Q Consensus 871 wd-~~~~---~~~~~~--~h~~~V~~l~~spdg~~Lasgs~DG~ 908 (913)
|. ...+ ....+. ...+.|..+.|.|-..+|..|-..|.
T Consensus 359 w~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 359 WKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred ehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 94 3221 111222 23458999999998777776655543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-13 Score=151.70 Aligned_cols=263 Identities=12% Similarity=0.115 Sum_probs=175.2
Q ss_pred EEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEc
Q 002519 648 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 727 (913)
Q Consensus 648 Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs 727 (913)
+++-..++.|.|.|..+.+.+.++......-..+.|++|++++++++.||.|.++|+.+ .+.+.++... ....+++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~G-~~~~~i~~s 86 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKVG-GNPRGIAVS 86 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE-S-SEEEEEEE-
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEecC-CCcceEEEc
Confidence 34555789999999999999999987655555688999999999999999999999998 6677777643 446789999
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC----------ceEEEEecCCCEEEEEEcC-CeEEEEECCCCeEEE-E
Q 002519 728 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----------TAQMRFQPHLGRYLAAAAE-NVVSILDAETQACRL-S 795 (913)
Q Consensus 728 p~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----------~~~v~~s~~~~~ll~~~~d-g~I~i~D~~t~~~~~-~ 795 (913)
+||+++++++..++.|.++|.++.+.++.+... ...+..++....+++.-.| +.|.+.|....+.+. .
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~ 166 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT 166 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence 999999988889999999999999988876532 2345667777777777665 789999987654332 2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCC----------------------------------------
Q 002519 796 LQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE---------------------------------------- 833 (913)
Q Consensus 796 l~~h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~---------------------------------------- 833 (913)
............|+|+++|++++... .|-++|..++..
T Consensus 167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~i 246 (369)
T PF02239_consen 167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLI 246 (369)
T ss_dssp EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred eecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccc
Confidence 33345667889999999988776433 777777654311
Q ss_pred ------------CceEEEeecCCCceEEEEEeCCCCEEEEE---E-cCCeEEEEECCCCcEEEEcc--cCCCeEEEEEeC
Q 002519 834 ------------GECVHELSCNGNKFHSCVFHPTYPSLLVI---G-CYQSLELWNMSENKTMTLTA--HEGLIAALAVST 895 (913)
Q Consensus 834 ------------~~~i~~~~~~~~~i~~l~~sp~g~~l~s~---s-~dg~I~iwd~~~~~~~~~~~--h~~~V~~l~~sp 895 (913)
.+.+..+...+.. .-+..||+++++++. + ..+.|.|+|..+.+...... ....+..+.|++
T Consensus 247 g~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~ 325 (369)
T PF02239_consen 247 GTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP 325 (369)
T ss_dssp E--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T
T ss_pred cCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC
Confidence 1112222222222 445679999999998 3 34799999999997764332 223599999999
Q ss_pred CCCEEEEEeCC--CcEEEeC
Q 002519 896 ETGYVASASHD--KFVKLWK 913 (913)
Q Consensus 896 dg~~Lasgs~D--G~I~IWd 913 (913)
+|+++..+..| |.|.|||
T Consensus 326 dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 326 DGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp TSSEEEEEEE--TTEEEEEE
T ss_pred CCCEEEEEEecCCCEEEEEE
Confidence 99976655543 3699886
|
... |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=167.87 Aligned_cols=223 Identities=15% Similarity=0.191 Sum_probs=158.7
Q ss_pred eeEeecCCCCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCce--eeEeccCCCCeEEEEECCCCCEEEEEe-CCCeE
Q 002519 626 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSS-FDKTV 699 (913)
Q Consensus 626 ~~~l~~H~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V 699 (913)
...+..|...|.+++|||||+.||.++.+ ..|++||+.+++. +..+.+| ..+++|+|||+.|++++ .+|.+
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcE
Confidence 34566788899999999999999988754 3699999988753 3333333 45789999999888765 58876
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeeCCceEEEEecCCCEEEEEEc
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGGTAQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~~~~~~v~~s~~~~~ll~~~~ 778 (913)
.||.++..+.....+..+...+.++.|+||++.+++++..+|.+.||++.... ....+........|+|++..+++++.
T Consensus 273 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 273 NIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMING 352 (429)
T ss_pred EEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcC
Confidence 66644322334556666777888999999999888777778888888875422 22222221145679999999888777
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCC
Q 002519 779 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 855 (913)
Q Consensus 779 dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~ 855 (913)
++ +.+||+.+++.......+ ...++.|+|+|++|++++.+ .+.+|++... ....+..+..+...+..++|+|-
T Consensus 353 ~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 353 DN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCceEEccCCCCCCCCcccCCC
Confidence 54 566999988755433222 34567899999999988877 7777765321 22566677777777888899885
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=165.09 Aligned_cols=231 Identities=20% Similarity=0.368 Sum_probs=162.7
Q ss_pred ecCCCEEEE--EeCCCcEEEEECCC-CceeeE-ec--cCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcCCCC------
Q 002519 642 SSDGKLLAT--GGHDKKAVLWHTDT-LKSKTN-LE--EHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG------ 708 (913)
Q Consensus 642 spdg~~Las--gs~Dg~V~vwd~~~-~~~~~~-l~--~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~------ 708 (913)
+.+.+++|+ .+..|.|.||++.. |+.... +. .....|+++.|.| |...|+++++||.|+||.+..++
T Consensus 588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~ 667 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM 667 (1012)
T ss_pred eeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC
Confidence 344556665 45678999999973 332211 11 2456799999998 56799999999999999998644
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002519 709 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE 788 (913)
Q Consensus 709 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~ 788 (913)
.....++.|...|++|.|+|-...+|++++.|.+|++||+.+.+.
T Consensus 668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~----------------------------------- 712 (1012)
T KOG1445|consen 668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL----------------------------------- 712 (1012)
T ss_pred CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-----------------------------------
Confidence 335677889999999999998777888888888888888876543
Q ss_pred CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeec-CCCceEEEEEeCCCCEEEEEEcCC
Q 002519 789 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQ 866 (913)
Q Consensus 789 t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg 866 (913)
...+.+|.+.|.+++|+|+|+.+++.+.| +|+||.-++++. .+.+-++ .+..--.+.|.-+|+++++.+.|.
T Consensus 713 ----~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~--pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 713 ----YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ--PVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred ----hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC--ccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 33566799999999999999999999999 999999987643 2332222 123345678888999999998875
Q ss_pred ----eEEEEECCCCcE--E-E-EcccCCCeEEEEEeCCCC-EEEEEeCCCcEEEeC
Q 002519 867 ----SLELWNMSENKT--M-T-LTAHEGLIAALAVSTETG-YVASASHDKFVKLWK 913 (913)
Q Consensus 867 ----~I~iwd~~~~~~--~-~-~~~h~~~V~~l~~spdg~-~Lasgs~DG~I~IWd 913 (913)
.|.+||..+-.. + + .....-.+.--.+.+|.. ++++|-.|..|++|+
T Consensus 787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 787 SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence 688888654331 1 1 111111111123345554 456676788888773
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.1e-14 Score=145.27 Aligned_cols=276 Identities=16% Similarity=0.264 Sum_probs=190.1
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCeEEEEECCCC-CEEEEEeCCCeEEEEEcCCCCce
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYS 710 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-h~~~V~~l~fspdg-~~Lasgs~Dg~V~Iwdl~~~~~~ 710 (913)
+-.+..++|++.-..+|++..|-.|+|||-.. ++...++. -...|+|++|.|.+ +.|+.|+..| |.||..+.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34678899999777889999999999999776 55555553 34679999999975 4677777665 999988642211
Q ss_pred -------------eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---eCCceEEEEecCCCEEE
Q 002519 711 -------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYL 774 (913)
Q Consensus 711 -------------~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~s~~~~~ll 774 (913)
+....+| ..|+++.|.+||..++-+.-.|..|.|||..++.++... .++..-+.|+|++.+++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 2223345 789999999998877755556889999999999877654 24567899999999999
Q ss_pred EEEcCCeEEEE-ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCC------------ceEEEee
Q 002519 775 AAAAENVVSIL-DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG------------ECVHELS 841 (913)
Q Consensus 775 ~~~~dg~I~i~-D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~------------~~i~~~~ 841 (913)
++.-|+..++| ..++..+..-..+ .+.|...+|+|+|++|+..+.+.-++|.+....+. ..+..+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred Eecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 99999999999 4444444433333 34899999999999777666664455554321110 0111110
Q ss_pred -----c----CCCceEEEEEeCCCCEEEEEEcCC--------eEEEEECCCCcEEEEc--c--cCCCeEEEEEeC---CC
Q 002519 842 -----C----NGNKFHSCVFHPTYPSLLVIGCYQ--------SLELWNMSENKTMTLT--A--HEGLIAALAVST---ET 897 (913)
Q Consensus 842 -----~----~~~~i~~l~~sp~g~~l~s~s~dg--------~I~iwd~~~~~~~~~~--~--h~~~V~~l~~sp---dg 897 (913)
. ..+.+.+++|.|.|.++++.-..+ .|.+||......+.+. + ....-..++|+| ++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 1 145688999999999999986543 4677887766555332 1 111234455554 45
Q ss_pred CEEEEEeCCCcEEEe
Q 002519 898 GYVASASHDKFVKLW 912 (913)
Q Consensus 898 ~~Lasgs~DG~I~IW 912 (913)
.+|..|=..|.|.-|
T Consensus 414 ~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRY 428 (445)
T ss_pred cEEEEEeccCceEee
Confidence 566666666766544
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-13 Score=142.05 Aligned_cols=269 Identities=14% Similarity=0.217 Sum_probs=195.5
Q ss_pred CCEEEEEEecCCCEEEE-EeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCE-EEEEeCCCeEEEEEcCCCCcee
Q 002519 634 SKVICCHFSSDGKLLAT-GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 634 ~~V~~l~fspdg~~Las-gs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
+.|.-|.|..|..++++ ...|+.|.+|++...+-...+......+.+++|+|||+. |.+...|-.|.||.+.+.. .
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~ 126 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--G 126 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--e
Confidence 46777888888766555 456889999999988888888888899999999999965 5566679999999998733 2
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEe-----------------------------------CCCcEEEEEcCCCeeeEE
Q 002519 712 RTFMGHSASVMSLDFHPNKDDLICSCD-----------------------------------GDGEIRYWSINNGSCTRV 756 (913)
Q Consensus 712 ~~~~~h~~~V~sl~fsp~~~~ll~sgs-----------------------------------~Dg~I~iwdl~~~~~~~~ 756 (913)
..+.-.+..+..++|++||....+..- ++..+.+||.--.-.+..
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 223333455677888888775432211 123344555332222222
Q ss_pred ee--CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE----------------------------------------
Q 002519 757 FK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL---------------------------------------- 794 (913)
Q Consensus 757 ~~--~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~---------------------------------------- 794 (913)
++ .++..+.|+|.+..+++|+.|+.++|.+--+.+...
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 22 366788999999999999999988876533221111
Q ss_pred --------------------Eec------CCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCCceEEEeecCCC
Q 002519 795 --------------------SLQ------GHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGN 845 (913)
Q Consensus 795 --------------------~l~------~h~~~V~sl~~spdg~~l~s~s~d---~I~vwdl~~~~~~~~i~~~~~~~~ 845 (913)
.++ ...-.+.-++|++|..++++-.+. .+-+||++..+ ++.+-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~----l~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK----LHAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh----hhhhhhhcc
Confidence 000 011235568999999999998877 78999997642 233333467
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCc
Q 002519 846 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 908 (913)
Q Consensus 846 ~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~ 908 (913)
+|....|+|....++++.....+++|......++......-.|..+.|.-+|..++.++.|..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999999999999999999999999888877777789999999999999999998853
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-13 Score=158.12 Aligned_cols=278 Identities=23% Similarity=0.257 Sum_probs=199.0
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC---EEEEEeCCCeEEEEEcCCC
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP---RLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~---~Lasgs~Dg~V~Iwdl~~~ 707 (913)
+....-..-.||+|+++|+... +..|.||.+.++.+++.+++|..+++.+.+.|... ++++++.||+|++||...
T Consensus 14 g~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~- 91 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD- 91 (792)
T ss_pred cccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC-
Confidence 3333334456899999888775 56899999999999999999999999999987644 678999999999999987
Q ss_pred CceeEEeccCCCCeEEEEEcCC---CCeEEEEEeCCC------------cEEEEEcCCCeee-EEe-eCC--ceEEEEec
Q 002519 708 GYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDG------------EIRYWSINNGSCT-RVF-KGG--TAQMRFQP 768 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~---~~~ll~sgs~Dg------------~I~iwdl~~~~~~-~~~-~~~--~~~v~~s~ 768 (913)
+..++++..+ ..|..+.+.|. ..-.+..+..|. .++-+.+.+.... ..+ +.. ...+.+.+
T Consensus 92 ~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~ 170 (792)
T KOG1963|consen 92 GELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN 170 (792)
T ss_pred cEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence 6667766533 33444444221 111111222121 1111222111000 000 111 23455554
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEE----ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC-CCCCceEEEeec
Q 002519 769 HLGRYLAAAAENVVSILDAETQACRLS----LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS-GSEGECVHELSC 842 (913)
Q Consensus 769 ~~~~ll~~~~dg~I~i~D~~t~~~~~~----l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~-~~~~~~i~~~~~ 842 (913)
. +.+.....+..+.+|+..+...... -..|...+++.+++|++++++++..| .|.+|.--. .........+.-
T Consensus 171 ~-ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 171 S-GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred C-ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 4 5555566677788888877541111 12366678999999999999999998 999996533 334455667778
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 843 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 843 ~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
|...|.+++|+++|.+|++||..+.+.+|.+.+++...++.-.++|..+.++||+.+.+....|..|.+-
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 8999999999999999999999999999999999977888899999999999999999999999998874
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=155.84 Aligned_cols=242 Identities=15% Similarity=0.190 Sum_probs=164.1
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCce----eeEeccCCCCeEEEEE-----CCCCCEEEEEeCCCeEEEEEcC
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRF-----SPSMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~----~~~l~~h~~~V~~l~f-----spdg~~Lasgs~Dg~V~Iwdl~ 705 (913)
.++...++-.|++|+..- ...++||+...+.. +....-.....+|-+| .+++--|+.|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 455555666677776643 34688888763221 1111111223344445 3456678888888889998876
Q ss_pred CCCceeEEec----cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEE--EecCCCEEEEEEcC
Q 002519 706 NPGYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR--FQPHLGRYLAAAAE 779 (913)
Q Consensus 706 ~~~~~~~~~~----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~--~s~~~~~ll~~~~d 779 (913)
. ....+.+. -....|+||.|-|.++.+|+++-.+|.+++||.+. ........ ..+++..+......
T Consensus 204 ~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 N-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred h-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence 5 22222111 23478999999999999998999999999999721 11111111 22233333221110
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCE
Q 002519 780 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 858 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~ 858 (913)
...+..++..+..-...|+.++|+|||++||+.+.| .+||||+.+. +.+..++..-+...||+|+|||++
T Consensus 276 ------sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 276 ------SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred ------ccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence 111113344443345689999999999999999999 9999999765 455555555778999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 002519 859 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 894 (913)
Q Consensus 859 l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 894 (913)
|++|+.|..|.||.+.+++++ .-.+|.++|..|+|+
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999998 567999999999998
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-15 Score=155.97 Aligned_cols=191 Identities=23% Similarity=0.276 Sum_probs=152.5
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEec-
Q 002519 637 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM- 715 (913)
Q Consensus 637 ~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~- 715 (913)
.+++|+.+|..|++|+.||++|||++.....+.....|...|.++.|+||++.|++.+.| ..+||+++++ ..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhcCC
Confidence 789999999999999999999999999888888889999999999999999999999999 8999999984 3333332
Q ss_pred -cCCCCeEEEEEcCCC---Ce-EEEEEeCCCcEEEEEcCCCee---eE---Ee--eCCceEEEEecCCCEEEEEEcCCeE
Q 002519 716 -GHSASVMSLDFHPNK---DD-LICSCDGDGEIRYWSINNGSC---TR---VF--KGGTAQMRFQPHLGRYLAAAAENVV 782 (913)
Q Consensus 716 -~h~~~V~sl~fsp~~---~~-ll~sgs~Dg~I~iwdl~~~~~---~~---~~--~~~~~~v~~s~~~~~ll~~~~dg~I 782 (913)
..+..+..+.|..++ .. +++....-+.|+.||+...+. .+ .. ...+++++++.+|+.+++++.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 334456667787765 22 333334456677777654322 11 11 2367889999999999999999999
Q ss_pred EEEECCCCeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 002519 783 SILDAETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 829 (913)
Q Consensus 783 ~i~D~~t~~~~~~l~-~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~ 829 (913)
.||+..+.+++..++ .|...|+.+.|+||.+++++.+.+ ++.|..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 999999987776654 699999999999999999998888 77777664
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-13 Score=155.52 Aligned_cols=233 Identities=14% Similarity=0.142 Sum_probs=167.2
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCC
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 731 (913)
Q Consensus 655 g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 731 (913)
..|.+||.+... ...+..+...+.+.+|+|||+.|+..+. +..|++||+.+ +.. +.+......+..+.|+|||+
T Consensus 179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~~-~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAV-RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CCe-EEccCCCCCcCCeEECCCCC
Confidence 478899987554 3445556778999999999999987653 45799999986 332 22222333455689999999
Q ss_pred eEEEEEeCCC--cEEEEEcCCCeeeEEeeC--CceEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCeE
Q 002519 732 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPID 804 (913)
Q Consensus 732 ~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~ 804 (913)
.++++.+.+| .|++||+.+++....... ......|+|++..+++++.+ + .|+++|+.+++.. .+..+...+.
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766665 489999998876554433 34678899999988877764 3 5666677776543 3333444566
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 002519 805 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 877 (913)
Q Consensus 805 sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~I~iwd~~~~~ 877 (913)
..+|+|||++|+..+.+ .|.+||+.++.. . .+.. ........|+|||++|+.++.++ .++++++....
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~---~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-Q---VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe-E---EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 78999999988776543 588999976632 2 2221 22234678999999999999876 47888997777
Q ss_pred EEEEcccCCCeEEEEEeCC
Q 002519 878 TMTLTAHEGLIAALAVSTE 896 (913)
Q Consensus 878 ~~~~~~h~~~V~~l~~spd 896 (913)
...+..|.+.+...+|+|-
T Consensus 410 ~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 410 KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred eEECccCCCCcCCcccCCC
Confidence 7788889999999999873
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=150.30 Aligned_cols=275 Identities=14% Similarity=0.160 Sum_probs=205.3
Q ss_pred cCCCCEEEEEEecCCCEE-EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Q 002519 631 ASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 709 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 709 (913)
+|....+.|..+|||.|| |+|.+--.|++||+........-......|.-+.++.|-..++.-..|.+|-+..-.. .
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G--~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--R 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC--e
Confidence 367778899999999865 5677788999999997766655555556677777787877788888888887765432 1
Q ss_pred eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---CCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002519 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 710 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~s~~~~~ll~~~~dg~I~i~D 786 (913)
-.. + .-.....+++++.-.-.++ .++....|+-++++.|..+..|. +.++++..++..+.+++|+.+|.|..||
T Consensus 127 hy~-~-RIP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 127 HYR-T-RIPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eee-e-ecCcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 111 1 1223345567665544566 45556789999999999888775 4567788889889999999999999999
Q ss_pred CCCCeEEEEecC------CCC-----CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeC
Q 002519 787 AETQACRLSLQG------HTK-----PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 854 (913)
Q Consensus 787 ~~t~~~~~~l~~------h~~-----~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp 854 (913)
.++...+.++.. |.. .|+++.|+.+|-.+++|... .|.|||+++... .+..-.....+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccCCccceeeecccc
Confidence 998766655542 222 49999999999999999888 999999997632 2222233456788888877
Q ss_pred CCCE-EEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 855 TYPS-LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 855 ~g~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
.+.. .++......++|||-.+++.+........|+.+|+-|++.++++|.+++.+..|
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 6332 334444568999999999999887777889999999999999999988876644
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-13 Score=145.29 Aligned_cols=238 Identities=15% Similarity=0.167 Sum_probs=156.4
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
.+...+.+++|...|+.++|++|+.++++++.|..+++||+..|..+..+..|...|..++|.|-+.++++-+.|...++
T Consensus 112 ~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~ 191 (434)
T KOG1009|consen 112 KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEG 191 (434)
T ss_pred ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccce
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999987777
Q ss_pred EEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEc---
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA--- 778 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~--- 778 (913)
+++.... .+.... + ..+..-.+.+. .....++|.-++.+ .-...++|+|++..+++.+.
T Consensus 192 ~~~~~~~-~~~~~~-~-~~m~~~~~~~~---------e~~s~rLfhDeTlk------sFFrRlsfTPdG~llvtPag~~~ 253 (434)
T KOG1009|consen 192 FSAKLKQ-VIKRHG-L-DIMPAKAFNER---------EGKSTRLFHDETLK------SFFRRLSFTPDGSLLVTPAGLFK 253 (434)
T ss_pred eeeeeee-eeeeee-e-eEeeecccCCC---------CcceeeeeecCchh------hhhhhcccCCCCcEEEcccceee
Confidence 7775411 111110 0 00000111110 01112222222111 11123445555555544322
Q ss_pred -C-----CeEEEEECCCC-eEEEEecCCCCCeEEEEEcC------------------CCCEEEEEeCCeEEEEECCCCCC
Q 002519 779 -E-----NVVSILDAETQ-ACRLSLQGHTKPIDSVCWDP------------------SGELLASVSEDSVRVWTVGSGSE 833 (913)
Q Consensus 779 -d-----g~I~i~D~~t~-~~~~~l~~h~~~V~sl~~sp------------------dg~~l~s~s~d~I~vwdl~~~~~ 833 (913)
. +..++|+.... ++...+.+...++..+.|+| .+-.+++++.+.|+|||..+...
T Consensus 254 ~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P 333 (434)
T KOG1009|consen 254 VGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEP 333 (434)
T ss_pred eCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccc
Confidence 1 12344433321 33444444444444444433 34568888899999999977644
Q ss_pred CceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002519 834 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 834 ~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 879 (913)
..++. ..|...|+.++|+++|..+++.+.||...+..+...++-
T Consensus 334 ~~~v~--nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 334 LAVVD--NIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eEEEe--eeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 33333 346788999999999999999999997777766655443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-13 Score=140.20 Aligned_cols=234 Identities=17% Similarity=0.305 Sum_probs=179.5
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC--ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEc
Q 002519 671 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 748 (913)
Q Consensus 671 l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl 748 (913)
+..-..+|+|.+|++|...+|++.....|.||...... +...++..|...|++|+|.|..++++ +|+.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCcccccc
Confidence 33456789999999999999999999999999987644 56788999999999999999987765 9999999999999
Q ss_pred C-CCe-----eeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeE----EEEecCCCCCeEEEEEcCCCCEEEEE
Q 002519 749 N-NGS-----CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASV 818 (913)
Q Consensus 749 ~-~~~-----~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~----~~~l~~h~~~V~sl~~spdg~~l~s~ 818 (913)
. .++ .+..++....++.|+|.+++|++++....|.||-.+...- .+.-+.++..|+++.|+|++-+|++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4 443 2345667889999999999999999999998887765421 22233467889999999999999999
Q ss_pred eCC-eEEEEEC-----CCCC----------CCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--EEE
Q 002519 819 SED-SVRVWTV-----GSGS----------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--TMT 880 (913)
Q Consensus 819 s~d-~I~vwdl-----~~~~----------~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~--~~~ 880 (913)
+.| ..+||.. +... ....+.++....+.+..+.|+|+|..|+..+.|..|.+-|..... ...
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 999 8888864 1110 112334444567889999999999999999999999999987764 333
Q ss_pred EcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 881 LTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 881 ~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
+....-+..++.|-.+.. ++.+++|
T Consensus 245 ~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred hhhccCCceeeEeecCCc-eeecCCC
Confidence 333336666776654432 3334444
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-14 Score=154.05 Aligned_cols=205 Identities=16% Similarity=0.211 Sum_probs=164.4
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEE
Q 002519 646 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 725 (913)
Q Consensus 646 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~ 725 (913)
..|+.++.||++.|.+ +.++..+.+..|.+.|.|-+|+|||.-|+++++||.|+||.-. +....++......|+|++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHHHhhcCceeEEEE
Confidence 4778888899999887 4678888999999999999999999999999999999999875 344444555678899999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC
Q 002519 726 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP 802 (913)
Q Consensus 726 fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~ 802 (913)
|.|+.+.++++.+ +.|.|=.+.....+-..+ +-+.++.|++..+.+++++.|-..+|||.. |..++.-..|+.+
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 9999988886654 455555555443333333 345678899999999999999999999975 5566667779999
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002519 803 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 871 (913)
Q Consensus 803 V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iw 871 (913)
|++++|.|+ +.++.++..++++=..+ .+.|..++|++||..+++|+..|.|.+=
T Consensus 230 ITSva~npd-~~~~v~S~nt~R~~~p~--------------~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYNTARFSSPR--------------VGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeeccc-cceeeeeeeeeeecCCC--------------ccceEEEEEcCCCceeeccccCceEEEe
Confidence 999999999 77888888877733332 5678899999999999999999866543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-12 Score=151.79 Aligned_cols=232 Identities=17% Similarity=0.239 Sum_probs=166.2
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCC
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 731 (913)
Q Consensus 655 g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 731 (913)
..|++||.+. ...+.+..|...|.+.+|+|||+.|+..+. +..|++||+.+ +. ...+..+...+.+.+|+|||+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~-~~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQ-RELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-Cc-EEEeecCCCcccCcEECCCCC
Confidence 4788888754 455667778889999999999999988764 46899999987 33 234445666778899999999
Q ss_pred eEEEEEeCCCc--EEEEEcCCCeeeEEeeC--CceEEEEecCCCEEEEEEc-C--CeEEEEECCCCeEEEEecCCCCCeE
Q 002519 732 DLICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPID 804 (913)
Q Consensus 732 ~ll~sgs~Dg~--I~iwdl~~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~-d--g~I~i~D~~t~~~~~~l~~h~~~V~ 804 (913)
.++++.+.++. |++||+.++........ ......|+|++..++.++. + ..|+++|+.+++... +..+...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 98878777665 77789888766543322 2456889999998887764 3 368888987765443 333445567
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC------CeEEEEECC
Q 002519 805 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY------QSLELWNMS 874 (913)
Q Consensus 805 sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d------g~I~iwd~~ 874 (913)
...|+|+|++|+..+.+ .|.+||+..+. ...+.. ...+....|+|||+.|+..+.+ ..|+++|+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 78999999988876543 68888875432 122222 2346778999999998887653 268888988
Q ss_pred CCcEEEEcccCCCeEEEEEeCC
Q 002519 875 ENKTMTLTAHEGLIAALAVSTE 896 (913)
Q Consensus 875 ~~~~~~~~~h~~~V~~l~~spd 896 (913)
.+....+. ..+.+...+|+|-
T Consensus 413 g~~~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 413 GRNEREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCceEEcc-CCCCccCcccCCC
Confidence 77665544 3555777788763
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.4e-13 Score=153.67 Aligned_cols=232 Identities=17% Similarity=0.151 Sum_probs=165.4
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCC
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 731 (913)
Q Consensus 655 g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 731 (913)
..|.|||.+. ...+.+..+...+.+.+|+||++.|+.++.+ ..|++||+.+ +.. ..+........++.|+|+|+
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~-~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQR-ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCE-EEeccCCCCccCceECCCCC
Confidence 4688999864 4455666777889999999999999988753 4699999986 332 23333445556789999999
Q ss_pred eEEEEEeCCC--cEEEEEcCCCeeeEEeeC--CceEEEEecCCCEEEEEEc-CC--eEEEEECCCCeEEEEecCCCCCeE
Q 002519 732 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHTKPID 804 (913)
Q Consensus 732 ~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~-dg--~I~i~D~~t~~~~~~l~~h~~~V~ 804 (913)
.++++.+.+| .|++||+.+++....... .....+|++++..+++++. ++ .|+++|+.+++.... ..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecCCCCcc
Confidence 8887777666 599999998875543322 2356889999998888765 34 477778877654332 22334455
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCc
Q 002519 805 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENK 877 (913)
Q Consensus 805 sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~~~ 877 (913)
.++|+|+|++|+..+.+ .|.+||+.++.. . .+.. ......+.|+|+|++|+..+.+ ..|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~-~---~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV-R---TLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe-E---ECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 78999999988776432 699999976532 1 2222 2234567899999998888764 378888997766
Q ss_pred EEEEcccCCCeEEEEEeC
Q 002519 878 TMTLTAHEGLIAALAVST 895 (913)
Q Consensus 878 ~~~~~~h~~~V~~l~~sp 895 (913)
...+..+.+.+...+|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666666777788888876
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-12 Score=143.68 Aligned_cols=268 Identities=17% Similarity=0.273 Sum_probs=187.5
Q ss_pred CEEEEEEecCCCEEEEE-----eC-----CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 002519 635 KVICCHFSSDGKLLATG-----GH-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasg-----s~-----Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
.++++.|||.|.+|.+= .. ...+.+|+++++.....+..-...-+++.|+.|..+.+- -..+.|.+|++
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhh-hhcceEEEEec
Confidence 89999999999999862 11 235779999996666555543333378999988754332 22456999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCC-eEEEE-----EeCCCcEEEEEcCCCe------eeEEeeCCceEEEEecCCCE
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKD-DLICS-----CDGDGEIRYWSINNGS------CTRVFKGGTAQMRFQPHLGR 772 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~V~sl~fsp~~~-~ll~s-----gs~Dg~I~iwdl~~~~------~~~~~~~~~~~v~~s~~~~~ 772 (913)
.+....... -|...|..+.++|... ..+|+ .+.-+.|+||.+.... +..-|+.....+.|...+.-
T Consensus 154 ~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 154 GSFKTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA 231 (566)
T ss_pred CCccceeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence 873333333 3577899999999733 33332 3445779999887332 22334556667888888765
Q ss_pred EEEE-Ec-----------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE-eCC--eEEEEECCCCCCCceE
Q 002519 773 YLAA-AA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-SED--SVRVWTVGSGSEGECV 837 (913)
Q Consensus 773 ll~~-~~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~-s~d--~I~vwdl~~~~~~~~i 837 (913)
|++. .. +..++++++....++..+. ..++|++++|+++++-|+++ +.- .+.|||++. ..
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----~~- 305 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----KP- 305 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC----CE-
Confidence 4443 22 2378888888555655554 57899999999999855444 333 899999953 23
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC------CCc
Q 002519 838 HELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH------DKF 908 (913)
Q Consensus 838 ~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~------DG~ 908 (913)
.+....++-+++-|+|.|++|+.+|.+ |.|.|||+.+.+++...... .-+-+.|+|||.+|+|+.. |+.
T Consensus 306 -v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg 383 (566)
T KOG2315|consen 306 -VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNG 383 (566)
T ss_pred -eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC-CceEEEEcCCCcEEEEEeccccEEecCC
Confidence 334447788899999999999999987 69999999997777333222 2345689999999998874 677
Q ss_pred EEEeC
Q 002519 909 VKLWK 913 (913)
Q Consensus 909 I~IWd 913 (913)
|+||+
T Consensus 384 ~Kiwh 388 (566)
T KOG2315|consen 384 IKIWH 388 (566)
T ss_pred eEEEE
Confidence 88985
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-13 Score=143.17 Aligned_cols=261 Identities=13% Similarity=0.186 Sum_probs=196.9
Q ss_pred cCCCCEEEEEEecCCC--EEEEEeCCCcEEEEECCCCceeeE------eccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002519 631 ASTSKVICCHFSSDGK--LLATGGHDKKAVLWHTDTLKSKTN------LEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 702 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~--~Lasgs~Dg~V~vwd~~~~~~~~~------l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 702 (913)
.-...|..++|.-|+. .|...+.|..+..+++........ .......|..++.. +..|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 3456788888876653 555555677788887776554443 33455667776654 3378888889999999
Q ss_pred EcCCCC---ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCeeeEEeeC------------CceEEE
Q 002519 703 DADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRVFKG------------GTAQMR 765 (913)
Q Consensus 703 dl~~~~---~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D--g~I~iwdl~~~~~~~~~~~------------~~~~v~ 765 (913)
.++.+. ..+..+..+ ..+..+.-++...+++++|+.. ..+.|||++..+.+..-+. -...+.
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 998432 223333323 5577788888888899999999 8999999998865544322 134577
Q ss_pred EecC--CCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEee
Q 002519 766 FQPH--LGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 841 (913)
Q Consensus 766 ~s~~--~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~ 841 (913)
|.+. ...|++++.-+.|++||.+.+ +++..|..-+.+|+++...|++++|+++... .+..||++.+... ...+.
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~--g~~~k 287 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL--GCGLK 287 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee--ccccC
Confidence 8777 678999999999999999987 6888888888999999999999999999888 9999999987322 23366
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCC
Q 002519 842 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE 896 (913)
Q Consensus 842 ~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd 896 (913)
+-.+.|+++..+|..+++++++-|..|+|+|+.+.+++.-......+++|.+.++
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 6688899999999999999999999999999999776644444556666666543
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-13 Score=138.48 Aligned_cols=271 Identities=18% Similarity=0.198 Sum_probs=188.9
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEEcCCCCceeEEecc
Q 002519 638 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMG 716 (913)
Q Consensus 638 ~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~Iwdl~~~~~~~~~~~~ 716 (913)
-++|||+|+++|+.+.- .+.|-|.++.+....+.. -..|.-|.|..|..+++++ ..|+.|.+|++... +-...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEecc
Confidence 46899999999999855 788888888765554433 4567889999888877666 55889999999873 33455566
Q ss_pred CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE--eeCCceEEEEecCCCEEEEEEc----------------
Q 002519 717 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAA---------------- 778 (913)
Q Consensus 717 h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~~~~~~~v~~s~~~~~ll~~~~---------------- 778 (913)
....+.+++|+|||++++.+...|-.|.+|.+.+.++... .+.....++|++++.+.+.++.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 7788999999999999999999999999999998765432 2334455666666554433332
Q ss_pred --------------------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-----
Q 002519 779 --------------------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS----- 832 (913)
Q Consensus 779 --------------------dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~----- 832 (913)
++.+.+||.--.-.+..+. -.-.+..++|+|.+.+|++|+.| .+||.+--+-+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 1123334322211111111 12457889999999999999999 77764411100
Q ss_pred ------------------------------------------C----------CceEEEee------cCCCceEEEEEeC
Q 002519 833 ------------------------------------------E----------GECVHELS------CNGNKFHSCVFHP 854 (913)
Q Consensus 833 ------------------------------------------~----------~~~i~~~~------~~~~~i~~l~~sp 854 (913)
. ...+..++ .....+..++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 0 00011111 1122356789999
Q ss_pred CCCEEEEEEcC--CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 855 TYPSLLVIGCY--QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 855 ~g~~l~s~s~d--g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
|..++++-... +.+.+||+...++..+.....+|....|+|....|+.+.....+++|
T Consensus 329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred CceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence 99887776554 58999999999888777788899999999999888888777778888
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.7e-13 Score=155.05 Aligned_cols=252 Identities=20% Similarity=0.307 Sum_probs=188.5
Q ss_pred CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccC---CCCeEEEEEcC-C
Q 002519 654 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH---SASVMSLDFHP-N 729 (913)
Q Consensus 654 Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h---~~~V~sl~fsp-~ 729 (913)
+..|..||.... .+....-..+.|+|-...|+++.....|+|||.+. +..+..|..+ ...|+.+++.. +
T Consensus 1049 t~~i~~W~~~~~------~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~-~~~l~~F~n~~~~~t~Vs~l~liNe~ 1121 (1387)
T KOG1517|consen 1049 TNPIGNWDQKFM------TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEK-GRLLNGFDNGAFPDTRVSDLELINEQ 1121 (1387)
T ss_pred cccccchHHHHH------hcCCCCCceeeecCCCceeEEcCCcceEEEEeccc-CceeccccCCCCCCCccceeeeeccc
Confidence 345778875421 12222556778889888999999888999999987 6666666543 45788888754 3
Q ss_pred CCeEEEEEeCCCcEEEEEcCC-----CeeeEEee----------CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE
Q 002519 730 KDDLICSCDGDGEIRYWSINN-----GSCTRVFK----------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL 794 (913)
Q Consensus 730 ~~~ll~sgs~Dg~I~iwdl~~-----~~~~~~~~----------~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~ 794 (913)
+..++++|+.||.||||+--. .+.+..+. +...-+.|.-..+++++++.-..|+|||.....++.
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 455778999999999997432 22332221 111335677778999999989999999999988877
Q ss_pred EecC-CCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCc--eEEEEEeCCCC-EEEEEEcCCeE
Q 002519 795 SLQG-HTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPTYP-SLLVIGCYQSL 868 (913)
Q Consensus 795 ~l~~-h~~~V~sl~~sp-dg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~--i~~l~~sp~g~-~l~s~s~dg~I 868 (913)
.+.. ....|+++.-+- .|+.|++|..| .|++||.+.......+...+.|... |..+.+.+.|- .|++|+.+|.|
T Consensus 1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeE
Confidence 7654 344577665443 46899999999 9999999987766677777777776 99999988654 59999999999
Q ss_pred EEEECCCCcEE---EEcccC--C-CeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 869 ELWNMSENKTM---TLTAHE--G-LIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 869 ~iwd~~~~~~~---~~~~h~--~-~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
++||++..... .+..|. + .++++..+++..+||+|+. +.|+||+
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence 99999884322 444443 3 5999999999999999998 9999996
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.1e-15 Score=166.10 Aligned_cols=244 Identities=20% Similarity=0.242 Sum_probs=186.2
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 701 (913)
+-.+....+||.+.|+.++.+.+..++|+++.|..|+||.+.++..+..+.+|++.|++|+|+|-. +.+.||++++
T Consensus 221 t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~ 296 (1113)
T KOG0644|consen 221 TARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRI 296 (1113)
T ss_pred chhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEe
Confidence 345777899999999999999999999999999999999999999999999999999999999964 7788999999
Q ss_pred EEcCCCCceeEEe----c-cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCC-CEEEE
Q 002519 702 WDADNPGYSLRTF----M-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL-GRYLA 775 (913)
Q Consensus 702 wdl~~~~~~~~~~----~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~-~~ll~ 775 (913)
||.+- ..+... + ....-+.++-|...+..++ +++.|+.-..|.+....+.... ..-+.++.+. ...++
T Consensus 297 wd~r~--~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~-Tgs~d~ea~n~e~~~l~~~~~~---lif~t~ssd~~~~~~~ 370 (1113)
T KOG0644|consen 297 WDARL--EPRIYVPRPLKFTEKDLVDSILFENNGDRFL-TGSRDGEARNHEFEQLAWRSNL---LIFVTRSSDLSSIVVT 370 (1113)
T ss_pred ccccc--cccccCCCCCCcccccceeeeeccccccccc-cccCCcccccchhhHhhhhccc---eEEEecccccccccee
Confidence 99972 111110 1 1234566677776666554 9999999999887643322111 0011111121 34455
Q ss_pred EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEe
Q 002519 776 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 853 (913)
Q Consensus 776 ~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~s 853 (913)
+-.+-.+.+|++.++...+.+.+|...+..+.++|-.. +..+++.| ...|||+-.+.. ++........+..+.|+
T Consensus 371 ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p---ik~y~~gh~kl~d~kFS 447 (1113)
T KOG0644|consen 371 ARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP---IKHYFIGHGKLVDGKFS 447 (1113)
T ss_pred eeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc---ceeeecccceeeccccC
Confidence 55677899999999999999999999999999999665 55567777 999999977643 33333336778889999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcE
Q 002519 854 PTYPSLLVIGCYQSLELWNMSENKT 878 (913)
Q Consensus 854 p~g~~l~s~s~dg~I~iwd~~~~~~ 878 (913)
++|..++....-|.++|+....++.
T Consensus 448 qdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 448 QDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred CCCceEecCCCCCceEEeccCCCcc
Confidence 9999999988889999998766543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5e-13 Score=142.37 Aligned_cols=266 Identities=18% Similarity=0.211 Sum_probs=175.5
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEEcCCCCce
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDADNPGYS 710 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwdl~~~~~~ 710 (913)
.-+|+|+.|-+...+|+.|+.+.. -+++ ..++-...++.+.+++. ++..+ ..|.+.|++.....
T Consensus 13 g~PiYa~~~i~s~~llvagggg~~-----~~~~------~~n~vssl~~~~~~g~~~~~~~~~---~~i~~~~~d~~~ts 78 (398)
T KOG0771|consen 13 GFPIYAAKWINSRHLLVAGGGGQA-----AKTG------IGNSVSSLHLVLTGGGGKGRSGIS---SEIHIFDTDDMPTS 78 (398)
T ss_pred CCceEEEEeeCCCceEEEeccCcc-----cccC------CCCcceeEEEEecCCCcccccccc---eeeEeeecCCcchh
Confidence 347999999999988888776543 0111 11111123344444322 11111 12444444321100
Q ss_pred -------eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeE----------EeeCCceEEEEecCCCE
Q 002519 711 -------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTR----------VFKGGTAQMRFQPHLGR 772 (913)
Q Consensus 711 -------~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~----------~~~~~~~~v~~s~~~~~ 772 (913)
+...............+|.++..++....++...-|..-... +.. ...+....++|+.++..
T Consensus 79 ls~~~~~~~~vG~~~~~~~~~~~h~~~~~~~~k~~~~~~~~~~e~~~~~d~~~~~~a~v~~~l~~~g~~k~vaf~~~gs~ 158 (398)
T KOG0771|consen 79 LSESPGGIILVGCDDGAPYRESVHPNGNGRARKLPSGCECFHFEFVASSDFNAETAANVYQKLVDFGQQKVVAFNGDGSK 158 (398)
T ss_pred hccCcCCeeEeccCCCcchhhhccccCCeeeeecCCcccccccccccccccchhhhhhHhHHHhhcCcceEEEEcCCCCE
Confidence 011111111233344566666666555555544444433221 110 11223467999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCC------------------
Q 002519 773 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG------------------ 834 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~------------------ 834 (913)
+.+++.||++|||+......+..+..|...|.++.|+|||++|++.+.|..+||+++++...
T Consensus 159 latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~ 238 (398)
T KOG0771|consen 159 LATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFS 238 (398)
T ss_pred eeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhceec
Confidence 99999999999999888888888888999999999999999999999999999999876100
Q ss_pred -----ceEEEe----------------------------ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--
Q 002519 835 -----ECVHEL----------------------------SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-- 879 (913)
Q Consensus 835 -----~~i~~~----------------------------~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-- 879 (913)
..+..+ ......|++++.+++|++++.|+.||.|-||+..+.+++
T Consensus 239 ~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~ 318 (398)
T KOG0771|consen 239 VDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY 318 (398)
T ss_pred ccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe
Confidence 000000 001236889999999999999999999999999998887
Q ss_pred EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 880 TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 880 ~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
....|...|+.+.|+||.+++++.+.|..+.|.
T Consensus 319 vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 319 VKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred ehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 445799999999999999999998888877664
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-11 Score=135.05 Aligned_cols=271 Identities=14% Similarity=0.177 Sum_probs=187.5
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeC----CCcEEEEECCCC--c--eeeEeccCCCCeEEEEECCCCCEEEEE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGH----DKKAVLWHTDTL--K--SKTNLEEHSSLITDVRFSPSMPRLATS 693 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~----Dg~V~vwd~~~~--~--~~~~l~~h~~~V~~l~fspdg~~Lasg 693 (913)
.+..+..+. -......+++++++++|.+... ++.|..|++... . .+..........+.|++++++++|+++
T Consensus 26 ~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 26 TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEE
Confidence 455555533 3455777999999999999877 468999988753 2 333444345567789999999999999
Q ss_pred eC-CCeEEEEEcCCCCceeEE---ec----------cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eeE--
Q 002519 694 SF-DKTVRVWDADNPGYSLRT---FM----------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTR-- 755 (913)
Q Consensus 694 s~-Dg~V~Iwdl~~~~~~~~~---~~----------~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--~~~-- 755 (913)
.. +|.|.+++++..+..... +. .......++.|+|+++.++++.-....|++|++.... ...
T Consensus 105 ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 105 NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE
T ss_pred EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee
Confidence 86 899999999875543332 11 1234578899999999888777667889999998765 322
Q ss_pred Eee----CCceEEEEecCCCEEEEEEc-CCeEEEEECC--CCe--EEEEecCC------CCCeEEEEEcCCCCEEEEEeC
Q 002519 756 VFK----GGTAQMRFQPHLGRYLAAAA-ENVVSILDAE--TQA--CRLSLQGH------TKPIDSVCWDPSGELLASVSE 820 (913)
Q Consensus 756 ~~~----~~~~~v~~s~~~~~ll~~~~-dg~I~i~D~~--t~~--~~~~l~~h------~~~V~sl~~spdg~~l~s~s~ 820 (913)
.+. .+...+.|+++++++++... ++.|.+|++. ++. .+..+... ......|+++|||++|+++..
T Consensus 185 ~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 185 SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence 222 24567999999998887776 7789999887 442 22222211 125788999999998888876
Q ss_pred C--eEEEEECC-CCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEC--CCCcEEEEc--ccCCCeEEEE
Q 002519 821 D--SVRVWTVG-SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNM--SENKTMTLT--AHEGLIAALA 892 (913)
Q Consensus 821 d--~I~vwdl~-~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d-g~I~iwd~--~~~~~~~~~--~h~~~V~~l~ 892 (913)
+ .|.+|++. .......+..+...+.....+.++|+|++|+++..+ +.|.+|++ .++.+.... ..-....||.
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 6 99999994 334556667777666778999999999999998854 68998866 466655332 2334455655
Q ss_pred E
Q 002519 893 V 893 (913)
Q Consensus 893 ~ 893 (913)
|
T Consensus 345 f 345 (345)
T PF10282_consen 345 F 345 (345)
T ss_dssp E
T ss_pred C
Confidence 4
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.5e-13 Score=137.85 Aligned_cols=276 Identities=18% Similarity=0.319 Sum_probs=187.8
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----eeeEeccC------------CCCeEEEEECCCCC--EEEE
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEH------------SSLITDVRFSPSMP--RLAT 692 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-----~~~~l~~h------------~~~V~~l~fspdg~--~Las 692 (913)
..+-|.+|.|..+|.+||||+.+|.|.+|.-+... ....+..| ...|..|+|.+++. .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 35679999999999999999999999999654222 23334333 34588999988765 5777
Q ss_pred EeCCCeEEEEEcCCCCcee----------------------------------EEe-ccCCCCeEEEEEcCCCCeEEEEE
Q 002519 693 SSFDKTVRVWDADNPGYSL----------------------------------RTF-MGHSASVMSLDFHPNKDDLICSC 737 (913)
Q Consensus 693 gs~Dg~V~Iwdl~~~~~~~----------------------------------~~~-~~h~~~V~sl~fsp~~~~ll~sg 737 (913)
...|++|++|.+...+... +.+ ..|.--|.+|.++.|...++ ++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec
Confidence 7889999999986532111 111 25788899999999988766 54
Q ss_pred eCCCcEEEEEcCCCee-eEE--ee--------CCceEEEEecCC-CEEEEEEcCCeEEEEECCCCeEE----EEec----
Q 002519 738 DGDGEIRYWSINNGSC-TRV--FK--------GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACR----LSLQ---- 797 (913)
Q Consensus 738 s~Dg~I~iwdl~~~~~-~~~--~~--------~~~~~v~~s~~~-~~ll~~~~dg~I~i~D~~t~~~~----~~l~---- 797 (913)
+|-.|.+|+++--.. ... ++ .-+++..|+|.. +.++..++.|+|++.|++..... ..+.
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 588999999874321 111 11 124556788876 45666777899999999853211 1111
Q ss_pred --------CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCC---------------CceEEEEEeC
Q 002519 798 --------GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG---------------NKFHSCVFHP 854 (913)
Q Consensus 798 --------~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~---------------~~i~~l~~sp 854 (913)
+--..|..+.|+.+|+|+++-+.-+|+|||+.... +.+..+..|. ..-..|+|+-
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 11235788999999999998888899999996543 2333333221 1124688999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE--EEc--------------------cc-------------CCCeEEEEEeCCCCE
Q 002519 855 TYPSLLVIGCYQSLELWNMSENKTM--TLT--------------------AH-------------EGLIAALAVSTETGY 899 (913)
Q Consensus 855 ~g~~l~s~s~dg~I~iwd~~~~~~~--~~~--------------------~h-------------~~~V~~l~~spdg~~ 899 (913)
++.++++|+..+.+++|++..+... ++. +. ...|...+|+|..+.
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ 419 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENS 419 (433)
T ss_pred CcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccce
Confidence 9999999999999999996544322 110 00 112445689999999
Q ss_pred EEEEeCCCcEEEe
Q 002519 900 VASASHDKFVKLW 912 (913)
Q Consensus 900 Lasgs~DG~I~IW 912 (913)
||.+..+. ++||
T Consensus 420 ia~aatnn-lyif 431 (433)
T KOG1354|consen 420 IAVAATNN-LYIF 431 (433)
T ss_pred eeeeecCc-eEEe
Confidence 98887654 5554
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-11 Score=127.83 Aligned_cols=231 Identities=16% Similarity=0.229 Sum_probs=161.7
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEE-EeCC------CeEEEEEcCCC
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFD------KTVRVWDADNP 707 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~D------g~V~Iwdl~~~ 707 (913)
....++|+-|...+++|..+| ++||+++..+.......+.+.+.-+..---.++|+. |+.+ ..|.|||-..
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k- 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK- 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc-
Confidence 455599999999999987665 899999875554433333333222221112345443 3332 4799999443
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeeEEeeC---CceEEEEecCC-CEEEEEE--cCC
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKG---GTAQMRFQPHL-GRYLAAA--AEN 780 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~-~~~~~~~~~~---~~~~v~~s~~~-~~ll~~~--~dg 780 (913)
.+++.++. ...+|.+|++.++ +++ +. .++.|++|... +.+.++.+.. +..-.++.+.. ..+++.- .-|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riV-vv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIV-VV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEE-EE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 56666654 6788999999865 243 32 47899999987 4555555543 22223344433 3333322 258
Q ss_pred eEEEEECCCCeE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCCceEEEeecC--CCceEEEEEeC
Q 002519 781 VVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHP 854 (913)
Q Consensus 781 ~I~i~D~~t~~~--~~~l~~h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~~~~i~~~~~~--~~~i~~l~~sp 854 (913)
.|.|.|+...+. ...+.+|...|.|++.+-+|.+||+++.. -|||||..++ ..+.++... ...|.+++|+|
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCC
Confidence 999999987765 47788999999999999999999999988 7999999988 455555432 34699999999
Q ss_pred CCCEEEEEEcCCeEEEEECCC
Q 002519 855 TYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 855 ~g~~l~s~s~dg~I~iwd~~~ 875 (913)
+..+|++++..|+|+||.++.
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEEcCCCeEEEEEeec
Confidence 999999999999999998765
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.8e-12 Score=145.21 Aligned_cols=203 Identities=16% Similarity=0.209 Sum_probs=145.8
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEe--CCCcEEEEEcCCCeee--EEeeCCceEEEEecCCCEE
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCT--RVFKGGTAQMRFQPHLGRY 773 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs--~Dg~I~iwdl~~~~~~--~~~~~~~~~v~~s~~~~~l 773 (913)
.|.+||.+. ...+.+..+...+.+.+|+|||+.++++.. .+..|++||+.+++.. ..+++....+.|+|++..+
T Consensus 180 ~l~~~d~dg--~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDG--YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCC--CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence 688888874 233444556778999999999998876543 2457999999888543 3455666778999999988
Q ss_pred EEEEc-CC--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCc
Q 002519 774 LAAAA-EN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 846 (913)
Q Consensus 774 l~~~~-dg--~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~ 846 (913)
+.... ++ .|++||+.+++.... ..+...+...+|+|||+.|+..+.+ .|.++|+.++. ...+......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~lt~~~~~ 332 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRITWEGSQ 332 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEeecCCCC
Confidence 87643 44 599999998866543 3344567889999999988776653 45555665442 2223333444
Q ss_pred eEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCc
Q 002519 847 FHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 908 (913)
Q Consensus 847 i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~ 908 (913)
.....|+|+|++|+..+.+ ..|++||+.+++...+... .......|+|||++|+.++.|+.
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCC
Confidence 5678899999999887654 3689999998887655532 23456889999999999988765
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.6e-12 Score=142.02 Aligned_cols=252 Identities=14% Similarity=0.152 Sum_probs=163.0
Q ss_pred eeeEeecCCCCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeeEeccC-------CCCeEEEEECCCCCEEEEEeC-
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSPSMPRLATSSF- 695 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~~~~~~l~~h-------~~~V~~l~fspdg~~Lasgs~- 695 (913)
.+.+++... ...++++|+||+++++++ .++.|.|+|.++.+.++.+... ...+..|..++....++..-.
T Consensus 70 ~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 70 VVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp EEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT
T ss_pred EEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc
Confidence 333444333 468899999999999876 5799999999999999887643 346788888998886666655
Q ss_pred CCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCce------EEEEecC
Q 002519 696 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA------QMRFQPH 769 (913)
Q Consensus 696 Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~------~v~~s~~ 769 (913)
.+.|.+.|......................|.|++++++++...+..|-++|.++++.+..+..+.. .--.+|.
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~ 228 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG 228 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT
T ss_pred CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCC
Confidence 4888888887644444344445567788999999998887777888999999999988766542211 1112333
Q ss_pred CCEE----------EEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE---eCC--eEEEEECCCCCCC
Q 002519 770 LGRY----------LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV---SED--SVRVWTVGSGSEG 834 (913)
Q Consensus 770 ~~~l----------l~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~---s~d--~I~vwdl~~~~~~ 834 (913)
.+.+ +.....+.+.+||....+.+.++...... .-+..+|+++++++. +.+ .|.|+|.++.
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--- 304 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--- 304 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT---
T ss_pred cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc---
Confidence 3222 23333445667888889999999877666 778889999999988 444 9999999876
Q ss_pred ceEEEeec-CCCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEE
Q 002519 835 ECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMTL 881 (913)
Q Consensus 835 ~~i~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg--~I~iwd~~~~~~~~~ 881 (913)
+.+..+.. ....+..+.|+++|++++++..++ .|.|||..+.+++..
T Consensus 305 ~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 305 KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence 44455432 233588999999999988887664 699999999998843
|
... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.5e-11 Score=132.14 Aligned_cols=266 Identities=16% Similarity=0.167 Sum_probs=180.2
Q ss_pred EEEEeCC----CcEEEEEC--CCCceeeEe-ccCCCCeEEEEECCCCCEEEEEeC----CCeEEEEEcCCC-Cc--eeEE
Q 002519 648 LATGGHD----KKAVLWHT--DTLKSKTNL-EEHSSLITDVRFSPSMPRLATSSF----DKTVRVWDADNP-GY--SLRT 713 (913)
Q Consensus 648 Lasgs~D----g~V~vwd~--~~~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~----Dg~V~Iwdl~~~-~~--~~~~ 713 (913)
+++|+++ +.|++|++ ++++....- .........|+++|++++|+++.. ++.|..|++... +. .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4566666 68999888 344432211 124455778999999999999977 579999999874 22 2223
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeeEE---e-------------eCCceEEEEecCCCEEEEE
Q 002519 714 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---F-------------KGGTAQMRFQPHLGRYLAA 776 (913)
Q Consensus 714 ~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~-~~~~~~---~-------------~~~~~~v~~s~~~~~ll~~ 776 (913)
..........|+++|+++.++++...+|.|.++++.. +..... + ..+...+.++|++++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3323445567999999998887777899999999987 433322 1 1234578999999998887
Q ss_pred Ec-CCeEEEEECCCCe--E--EEEec-CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCC-CCCCceEEEeecC----
Q 002519 777 AA-ENVVSILDAETQA--C--RLSLQ-GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGS-GSEGECVHELSCN---- 843 (913)
Q Consensus 777 ~~-dg~I~i~D~~t~~--~--~~~l~-~h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~-~~~~~~i~~~~~~---- 843 (913)
.. ...|++|++.... . ...+. .....-+.++|+|+++++++..+. .|.+|++.. ......+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 66 5689999887654 2 22232 234567899999999988887766 899999872 2223333333321
Q ss_pred --CCceEEEEEeCCCCEEEEEEcC-CeEEEEECC--CCcEE---EEcccCCCeEEEEEeCCCCEEEEEe-CCCcEEEeC
Q 002519 844 --GNKFHSCVFHPTYPSLLVIGCY-QSLELWNMS--ENKTM---TLTAHEGLIAALAVSTETGYVASAS-HDKFVKLWK 913 (913)
Q Consensus 844 --~~~i~~l~~sp~g~~l~s~s~d-g~I~iwd~~--~~~~~---~~~~h~~~V~~l~~spdg~~Lasgs-~DG~I~IWd 913 (913)
......+.++|+|++|+++... +.|.+|+++ ++++. .+.......+.++++|+|++|++++ .++.|.+|+
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1257889999999999887754 699999984 34443 3333455689999999999999887 567888874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.7e-12 Score=145.34 Aligned_cols=233 Identities=17% Similarity=0.154 Sum_probs=157.4
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCC
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 731 (913)
Q Consensus 655 g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 731 (913)
..|.+||.+ +.....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+ +... .+......+.+..|+||++
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~~-~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRRR-VVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCEE-EeecCCCCccceEECCCCC
Confidence 457777764 45555666778889999999999999888753 3599999987 3332 2333445567899999999
Q ss_pred eEEEEEeCCCcEEEEEc--CCCeeeEEee--CCceEEEEecCCCEEEEEEc-CCe--EEEEECCCCeEEEEecCCCCCeE
Q 002519 732 DLICSCDGDGEIRYWSI--NNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENV--VSILDAETQACRLSLQGHTKPID 804 (913)
Q Consensus 732 ~ll~sgs~Dg~I~iwdl--~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~-dg~--I~i~D~~t~~~~~~l~~h~~~V~ 804 (913)
.++++.+.+|...||.+ ..+....... .......|+|++..++.++. ++. |++++..+++..... .+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence 88888888887666654 4444322221 23456789999998887665 344 444455555433222 2233345
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 002519 805 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 877 (913)
Q Consensus 805 sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~I~iwd~~~~~ 877 (913)
..+|+|||++|+..+.+ .|.+||+.++.. ..+.. ........|+|+++.|+.++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 68999999988876643 599999977632 12222 22346779999999999888665 56777775544
Q ss_pred EEEEcccCCCeEEEEEeCC
Q 002519 878 TMTLTAHEGLIAALAVSTE 896 (913)
Q Consensus 878 ~~~~~~h~~~V~~l~~spd 896 (913)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 4466667788888888873
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-12 Score=151.95 Aligned_cols=249 Identities=19% Similarity=0.266 Sum_probs=172.2
Q ss_pred EECCCCceeeEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEEcCCCC------ceeEEeccCCCCeEEEEEcCCCCe
Q 002519 660 WHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDD 732 (913)
Q Consensus 660 wd~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~Iwdl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ 732 (913)
|+. .|..+..+..|+..|..++.+++. .+|++||.||+|+||++..-. +...++......+.++.+++.+..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 543 477888899999999999988765 899999999999999987421 223344446778899999988776
Q ss_pred EEEEEeCCCcEEEEEcCCCee-------eEEee----CCceE-EEEecC-CC-EEEEEEcCCeEEEEECCCCeEEEEecC
Q 002519 733 LICSCDGDGEIRYWSINNGSC-------TRVFK----GGTAQ-MRFQPH-LG-RYLAAAAENVVSILDAETQACRLSLQG 798 (913)
Q Consensus 733 ll~sgs~Dg~I~iwdl~~~~~-------~~~~~----~~~~~-v~~s~~-~~-~ll~~~~dg~I~i~D~~t~~~~~~l~~ 798 (913)
+. .++.||.|++.+++-... .+..+ +.+.. .++... .. .++++..-+.|..||+++.....+++.
T Consensus 1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 55 669999999999876211 11111 11111 122222 23 566677788999999998876665553
Q ss_pred --CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEee-cCCCceEEEEEeCCCC---EEEEEE--cCCeEE
Q 002519 799 --HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYP---SLLVIG--CYQSLE 869 (913)
Q Consensus 799 --h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~-~~~~~i~~l~~sp~g~---~l~s~s--~dg~I~ 869 (913)
..+.|++++.+|.+.++++|+.. .+.+||+|-+ ..+..+. .+..++..+..+|-.+ .+++++ ..+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 35789999999999999999988 9999999865 3333332 2345666666666443 444444 457999
Q ss_pred EEECCCCcEE-EEcc-------------------cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 870 LWNMSENKTM-TLTA-------------------HEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 870 iwd~~~~~~~-~~~~-------------------h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+|++.++.+. .+.. +.-....+++..-+.++.+|+.|..|+.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 9999988654 1111 111223344445566899999999999998
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.8e-14 Score=150.59 Aligned_cols=164 Identities=18% Similarity=0.283 Sum_probs=126.3
Q ss_pred ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCC-CCeEEEEEeCCCcEE
Q 002519 666 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIR 744 (913)
Q Consensus 666 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~ 744 (913)
.....+.||.+.|.|+.|+.+|.+|++||+|-.|.|||.-..+.....-.+|...|.++.|-|. ++.++++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3456788999999999999999999999999999999998644444455699999999999985 566888999999999
Q ss_pred EEEcCCCee----------eEEee---CCceEEEEecCC-CEEEEEEcCCeEEEEECCCCeEE-EEe---------cCCC
Q 002519 745 YWSINNGSC----------TRVFK---GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACR-LSL---------QGHT 800 (913)
Q Consensus 745 iwdl~~~~~----------~~~~~---~~~~~v~~s~~~-~~ll~~~~dg~I~i~D~~t~~~~-~~l---------~~h~ 800 (913)
+||+...+. .+.+. ..+..++..|.+ ..+++++.||+|+-||++..... ... ...-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999985321 11122 234557777777 67889999999999999974211 111 1111
Q ss_pred CCeEEEEEcCCCC-EEEEEeCC-eEEEEECC
Q 002519 801 KPIDSVCWDPSGE-LLASVSED-SVRVWTVG 829 (913)
Q Consensus 801 ~~V~sl~~spdg~-~l~s~s~d-~I~vwdl~ 829 (913)
-...|+.++|... +|++|+.| .+++||.+
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 2467889999665 88999999 99999975
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-12 Score=147.69 Aligned_cols=222 Identities=18% Similarity=0.246 Sum_probs=151.5
Q ss_pred eEeecCCCCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEE-EEeCCCeEEEE
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVW 702 (913)
Q Consensus 627 ~~l~~H~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg~V~Iw 702 (913)
..+..+.+.|.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+ +.+.+|...||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 4455678889999999999999887753 359999999886543 333445677899999999886 45678877777
Q ss_pred EcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEc--CCCeeeEE-eeC-CceEEEEecCCCEEEEEEc
Q 002519 703 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI--NNGSCTRV-FKG-GTAQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 703 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl--~~~~~~~~-~~~-~~~~v~~s~~~~~ll~~~~ 778 (913)
.++..+...+.+..+...+....|+|||+.+++++..+|...||.+ .+++.... +.+ ......|+|++..++.++.
T Consensus 268 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 268 TVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred EEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 6653333455566566666778999999988877665666666655 44443332 222 2345789999999888776
Q ss_pred CC---eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEE
Q 002519 779 EN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 779 dg---~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~ 851 (913)
++ .|++||+.+++...... ......++|+|||++|+..+.+ .+.+.++. + .....+..+.+.+...+
T Consensus 348 ~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~ 421 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPS 421 (427)
T ss_pred cCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCc
Confidence 54 69999998886543322 2334678999999987777654 35555653 2 23333334455566667
Q ss_pred EeCC
Q 002519 852 FHPT 855 (913)
Q Consensus 852 ~sp~ 855 (913)
|+|-
T Consensus 422 wsp~ 425 (427)
T PRK02889 422 WGPF 425 (427)
T ss_pred cCCC
Confidence 7663
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-11 Score=133.45 Aligned_cols=302 Identities=16% Similarity=0.187 Sum_probs=207.8
Q ss_pred ccCCCCCCCCCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCC---------------cEEEEECCCC
Q 002519 601 SHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK---------------KAVLWHTDTL 665 (913)
Q Consensus 601 ~~d~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg---------------~V~vwd~~~~ 665 (913)
++.+..........+.++.+..+..+..+ -...|..+.|||.++||.+=+... .+.|||+.++
T Consensus 41 SP~G~~l~~~~~~~V~~~~g~~~~~l~~~--~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg 118 (561)
T COG5354 41 SPLGTYLFSEHAAGVECWGGPSKAKLVRF--RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG 118 (561)
T ss_pred cCcchheehhhccceEEccccchhheeee--ecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc
Confidence 33334444444444445555454433333 345699999999999999866433 4999999999
Q ss_pred ceeeEeccCCCC--eE-EEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccC-CCCeEEEEEcCCCCe-EEEE----
Q 002519 666 KSKTNLEEHSSL--IT-DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDD-LICS---- 736 (913)
Q Consensus 666 ~~~~~l~~h~~~--V~-~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h-~~~V~sl~fsp~~~~-ll~s---- 736 (913)
..+..+..-... .+ -+.|+.+++++|-. ....+.|+++ ++......+..- ...|....|+|.+++ .||.
T Consensus 119 ~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPE 196 (561)
T COG5354 119 MIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPE 196 (561)
T ss_pred eeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccc
Confidence 999999887766 66 78899988877655 3345999997 323222222111 356888889987433 2222
Q ss_pred -EeCCCcEEEEEcCCCeeeEE---eeCCceEEEEecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEecCCCC
Q 002519 737 -CDGDGEIRYWSINNGSCTRV---FKGGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTK 801 (913)
Q Consensus 737 -gs~Dg~I~iwdl~~~~~~~~---~~~~~~~v~~s~~~~~ll~~~~-----------dg~I~i~D~~t~~~~~~l~~h~~ 801 (913)
.+.++.++||.+..++.+.. ++.....+.|.+.+.++++-.. +..++|+++....+.... +-.+
T Consensus 197 k~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~ 275 (561)
T COG5354 197 KLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKD 275 (561)
T ss_pred cCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccc
Confidence 45688999999987765543 4456667889999887766432 357888888855544443 5678
Q ss_pred CeEEEEEcCCCCEEEEEe--CC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCC
Q 002519 802 PIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSE 875 (913)
Q Consensus 802 ~V~sl~~spdg~~l~s~s--~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~ 875 (913)
+|..++|.|.++.+++++ .. .+.++|++.. .... .....-..+.|+|.++++++++.| |.|.+||...
T Consensus 276 pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 276 PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred cceeeeecccCCceeEEecccccceeecccccc----eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCC
Confidence 999999999988666555 44 8999999753 2222 224556778999999999999887 5899999887
Q ss_pred CcEEEEcccCCCeEEEEEeCCCCEEEEEe------CCCcEEEeC
Q 002519 876 NKTMTLTAHEGLIAALAVSTETGYVASAS------HDKFVKLWK 913 (913)
Q Consensus 876 ~~~~~~~~h~~~V~~l~~spdg~~Lasgs------~DG~I~IWd 913 (913)
...+.-.-......-+.|+||+.++.++. .|..|+|||
T Consensus 350 rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 350 RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred ceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEE
Confidence 76553222333445568999999887764 477899996
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-12 Score=134.36 Aligned_cols=250 Identities=16% Similarity=0.267 Sum_probs=189.6
Q ss_pred ccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCe
Q 002519 621 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKT 698 (913)
Q Consensus 621 ~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~ 698 (913)
+.+.....++||.+.|++...-|...-+++.+.|.+|+||--. .++.-..+. ....+++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 3566778899999999999999988899999999999999543 444333332 34578999999999999999999999
Q ss_pred EEEEEcCCC---CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--CCceEEEEecCCCEE
Q 002519 699 VRVWDADNP---GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRY 773 (913)
Q Consensus 699 V~Iwdl~~~---~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~l 773 (913)
|.-+.+... ...++.+..|...|..+.|+.... .+++++.|..+..--.+.+..+..+. .....+.+... +.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 999877642 344667778999999999987655 45588888777655555554443322 22222222221 44
Q ss_pred EEEEcCCeEEEE--ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEE
Q 002519 774 LAAAAENVVSIL--DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 850 (913)
Q Consensus 774 l~~~~dg~I~i~--D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l 850 (913)
+++...|.|.+. +......+.++.+|...+++++|.+...+|.+|..| .|.+||+.-. .....++.+|...|..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~--~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR--KGTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC--cceeeeeccchhhhhhh
Confidence 555556655554 344557888999999999999999999999999999 9999999643 34566777888889888
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCC
Q 002519 851 VFHPTYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 851 ~~sp~g~~l~s~s~dg~I~iwd~~~ 875 (913)
..-+--+.+++++.||.|.+|+++.
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccc
Confidence 8888888999999999999999864
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.3e-12 Score=134.68 Aligned_cols=235 Identities=16% Similarity=0.175 Sum_probs=177.3
Q ss_pred CCCCeEEEEECCCCC--EEEEEeCCCeEEEEEcCCCCce-----eEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEE
Q 002519 674 HSSLITDVRFSPSMP--RLATSSFDKTVRVWDADNPGYS-----LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 746 (913)
Q Consensus 674 h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwdl~~~~~~-----~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iw 746 (913)
....|..++|.-++. .|+.++.|..+..+++...+.. +.........|..+.... . .|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d--g-~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD--G-TLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC--C-EEEEEecCCcEEEE
Confidence 345677778865544 4555546777777777653221 113344566777777652 3 45588999999999
Q ss_pred EcCCCe-----eeEEee-CCceEEEEecCCCEEEE-EEcC--CeEEEEECCCCeEEEEecCCC---------CCeEEEEE
Q 002519 747 SINNGS-----CTRVFK-GGTAQMRFQPHLGRYLA-AAAE--NVVSILDAETQACRLSLQGHT---------KPIDSVCW 808 (913)
Q Consensus 747 dl~~~~-----~~~~~~-~~~~~v~~s~~~~~ll~-~~~d--g~I~i~D~~t~~~~~~l~~h~---------~~V~sl~~ 808 (913)
.++.+. .+..-. .+...+.-++....+++ |+.+ +.+.|||++..+.++.-+.-. -+++++.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 998443 222222 23445556666666666 6667 789999999987776654321 35788999
Q ss_pred cCC--CCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcc
Q 002519 809 DPS--GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTA 883 (913)
Q Consensus 809 spd--g~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~ 883 (913)
.+. ...|++++.- .|++||.+.. .+++..+...+..++++...|++++|+++...+.+..||++.++.. .+.+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~q--RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQ--RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCccc--CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 987 7788888877 9999999865 4677777777999999999999999999999999999999999988 4789
Q ss_pred cCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 884 HEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 884 h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
..+.|++|..+|...+|++||-|..|||+|
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 999999999999999999999999999997
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-11 Score=126.69 Aligned_cols=229 Identities=13% Similarity=0.202 Sum_probs=164.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCce-eEEeccCCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEcC
Q 002519 677 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSIN 749 (913)
Q Consensus 677 ~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~-~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D------g~I~iwdl~ 749 (913)
...+++|+-|...+++|.++| .|||+++.-++. .+.+....-.+..+-|- .+.+.++|+.+ ..|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 355699999999999999888 899999752221 11222112233333343 23445556544 579999977
Q ss_pred CCeeeEEe--eCCceEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEecCC--CCCeEEEEEcCCCCEEEEEeCC--e
Q 002519 750 NGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQGH--TKPIDSVCWDPSGELLASVSED--S 822 (913)
Q Consensus 750 ~~~~~~~~--~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~-t~~~~~~l~~h--~~~V~sl~~spdg~~l~s~s~d--~ 822 (913)
..+++..+ ...+..+++.++ .++...++.|+||... +.+.++.+..- ...+.+++-.-+..+||.-+.. .
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 77777654 567777887765 4556678899999887 44666655542 3334444444455577776666 8
Q ss_pred EEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEc--ccCCCeEEEEEeCCCC
Q 002519 823 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLT--AHEGLIAALAVSTETG 898 (913)
Q Consensus 823 I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~I~iwd~~~~~~~-~~~--~h~~~V~~l~~spdg~ 898 (913)
|.|-|+...... .-..+..|...|.+++.+-+|..+++++..| .|+|||..+++.+ ++. .....|.+++|+|+..
T Consensus 161 vQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999765322 3467788999999999999999999999999 5899999999987 333 3456899999999999
Q ss_pred EEEEEeCCCcEEEe
Q 002519 899 YVASASHDKFVKLW 912 (913)
Q Consensus 899 ~Lasgs~DG~I~IW 912 (913)
+||++|+.|+|+||
T Consensus 240 ~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999999998
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-11 Score=143.67 Aligned_cols=221 Identities=18% Similarity=0.248 Sum_probs=152.8
Q ss_pred eeeEeecCCCCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEE-EEeCCC--e
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDK--T 698 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg--~ 698 (913)
....+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++.. .+..+.+...+++|+|||+.|+ +.+.+| .
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 344566778889999999999999988744 46999999887653 3334455566899999999776 445555 5
Q ss_pred EEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc--EEEEEcCCCeeeEEe-eC-CceEEEEecCCCEEE
Q 002519 699 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVF-KG-GTAQMRFQPHLGRYL 774 (913)
Q Consensus 699 V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~--I~iwdl~~~~~~~~~-~~-~~~~v~~s~~~~~ll 774 (913)
|++||+.+ +. +..+..+......++|+||++.++++...+|. |+++|+.+++..... .+ ......|+|++..++
T Consensus 274 Iy~~d~~~-g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 274 IYVMDLGS-RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred EEEEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 99999986 33 44455565566789999999988877666665 667777776654332 22 234579999999988
Q ss_pred EEEcCC---eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCce
Q 002519 775 AAAAEN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKF 847 (913)
Q Consensus 775 ~~~~dg---~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i 847 (913)
....++ .|.+||+.+++.. .+. +......+.|+|||++|+..+.+ .|.++++... ....+..+...+
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~ 425 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEV 425 (433)
T ss_pred EEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCC
Confidence 876543 6999999888655 333 22345577999999977766653 5777777432 233333334556
Q ss_pred EEEEEeC
Q 002519 848 HSCVFHP 854 (913)
Q Consensus 848 ~~l~~sp 854 (913)
...+|+|
T Consensus 426 ~~p~wsp 432 (433)
T PRK04922 426 REPAWSP 432 (433)
T ss_pred CCCccCC
Confidence 6666765
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.1e-13 Score=142.31 Aligned_cols=249 Identities=20% Similarity=0.279 Sum_probs=188.5
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCC-CCeEEEEEeCCCcE
Q 002519 665 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEI 743 (913)
Q Consensus 665 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I 743 (913)
......|..|.+.|..|.|+..|..|++||.|..|.+||.......+....+|...|.-..|.|. +..-|++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 34556788999999999999999999999999999999999866667777789999988888885 34456799999999
Q ss_pred EEEEcCCCe------eeEEeeCCceEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEe---cCCCC---CeEEEEEcC
Q 002519 744 RYWSINNGS------CTRVFKGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSL---QGHTK---PIDSVCWDP 810 (913)
Q Consensus 744 ~iwdl~~~~------~~~~~~~~~~~v~~s~~~~-~ll~~~~dg~I~i~D~~t~~~~~~l---~~h~~---~V~sl~~sp 810 (913)
++=.+.... .+....+++..++..|+.. .|++++.|+.+.-+|++...+...+ +.+.. ....|+..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 998775432 3334567788888888774 5777888999999999987433222 23333 577889999
Q ss_pred CCC-EEEEEeCC-eEEEEECCCCCCC---ceEEE------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--C-
Q 002519 811 SGE-LLASVSED-SVRVWTVGSGSEG---ECVHE------LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE--N- 876 (913)
Q Consensus 811 dg~-~l~s~s~d-~I~vwdl~~~~~~---~~i~~------~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~--~- 876 (913)
... .+++++.| .++|||.+...+. ..+.. .......|++++|+.++.-++++..|..|++|.-.- +
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 666 88888888 9999998764321 11111 112345689999999999999999999999995432 2
Q ss_pred ---------cEE--EEcccCC--CeEEEEE-eCCCCEEEEEeCCCcEEEeC
Q 002519 877 ---------KTM--TLTAHEG--LIAALAV-STETGYVASASHDKFVKLWK 913 (913)
Q Consensus 877 ---------~~~--~~~~h~~--~V~~l~~-spdg~~Lasgs~DG~I~IWd 913 (913)
..+ .+++|.. .|.++-| -|...||++|++-|.|.|||
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 111 3667754 4666654 67889999999999999997
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.6e-11 Score=139.92 Aligned_cols=231 Identities=19% Similarity=0.215 Sum_probs=158.0
Q ss_pred CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCC
Q 002519 654 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 730 (913)
Q Consensus 654 Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~ 730 (913)
...|.++|.+.. ....+..+...+.+.+|+||+++|+.++.+ ..|++||+.++ .. ..+..+...+.+++|+|++
T Consensus 169 ~~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g-~~-~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 169 RYELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG-QR-EKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred cceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC-CE-EEeecCCCCccceEECCCC
Confidence 346788887643 345565677789999999999999988754 47999999873 22 2333455667789999999
Q ss_pred CeEEEEEeCCC--cEEEEEcCCCeeeEEeeC--CceEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCe
Q 002519 731 DDLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPI 803 (913)
Q Consensus 731 ~~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V 803 (913)
+.++++.+.++ .|++||+.++........ ......|++++..+++++.. + .|+++|+.+++.. .+..+...+
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~ 324 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYN 324 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence 98887776555 588999987765433322 23457899999988877653 2 6888898877643 333355667
Q ss_pred EEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCC
Q 002519 804 DSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSEN 876 (913)
Q Consensus 804 ~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~I~iwd~~~~ 876 (913)
..++|+|+|++|+.++.+ .|.+||+.++.. ..+.. ........|+|++++|+..+.++ .+++++....
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~----~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE----RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 788999999988877654 688888876421 12221 12234568999999998888764 5666676555
Q ss_pred cEEEEcccCCCeEEEEE
Q 002519 877 KTMTLTAHEGLIAALAV 893 (913)
Q Consensus 877 ~~~~~~~h~~~V~~l~~ 893 (913)
....+..+.+.+..++|
T Consensus 400 ~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 400 FRARLPLGNGDVREPAW 416 (417)
T ss_pred eeeECCCCCCCcCCCCC
Confidence 44444444555555544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.9e-12 Score=137.44 Aligned_cols=238 Identities=17% Similarity=0.212 Sum_probs=171.8
Q ss_pred cCCCCeEEEEECCCCCEE-EEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002519 673 EHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 751 (913)
Q Consensus 673 ~h~~~V~~l~fspdg~~L-asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~ 751 (913)
.|....+.|..+|||.|| ++|.+.-.|++||+.+ ..++.-......|..+....|+-.-+|.-..|.+|-+..--..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan--LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN--LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccc--ceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 477788999999999976 5666788999999986 2233333333444444333332222233445777766543322
Q ss_pred eeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 002519 752 SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS 830 (913)
Q Consensus 752 ~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~ 830 (913)
.....++.....++++.....+++++....|+-++++.|..+..+......+++|..++...+|++|+.+ .|.+||.++
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 2222333444567777666778888888999999999999999888888999999999999999999988 999999987
Q ss_pred CCCCceEEE---eecCCC-----ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC--CeEEEEEeCC--CC
Q 002519 831 GSEGECVHE---LSCNGN-----KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG--LIAALAVSTE--TG 898 (913)
Q Consensus 831 ~~~~~~i~~---~~~~~~-----~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~--~V~~l~~spd--g~ 898 (913)
......+.. +..+.+ .|+++.|+.+|-.+++|+.+|.|.|||++..+.+.+..|.. +|..+.|.+. ..
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence 643333221 122222 38999999999999999999999999999999998887765 6888888665 34
Q ss_pred EEEEEeCCCcEEEeC
Q 002519 899 YVASASHDKFVKLWK 913 (913)
Q Consensus 899 ~Lasgs~DG~I~IWd 913 (913)
.|+|. +...++|||
T Consensus 287 ~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 287 KVVSM-DKRILKIWD 300 (703)
T ss_pred eEEec-chHHhhhcc
Confidence 56554 456789997
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-11 Score=139.72 Aligned_cols=201 Identities=15% Similarity=0.209 Sum_probs=144.6
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeeE--EeeCCceEEEEecCCCEE
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTR--VFKGGTAQMRFQPHLGRY 773 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~--Dg~I~iwdl~~~~~~~--~~~~~~~~v~~s~~~~~l 773 (913)
.|.+||.+ +...+.+..+...+.+.+|+|||+.++++... +..|++||+.+++... .+.+......|+|++..+
T Consensus 183 ~l~~~d~d--g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQD--GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCC--CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence 68888875 44456667788899999999999987765532 4689999999886543 344556678999999987
Q ss_pred EEEE-cCC--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCc
Q 002519 774 LAAA-AEN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 846 (913)
Q Consensus 774 l~~~-~dg--~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~ 846 (913)
++.. .++ .|++||+.++... .+..+.......+|+|||+.|+..+.. .|++||+..+. ...+......
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~~~~~ 335 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRISFGGGR 335 (435)
T ss_pred EEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEeecCCCc
Confidence 6554 344 5888899887654 455566667789999999988776643 68888876542 2223223445
Q ss_pred eEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 847 FHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 847 i~~l~~sp~g~~l~s~s~dg---~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
+....|+|+|++|+....++ .|.+||+.++....+. ....+..+.|+|||++|+..+.+
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence 66788999999998877543 6888998766554333 33457788999999988776543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.4e-11 Score=136.65 Aligned_cols=232 Identities=15% Similarity=0.100 Sum_probs=159.6
Q ss_pred cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCe
Q 002519 656 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 732 (913)
Q Consensus 656 ~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ 732 (913)
.|.++|.+.+. ...+..+...+...+|+|||+.|+..+.+ ..|.+||+.+ +.. ..+....+.+....|+|+|+.
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~-g~~-~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT-GRR-EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-CCE-EEccCCCCCcCCeEECCCCCE
Confidence 47777877544 45566677789999999999999887654 3689999986 332 233333444567899999998
Q ss_pred EEEEEeCCC--cEEEEEcCCCeeeEEee--CCceEEEEecCCCEEEEEEc-C--CeEEEEECCCCeEEEEecCCCCCeEE
Q 002519 733 LICSCDGDG--EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPIDS 805 (913)
Q Consensus 733 ll~sgs~Dg--~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~-d--g~I~i~D~~t~~~~~~l~~h~~~V~s 805 (913)
++++.+.+| .|++||+.+++...... .......|+|++..++..+. + ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776665 58888999876554332 23455789999998887765 3 368888888876443222 2233446
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcE
Q 002519 806 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKT 878 (913)
Q Consensus 806 l~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~~~~ 878 (913)
..|+|+|++|+..+.+ .|.+||+.++.. ..+ .. ........|+|+|+.|+..+.+ ..|+++++.....
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~l---t~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RIL---TD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEc---cC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 7899999988776643 588899877532 222 21 1122356899999999888765 3688888876666
Q ss_pred EEEcccCCCeEEEEEeCC
Q 002519 879 MTLTAHEGLIAALAVSTE 896 (913)
Q Consensus 879 ~~~~~h~~~V~~l~~spd 896 (913)
..+..+.+.+...+|+|-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 566666677788888763
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.6e-11 Score=129.93 Aligned_cols=267 Identities=14% Similarity=0.188 Sum_probs=180.6
Q ss_pred CEEEEEEecCCCEEEEEeC-----------CCcEEEEECCCCceeeEeccC--CCCeE-EEEECCCCCEEEEEeCCCeEE
Q 002519 635 KVICCHFSSDGKLLATGGH-----------DKKAVLWHTDTLKSKTNLEEH--SSLIT-DVRFSPSMPRLATSSFDKTVR 700 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~-----------Dg~V~vwd~~~~~~~~~l~~h--~~~V~-~l~fspdg~~Lasgs~Dg~V~ 700 (913)
.|.-+.|||+.+||+|-+. ...++|||+.+|...+.|... ...++ -+.||.|++++|.-..| .|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEE
Confidence 5888999999999998653 257999999999999888763 22233 36899999999988775 489
Q ss_pred EEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEe-C----CCcEEEEEcCCCeeeEEee---CCceEEEEecCCCE
Q 002519 701 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-G----DGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGR 772 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs-~----Dg~I~iwdl~~~~~~~~~~---~~~~~v~~s~~~~~ 772 (913)
||+..+ -..+..-.-.-..|....|+|.+. +||--. . -..+.+..+.++..+++.. .....+.|...|.+
T Consensus 330 IyEtps-f~lld~Kslki~gIr~FswsP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 330 IYETPS-FMLLDKKSLKISGIRDFSWSPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEecCc-eeeecccccCCccccCcccCCCcc-eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 998865 222222122345688889999855 443221 1 2456677777776665533 23344667777666
Q ss_pred EEEEEc-------C---CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECC-CCCCCceE
Q 002519 773 YLAAAA-------E---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVG-SGSEGECV 837 (913)
Q Consensus 773 ll~~~~-------d---g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~-~~~~~~~i 837 (913)
|.+-.. . ..+.|+.++........-.-...|...+|.|.|+.+++-+.. ++.+|.+. +......+
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 655332 1 145566666554333333345778999999999976665543 79999998 44555566
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 002519 838 HELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 907 (913)
Q Consensus 838 ~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~DG 907 (913)
..+. ....+.+.|+|.|++++++.- .|.+.+||..-..+. ....| ...+.+.|.|.|+|+++++.-+
T Consensus 488 k~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 488 KELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred hhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehh
Confidence 6554 356788999999999888754 579999999853333 33333 3467789999999999998644
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-12 Score=127.75 Aligned_cols=153 Identities=20% Similarity=0.276 Sum_probs=121.6
Q ss_pred CCCeEEEEECCC-CC--EEEEEeCCCeEEEEEcCCCC---------ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc
Q 002519 675 SSLITDVRFSPS-MP--RLATSSFDKTVRVWDADNPG---------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 742 (913)
Q Consensus 675 ~~~V~~l~fspd-g~--~Lasgs~Dg~V~Iwdl~~~~---------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~ 742 (913)
.+.+.|..|..+ ++ +|+.|-++|.|.+||+.++. +.+.....|..+|.++.|.+...+=+ +|+.+..
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGi-sgga~dk 228 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGI-SGGADDK 228 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCc-CCCcccc
Confidence 345666665432 33 45677779999999999842 22334457999999999987544334 7788888
Q ss_pred EEEEEcCCC--e-----eeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEE
Q 002519 743 IRYWSINNG--S-----CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL 815 (913)
Q Consensus 743 I~iwdl~~~--~-----~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l 815 (913)
+..|++... . .+..-..++..+++.||++.+++++.|++|+||..++..++..++-|...|.+++|+|+..++
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence 999988653 1 222234577889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCC-eEEEEEC
Q 002519 816 ASVSED-SVRVWTV 828 (913)
Q Consensus 816 ~s~s~d-~I~vwdl 828 (913)
++++.| .|.+|++
T Consensus 309 AaaskD~rISLWkL 322 (323)
T KOG0322|consen 309 AAASKDARISLWKL 322 (323)
T ss_pred hhccCCceEEeeec
Confidence 999999 9999986
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.1e-12 Score=135.68 Aligned_cols=167 Identities=16% Similarity=0.260 Sum_probs=129.4
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeEec----cCCCCeEEEEECCCCC-EEEEEeCCCeEEEEEcCCCC---------
Q 002519 643 SDGKLLATGGHDKKAVLWHTDTLKSKTNLE----EHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPG--------- 708 (913)
Q Consensus 643 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~----~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwdl~~~~--------- 708 (913)
+++--|+.|-..|.|.+.|....+..+.+. -....|+||.|-|.+. .++++-.+|.+++||.+...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 466678888888999998876532222121 1347899999998655 55566679999999774210
Q ss_pred ------c------------eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE---eeCCceEEEEe
Q 002519 709 ------Y------------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV---FKGGTAQMRFQ 767 (913)
Q Consensus 709 ------~------------~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~---~~~~~~~v~~s 767 (913)
. ++..+.--.+.|..++|+|||.+ |++.+.||.+||||..+.+++.. +-++..+++|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~-LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKY-LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCce-EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 0 11111123457889999998875 55889999999999998876544 45788999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcC
Q 002519 768 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 810 (913)
Q Consensus 768 ~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp 810 (913)
||+++|++++.|..|.||.+...+.+..-.+|..+|..|+|+|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999999997
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-10 Score=123.70 Aligned_cols=256 Identities=10% Similarity=0.075 Sum_probs=169.4
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEEcCCCCceeEEeccCC------
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMGHS------ 718 (913)
Q Consensus 655 g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~V~Iwdl~~~~~~~~~~~~h~------ 718 (913)
++|.|.|.++++.+..+..-..+-. + ++||++.|++++. +..|.|||+.+ .+.+..+.-..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-HLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-CcEEeEEccCCCchhhc
Confidence 8999999999999998876544433 4 9999998877765 78899999998 55565554211
Q ss_pred -CCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCC-CeE-EE
Q 002519 719 -ASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET-QAC-RL 794 (913)
Q Consensus 719 -~~V~sl~fsp~~~~ll~sgs~-Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t-~~~-~~ 794 (913)
.....+.++|||+.++++--. +..|.++|+.+++.+..+..+.....+-.....+.+.|.||....+.+.+ ++. ..
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 223468999999988866534 89999999999999988775443333322223333444555444433222 221 11
Q ss_pred E---ecCCCCCeE-EEEEcC-CCCEEEEEeCCeEEEEECCCCCC--CceEEEeec-------CCCceEEEEEeCCCCEEE
Q 002519 795 S---LQGHTKPID-SVCWDP-SGELLASVSEDSVRVWTVGSGSE--GECVHELSC-------NGNKFHSCVFHPTYPSLL 860 (913)
Q Consensus 795 ~---l~~h~~~V~-sl~~sp-dg~~l~s~s~d~I~vwdl~~~~~--~~~i~~~~~-------~~~~i~~l~~sp~g~~l~ 860 (913)
. +.....++. .-.|.+ +|+++++..+++|.+.|+..... ...+..+.. ....+.-+++++++++++
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 1 111001110 013455 88888888888999999754321 112222111 122334499999999998
Q ss_pred EEEc----------CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-CCCcEEEeC
Q 002519 861 VIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 913 (913)
Q Consensus 861 s~s~----------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~Lasgs-~DG~I~IWd 913 (913)
+... .+.|.++|..+++.+....-...+..+++++|++ +|++.+ .++.|.|+|
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 8532 2489999999999997666677999999999999 877666 578888875
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.6e-11 Score=136.52 Aligned_cols=232 Identities=15% Similarity=0.136 Sum_probs=155.5
Q ss_pred cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC-C--eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCe
Q 002519 656 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-K--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 732 (913)
Q Consensus 656 ~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g--~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ 732 (913)
.|.++|.+... .+.+..+...+.+..|+|||+.|+..+.+ + .|++||+.++ .. ..+...........|+||++.
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg-~~-~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ-VR-EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC-Ce-EEecCCCCCcCCeeECCCCCE
Confidence 57777876543 34555667789999999999999877653 3 5888898863 32 222222333456899999999
Q ss_pred EEEEEeCCCc--EEEEEcCCCeeeEEeeC--CceEEEEecCCCEEEEEEc-C--CeEEEEECCCCeEEEEecCCCCCeEE
Q 002519 733 LICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPIDS 805 (913)
Q Consensus 733 ll~sgs~Dg~--I~iwdl~~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~-d--g~I~i~D~~t~~~~~~l~~h~~~V~s 805 (913)
++++.+.+|. |++||+.+++....... ......|+|++..++..+. + ..|+++|+.+++..... ........
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 8888777775 78888887765443322 3456889999998877765 3 36777888877644322 12233456
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcE
Q 002519 806 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKT 878 (913)
Q Consensus 806 l~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~I~iwd~~~~~~ 878 (913)
.+|+|||++|+..+.+ .|.++|+.++.. .. +... .......|+|+|+.|+..+.++ .|++++......
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~---lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QV---LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe-EE---ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 7999999988776543 466677766532 11 2211 1223457999999988877653 478888866655
Q ss_pred EEEcccCCCeEEEEEeCC
Q 002519 879 MTLTAHEGLIAALAVSTE 896 (913)
Q Consensus 879 ~~~~~h~~~V~~l~~spd 896 (913)
..+..+.+.+...+|+|-
T Consensus 430 ~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 566666777888888873
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.6e-10 Score=116.83 Aligned_cols=263 Identities=16% Similarity=0.161 Sum_probs=185.8
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCC---CcEEEEECCC--Cceee--EeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEE
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDT--LKSKT--NLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVW 702 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~--~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~Iw 702 (913)
.+.+.++-|+|+++.++|.++..+ |.|..|.++. |+... ........-+.|++++++++|+++.. -|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 466789999999999999887654 7788887774 44322 22223334488999999999999987 6899999
Q ss_pred EcCCCCceeE--EeccCCCC----------eEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----e--CCceEE
Q 002519 703 DADNPGYSLR--TFMGHSAS----------VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----K--GGTAQM 764 (913)
Q Consensus 703 dl~~~~~~~~--~~~~h~~~----------V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~--~~~~~v 764 (913)
-+...+.... ....|.+. +.+..|.|+++.++++.-.-..|.+|++..++....- + .+...+
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 9976554322 22235444 8889999999877755555678999999987654332 1 356779
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCC-eEEEEecC---------CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC
Q 002519 765 RFQPHLGRYLAAAA-ENVVSILDAETQ-ACRLSLQG---------HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 831 (913)
Q Consensus 765 ~~s~~~~~ll~~~~-dg~I~i~D~~t~-~~~~~l~~---------h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~ 831 (913)
.|+|+++...+.+. +++|.+|..... ..+..+.. -..+.-.|.+++||++|+++... .|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999998877776 899999988773 22222221 23456788999999999999877 8999988654
Q ss_pred C-CCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC--CCCcEEEEc--ccCCCeEEEEE
Q 002519 832 S-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNM--SENKTMTLT--AHEGLIAALAV 893 (913)
Q Consensus 832 ~-~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~I~iwd~--~~~~~~~~~--~h~~~V~~l~~ 893 (913)
. ....+.....++..-..+.|++++++|+++..++ .|.+|.+ .+|++..+. .......||.|
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEE
Confidence 2 3444455555566678899999999999998875 7888765 455554222 23344555555
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-11 Score=125.99 Aligned_cols=226 Identities=17% Similarity=0.234 Sum_probs=140.4
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
-.+| ..|+++.|.+||..|++++. |..|.|||.+++..+.......+.++-+.|+||+.+|+++..|+..++|.....
T Consensus 192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~ 270 (445)
T KOG2139|consen 192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS 270 (445)
T ss_pred CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccc
Confidence 3455 78999999999999999885 568999999998877766566778999999999999999999999999976542
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEEC
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDA 787 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~ 787 (913)
....+-. -..+.|...+|+|+|..+|++++..-.|+-........+ +.+ .++......+-|+
T Consensus 271 wt~erw~-lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~--~~~---------------~~~~k~~lliaDL 332 (445)
T KOG2139|consen 271 WTKERWI-LGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSV--FLR---------------PQSIKRVLLIADL 332 (445)
T ss_pred ceeccee-ccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCcc--ccC---------------cccceeeeeeccc
Confidence 3333333 344589999999999999988875554443322211111 100 0011111222233
Q ss_pred CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---------eEEEEECCCCCCCceEEEeecCCCceEEEEEeC---C
Q 002519 788 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP---T 855 (913)
Q Consensus 788 ~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d---------~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp---~ 855 (913)
..-....--+--.+.+.+++|+|.|++|++.-.+ .|.+||.+..........-...+..-..++|+| +
T Consensus 333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~ 412 (445)
T KOG2139|consen 333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNE 412 (445)
T ss_pred hhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccC
Confidence 2111000001123678899999999999987655 255677654322111110011112233445554 4
Q ss_pred CCEEEEEEcCCeEEEEEC
Q 002519 856 YPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 856 g~~l~s~s~dg~I~iwd~ 873 (913)
+.+|.++-..|.|.-|++
T Consensus 413 g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 413 GRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred CcEEEEEeccCceEeeee
Confidence 555666666677666654
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.1e-13 Score=141.91 Aligned_cols=228 Identities=15% Similarity=0.187 Sum_probs=182.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee
Q 002519 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 754 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~ 754 (913)
.-.-..+.|+.+|+.|+.|+..|.|..+|..+ +.....+. -...|.++.|..+.. +| +..-...++|||-. |..+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t-~~L~~Ei~-v~Etv~Dv~~LHneq-~~-AVAQK~y~yvYD~~-GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT-KKLHFEIN-VMETVRDVTFLHNEQ-FF-AVAQKKYVYVYDNN-GTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeeccc-ceeeeeee-hhhhhhhhhhhcchH-HH-HhhhhceEEEecCC-CcEE
Confidence 34457889999999999999999999999998 44444443 456788999987644 55 34457889999965 5555
Q ss_pred EEee--CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002519 755 RVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 831 (913)
Q Consensus 755 ~~~~--~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~ 831 (913)
..++ ..+..+.|.|..-.+++++..|.++.-|+.+|+.+..+..-.+.+..++-+|-+.++-+|..+ +|.+|.-.+.
T Consensus 204 HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 5554 356778899987777777888999999999999999998888899999999998888888888 9999998765
Q ss_pred CCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002519 832 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVK 910 (913)
Q Consensus 832 ~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~ 910 (913)
..+..+-+|.++|.++++.++|.++++++.|..|+|||++....+ ++.. ......++||..| +|| ++....|.
T Consensus 284 ---ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA-~~~G~~v~ 357 (545)
T KOG1272|consen 284 ---EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLA-LSYGDHVQ 357 (545)
T ss_pred ---chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-cee-eecCCeee
Confidence 666777889999999999999999999999999999999987755 3333 5567778887766 333 44455788
Q ss_pred EeC
Q 002519 911 LWK 913 (913)
Q Consensus 911 IWd 913 (913)
||+
T Consensus 358 iw~ 360 (545)
T KOG1272|consen 358 IWK 360 (545)
T ss_pred eeh
Confidence 985
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=144.77 Aligned_cols=264 Identities=17% Similarity=0.219 Sum_probs=184.6
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec------cCC--CCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE------EHS--SLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~------~h~--~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
|-+.+.+..+-. +||++|. .-.|.+||+..+..+..+. .|. +.+. -.+.+++++..-+.+.+=+
T Consensus 6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~-----l~~~~~v~~~~~~~v~~~~ 77 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK-----LLSGKIVTCAKSDEVYVKE 77 (967)
T ss_pred ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce-----eccceEEEEEeecceeecc
Confidence 344566666544 4666654 4579999999876655443 330 0010 1233555555444343333
Q ss_pred cCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceE-------EEEecCCCEEEEE
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-------MRFQPHLGRYLAA 776 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~-------v~~s~~~~~ll~~ 776 (913)
... .....+ .+.|....+.-+.. .++.+..+..+.+||...+...........+ +-++++.-+++++
T Consensus 78 ~~~--~~~~~~---s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~g 151 (967)
T KOG0974|consen 78 ASN--QIIERF---SDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASG 151 (967)
T ss_pred hhh--hhhhhc---cccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEec
Confidence 221 112222 23333344444444 4456677899999999888766655443322 2234454567777
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCC
Q 002519 777 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 855 (913)
Q Consensus 777 ~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~ 855 (913)
+.-+.|.+|+....+.-..+.+|++.|.++.|+.||++++++++| ++|+|++.+.+... ...-+|...+..|+|+|+
T Consensus 152 sv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n 229 (967)
T KOG0974|consen 152 SVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN 229 (967)
T ss_pred cccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc
Confidence 778999999988554444789999999999999999999999999 99999998875443 355578899999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEEEEcccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 856 YPSLLVIGCYQSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 856 g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~-~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
++++++.|.+.++|+........+..|. ..|+.++..++.-.++|++.||.|++|+
T Consensus 230 --~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 230 --RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred --eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 8999999999999987766666777775 5799999999999999999999999996
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.4e-11 Score=121.46 Aligned_cols=108 Identities=23% Similarity=0.477 Sum_probs=86.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEe--CC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEE
Q 002519 799 HTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWN 872 (913)
Q Consensus 799 h~~~V~sl~~spdg~~l~s~s--~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd 872 (913)
..++|.+++|+|+|+.|++.. .+ .|.+||++ ...+..+. ...+..+.|+|+|++|++++.+ |.|.+||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~----~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK----GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc----ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 345799999999999766553 34 89999995 24555543 5677899999999999999854 5799999
Q ss_pred CCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC------CCcEEEeC
Q 002519 873 MSENKTMTLTAHEGLIAALAVSTETGYVASASH------DKFVKLWK 913 (913)
Q Consensus 873 ~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~------DG~I~IWd 913 (913)
+.+.+.+....|.. +..++|+|||++|+++.. |..++||+
T Consensus 132 ~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 132 VRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 99888886666654 789999999999999874 77888885
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.8e-10 Score=127.66 Aligned_cols=236 Identities=16% Similarity=0.148 Sum_probs=154.6
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCE--E-EEEeCCC--eEEEEEcCCCCceeEEeccCCCCeEEEEEcCC
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR--L-ATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 729 (913)
Q Consensus 655 g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~--L-asgs~Dg--~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~ 729 (913)
+.|.+.|.+.+. ...+......+.+-+|+|||+. + ++...+| .|.+.++.++ . .+.+....+......|+||
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g-~-~~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP-A-GKKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC-C-ceEeecCCCCccceEECCC
Confidence 357777776544 3445555666788899999975 3 2444444 5777788763 2 2233334445566899999
Q ss_pred CCeEEEEEeCCC----cEEEEEcCCC---eeeEEeeC---CceEEEEecCCCEEEEEEc-CCe--EEEEECCC-CeEEEE
Q 002519 730 KDDLICSCDGDG----EIRYWSINNG---SCTRVFKG---GTAQMRFQPHLGRYLAAAA-ENV--VSILDAET-QACRLS 795 (913)
Q Consensus 730 ~~~ll~sgs~Dg----~I~iwdl~~~---~~~~~~~~---~~~~v~~s~~~~~ll~~~~-dg~--I~i~D~~t-~~~~~~ 795 (913)
|+.++++...+| .+.+|++..+ +....... .....+|+|++..++..+. ++. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 998887765444 3444776653 32333322 2356899999998887764 554 55555542 233444
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeE
Q 002519 796 LQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSL 868 (913)
Q Consensus 796 l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I 868 (913)
+..+...+...+|+|||++|+..+.+ .|.+||+.++.. ..+......+....|+|||+.|+....+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 54455667889999999988766542 699999987632 2222223456778999999988876543 479
Q ss_pred EEEECCCCcEEEEcccCCCeEEEEEeCCC
Q 002519 869 ELWNMSENKTMTLTAHEGLIAALAVSTET 897 (913)
Q Consensus 869 ~iwd~~~~~~~~~~~h~~~V~~l~~spdg 897 (913)
++||+.+++...+....+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999998887776666777888888753
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.3e-11 Score=119.74 Aligned_cols=148 Identities=13% Similarity=0.278 Sum_probs=110.5
Q ss_pred EEEEECCCCCEEEEEeC----------CCeEEEEEcCCCCceeEEecc-CCCCeEEEEEcCCCCeEEEE-EeCCCcEEEE
Q 002519 679 TDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICS-CDGDGEIRYW 746 (913)
Q Consensus 679 ~~l~fspdg~~Lasgs~----------Dg~V~Iwdl~~~~~~~~~~~~-h~~~V~sl~fsp~~~~ll~s-gs~Dg~I~iw 746 (913)
..+.|+++|++|++-.. -+...||.++.....+..+.- ..+.|.+++|+|+++.++++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987755433 134666666544444444432 34579999999999887544 5567899999
Q ss_pred EcCCCeeeEEee-CCceEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC--
Q 002519 747 SINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-- 820 (913)
Q Consensus 747 dl~~~~~~~~~~-~~~~~v~~s~~~~~ll~~~~d---g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~-- 820 (913)
|++ ++.+..+. .....+.|+|+|..+++++.+ |.|.+||.++.+.+..+. | ..++.++|+|+|++|+++..
T Consensus 89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEecc
Confidence 997 55555554 456789999999999998753 679999999988887765 3 34789999999999998763
Q ss_pred ----C-eEEEEECC
Q 002519 821 ----D-SVRVWTVG 829 (913)
Q Consensus 821 ----d-~I~vwdl~ 829 (913)
| .++||++.
T Consensus 166 r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQ 179 (194)
T ss_pred ceeccccEEEEEec
Confidence 4 78999984
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-10 Score=131.44 Aligned_cols=218 Identities=19% Similarity=0.257 Sum_probs=143.5
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCC-C--cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEE-EeCCCe--EEE
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHD-K--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKT--VRV 701 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~D-g--~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg~--V~I 701 (913)
.+..+...+.+..|+|||+.|+..+.+ + .|++||+.+++... +....+.....+|+|||+.|+. .+.+|. |++
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 445567788999999999999877543 2 58899998876432 3322334557899999998865 455665 777
Q ss_pred EEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc--EEEEEcCCCeeeEEe-eCC-ceEEEEecCCCEEEEEE
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVF-KGG-TAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~--I~iwdl~~~~~~~~~-~~~-~~~v~~s~~~~~ll~~~ 777 (913)
||+++ + ....+..+...+...+|+||++.++++...++. |+++|+.+++..... .+. .....|+|+++.++...
T Consensus 291 ~dl~t-g-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIAT-K-ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCC-C-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 78775 3 344455555667789999999988877765554 666777777654432 222 23468999999888876
Q ss_pred cC-C--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEE
Q 002519 778 AE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSC 850 (913)
Q Consensus 778 ~d-g--~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l 850 (913)
.+ + .|.++|+.+++... +... .......|+|+|+.|+..+.+ .+++++.. + .....+......+...
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G---~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G---RFKARLPAGQGEVKSP 442 (448)
T ss_pred ecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-C---CceEECcCCCCCcCCC
Confidence 53 3 56678888876543 2222 122345899999977665543 46777763 2 2333344444556666
Q ss_pred EEeC
Q 002519 851 VFHP 854 (913)
Q Consensus 851 ~~sp 854 (913)
+|+|
T Consensus 443 ~Wsp 446 (448)
T PRK04792 443 AWSP 446 (448)
T ss_pred ccCC
Confidence 7776
|
|
| >KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.8e-13 Score=131.95 Aligned_cols=66 Identities=32% Similarity=0.752 Sum_probs=58.0
Q ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCCCCccCCCCCCchhHhHHHHHHHHHHhhccch
Q 002519 5 NWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKH 71 (913)
Q Consensus 5 ~~~~~~~l~~yiydyl~~~~~~~~a~a~~~e~~~~~~~~~~d~~~~fL~eWw~~fWdi~~a~~~~~~ 71 (913)
.-.|||.|..||||||++-++.++|+.|+.|-.+..+ ..+..+.+||.+|||||||+|.|...++.
T Consensus 13 d~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd 78 (354)
T KOG4594|consen 13 DSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRD 78 (354)
T ss_pred chhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccC
Confidence 3468999999999999999999999999999887655 66788999999999999999988765543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.2e-10 Score=130.33 Aligned_cols=220 Identities=19% Similarity=0.215 Sum_probs=147.6
Q ss_pred eeEeecCCCCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEE-EeCCC--eE
Q 002519 626 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDK--TV 699 (913)
Q Consensus 626 ~~~l~~H~~~V~~l~fspdg~~Lasgs~D---g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg--~V 699 (913)
...+..+...+...+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+. .+.+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 34555677889999999999999887644 369999998876533 3334445667999999998874 44455 58
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCC--cEEEEEcCCCeeeEEee-C-CceEEEEecCCCEEEE
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFK-G-GTAQMRFQPHLGRYLA 775 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg--~I~iwdl~~~~~~~~~~-~-~~~~v~~s~~~~~ll~ 775 (913)
++||+++ +. ...+..+........|+|+++.++++...++ .|+++|+.+++...... + ......|+|+++.++.
T Consensus 270 y~~d~~~-~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 270 YVMDLAS-RQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEECCC-CC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 8889886 33 3445556666777899999998887765554 57778887776544322 2 2334689999999888
Q ss_pred EEcC-C--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceE
Q 002519 776 AAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFH 848 (913)
Q Consensus 776 ~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~ 848 (913)
...+ + .|.+||+.+++...... ........|+|||++|+..+.+ .|.++++... ....+....+.+.
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~ 421 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVR 421 (430)
T ss_pred EEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcC
Confidence 7753 3 58889998876543222 2223356899999977766543 4667776432 2223333344555
Q ss_pred EEEEeC
Q 002519 849 SCVFHP 854 (913)
Q Consensus 849 ~l~~sp 854 (913)
..+|+|
T Consensus 422 ~p~ws~ 427 (430)
T PRK00178 422 EPSWSP 427 (430)
T ss_pred CCccCC
Confidence 666665
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.5e-10 Score=128.28 Aligned_cols=202 Identities=16% Similarity=0.238 Sum_probs=143.6
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCeeeEE--eeCCceEEEEecCCCEE
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRY 773 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D--g~I~iwdl~~~~~~~~--~~~~~~~v~~s~~~~~l 773 (913)
.|.++|.+. ...+.+..+...+.+.+|+|+++.++++...+ ..|++||+.+++.... +.+....++|+|++..+
T Consensus 171 ~l~~~d~~g--~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDG--ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCC--CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 577888753 33455556777889999999999887665433 5799999998754433 33455678999999888
Q ss_pred EEEEc-C--CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCc
Q 002519 774 LAAAA-E--NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 846 (913)
Q Consensus 774 l~~~~-d--g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~ 846 (913)
++... + ..|++||+.++... .+..+........|+|+|+.|+.++.. .|++||+.++. ...+..+...
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~~ 323 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGGY 323 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCCC
Confidence 76543 3 36899999887543 344454555678999999987766543 57888876542 2233334556
Q ss_pred eEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 002519 847 FHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 907 (913)
Q Consensus 847 i~~l~~sp~g~~l~s~s~dg---~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG 907 (913)
+....|+|++++|+.++.++ .|.+||+.++....+... .......|+||+++|+.++.++
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 67889999999999988876 899999988766544433 2345668999999888877654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.2e-10 Score=122.17 Aligned_cols=246 Identities=13% Similarity=0.227 Sum_probs=167.4
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEE-----EeCCCeEEEEEcCCCCc
Q 002519 637 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLAT-----SSFDKTVRVWDADNPGY 709 (913)
Q Consensus 637 ~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Las-----gs~Dg~V~Iwdl~~~~~ 709 (913)
+++.|+.|..+.|- -..+.|.+|++.+.+.+ .-+-|...|+.+.++|... .||+ .+.-+.||||.+...+.
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 68999998754432 23567999999874432 2234678899999999743 3332 24456799998863211
Q ss_pred ----eeEEeccCCCCeEEEEEcCCCCeEEEEEeC--C---------CcEEEEEcCCCeeeEEe--eCCceEEEEecCCCE
Q 002519 710 ----SLRTFMGHSASVMSLDFHPNKDDLICSCDG--D---------GEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGR 772 (913)
Q Consensus 710 ----~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~--D---------g~I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ 772 (913)
..++|. ...=..+.|++-+.-||+.++. | .+++++++...++...+ .+.+.++.|++++..
T Consensus 207 ~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 207 HQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 112222 1222347888887777655432 2 46888888855555554 468899999999987
Q ss_pred EEEEEc--CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCc
Q 002519 773 YLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 846 (913)
Q Consensus 773 ll~~~~--dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~ 846 (913)
++++.. -..+.|||++. ++++.+ .+++-+++-|+|.|++|+.++-+ .|.|||+.+. +++..+.. ..
T Consensus 285 F~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a--~~ 356 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKA--AN 356 (566)
T ss_pred EEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---hhcccccc--CC
Confidence 766554 67899999874 455544 35677888999999998888866 7999999764 55555543 34
Q ss_pred eEEEEEeCCCCEEEEEEc------CCeEEEEECCCCcEEEEcccCCCeEEEEEeC
Q 002519 847 FHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTMTLTAHEGLIAALAVST 895 (913)
Q Consensus 847 i~~l~~sp~g~~l~s~s~------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp 895 (913)
.+.+.|+|||.+|+++++ |+.++||++....+... .....++.++|-|
T Consensus 357 tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~-~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK-MFKSELLQVEWRP 410 (566)
T ss_pred ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh-hhhHhHhheeeee
Confidence 567899999999999986 57899999876544311 1111566677765
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-09 Score=125.85 Aligned_cols=212 Identities=12% Similarity=0.114 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCe--EEEEEeCCC--cEEEEEcCCCee--eEEeeCCceEEEEecCCC
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDG--EIRYWSINNGSC--TRVFKGGTAQMRFQPHLG 771 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~--ll~sgs~Dg--~I~iwdl~~~~~--~~~~~~~~~~v~~s~~~~ 771 (913)
.|.+.|.+. ...+.+......+.+-+|+|||+. ++++...+| .|++.++.+++. +..+.+......|+|++.
T Consensus 166 ~l~~~d~dG--~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDG--QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCC--CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 566666653 334445555666778899999986 333444443 588888887754 334556666789999999
Q ss_pred EEEEEEc-CC----eEEEEECCCC---eEEEEecCCCCCeEEEEEcCCCCEEEEEeC-C---eEEEEECCCCCCCceEEE
Q 002519 772 RYLAAAA-EN----VVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSE-D---SVRVWTVGSGSEGECVHE 839 (913)
Q Consensus 772 ~ll~~~~-dg----~I~i~D~~t~---~~~~~l~~h~~~V~sl~~spdg~~l~s~s~-d---~I~vwdl~~~~~~~~i~~ 839 (913)
.++.... +| .+.+|++..+ +.......+.......+|+|||+.|+..+. + .|.++++.... .....
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~ 321 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRL 321 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEE
Confidence 9887764 22 3444676652 333333333334567899999997776663 3 35555553211 12333
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeC-C--CcEEEeC
Q 002519 840 LSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH-D--KFVKLWK 913 (913)
Q Consensus 840 ~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~-D--G~I~IWd 913 (913)
+......+....|+|||+.|+..+.+ ..|++||+.+++...+......+....|+|||++|+.... + ..|++||
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 33344566788999999999887654 3799999999988776655567788999999998775443 2 3455553
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.2e-10 Score=119.88 Aligned_cols=273 Identities=15% Similarity=0.180 Sum_probs=189.0
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCC----------
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK---------- 697 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg---------- 697 (913)
.+..-.-+|..++|||.|++|++.... .|.+|+...+..+..+. ...|..+.|+|+++||++-+...
T Consensus 27 ~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp 103 (561)
T COG5354 27 RFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISP 103 (561)
T ss_pred cccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCC
Confidence 344456789999999999999987655 48999988777555554 24599999999999999876543
Q ss_pred -----eEEEEEcCCCCceeEEeccCCCC--eE-EEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----eEEee-CCceEE
Q 002519 698 -----TVRVWDADNPGYSLRTFMGHSAS--VM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFK-GGTAQM 764 (913)
Q Consensus 698 -----~V~Iwdl~~~~~~~~~~~~h~~~--V~-sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~-~~~~~v 764 (913)
.+.|||+.+ +..+..+.....+ .+ -+.|+-++...+-. ....++|+++ +... .+.++ .++...
T Consensus 104 ~~~~n~~~vwd~~s-g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dF 179 (561)
T COG5354 104 FTSKNNVFVWDIAS-GMIVFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLRPVGILDF 179 (561)
T ss_pred ccccCceeEEeccC-ceeEeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhccccceeeE
Confidence 499999998 7788888776655 44 57788776543322 3467899997 3321 12222 466677
Q ss_pred EEecCCC--EEEEE-----EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe------------CCeEEE
Q 002519 765 RFQPHLG--RYLAA-----AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS------------EDSVRV 825 (913)
Q Consensus 765 ~~s~~~~--~ll~~-----~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s------------~d~I~v 825 (913)
.|+|.++ .+++- ...+.++||.+..+..+.+..-....-..+.|.+.|++|++-- +..++|
T Consensus 180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence 7888743 22222 2357899999887766554433333445788999999766431 125788
Q ss_pred EECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEc--CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE
Q 002519 826 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC--YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASA 903 (913)
Q Consensus 826 wdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~--dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 903 (913)
+++... .+.......++|+.++|.|.++.+++++. .-.+.++|++.+ +.+......=+.+.|+|.+++++.+
T Consensus 260 ~~~~e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~a 333 (561)
T COG5354 260 LRITER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFA 333 (561)
T ss_pred Eeeccc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEe
Confidence 888632 22222244789999999999998887774 458999999887 4444555556677888888888887
Q ss_pred eCC---CcEEEeC
Q 002519 904 SHD---KFVKLWK 913 (913)
Q Consensus 904 s~D---G~I~IWd 913 (913)
+-| |.|.|||
T Consensus 334 gF~nl~gni~i~~ 346 (561)
T COG5354 334 GFDNLQGNIEIFD 346 (561)
T ss_pred cCCccccceEEec
Confidence 765 5677775
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-10 Score=115.40 Aligned_cols=242 Identities=19% Similarity=0.220 Sum_probs=168.5
Q ss_pred cCCCCEEEEEEec---CCC-EEEEEeCCCcEEEEECCCCceeeEeccCC------CCeEEEEECCCCCEEEEEeCCCeEE
Q 002519 631 ASTSKVICCHFSS---DGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHS------SLITDVRFSPSMPRLATSSFDKTVR 700 (913)
Q Consensus 631 ~H~~~V~~l~fsp---dg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~------~~V~~l~fspdg~~Lasgs~Dg~V~ 700 (913)
..+..+..+.|.. +|. .|+-+..+|.|.+|..........+++-+ ....++.|++.+..++++-.+|.+.
T Consensus 67 ~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~ 146 (339)
T KOG0280|consen 67 TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSIS 146 (339)
T ss_pred ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEE
Confidence 3455677777764 455 66677788999999877555554444321 1355788999999999999999998
Q ss_pred EEEcCC-CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcC
Q 002519 701 VWDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 701 Iwdl~~-~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~d 779 (913)
+-+... .-+.+..++.|..+++...|+....+++++|++|+.+..||++..+ ..
T Consensus 147 ~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~------------------------ 201 (339)
T KOG0280|consen 147 GVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TF------------------------ 201 (339)
T ss_pred EEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ce------------------------
Confidence 555443 1123447889999999999998888899999999999999998322 00
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 002519 780 NVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 857 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp-dg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~ 857 (913)
+|. ..+.|...|.+|.-+| .+.+|++|+.| .|++||.|+-. +.+..-.. .+.|+.+.++|.-.
T Consensus 202 ----i~~--------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--kPl~~~~v-~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 202 ----IWH--------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--KPLFKAKV-GGGVWRIKHHPEIF 266 (339)
T ss_pred ----eee--------cceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--CccccCcc-ccceEEEEecchhh
Confidence 110 1233777888888776 46699999999 99999998543 33333222 47899999998543
Q ss_pred -EEEEEEcCCeEEEEECCCCcE------EEEcccCCCeEEEEEeCCCCEEEEEe-CCCcEE-Ee
Q 002519 858 -SLLVIGCYQSLELWNMSENKT------MTLTAHEGLIAALAVSTETGYVASAS-HDKFVK-LW 912 (913)
Q Consensus 858 -~l~s~s~dg~I~iwd~~~~~~------~~~~~h~~~V~~l~~spdg~~Lasgs-~DG~I~-IW 912 (913)
.+++++..+..+|-++..+.. .....|.+-+..-.|.....+|+||+ .|+.|+ +|
T Consensus 267 ~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 267 HRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred hHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 344445555566666654422 14567888888888865556889876 577755 77
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.2e-10 Score=123.19 Aligned_cols=184 Identities=18% Similarity=0.278 Sum_probs=146.9
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeEecc---CCCCeEEEEEC------C--------------CCCEEEEEeCCCeE
Q 002519 643 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE---HSSLITDVRFS------P--------------SMPRLATSSFDKTV 699 (913)
Q Consensus 643 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~---h~~~V~~l~fs------p--------------dg~~Lasgs~Dg~V 699 (913)
+-..++|....||.++|||+.+++....|.. -++..++..|. | |...|+-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4557999999999999999998877666542 23445555552 2 34467888889999
Q ss_pred EEEEcCCCCceeEEec--cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC---CceEEEEecCCCEEE
Q 002519 700 RVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 774 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~--~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~s~~~~~ll 774 (913)
.+|++.. +.....+. .|.+.|.++.++.+-. .|.+++.|+.|.+|+...+..++.++. ....++++++++.++
T Consensus 83 ~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAG-GEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecC-CeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 9999987 55555444 6999999999987755 566999999999999999999888875 356799999988777
Q ss_pred EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC-----CCEEEEEeCC--eEEEEECCC
Q 002519 775 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-----GELLASVSED--SVRVWTVGS 830 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd-----g~~l~s~s~d--~I~vwdl~~ 830 (913)
+++ +.|.+||+++++.+.+|.+|.++|+++.|.-+ |.+|+++... .+.+|-+..
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 654 68999999999999999999999999999876 7777665543 778887765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.9e-10 Score=124.15 Aligned_cols=274 Identities=19% Similarity=0.270 Sum_probs=196.8
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC---------------ceeeEeccCCCCeEEEEECCCCCEEEEEeCC
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---------------KSKTNLEEHSSLITDVRFSPSMPRLATSSFD 696 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~---------------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D 696 (913)
......|++|+....++|+|+.||.++|..+.+. ..-.+++||+..|.-+.|+.+...|-|+..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4557899999999999999999999999987632 1224678999999999999999999999999
Q ss_pred CeEEEEEcCCCCceeEEe-ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-EEeeC-CceEEEEecCCCEE
Q 002519 697 KTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFKG-GTAQMRFQPHLGRY 773 (913)
Q Consensus 697 g~V~Iwdl~~~~~~~~~~-~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~-~~~~~-~~~~v~~s~~~~~l 773 (913)
|.|.||-+-.+..+-..+ ...++.|.+++|..+|.. |+....||.|.+=.++..+.. +.+++ ....+.|+++...+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 999999998744433222 234567899999999875 457788998888777654432 22333 23467899999989
Q ss_pred EEEEcCCeEEEEECCCC-------eEEEEe----cCCCCCeEEEEEc--------CCCCEEEEEeCC-eEEEEECCCCCC
Q 002519 774 LAAAAENVVSILDAETQ-------ACRLSL----QGHTKPIDSVCWD--------PSGELLASVSED-SVRVWTVGSGSE 833 (913)
Q Consensus 774 l~~~~dg~I~i~D~~t~-------~~~~~l----~~h~~~V~sl~~s--------pdg~~l~s~s~d-~I~vwdl~~~~~ 833 (913)
+.+-..|.+.+||.... .+.... ......|-.++|. |+...|+++..+ .+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 98888999999997642 121111 1122336666664 366678877776 666655443333
Q ss_pred CceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---------eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 002519 834 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---------SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 904 (913)
Q Consensus 834 ~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---------~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 904 (913)
+..+.+ +-.+..+.|+++|..|++++.+. .|.+|..-....-++......|++++|-..|-.+|.+-
T Consensus 252 Pvv~dt----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 252 PVVVDT----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred CeEEec----ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEEe
Confidence 222222 56788899999999999998753 67777665555557788888999999987776666553
Q ss_pred CCCcEEE
Q 002519 905 HDKFVKL 911 (913)
Q Consensus 905 ~DG~I~I 911 (913)
|+.|++
T Consensus 328 -dsfiyf 333 (1189)
T KOG2041|consen 328 -DSFIYF 333 (1189)
T ss_pred -cceEEE
Confidence 555554
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-08 Score=110.04 Aligned_cols=247 Identities=11% Similarity=0.083 Sum_probs=154.8
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeC----------CCcEEEEECCCCceeeEeccCCC-------CeEEEEEC
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFS 684 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~----------Dg~V~vwd~~~~~~~~~l~~h~~-------~V~~l~fs 684 (913)
+.+.+..+.....+-. + +||||+.|+++.. +..|.|||+.+++.+..+..... ....++++
T Consensus 36 ~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls 113 (352)
T TIGR02658 36 AGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT 113 (352)
T ss_pred CCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC
Confidence 4556666665444333 4 9999998887765 78999999999999988875322 34478999
Q ss_pred CCCCEEEEEeC--CCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-Cee-e---EEe
Q 002519 685 PSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSC-T---RVF 757 (913)
Q Consensus 685 pdg~~Lasgs~--Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~-~~~-~---~~~ 757 (913)
|||++|++... +..|.|+|+.+ ++.+..+.-. +...-+..+.+ .++ +-+.||......+.+ ++. . ..|
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~-~kvv~ei~vp-~~~~vy~t~e~-~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEG-KAFVRMMDVP-DCYHIFPTAND-TFF--MHCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCC-CcEEEEEeCC-CCcEEEEecCC-ccE--EEeecCceEEEEecCCCceEEeeeeee
Confidence 99999998763 68999999998 5556555431 11111222211 111 112244443333322 111 1 111
Q ss_pred eCCc----eEEEEec-CCCEEEEEEcCCeEEEEECCCC-----eEEEEecC-------CCCCeEEEEEcCCCCEEEEEe-
Q 002519 758 KGGT----AQMRFQP-HLGRYLAAAAENVVSILDAETQ-----ACRLSLQG-------HTKPIDSVCWDPSGELLASVS- 819 (913)
Q Consensus 758 ~~~~----~~v~~s~-~~~~ll~~~~dg~I~i~D~~t~-----~~~~~l~~-------h~~~V~sl~~spdg~~l~s~s- 819 (913)
.... ..-.|.+ ++..+++ +.+|.|++.|+... +....+.. ....+.-++++++++.+++..
T Consensus 189 ~~~~~~v~~rP~~~~~dg~~~~v-s~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSGRLVWP-TYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred cCCccccccCCceEcCCCcEEEE-ecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence 1100 0013455 5544544 44599999995443 33332221 123344599999999777642
Q ss_pred ---------C-CeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEE
Q 002519 820 ---------E-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMT 880 (913)
Q Consensus 820 ---------~-d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~-~l~s~s-~dg~I~iwd~~~~~~~~ 880 (913)
. +.|.++|..++ +.+..+.. +..+..+++++|++ +|++.. .++.|.++|..+++.+.
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CCccccccCCCCEEEEEECCCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 1 37999999776 55555554 66899999999999 777776 46889999999998873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.2e-11 Score=128.70 Aligned_cols=278 Identities=18% Similarity=0.225 Sum_probs=188.2
Q ss_pred eeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC-------CceeeEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 697 (913)
Q Consensus 625 ~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~-------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 697 (913)
.+..+.+|...|+.++--.+.+.+++++.|++|++|.++. ..+..++..|+.+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 3446789999999998888888999999999999999862 34667888999999999999998888766 78
Q ss_pred eEEEEEcCCCCceeEEec--cCCCCeEEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeeeEEee--------CCceEEE
Q 002519 698 TVRVWDADNPGYSLRTFM--GHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFK--------GGTAQMR 765 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~--~h~~~V~sl~fsp~--~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--------~~~~~v~ 765 (913)
-|.+||.-- +..+.... ...+.+..|...++ ...+++.|+...+|+++|.+....+..++ +-+.+++
T Consensus 805 giHlWDPFi-gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFI-GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccc-cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 899999765 33322111 11222333333333 33345555889999999999887665543 2346788
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEE-EECCCCCCCceEEEeecC
Q 002519 766 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV-WTVGSGSEGECVHELSCN 843 (913)
Q Consensus 766 ~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~v-wdl~~~~~~~~i~~~~~~ 843 (913)
+.+.|++++++-+.|+|.+.|.++|+.+...+.-+.....++ .|....|+....| ++.| |....+ ......+..
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg---imh~q~kpp 959 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG---IMHLQDKPP 959 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC---eeeeccCCC
Confidence 999999999999999999999999998887665444444343 3455566666666 7777 765443 111111111
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-------cEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 844 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN-------KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 844 ~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~-------~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
..+.. -.-.-|..+++......+.||.-... ..+.-....+..++++.-|-+.-+..|+..|.|.+
T Consensus 960 pepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 960 PEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred Ccchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 11111 11224566777777778888843211 11223345677888888887777777888888876
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.5e-11 Score=133.37 Aligned_cols=278 Identities=16% Similarity=0.302 Sum_probs=195.9
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceeeEecc-CCCCeEEEEECCCCC--EEEEEeCCCeEEEEEcCCC-
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEE-HSSLITDVRFSPSMP--RLATSSFDKTVRVWDADNP- 707 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~-h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwdl~~~- 707 (913)
.+.+.++.++|.|+-+|.++.-| +.+.|++ .+...+-+.. ..-.|-++.|++... +-++......-.||++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 45788899999999999998776 4556666 3444443332 223477888887533 4444444555678988642
Q ss_pred -CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-eEE---eeCCceEEEEecCCCEEEEEEcCCeE
Q 002519 708 -GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRV---FKGGTAQMRFQPHLGRYLAAAAENVV 782 (913)
Q Consensus 708 -~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-~~~---~~~~~~~v~~s~~~~~ll~~~~dg~I 782 (913)
..+-..+.+|...|+.+.|+|....++++|+.|-.|..||+++... +.. .......+.|+.....+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 3344566799999999999999999999999999999999997642 222 34567789999999999999999999
Q ss_pred EEEECCCC-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEE
Q 002519 783 SILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 859 (913)
Q Consensus 783 ~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg-~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l 859 (913)
++||.+.+ .++..+++|...|+++.|..-- ..+.+++.| +|++||.....+. -........+|..-.+-|-|+-.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e--~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE--SKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc--cceeccccCcceeccccccCcee
Confidence 99999987 7888999999999999997632 356677777 9999999754221 11112224566666666655433
Q ss_pred EEE-----------EcCCeEEEEECCCCc--EEEEcccCCCeEEEEEeCCC--------C--EEEEEeCCCcEEEeC
Q 002519 860 LVI-----------GCYQSLELWNMSENK--TMTLTAHEGLIAALAVSTET--------G--YVASASHDKFVKLWK 913 (913)
Q Consensus 860 ~s~-----------s~dg~I~iwd~~~~~--~~~~~~h~~~V~~l~~spdg--------~--~Lasgs~DG~I~IWd 913 (913)
++- -.++....|++.++. +.++.+|++.|..+.|-..+ + .|+|.+.|..+++|.
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 322 222233334443332 23889999999877774321 1 599999999999993
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-08 Score=106.39 Aligned_cols=259 Identities=11% Similarity=0.110 Sum_probs=177.4
Q ss_pred CCcEEEEECCCC--ce-eeEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEEcCCCCceeEEe---ccCCCCeEEE
Q 002519 654 DKKAVLWHTDTL--KS-KTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTF---MGHSASVMSL 724 (913)
Q Consensus 654 Dg~V~vwd~~~~--~~-~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~Iwdl~~~~~~~~~~---~~h~~~V~sl 724 (913)
+.-|++|++++. +. ...+-.+...++-|+|+++.++|+++-. +|.|..|.++.....+..+ ......-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 467999998832 21 1223346778999999999999998865 4788888887531222211 1122333779
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCC-CeeeEE---e--e----------CCceEEEEecCCCEEEEEEc-CCeEEEEEC
Q 002519 725 DFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---F--K----------GGTAQMRFQPHLGRYLAAAA-ENVVSILDA 787 (913)
Q Consensus 725 ~fsp~~~~ll~sgs~Dg~I~iwdl~~-~~~~~~---~--~----------~~~~~v~~s~~~~~ll~~~~-dg~I~i~D~ 787 (913)
+++++++.++++-...|.|.++-+.. |..... + . .+.....+.|++.+++++.- ...|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999988887777789999999965 332221 1 1 12556779999988888776 578999999
Q ss_pred CCCeEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC-CCCceEEEeec------CCCceEEEEEeCC
Q 002519 788 ETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG-SEGECVHELSC------NGNKFHSCVFHPT 855 (913)
Q Consensus 788 ~t~~~~~~l~---~h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~-~~~~~i~~~~~------~~~~i~~l~~sp~ 855 (913)
..++....-. .....-+.|.|+|++++.++.++= +|.+|.+... .+.+.+..+.. .......+.++++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9775433221 233456889999999987777653 9999999774 33334433322 2445778899999
Q ss_pred CCEEEEEEcC-CeEEEEECCC--CcEE---EEcccCCCeEEEEEeCCCCEEEEEeCC-CcEEEe
Q 002519 856 YPSLLVIGCY-QSLELWNMSE--NKTM---TLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 912 (913)
Q Consensus 856 g~~l~s~s~d-g~I~iwd~~~--~~~~---~~~~h~~~V~~l~~spdg~~Lasgs~D-G~I~IW 912 (913)
|++|+++... ..|.+|.+.. +++. ....+...-+.+.|++.+++|++++.| ..|.||
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 9998887654 4888887754 3332 233455568899999999999998865 457666
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.9e-09 Score=118.05 Aligned_cols=254 Identities=13% Similarity=0.066 Sum_probs=161.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCe--
Q 002519 644 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV-- 721 (913)
Q Consensus 644 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V-- 721 (913)
++..+++++.++.|+.||.++++.+............... .+..++.++.+|.|+.||.++ ++.+..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAAT-GERLWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCC-CceeeEEccCCCceee
Confidence 4667888889999999999999988766543221111122 245777788899999999987 55444443222111
Q ss_pred ---EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc----e------EEE--EecCCCEEEEEEcCCeEEEEE
Q 002519 722 ---MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----A------QMR--FQPHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 722 ---~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----~------~v~--~s~~~~~ll~~~~dg~I~i~D 786 (913)
.+..+. ++ .++.+..++.|..+|+++++.+....... . .+. ....++.+++++.++.++.||
T Consensus 181 ~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 181 RGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred cCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 111222 23 45577888999999999998765433110 0 000 111357888888899999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeec-CCCceEEEEEeCCCCEEEEEEc
Q 002519 787 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGC 864 (913)
Q Consensus 787 ~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~-~~~~i~~l~~sp~g~~l~s~s~ 864 (913)
.++++.+...... ...... .++..|++++.+ .|..+|..+++ .+..... ....+..... .+..|++++.
T Consensus 258 ~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~---~~W~~~~~~~~~~ssp~i--~g~~l~~~~~ 328 (377)
T TIGR03300 258 LRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGS---ELWKNDELKYRQLTAPAV--VGGYLVVGDF 328 (377)
T ss_pred CCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCc---EEEccccccCCccccCEE--ECCEEEEEeC
Confidence 9999888766521 112222 245566666666 99999998773 3333211 1111222222 4568999999
Q ss_pred CCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 865 YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 865 dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+|.|+++|..+++.+ .+..+...+..--...++ .|+.++.||.|+.|.
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAFR 377 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEeC
Confidence 999999999999988 444455443332222333 588899999998874
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.3e-10 Score=115.09 Aligned_cols=238 Identities=17% Similarity=0.258 Sum_probs=155.5
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc----eeEEeccC------------CCCeEEEEEcCCCCe-EEEE
Q 002519 674 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----SLRTFMGH------------SASVMSLDFHPNKDD-LICS 736 (913)
Q Consensus 674 h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~----~~~~~~~h------------~~~V~sl~fsp~~~~-ll~s 736 (913)
....|.+|.|...|.+||||+.+|.|.++.-+.... ....+..| ...|..|.|.++++. .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 345689999999999999999999999997664332 22333333 246888999886543 3446
Q ss_pred EeCCCcEEEEEcCCCeeeE-----------------------------------Ee----eCCceEEEEecCCCEEEEEE
Q 002519 737 CDGDGEIRYWSINNGSCTR-----------------------------------VF----KGGTAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 737 gs~Dg~I~iwdl~~~~~~~-----------------------------------~~----~~~~~~v~~s~~~~~ll~~~ 777 (913)
...|.+|++|.+....... .+ ..++.++.+..+...++ .+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec
Confidence 6789999999986432111 11 11345566666655544 45
Q ss_pred cCCeEEEEECCCCeE---EEEecCC-----CCCeEEEEEcCCCC--EEEEEeCCeEEEEECCCCCC-------------C
Q 002519 778 AENVVSILDAETQAC---RLSLQGH-----TKPIDSVCWDPSGE--LLASVSEDSVRVWTVGSGSE-------------G 834 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~---~~~l~~h-----~~~V~sl~~spdg~--~l~s~s~d~I~vwdl~~~~~-------------~ 834 (913)
.|=.|.+|.++-... +..++.+ ...|++..|+|... ++++.+.++|++.|++.... +
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 677899998875422 2222322 24588999999543 44555556999999984310 0
Q ss_pred ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC-CCc-EEEEcccC------------CCe---EEEEEeCCC
Q 002519 835 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS-ENK-TMTLTAHE------------GLI---AALAVSTET 897 (913)
Q Consensus 835 ~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~-~~~-~~~~~~h~------------~~V---~~l~~spdg 897 (913)
.....+..--..|..+.|+++|+++++-. .-+|+|||+. ..+ +.++.-|. ..| ..++|+-++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 11111112234578899999999887643 3699999984 333 33444433 223 457899999
Q ss_pred CEEEEEeCCCcEEEeC
Q 002519 898 GYVASASHDKFVKLWK 913 (913)
Q Consensus 898 ~~Lasgs~DG~I~IWd 913 (913)
.+++||+....+++|+
T Consensus 342 ~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFN 357 (433)
T ss_pred ceEecccccceEEEec
Confidence 9999999999999885
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.6e-10 Score=113.44 Aligned_cols=195 Identities=22% Similarity=0.240 Sum_probs=144.6
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee--EeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEEcCCCCcee
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~--~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
...++.|++.+.-++++..+|.+.+-+.......+ +++.|.-.++...|+.. .+++++|++|+.+..||++.++..+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 45678899999999999999999976666554444 88999999999999754 4588999999999999999655544
Q ss_pred EE-eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeeEE--eeCCceEEEEecCC-CEEEEEEcCCeEEEEE
Q 002519 712 RT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV--FKGGTAQMRFQPHL-GRYLAAAAENVVSILD 786 (913)
Q Consensus 712 ~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~-~~~~~~--~~~~~~~v~~s~~~-~~ll~~~~dg~I~i~D 786 (913)
.. .+-|...|.+|.-+|....+|++|+.|-.|++||.++ ++.+.. ..+++..+.++|.. ..+++++.-+..+|.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 44 5679999999999998888999999999999999984 454433 34678888888865 3556666666677776
Q ss_pred CCCC--e---EEEEecCCCCCeEEEEEcCCCCEEEEEeC-C-eEE-EEECC
Q 002519 787 AETQ--A---CRLSLQGHTKPIDSVCWDPSGELLASVSE-D-SVR-VWTVG 829 (913)
Q Consensus 787 ~~t~--~---~~~~l~~h~~~V~sl~~spdg~~l~s~s~-d-~I~-vwdl~ 829 (913)
...+ + .....+.|.+-+..-.|.....+|++|+- | .++ +|-.-
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeec
Confidence 6554 2 33445567666666677544457777652 3 433 66443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-08 Score=114.10 Aligned_cols=255 Identities=16% Similarity=0.116 Sum_probs=160.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEE
Q 002519 644 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 723 (913)
Q Consensus 644 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~s 723 (913)
.+..|++++.++.|+.+|..+++.+..+.........+.. ++..+++++.|+.|..+|.++ ++.+...... ..+.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~~-~~~~~ 139 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAED-GKELWRAKLS-SEVLS 139 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCC-CcEeeeeccC-ceeec
Confidence 3568888889999999999999988776654432223333 467888889999999999987 5544443322 22222
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEE------ecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 002519 724 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF------QPHLGRYLAAAAENVVSILDAETQACRLSLQ 797 (913)
Q Consensus 724 l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~------s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~ 797 (913)
.-.. .++.+ +.++.++.|+.||.++++.+..++.....+.+ ...++.++++..++.+..+|.++++.+....
T Consensus 140 ~p~v-~~~~v-~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 140 PPLV-ANGLV-VVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred CCEE-ECCEE-EEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 1111 13434 46777999999999999988776543221100 0123577778888999999999998776543
Q ss_pred CCCC----C---eEEEEEcC--CCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 002519 798 GHTK----P---IDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 867 (913)
Q Consensus 798 ~h~~----~---V~sl~~sp--dg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~ 867 (913)
.... . +..+.-+| .+..+++++.+ .++.||..+++ .+..... ...... ...+..|++++.+|.
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~---~~W~~~~--~~~~~p--~~~~~~vyv~~~~G~ 290 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR---VLWKRDA--SSYQGP--AVDDNRLYVTDADGV 290 (377)
T ss_pred cccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc---EEEeecc--CCccCc--eEeCCEEEEECCCCe
Confidence 2110 0 00010011 24456666666 99999998773 3333321 111112 234667888899999
Q ss_pred EEEEECCCCcEEEEc-ccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 868 LELWNMSENKTMTLT-AHE-GLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 868 I~iwd~~~~~~~~~~-~h~-~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|+.+|..+++.+... ... ..+..... .+.+|++++.||.|++||
T Consensus 291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 291 VVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred EEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 999999999876322 211 12222222 356888899999999875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-09 Score=128.14 Aligned_cols=194 Identities=13% Similarity=0.206 Sum_probs=151.1
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCC----eEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----ITDVRFSPSMPRLATSSFDKTVRVWDADNPG 708 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~----V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 708 (913)
.+.|....+.-+.+.++.++.+..+.+||...+.....+...... ..-+-++++.-++++|+.-+.|.+|+.....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 345555667777889999999999999999877766665543322 2223346677789999999999999998534
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE----eeCCceEEEEecCCCEEEEEEcCCeEEE
Q 002519 709 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKGGTAQMRFQPHLGRYLAAAAENVVSI 784 (913)
Q Consensus 709 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~----~~~~~~~v~~s~~~~~ll~~~~dg~I~i 784 (913)
... .+.+|.+.|.++.|+-+|. +++++++|.++|+|++++.+.... +...+..+++.+. .+++++.|-+.++
T Consensus 167 ~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 167 KPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred Ccc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEE
Confidence 433 6889999999999999876 566999999999999999876651 2334566778887 9999999999999
Q ss_pred EECCCCeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002519 785 LDAETQACRLSLQGHT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSG 831 (913)
Q Consensus 785 ~D~~t~~~~~~l~~h~-~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~ 831 (913)
|+.+.. .+..+.+|. +.|..++..++...+++++.| .+++||+...
T Consensus 243 W~~~~~-~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 243 WGVNGT-QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred Eecccc-eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 966543 333677775 469999999998899999999 9999998654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-08 Score=106.77 Aligned_cols=285 Identities=14% Similarity=0.144 Sum_probs=185.8
Q ss_pred CCCCcccccccCc-cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceeeEeccCCCCeEEEEECCC
Q 002519 609 DAGGRGMDVSQGF-SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPS 686 (913)
Q Consensus 609 d~~~~~~~~~~~~-~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~V~~l~fspd 686 (913)
.+.+++|....+- +|+.+-.+.+|-..-.-+ .++..+....||.=.||.++ .|+-++...... .-.+-..+.|
T Consensus 203 GtrGklWis~d~g~tFeK~vdl~~~vS~PmIV----~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt-dYY~R~~nsD 277 (668)
T COG4946 203 GTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV----GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT-DYYPRNANSD 277 (668)
T ss_pred CccceEEEEecCCcceeeeeecCCCcCCceEE----cceEEEEecccCccceEEeccCCchhhhcCCch-hccccccCCC
Confidence 3445566555543 777777777665432222 23334445567666666554 333322221111 1223344668
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEec-----cCC-----CCeEEEE-EcCCCCeEEEEEeCCCcEEEEEcCCCeeeE
Q 002519 687 MPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHS-----ASVMSLD-FHPNKDDLICSCDGDGEIRYWSINNGSCTR 755 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~-----~h~-----~~V~sl~-fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~ 755 (913)
|++|+..- .|.|.+||.++.......+. ... .+..-+. |++-...+++..+ -|...|.+...+-.+.
T Consensus 278 GkrIvFq~-~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq 355 (668)
T COG4946 278 GKRIVFQN-AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ 355 (668)
T ss_pred CcEEEEec-CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE
Confidence 88877653 57799999987432111111 000 1111111 4444444665555 5778888777665554
Q ss_pred Ee-eCCceEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002519 756 VF-KGGTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 832 (913)
Q Consensus 756 ~~-~~~~~~v~~s~~~~~ll~~~~dg-~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~ 832 (913)
.- ++++.-..+..+...++.+..|| .+-|||.++++... +...-+.|.++..+++|++++.+.+. .|.++|+.++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 43 34555666777777888888888 89999999887554 44456789999999999999988888 99999998873
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC----eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 002519 833 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 904 (913)
Q Consensus 833 ~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg----~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 904 (913)
....-+...+-|+.+.|||++++|+.+--+| .|+|||+.+++........+.=.+-+|.||+++|.--+
T Consensus 435 ---v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 435 ---VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ---eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 3333334467799999999999999987776 89999999999987776666667788999999876544
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-09 Score=121.01 Aligned_cols=201 Identities=15% Similarity=0.191 Sum_probs=145.3
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeEEecc---CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeeCC
Q 002519 685 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGG 760 (913)
Q Consensus 685 pdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~---h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~~~ 760 (913)
|-..++|....||.+||||... +.....|.. -.+..++..| .+.-+. +.+.. .-
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~-~~~~~e~~p~~~~s~t~~~~~w--------------------~L~~~~s~~k~~-~~ 60 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAK-NQLQQEFAPIASLSGTCTYTKW--------------------GLSADYSPMKWL-SL 60 (541)
T ss_pred chhheEeecCCCCeEEEEEccC-ceeeeeeccchhccCcceeEEE--------------------EEEeccchHHHH-hH
Confidence 4456889999999999999987 333332221 1223333333 321110 00000 00
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceE
Q 002519 761 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 837 (913)
Q Consensus 761 ~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i 837 (913)
......+.+...++.|...|.|.+|++..++....+. .|.+.|+++.++.+-..|.+++.| .+..|+.... ..+
T Consensus 61 ~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---~~~ 137 (541)
T KOG4547|consen 61 EKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---VII 137 (541)
T ss_pred HHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---eee
Confidence 0001112233456777778999999999998888776 589999999999998999999999 9999999765 777
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCC-----CCEEEE-EeCCCcEE
Q 002519 838 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE-----TGYVAS-ASHDKFVK 910 (913)
Q Consensus 838 ~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd-----g~~Las-gs~DG~I~ 910 (913)
+.+.+....+.+++++||+..+++++ +.|++||+++++++ .+.+|.++|+++.|..+ |++|.+ +..+..|.
T Consensus 138 ~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~ 215 (541)
T KOG4547|consen 138 RIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGIT 215 (541)
T ss_pred eeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccccccee
Confidence 88888888899999999999888876 58999999999988 89999999999999877 566554 44556677
Q ss_pred Ee
Q 002519 911 LW 912 (913)
Q Consensus 911 IW 912 (913)
+|
T Consensus 216 ~w 217 (541)
T KOG4547|consen 216 VW 217 (541)
T ss_pred EE
Confidence 77
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.3e-10 Score=113.86 Aligned_cols=237 Identities=17% Similarity=0.318 Sum_probs=161.3
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----eeeEeccCC------------CCeEEEEECCCCC--EEEE
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHS------------SLITDVRFSPSMP--RLAT 692 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-----~~~~l~~h~------------~~V~~l~fspdg~--~Las 692 (913)
..+.|+++.|...|.||++|...|.|.+|.-+... ....+.+|. ..|..|.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999765322 223344443 3588889876643 5777
Q ss_pred EeCCCeEEEEEcCCCCc------------------e-----------------------eEEe-ccCCCCeEEEEEcCCC
Q 002519 693 SSFDKTVRVWDADNPGY------------------S-----------------------LRTF-MGHSASVMSLDFHPNK 730 (913)
Q Consensus 693 gs~Dg~V~Iwdl~~~~~------------------~-----------------------~~~~-~~h~~~V~sl~fsp~~ 730 (913)
.+.|++|++|.+..... . .+.+ ..|...|.+|.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 77899999999865210 0 1111 3577778899999887
Q ss_pred CeEEEEEeCCCcEEEEEcCCCeee---EEee--------CCceEEEEecCC-CEEEEEEcCCeEEEEECCCCeE------
Q 002519 731 DDLICSCDGDGEIRYWSINNGSCT---RVFK--------GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQAC------ 792 (913)
Q Consensus 731 ~~ll~sgs~Dg~I~iwdl~~~~~~---~~~~--------~~~~~v~~s~~~-~~ll~~~~dg~I~i~D~~t~~~------ 792 (913)
..+| + .+|-.|.+|+++-..-. ..++ .-+++..|+|.. ..+...++.|.|++.|++....
T Consensus 185 et~l-S-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLL-S-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heee-e-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 7665 4 45888999998753211 1111 124556788875 4556677789999999984311
Q ss_pred EEE----------ecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCC------------Cc---e
Q 002519 793 RLS----------LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG------------NK---F 847 (913)
Q Consensus 793 ~~~----------l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~------------~~---i 847 (913)
+.. +.+-...|..+.|+++|++|++-+.-+|+|||++... .++.++..|. .. -
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeee
Confidence 111 1122346788999999999998888899999998653 4455443321 11 2
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEE
Q 002519 848 HSCVFHPTYPSLLVIGCYQSLELWN 872 (913)
Q Consensus 848 ~~l~~sp~g~~l~s~s~dg~I~iwd 872 (913)
..|.|+-+.+.+++|+..+..-||-
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEEecCCcccccccccccceeeec
Confidence 3567888888888888777666665
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-08 Score=111.14 Aligned_cols=269 Identities=14% Similarity=0.191 Sum_probs=184.0
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC-----------CCeEEEEEc
Q 002519 636 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-----------DKTVRVWDA 704 (913)
Q Consensus 636 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----------Dg~V~Iwdl 704 (913)
-+-+.|||-|+||+|-..-| |.+|--.+...+..|. |. .|.-+.|||+.+||+|-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46689999999999987655 8899877777666664 43 4899999999999998763 257999999
Q ss_pred CCCCceeEEeccC--CCCe-EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE--e-eCCceEEEEecCCCEEEEEEc
Q 002519 705 DNPGYSLRTFMGH--SASV-MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--F-KGGTAQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 705 ~~~~~~~~~~~~h--~~~V-~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~-~~~~~~v~~s~~~~~ll~~~~ 778 (913)
.+ +...+.|... ...+ .-+.|+.|++++. +-....|.||+..+...+.. + ..++....|+|.+..|+.-..
T Consensus 290 ~t-G~lkrsF~~~~~~~~~WP~frWS~DdKy~A--rm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 290 AT-GLLKRSFPVIKSPYLKWPIFRWSHDDKYFA--RMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred cc-cchhcceeccCCCccccceEEeccCCceeE--EeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence 98 6666666542 2222 2368998877544 33347899999876443322 2 235667889999776665443
Q ss_pred C-----CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-----------eEEEEECCCCCCCceEEEeec
Q 002519 779 E-----NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-----------SVRVWTVGSGSEGECVHELSC 842 (913)
Q Consensus 779 d-----g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-----------~I~vwdl~~~~~~~~i~~~~~ 842 (913)
. .++.+..+.++..+++..-|.-.-..+.|-.+|.+|+.--+. .+.|+.++...-....-.+
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel-- 444 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL-- 444 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec--
Confidence 2 367788888877777665555444567788889888754321 4667777654332222222
Q ss_pred CCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCC-CcEEEE--cccCCCeEEEEEeCCCCEEEEEe---CCCcEEEeC
Q 002519 843 NGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSE-NKTMTL--TAHEGLIAALAVSTETGYVASAS---HDKFVKLWK 913 (913)
Q Consensus 843 ~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~-~~~~~~--~~h~~~V~~l~~spdg~~Lasgs---~DG~I~IWd 913 (913)
...|...+|-|.|+.+++.+.. .+|.+|.+.+ .....+ .-.....+.+.|+|.|++++.+. ..|.+.++|
T Consensus 445 -ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 445 -KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred -chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 5578899999999998888765 4899998873 222211 11235678899999999988765 456777765
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.7e-08 Score=120.54 Aligned_cols=280 Identities=16% Similarity=0.222 Sum_probs=184.5
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEE----ECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLW----HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 706 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vw----d~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 706 (913)
...+.|.++.|-++...|+.+..+|.|.++ +..+. .+.....-...|.+++||||+..|+..+.+++|.+.+.+=
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 346789999999999999999999999999 44432 2333334567899999999999999999999888764320
Q ss_pred ------------CC----------ceeEEecc------------------------CCCCeEEEEEcCCCCeEEEEEe--
Q 002519 707 ------------PG----------YSLRTFMG------------------------HSASVMSLDFHPNKDDLICSCD-- 738 (913)
Q Consensus 707 ------------~~----------~~~~~~~~------------------------h~~~V~sl~fsp~~~~ll~sgs-- 738 (913)
.+ +.-..|.| ..+.-..|+|-.||.++.++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 00 00000100 2334567999999987665543
Q ss_pred CC---CcEEEEEcCCCeeeEEee---CCceEEEEecCCCEEEEEEc---CCeEEEEECCCC---eEEEEecCCCCCeEEE
Q 002519 739 GD---GEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA---ENVVSILDAETQ---ACRLSLQGHTKPIDSV 806 (913)
Q Consensus 739 ~D---g~I~iwdl~~~~~~~~~~---~~~~~v~~s~~~~~ll~~~~---dg~I~i~D~~t~---~~~~~l~~h~~~V~sl 806 (913)
.+ ..||||+-+ |....+.+ +-...++|.|.|+.+++.-. ...|.+|..+.. +....+......|..+
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence 22 579999976 55444332 23456899999988877765 235666654332 2222222345679999
Q ss_pred EEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecC-CCceEEEEEeCCCC-EEEEEEcCCeEEEEEC----CCC----
Q 002519 807 CWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYP-SLLVIGCYQSLELWNM----SEN---- 876 (913)
Q Consensus 807 ~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~-~~~i~~l~~sp~g~-~l~s~s~dg~I~iwd~----~~~---- 876 (913)
.|+.|+.+|+....|.|.+|...+. ......++... ...+..+.|+|... .|.+.+.++.+..+++ ..+
T Consensus 311 ~Wn~ds~iLAv~~~~~vqLWt~~NY-HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDRVQLWTRSNY-HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCCceEEEeeCC-EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 9999999999998889999998654 22233333322 23345588998654 3555555565544332 211
Q ss_pred ------------cEEE----------------EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 877 ------------KTMT----------------LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 877 ------------~~~~----------------~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
..+. .......|.+++|++++..+++-..||.|.+|+
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 1111 111457899999999998899999999999884
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.7e-08 Score=122.72 Aligned_cols=232 Identities=11% Similarity=0.106 Sum_probs=154.6
Q ss_pred EEEEECCC-CCEEEEEeCCCeEEEEEcCCCCceeEEecc--C------------CCCeEEEEEcCCCCeEEEEEeCCCcE
Q 002519 679 TDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMG--H------------SASVMSLDFHPNKDDLICSCDGDGEI 743 (913)
Q Consensus 679 ~~l~fspd-g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~--h------------~~~V~sl~fsp~~~~ll~sgs~Dg~I 743 (913)
..++++++ +.++++-+.++.|++||... ..+..+.+ . -.....|++.++++.++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788775 55666667788999999864 33333322 1 12357799998877666555566889
Q ss_pred EEEEcCCCeeeEEee-------------------CCceEEEEecCCCEEEE-EEcCCeEEEEECCCCeEEEEecCC----
Q 002519 744 RYWSINNGSCTRVFK-------------------GGTAQMRFQPHLGRYLA-AAAENVVSILDAETQACRLSLQGH---- 799 (913)
Q Consensus 744 ~iwdl~~~~~~~~~~-------------------~~~~~v~~s~~~~~ll~-~~~dg~I~i~D~~t~~~~~~l~~h---- 799 (913)
+++|+.++....... .....++++++++.+++ ...++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 999988765432211 12346889996655554 4557899999998875432 2111
Q ss_pred -----------CCCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCCceE----------EEeecC--------CCceE
Q 002519 800 -----------TKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECV----------HELSCN--------GNKFH 848 (913)
Q Consensus 800 -----------~~~V~sl~~spdg~~l~s~s-~d-~I~vwdl~~~~~~~~i----------~~~~~~--------~~~i~ 848 (913)
-.....|+|+|+++.|+++. .+ .|++||+.++...... ..+... .....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12345799999998555544 44 9999999765321000 000000 11235
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccC--------------CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 849 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHE--------------GLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~--------------~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.++++++|..+++-..++.|++||..++.+..+.+.. .....|+++++|+++++-+.+++|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 7889999998888888899999999988776554321 2577899999999888888999999996
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.8e-08 Score=121.05 Aligned_cols=239 Identities=13% Similarity=0.149 Sum_probs=159.9
Q ss_pred EEEEEecC-CCEEEEEeCCCcEEEEECCCCceeeEecc-C-------------CCCeEEEEECCCCCEEEEEeC-CCeEE
Q 002519 637 ICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEE-H-------------SSLITDVRFSPSMPRLATSSF-DKTVR 700 (913)
Q Consensus 637 ~~l~fspd-g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-h-------------~~~V~~l~fspdg~~Lasgs~-Dg~V~ 700 (913)
..++++++ +.++++-..++.|++||... ..+..+.+ . -.....|++++++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788874 56777777788999999864 44444332 1 123578999998887766654 57899
Q ss_pred EEEcCCCCceeEEeccC-----------------CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-----
Q 002519 701 VWDADNPGYSLRTFMGH-----------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----- 758 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h-----------------~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----- 758 (913)
++|+.+ + .+.++.+. -..-.+|+|+|+++.++++...++.|++||..++.......
T Consensus 650 ~id~~~-~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVN-E-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCC-C-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 999876 2 23333210 11235799999777788788889999999998775432110
Q ss_pred ------------CCceEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecC-------------C--------CCCeE
Q 002519 759 ------------GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-------------H--------TKPID 804 (913)
Q Consensus 759 ------------~~~~~v~~s~~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~-------------h--------~~~V~ 804 (913)
.....++++++++.++++.. ++.|++||+.++.......+ . -..-.
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12345889999886665554 68999999987653221100 0 01235
Q ss_pred EEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEE----------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002519 805 SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE----------LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 805 sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~----------~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~ 873 (913)
+++|+++|.++++...+ .|++||..++........ ....-.....++++++|+.+++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 88999999987777777 999999976521111100 0111224678899999998888788899999999
Q ss_pred CCCcE
Q 002519 874 SENKT 878 (913)
Q Consensus 874 ~~~~~ 878 (913)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 88764
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.6e-08 Score=109.67 Aligned_cols=190 Identities=11% Similarity=0.088 Sum_probs=129.7
Q ss_pred CEEEEEEecCCCE-EEEEeCC---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEe-CC--CeEEEEEcCCC
Q 002519 635 KVICCHFSSDGKL-LATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FD--KTVRVWDADNP 707 (913)
Q Consensus 635 ~V~~l~fspdg~~-Lasgs~D---g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~D--g~V~Iwdl~~~ 707 (913)
.+....|+|||+. ++..+.+ ..|+++|+.+++...... ..+.+....|+|||+.|+... .+ ..|.++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~- 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT- 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC-
Confidence 7788999999984 6654443 469999998876555443 556677889999998776543 33 4677778875
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCC--cEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcC------
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE------ 779 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~d------ 779 (913)
+. .+.+..+........|+|||+.++++....+ .|+++|+.+++..+....+.....|+|+++.++.....
T Consensus 267 g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 267 KT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred Cc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccC
Confidence 33 3444444443445789999998887776554 58888888877655443332346899999998887764
Q ss_pred ---CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECC
Q 002519 780 ---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVG 829 (913)
Q Consensus 780 ---g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~ 829 (913)
..|.++|+.++.... +... .......|+|||+.|+..... .+.++++.
T Consensus 346 ~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 268888998886433 3322 233468899999977665533 35666664
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=132.51 Aligned_cols=208 Identities=17% Similarity=0.284 Sum_probs=164.6
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC----Cce
Q 002519 687 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTA 762 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~ 762 (913)
+..+..+..++.+.-|..+..+ ..++.+-..|.++.-+|....+| +|+.||.|++|....+..+..++. .+.
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred cccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence 3445555556666667665422 23334567788888899877666 999999999999998887777653 345
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC---C-eEEEEECCCCCCCceEE
Q 002519 763 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVH 838 (913)
Q Consensus 763 ~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~---d-~I~vwdl~~~~~~~~i~ 838 (913)
.+.|+..|+.+-++..||.+.+|.+. .++....+.|......+.|.. ..+++.+. + .+.+||........+++
T Consensus 2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 67899999999999999999999987 677778888999999999985 55665542 3 89999987766666776
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 839 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 839 ~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.+|...++++++.|.-..|++|+.+|.|+|||++-.+.+ .+.. ++ ...++++|+..|.|+||+
T Consensus 2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 889999999999999999999999999999999887765 2222 33 556899999999999996
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-07 Score=105.82 Aligned_cols=224 Identities=12% Similarity=0.105 Sum_probs=144.2
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCE-EEEEeCC---CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCC
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 730 (913)
Q Consensus 655 g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~ 730 (913)
..|.+-|.+... .+.+.... .+....|+||++. ++..+.+ ..|+++|+.+ +.. +.+....+.+....|+|||
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~~-~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GKK-EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC-CcE-EEEecCCCcEEeeEECCCC
Confidence 345555554333 33333333 7889999999985 6655443 4688899976 333 2333345556678899999
Q ss_pred CeEEEEEeCC--CcEEEEEcCCCeeeEEeeCC--ceEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCe
Q 002519 731 DDLICSCDGD--GEIRYWSINNGSCTRVFKGG--TAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPI 803 (913)
Q Consensus 731 ~~ll~sgs~D--g~I~iwdl~~~~~~~~~~~~--~~~v~~s~~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V 803 (913)
+.++++.+.+ ..|+++|+.+++........ .....|+|++..++..+.. + .|+++|+.+++....... ...
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 9888776655 46888888887654433322 3456899999988887753 2 788889988876443321 111
Q ss_pred EEEEEcCCCCEEEEEeC--------C--eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEE
Q 002519 804 DSVCWDPSGELLASVSE--------D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLEL 870 (913)
Q Consensus 804 ~sl~~spdg~~l~s~s~--------d--~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~I~i 870 (913)
...|+|||++|+..+. + .|.+.|+.++.. ..+... .......|+|||+.|+....++ .|.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 2489999997776653 2 577778766532 222222 2233578999999988877653 5778
Q ss_pred EECCCCcEEEEcccCCCeEE
Q 002519 871 WNMSENKTMTLTAHEGLIAA 890 (913)
Q Consensus 871 wd~~~~~~~~~~~h~~~V~~ 890 (913)
+++.......+....+.|..
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~ 416 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQS 416 (419)
T ss_pred EecCCCeeEEeecCCCccCC
Confidence 88877766666554444443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.2e-07 Score=110.87 Aligned_cols=257 Identities=14% Similarity=0.198 Sum_probs=166.9
Q ss_pred EeecCCCCEEEEEEecCCCEEEEEeC---C---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC---CCe
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGH---D---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKT 698 (913)
Q Consensus 628 ~l~~H~~~V~~l~fspdg~~Lasgs~---D---g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~ 698 (913)
.+. +.+.-..|+|-.||.++|+.+. + ..|+||+-+ |....+-+.-.+--.+++|.|.|++||+... ...
T Consensus 205 ~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 205 KLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHD 282 (928)
T ss_pred ccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence 344 6677889999999999999875 2 579999976 6666555555555668999999999999865 345
Q ss_pred EEEEEcCCCCceeEEe----ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE----eeC--CceEEEEec
Q 002519 699 VRVWDADNPGYSLRTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKG--GTAQMRFQP 768 (913)
Q Consensus 699 V~Iwdl~~~~~~~~~~----~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~----~~~--~~~~v~~s~ 768 (913)
|.+|.-+ |.....| ......|..|.|++++.-|. ..-.|. |.+|-..+...-.+ +.. ....+.|++
T Consensus 283 VvFfErN--GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLA-v~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 283 VVFFERN--GLRHGEFTLRFDPEEEKVIELAWNSDSEILA-VWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP 358 (928)
T ss_pred EEEEecC--CcEeeeEecCCCCCCceeeEEEECCCCCEEE-EEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence 6777654 2222222 23456899999999977444 444444 99999887653221 221 234488888
Q ss_pred CCCE-EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEc----CCCC-EEEEEeCCeEEEEECCCCCCC--ceEEEe
Q 002519 769 HLGR-YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD----PSGE-LLASVSEDSVRVWTVGSGSEG--ECVHEL 840 (913)
Q Consensus 769 ~~~~-ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~s----pdg~-~l~s~s~d~I~vwdl~~~~~~--~~i~~~ 840 (913)
.... +.+.+.++.+.+++.. ..++.+ |+.. .+++...+.+++-.++....+ -+...+
T Consensus 359 e~p~~L~v~t~~g~~~~~~~~---------------~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l 423 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQYEIYDFA---------------WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL 423 (928)
T ss_pred CCCCEEEEEecCCcEEEEEEE---------------EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE
Confidence 7654 5555555766665532 111222 2222 444444447888877765333 333444
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---------EEc----------ccCCCeEEEEEeCCCCEEE
Q 002519 841 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---------TLT----------AHEGLIAALAVSTETGYVA 901 (913)
Q Consensus 841 ~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~---------~~~----------~h~~~V~~l~~spdg~~La 901 (913)
.. ...|..++|++++..+++...||.|.+|........ .+. .....+..++|..+..+++
T Consensus 424 ~~-~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (928)
T PF04762_consen 424 EL-PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLV 502 (928)
T ss_pred cC-CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEE
Confidence 44 568999999999998999999999999985432211 111 1234578888888877666
Q ss_pred EEeCC
Q 002519 902 SASHD 906 (913)
Q Consensus 902 sgs~D 906 (913)
....+
T Consensus 503 ~~~~~ 507 (928)
T PF04762_consen 503 LSDSD 507 (928)
T ss_pred EEecC
Confidence 66554
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.5e-08 Score=110.53 Aligned_cols=214 Identities=14% Similarity=0.156 Sum_probs=157.3
Q ss_pred cccccCccceeeeEeecCCCCEEEEEEecCC------------CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEE
Q 002519 615 MDVSQGFSFKEANSVRASTSKVICCHFSSDG------------KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 682 (913)
Q Consensus 615 ~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg------------~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~ 682 (913)
..+.+..+++.+..++-|...|+.|.|.|-. -+||++...|.|.|||+..+..+..+..|.++|.+++
T Consensus 37 V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~ 116 (1062)
T KOG1912|consen 37 VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLC 116 (1062)
T ss_pred EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhhee
Confidence 3444556788999999999999999998622 2678888899999999999999999999999999999
Q ss_pred ECC---CC-CEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-------
Q 002519 683 FSP---SM-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG------- 751 (913)
Q Consensus 683 fsp---dg-~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~------- 751 (913)
|-+ +. ..|+.-....+|.+|+.++ +..+..+........|+.+.|-+.+-++.-+..|.|.+-+.-..
T Consensus 117 W~~~rd~Srd~LlaIh~ss~lvLwntdt-G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pg 195 (1062)
T KOG1912|consen 117 WVPARDDSRDVLLAIHGSSTLVLWNTDT-GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPG 195 (1062)
T ss_pred eeeccCcchheeEEecCCcEEEEEEccC-CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCc
Confidence 965 33 3566667788999999998 55555555555667779999976666656666777777664321
Q ss_pred eeeEEeeC--------------------C--------ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCe
Q 002519 752 SCTRVFKG--------------------G--------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI 803 (913)
Q Consensus 752 ~~~~~~~~--------------------~--------~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V 803 (913)
+....-.. . ...++|+|.-+.++.......+.|+|++-..++..+.-..+.+
T Consensus 196 k~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~a 275 (1062)
T KOG1912|consen 196 KEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGA 275 (1062)
T ss_pred eeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCc
Confidence 11111000 0 0124678888888888889999999999888888877667767
Q ss_pred EEEEEcCCCC--EEEEEeCC-eEEEEECC
Q 002519 804 DSVCWDPSGE--LLASVSED-SVRVWTVG 829 (913)
Q Consensus 804 ~sl~~spdg~--~l~s~s~d-~I~vwdl~ 829 (913)
.-+.|-|+++ .|++...+ .+.||-.+
T Consensus 276 kfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 276 KFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred ceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 7777777765 67777766 77777543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=130.84 Aligned_cols=223 Identities=14% Similarity=0.228 Sum_probs=166.1
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
++.+-..|.++.-+|...+.+||+.||.|++|....+..+..++. ....|+.+.|+..|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-- 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--
Confidence 455667889999899889999999999999999998888777663 33789999999999999999999999999997
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEe---CCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEE
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI 784 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs---~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i 784 (913)
.+++.....|+....++.|.. .++++++ .++.+.+||..-...
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~------------------------------- 2327 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPM------------------------------- 2327 (2439)
T ss_pred CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcc-------------------------------
Confidence 567788888999999999875 3555543 356777777432110
Q ss_pred EECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 002519 785 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 863 (913)
Q Consensus 785 ~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s 863 (913)
..++. ..|...++++++.|.-.+|++|+.+ .|++||++.. ..++.+.. ++ ...+|++++
T Consensus 2328 -----~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr---ql~h~~~~---------~~-~~~~f~~~s 2387 (2439)
T KOG1064|consen 2328 -----NSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR---QLRHTFQA---------LD-TREYFVTGS 2387 (2439)
T ss_pred -----cceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH---HHHHHhhh---------hh-hhheeeccC
Confidence 01222 5689999999999999999999999 9999999754 34444332 44 566899999
Q ss_pred cCCeEEEEECCCCcEEEEc----ccCCC--e--EEEEEeCCCCEEEEEeCCCc
Q 002519 864 CYQSLELWNMSENKTMTLT----AHEGL--I--AALAVSTETGYVASASHDKF 908 (913)
Q Consensus 864 ~dg~I~iwd~~~~~~~~~~----~h~~~--V--~~l~~spdg~~Lasgs~DG~ 908 (913)
..|.|+||++.....+... +|.+- + .-+-+. .+.+|.+|+.||+
T Consensus 2388 s~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2388 SEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred cccceEEEEccccchhhcCchhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence 9999999999887655221 22221 0 112222 3346888888874
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-07 Score=101.24 Aligned_cols=145 Identities=18% Similarity=0.177 Sum_probs=114.8
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCC-cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 709 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg-~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 709 (913)
+|.+.|.-..+..+++-++.|..|| .|-|||.++++. +.+...-+.|.++..+++|++++.+.....|.++|+++ +.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-gn 434 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GN 434 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CC
Confidence 6788899999999999999999999 899999988764 45556678899999999999999999999999999998 44
Q ss_pred eeEEeccCCCCeEEEEEcCCCCeEEEEEeCC----CcEEEEEcCCCeeeEEee--CCceEEEEecCCCEEEEEEc
Q 002519 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGD----GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 710 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D----g~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~ 778 (913)
....-+...+-|+.+.|+|+++.+. -+--+ ..|+++|+.+++...... ....+-+|.|+++++..-+.
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~iA-YafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRWIA-YAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eeEecccccceeEEEEEcCCceeEE-EecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 4444455667899999999977554 43333 469999999988765543 33455678899887765543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.9e-10 Score=127.85 Aligned_cols=262 Identities=16% Similarity=0.200 Sum_probs=180.6
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCC--eE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TV 699 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--~V 699 (913)
.|+..++|+.|+...+|++|+-+.+.|++|+..|.|++|++.+|........|...|+.|.-+.||..+++.+.-. ..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 5788889999999999999999999999999999999999999999999999999999999999999887776533 47
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-eC------CceEEEEecCCCE
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KG------GTAQMRFQPHLGR 772 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~------~~~~v~~s~~~~~ 772 (913)
.+|++.+......+|.+ ..++.|+.....-+ .|.......+||+.++..+.++ .+ ..+...|+|.+..
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 89999875555555543 45678876533223 4444567899999998766553 22 2355778888776
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEE
Q 002519 773 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF 852 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~ 852 (913)
++- || .+||++....++.|......+ .-.|+|.|.-++..+ .|||+++.. .++.+.. -.-..+.|
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS----EIwD~RTF~---lLh~VP~--Ldqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS----EIWDMRTFK---LLHSVPS--LDQCAVTF 1309 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec----hhhhhHHHH---HHhcCcc--ccceEEEe
Confidence 652 33 589999988887776554332 346999999877765 589998763 3332221 11245567
Q ss_pred eCCCCEEEEEEc--C---------------CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE
Q 002519 853 HPTYPSLLVIGC--Y---------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASA 903 (913)
Q Consensus 853 sp~g~~l~s~s~--d---------------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 903 (913)
+..|..++..-. | ...+-||...-..+........|.++|-++...+++..
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 777765544320 0 02233333333333333445566666766666666554
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-09 Score=121.32 Aligned_cols=218 Identities=20% Similarity=0.298 Sum_probs=157.9
Q ss_pred cccccccCccceeeeEeecCCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCC-ceeeEeccCCCCeEEEEECCCCCEE
Q 002519 613 RGMDVSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRL 690 (913)
Q Consensus 613 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~V~~l~fspdg~~L 690 (913)
.+|.+.....-.....+.+|...|+++.|.+.. ..||+++.|-.|..||+.+. ..+..+..-...-..|+|+-....+
T Consensus 94 iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~v 173 (1081)
T KOG0309|consen 94 IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNV 173 (1081)
T ss_pred hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcch
Confidence 356666665666677889999999999999854 68999999999999999854 3445555555567789998776677
Q ss_pred EEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----eCCceEEEE
Q 002519 691 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRF 766 (913)
Q Consensus 691 asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~ 766 (913)
.+.+..+.|+|||++.++.++..+++|...|+.++|.......+.+++.|++|++||.......... +..+..-++
T Consensus 174 lasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~ 253 (1081)
T KOG0309|consen 174 LASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY 253 (1081)
T ss_pred hhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccc
Confidence 7777788899999999889999999999999999998765566779999999999998765432221 122333445
Q ss_pred ecCCCEEEEEEc--CCeEEE---------EECCC-CeEEEEecCCCCCeEEEEEcC--------CCC--EEEEEeCC-eE
Q 002519 767 QPHLGRYLAAAA--ENVVSI---------LDAET-QACRLSLQGHTKPIDSVCWDP--------SGE--LLASVSED-SV 823 (913)
Q Consensus 767 s~~~~~ll~~~~--dg~I~i---------~D~~t-~~~~~~l~~h~~~V~sl~~sp--------dg~--~l~s~s~d-~I 823 (913)
.|-+.-++.--. ++.|.+ |+..+ ..++++|.||.+.|..+-|-. +.+ -|++-+.| ++
T Consensus 254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l 333 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL 333 (1081)
T ss_pred cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence 554433222211 223333 33333 368899999999887666533 222 68899999 99
Q ss_pred EEEECCC
Q 002519 824 RVWTVGS 830 (913)
Q Consensus 824 ~vwdl~~ 830 (913)
++|-+.+
T Consensus 334 rlWpI~~ 340 (1081)
T KOG0309|consen 334 RLWPIDS 340 (1081)
T ss_pred EeeeccH
Confidence 9998753
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-07 Score=94.59 Aligned_cols=246 Identities=9% Similarity=-0.005 Sum_probs=162.2
Q ss_pred CCcEEEEECCCCc--eeeEeccCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEE
Q 002519 654 DKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 726 (913)
Q Consensus 654 Dg~V~vwd~~~~~--~~~~l~~h~~~V~~l~fsp-----dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~f 726 (913)
...|-+|++.+.. .+... ..+.|.| ...+||.|+.-|...+|...+..........|...|+-+.=
T Consensus 51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 4457777776432 22222 2344443 45589999999999999998755444444445444332222
Q ss_pred cCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---CCceEEEEecCCCEEEEEEcCCeEEEEECCCC-e-EEE-EecCCC
Q 002519 727 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-A-CRL-SLQGHT 800 (913)
Q Consensus 727 sp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~-~-~~~-~l~~h~ 800 (913)
..+...-+..++.|.++++.+++.+....... .....+.+++++.+.++.+....|..|.+... + .+. .....+
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 22223334478889999998887654433322 23677889999999999999999999977654 2 222 223345
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCc--eEEEeecCCCceEEEEEeCCCC--EEEEEEcCCeEEEEECCC
Q 002519 801 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE--CVHELSCNGNKFHSCVFHPTYP--SLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 801 ~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~--~i~~~~~~~~~i~~l~~sp~g~--~l~s~s~dg~I~iwd~~~ 875 (913)
+.-.+..|+.....+|++..| ++.|||++....+. .-..-..|.+.+..|.|++.|. +|+..-.-+.+.|.|+++
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 556788999999999999999 99999998754322 1223345788999999998764 466666667999999998
Q ss_pred CcEEE--------EcccCC-CeEEEEEeCCCCEEEEEeCC
Q 002519 876 NKTMT--------LTAHEG-LIAALAVSTETGYVASASHD 906 (913)
Q Consensus 876 ~~~~~--------~~~h~~-~V~~l~~spdg~~Lasgs~D 906 (913)
++... ...|.. .|..-.|+.++.-+.+.+++
T Consensus 284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred CceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 86441 122333 37888888877766555543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.8e-08 Score=103.63 Aligned_cols=244 Identities=12% Similarity=0.203 Sum_probs=169.1
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeE-EeccCCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 002519 665 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEI 743 (913)
Q Consensus 665 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I 743 (913)
...+..++||.+.|++...-|...-+++.+.|.+||||--++.+..-. ........++++.+.++... |+.|-..|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~-L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRR-LYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceE-EEEEEecceE
Confidence 345667889999999999999999999999999999997665343322 22345678899999988654 4488889999
Q ss_pred EEEEcCCC----eeeEEee---CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEE
Q 002519 744 RYWSINNG----SCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 816 (913)
Q Consensus 744 ~iwdl~~~----~~~~~~~---~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~ 816 (913)
.-+.+... ...+.+. ..+..+.|+.....+++++.|..+..--.+.+..+..+.- ...-+++.|.-. +..
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAF 169 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEE
Confidence 88876532 2222222 2345566777767788888777766555554432211110 000111111111 233
Q ss_pred EEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE--EEEcccCCCeEEEEE
Q 002519 817 SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT--MTLTAHEGLIAALAV 893 (913)
Q Consensus 817 s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~--~~~~~h~~~V~~l~~ 893 (913)
.|... .|.+-.+.- .....+..+.+|...+.+++|.+....++++..|..|.+||+..++- ..+.+|...|..+..
T Consensus 170 vGd~~gqvt~lr~~~-~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQ-NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred ecccccceEEEEEee-cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 33332 333333221 23367888899999999999999999999999999999999976554 478899999999999
Q ss_pred eCCCCEEEEEeCCCcEEEeC
Q 002519 894 STETGYVASASHDKFVKLWK 913 (913)
Q Consensus 894 spdg~~Lasgs~DG~I~IWd 913 (913)
.+--+.+++++.||.|.+|+
T Consensus 249 ~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhheeeeeccCCCeEEEEe
Confidence 88889999999999999996
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=9e-08 Score=108.86 Aligned_cols=236 Identities=16% Similarity=0.217 Sum_probs=167.6
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC------------CCEEEEEeCCCeEEE
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS------------MPRLATSSFDKTVRV 701 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspd------------g~~Lasgs~Dg~V~I 701 (913)
..-.++.|++.| +||.|+. ..|.|.|..+.+.+..++.|...|+.|+|.|- .-+||++...|.|.|
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 336778899888 7787764 57999999999999999999999999999872 125677777899999
Q ss_pred EEcCCCCceeEEeccCCCCeEEEEEcC---CCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc---eEEEEecCC-CEEE
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHL-GRYL 774 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~V~sl~fsp---~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~s~~~-~~ll 774 (913)
||+.. ...+..+..|.++|..++|.+ +.++++++-....+|.+|+..+|.....+.... .++.+.|.+ ..+.
T Consensus 94 ~d~~~-~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 94 VDFVL-ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEehh-hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 99987 666777888999999999976 344677777778999999999999887765433 346666655 4555
Q ss_pred EEEcCCeEEEEECCC-------CeEEEEecCCCC------------C-------------eEEEEEcCCCC-EEEEEeCC
Q 002519 775 AAAAENVVSILDAET-------QACRLSLQGHTK------------P-------------IDSVCWDPSGE-LLASVSED 821 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t-------~~~~~~l~~h~~------------~-------------V~sl~~spdg~-~l~s~s~d 821 (913)
+.+..|.|.+.+.-. ++....-..|.+ . .-.++|+|.-+ +++..-..
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pr 252 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPR 252 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEecc
Confidence 666677766665421 222222222222 0 11256788665 44444444
Q ss_pred eEEEEECCCCCCCceEEEeecCCCceEEEEEeCC--CCEEEEEEcCCeEEEEECCC
Q 002519 822 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT--YPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 822 ~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~--g~~l~s~s~dg~I~iwd~~~ 875 (913)
.+.|+|+.-. .++..+....+.+.-+.+-|+ ...+++...||.+.||-.+.
T Consensus 253 ellv~dle~~---~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 253 ELLVFDLEYE---CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ceEEEcchhh---ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 8999999644 556555555555555566555 45799999999999997655
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=104.41 Aligned_cols=234 Identities=17% Similarity=0.294 Sum_probs=146.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCce----eEEeccCC------------CCeEEEEEcCCC-CeEEEE
Q 002519 674 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS----LRTFMGHS------------ASVMSLDFHPNK-DDLICS 736 (913)
Q Consensus 674 h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~----~~~~~~h~------------~~V~sl~fsp~~-~~ll~s 736 (913)
....|++|.|...|.||+||...|.|.+|.-+....+ +..|.+|. ..|..|.|..++ ..-++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3456999999999999999999999999987653322 22344443 357788887653 334446
Q ss_pred EeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEc---------CCeEEEEECCCCeEEEEecCCCCCeEEEE
Q 002519 737 CDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTKPIDSVC 807 (913)
Q Consensus 737 gs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~---------dg~I~i~D~~t~~~~~~l~~h~~~V~sl~ 807 (913)
.+.|.+|++|.+.......+-......-.-+|.++-+.+... |..|..+ .+...-..|...|.++.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-----p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-----PCRVYANAHPYHINSIS 179 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec-----cceeccccceeEeeeee
Confidence 678999999999865433222211111111122211111000 1111111 01111245788899999
Q ss_pred EcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCC-----CceEEEEEeCC-CCEEEEEEcCCeEEEEECCCCcE---
Q 002519 808 WDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG-----NKFHSCVFHPT-YPSLLVIGCYQSLELWNMSENKT--- 878 (913)
Q Consensus 808 ~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~-----~~i~~l~~sp~-g~~l~s~s~dg~I~iwd~~~~~~--- 878 (913)
|..|...++++.+=.|.+|++......-.+..++.|. ..|++..|+|. ...+...+..|.|++-|++...+
T Consensus 180 ~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 180 FNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred ecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 9999888876654499999987654333344444443 24778889995 45677788889999999983221
Q ss_pred --E----EE--------cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 879 --M----TL--------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 879 --~----~~--------~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
. .+ .+-...|..+.|+++|++|++-+. -+|+|||
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 1 11 123357889999999999987654 4799997
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.5e-06 Score=87.71 Aligned_cols=214 Identities=18% Similarity=0.212 Sum_probs=139.1
Q ss_pred EEEEec-CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEEcCCCCceeEEec
Q 002519 638 CCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS-PSMPRLATSSFDKTVRVWDADNPGYSLRTFM 715 (913)
Q Consensus 638 ~l~fsp-dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fs-pdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~ 715 (913)
+++|.+ ++.++++....+.|+.|+..+++... +.... ...+++. ++ ..|+.+..++ +.++|+.+ +.....+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~-g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDT-GKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTT-TEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCC-CcEEEEee
Confidence 678888 77777777778999999998876543 22222 6677777 56 4555555555 56669887 33222222
Q ss_pred c-----CCCCeEEEEEcCCCCeEEEEEeCC--------CcEEEEEcCCCeeeEEee--CCceEEEEecCCCEEEEEEc-C
Q 002519 716 G-----HSASVMSLDFHPNKDDLICSCDGD--------GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-E 779 (913)
Q Consensus 716 ~-----h~~~V~sl~fsp~~~~ll~sgs~D--------g~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~-d 779 (913)
. .....+++++.++|+ ++++.... |.|..++.. ++...... ...+.++|+++++.++++.. .
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 1 346788999999987 44454433 567778877 55444333 34567999999988776554 7
Q ss_pred CeEEEEECCCCe-------EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEE
Q 002519 780 NVVSILDAETQA-------CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 780 g~I~i~D~~t~~-------~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~ 851 (913)
+.|..||+.... ....+.........++++.+|+++++.... .|.++|.. + +.+..+......+++|+
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCA 231 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEE
Confidence 789999885321 122222222347889999999977776655 99999976 4 55666666556899999
Q ss_pred Ee-CCCCEEEEEE
Q 002519 852 FH-PTYPSLLVIG 863 (913)
Q Consensus 852 ~s-p~g~~l~s~s 863 (913)
|. ++.+.|++.+
T Consensus 232 fgg~~~~~L~vTt 244 (246)
T PF08450_consen 232 FGGPDGKTLYVTT 244 (246)
T ss_dssp EESTTSSEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 94 6767666654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-06 Score=92.43 Aligned_cols=214 Identities=14% Similarity=0.052 Sum_probs=137.7
Q ss_pred CCCcEEEEECCCCceeeEeccC--CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCC
Q 002519 653 HDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 730 (913)
Q Consensus 653 ~Dg~V~vwd~~~~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~ 730 (913)
.+|+|..||..+++.+.....- .....+. ..+++.+|++++.++.|+.||..+ ++.+..+.. ...+...... .+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~-~~~~~~~~~~-~~ 76 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKT-GKVLWRFDL-PGPISGAPVV-DG 76 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTT-SEEEEEEEC-SSCGGSGEEE-ET
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCC-CCEEEEeec-cccccceeee-cc
Confidence 3688999999999988887541 1222211 223567888889999999999988 555555443 2222111122 23
Q ss_pred CeEEEEEeCCCcEEEEEcCCCeeeEEe-eCC------ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC-
Q 002519 731 DDLICSCDGDGEIRYWSINNGSCTRVF-KGG------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP- 802 (913)
Q Consensus 731 ~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~~------~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~- 802 (913)
+.++ .+..++.|+.+|.++++.+..+ ... .........++.++++..++.|..+|.++|+.+.........
T Consensus 77 ~~v~-v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 77 GRVY-VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TEEE-EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred cccc-cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 4444 5667889999999999988874 321 122333444788888898999999999999998888764422
Q ss_pred ---------eEEEEEcCCCCEEEEEeCC-e-EEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002519 803 ---------IDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 871 (913)
Q Consensus 803 ---------V~sl~~spdg~~l~s~s~d-~-I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iw 871 (913)
+.+-.+..++ .++.++.+ . +.+ |+.++. .+.... ...+.. .....+..|++++.++.|.+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~---~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGE---KLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTE---EEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCC---EEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEE
Confidence 1222233345 55555555 4 555 998873 332222 122222 245677888888899999999
Q ss_pred ECCCCcEE
Q 002519 872 NMSENKTM 879 (913)
Q Consensus 872 d~~~~~~~ 879 (913)
|+.+++.+
T Consensus 228 d~~tG~~~ 235 (238)
T PF13360_consen 228 DLKTGKVV 235 (238)
T ss_dssp ETTTTEEE
T ss_pred ECCCCCEE
Confidence 99999875
|
... |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.3e-09 Score=112.11 Aligned_cols=205 Identities=19% Similarity=0.291 Sum_probs=146.0
Q ss_pred eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc------eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCC
Q 002519 668 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 741 (913)
Q Consensus 668 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~------~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg 741 (913)
+..+.+|...|..|+--.+.+-+++++.|++|++|.++..+. +-.++..|+.+|.++.|..+.+ .+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence 445778999999998888888999999999999999986442 4567889999999999998754 34344 89
Q ss_pred cEEEEEcCCCeeeEEe-----eCCceEEEEecC--CCEEEEE-EcCCeEEEEECCCCeEEEEecC-----CCCCeEEEEE
Q 002519 742 EIRYWSINNGSCTRVF-----KGGTAQMRFQPH--LGRYLAA-AAENVVSILDAETQACRLSLQG-----HTKPIDSVCW 808 (913)
Q Consensus 742 ~I~iwdl~~~~~~~~~-----~~~~~~v~~s~~--~~~ll~~-~~dg~I~i~D~~t~~~~~~l~~-----h~~~V~sl~~ 808 (913)
.|.+||.--++.+... .+....+...+. ...++++ +.+.+|+++|.+..+....++. ....+++++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 9999998777655432 122333443333 3445555 4588999999999876666543 3456899999
Q ss_pred cCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE-EECCCCcEE
Q 002519 809 DPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL-WNMSENKTM 879 (913)
Q Consensus 809 spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~i-wd~~~~~~~ 879 (913)
.+.|++++++-.. .|.+.|.+++ +.+..+...+.....++ .|....++....|.++.| |....+...
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence 9999999888766 9999999988 44444333222222222 345556777777888888 876665443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-06 Score=99.90 Aligned_cols=252 Identities=11% Similarity=0.021 Sum_probs=154.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCe---
Q 002519 645 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV--- 721 (913)
Q Consensus 645 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V--- 721 (913)
+..|+.++.+|.|+.+|.++|+.+-..........+... .+..|+.++.++.|..+|.++ ++.+..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESD-GAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccC-CCEeeeecCCCCccccc
Confidence 456777888999999999999988777654322222222 244677788899999999998 55554443211100
Q ss_pred --EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc----e------EEEEec--CCCEEEEEEcCCeEEEEEC
Q 002519 722 --MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----A------QMRFQP--HLGRYLAAAAENVVSILDA 787 (913)
Q Consensus 722 --~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----~------~v~~s~--~~~~ll~~~~dg~I~i~D~ 787 (913)
.+.... ++. ++.++.+|.|..+|..+++.+..+.... . .+..+| .++.+++++.++.+..+|.
T Consensus 197 ~~~sP~v~--~~~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 197 GESAPATA--FGG-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCCEEE--CCE-EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 011111 233 4467779999999999988766543210 0 011111 3577888888999999999
Q ss_pred CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecC-CCceEEEEEeCCCCEEEEEEcC
Q 002519 788 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCY 865 (913)
Q Consensus 788 ~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~-~~~i~~l~~sp~g~~l~s~s~d 865 (913)
.+++.+...... ....+.. .+..|+.++.+ .+..+|..+++ .+...... .....+..+ .+.+|++++.+
T Consensus 274 ~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~ 344 (394)
T PRK11138 274 RSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVL--YNGYLVVGDSE 344 (394)
T ss_pred CCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEE--ECCEEEEEeCC
Confidence 999887765421 1112222 34555556656 99999998773 22221111 111222222 25578899999
Q ss_pred CeEEEEECCCCcEEE-EcccCCCeEE-EEEeCCCCEEEEEeCCCcEEEeC
Q 002519 866 QSLELWNMSENKTMT-LTAHEGLIAA-LAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 866 g~I~iwd~~~~~~~~-~~~h~~~V~~-l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|.|+++|..+++.+. .......+.+ ..+ .+..|+.++.||.|+.++
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 999999999999873 3222233332 222 244788889999998874
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.7e-08 Score=103.98 Aligned_cols=247 Identities=16% Similarity=0.155 Sum_probs=162.9
Q ss_pred CCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCceeeEecc--CCCCeEEEEECCCC
Q 002519 611 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSM 687 (913)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~--h~~~V~~l~fspdg 687 (913)
..+-|........+-+..++.|.+.|.+++.+-||.++++++. |..++++|+++...+.-++- -.+.+.++ .++..
T Consensus 31 h~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd 109 (558)
T KOG0882|consen 31 HKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGD 109 (558)
T ss_pred hhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCC
Confidence 3344433333345667788999999999999999999999887 99999999987665543332 22222222 22221
Q ss_pred -C-EEEEE-eCCCeEEEEEcCCCCcee-EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceE
Q 002519 688 -P-RLATS-SFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 763 (913)
Q Consensus 688 -~-~Lasg-s~Dg~V~Iwdl~~~~~~~-~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~ 763 (913)
. .|+.+ -.++.|.|+|-....... ..-.-|..+|.++.+.+-++..+ +....|.|..|..+. .+.-....
T Consensus 110 ~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v-SiD~~gmVEyWs~e~-----~~qfPr~~ 183 (558)
T KOG0882|consen 110 KISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV-SIDISGMVEYWSAEG-----PFQFPRTN 183 (558)
T ss_pred eeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee-eccccceeEeecCCC-----cccCcccc
Confidence 1 33333 347899999987655333 33446999999999999887555 888889999998763 11111111
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEe--
Q 002519 764 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL-- 840 (913)
Q Consensus 764 v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~-- 840 (913)
+.| .+....-++.+........+++|+|+|..+.+-+.| .|+++++++++....+.+.
T Consensus 184 l~~-------------------~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 184 LNF-------------------ELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred ccc-------------------cccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 222 222222233333345667899999999999999999 9999999887432222111
Q ss_pred ---------------------------ecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEccc
Q 002519 841 ---------------------------SCN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH 884 (913)
Q Consensus 841 ---------------------------~~~-~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h 884 (913)
..+ ......++|...+++|+.++--| |+|+++.++++..+.+.
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGK 315 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEecc
Confidence 111 22345678999999998887654 88889988887765553
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-06 Score=89.58 Aligned_cols=246 Identities=15% Similarity=0.129 Sum_probs=162.5
Q ss_pred CEEEEEEec-CCCEEEEEeCCCc-EEEEECCCCceeeEeccCCCCeE--EEEECCCCCEEEEEeC-----CCeEEEEEcC
Q 002519 635 KVICCHFSS-DGKLLATGGHDKK-AVLWHTDTLKSKTNLEEHSSLIT--DVRFSPSMPRLATSSF-----DKTVRVWDAD 705 (913)
Q Consensus 635 ~V~~l~fsp-dg~~Lasgs~Dg~-V~vwd~~~~~~~~~l~~h~~~V~--~l~fspdg~~Lasgs~-----Dg~V~Iwdl~ 705 (913)
....++.+| ++..+|.+-.-|+ ..+||..+++....+....+.-. .-+|++||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345677888 5567777777665 67899999988877765433322 3579999999998844 5889999999
Q ss_pred CCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEE
Q 002519 706 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 785 (913)
Q Consensus 706 ~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~ 785 (913)
.....+..|..|.-.-..|.+.||++.|++. +|-|.-- .++++. ++=....+-.+.+.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA---NGGI~Th-pd~GR~------------------kLNl~tM~psL~~l 143 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVA---NGGIETH-PDSGRA------------------KLNLDTMQPSLVYL 143 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEE---cCCCccC-cccCce------------------ecChhhcCCceEEE
Confidence 6567788888887777889999999877644 2333211 111111 11122345567778
Q ss_pred ECCCCeEEEE--e--cCCCCCeEEEEEcCCCCEEEEEeCC--------eEEEEECCCCCCCceEE----EeecCCCceEE
Q 002519 786 DAETQACRLS--L--QGHTKPIDSVCWDPSGELLASVSED--------SVRVWTVGSGSEGECVH----ELSCNGNKFHS 849 (913)
Q Consensus 786 D~~t~~~~~~--l--~~h~~~V~sl~~spdg~~l~s~s~d--------~I~vwdl~~~~~~~~i~----~~~~~~~~i~~ 849 (913)
|.++++.+.. + ..|...|..+++..+|..++..-.. -|-+++... ....+. ....-...+-+
T Consensus 144 d~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gS 221 (305)
T PF07433_consen 144 DARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGS 221 (305)
T ss_pred ecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEE
Confidence 8888877766 4 3377789999999999877665422 244444322 111111 11223567899
Q ss_pred EEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 850 CVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 850 l~~sp~g~~l~s~s~d-g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
|+++.++..+++++-- +.+.+||..+++.+....- ..+..++..+++ +++|.+..
T Consensus 222 Ia~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 222 IAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred EEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCCc
Confidence 9999999988777655 5999999999998844332 235556655555 66665543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-07 Score=103.81 Aligned_cols=231 Identities=14% Similarity=0.217 Sum_probs=159.4
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeE--eccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFDKTV 699 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~--l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 699 (913)
++..-.+++||...|.-+.|+.....|-++..+|.|.||-+..+.-... -....+.|.+++|+.||..|+..-.||.|
T Consensus 60 nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 60 NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV 139 (1189)
T ss_pred ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE
Confidence 4455567999999999999999999999999999999998876543322 22355679999999999999999999999
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-------eeeEE-------eeCCceEEE
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-------SCTRV-------FKGGTAQMR 765 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-------~~~~~-------~~~~~~~v~ 765 (913)
.|=.++....--+.+++ .-...+.|++|.+.++ .+-..|.+.+||.... .|... +...+..++
T Consensus 140 IVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~L-f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~ 216 (1189)
T KOG2041|consen 140 IVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQAL-FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIE 216 (1189)
T ss_pred EEEeeccceecchhcch--heccceeecccHHHHH-hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcccccee
Confidence 88887752211122222 1233588999977555 6677899999997542 11111 111223344
Q ss_pred E--------ecCCCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----------eEEEE
Q 002519 766 F--------QPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED----------SVRVW 826 (913)
Q Consensus 766 ~--------s~~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----------~I~vw 826 (913)
| -|+...++++...|.+.|...++. .++..-. .-.|..+.|+++|.+|++++.+ .|.+|
T Consensus 217 w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy 294 (1189)
T KOG2041|consen 217 WNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY 294 (1189)
T ss_pred eccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEe
Confidence 3 356678888888999988866554 3333222 2568899999999999998865 23333
Q ss_pred ECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEE
Q 002519 827 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 861 (913)
Q Consensus 827 dl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s 861 (913)
.. -...+..++..+..|+.++|-..|-.++.
T Consensus 295 sp----~G~i~gtlkvpg~~It~lsWEg~gLriA~ 325 (1189)
T KOG2041|consen 295 SP----YGHIVGTLKVPGSCITGLSWEGTGLRIAI 325 (1189)
T ss_pred cc----chhheEEEecCCceeeeeEEcCCceEEEE
Confidence 32 23556677777888888888766644443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.3e-06 Score=86.90 Aligned_cols=213 Identities=10% Similarity=0.069 Sum_probs=136.4
Q ss_pred EEEECC-CCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEc-CCCCeEEEEEeCCCcEEEEEcCCCeeeEEe
Q 002519 680 DVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH-PNKDDLICSCDGDGEIRYWSINNGSCTRVF 757 (913)
Q Consensus 680 ~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs-p~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~ 757 (913)
++.|.+ ++.++++-...+.|..|+..+ +. ...+.... ...+.+. ++ ..++ .+.. +.+.++|+.+++....+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~-~~-~~~~~~~~--~~G~~~~~~~-g~l~-v~~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDT-GE-VEVIDLPG--PNGMAFDRPD-GRLY-VADS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTT-TE-EEEEESSS--EEEEEEECTT-SEEE-EEET-TCEEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCC-Ce-EEEEecCC--CceEEEEccC-CEEE-EEEc-CceEEEecCCCcEEEEe
Confidence 678888 555666666689999999987 32 22222222 6777887 55 5455 4444 55566699988655443
Q ss_pred eC--------CceEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002519 758 KG--------GTAQMRFQPHLGRYLAAAAE--------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 758 ~~--------~~~~v~~s~~~~~ll~~~~d--------g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d 821 (913)
.. ..+.+++.++++.+++.... +.|..++.. ++...... .-...+.|+|+|+++.|+.+...
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccc
Confidence 32 23568899998866655543 568888887 55443333 34557899999999977655544
Q ss_pred --eEEEEECCCCCC-Cc---eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 002519 822 --SVRVWTVGSGSE-GE---CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 894 (913)
Q Consensus 822 --~I~vwdl~~~~~-~~---~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 894 (913)
.|..|++..... .. .+..+.......-.+++..+|+.+++....+.|.+++.. ++.+ .+......+++++|.
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 888888864322 22 222233323347889999999988877788999999998 6655 344334689999994
Q ss_pred -CCCCEEEE
Q 002519 895 -TETGYVAS 902 (913)
Q Consensus 895 -pdg~~Las 902 (913)
++.+.|+.
T Consensus 234 g~~~~~L~v 242 (246)
T PF08450_consen 234 GPDGKTLYV 242 (246)
T ss_dssp STTSSEEEE
T ss_pred CCCCCEEEE
Confidence 56555544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.3e-07 Score=91.36 Aligned_cols=196 Identities=11% Similarity=0.060 Sum_probs=129.2
Q ss_pred CCeEEEEEcCCCCc-eeEEeccCCCCeEEEEEcCC----CCeEEEEEeCCCcEEEEEcCCCeeeEEe-eCCceEEE----
Q 002519 696 DKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVF-KGGTAQMR---- 765 (913)
Q Consensus 696 Dg~V~Iwdl~~~~~-~~~~~~~h~~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~~~~~v~---- 765 (913)
...|-+|++.+..+ .+..+.+ +.|.|. ...+|+.|+..|...+|...+....... ......+.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y~g-------~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFYTG-------MTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEeeec-------ccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 34478888876432 3333332 444441 2336778889999999999866543222 11222111
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCC
Q 002519 766 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 844 (913)
Q Consensus 766 ~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~ 844 (913)
+....-.++.++.|.++++++++.+.....+....-.+.++.+++|++++++.++. .|.+|.+....+...........
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 11222356677788888888776654333332222338899999999999999888 99999997654432222333344
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE------EEcccCCCeEEEEEeCCCC
Q 002519 845 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------TLTAHEGLIAALAVSTETG 898 (913)
Q Consensus 845 ~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~------~~~~h~~~V~~l~~spdg~ 898 (913)
..-.+..|+.....++++..||++.|||++..... ....|.+.|+.+.|++.|.
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 45567789999999999999999999999876543 3456899999999998654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-07 Score=99.30 Aligned_cols=247 Identities=15% Similarity=0.174 Sum_probs=150.1
Q ss_pred EEEEECCCCceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEE
Q 002519 657 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 735 (913)
Q Consensus 657 V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 735 (913)
|++.+..+.+....+.+|...|.+++|+|..+ +|..++.+.+|+|.|+++ ...+..+..+ ..+++++|.-+..++|+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheecc-CCceeeeeccCCcceeE
Confidence 67777777777778888999999999999887 788999999999999998 6667777766 88999999999999999
Q ss_pred EEeCCCcEEEEEcCCCeeeE-EeeC-----CceEE------EEecCCCEEEEEEcCCeEEEEEC----CCCeEEEEecCC
Q 002519 736 SCDGDGEIRYWSINNGSCTR-VFKG-----GTAQM------RFQPHLGRYLAAAAENVVSILDA----ETQACRLSLQGH 799 (913)
Q Consensus 736 sgs~Dg~I~iwdl~~~~~~~-~~~~-----~~~~v------~~s~~~~~ll~~~~dg~I~i~D~----~t~~~~~~l~~h 799 (913)
+|...|.|.|||++..+... .+.+ .+..+ ...+.++.+++...+ +..|+. ....++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-C
Confidence 99999999999998654221 1111 11111 223334444444333 223322 2222322222 2
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCC-----------------eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEE
Q 002519 800 TKPIDSVCWDPSGE-LLASVSED-----------------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 861 (913)
Q Consensus 800 ~~~V~sl~~spdg~-~l~s~s~d-----------------~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s 861 (913)
.+.+.++.+++..+ +|++.-.+ ...||..+.......... -..-..+.-.++.++|+.
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~k----l~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTK----LSTTQAIRAVEDNNYIVV 405 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccc----cccccceeccccccEEEE
Confidence 34455566665444 34443331 222222221100000000 000111222345555554
Q ss_pred EEc-CCeEEEEECCCCcEEEEcccCCCeEEEEEeCC--CCEEEEEeCCCcEEEeC
Q 002519 862 IGC-YQSLELWNMSENKTMTLTAHEGLIAALAVSTE--TGYVASASHDKFVKLWK 913 (913)
Q Consensus 862 ~s~-dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd--g~~Lasgs~DG~I~IWd 913 (913)
.+. .+.+.+||..+.+++.....+.+|.+++...- +.+|++-. |..++||+
T Consensus 406 ~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 406 VGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred ecCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 443 46999999999999866666788988876542 33566554 55788875
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.4e-06 Score=86.39 Aligned_cols=231 Identities=16% Similarity=0.126 Sum_probs=122.1
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCC--ceeeEecc---CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 002519 639 CHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEE---HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 713 (913)
Q Consensus 639 l~fspdg~~Lasgs~Dg~V~vwd~~~~--~~~~~l~~---h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~ 713 (913)
++.+.||++||.-- |..|.|=..++. ..+.+... ..-.=+.++|+||+..||.+...|+|+|||+.. ..+..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g--~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG--SELFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc--ceeEE
Confidence 56778998888764 566666654421 12222222 223356899999999999999999999999974 33333
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECC-----
Q 002519 714 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE----- 788 (913)
Q Consensus 714 ~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~----- 788 (913)
+..... +..+-..-| +| +.+-+.+. .. .....+++...+|.++-|-+.
T Consensus 80 I~p~~~------~~~d~~~Ai-ag-----l~Fl~~~~------------s~---~ws~ELlvi~Y~G~L~Sy~vs~gt~q 132 (282)
T PF15492_consen 80 IPPAMS------FPGDLSDAI-AG-----LIFLEYKK------------SA---QWSYELLVINYRGQLRSYLVSVGTNQ 132 (282)
T ss_pred cCcccc------cCCccccce-ee-----eEeecccc------------cc---ccceeEEEEeccceeeeEEEEcccCC
Confidence 332111 111100001 10 11111110 00 111235555555555544431
Q ss_pred CCeEEEE--ecC-CCCCeEEEEEcCCCCEEEEEeCC-e-EEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCE--EEE
Q 002519 789 TQACRLS--LQG-HTKPIDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS--LLV 861 (913)
Q Consensus 789 t~~~~~~--l~~-h~~~V~sl~~spdg~~l~s~s~d-~-I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~--l~s 861 (913)
.....++ +.. +...|.+++|+|..++|++|+.. . -..+.. ....+++-.+-.+..+ .++
T Consensus 133 ~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a--------------~~~GLtaWRiL~~~Pyyk~v~ 198 (282)
T PF15492_consen 133 GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKA--------------SSCGLTAWRILSDSPYYKQVT 198 (282)
T ss_pred cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccc--------------cccCceEEEEcCCCCcEEEcc
Confidence 1122233 322 46789999999999987777654 2 001100 0111111111111111 111
Q ss_pred EEcCC------eEEEEECCCCcEEE-EcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 862 IGCYQ------SLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 862 ~s~dg------~I~iwd~~~~~~~~-~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
...|+ +..+|.+-+.+... .......|..|..||||..||+...+|.|.||+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 199 SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 11121 22444444433332 234577899999999999999999999999996
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-06 Score=98.40 Aligned_cols=253 Identities=11% Similarity=0.083 Sum_probs=151.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCC----------Ce-EEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 002519 645 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS----------LI-TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 713 (913)
Q Consensus 645 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~----------~V-~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~ 713 (913)
+..|++++.++.|.-+|.++|+.+-....... .+ ..+.. ++..|+.++.+|.|+.+|.++ ++.+..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAED-GEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCC-CCCccc
Confidence 55777778888999999999888766543221 00 01111 355778888899999999988 544444
Q ss_pred eccCCCCeEE-EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEE----Ee--cCCCEEEEEEcCCeEEEEE
Q 002519 714 FMGHSASVMS-LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR----FQ--PHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 714 ~~~h~~~V~s-l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~----~s--~~~~~ll~~~~dg~I~i~D 786 (913)
..... .+.+ .... ++ .++.+..++.|..+|.++++.+..+......+. .+ ..++.++++..++.+..+|
T Consensus 146 ~~~~~-~~~ssP~v~--~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 146 TKVAG-EALSRPVVS--DG-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ccCCC-ceecCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 43222 2221 1222 23 344677799999999999998877754321110 01 1235678888899999999
Q ss_pred CCCCeEEEEecCCCC-------CeEEEEEcC--CCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC
Q 002519 787 AETQACRLSLQGHTK-------PIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 787 ~~t~~~~~~l~~h~~-------~V~sl~~sp--dg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g 856 (913)
..+++.+........ ....+..+| .+..+++++.+ .+..+|..+++ .+..... .....+. ..+
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~--~~~~~~~--~~~ 294 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ---IVWKREY--GSVNDFA--VDG 294 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC---EEEeecC--CCccCcE--EEC
Confidence 999987766532110 011111122 23445555555 99999998873 2322211 1111122 246
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEEc-ccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 857 PSLLVIGCYQSLELWNMSENKTMTLT-AHE-GLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 857 ~~l~s~s~dg~I~iwd~~~~~~~~~~-~h~-~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
..|++++.++.|..+|..+++.+... ... ....+..+ .+.+|+.++.||.|+++|
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 67888899999999999999876321 111 11222222 244677778888877654
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.9e-08 Score=102.69 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=88.6
Q ss_pred EEEEEecCCCEEEE---EeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 002519 637 ICCHFSSDGKLLAT---GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 713 (913)
Q Consensus 637 ~~l~fspdg~~Las---gs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~ 713 (913)
+++.|..+...+.. .+....+.+|....+. ...+-+|-..+++|+|+||+++|+++..|..|||-........-..
T Consensus 111 ~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf 189 (390)
T KOG3914|consen 111 TAISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF 189 (390)
T ss_pred ceeeeeeccceEEEEeecCCceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh
Confidence 33444444444443 3445556666665543 3445589999999999999999999999999999888763333344
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee
Q 002519 714 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 758 (913)
Q Consensus 714 ~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~ 758 (913)
+.||...|..++..++. +|++++.|++|++||+++++++..+.
T Consensus 190 clGH~eFVS~isl~~~~--~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 190 CLGHKEFVSTISLTDNY--LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ccccHhheeeeeeccCc--eeeecCCCCcEEEEecccCCcccccc
Confidence 55899999999998753 46699999999999999999887654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.3e-07 Score=94.32 Aligned_cols=245 Identities=12% Similarity=0.084 Sum_probs=149.4
Q ss_pred cceeeeEeecCCCCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeE
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTV 699 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V 699 (913)
+|+....+.+|...|.+++|||..+ +|..++.+.+|+|.|+++...+..+..+ ..+++++|.-|.. +|+.|-..|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 5666667888999999999999877 7888999999999999999999999888 7899999987765 66777779999
Q ss_pred EEEEcCCCCceeEEecc--CCCCeEEEEEcC------CCCeEEEEEeCCCcEEEEEcCCC----eeeEEeeC--CceEEE
Q 002519 700 RVWDADNPGYSLRTFMG--HSASVMSLDFHP------NKDDLICSCDGDGEIRYWSINNG----SCTRVFKG--GTAQMR 765 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~--h~~~V~sl~fsp------~~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~~~--~~~~v~ 765 (913)
.|||++.....+..+.+ ...+|..|+.-+ .+. +++.... .+..|++... .++..++. ....+.
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismq 337 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQ 337 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeee
Confidence 99999976555444433 233444444322 222 3433322 2455655432 22222222 223334
Q ss_pred EecCCCEEEEEEcCC--------eEEEEECCCCeEEEEec-CC-CCC------eEEEEEcCCCCEEEEEeCC--eEEEEE
Q 002519 766 FQPHLGRYLAAAAEN--------VVSILDAETQACRLSLQ-GH-TKP------IDSVCWDPSGELLASVSED--SVRVWT 827 (913)
Q Consensus 766 ~s~~~~~ll~~~~dg--------~I~i~D~~t~~~~~~l~-~h-~~~------V~sl~~spdg~~l~s~s~d--~I~vwd 827 (913)
+.+..+.+++....+ .+.-.|.+++..+...+ ++ ... -..+.-.++.++|+..+++ .+.+||
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 444446666555431 11112334443333221 12 111 0112223455677766666 899999
Q ss_pred CCCCCCCceEEEeecCCCceEEEEE-eCCCCEEEEEEcCCeEEEEECC
Q 002519 828 VGSGSEGECVHELSCNGNKFHSCVF-HPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 828 l~~~~~~~~i~~~~~~~~~i~~l~~-sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
..+. ..+..+... .+|..++. .-++.-++..-.|..++||..+
T Consensus 418 ~~s~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 418 PHSF---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cchh---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 9876 455555443 56666654 3355556666677788888754
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.6e-08 Score=99.76 Aligned_cols=167 Identities=17% Similarity=0.256 Sum_probs=126.2
Q ss_pred EEEecC--CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC----CceeE
Q 002519 639 CHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP----GYSLR 712 (913)
Q Consensus 639 l~fspd--g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~----~~~~~ 712 (913)
|+|+-+ |-. ++.+.+-.|-|-|++++.... |. .++.|.++.|.-.+++++.|+.+|.|.++|++.. +.+..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 366542 223 455567788899998875332 32 5678999999998999999999999999999874 44455
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee---eEEeeCCceEEE-----EecCCCEEEEEEcCCeEEE
Q 002519 713 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKGGTAQMR-----FQPHLGRYLAAAAENVVSI 784 (913)
Q Consensus 713 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~---~~~~~~~~~~v~-----~s~~~~~ll~~~~dg~I~i 784 (913)
.+. |...|+++.........|++.+.+|+|++||++.-++ +..++++++..+ +.+..+.+++++.|...+|
T Consensus 294 rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 294 RLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 544 8899999887763344566888999999999998777 888888876543 5667789999999999999
Q ss_pred EECCCCeEEEEecCCC----CCeEEEEEc
Q 002519 785 LDAETQACRLSLQGHT----KPIDSVCWD 809 (913)
Q Consensus 785 ~D~~t~~~~~~l~~h~----~~V~sl~~s 809 (913)
|.++.+..+.++.... ..+.+++|.
T Consensus 373 Wsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EecccCceeeccCCCCccccccccceehh
Confidence 9999999888876432 234455554
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-06 Score=101.42 Aligned_cols=175 Identities=15% Similarity=0.181 Sum_probs=130.4
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEe-cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC
Q 002519 733 LICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQ-PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 811 (913)
Q Consensus 733 ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s-~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd 811 (913)
.++-|+--..+..+|+++.+..+...-....+.+. .++..+++|...|+|.+-|.++.+.++++..|.+.|..+. -.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~ 226 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQ 226 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee--cc
Confidence 34477777889999999988887766544334333 3446677777799999999999999999999999998554 46
Q ss_pred CCEEEEEeC---------C-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEE---CCCCc
Q 002519 812 GELLASVSE---------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWN---MSENK 877 (913)
Q Consensus 812 g~~l~s~s~---------d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~I~iwd---~~~~~ 877 (913)
|++|++|+. | .|+|||+|.......+.. +.++ .-+.|+|.. ..+++++..|...+.| +.+..
T Consensus 227 GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 227 GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred CCeEEEeecccccccccccchhhhhhhhhhhccCCccc---ccCc-hhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 888998874 3 589999987644333332 1221 345677864 4688889999999998 44432
Q ss_pred --EEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 878 --TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 878 --~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
...+......|.++++++++..++.|..+|.|.+|.
T Consensus 303 ~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 303 AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 224445556699999999999999999999999993
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.2e-08 Score=113.43 Aligned_cols=201 Identities=16% Similarity=0.291 Sum_probs=147.2
Q ss_pred CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCC-c
Q 002519 664 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-E 742 (913)
Q Consensus 664 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg-~ 742 (913)
..+..++|+.|....+|++|+-+.+.|+.|+..|.|++|++.+ +.....+.+|...|+-|.-+.+|..++.+++... .
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccccccccccccccCCcceeeeeccccCch
Confidence 3456677888999999999999999999999999999999998 6777888899999999999999988876655554 5
Q ss_pred EEEEEcCC-CeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec-C---CCCCeEEEEEcCCCCEEEE
Q 002519 743 IRYWSINN-GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-G---HTKPIDSVCWDPSGELLAS 817 (913)
Q Consensus 743 I~iwdl~~-~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~-~---h~~~V~sl~~spdg~~l~s 817 (913)
..+|++.. +...+.|. ...++.|+.....-++++......+||+.++.++.++. + ....-+++.|+|+.++|+-
T Consensus 1169 saLW~~~s~~~~~Hsf~-ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFD-EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred HHHhccccccCcccccc-ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence 77999875 23334443 34567777665555666666789999999987665532 1 2223367889999887764
Q ss_pred EeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002519 818 VSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 818 ~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 879 (913)
-+ .+||++.. ..++.|..-. ....-.|||.|..+++-+ .|||+++.+.+
T Consensus 1248 dG----vLWDvR~~---~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1248 DG----VLWDVRIP---EAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred Cc----eeeeeccH---HHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 32 58999876 3333333212 122336999999888866 58999887654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.5e-06 Score=92.73 Aligned_cols=224 Identities=13% Similarity=0.136 Sum_probs=126.1
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC
Q 002519 671 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 750 (913)
Q Consensus 671 l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~ 750 (913)
+....-....+.++|+++.+++ +.||...||.... ... .. .+....++|...++ +++-...+.|.|+.--+
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~-~r~-k~----~G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA-WRN-KA----FGSGLSFVWSSRNR--YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTT-TEE-EE----EEE-SEEEE-TSSE--EEEE-TTS-EEEEETTE
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccC-Ccc-cc----cCceeEEEEecCcc--EEEEECCCeEEEEEcCc
Confidence 3344555789999999999888 4577788887432 111 11 13345688988543 45666688999974333
Q ss_pred CeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCC
Q 002519 751 GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 830 (913)
Q Consensus 751 ~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~ 830 (913)
.+..+.+......-.+.. +.++....++.|.+||..+++.+..+... .|..+.|+++|++++..+.+.+.|++.+.
T Consensus 99 ~~~~k~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 99 NEVVKSIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNL 174 (443)
T ss_dssp E-TT-----SS-EEEEE---SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred cccceEEcCCcccceEEc--CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence 333334443332222222 55555566669999999999999998743 48999999999999999999888877643
Q ss_pred C------C--CCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEE
Q 002519 831 G------S--EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 902 (913)
Q Consensus 831 ~------~--~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Las 902 (913)
. + ....+..+..-...|.+.+|..+ .|+..+.. .|+. +..|+...+..-+.++.=+.+.+..+.|..
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~ 249 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYL 249 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEE
Confidence 2 0 00123333322567888899876 55555555 7766 556666666666778888888887788888
Q ss_pred EeCCCcEEEe
Q 002519 903 ASHDKFVKLW 912 (913)
Q Consensus 903 gs~DG~I~IW 912 (913)
...|+.|..+
T Consensus 250 ~Dr~~~v~~~ 259 (443)
T PF04053_consen 250 IDRDGNVISY 259 (443)
T ss_dssp E-TT--EEEE
T ss_pred EECCCCEEEE
Confidence 8888888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.8e-07 Score=89.87 Aligned_cols=193 Identities=16% Similarity=0.151 Sum_probs=110.6
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCce------------eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 636 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKS------------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 636 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~------------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
|+.+.|+.+ ..|+++..++.+..+...++.+ .+.+..|.+.-.+-+.+--++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 445555433 3556665555555444333222 223333443333333344567899999999999999
Q ss_pred cCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEe-----CCCcEEEEEcCCCeeeEEe---eCCceEEEEecCCCEEEE
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLA 775 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs-----~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~s~~~~~ll~ 775 (913)
.+......+.+......-.+.++...++ ++.++. .-+..++|+++-.+....- ...+..++.+|.-..+++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC 196 (319)
T ss_pred chHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence 8752111111111111112233333333 332221 1234456665543322211 123566777777666555
Q ss_pred -EEcCCeEEEEECCCCe-EEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCC
Q 002519 776 -AAAENVVSILDAETQA-CRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGS 830 (913)
Q Consensus 776 -~~~dg~I~i~D~~t~~-~~~~l~~h~~~V~sl~~sp-dg~~l~s~s~d-~I~vwdl~~ 830 (913)
++.||.+.+||.+... +...++.|+.+|..+-|+| ++..|+++++| .+.-||..+
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 5558999999999874 4445678999999999999 55689999999 999999753
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.1e-06 Score=97.74 Aligned_cols=241 Identities=13% Similarity=0.159 Sum_probs=150.7
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC---C
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP---G 708 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~---~ 708 (913)
..+.|.++.|.-++.-++.+..+|.|.+.|.++.. ......-...|.+++|+||...++..+.+++|.+-+-.=. .
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE-LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc-eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 34689999999999999999999999999887654 2333345678999999999999999998888876543210 1
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE---EeeCCceEEEEecCCCEEEEEEc----C-C
Q 002519 709 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VFKGGTAQMRFQPHLGRYLAAAA----E-N 780 (913)
Q Consensus 709 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~---~~~~~~~~v~~s~~~~~ll~~~~----d-g 780 (913)
+.+..-....+....+-|-..... | -|+ .|.....+........ ....+...++|.-+|.++++... + .
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTq-f-rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQ-F-RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred cccccccccccccceeccccccee-e-ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 111100111122333444332111 1 221 2222222211111100 12345677999999888877432 3 7
Q ss_pred eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCC
Q 002519 781 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 781 ~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g 856 (913)
.|+|||.+ +..-.+-.....--.+++|-|.|.++++...+ .|.+|.-+.-........+......+..++|+.++
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence 89999988 43322222233445689999999999886433 69999876544333333344445558999999999
Q ss_pred CEEEEE---EcCCeEEEEECCCCc
Q 002519 857 PSLLVI---GCYQSLELWNMSENK 877 (913)
Q Consensus 857 ~~l~s~---s~dg~I~iwd~~~~~ 877 (913)
..|++. .....|++|-+.+-.
T Consensus 302 diLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CceeeeecccccceEEEEEecCeE
Confidence 988883 344469999887754
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.4e-07 Score=90.03 Aligned_cols=165 Identities=13% Similarity=0.147 Sum_probs=109.2
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eeeEeccCCCCeEEEEECCCCCEEEEEeC-----CC
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRLATSSF-----DK 697 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~-~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----Dg 697 (913)
...+++..|.+.-.+-+.+--++.++++..||.+.+++.+... ..+.+..-...-.+.++...++.|.++.. -+
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 3444455566666666666677899999999999999987521 12222221222223333334444444321 23
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee----EEeeCCceEEEEecCC-CE
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT----RVFKGGTAQMRFQPHL-GR 772 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~----~~~~~~~~~v~~s~~~-~~ 772 (913)
..++|+++..+..+...+ ....|.+++-+|.-.+++++|+.||.|.+||.+..... +..+..+..+.|+|.. ..
T Consensus 160 ~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ceeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 466777765332222222 23349999999999999999999999999999987432 2235567789999976 57
Q ss_pred EEEEEcCCeEEEEECCC
Q 002519 773 YLAAAAENVVSILDAET 789 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t 789 (913)
+++++.||.+..||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 89999999999999875
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-05 Score=85.14 Aligned_cols=209 Identities=14% Similarity=0.102 Sum_probs=130.0
Q ss_pred CCeEEEEEcCCCCceeEEeccC--CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCce-EEEEecCCCE
Q 002519 696 DKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA-QMRFQPHLGR 772 (913)
Q Consensus 696 Dg~V~Iwdl~~~~~~~~~~~~h--~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~-~v~~s~~~~~ 772 (913)
+|+|..||..+ ++.+....-. .....+.. .++++.++ +++.++.|+.||..+++.+..+..... .......++.
T Consensus 2 ~g~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~-~~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRT-GKELWSYDLGPGIGGPVATA-VPDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGR 78 (238)
T ss_dssp TSEEEEEETTT-TEEEEEEECSSSCSSEEETE-EEETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTE
T ss_pred CCEEEEEECCC-CCEEEEEECCCCCCCccceE-EEeCCEEE-EEcCCCEEEEEECCCCCEEEEeeccccccceeeecccc
Confidence 68899999987 5555544321 12222112 22345455 668899999999999998877764211 1112445677
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEe-cCCC---CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCc-
Q 002519 773 YLAAAAENVVSILDAETQACRLSL-QGHT---KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK- 846 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t~~~~~~l-~~h~---~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~- 846 (913)
+++++.++.|+.+|.++++.+..+ .... ..........++..++++..+ .|..+|++++ +.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-S
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCCC
Confidence 888888899999999999999884 3221 112222333347777777755 9999999888 455444442211
Q ss_pred ---------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 847 ---------FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 847 ---------i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+..-.+..++ .+++++.++.+..+|+.+++.+.... ...+..+ ...++..|+.++.|+.|.+||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1122222344 78888888854444999999763222 3333332 346777888888999999886
|
... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.3e-05 Score=86.98 Aligned_cols=256 Identities=15% Similarity=0.160 Sum_probs=151.8
Q ss_pred ecCCCEEEEEe---------CCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 002519 642 SSDGKLLATGG---------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 712 (913)
Q Consensus 642 spdg~~Lasgs---------~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 712 (913)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.|+... ++.|.++++.++ ...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~-~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG-QETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS-EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCC-CeEE
Confidence 67888777743 346789999998765444433 67789999999999999887 578999988763 2222
Q ss_pred -Eecc-------C---------CCCeEEEEEcCCCCeEEEEEeCCCcEEEEE----------------------------
Q 002519 713 -TFMG-------H---------SASVMSLDFHPNKDDLICSCDGDGEIRYWS---------------------------- 747 (913)
Q Consensus 713 -~~~~-------h---------~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwd---------------------------- 747 (913)
+..+ - -+.-..+.|+||++.|++.--++..|+.+.
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 2222 0 122356889999998887665555544443
Q ss_pred -------cCCCeeeEEe-e-------CCceEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEecC-CCCCe---
Q 002519 748 -------INNGSCTRVF-K-------GGTAQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQG-HTKPI--- 803 (913)
Q Consensus 748 -------l~~~~~~~~~-~-------~~~~~v~~s~~~~~ll~~~~d-----g~I~i~D~~t~~~~~~l~~-h~~~V--- 803 (913)
+.+++....- . .-...+.|.+++..+++.-.+ ..+.++|..++++...+.. ....|
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 3332221100 0 012346788887745554432 2567778877754433322 22332
Q ss_pred EEEEEc-CCCC-EEEEEeCC---eEEEEECCCCCCCceEEEeecCCCceEE-EEEeCCCCEEEEEEcC-----CeEEEEE
Q 002519 804 DSVCWD-PSGE-LLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGCY-----QSLELWN 872 (913)
Q Consensus 804 ~sl~~s-pdg~-~l~s~s~d---~I~vwdl~~~~~~~~i~~~~~~~~~i~~-l~~sp~g~~l~s~s~d-----g~I~iwd 872 (913)
..+.|. +++. +|.....+ .|.+++...+ ....+......|.. +.|+++++.|+..+.. ..|+..+
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 355665 6666 44444444 6777887654 23455555556644 6788888877665553 2677778
Q ss_pred CC-CCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 002519 873 MS-ENKTMTLTAHEGLIAALAVSTETGYVASAS 904 (913)
Q Consensus 873 ~~-~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 904 (913)
+. .+....+....+....+.|||++++++..+
T Consensus 314 ~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 314 LDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred eCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 88 666666665555447999999999876544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-06 Score=92.42 Aligned_cols=158 Identities=13% Similarity=0.114 Sum_probs=106.3
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCc----eeeEeccCCCCeEEEEECCCCCEEEEEe---CCCeEEEEEcCCC
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----SKTNLEEHSSLITDVRFSPSMPRLATSS---FDKTVRVWDADNP 707 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~----~~~~l~~h~~~V~~l~fspdg~~Lasgs---~Dg~V~Iwdl~~~ 707 (913)
.+..+.+++++++||++..++...++++.... ....+. -...-+++.|..+...+..+. +...+.+|....
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~- 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS- 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence 34556677888899988888887777765322 222222 222334455555555544443 344555565553
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC-C---ceEEEEecCCCEEEEEEcCCeEE
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-G---TAQMRFQPHLGRYLAAAAENVVS 783 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-~---~~~v~~s~~~~~ll~~~~dg~I~ 783 (913)
.+.+...||-..++.|+|+||+.+ |++++.|..|++-....-..+..|-- + +..+++.++ ..+++++.|++|+
T Consensus 142 -~~~~~~lGhvSml~dVavS~D~~~-IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 142 -GRCEPILGHVSMLLDVAVSPDDQF-IITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLR 218 (390)
T ss_pred -cCcchhhhhhhhhheeeecCCCCE-EEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEE
Confidence 445666789999999999999865 55999999999988776655555432 2 344555444 4578999999999
Q ss_pred EEECCCCeEEEEec
Q 002519 784 ILDAETQACRLSLQ 797 (913)
Q Consensus 784 i~D~~t~~~~~~l~ 797 (913)
+||+++++.+.++.
T Consensus 219 ~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 219 LWDITSGKLLDTCD 232 (390)
T ss_pred EEecccCCcccccc
Confidence 99999999886654
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.1e-05 Score=76.50 Aligned_cols=255 Identities=14% Similarity=0.107 Sum_probs=132.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEE
Q 002519 644 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 723 (913)
Q Consensus 644 dg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~s 723 (913)
-|++++.|++.|.+++.++++|.....+.....--......+++..|.+|+.|++.+..|.++ ..++...+...+...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEecccCCceecc
Confidence 366899999999999999999987776654333222334567889999999999999999998 5555555533333334
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE--Eee--CCc--eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 002519 724 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFK--GGT--AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 797 (913)
Q Consensus 724 l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~--~~~--~~~--~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~ 797 (913)
-+..+-...++ .+...|.|.--..+...... .+. +++ ..++. +..+..++-||.+.-+| ..++.+..+.
T Consensus 141 P~i~~g~~sly-~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 141 PVIAPGDGSLY-AAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceecCCCceEE-EEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 44555333343 44445666555555442111 111 111 01111 23344455566666666 4445444333
Q ss_pred CCCCCeEE-EEEc-CCCCEEEEEeCC---------eEEEEECCCCCCCceEEEeecCCCceEEEEEeC----CCCEEEEE
Q 002519 798 GHTKPIDS-VCWD-PSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP----TYPSLLVI 862 (913)
Q Consensus 798 ~h~~~V~s-l~~s-pdg~~l~s~s~d---------~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp----~g~~l~s~ 862 (913)
. .++|.. -+-+ |....|..+.++ .-.+|...++. ..+.... +-..+.++. ..+++..+
T Consensus 216 t-~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~---t~~vy~~---p~l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 216 T-KGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGT---TLHVYLS---PKLRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred C-CCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCc---EEEEEeC---cccceeccCCCCcchhhhhhh
Confidence 1 222211 1111 222333333333 33456655541 1111110 000122221 13457778
Q ss_pred EcCCeEEEEECCCCcEEEEcccCCCeEEE---E-----E-eC---CCCEEEEEeCCCcEEEeC
Q 002519 863 GCYQSLELWNMSENKTMTLTAHEGLIAAL---A-----V-ST---ETGYVASASHDKFVKLWK 913 (913)
Q Consensus 863 s~dg~I~iwd~~~~~~~~~~~h~~~V~~l---~-----~-sp---dg~~Lasgs~DG~I~IWd 913 (913)
+.||++.|.-.+.. +..+..|.+.+-.+ . | +| +| +|+.|+.|..|+-||
T Consensus 289 s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cld 349 (354)
T KOG4649|consen 289 SGDGKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLD 349 (354)
T ss_pred cCCCcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEe
Confidence 88998888844322 12223333322211 1 1 22 34 577788999999986
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.8e-05 Score=82.90 Aligned_cols=267 Identities=13% Similarity=0.107 Sum_probs=137.6
Q ss_pred EEEecCCCEEEEEe-CCC--cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEec
Q 002519 639 CHFSSDGKLLATGG-HDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 715 (913)
Q Consensus 639 l~fspdg~~Lasgs-~Dg--~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~ 715 (913)
=+|..||+.|+.++ .|| .+++.|+++++......+.........++++++.|+....+..|+..|+++ .+....+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T-~e~~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT-LEERVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc-CcEEEEEE
Confidence 35678997666555 454 567778888775554444333344567788888887776677899999998 44445555
Q ss_pred cCCCCeEEEEEc--CCCCeEEEEEe----------------------CCCcEEEEEcCCCeeeEEeeCCc--eEEEEecC
Q 002519 716 GHSASVMSLDFH--PNKDDLICSCD----------------------GDGEIRYWSINNGSCTRVFKGGT--AQMRFQPH 769 (913)
Q Consensus 716 ~h~~~V~sl~fs--p~~~~ll~sgs----------------------~Dg~I~iwdl~~~~~~~~~~~~~--~~v~~s~~ 769 (913)
-....+-...|. .++. +++..- -.+.|...|+.+++....+.... ..+.|+|.
T Consensus 120 ~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred CCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 555555555564 2333 332211 12456677888887766665543 67889999
Q ss_pred CCEEEEEEcCC-----eEEEEECCC-CeEEEEecCCC--CCeEEEEEcCCCCEEEEEe-----CC-eEEEEECCCCCCCc
Q 002519 770 LGRYLAAAAEN-----VVSILDAET-QACRLSLQGHT--KPIDSVCWDPSGELLASVS-----ED-SVRVWTVGSGSEGE 835 (913)
Q Consensus 770 ~~~ll~~~~dg-----~I~i~D~~t-~~~~~~l~~h~--~~V~sl~~spdg~~l~s~s-----~d-~I~vwdl~~~~~~~ 835 (913)
...+++-|.+| .-+||-+++ +.....+..+. ..+..=-|.+||..|.--+ .+ .|.-+|+.+++. .
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~ 277 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-R 277 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-E
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-e
Confidence 98888877654 225564433 23333333332 2344556899999555432 23 677788877633 2
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCC----------------eEEEEECCCCcEEEEcccCC-----------Ce
Q 002519 836 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----------------SLELWNMSENKTMTLTAHEG-----------LI 888 (913)
Q Consensus 836 ~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg----------------~I~iwd~~~~~~~~~~~h~~-----------~V 888 (913)
.+... .....+-.++||++++-=+.|. -|+++++..+....+..|.. .=
T Consensus 278 ~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~h 353 (386)
T PF14583_consen 278 RLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTH 353 (386)
T ss_dssp EEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT-
T ss_pred EEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCC
Confidence 22221 2344556678888666555542 56778888877665544432 12
Q ss_pred EEEEEeCCCCEEEE-EeCCCcEEEe
Q 002519 889 AALAVSTETGYVAS-ASHDKFVKLW 912 (913)
Q Consensus 889 ~~l~~spdg~~Las-gs~DG~I~IW 912 (913)
....|+||+++|+- +...|...||
T Consensus 354 Php~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp ---EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCCccCCCCCEEEEECCCCCCccEE
Confidence 45789999997665 4457877765
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-05 Score=81.60 Aligned_cols=189 Identities=15% Similarity=0.117 Sum_probs=111.2
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEecc-------CCCCeEEEEECCC------CCEEEEEeCCCeEE
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPS------MPRLATSSFDKTVR 700 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-------h~~~V~~l~fspd------g~~Lasgs~Dg~V~ 700 (913)
-.-+-++||||+.+||.+...|+|+|||+.. ..+..+.. -...|..+.|.+- ...|++-..+|.++
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 3457799999999999999999999999875 33333332 2356777777543 22567777888888
Q ss_pred EEEcCC----CCceeEEec---cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEE
Q 002519 701 VWDADN----PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRY 773 (913)
Q Consensus 701 Iwdl~~----~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~l 773 (913)
-|-+.. +.....+|. .+...|.++.|+|..+-|++.|+....-..+. ....+.++-++..+..++
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~--------a~~~GLtaWRiL~~~Pyy 194 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK--------ASSCGLTAWRILSDSPYY 194 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc--------ccccCceEEEEcCCCCcE
Confidence 887632 112222222 34778999999998776665555433211100 001111111111111111
Q ss_pred E--EEEcCC------eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002519 774 L--AAAAEN------VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 831 (913)
Q Consensus 774 l--~~~~dg------~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~ 831 (913)
. +...|+ +..+|.+-+.+.........+.|..+..+|||.+||+...+ .|.+|++.+-
T Consensus 195 k~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 195 KQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 1 111111 11233322222222222356789999999999999999988 9999999654
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-06 Score=94.30 Aligned_cols=232 Identities=13% Similarity=0.145 Sum_probs=160.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC--CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCC
Q 002519 674 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINN 750 (913)
Q Consensus 674 h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~--~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~-Dg~I~iwdl~~ 750 (913)
|.+.|+.+.-+ ..+++++++.||.++.|.-.. +-..+..+..|...|.+++.+-++ .++++.+. |..++++|+++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeec
Confidence 66667766544 456999999999999997643 224456677888899999988875 46778676 99999999988
Q ss_pred CeeeEEeeC--CceEEEEecCCC----EEEEEE-cCCeEEEEECCCCe--EEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002519 751 GSCTRVFKG--GTAQMRFQPHLG----RYLAAA-AENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 751 ~~~~~~~~~--~~~~v~~s~~~~----~ll~~~-~dg~I~i~D~~t~~--~~~~l~~h~~~V~sl~~spdg~~l~s~s~d 821 (913)
-..+..++. -...++|....+ .+++.. .++.|.++|-.... ....-+-|..+|.++.+.+.+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 765543332 122233332222 333332 37899999988763 333444599999999999999999888877
Q ss_pred -eEEEEECCC-CC--C---------CceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc------
Q 002519 822 -SVRVWTVGS-GS--E---------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT------ 882 (913)
Q Consensus 822 -~I~vwdl~~-~~--~---------~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~------ 882 (913)
-|..|.... .. + ...+..+.-......++.|+|++..+.+.+.|..|+++++.+++++...
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 899998863 00 0 0112222333556789999999999999999999999999998754111
Q ss_pred ---------------------------ccCC-CeEEEEEeCCCCEEEEEeCCC
Q 002519 883 ---------------------------AHEG-LIAALAVSTETGYVASASHDK 907 (913)
Q Consensus 883 ---------------------------~h~~-~V~~l~~spdg~~Lasgs~DG 907 (913)
.|.. .-..++|...+++|+.|+-=|
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g 298 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG 298 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee
Confidence 1222 235678888899888876543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-06 Score=97.69 Aligned_cols=181 Identities=18% Similarity=0.228 Sum_probs=127.6
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 712 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 712 (913)
.+.++|++++ +++|+.|+.+|.|++++.... . .+...|+.. .-+|.++++||.||+|.|..+.++.. ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 4568888886 569999999999999997643 2 333344443 56799999999999999999987433 33
Q ss_pred EeccCCCCeEEEEEcCC----CCeEEEEEeCCCcEEEEEcCC---Ce--eeEEeeCCceEEEEecCCCEEEEEEcCCeEE
Q 002519 713 TFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINN---GS--CTRVFKGGTAQMRFQPHLGRYLAAAAENVVS 783 (913)
Q Consensus 713 ~~~~h~~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwdl~~---~~--~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~ 783 (913)
.+ ....++.+|+++|+ ....+++|+.-| +.++.-+- .. ......|.+.++.|. +.+++-..|-.|+
T Consensus 108 ~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDDGVK 182 (846)
T ss_pred eE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCCCcE
Confidence 33 24578999999998 222455888888 77765331 11 123334566666665 5688888889999
Q ss_pred EEECCCCeEEEEecCCCCC------eEEEEEcCCCCEEEEEeCCeEEEEECCC
Q 002519 784 ILDAETQACRLSLQGHTKP------IDSVCWDPSGELLASVSEDSVRVWTVGS 830 (913)
Q Consensus 784 i~D~~t~~~~~~l~~h~~~------V~sl~~spdg~~l~s~s~d~I~vwdl~~ 830 (913)
+||+.++..+..+...... -..+.|.++ ..|+.|-.|+|+|..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCCeEEEEEEec
Confidence 9999998887776543333 235677754 466778888999998873
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.3e-05 Score=88.43 Aligned_cols=256 Identities=12% Similarity=0.104 Sum_probs=148.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCC------eE--EEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEecc
Q 002519 645 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL------IT--DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 716 (913)
Q Consensus 645 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~------V~--~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~ 716 (913)
+..+++++.++.|+-+|..+++.+-.+...... +. .+.+. ++..++.++.++.|+.+|.++ ++.+-.+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T-G~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET-GKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC-CCEeeeecC
Confidence 346667777899999999999888776543320 10 11111 226888888999999999998 555544432
Q ss_pred CCCC-----e-EEEEEcCCCCeEEEEEe---------CCCcEEEEEcCCCeeeEEeeCCc--------------------
Q 002519 717 HSAS-----V-MSLDFHPNKDDLICSCD---------GDGEIRYWSINNGSCTRVFKGGT-------------------- 761 (913)
Q Consensus 717 h~~~-----V-~sl~fsp~~~~ll~sgs---------~Dg~I~iwdl~~~~~~~~~~~~~-------------------- 761 (913)
.... | .+..+. +..++ .++ .+|.|..+|..+++.+..++...
T Consensus 139 ~~~~~~~~~i~ssP~v~--~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIV--KKLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEE--CCEEE-EeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 2210 1 112222 23333 443 46889999999999887765321
Q ss_pred ----eEEEEecCCCEEEEEEcCC------------------eEEEEECCCCeEEEEecCCCCCeE------EEEEc----
Q 002519 762 ----AQMRFQPHLGRYLAAAAEN------------------VVSILDAETQACRLSLQGHTKPID------SVCWD---- 809 (913)
Q Consensus 762 ----~~v~~s~~~~~ll~~~~dg------------------~I~i~D~~t~~~~~~l~~h~~~V~------sl~~s---- 809 (913)
....+.+.++.+++++.++ .|.-+|.++++.+..+..-...+. ...+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 0233444567788887654 799999999999988753111110 01111
Q ss_pred CCCC---EEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEE------------------EcCCe
Q 002519 810 PSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI------------------GCYQS 867 (913)
Q Consensus 810 pdg~---~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~------------------s~dg~ 867 (913)
-++. ++++++.+ .+..+|.++++ .+...... ...+..+| ..++++ ..+|.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~---~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGK---LISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCc---EeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 1343 56667766 89999998884 33322211 11122333 233332 23578
Q ss_pred EEEEECCCCcEEEEcccC---------CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 868 LELWNMSENKTMTLTAHE---------GLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 868 I~iwd~~~~~~~~~~~h~---------~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|.-+|+.+++.+-..... .....-...-.+.+|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 888999999877222211 1111111112456788888899888764
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.3e-05 Score=89.59 Aligned_cols=274 Identities=12% Similarity=0.102 Sum_probs=152.8
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeE-eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCce
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 710 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~ 710 (913)
|...|.--+++..+++|+.|+.-|.|++|+-..+..... ..+-.+.+..+..+++..++|.|+..|.|.|+-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 344555566777889999999999999999876654333 3334556667778888889999999999999988763221
Q ss_pred eE-----EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-----eeeEEeeCCceEEEEecCCCEEEEEEcCC
Q 002519 711 LR-----TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-----SCTRVFKGGTAQMRFQPHLGRYLAAAAEN 780 (913)
Q Consensus 711 ~~-----~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-----~~~~~~~~~~~~v~~s~~~~~ll~~~~dg 780 (913)
.. .-+.|...|++++|++++..++ +|+..|.|.+-.+... +....+......+-++.-..++++++.-.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r 190 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTR 190 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhh
Confidence 11 1124788999999999988766 9999999999888772 11111222222333333344555444433
Q ss_pred eEEEEECCCCeEEEEecCCCCC--eEEEEEcCC----CCEEEEEeCCeEEEEECCCCCCCceEEEeec-----------C
Q 002519 781 VVSILDAETQACRLSLQGHTKP--IDSVCWDPS----GELLASVSEDSVRVWTVGSGSEGECVHELSC-----------N 843 (913)
Q Consensus 781 ~I~i~D~~t~~~~~~l~~h~~~--V~sl~~spd----g~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~-----------~ 843 (913)
.+ +++.+..+....=+...+. -...||-|. ..-++.++.-..|+|..+-..+....+.++. +
T Consensus 191 ~~-Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G~V~~Thqfk~ala~~p~p~i~~ 269 (726)
T KOG3621|consen 191 CI-LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAGEVIKTHQFKDALARPPAPEIPI 269 (726)
T ss_pred hh-eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecceeEEEeeehhhhhccCCCCcccC
Confidence 33 3333332211000001111 344566654 2333344444577887643221111111110 0
Q ss_pred C----------------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 002519 844 G----------------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 907 (913)
Q Consensus 844 ~----------------~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG 907 (913)
. -....+.+- .+..+++-+.-| |+|+|..+..++........|.+++.+.+ -|+.-..||
T Consensus 270 ~s~esp~~~~~~~~~q~ls~~k~~~l-~~~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~~n--eiFvL~~d~ 345 (726)
T KOG3621|consen 270 RSLESPNQRSLPSGTQHLSLSKSSTL-HSDRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHCGN--EIFVLNLDR 345 (726)
T ss_pred CCcCCccccCCCCCccccccceeEEe-ecceEEEeecce-EEEEEeccceEEEeecCCCceeEEeecCc--eEEEEecCC
Confidence 0 001111111 122344444444 88899888887766655666666665433 344444455
Q ss_pred cEEE
Q 002519 908 FVKL 911 (913)
Q Consensus 908 ~I~I 911 (913)
.+++
T Consensus 346 ~l~~ 349 (726)
T KOG3621|consen 346 GLKV 349 (726)
T ss_pred ceeE
Confidence 4443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.4e-05 Score=89.29 Aligned_cols=226 Identities=14% Similarity=0.086 Sum_probs=135.3
Q ss_pred cCCCEEEEEeC-CCcEEEEECCCCceeeEecc-CCCCeEEEEE-------------------CCCCCEEEEEe-CCCeEE
Q 002519 643 SDGKLLATGGH-DKKAVLWHTDTLKSKTNLEE-HSSLITDVRF-------------------SPSMPRLATSS-FDKTVR 700 (913)
Q Consensus 643 pdg~~Lasgs~-Dg~V~vwd~~~~~~~~~l~~-h~~~V~~l~f-------------------spdg~~Lasgs-~Dg~V~ 700 (913)
-||++|+.-.. +..|...+++..++...++- ....+..++| .+||+.|...+ ..+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 37888888764 56677777776665554432 1122333333 34554442222 245666
Q ss_pred EEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEe---CCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEE
Q 002519 701 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs---~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~ 777 (913)
++|.++ .+....+.- ......+.++++++.+++++. ...++...+..+...+..|.-.. ...+..++++.++
T Consensus 219 vID~et-meV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-iea~vkdGK~~~V-- 293 (635)
T PRK02888 219 AVDAET-MEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-IEEAVKAGKFKTI-- 293 (635)
T ss_pred EEECcc-ceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-HHHhhhCCCEEEE--
Confidence 777765 333333321 224456788999888876652 22344444443333222222111 1133445665554
Q ss_pred cCCeEEEEECCC-----CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCC---------CceEEEee
Q 002519 778 AENVVSILDAET-----QACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE---------GECVHELS 841 (913)
Q Consensus 778 ~dg~I~i~D~~t-----~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~---------~~~i~~~~ 841 (913)
.++.|.++|.++ .+.+..+. -......|.++|||+++++++.- +|.|+|+.+... ...+.+..
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 467899999998 34555444 34567889999999988887764 999999977532 11233333
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002519 842 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 842 ~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 875 (913)
. +..-...+|.++|..+.+.--|..|..|++..
T Consensus 373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred c-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3 33344568899998888888899999999876
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.9e-06 Score=96.88 Aligned_cols=182 Identities=13% Similarity=0.137 Sum_probs=134.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEE-
Q 002519 686 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM- 764 (913)
Q Consensus 686 dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v- 764 (913)
+...++.|+.-..+..+|+++ .+..+...-....|+-++.+ ++++++|...|+|.+-|.++.+.++++..+...+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~-~~e~r~~~v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNT-EKETRTTNVSASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeeccc-ceeeeeeeccCCceEEEEec---CcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 455778888888888999987 44555544444456666654 4467799999999999999999999999887665
Q ss_pred EEecCCCEEEEEEc---------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC--EEEEEeCCeEEEEECCCCCC
Q 002519 765 RFQPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE--LLASVSEDSVRVWTVGSGSE 833 (913)
Q Consensus 765 ~~s~~~~~ll~~~~---------dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~--~l~s~s~d~I~vwdl~~~~~ 833 (913)
.|+..|+.+++++. |..|+|||+|..+.+.-+.-+.++ .-+.|+|.-. ++++.+.+.+.+.|..+...
T Consensus 222 DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 222 DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 58888999998876 557899999998776666555444 4467788543 44444455778888433222
Q ss_pred -CceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002519 834 -GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 872 (913)
Q Consensus 834 -~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd 872 (913)
...+..+......+..+++++++..++.+..+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 234445555566799999999999999999999999997
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00041 Score=80.04 Aligned_cols=239 Identities=15% Similarity=0.130 Sum_probs=135.9
Q ss_pred EEEEEEecCCCEEEEE-eCCC----cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCC-----------eE
Q 002519 636 VICCHFSSDGKLLATG-GHDK----KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-----------TV 699 (913)
Q Consensus 636 V~~l~fspdg~~Lasg-s~Dg----~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-----------~V 699 (913)
+..+++||||++||.+ +..| .|+|+|+++++.+...-... ....+.|.+|++.|+....|. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999998875 3333 59999999997765331111 122399999998877765433 37
Q ss_pred EEEEcCCCCce-eEEeccCCCC--eEEEEEcCCCCeEEEEEeCC---CcEEEEEcCCC-----eeeEEeeC--CceEEEE
Q 002519 700 RVWDADNPGYS-LRTFMGHSAS--VMSLDFHPNKDDLICSCDGD---GEIRYWSINNG-----SCTRVFKG--GTAQMRF 766 (913)
Q Consensus 700 ~Iwdl~~~~~~-~~~~~~h~~~--V~sl~fsp~~~~ll~sgs~D---g~I~iwdl~~~-----~~~~~~~~--~~~~v~~ 766 (913)
++|++.++... ...+...... ...+..+++++.+++..... ..|++.|+..+ ........ ......-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888774332 3344433332 56788999999888766544 45888888874 23333322 2222222
Q ss_pred ecCCCEEEEEEc----CCeEEEEECCCCe---EEEEecCCCCC--eEEEEEcCCCC-EEEEEeCC---eEEEEECCCCCC
Q 002519 767 QPHLGRYLAAAA----ENVVSILDAETQA---CRLSLQGHTKP--IDSVCWDPSGE-LLASVSED---SVRVWTVGSGSE 833 (913)
Q Consensus 767 s~~~~~ll~~~~----dg~I~i~D~~t~~---~~~~l~~h~~~--V~sl~~spdg~-~l~s~s~d---~I~vwdl~~~~~ 833 (913)
.. ++.++..+. .+.|...++.... ....+..+... +..+.. .+. +++....+ .|++|++..+
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~-- 359 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDG-- 359 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-T--
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCC--
Confidence 22 554544443 3577778887764 23344445553 444444 344 44444444 7999999722
Q ss_pred CceEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCcEEEE
Q 002519 834 GECVHELSC-NGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKTMTL 881 (913)
Q Consensus 834 ~~~i~~~~~-~~~~i~~l~~sp~g~~l~s~s~d----g~I~iwd~~~~~~~~~ 881 (913)
.....+.. ..+.|..+...++.+.+...-.. .+|+.||+.+++...+
T Consensus 360 -~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 360 -KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp -EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred -cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 22222222 23345555555665554443332 4899999999887644
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.9e-07 Score=103.28 Aligned_cols=241 Identities=13% Similarity=0.147 Sum_probs=150.8
Q ss_pred CCCCEEEEEEecCC--CEEEEEeCCCcEEEEECCCCc--eeeEeccCCCCeEEEEECCC-CCEEEEEe----CCCeEEEE
Q 002519 632 STSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPS-MPRLATSS----FDKTVRVW 702 (913)
Q Consensus 632 H~~~V~~l~fspdg--~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h~~~V~~l~fspd-g~~Lasgs----~Dg~V~Iw 702 (913)
.+..+.|++++-+. .++++|..+|.|.+-.+.... ......+|...+++++|++- .+.||.|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 34567888876543 588999999999998876322 24456678889999999985 44666663 25679999
Q ss_pred EcCCCC----ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeeEEeeC-CceEEEEecCCCEEEEE
Q 002519 703 DADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKG-GTAQMRFQPHLGRYLAA 776 (913)
Q Consensus 703 dl~~~~----~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~~-~~~~v~~s~~~~~ll~~ 776 (913)
|+.+.- .......+......++||..+.+ ++.+|.....|.++|++-. .....+.. -+..+.+.|....+++.
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec
Confidence 998731 11111112445566899986644 6668888899999999832 22222222 34456778866677777
Q ss_pred EcCCeEEEEE-CCCCe-EEEEecCCC----CCeEEEEEcCCCC-EEEEEeCC--eEEEEECCCCCC------CceEEE--
Q 002519 777 AAENVVSILD-AETQA-CRLSLQGHT----KPIDSVCWDPSGE-LLASVSED--SVRVWTVGSGSE------GECVHE-- 839 (913)
Q Consensus 777 ~~dg~I~i~D-~~t~~-~~~~l~~h~----~~V~sl~~spdg~-~l~s~s~d--~I~vwdl~~~~~------~~~i~~-- 839 (913)
..|+.|.+|| .++-+ ++..+...+ +.+..++|+|... .+++...| +|++||+..-.. ...+..
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s 293 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYES 293 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecc
Confidence 8899999999 33332 222222222 2489999999665 77777777 899999854211 111111
Q ss_pred ---eecCC--CceEEEEEeCCC--CEEEEEEcCCeEEEEEC
Q 002519 840 ---LSCNG--NKFHSCVFHPTY--PSLLVIGCYQSLELWNM 873 (913)
Q Consensus 840 ---~~~~~--~~i~~l~~sp~g--~~l~s~s~dg~I~iwd~ 873 (913)
+...+ ..|.+..||+.. ...+++...-.+..|++
T Consensus 294 ~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V 334 (783)
T KOG1008|consen 294 KYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV 334 (783)
T ss_pred cccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence 11122 456777777755 33444444444444444
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00013 Score=77.84 Aligned_cols=192 Identities=14% Similarity=0.166 Sum_probs=136.1
Q ss_pred CCeEEEEEcCCCCeEEEEEeCCCc-EEEEEcCCCeeeEEeeCCc-----eEEEEecCCCEEEEEEc-----CCeEEEEEC
Q 002519 719 ASVMSLDFHPNKDDLICSCDGDGE-IRYWSINNGSCTRVFKGGT-----AQMRFQPHLGRYLAAAA-----ENVVSILDA 787 (913)
Q Consensus 719 ~~V~sl~fsp~~~~ll~sgs~Dg~-I~iwdl~~~~~~~~~~~~~-----~~v~~s~~~~~ll~~~~-----dg~I~i~D~ 787 (913)
.....++.+|.....++.+-.-|+ ..+||..+++....+.... ..-+|++++.+++++-. .|.|-|||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 345568889977778877777665 6789999998887765432 23679999999998765 479999999
Q ss_pred C-CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------------------eEEEEECCCCCCCceEEE--e--ecC
Q 002519 788 E-TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-------------------SVRVWTVGSGSEGECVHE--L--SCN 843 (913)
Q Consensus 788 ~-t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-------------------~I~vwdl~~~~~~~~i~~--~--~~~ 843 (913)
. +.+.+.++..|.-.-..+.+.|||+.|+++..+ ++.+.|..++ ..+.. + ..|
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---ALLEQVELPPDLH 161 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---ceeeeeecCcccc
Confidence 9 668888888887777888999999877766422 3445555555 33333 3 336
Q ss_pred CCceEEEEEeCCCCEEEEEEcCC-------eEEEEECCCCcE-EE-----EcccCCCeEEEEEeCCCCEEEEEe-CCCcE
Q 002519 844 GNKFHSCVFHPTYPSLLVIGCYQ-------SLELWNMSENKT-MT-----LTAHEGLIAALAVSTETGYVASAS-HDKFV 909 (913)
Q Consensus 844 ~~~i~~l~~sp~g~~l~s~s~dg-------~I~iwd~~~~~~-~~-----~~~h~~~V~~l~~spdg~~Lasgs-~DG~I 909 (913)
...|..+++..+|..++..-..+ .|.+++....-. +. ...-.+.|-+|+++.++.+|++.+ .-+++
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 67899999999988666654443 455555444211 11 123457899999999998775544 67889
Q ss_pred EEeC
Q 002519 910 KLWK 913 (913)
Q Consensus 910 ~IWd 913 (913)
.+||
T Consensus 242 ~~~d 245 (305)
T PF07433_consen 242 AVWD 245 (305)
T ss_pred EEEE
Confidence 9995
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.7e-06 Score=93.67 Aligned_cols=109 Identities=16% Similarity=0.230 Sum_probs=84.3
Q ss_pred EEEEEecCCCEEEEEe----CCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 002519 637 ICCHFSSDGKLLATGG----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 712 (913)
Q Consensus 637 ~~l~fspdg~~Lasgs----~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 712 (913)
+-+.|+|...+||+++ ..|.|.||- ++|++-+.... .-.+++++|+|..-.|+.|=.-|.+.+|...+ .+...
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCC-ceeee
Confidence 3456889888888876 457888884 55654433321 12256799999988899998899999999886 44455
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002519 713 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 749 (913)
Q Consensus 713 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~ 749 (913)
....|..+|..+.|+++|..++ ++..-|.|.+|...
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~-t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLM-TLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEE-EcCCCceeEEEEee
Confidence 5667999999999999988665 99999999999876
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-06 Score=63.28 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.4
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 661 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd 661 (913)
+.+..+++|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00068 Score=73.33 Aligned_cols=255 Identities=11% Similarity=0.121 Sum_probs=155.3
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEEcCCCCceeEEec-cC--C---
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFM-GH--S--- 718 (913)
Q Consensus 655 g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~V~Iwdl~~~~~~~~~~~-~h--~--- 718 (913)
+.|+|+|.++++.+-.+.. +..-.+..+||++.+++++. .-.|.+||..+ -.....+. .. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-L~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-LSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-TEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCc-CcccceEecCCcchhee
Confidence 4799999999988877764 23344678999998887642 34689999987 33222221 11 1
Q ss_pred -CCeEEEEEcCCCCeEEEE-EeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEE
Q 002519 719 -ASVMSLDFHPNKDDLICS-CDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLS 795 (913)
Q Consensus 719 -~~V~sl~fsp~~~~ll~s-gs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~-t~~~~~~ 795 (913)
.....+.++.|++++++. .+---.|.|.|+..++.+..+..+-....+-.....|.+.|.||.+..+.+. .|+...+
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 122336778888776643 2334678899999999988887665555544444678899999998888777 3444322
Q ss_pred e----cCCCCC-eEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCCceEEEeecC----------CCceEEEEEeCCCCEE
Q 002519 796 L----QGHTKP-IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCN----------GNKFHSCVFHPTYPSL 859 (913)
Q Consensus 796 l----~~h~~~-V~sl~~spdg~-~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~----------~~~i~~l~~sp~g~~l 859 (913)
. ....++ +..-++...+. +++..-.+.|+-.|+.... ......+... .+..--+++++....|
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 1 111222 22334554444 4444444477777775432 2222222211 1123346788776666
Q ss_pred EEEEcCC----------eEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-CCCcEEEeC
Q 002519 860 LVIGCYQ----------SLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 913 (913)
Q Consensus 860 ~s~s~dg----------~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~Lasgs-~DG~I~IWd 913 (913)
++.-..+ .|.+||+.+++.+....-+..+.+|.++.+.+ +|++.+ .++.|.|||
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 6653321 68889999999986555556788999998877 665544 578999986
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00015 Score=84.58 Aligned_cols=191 Identities=13% Similarity=0.157 Sum_probs=131.9
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCC-eEEEEECCCCCEEEEEeCCC-----eEEEEEcCCC-
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSSFDK-----TVRVWDADNP- 707 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~-V~~l~fspdg~~Lasgs~Dg-----~V~Iwdl~~~- 707 (913)
.|.| |++.+..+|.|+.+|.|.+++- ..+.+..+..+... |..+....+..+|++.+.|+ .|+|||++.-
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4544 5688889999999999988873 34555777777777 55554444446888888765 4899999742
Q ss_pred ----Ccee---EEec----cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC----Ce---eeEEeeCCceEEEEecC
Q 002519 708 ----GYSL---RTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----GS---CTRVFKGGTAQMRFQPH 769 (913)
Q Consensus 708 ----~~~~---~~~~----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~----~~---~~~~~~~~~~~v~~s~~ 769 (913)
..++ +.+. ....++.+++.+.+- ..+|+|-.+|.|.++.-+- +. ....-+.+++.+.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 1222 2222 135678888888874 4666888999999885321 11 11122456788888888
Q ss_pred CCEEEEEEcCCeEEEEECCCCeE-EEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 002519 770 LGRYLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 829 (913)
Q Consensus 770 ~~~ll~~~~dg~I~i~D~~t~~~-~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~ 829 (913)
+..++.+.....|.+|.+....+ ...+..|...++|..|++...-|++++...|.+||..
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd 243 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSD 243 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCC
Confidence 87766666677888888874443 4447778888999999876665777777789999985
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00011 Score=85.72 Aligned_cols=203 Identities=14% Similarity=0.252 Sum_probs=136.4
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCC-----cEEEEEcCCC-----
Q 002519 682 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNG----- 751 (913)
Q Consensus 682 ~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg-----~I~iwdl~~~----- 751 (913)
+|++.+..+|.|+.||.|.+.+-. -..++.|..+...|...-|.-++..++++.+.|+ .|+|||++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 366788899999999988777643 3445777777777444555556656666666654 5899998753
Q ss_pred -eee---EEee-------CCceEEEEecCCCEEEEEEcCCeEEEEECCC----CeEEEEecCCCCCeEEEEEcCCCCE-E
Q 002519 752 -SCT---RVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAET----QACRLSLQGHTKPIDSVCWDPSGEL-L 815 (913)
Q Consensus 752 -~~~---~~~~-------~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t----~~~~~~l~~h~~~V~sl~~spdg~~-l 815 (913)
.|+ +.+. .....++++.+...+++|-.+|.|.++..+- +....-......+|+.+++..++.. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 233 2222 1345678888888899999999999984321 1111112224678999999999985 5
Q ss_pred EEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-EEEEc-ccCCCeE
Q 002519 816 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLT-AHEGLIA 889 (913)
Q Consensus 816 ~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~-~~~~~-~h~~~V~ 889 (913)
+++....|.+|.+... . .....+..++..+.|..+++....|++++ +..|.+|+..... +..+. +|.....
T Consensus 188 Fv~Tt~~V~~y~l~gr-~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGR-T-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred EEEecceeEEEEecCC-C-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEE
Confidence 6666668999999732 2 44556777888889888887666455444 4579999987544 33555 5554443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.28 E-value=2e-06 Score=62.98 Aligned_cols=39 Identities=41% Similarity=0.557 Sum_probs=36.9
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 665 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 665 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
++++.++.+|...|++|+|+|++.+|++++.|+.|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.9e-06 Score=88.93 Aligned_cols=159 Identities=12% Similarity=0.143 Sum_probs=118.2
Q ss_pred EEEeCCCcEEEEEcCCCeeeEE-eeCCceEEEEecCCCEEEEEEcCCeEEEEECCCC-----eEEEEecCCCCCeEEEEE
Q 002519 735 CSCDGDGEIRYWSINNGSCTRV-FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-----ACRLSLQGHTKPIDSVCW 808 (913)
Q Consensus 735 ~sgs~Dg~I~iwdl~~~~~~~~-~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~-----~~~~~l~~h~~~V~sl~~ 808 (913)
++.+.+-.|-+-|++++..... -+..+....|.-.++.++.|+..|.|..+|++.. .+...+. |...|+++..
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhh
Confidence 4666788899999988753322 2345556678888899999999999999999875 3333333 8899999988
Q ss_pred cC-CCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEE--EEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-
Q 002519 809 DP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS--CVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA- 883 (913)
Q Consensus 809 sp-dg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~--l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~- 883 (913)
.. ++.+|.+.+.+ +|++||++.-+..+.+..+.+|-+.... +.+++....|++++.|...+||.++.+.++....
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 77 67788888777 9999999877555558888887665443 3456677889999999999999999999884332
Q ss_pred ----cCCCeEEEEEe
Q 002519 884 ----HEGLIAALAVS 894 (913)
Q Consensus 884 ----h~~~V~~l~~s 894 (913)
.+..+.+++|.
T Consensus 387 ~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 387 PYSASEVDIPSVAFD 401 (425)
T ss_pred CCccccccccceehh
Confidence 23345566664
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0011 Score=75.36 Aligned_cols=90 Identities=12% Similarity=0.100 Sum_probs=70.9
Q ss_pred eEEEEECCCCCCCceEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEE
Q 002519 822 SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYV 900 (913)
Q Consensus 822 ~I~vwdl~~~~~~~~i~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~L 900 (913)
..++|++... +..++.... .....+.+|+++|+...++.|+.||.|.+||...+.... ....-.++.++|+|+|.+|
T Consensus 237 d~ciYE~~r~-klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 237 DSCIYECSRN-KLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEEeecC-ceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEE
Confidence 3567777543 233333222 346789999999999999999999999999998775443 3455678899999999999
Q ss_pred EEEeCCCcEEEeC
Q 002519 901 ASASHDKFVKLWK 913 (913)
Q Consensus 901 asgs~DG~I~IWd 913 (913)
++|+.-|.|.+||
T Consensus 315 ~V~s~qGelQ~FD 327 (545)
T PF11768_consen 315 VVGSEQGELQCFD 327 (545)
T ss_pred EEEcCCceEEEEE
Confidence 9999999999997
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-06 Score=58.27 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcC
Q 002519 10 KMLDVYIHDYLVKRDLKASAQAFQAEG 36 (913)
Q Consensus 10 ~~l~~yiydyl~~~~~~~~a~a~~~e~ 36 (913)
+.||.+|||||+++|+.++|++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999885
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00038 Score=80.88 Aligned_cols=182 Identities=8% Similarity=-0.043 Sum_probs=114.7
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--CCceEEEEecCCCEEEEEEcC----CeEEEEECCCCeEEEEecCC
Q 002519 726 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE----NVVSILDAETQACRLSLQGH 799 (913)
Q Consensus 726 fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~s~~~~~ll~~~~d----g~I~i~D~~t~~~~~~l~~h 799 (913)
+.+||+.+..+.-..+.+.+.|.++.+....+. +....+.++++++++++++.+ ..+...+..+...+..+...
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 344555444444445677778888766655543 234457889999998888632 34555554443333322211
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC--CCCceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 002519 800 TKPIDSVCWDPSGELLASVSEDSVRVWTVGSG--SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSEN 876 (913)
Q Consensus 800 ~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~--~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~I~iwd~~~~ 876 (913)
.+ -.+.++|++... ..+.|.++|.++. .....+..+. -....+.|.++|||+++++++. +.+|.|+|+...
T Consensus 280 --~i--ea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 280 --RI--EEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred --HH--HHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence 01 134557886665 3348999999861 0113333333 3667889999999999888876 679999999875
Q ss_pred cE------------EEEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 877 KT------------MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 877 ~~------------~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+. ..-..-...-...+|+.+|....|---|..|..||
T Consensus 354 k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 354 DDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred hhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 53 11112233445678899998888888899999996
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0016 Score=74.11 Aligned_cols=252 Identities=15% Similarity=0.132 Sum_probs=166.0
Q ss_pred EEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEE
Q 002519 657 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 735 (913)
Q Consensus 657 V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 735 (913)
+.+++..+......+..+. ....+.+.+++..++.... ...+.+.+... .............-.++.+++.+..+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ceeeeeccCCCccccceeeCCCCCeEEE
Confidence 5566655555444444333 5667788888865544432 23455544442 2211111111134456888999888888
Q ss_pred EEeCCCcEEEEEcCCCeeeEEeeC--CceEEEEecCCCEEEEEEc---CCeEEEEECCCCeEEEEecCCCCCeEEEEEcC
Q 002519 736 SCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDP 810 (913)
Q Consensus 736 sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~---dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp 810 (913)
+...++.|.+.|..+.++...... ....+.+.++++.++++.. ++.+.+.|..+.+.+.+...-..+ ..++++|
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 888889999999888877766543 4567899999988888776 689999999999888876544445 8899999
Q ss_pred CCCEEEEEeCC--eEEEEECCCCCCCc-eEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEc-c
Q 002519 811 SGELLASVSED--SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLT-A 883 (913)
Q Consensus 811 dg~~l~s~s~d--~I~vwdl~~~~~~~-~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~-~ 883 (913)
+|..++.+..+ .|.++|........ .......-...-..+.+.+++.++++.... +.+.+.|..++...... .
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 99977776633 99999975542111 000011123344678899999977776655 48999999998877442 2
Q ss_pred cCC-CeEEEEEeCCCCEEEEEeCC-CcEEE
Q 002519 884 HEG-LIAALAVSTETGYVASASHD-KFVKL 911 (913)
Q Consensus 884 h~~-~V~~l~~spdg~~Lasgs~D-G~I~I 911 (913)
-.. ....+.++|+|+++.+.... +.|.+
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 222 56778889999988777433 44444
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00016 Score=82.60 Aligned_cols=190 Identities=13% Similarity=0.242 Sum_probs=123.4
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCC---CcEEEEEcCCCeeeEE--eeCCceEEEEecCCCEEEEEEc-CC-
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAA-EN- 780 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D---g~I~iwdl~~~~~~~~--~~~~~~~v~~s~~~~~ll~~~~-dg- 780 (913)
+.....+......+..-+|+|++..+.+..-.. ..|+++|+++++.... +.+......|+|++.+++.+.. |+
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence 444555555566777789999988876554333 3499999998865444 4566677889999988887765 44
Q ss_pred -eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCC
Q 002519 781 -VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 855 (913)
Q Consensus 781 -~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~ 855 (913)
.|+++|+.++.... +....+.-+.-.|+|||++|+..++. .|.++++..... ..+......-..-.|+|+
T Consensus 262 ~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~Spd 336 (425)
T COG0823 262 PDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPD 336 (425)
T ss_pred ccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCC
Confidence 67788988876333 44333444467899999988777665 466666654422 223322333337789999
Q ss_pred CCEEEEEEcC-C--eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEE
Q 002519 856 YPSLLVIGCY-Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 902 (913)
Q Consensus 856 g~~l~s~s~d-g--~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Las 902 (913)
|++|+..+.. | .|.++|+.++..+....+......-+|.++++.|..
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEE
Confidence 9999988854 3 477777776664433333333444455555554443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0009 Score=70.55 Aligned_cols=198 Identities=14% Similarity=0.191 Sum_probs=115.4
Q ss_pred eeEeecCCCCEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeEeccC-CCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 626 ANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 626 ~~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~V~vwd~~~~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
.+.+.+-.+.|..|+|+|+.. ++|+....+.|..++. +|+.++.+.-. .+..-.|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 455666677799999999755 6666667788888886 47777776543 35688999988887777666689999999
Q ss_pred cCCCCce-----eEEec-----cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC---CeeeEE-----------eeC
Q 002519 704 ADNPGYS-----LRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRV-----------FKG 759 (913)
Q Consensus 704 l~~~~~~-----~~~~~-----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~---~~~~~~-----------~~~ 759 (913)
+...... +..+. .++..+..|+|.+.++.++++ -+..-..||.+.. ...+.. +..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE-eCCCChhhEEEccccCccceeeccccccccccceec
Confidence 9542221 11111 355668999999998888855 4455566666653 211111 112
Q ss_pred CceEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCC---------CCeEEEEEcCCCCEEEEEeCCeEEEE
Q 002519 760 GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSEDSVRVW 826 (913)
Q Consensus 760 ~~~~v~~s~~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h~---------~~V~sl~~spdg~~l~s~s~d~I~vw 826 (913)
....+.++|..+.+++-+. ...|.++| .+++.+..+.-.. ..-..|+|+++|++.++.-.+.+++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 4567889999888777666 56888888 6666555443221 24678999999987766654455444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.2e-05 Score=86.74 Aligned_cols=138 Identities=13% Similarity=0.175 Sum_probs=100.6
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC-----CCEEEEEeCCCeEEEEEcCCCC-ceeEEecc
Q 002519 643 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-----MPRLATSSFDKTVRVWDADNPG-YSLRTFMG 716 (913)
Q Consensus 643 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspd-----g~~Lasgs~Dg~V~Iwdl~~~~-~~~~~~~~ 716 (913)
.+|.++++|+.||+|.|..+.+.+....+. ...++.+|+++|+ .+.+++|+.-| +.++.-.=-+ +....+..
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~ 158 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE 158 (846)
T ss_pred cCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence 359999999999999999999888777665 4467999999998 56899999888 7777543211 11224556
Q ss_pred CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCc---------eEEEEecCCCEEEEEEcCCeEEEEEC
Q 002519 717 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---------AQMRFQPHLGRYLAAAAENVVSILDA 787 (913)
Q Consensus 717 h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---------~~v~~s~~~~~ll~~~~dg~I~i~D~ 787 (913)
..+.|.+|+|.. ++|+-++ |-.|++||+.++..+..++... ..+.|.++. .++.+...+|+|..+
T Consensus 159 ~eG~I~~i~W~g---~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIGW~d~v~i~~I 232 (846)
T KOG2066|consen 159 GEGPIHSIKWRG---NLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED--RLVIGWGDSVKICSI 232 (846)
T ss_pred CccceEEEEecC---cEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC--eEEEecCCeEEEEEE
Confidence 778999999983 3775665 5569999999988777664322 235566553 344566677888877
Q ss_pred C
Q 002519 788 E 788 (913)
Q Consensus 788 ~ 788 (913)
+
T Consensus 233 ~ 233 (846)
T KOG2066|consen 233 K 233 (846)
T ss_pred e
Confidence 6
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00025 Score=85.86 Aligned_cols=226 Identities=13% Similarity=0.173 Sum_probs=132.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee
Q 002519 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 754 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~ 754 (913)
...|.++.|.-+..-|+.+..+|.|.+-|..+. .+.....-...|.+++|+||...+. ..+.+.+|.+-+ .+...+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~-liT~~~tll~mT-~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLA-LITGRQTLLFMT-KDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEE-EEeCCcEEEEEe-ccccch
Confidence 468999999999999999999999999988762 2333444567899999999977544 555556665433 212111
Q ss_pred EEeeCCceEEEEecCCCEEEEEEcCC----------eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE-----e
Q 002519 755 RVFKGGTAQMRFQPHLGRYLAAAAEN----------VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-----S 819 (913)
Q Consensus 755 ~~~~~~~~~v~~s~~~~~ll~~~~dg----------~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~-----s 819 (913)
....-.. .-.+ .+.++.++... .....+....+.......-.+.-++|+|--||.++++. .
T Consensus 144 ~E~~L~~---d~~~-~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 144 AEKPLDA---DDER-KSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred hcccccc---cccc-ccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence 1110000 0000 01122222211 11111111110000000111223578999999999884 3
Q ss_pred C-CeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCcEE----EEcccCCCeEEE
Q 002519 820 E-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMSENKTM----TLTAHEGLIAAL 891 (913)
Q Consensus 820 ~-d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~I~iwd~~~~~~~----~~~~h~~~V~~l 891 (913)
. ..|+|||.. + ..-..-....+.-.+++|-|.|..+++... |+.|.+|.-+..+.- .+......|..+
T Consensus 220 ~~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred CceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence 3 289999976 2 111111122344568899999998888754 457999986654322 233344459999
Q ss_pred EEeCCCCEEEE---EeCCCcEEEe
Q 002519 892 AVSTETGYVAS---ASHDKFVKLW 912 (913)
Q Consensus 892 ~~spdg~~Las---gs~DG~I~IW 912 (913)
+|+.++.+||+ +.....|++|
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred eecCCCCceeeeecccccceEEEE
Confidence 99999999887 4444559998
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00022 Score=81.47 Aligned_cols=194 Identities=18% Similarity=0.234 Sum_probs=125.6
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeC---C-CeEEEEEcCCCCce-eEEeccCCCCeEEEEEcCCCCeEEEEEeC
Q 002519 665 LKSKTNLEEHSSLITDVRFSPSMPRLATSSF---D-KTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDG 739 (913)
Q Consensus 665 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---D-g~V~Iwdl~~~~~~-~~~~~~h~~~V~sl~fsp~~~~ll~sgs~ 739 (913)
+.....+..-...+..-+|++++..++..+. . ..|.++|++++... +..+.++.. ...|+|||+.++++...
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~r 258 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSR 258 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECC
Confidence 4555556556667888899999987765533 2 35899999874432 333344433 47899999999999888
Q ss_pred CCc--EEEEEcCCCeeeEEe--eCCceEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCC
Q 002519 740 DGE--IRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSG 812 (913)
Q Consensus 740 Dg~--I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg 812 (913)
||. |+++|+..+...+.. .+....-.|+|+|.+++.++.. | .|.++|.+......... ....-..-.|+|||
T Consensus 259 dg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~~~~~~p~~SpdG 337 (425)
T COG0823 259 DGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SGGGNSNPVWSPDG 337 (425)
T ss_pred CCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cCCCCcCccCCCCC
Confidence 876 556677666533311 2233456799999998888763 3 67788888775533222 22222277899999
Q ss_pred CEEEEEeC--C--eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 002519 813 ELLASVSE--D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 866 (913)
Q Consensus 813 ~~l~s~s~--d--~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg 866 (913)
++|+..+. + .|.+.|+.++.. +..+ ........-.|.++++.++..+..+
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~~---~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGGK---IRIL-TSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCCc---EEEc-cccccCCCCCcCCCCceEEEeccCC
Confidence 98888773 2 477777766643 2221 1233344556788888777666544
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0011 Score=77.99 Aligned_cols=242 Identities=13% Similarity=0.142 Sum_probs=136.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCC-----eE-EEEECCCCCEEEEEe---------CCCeEEEEEcCCCCce
Q 002519 646 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-----IT-DVRFSPSMPRLATSS---------FDKTVRVWDADNPGYS 710 (913)
Q Consensus 646 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~-----V~-~l~fspdg~~Lasgs---------~Dg~V~Iwdl~~~~~~ 710 (913)
..++.++.++.|+-+|.++++.+-.+...... |. ...+. +.+++.++ .+|.|..+|..+ ++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~T-G~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVET-GKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCC-Cce
Confidence 57778888999999999999988777644321 11 11222 23455553 367889999988 444
Q ss_pred eEEeccC-CC-------------------Ce-EEEEEcCCCCeEEEEEeCCC------------------cEEEEEcCCC
Q 002519 711 LRTFMGH-SA-------------------SV-MSLDFHPNKDDLICSCDGDG------------------EIRYWSINNG 751 (913)
Q Consensus 711 ~~~~~~h-~~-------------------~V-~sl~fsp~~~~ll~sgs~Dg------------------~I~iwdl~~~ 751 (913)
+-.+... .. .| ....+.+.++.+ +.++.++ .|..+|++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V-~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLV-YVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEE-EEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 4433321 10 01 123333334434 4555454 7999999999
Q ss_pred eeeEEeeCCce---------EEEEe----cCCC---EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEE
Q 002519 752 SCTRVFKGGTA---------QMRFQ----PHLG---RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL 815 (913)
Q Consensus 752 ~~~~~~~~~~~---------~v~~s----~~~~---~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l 815 (913)
+.+..+..... ...+. .++. .+++++.+|.+..+|.++++.+...... ...++.+| +.++
T Consensus 267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vy 342 (488)
T cd00216 267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVY 342 (488)
T ss_pred CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEE
Confidence 99887653211 01111 1222 4667778999999999999988876421 11223333 2222
Q ss_pred EEE-----------------eCC-eEEEEECCCCCCCceEEEeecCC--------CceEEEEEeCCCCEEEEEEcCCeEE
Q 002519 816 ASV-----------------SED-SVRVWTVGSGSEGECVHELSCNG--------NKFHSCVFHPTYPSLLVIGCYQSLE 869 (913)
Q Consensus 816 ~s~-----------------s~d-~I~vwdl~~~~~~~~i~~~~~~~--------~~i~~l~~sp~g~~l~s~s~dg~I~ 869 (913)
+.. ..+ .|.-+|+.+++ .+....... .........-.+..|++++.||.|+
T Consensus 343 v~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~---~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ 419 (488)
T cd00216 343 LGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK---VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFR 419 (488)
T ss_pred EccccccccCcccccCCCCCCCceEEEEEeCCCCc---EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEE
Confidence 211 112 67777777663 333222210 1111111122556789999999999
Q ss_pred EEECCCCcEEEEcccCCCeEE--EEEeCCCC
Q 002519 870 LWNMSENKTMTLTAHEGLIAA--LAVSTETG 898 (913)
Q Consensus 870 iwd~~~~~~~~~~~h~~~V~~--l~~spdg~ 898 (913)
.+|..+++++......+.+.+ +.+..+++
T Consensus 420 ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~ 450 (488)
T cd00216 420 AFDATTGKELWKFRTPSGIQATPMTYEVNGK 450 (488)
T ss_pred EEECCCCceeeEEECCCCceEcCEEEEeCCE
Confidence 999999998833333344332 23344554
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00057 Score=78.35 Aligned_cols=222 Identities=12% Similarity=0.138 Sum_probs=119.5
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE-EcCCC
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW-DADNP 707 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw-dl~~~ 707 (913)
+....-....+.++|+|++++++ .||...||.....+.... +.....+|... ..+|+-...++|.|+ ++++
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~- 99 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKN- 99 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCcc-
Confidence 33445568899999999999995 588888888555444332 23456789884 457777778889996 4432
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC-ceEEEEecCCCEEEEEEcCCeEEEEE
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-~~~v~~s~~~~~ll~~~~dg~I~i~D 786 (913)
...+.+.. ...+..|-. |. +|+..+ ++.|.+||+.+++.++.+... +..+.|++++..++..+.+ .+.|++
T Consensus 100 -~~~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 100 -EVVKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp --TT------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred -ccceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 22222221 123444433 44 443444 458999999999999999877 4899999998877777654 566655
Q ss_pred CCCC-----------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCC
Q 002519 787 AETQ-----------ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 855 (913)
Q Consensus 787 ~~t~-----------~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~ 855 (913)
.+.. .....+..-...|.+.+|..+ .|+-.+...|+. +..| +...+..+ ..++.-+.+.+.
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkY--l~~G-e~~~i~~l---d~~~yllgy~~~ 243 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKY--LVNG-ETGIIAHL---DKPLYLLGYLPK 243 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEE--EETT-EEEEEEE----SS--EEEEEETT
T ss_pred ecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEE--EEcC-CcceEEEc---CCceEEEEEEcc
Confidence 4332 122222222467999999876 444444446666 3222 22233333 556777778887
Q ss_pred CCEEEEEEcCCeEEEEECC
Q 002519 856 YPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 856 g~~l~s~s~dg~I~iwd~~ 874 (913)
.+.+++...++.|..+.+.
T Consensus 244 ~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 244 ENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TTEEEEE-TT--EEEEE--
T ss_pred CCEEEEEECCCCEEEEEEC
Confidence 7788888888888877665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0027 Score=64.90 Aligned_cols=140 Identities=13% Similarity=0.059 Sum_probs=88.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEE-
Q 002519 645 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS- 723 (913)
Q Consensus 645 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~s- 723 (913)
.++++.|+..+.+.-.|..+|+.+..-.- ...|.+-+.- -|+.++.|+..|.+++.+++++ ..+..+... +.|.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tG-s~~w~f~~~-~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTG-SQIWNFVIL-ETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecch-hheeeeeeh-hhhccc
Confidence 45777788888888888888876654321 1222222221 3668999999999999999984 333333321 12222
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCce---EEEEecCCCEEEEEEcCCeEEEEECCC
Q 002519 724 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---QMRFQPHLGRYLAAAAENVVSILDAET 789 (913)
Q Consensus 724 l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---~v~~s~~~~~ll~~~~dg~I~i~D~~t 789 (913)
....+++ .+|..|+.|++.+..|.++..++...+.+.. .-++.+..+.++++...|.|.-...+.
T Consensus 99 a~~d~~~-glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 99 AQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred eEEcCCC-ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 2233444 4788999999999999999999888764322 234556556666666666555444443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0033 Score=68.15 Aligned_cols=237 Identities=14% Similarity=0.158 Sum_probs=142.7
Q ss_pred EEEEEecCCCEEEEEe----------CCCcEEEEECCCCceeeEeccCCC-------CeEEEEECCCCCEEEEEeC--CC
Q 002519 637 ICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFSPSMPRLATSSF--DK 697 (913)
Q Consensus 637 ~~l~fspdg~~Lasgs----------~Dg~V~vwd~~~~~~~~~l~~h~~-------~V~~l~fspdg~~Lasgs~--Dg 697 (913)
-.+.++||++.+++++ ..-.|.+||..+......+.-..+ ....+.++.|+++++.... --
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3466789999888754 344799999999887776543322 2234677888888877654 45
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeeEEe----eCCc----eEEEEec
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVF----KGGT----AQMRFQP 768 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~-~~~~~~~~----~~~~----~~v~~s~ 768 (913)
.|.|.|+.. ++.+..+.. .++ ....|.++.-|.+-|.||.+....+. .|+..... .... ..-.+..
T Consensus 119 SVtVVDl~~-~kvv~ei~~-PGC---~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 119 SVTVVDLAA-KKVVGEIDT-PGC---WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp EEEEEETTT-TEEEEEEEG-TSE---EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred eEEEEECCC-CceeeeecC-CCE---EEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence 688889887 555554432 221 12223333345577779999998887 45443221 1111 1223445
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEE--EecCC------C----CCeEEEEEcCCCCEEEEE-e-------CC---eEEE
Q 002519 769 HLGRYLAAAAENVVSILDAETQACRL--SLQGH------T----KPIDSVCWDPSGELLASV-S-------ED---SVRV 825 (913)
Q Consensus 769 ~~~~ll~~~~dg~I~i~D~~t~~~~~--~l~~h------~----~~V~sl~~spdg~~l~s~-s-------~d---~I~v 825 (913)
.++.++..+.+|.|+-.|+....... .+..- . +...-+++++....|++. . .+ .|.+
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 66778888999999999887764322 22111 1 123347787755544432 1 12 4777
Q ss_pred EECCCCCCCceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEEc
Q 002519 826 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMTLT 882 (913)
Q Consensus 826 wdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~-~l~s~s-~dg~I~iwd~~~~~~~~~~ 882 (913)
||+.++ +.+..+.. ...+.++.++.+.+ +|++.+ .++.|.|||..+++.+...
T Consensus 274 ~D~~t~---krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 274 YDLKTH---KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EETTTT---EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EECCCC---eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 888776 55555554 34577888888765 555554 4689999999999988433
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.001 Score=75.56 Aligned_cols=219 Identities=15% Similarity=0.097 Sum_probs=149.2
Q ss_pred CCEEEEEEecCCCEE-EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEEcCCCCc
Q 002519 634 SKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGY 709 (913)
Q Consensus 634 ~~V~~l~fspdg~~L-asgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~Iwdl~~~~~ 709 (913)
..-.+++++++++.+ ++...++.|.+.|..+.+....+..-. ....++|+++++.++.+.. +++|.+.|..+ ..
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-Ce
Confidence 345578888888744 444456899999988776666654333 6778999999988877765 68888888887 44
Q ss_pred eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE-E------eeCCceEEEEecCCCEEEEEEcC---
Q 002519 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-V------FKGGTAQMRFQPHLGRYLAAAAE--- 779 (913)
Q Consensus 710 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~-~------~~~~~~~v~~s~~~~~ll~~~~d--- 779 (913)
.+.+...-..+ ..+++.|++..++++-..++.|.++|.......+ . .......+.+.+++.++++....
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 44444333334 8899999999888777789999999988776663 1 11234568899999977776664
Q ss_pred CeEEEEECCCCeEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCCceEEEeecCCCceEEEEEeCC
Q 002519 780 NVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 855 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~~-~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~ 855 (913)
+.+...|..++........-.. ....+.++|+|+++.+.... .+.+.|..+......+.........+..+++.+.
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 5999999999877665221112 45678999999987777444 8888888765332222222222233445555443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00099 Score=75.06 Aligned_cols=227 Identities=18% Similarity=0.199 Sum_probs=131.1
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEe-ccC----------------CCCeEEEEECCCCCEEEEEeC
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-EEH----------------SSLITDVRFSPSMPRLATSSF 695 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l-~~h----------------~~~V~~l~fspdg~~Lasgs~ 695 (913)
...+....|||||+.||... ++.|+++++.++...... .+. -+.-..+.|+||+++||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 67889999999999999886 678999998776433221 120 112356889999999987754
Q ss_pred C-Ce-----------------------------------EEEEEcCCCCce-eEEe---ccCCCCeEEEEEcCCCCeEEE
Q 002519 696 D-KT-----------------------------------VRVWDADNPGYS-LRTF---MGHSASVMSLDFHPNKDDLIC 735 (913)
Q Consensus 696 D-g~-----------------------------------V~Iwdl~~~~~~-~~~~---~~h~~~V~sl~fsp~~~~ll~ 735 (913)
| .. +.|+|+.++... +... ..-...+..+.|.+++..+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 3 11 333444432211 1111 123456778899988774443
Q ss_pred -EEeCC---CcEEEEEcCCCeeeEEeeC-------CceEEEEe-cCCCEEEEEE-cCC--eEEEEECCCCeEEEEecCCC
Q 002519 736 -SCDGD---GEIRYWSINNGSCTRVFKG-------GTAQMRFQ-PHLGRYLAAA-AEN--VVSILDAETQACRLSLQGHT 800 (913)
Q Consensus 736 -sgs~D---g~I~iwdl~~~~~~~~~~~-------~~~~v~~s-~~~~~ll~~~-~dg--~I~i~D~~t~~~~~~l~~h~ 800 (913)
....+ ..+.++|..++.+...+.. ......+. +++..++..+ .+| .|++++...+... .+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence 33333 3467778877665443321 12345554 6666555444 466 5667787777644 455445
Q ss_pred CCeEE-EEEcCCCCEEE-EEeCC-----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 002519 801 KPIDS-VCWDPSGELLA-SVSED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 864 (913)
Q Consensus 801 ~~V~s-l~~spdg~~l~-s~s~d-----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~ 864 (913)
-.|.. +.|+++++.|+ ++..+ .|...++..+ ..+..+.+.......+.|+|++++++..+.
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 55644 67888877444 44432 4555566512 344445544444469999999998877654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0016 Score=68.59 Aligned_cols=197 Identities=16% Similarity=0.232 Sum_probs=110.3
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----CCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002519 713 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAE 788 (913)
Q Consensus 713 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~ 788 (913)
.+.+-...+..|.|.|+.+.|+++....+.|..++.. ++.++.+. +....+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4445566799999999999999999999999999975 77777664 245668887655444443347889888873
Q ss_pred CC------eEEEEec-----CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC--CCCCceEEE------eecCCCceE
Q 002519 789 TQ------ACRLSLQ-----GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS--GSEGECVHE------LSCNGNKFH 848 (913)
Q Consensus 789 t~------~~~~~l~-----~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~--~~~~~~i~~------~~~~~~~i~ 848 (913)
.. ..+..+. .+...+..++|++.++.|+++-+. -..||.+.. ......+.. .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 31 1111121 244568999999987766666655 556666653 111111111 112234578
Q ss_pred EEEEeCCCCEEEEEEc-CCeEEEEECCCCcEE---EEcc--c-----CCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 849 SCVFHPTYPSLLVIGC-YQSLELWNMSENKTM---TLTA--H-----EGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s~-dg~I~iwd~~~~~~~---~~~~--h-----~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
.+.++|....|++-+. ...|.++| ..|+.+ .+.. | -..--.|+|.++|++.+ .++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 8999998766666555 46888889 555554 2322 1 12467899999996555 4566666665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0021 Score=72.73 Aligned_cols=258 Identities=13% Similarity=0.104 Sum_probs=134.4
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC---CC---
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN---PG--- 708 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~---~~--- 708 (913)
.|+++.|+++..-||+|...|.|.||.+...+... ......-....|.+- ...++.-.|-|+.. ..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999999999999999999999876432221 000001111111110 00111223333332 11
Q ss_pred --ceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--C---------CceEEEEec-----CC
Q 002519 709 --YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--G---------GTAQMRFQP-----HL 770 (913)
Q Consensus 709 --~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~---------~~~~v~~s~-----~~ 770 (913)
.+...+....+.|++++.+.-| +++.|..+|.+.|.|++....+..-. . .+.++.|.. ++
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 2334445567899999998554 88899999999999999887765521 1 233455541 22
Q ss_pred ---CEEEEEEcCCeEEEEECC--C-Ce----EEEEecCCCCCeEEEE-EcCC---------------------CCEEEEE
Q 002519 771 ---GRYLAAAAENVVSILDAE--T-QA----CRLSLQGHTKPIDSVC-WDPS---------------------GELLASV 818 (913)
Q Consensus 771 ---~~ll~~~~dg~I~i~D~~--t-~~----~~~~l~~h~~~V~sl~-~spd---------------------g~~l~s~ 818 (913)
-.+++|+..|.+.+|.+. . +. .......+.+.|..|+ |+.+ .-+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 367888889999999764 1 21 1122224556666665 3221 1267777
Q ss_pred eCCeEEEEECCCCCCCceEEEeecCCCceEEEEE-----eCCCCEEEEEEcCCeEEEEECCCCcEE-EEcc----cCCCe
Q 002519 819 SEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF-----HPTYPSLLVIGCYQSLELWNMSENKTM-TLTA----HEGLI 888 (913)
Q Consensus 819 s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~-----sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~----h~~~V 888 (913)
++..++|+...+. +..+...........+++ ...+..|++...+|.|++|.+...+.+ .+.- ....+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 7779999998765 333333322223334445 235677888899999999999988877 2222 22245
Q ss_pred EEEEEeCCCCEEEEEeC
Q 002519 889 AALAVSTETGYVASASH 905 (913)
Q Consensus 889 ~~l~~spdg~~Lasgs~ 905 (913)
...+|+++|..++-.+.
T Consensus 310 ~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT-EE-TTS-EEEE-SS
T ss_pred cccEECCCCCEEEEeCc
Confidence 56677888887766554
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0086 Score=70.88 Aligned_cols=184 Identities=11% Similarity=0.059 Sum_probs=112.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCC-CCeE---E-------EEECCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 002519 645 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLIT---D-------VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 713 (913)
Q Consensus 645 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~V~---~-------l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~ 713 (913)
+.+|++++.++.|+-+|..+++.+-.+.... ..+. + +++ .+..|+.++.|+.|...|.++ ++.+-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~T-Gk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKT-GKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCC-CCEEee
Confidence 4477777788899999999999887765321 1111 1 122 234677888899999999988 554443
Q ss_pred ecc--CC--CCeEE-EEEcCCCCeEEEEEe-----CCCcEEEEEcCCCeeeEEeeCCc----------------------
Q 002519 714 FMG--HS--ASVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGGT---------------------- 761 (913)
Q Consensus 714 ~~~--h~--~~V~s-l~fsp~~~~ll~sgs-----~Dg~I~iwdl~~~~~~~~~~~~~---------------------- 761 (913)
+.. +. ..+.+ -.+. ++.+++..+ .+|.|..+|.++++.+..+....
T Consensus 146 ~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred cccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 321 11 11111 1111 233443222 26899999999998876643210
Q ss_pred -------------eEEEEecCCCEEEEEEcC-----C-----------eEEEEECCCCeEEEEecCCCCCe---------
Q 002519 762 -------------AQMRFQPHLGRYLAAAAE-----N-----------VVSILDAETQACRLSLQGHTKPI--------- 803 (913)
Q Consensus 762 -------------~~v~~s~~~~~ll~~~~d-----g-----------~I~i~D~~t~~~~~~l~~h~~~V--------- 803 (913)
..+.+.+..+.++.+... + .|.-.|+++++.+..+......+
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 023566666777666521 1 67788999999988876522211
Q ss_pred EEEEEcCCCC---EEEEEeCC-eEEEEECCCCCC
Q 002519 804 DSVCWDPSGE---LLASVSED-SVRVWTVGSGSE 833 (913)
Q Consensus 804 ~sl~~spdg~---~l~s~s~d-~I~vwdl~~~~~ 833 (913)
.-+.+..+|+ .|+.+..+ .+.++|.++++.
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 1222334666 67777777 999999988743
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0085 Score=64.85 Aligned_cols=222 Identities=16% Similarity=0.184 Sum_probs=124.0
Q ss_pred cCCCEEEEEeCCCcEEEEECC-CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEE--------
Q 002519 643 SDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-------- 713 (913)
Q Consensus 643 pdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~-------- 713 (913)
..++.|+.|+.+| |+++++. ..+...... ...|..+...++-+.|++-+ |+.|+++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4577999999888 9999983 333333332 22399999999888777766 599999999752211100
Q ss_pred -----eccCCCCeEEEE--EcCCCCeEEEEEeCCCcEEEEEcCCC-----eeeEEee--CCceEEEEecCCCEEEEEEcC
Q 002519 714 -----FMGHSASVMSLD--FHPNKDDLICSCDGDGEIRYWSINNG-----SCTRVFK--GGTAQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 714 -----~~~h~~~V~sl~--fsp~~~~ll~sgs~Dg~I~iwdl~~~-----~~~~~~~--~~~~~v~~s~~~~~ll~~~~d 779 (913)
.......+..++ -...+...++ +.....|.+|..... +..+.+. .....+.|. ++.++++. .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-S 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-C
Confidence 111223344444 1123344443 344558888887653 3334443 455667777 45555554 5
Q ss_pred CeEEEEECCCCeEEEEecCC------------CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCce
Q 002519 780 NVVSILDAETQACRLSLQGH------------TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKF 847 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h------------~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i 847 (913)
+...++|+.++.....+... ..++..+.. +++++|++ .++.-.+.|.. |.... ...+.- ....
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv~~~-G~~~r-~~~i~W-~~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFVNKN-GEPSR-KSTIQW-SSAP 231 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEEcCC-CCcCc-ccEEEc-CCch
Confidence 56888899876544333211 123333333 34556654 33333334442 32211 122222 2244
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE
Q 002519 848 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT 880 (913)
Q Consensus 848 ~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~ 880 (913)
..+++ ...+|++.+. +.|.||++.+++++.
T Consensus 232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred hEEEE--ECCEEEEECC-CEEEEEECcCCcEEE
Confidence 45555 3346666555 569999999998773
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00023 Score=82.35 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=64.9
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 002519 636 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 636 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 705 (913)
+++++|+|..-.||.|-.-|.+.||...+.+.......|..+|..+.|+++|..|+++..-|.|.+|..+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5669999999899999999999999999888888888999999999999999999999999999999887
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0048 Score=66.79 Aligned_cols=214 Identities=14% Similarity=0.148 Sum_probs=121.6
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE---------
Q 002519 685 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--------- 755 (913)
Q Consensus 685 pdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~--------- 755 (913)
..++.|+.|+.+| |.++++.......+... ...|..|...++-+.+++-+ |+.|+++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence 3577999999999 99999943233333332 23399999998877666443 5999999987654333
Q ss_pred ------EeeCCceEEEEe----cCCCEEEEEEcCCeEEEEECCCC-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002519 756 ------VFKGGTAQMRFQ----PHLGRYLAAAAENVVSILDAETQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSE 820 (913)
Q Consensus 756 ------~~~~~~~~v~~s----~~~~~ll~~~~dg~I~i~D~~t~-----~~~~~l~~h~~~V~sl~~spdg~~l~s~s~ 820 (913)
.+........|. ..+...+++.....|.+|..... +...++. -...+.+++|. ++.|+.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 111111222232 34456677777778888876553 3444444 34778899998 667888888
Q ss_pred CeEEEEECCCCCCCceEEEeecC----------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeE
Q 002519 821 DSVRVWTVGSGSEGECVHELSCN----------GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIA 889 (913)
Q Consensus 821 d~I~vwdl~~~~~~~~i~~~~~~----------~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~ 889 (913)
+...+.|+.++.. ..+...... ..++..+.. +++.+|++ . +..-.+.|....... ....-...+.
T Consensus 157 ~~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~-~~~g~fv~~~G~~~r~~~i~W~~~p~ 232 (275)
T PF00780_consen 157 KGFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-Y-DNIGVFVNKNGEPSRKSTIQWSSAPQ 232 (275)
T ss_pred CceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-e-cceEEEEcCCCCcCcccEEEcCCchh
Confidence 8889999986533 222211111 112222233 34455543 2 333333444332221 1111223455
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 890 ALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 890 ~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.+++.. .||+..+.+ .|.||+
T Consensus 233 ~~~~~~--pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 233 SVAYSS--PYLIAFSSN-SIEVRS 253 (275)
T ss_pred EEEEEC--CEEEEECCC-EEEEEE
Confidence 555533 377766654 488874
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.016 Score=66.34 Aligned_cols=188 Identities=14% Similarity=0.155 Sum_probs=98.2
Q ss_pred cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc------eeEEeccCCCCeEEEEEcCC
Q 002519 656 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPN 729 (913)
Q Consensus 656 ~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~------~~~~~~~h~~~V~sl~fsp~ 729 (913)
.|.||+.. |+.+..+.-..+.|.++.|+.+ ..|++...||++++||+.. .. .+....-....|..+.+..+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCC
Confidence 48888864 5666666655589999999875 4666777899999999963 22 01111111122222233323
Q ss_pred CCeEEEEEeCCCcEEEEEcCCCe-eeEEe---eCCce----------EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 002519 730 KDDLICSCDGDGEIRYWSINNGS-CTRVF---KGGTA----------QMRFQPHLGRYLAAAAENVVSILDAETQACRLS 795 (913)
Q Consensus 730 ~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~---~~~~~----------~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~ 795 (913)
| +++. ..++.|.+.+-.... ..+.+ ..... ...+..+....+....++.+.+.+....+.
T Consensus 139 G--ivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 139 G--IVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--- 212 (410)
T ss_pred C--EEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---
Confidence 3 3322 234444443322211 11111 11000 012333334444444445555444332211
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecC-CCceEEEEEeCCC
Q 002519 796 LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTY 856 (913)
Q Consensus 796 l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~-~~~i~~l~~sp~g 856 (913)
+. ..+++..+++||+|++||....+ .+.|.+..-. +++.++... ......+.|.-+.
T Consensus 213 i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 213 ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCC
Confidence 11 23679999999999999988887 7777765332 344444433 3345566665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00029 Score=79.72 Aligned_cols=228 Identities=15% Similarity=0.142 Sum_probs=116.7
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEe--cc------CCCCeEEEEECC-----CC-
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EE------HSSLITDVRFSP-----SM- 687 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l--~~------h~~~V~~l~fsp-----dg- 687 (913)
.|.....++...+.|++++.|.-| ++|.|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 477888888889999999998555 9999999999999999876666542 22 345688888852 33
Q ss_pred --CEEEEEeCCCeEEEEEcCC-C-CceeEEec----cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC
Q 002519 688 --PRLATSSFDKTVRVWDADN-P-GYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 759 (913)
Q Consensus 688 --~~Lasgs~Dg~V~Iwdl~~-~-~~~~~~~~----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~ 759 (913)
-+|++|...|.+.+|.+.- . +.....+. .+.+.|.. |..+|..++........
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~-------------------I~~i~~~~G~~a~At~~ 214 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILS-------------------IIPINADTGESALATIS 214 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----E-------------------EEEEETTT--B-B-BHH
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEE-------------------EEEEECCCCCcccCchh
Confidence 3688888899999998752 1 11111110 12222222 22333333332111000
Q ss_pred CceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEc-----CCCCEEEEEeCC-eEEEEECCCCCC
Q 002519 760 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD-----PSGELLASVSED-SVRVWTVGSGSE 833 (913)
Q Consensus 760 ~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~s-----pdg~~l~s~s~d-~I~vwdl~~~~~ 833 (913)
....+.-......+++.+.+..++++..-+.+..++..........+++. ..+..|++-..+ .|++|.+-.-
T Consensus 215 ~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-- 292 (395)
T PF08596_consen 215 AMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-- 292 (395)
T ss_dssp HHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---
T ss_pred HhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc--
Confidence 00000000011346677778999999998887776655332334445553 245567777777 9999999654
Q ss_pred CceEEEeecCC----CceEEEEEeCCCCEEEEEEcCC--eEEEEE
Q 002519 834 GECVHELSCNG----NKFHSCVFHPTYPSLLVIGCYQ--SLELWN 872 (913)
Q Consensus 834 ~~~i~~~~~~~----~~i~~l~~sp~g~~l~s~s~dg--~I~iwd 872 (913)
+.+..+.... ..+..++++++|..++..+... .+.+|.
T Consensus 293 -kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~ 336 (395)
T PF08596_consen 293 -KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWG 336 (395)
T ss_dssp --EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES
T ss_pred -hHhhcccCCCccccccccccEECCCCCEEEEeCcccEEEEEEEc
Confidence 4444444321 2345677888998766665443 344444
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.043 Score=57.51 Aligned_cols=271 Identities=11% Similarity=0.044 Sum_probs=150.9
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccC--CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCce
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 710 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~ 710 (913)
.+.+.++.|+.+ ++..+..+.-++|+|+.+......+..- .+.-.++.. .|++...+..|.-+.+.|+.++..+
T Consensus 86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence 456777777755 6777777888999999865544333221 133344444 5788888887666889999876655
Q ss_pred eE--EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---eeEEeeCCceEEEEecCCCEEEEEEcCCeEEEE
Q 002519 711 LR--TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 785 (913)
Q Consensus 711 ~~--~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~---~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~ 785 (913)
.. .+.........++.+ |+ ..+.+..|+.+.|.|+.... .+.....+...-..++.+++.++...+..+.+.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvliv 238 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIV 238 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEE
Confidence 43 233333344567776 33 34466779999999997653 333333332333344445566666667778888
Q ss_pred ECCCCeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEE
Q 002519 786 DAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 862 (913)
Q Consensus 786 D~~t~~~~~~l~~--h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~ 862 (913)
|..+.+....+.. ...++.--.|.-.+++......+ .+-+-|+.+.........+...+..-..+.. .+.++..+
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yia 316 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIA 316 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEec
Confidence 8877764443322 22222211333346666666666 6777777655433333333222222222222 22333333
Q ss_pred EcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 863 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 863 s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
..+ ...+.+....+.. ...+...-+.+++.+-+.+++.+...++-+.||+
T Consensus 317 dkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 317 DKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred cCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 333 3444444433322 2222233344455555566788888899999985
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0021 Score=71.46 Aligned_cols=207 Identities=14% Similarity=0.092 Sum_probs=115.3
Q ss_pred eEEEEEcCCCCceeEEec-cCCCCeEEEE---EcCC---CCeEEEEEeC----------CCcEEEEEcCCC-----eee-
Q 002519 698 TVRVWDADNPGYSLRTFM-GHSASVMSLD---FHPN---KDDLICSCDG----------DGEIRYWSINNG-----SCT- 754 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~-~h~~~V~sl~---fsp~---~~~ll~sgs~----------Dg~I~iwdl~~~-----~~~- 754 (913)
.|+|.|..+ ...+..+. .....+++++ |..+ ...+|+.|.. .|.|.++++... +..
T Consensus 3 ~i~l~d~~~-~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTT-FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTT-SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCC-CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 477777766 33333332 2233344443 3322 1456665543 288999999984 222
Q ss_pred ---EEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002519 755 ---RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA-CRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTV 828 (913)
Q Consensus 755 ---~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~-~~~~l~~-h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl 828 (913)
..+++.+.+++.. +++ ++++..+.|.+|++...+ .+..-.. ....+.++... +++|++|... .|.++.+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 2234555555544 566 555556899999988776 3332221 22356666555 5688888766 7777655
Q ss_pred CCCCC-CceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-------C--cEE--EEcccCCCeEEE---EE
Q 002519 829 GSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-------N--KTM--TLTAHEGLIAAL---AV 893 (913)
Q Consensus 829 ~~~~~-~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~-------~--~~~--~~~~h~~~V~~l---~~ 893 (913)
+.... ...+. -......++++.|-.+++.++++..+|.|.++.... + +.. ........|+++ ++
T Consensus 157 ~~~~~~l~~va-~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVA-RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEE-EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EccCCEEEEEE-ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 43211 12222 222355688888886667999999999999997753 2 222 233345667777 44
Q ss_pred eCC--CC------EEEEEeCCCcEEE
Q 002519 894 STE--TG------YVASASHDKFVKL 911 (913)
Q Consensus 894 spd--g~------~Lasgs~DG~I~I 911 (913)
.+. +. .++.++.+|.|.+
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eecCCCCcccccceEEEEecCCEEEE
Confidence 441 22 4778888998874
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.038 Score=67.62 Aligned_cols=238 Identities=8% Similarity=0.000 Sum_probs=123.0
Q ss_pred CEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC------CeEEEEE
Q 002519 635 KVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWD 703 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~D-----g~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~V~Iwd 703 (913)
.+..+.|||||++||.+... ..|+|.|+.+++.+...-.... ..++|.+|++.|+.+..+ ..|++|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678899999988876432 3688999988764332222222 469999999877665442 3688888
Q ss_pred cCCCC-ceeEEeccCCCCeE-EEEEcCCCCeEEEEEeC--CCcEEEEEcC--CCeeeEEeeC-CceEEEEecCCCEEEEE
Q 002519 704 ADNPG-YSLRTFMGHSASVM-SLDFHPNKDDLICSCDG--DGEIRYWSIN--NGSCTRVFKG-GTAQMRFQPHLGRYLAA 776 (913)
Q Consensus 704 l~~~~-~~~~~~~~h~~~V~-sl~fsp~~~~ll~sgs~--Dg~I~iwdl~--~~~~~~~~~~-~~~~v~~s~~~~~ll~~ 776 (913)
+.++. .....+........ .+..+.++..+++.+.. ++.+.+|+.. .+.....+.. ......+...++.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~ 285 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLR 285 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEE
Confidence 88742 22333433333333 33334477766644433 4678998853 3332222221 11112222333455444
Q ss_pred EcC----CeEEEEECCC-CeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCCceEEEee-cCCCc
Q 002519 777 AAE----NVVSILDAET-QACRLSLQGHT-KPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELS-CNGNK 846 (913)
Q Consensus 777 ~~d----g~I~i~D~~t-~~~~~~l~~h~-~~V~sl~~spdg~~l~s~s~d---~I~vwdl~~~~~~~~i~~~~-~~~~~ 846 (913)
+.. ..|...++.. ++....+.... ..|..+.+. .+.++++...+ .+.+++...+ .+..+. .....
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~~ 360 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPAY 360 (686)
T ss_pred EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCce
Confidence 432 2444445542 22222223223 367888887 33455555545 5566665422 222222 11222
Q ss_pred eEEEEEe--CCCC-EEEEEEcC---CeEEEEECCCCcEE
Q 002519 847 FHSCVFH--PTYP-SLLVIGCY---QSLELWNMSENKTM 879 (913)
Q Consensus 847 i~~l~~s--p~g~-~l~s~s~d---g~I~iwd~~~~~~~ 879 (913)
+..+.++ +++. .+++.++. +.|+.||+.+++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 3333344 3444 33333332 58899998877644
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00015 Score=82.23 Aligned_cols=74 Identities=22% Similarity=0.290 Sum_probs=64.4
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 706 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 706 (913)
.....|.|++++|+.+.|+.|+.||.|++||...+... +....-..+.++|+|+|..|++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 57789999999999999999999999999998765333 334456688999999999999999999999999975
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=8.9e-06 Score=91.63 Aligned_cols=196 Identities=18% Similarity=0.234 Sum_probs=133.1
Q ss_pred CCeEEEEECCCC--CEEEEEeCCCeEEEEEcCCCCce-eEEeccCCCCeEEEEEcCCCCeEEEEEe----CCCcEEEEEc
Q 002519 676 SLITDVRFSPSM--PRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSI 748 (913)
Q Consensus 676 ~~V~~l~fspdg--~~Lasgs~Dg~V~Iwdl~~~~~~-~~~~~~h~~~V~sl~fsp~~~~ll~sgs----~Dg~I~iwdl 748 (913)
..+.|+++.-+. .++++|..+|.|.+-.++.+... .....++...+++++|.+-+..+|++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 446677765543 47888999999999988764433 4455678899999999987666776653 3678999999
Q ss_pred CCCe--ee--EEe----eCCceEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEecCCCCCeEEEEEcC-CCCEEEEE
Q 002519 749 NNGS--CT--RVF----KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA-CRLSLQGHTKPIDSVCWDP-SGELLASV 818 (913)
Q Consensus 749 ~~~~--~~--~~~----~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~-~~~~l~~h~~~V~sl~~sp-dg~~l~s~ 818 (913)
.++- .. ..| ..+...++|..+.+.+++|.....+.++|++... ....+ .+..|..+.++| .+.|+++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 8872 11 112 2245678899777888888888899999998432 11111 345677888899 78899988
Q ss_pred eCCeEEEEE-CCCCCCCceEEEeecCC----CceEEEEEeCCCC-EEEEEEcC-CeEEEEECCC
Q 002519 819 SEDSVRVWT-VGSGSEGECVHELSCNG----NKFHSCVFHPTYP-SLLVIGCY-QSLELWNMSE 875 (913)
Q Consensus 819 s~d~I~vwd-l~~~~~~~~i~~~~~~~----~~i~~l~~sp~g~-~l~s~s~d-g~I~iwd~~~ 875 (913)
.++.|.+|| .++-+. .+..+.... ..+..++|+|... .+++...| ++|++||+..
T Consensus 215 ~dg~iAiwD~~rnien--pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIEN--PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccCceeeccchhhhcc--HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 877999999 433221 111111112 2488899999654 34444444 6899999753
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.015 Score=67.16 Aligned_cols=217 Identities=13% Similarity=0.114 Sum_probs=121.2
Q ss_pred eEEEEECCCCCEEEEE-eCCC----eEEEEEcCCCCceeE-EeccCCCCeEEEEEcCCCCeEEEEEeCC----------C
Q 002519 678 ITDVRFSPSMPRLATS-SFDK----TVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGD----------G 741 (913)
Q Consensus 678 V~~l~fspdg~~Lasg-s~Dg----~V~Iwdl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~D----------g 741 (913)
+..++++||+++||.+ +..| .|+|+|+++ +..+. .+... ....+.|.+++..++++...+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 4467899999998766 3334 599999998 44333 22221 122399999988888776443 2
Q ss_pred cEEEEEcCCCeee--EEeeC--C---ceEEEEecCCCEEEEEEc---C-CeEEEEECCCC-----eEEEEecCCCCCeEE
Q 002519 742 EIRYWSINNGSCT--RVFKG--G---TAQMRFQPHLGRYLAAAA---E-NVVSILDAETQ-----ACRLSLQGHTKPIDS 805 (913)
Q Consensus 742 ~I~iwdl~~~~~~--~~~~~--~---~~~v~~s~~~~~ll~~~~---d-g~I~i~D~~t~-----~~~~~l~~h~~~V~s 805 (913)
.|++|.+.+.... ..|.. . ...+..+.++.++++... + ..|++.|+..+ ...............
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 3788888776432 34432 2 335778889888776554 2 46888898874 333333323333333
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECC-CCc
Q 002519 806 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMS-ENK 877 (913)
Q Consensus 806 l~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~I~iwd~~-~~~ 877 (913)
+... .+.+++....+ .|...++...........+..+...+.-..+...+.+|++...++ .|++|++. +..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4443 44444444443 566667766543223334444454433344444555666655443 89999999 555
Q ss_pred EEEEcc-cCCCeEEEEEeCCCC
Q 002519 878 TMTLTA-HEGLIAALAVSTETG 898 (913)
Q Consensus 878 ~~~~~~-h~~~V~~l~~spdg~ 898 (913)
...+.. -.+.|..+...+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-S
T ss_pred EeeecCCcceEEeccCCCCCCC
Confidence 443332 334455555555544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0047 Score=74.66 Aligned_cols=212 Identities=9% Similarity=0.114 Sum_probs=128.5
Q ss_pred CEEEEE-eCCCeEEEEEcCCCCceeEEeccCCCC-eEEEEEcC-----CCCeEEEEEeCCCcEEEEEcCCCe--eeE---
Q 002519 688 PRLATS-SFDKTVRVWDADNPGYSLRTFMGHSAS-VMSLDFHP-----NKDDLICSCDGDGEIRYWSINNGS--CTR--- 755 (913)
Q Consensus 688 ~~Lasg-s~Dg~V~Iwdl~~~~~~~~~~~~h~~~-V~sl~fsp-----~~~~ll~sgs~Dg~I~iwdl~~~~--~~~--- 755 (913)
+.|+.. .....|+-.|++. ++++..+..|... |..++-.. .....| .|-.+..|+.||.+-.. ++.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~-GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLER-GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ceEeecCCCCCceEEEecCC-CcEEEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeeccc
Confidence 344433 3467899999998 8888888877654 55543221 122233 67789999999998643 221
Q ss_pred -EeeC--CceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC--C
Q 002519 756 -VFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG--S 830 (913)
Q Consensus 756 -~~~~--~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~--~ 830 (913)
.+.. ...++ .....+++++|+.+|.|++||....+....|.+-..+|..|+.+.||++|++.+...|.+++.. .
T Consensus 572 k~Y~~~~~Fs~~-aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~~~~ 650 (794)
T PF08553_consen 572 KQYSSKNNFSCF-ATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTLIKD 650 (794)
T ss_pred cccccCCCceEE-EecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEeeec
Confidence 1111 12223 3344589999999999999996544444556677899999999999999999998877787752 1
Q ss_pred CC---------------C--CceEEEee----------cCCCceEEEEEeC---CCCEEEEEEcCCeEEEEECCC---C-
Q 002519 831 GS---------------E--GECVHELS----------CNGNKFHSCVFHP---TYPSLLVIGCYQSLELWNMSE---N- 876 (913)
Q Consensus 831 ~~---------------~--~~~i~~~~----------~~~~~i~~l~~sp---~g~~l~s~s~dg~I~iwd~~~---~- 876 (913)
+. . +..+..-. .....++...|+- .....++++....+.+|++.. +
T Consensus 651 g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~kV~~g~ 730 (794)
T PF08553_consen 651 GKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKKVKRGK 730 (794)
T ss_pred CCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHHHHhCCC
Confidence 10 0 01111000 1112233445542 124566666777999999742 2
Q ss_pred -cEEEEcccCCCeEEE--EEeCCCCEEEE
Q 002519 877 -KTMTLTAHEGLIAAL--AVSTETGYVAS 902 (913)
Q Consensus 877 -~~~~~~~h~~~V~~l--~~spdg~~Las 902 (913)
.+..+......|.+- .|..+.++|++
T Consensus 731 ~~~Y~ikry~~~V~~dnF~fg~d~~viva 759 (794)
T PF08553_consen 731 KDPYQIKRYDENVVADNFKFGSDKNVIVA 759 (794)
T ss_pred CCceEEEEcCCceEEccceeCCCCcEEEE
Confidence 344555555566554 34445444443
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0066 Score=67.07 Aligned_cols=240 Identities=13% Similarity=0.118 Sum_probs=117.6
Q ss_pred ECCCCceeeEeccCCCCeEEE-----EECCCCCEEEEEeC-CCe--EEEEEcCCCCceeEEeccCC-CCeEEEEEcCCCC
Q 002519 661 HTDTLKSKTNLEEHSSLITDV-----RFSPSMPRLATSSF-DKT--VRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKD 731 (913)
Q Consensus 661 d~~~~~~~~~l~~h~~~V~~l-----~fspdg~~Lasgs~-Dg~--V~Iwdl~~~~~~~~~~~~h~-~~V~sl~fsp~~~ 731 (913)
|..+|..+..+.........+ +|..||+.|+.++. ||. +.+.|+.+ ..+..+.... .......++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t--~~i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLAT--GEITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEccc--CEEEECccCCCCCccceEEecCCC
Confidence 556777777776544433333 56788987766655 554 55666665 3444444333 3233566778877
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeeEEeeC--Cce-EEEEe-cCCCEEEEEEc-----------------------CCeEEE
Q 002519 732 DLICSCDGDGEIRYWSINNGSCTRVFKG--GTA-QMRFQ-PHLGRYLAAAA-----------------------ENVVSI 784 (913)
Q Consensus 732 ~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~-~v~~s-~~~~~ll~~~~-----------------------dg~I~i 784 (913)
.+++.. .+..|+..|+++.+....+.. .-. ...|. ..+...+++.. ...|..
T Consensus 94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 666543 456889999999876555443 222 23443 22233333322 125666
Q ss_pred EECCCCeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC---e--EEEEECCCCCC-CceEEEeecCCCceEEEEEeCCCC
Q 002519 785 LDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED---S--VRVWTVGSGSE-GECVHELSCNGNKFHSCVFHPTYP 857 (913)
Q Consensus 785 ~D~~t~~~~~~l~~h~~~V~sl~~spdg~-~l~s~s~d---~--I~vwdl~~~~~-~~~i~~~~~~~~~i~~l~~sp~g~ 857 (913)
.|+.+++....+. ....+..+-|+|... +|+.|-++ . -|||-+++... ..+++.-. ....+..=-|.+||.
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGS 250 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS
T ss_pred EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCC
Confidence 7888887655554 456788999999655 66666655 3 37888765422 22222221 123344445899998
Q ss_pred EEEEEEc-----CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 858 SLLVIGC-----YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 858 ~l~s~s~-----dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
.|+.-+. +..|.-+|..+++...+.... ....+-.++||++++.=+.|
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCC
Confidence 8776543 336777888887655432222 34456667899887764444
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0099 Score=64.93 Aligned_cols=215 Identities=10% Similarity=0.102 Sum_probs=126.7
Q ss_pred EEECCCCCEEEEE-eCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-
Q 002519 681 VRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK- 758 (913)
Q Consensus 681 l~fspdg~~Lasg-s~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~- 758 (913)
..|.++...|+-+ -..+.|.-|+..++.. ..+. +...+.++.....+..|+ ++ +..+++++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g~Lv-~~--~~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGGRLI-AC--EHGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCCeEE-EE--ccccEEEeccCCceeEEecc
Confidence 3466676655444 4477888888875333 2232 233345555444444444 44 3456777776665533321
Q ss_pred -------CCceEEEEecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002519 759 -------GGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 820 (913)
Q Consensus 759 -------~~~~~v~~s~~~~~ll~~~~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~ 820 (913)
...+...+.+++...+.... -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+.+..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 12345778888666655443 134555554 45555555555566678999999997777766
Q ss_pred C--eEEEEECCC--CCCC--ceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEcccCCCeEEEE
Q 002519 821 D--SVRVWTVGS--GSEG--ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTAHEGLIAALA 892 (913)
Q Consensus 821 d--~I~vwdl~~--~~~~--~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~I~iwd~~~~~~~-~~~~h~~~V~~l~ 892 (913)
. .|..|++.. +... .....+....+..-.++...+|.+.+++...| .|.+|+.. ++++ .+.-....+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 4 777777652 2111 11222223345566777888888776555554 99999999 6666 4444447888888
Q ss_pred Ee-CCCCEEEEE
Q 002519 893 VS-TETGYVASA 903 (913)
Q Consensus 893 ~s-pdg~~Lasg 903 (913)
|- ++.+.|+..
T Consensus 262 FgG~~~~~L~iT 273 (307)
T COG3386 262 FGGPDLNTLYIT 273 (307)
T ss_pred EeCCCcCEEEEE
Confidence 85 444544433
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.013 Score=67.26 Aligned_cols=188 Identities=8% Similarity=0.101 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC-----CceEE----EEec
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQM----RFQP 768 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v----~~s~ 768 (913)
.|+||+.. +..+..+.-..+.|.++.|..+ ..|+ ....||.+++||+.... ...+.. .+... .+..
T Consensus 62 ~I~iys~s--G~ll~~i~w~~~~iv~~~wt~~-e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSS--GKLLSSIPWDSGRIVGMGWTDD-EELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCC--CCEeEEEEECCCCEEEEEECCC-CeEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence 47777775 3444444333378999999875 4455 55679999999987433 111111 11111 0122
Q ss_pred CCCEEEEEEcCCeEEEEECCCCe-EEEEe---cCCC-----C-CeE-EEEEcCCCCEEEEEeCC-eEEEEECCCCCCCce
Q 002519 769 HLGRYLAAAAENVVSILDAETQA-CRLSL---QGHT-----K-PID-SVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 836 (913)
Q Consensus 769 ~~~~ll~~~~dg~I~i~D~~t~~-~~~~l---~~h~-----~-~V~-sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~ 836 (913)
..+ +++...++.|.+..-.... ....+ .... . .+. ...++.+....+....+ .+.+.+-...
T Consensus 137 ~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~----- 210 (410)
T PF04841_consen 137 KNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF----- 210 (410)
T ss_pred CCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc-----
Confidence 233 3334445555554332221 11111 1100 0 000 12344444444444444 5554433211
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-Ec-ccCCCeEEEEEeCCCC
Q 002519 837 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-LT-AHEGLIAALAVSTETG 898 (913)
Q Consensus 837 i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~-~~-~h~~~V~~l~~spdg~ 898 (913)
..+. ..+++..+++||++++|+.-..+|.+.|...+-.+.+. +. .-......+.|.-+.-
T Consensus 211 -~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 211 -KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred -cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 0111 24689999999999999999999999998766555442 22 2234556666655543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.048 Score=64.60 Aligned_cols=145 Identities=12% Similarity=0.077 Sum_probs=85.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccC--C--CCeEE-EEECCCCCEEEEEe------CCCeEEEEEcCCCCceeEEe
Q 002519 646 KLLATGGHDKKAVLWHTDTLKSKTNLEEH--S--SLITD-VRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRTF 714 (913)
Q Consensus 646 ~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h--~--~~V~~-l~fspdg~~Lasgs------~Dg~V~Iwdl~~~~~~~~~~ 714 (913)
..|+.++.|+.|.-+|.++|+.+-..... . ..+++ -... ++ .|++++ .+|.|+.+|.++ ++.+-.+
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~T-G~~lW~~ 197 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKT-GKLVWRR 197 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCC-CceeEec
Confidence 46677788999999999999988765431 1 11111 1111 34 444443 268899999988 4433322
Q ss_pred ccC-------------------------------CCCeE-EEEEcCCCCeEEEEEeC----CC-----------cEEEEE
Q 002519 715 MGH-------------------------------SASVM-SLDFHPNKDDLICSCDG----DG-----------EIRYWS 747 (913)
Q Consensus 715 ~~h-------------------------------~~~V~-sl~fsp~~~~ll~sgs~----Dg-----------~I~iwd 747 (913)
..- ...++ .+.+.+..+.+++..+. ++ .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 211 01111 24566654444433222 12 688889
Q ss_pred cCCCeeeEEeeCC----------ceEE--EEecCCC---EEEEEEcCCeEEEEECCCCeEE
Q 002519 748 INNGSCTRVFKGG----------TAQM--RFQPHLG---RYLAAAAENVVSILDAETQACR 793 (913)
Q Consensus 748 l~~~~~~~~~~~~----------~~~v--~~s~~~~---~ll~~~~dg~I~i~D~~t~~~~ 793 (913)
+++++.+..|... ...+ .+..+++ .++.+..+|.++++|.++++.+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 9999988776431 1112 2324554 4567778999999999999886
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00028 Score=80.13 Aligned_cols=96 Identities=13% Similarity=0.138 Sum_probs=80.3
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeE-EEEECCCCCEEEEEeCCCeEEEEEcCCCCce
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT-DVRFSPSMPRLATSSFDKTVRVWDADNPGYS 710 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~-~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~ 710 (913)
-.-.|.-+.|+|.-.++|++..+|.|.++.+. ...+.++..|...++ +++|.|||+.||+|-.||+|++.|++++...
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34568889999999999999999999999998 788888988888888 9999999999999999999999999985544
Q ss_pred eEEeccCCCCeEEEEEcC
Q 002519 711 LRTFMGHSASVMSLDFHP 728 (913)
Q Consensus 711 ~~~~~~h~~~V~sl~fsp 728 (913)
..........|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 443334556677777763
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.026 Score=62.68 Aligned_cols=211 Identities=12% Similarity=0.149 Sum_probs=122.9
Q ss_pred cEEEEECCCCceeeEeccC-CCCeEE---EEECCC----CCEEEEEeC----------CCeEEEEEcCCC---CceeE--
Q 002519 656 KAVLWHTDTLKSKTNLEEH-SSLITD---VRFSPS----MPRLATSSF----------DKTVRVWDADNP---GYSLR-- 712 (913)
Q Consensus 656 ~V~vwd~~~~~~~~~l~~h-~~~V~~---l~fspd----g~~Lasgs~----------Dg~V~Iwdl~~~---~~~~~-- 712 (913)
.|+|.|..+.+.+.++.-. ...|++ +.|..+ ..+|++|.. .|.|.++++... ...+.
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5788888887777665432 223443 444433 457777743 289999999873 11222
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEE--eeCCceEEEEecCCCEEEEEEcCCeEEEE--EC
Q 002519 713 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRV--FKGGTAQMRFQPHLGRYLAAAAENVVSIL--DA 787 (913)
Q Consensus 713 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~--~~~~~~~v~~s~~~~~ll~~~~dg~I~i~--D~ 787 (913)
.-....+.|++|+-. ++.++++. ++.|++|++...+ .... +......+.....+++++++.....|.++ +.
T Consensus 83 ~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 223467889998877 34455333 5899999998887 4433 33444555566667899999888877776 44
Q ss_pred CCCeEEEEe-cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-----C---CCceEEEeecCCCceEEE---EEeC
Q 002519 788 ETQACRLSL-QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-----S---EGECVHELSCNGNKFHSC---VFHP 854 (913)
Q Consensus 788 ~t~~~~~~l-~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~-----~---~~~~i~~~~~~~~~i~~l---~~sp 854 (913)
...+....- ......+++++|..+++.++++..+ .|.++..... . ....+..+.. +..|+++ .+.+
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l-g~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL-GDIVNSFRRGSLIP 237 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS-
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC-CCccceEEEEEeee
Confidence 333222221 2245668999998666777777777 8888887531 1 1122333333 4556666 4444
Q ss_pred --CCC------EEEEEEcCCeEEEE
Q 002519 855 --TYP------SLLVIGCYQSLELW 871 (913)
Q Consensus 855 --~g~------~l~s~s~dg~I~iw 871 (913)
.+. .++.++.+|.|.+.
T Consensus 238 ~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 238 RSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCCcccccceEEEEecCCEEEEE
Confidence 122 48888888888743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.077 Score=64.98 Aligned_cols=201 Identities=10% Similarity=0.004 Sum_probs=104.3
Q ss_pred CCeEEEEECCCCCEEEEEeC-C----CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCC-----CcEEE
Q 002519 676 SLITDVRFSPSMPRLATSSF-D----KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRY 745 (913)
Q Consensus 676 ~~V~~l~fspdg~~Lasgs~-D----g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D-----g~I~i 745 (913)
-.+..+.|+||+++|+.+.+ + -.|+|.|+.++......+.+- -..++|.+|++.++++...+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 34777899999998887644 2 358889998733222222221 14599999998888776543 36888
Q ss_pred EEcCCC--eeeEEeeCC---ce-EEEEecCCCEEEEEEc---CCeEEEEECC--CCeEEEEecCCCCCeEEEEEcCCCCE
Q 002519 746 WSINNG--SCTRVFKGG---TA-QMRFQPHLGRYLAAAA---ENVVSILDAE--TQACRLSLQGHTKPIDSVCWDPSGEL 814 (913)
Q Consensus 746 wdl~~~--~~~~~~~~~---~~-~v~~s~~~~~ll~~~~---dg~I~i~D~~--t~~~~~~l~~h~~~V~sl~~spdg~~ 814 (913)
+++.++ +....+... .. .+..+.++..++..+. ++.+.+|+.. ++.....+.........+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 888887 434444431 11 1223336666665544 4578888843 3332222222222222222 333343
Q ss_pred EEEEeCC--eEEEEECCCCCCCceEEEeecC--CCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEEc
Q 002519 815 LASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMTLT 882 (913)
Q Consensus 815 l~s~s~d--~I~vwdl~~~~~~~~i~~~~~~--~~~i~~l~~sp~g~~l~s~s~dg--~I~iwd~~~~~~~~~~ 882 (913)
++....+ ..+|+.+.-... .....+..+ ...+..+.+. .+..+++...++ .|++++..++....+.
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDE-QQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred EEEEcCCCCCceEEEecCCCc-ccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence 3333332 444443322111 111222222 2357777776 233444444455 4556666544444433
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0097 Score=70.98 Aligned_cols=192 Identities=16% Similarity=0.212 Sum_probs=106.5
Q ss_pred CCCCeEEEEECCCCCEEEEEe------CCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEe---------
Q 002519 674 HSSLITDVRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD--------- 738 (913)
Q Consensus 674 h~~~V~~l~fspdg~~Lasgs------~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs--------- 738 (913)
....+.+.+++|||+.++..- .|..-.||-...++.......+. ..+.-.|+|+|+.+.+...
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 334688999999999887765 24443444333223332223332 3778899999775554422
Q ss_pred --CCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEE---EECCCCeEEE----Eec-CCCCCeEEEEE
Q 002519 739 --GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI---LDAETQACRL----SLQ-GHTKPIDSVCW 808 (913)
Q Consensus 739 --~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i---~D~~t~~~~~----~l~-~h~~~V~sl~~ 808 (913)
..+.|.+.+++.+.....+.+.+..+.|++++..+++.. ++.|++ .....+.... .+. +-...+.++.|
T Consensus 426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 223455556655544435567789999999999988876 467776 4444443111 122 22334688999
Q ss_pred cCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 002519 809 DPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 870 (913)
Q Consensus 809 spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~i 870 (913)
..++.+++........+|.+.-.........-......+..++-.++ .|++...++.+.+
T Consensus 505 ~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 505 RTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred ecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 99998664433223334444322111111011111344555655542 4666666664444
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.022 Score=62.31 Aligned_cols=186 Identities=17% Similarity=0.081 Sum_probs=118.3
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEecc-----CCCCeEEEEECCCCCEEEEEeC-----C----C
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-----HSSLITDVRFSPSMPRLATSSF-----D----K 697 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~-----h~~~V~~l~fspdg~~Lasgs~-----D----g 697 (913)
+.+.+.++..-.++..|+++. .-+++++.+++..+..+.. -....+++...|+|.+.++... . .
T Consensus 64 ~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~ 141 (307)
T COG3386 64 SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERP 141 (307)
T ss_pred CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCC
Confidence 334455655555555666553 3467777766655333321 1234667888999887766544 1 1
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC--C----eeeEE-e---eCCceEEEEe
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--G----SCTRV-F---KGGTAQMRFQ 767 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~--~----~~~~~-~---~~~~~~v~~s 767 (913)
.-+||.++..+..++.+..+-..-+.|+|+||++.++++=+..+.|..|++.. + +.... + ++....++..
T Consensus 142 ~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD 221 (307)
T COG3386 142 TGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD 221 (307)
T ss_pred cceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe
Confidence 12466665336667777766677788999999998887777778899888762 1 11111 1 1334457777
Q ss_pred cCCCEEEEEEcCC-eEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeC
Q 002519 768 PHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSE 820 (913)
Q Consensus 768 ~~~~~ll~~~~dg-~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp-dg~~l~s~s~ 820 (913)
.++...+++...| .|.+|+.. ++.+..+......+++++|-- +.+.|++.+.
T Consensus 222 adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 222 ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 7777665555554 99999998 888888887767888888854 4454444443
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0031 Score=70.37 Aligned_cols=134 Identities=13% Similarity=0.124 Sum_probs=92.9
Q ss_pred CEEEE-EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC--------EEEEEeCCeEEEEECCCCCCCceEEEee
Q 002519 771 GRYLA-AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE--------LLASVSEDSVRVWTVGSGSEGECVHELS 841 (913)
Q Consensus 771 ~~ll~-~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~--------~l~s~s~d~I~vwdl~~~~~~~~i~~~~ 841 (913)
+.++. +.....|+-.|++.|+.+.+.+.+.. |.-+.+.|+.+ .|+..+...|.-||.|-.... .+....
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q 423 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQ 423 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeee
Confidence 33433 33456888999999999999887766 77778888654 344444449999999854331 222222
Q ss_pred c----CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-EEEcccCCCeEEEEEeCCCCEEEEEeCCC
Q 002519 842 C----NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT-MTLTAHEGLIAALAVSTETGYVASASHDK 907 (913)
Q Consensus 842 ~----~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~-~~~~~h~~~V~~l~~spdg~~Lasgs~DG 907 (913)
. ....+.|++-..+| +|++|+.+|.|++||-..... ..+++-..+|..|..+.+|++|+..+..-
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ty 493 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTY 493 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccE
Confidence 2 13445666655555 799999999999999733322 26788899999999999999887666443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.032 Score=58.09 Aligned_cols=229 Identities=12% Similarity=0.108 Sum_probs=129.9
Q ss_pred EEEEEecCC-CEEEEEeCCCc-EEEEECCCCceeeEeccCCCC--eEEEEECCCCCEEEEEeCC-----CeEEEEEcCCC
Q 002519 637 ICCHFSSDG-KLLATGGHDKK-AVLWHTDTLKSKTNLEEHSSL--ITDVRFSPSMPRLATSSFD-----KTVRVWDADNP 707 (913)
Q Consensus 637 ~~l~fspdg-~~Lasgs~Dg~-V~vwd~~~~~~~~~l~~h~~~--V~~l~fspdg~~Lasgs~D-----g~V~Iwdl~~~ 707 (913)
..|+|+|.- .-++.+-.-|+ ..|||........++...++. --.=.|++||.+|+..-.| |.|-|||.+..
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 356777743 45555555554 467888776665554332211 1123699999999887543 78999999976
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEeC-----------------CCcEEEEEcCCCeeeEEeeC-------CceE
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-----------------DGEIRYWSINNGSCTRVFKG-------GTAQ 763 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~-----------------Dg~I~iwdl~~~~~~~~~~~-------~~~~ 763 (913)
-..+-.+..|.-.-..+.|.+||+.++++.+. .-.+.+.|..++..+.+..- .+..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 66677888888888889999999877655330 11233344444444433221 1223
Q ss_pred EEEecCCCEEEEEEcCC-----eEEEEECCCCeEEEEecC-------CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECC
Q 002519 764 MRFQPHLGRYLAAAAEN-----VVSILDAETQACRLSLQG-------HTKPIDSVCWDPSGELLASVSED--SVRVWTVG 829 (913)
Q Consensus 764 v~~s~~~~~ll~~~~dg-----~I~i~D~~t~~~~~~l~~-------h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~ 829 (913)
+....++..++.+-..| --.+=-...++.+.-+.. ....|-+|+.+.+..+++..+-. ...+||..
T Consensus 231 ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 231 LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence 44444443333332221 111111122233222221 22457788888766666666544 88999998
Q ss_pred CCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002519 830 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 872 (913)
Q Consensus 830 ~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd 872 (913)
++. .+.+. .-..++-.-+...-|++.+.+|.|.++.
T Consensus 311 tG~---vv~~a----~l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 311 TGA---VVSEA----ALPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CCc---EEecc----cccccccceeccCceEEecCCceEEecc
Confidence 873 33221 1112223344455588888889888884
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.18 Score=60.86 Aligned_cols=270 Identities=14% Similarity=0.136 Sum_probs=152.5
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEEC--CCCceeeEe--ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHT--DTLKSKTNL--EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 709 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~--~~~~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 709 (913)
..|.-..|-.|..+|.++..||.+.-|-+ .++..-..- .-...++.--.|+..++.-+.++.|+-..+|.-+. +
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~--k 661 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG--K 661 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC--c
Confidence 45666667677889999999998876654 444332222 22345666667776666555555576666776653 2
Q ss_pred eeEEeccCCCCeEEE-EEcCC-CCeEEEEEeCCCcEEEEEcCCCee--eEEe--eCCceEEEEecCCCEEEEEEc-----
Q 002519 710 SLRTFMGHSASVMSL-DFHPN-KDDLICSCDGDGEIRYWSINNGSC--TRVF--KGGTAQMRFQPHLGRYLAAAA----- 778 (913)
Q Consensus 710 ~~~~~~~h~~~V~sl-~fsp~-~~~ll~sgs~Dg~I~iwdl~~~~~--~~~~--~~~~~~v~~s~~~~~ll~~~~----- 778 (913)
.+.+-... ..+..+ .|+.+ ....++++. .+.+++.-+..-.. +++. ......+++.+..-.+.+.+.
T Consensus 662 Lv~spls~-kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~ 739 (1096)
T KOG1897|consen 662 LVYSPLSL-KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESS 739 (1096)
T ss_pred EEEeccch-HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccc
Confidence 22211111 111111 12221 222343443 56677776654322 2222 233445666653333333222
Q ss_pred ------C---CeEEEEECCCCeEEEEecCC-C---CCeEEEEEcCC-CCEEEEEeC-----------CeEEEEECCCCCC
Q 002519 779 ------E---NVVSILDAETQACRLSLQGH-T---KPIDSVCWDPS-GELLASVSE-----------DSVRVWTVGSGSE 833 (913)
Q Consensus 779 ------d---g~I~i~D~~t~~~~~~l~~h-~---~~V~sl~~spd-g~~l~s~s~-----------d~I~vwdl~~~~~ 833 (913)
+ ..++++|-.+.+.+...+-. . ..|.++.|..| +.++++|.. +.|.||.+.....
T Consensus 740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred hhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 1 25677787777655543321 1 23555568887 567777652 2677888776555
Q ss_pred CceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 834 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 834 ~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
.+.+.+....+....-+.| +|++ .++-...|++|++.+++.+ ....+...+..+...-.+..|+.|.-=++|.+
T Consensus 820 L~~v~e~~v~Gav~aL~~f--ngkl--lA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 820 LELVAETVVKGAVYALVEF--NGKL--LAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred eeeeeeeeeccceeehhhh--CCeE--EEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 5566655543333322333 3443 3445568999999998666 55578888999999888889998876565544
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.043 Score=62.66 Aligned_cols=118 Identities=10% Similarity=0.082 Sum_probs=81.5
Q ss_pred CCEEEEEEecC----CCEEEEEeCCCcEEEEECC-----CCceeeEec-cCCC--C--eEEEEECCCCCEEEEEeCCCeE
Q 002519 634 SKVICCHFSSD----GKLLATGGHDKKAVLWHTD-----TLKSKTNLE-EHSS--L--ITDVRFSPSMPRLATSSFDKTV 699 (913)
Q Consensus 634 ~~V~~l~fspd----g~~Lasgs~Dg~V~vwd~~-----~~~~~~~l~-~h~~--~--V~~l~fspdg~~Lasgs~Dg~V 699 (913)
..|..+.|.|- ...|++.-..+.|.||-+- ..+.+..-. .... + -..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 46889999884 3345555678899999875 222222111 1111 1 2356799999988877766666
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 751 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~ 751 (913)
.++++......++.-....+.|.|.||..||.+++++.+..=.-+|||-...
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 6778776555555544677889999999999999988887778899986543
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0077 Score=69.59 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=74.5
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce---e--eEe-ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS---K--TNL-EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~---~--~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 705 (913)
-.+.+..+.++++..++|.|+..|.|.|+-+..... + ..+ +.|...|+|++|++|+..|++|...|+|.+-.++
T Consensus 75 ~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 75 ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence 455667778899999999999999999998764211 1 111 2378899999999999999999999999999887
Q ss_pred CC---CceeEEeccCCCCeEEEEEcCCCCeEEEEE
Q 002519 706 NP---GYSLRTFMGHSASVMSLDFHPNKDDLICSC 737 (913)
Q Consensus 706 ~~---~~~~~~~~~h~~~V~sl~fsp~~~~ll~sg 737 (913)
.. ......+......|.-|++.. .++|++.
T Consensus 155 s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVSt 187 (726)
T KOG3621|consen 155 SRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVST 187 (726)
T ss_pred hhhhhccccceeeccCcceEEeeccc--ceehHhh
Confidence 61 112233444567777777663 3455443
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.24 Score=56.27 Aligned_cols=260 Identities=14% Similarity=0.159 Sum_probs=144.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCcee---eEe-ccCCCCeEEEEECC----CCCEEEEEeCCCeEEEEEcCCCC--------
Q 002519 645 GKLLATGGHDKKAVLWHTDTLKSK---TNL-EEHSSLITDVRFSP----SMPRLATSSFDKTVRVWDADNPG-------- 708 (913)
Q Consensus 645 g~~Lasgs~Dg~V~vwd~~~~~~~---~~l-~~h~~~V~~l~fsp----dg~~Lasgs~Dg~V~Iwdl~~~~-------- 708 (913)
...|++|+..|.++||+....... ..+ ..-..+|..|..-. .....++.=.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 368999999999999998543211 111 12346777776532 12223333456778888884211
Q ss_pred ceeEEeccCC--CCeEEEEEcC----CCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC--CceEEEEecCCCEEEEEEcCC
Q 002519 709 YSLRTFMGHS--ASVMSLDFHP----NKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAEN 780 (913)
Q Consensus 709 ~~~~~~~~h~--~~V~sl~fsp----~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~s~~~~~ll~~~~dg 780 (913)
..+.....|. .....+++-| .++.+|++-+.||.+.+|+-+.....+.+.+ -...+.|.+..+.+++++.+.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~ 196 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW 196 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
Confidence 1223333333 2233344433 2357899999999999999887665555554 235688999999999999998
Q ss_pred eEEEEECCC--------------------Ce---EEEEecCCCCCe---EEEEEcCCCCEEEEEeCCeEEEEECCCCCCC
Q 002519 781 VVSILDAET--------------------QA---CRLSLQGHTKPI---DSVCWDPSGELLASVSEDSVRVWTVGSGSEG 834 (913)
Q Consensus 781 ~I~i~D~~t--------------------~~---~~~~l~~h~~~V---~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~ 834 (913)
.|..|.... ++ +-+++.. .+.+ ..+.++.....|++-++.++.+.+-. | ..
T Consensus 197 ~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G-~l 273 (418)
T PF14727_consen 197 TLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G-SL 273 (418)
T ss_pred eEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-eE
Confidence 888885421 00 1111111 1223 33333334446666666666666653 2 33
Q ss_pred ceEEEeecCCCceEEEEEeC----CC---CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEE---EEeCCCCEEEEEe
Q 002519 835 ECVHELSCNGNKFHSCVFHP----TY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAAL---AVSTETGYVASAS 904 (913)
Q Consensus 835 ~~i~~~~~~~~~i~~l~~sp----~g---~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l---~~spdg~~Lasgs 904 (913)
+..+.+.. .+...+.|.- ++ ..+++++.++.+.||.-.+ ++.-........++ .|..-...|++-+
T Consensus 274 ~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls 349 (418)
T PF14727_consen 274 RFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQLPHVPVALSVANFNGLKGLIVSLS 349 (418)
T ss_pred EEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecCCCCCCEEEEecccCCCCceEEEEc
Confidence 33333322 2222222222 22 2489999999999986332 22111111111222 2333345788888
Q ss_pred CCCcEEE
Q 002519 905 HDKFVKL 911 (913)
Q Consensus 905 ~DG~I~I 911 (913)
.||.|.+
T Consensus 350 ~~G~L~v 356 (418)
T PF14727_consen 350 DEGQLSV 356 (418)
T ss_pred CCCcEEE
Confidence 8888865
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.069 Score=59.60 Aligned_cols=219 Identities=11% Similarity=0.100 Sum_probs=106.9
Q ss_pred CCCEEEEEe-CCCcEEEEECCC----CceeeEecc---CC----CCeEEEEECCCCCEEEEEeC------CCeEEEEEcC
Q 002519 644 DGKLLATGG-HDKKAVLWHTDT----LKSKTNLEE---HS----SLITDVRFSPSMPRLATSSF------DKTVRVWDAD 705 (913)
Q Consensus 644 dg~~Lasgs-~Dg~V~vwd~~~----~~~~~~l~~---h~----~~V~~l~fspdg~~Lasgs~------Dg~V~Iwdl~ 705 (913)
+.++|+..+ ..+.|+|+|+.+ -+..++++. +. ..-..+..-|+|+.++++-. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 678999999983 344555543 11 12223444578888887632 2457777776
Q ss_pred CCCceeEEecc---CCCCeEEEEEcCCCCeEEEEEe--------------------CCCcEEEEEcCCCeeeEEeeCC--
Q 002519 706 NPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCD--------------------GDGEIRYWSINNGSCTRVFKGG-- 760 (913)
Q Consensus 706 ~~~~~~~~~~~---h~~~V~sl~fsp~~~~ll~sgs--------------------~Dg~I~iwdl~~~~~~~~~~~~-- 760 (913)
+ -........ ....-+.+-|.|..+.+| |.. ...++.+||+.+.+.+.++.-+
T Consensus 166 t-f~v~g~We~~~~~~~~gYDfw~qpr~nvMi-SSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 T-FEVKGRWEKDRGPQPFGYDFWYQPRHNVMI-SSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T---EEEE--SB-TT------EEEETTTTEEE-E-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred c-ccccceeccCCCCCCCCCCeEEcCCCCEEE-EeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 5 333333332 233456677888765444 532 2467999999999999988754
Q ss_pred ---ceEEEEec--CCCEEEEEEc-CCeEEEE-ECCCC----eEEEEecCC-----------------CCCeEEEEEcCCC
Q 002519 761 ---TAQMRFQP--HLGRYLAAAA-ENVVSIL-DAETQ----ACRLSLQGH-----------------TKPIDSVCWDPSG 812 (913)
Q Consensus 761 ---~~~v~~s~--~~~~ll~~~~-dg~I~i~-D~~t~----~~~~~l~~h-----------------~~~V~sl~~spdg 812 (913)
...++|.. +..+-++++. ...|..| ..+.+ +.+..+... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 23466654 4445444443 4455444 33444 223333211 2347899999999
Q ss_pred CEEEEEeCC--eEEEEECCCCCCCceEEEeecCC----------------CceEEEEEeCCCCEEEEEEc
Q 002519 813 ELLASVSED--SVRVWTVGSGSEGECVHELSCNG----------------NKFHSCVFHPTYPSLLVIGC 864 (913)
Q Consensus 813 ~~l~s~s~d--~I~vwdl~~~~~~~~i~~~~~~~----------------~~i~~l~~sp~g~~l~s~s~ 864 (913)
++|+.++-- .|+.||+......+.+..+...+ +...-+..|-||++|++..+
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 988888765 89999999877777766544321 12356778899999888763
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.29 Score=51.63 Aligned_cols=192 Identities=14% Similarity=0.117 Sum_probs=116.8
Q ss_pred cceeeeEeecCC-CCEEEEEEecCCCEEEEEeCCC--cEEEEECCCCceeeEeccCC-CCeEEEEECCCCCEEEEEeCCC
Q 002519 622 SFKEANSVRAST-SKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDK 697 (913)
Q Consensus 622 ~~~~~~~l~~H~-~~V~~l~fspdg~~Lasgs~Dg--~V~vwd~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg 697 (913)
.++.+.++.... .-.-.+.|..+|.++-+.+.-| .|+.+|+++++......-.. -.--.|+.. +++.....=.++
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~ 110 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCC
Confidence 445555554222 2344677878888888887766 79999999998776544321 112223333 223333344588
Q ss_pred eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC--------CceEEEEecC
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPH 769 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------~~~~v~~s~~ 769 (913)
...+||.++ -+.+..+. ....=+.++. ++..++ ..+....|+++|..+.+..+.+.. ..+.+.|.
T Consensus 111 ~~f~yd~~t-l~~~~~~~-y~~EGWGLt~--dg~~Li-~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-- 183 (264)
T PF05096_consen 111 TGFVYDPNT-LKKIGTFP-YPGEGWGLTS--DGKRLI-MSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-- 183 (264)
T ss_dssp EEEEEETTT-TEEEEEEE--SSS--EEEE--CSSCEE-EE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--
T ss_pred eEEEEcccc-ceEEEEEe-cCCcceEEEc--CCCEEE-EECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--
Confidence 999999987 55666664 3456677773 466666 455577899999988877665532 12334454
Q ss_pred CCEEEEEEc-CCeEEEEECCCCeEEEEecC------------C---CCCeEEEEEcCCCCEEEEEeCC
Q 002519 770 LGRYLAAAA-ENVVSILDAETQACRLSLQG------------H---TKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 770 ~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~------------h---~~~V~sl~~spdg~~l~s~s~d 821 (913)
++.+++-.. ...|...|..+|+++..+.. . .+..+.|+|+|....|+..+..
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 456666554 67899999999998876521 1 3458899999988877666665
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.13 Score=58.44 Aligned_cols=88 Identities=20% Similarity=0.325 Sum_probs=57.6
Q ss_pred EEEEecCCCEEEEEeCCCcEEE---EECC-CC----ceeeEecc---CC--CCeEEEEEC-----------CCCCEEEEE
Q 002519 638 CCHFSSDGKLLATGGHDKKAVL---WHTD-TL----KSKTNLEE---HS--SLITDVRFS-----------PSMPRLATS 693 (913)
Q Consensus 638 ~l~fspdg~~Lasgs~Dg~V~v---wd~~-~~----~~~~~l~~---h~--~~V~~l~fs-----------pdg~~Lasg 693 (913)
+++.+|++++||.+..+..|.+ |+.. .+ .......+ +. ..|+++.|- +|...|++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999987777665 6442 11 11222211 11 467777663 346789999
Q ss_pred eCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEc
Q 002519 694 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 727 (913)
Q Consensus 694 s~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs 727 (913)
..+|.|++|... +..+..-.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte~--G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTEN--GVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEecc--chHHHHHhcCccceEEEEec
Confidence 999999999885 44444444577777777764
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.15 Score=56.87 Aligned_cols=66 Identities=9% Similarity=0.016 Sum_probs=40.8
Q ss_pred CceEEEEEeC-------CCCEEEEEEcCCeEEEEECCCCcEE----EE-cccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002519 845 NKFHSCVFHP-------TYPSLLVIGCYQSLELWNMSENKTM----TL-TAHEGLIAALAVSTETGYVASASHDKFVK 910 (913)
Q Consensus 845 ~~i~~l~~sp-------~g~~l~s~s~dg~I~iwd~~~~~~~----~~-~~h~~~V~~l~~spdg~~Lasgs~DG~I~ 910 (913)
..+..+.|-. .+.+|++.-..+.|...++.....+ .+ ......+..|++.|||.++++...+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3455555543 3344555444568888887755322 22 23455899999999999888888888875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.049 Score=65.07 Aligned_cols=186 Identities=11% Similarity=0.077 Sum_probs=105.1
Q ss_pred CCCCeEEEEEcCCCCeEEEEEe-----CCC--cEEEEEcCCCeeeEEeeC-CceEEEEecCCCEEEEEEcC---------
Q 002519 717 HSASVMSLDFHPNKDDLICSCD-----GDG--EIRYWSINNGSCTRVFKG-GTAQMRFQPHLGRYLAAAAE--------- 779 (913)
Q Consensus 717 h~~~V~sl~fsp~~~~ll~sgs-----~Dg--~I~iwdl~~~~~~~~~~~-~~~~v~~s~~~~~ll~~~~d--------- 779 (913)
....+.+.+++|+++.++++.. .|. .|.+++..... .....+ ....-.|+|+++.+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 3346788999999998877662 233 55555653222 222222 35678899998877766533
Q ss_pred ---CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEE---EECCCCCCCce--EEEeec-CCCceEEE
Q 002519 780 ---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV---WTVGSGSEGEC--VHELSC-NGNKFHSC 850 (913)
Q Consensus 780 ---g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~v---wdl~~~~~~~~--i~~~~~-~~~~i~~l 850 (913)
+.+.+.+++.++... .....|..+.|+|||..|+....+.|.| -....+. ... ...+.. ....+..+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecccCCccccc
Confidence 233333443332222 2345799999999999888777666666 3322221 111 112222 23335788
Q ss_pred EEeCCCCEEEEEEcCC--eEEEEECCCCcEEEEcc--cCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002519 851 VFHPTYPSLLVIGCYQ--SLELWNMSENKTMTLTA--HEGLIAALAVSTETGYVASASHDKFVK 910 (913)
Q Consensus 851 ~~sp~g~~l~s~s~dg--~I~iwd~~~~~~~~~~~--h~~~V~~l~~spdg~~Lasgs~DG~I~ 910 (913)
.|..++.. +++..++ .|+..++.......+.. ....+.+|+-+++ .|+....+|.+.
T Consensus 503 ~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 503 DWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred eEecCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 99999985 4555554 34444555433222233 2566777776663 355555566443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.17 Score=53.43 Aligned_cols=192 Identities=13% Similarity=0.130 Sum_probs=118.7
Q ss_pred eeeEeccC-CCCeEEEEECCCCCEEEEEeCCC--eEEEEEcCCCCceeEEe-ccCCCCeEEEEEcCCCCeEEEEEeCCCc
Q 002519 667 SKTNLEEH-SSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGE 742 (913)
Q Consensus 667 ~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg--~V~Iwdl~~~~~~~~~~-~~h~~~V~sl~fsp~~~~ll~sgs~Dg~ 742 (913)
.+.++... ....-.+.|..++.++-+.+.-| .|+.+|+.+ ++..... ....-.-..|+.. ++.++.-.-.++.
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t-g~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLET-GKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTT-SSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCC-CcEEEEEECCccccceeEEEE--CCEEEEEEecCCe
Confidence 34444422 23345778877787777777755 799999998 4444332 2233333445555 3456666778999
Q ss_pred EEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCC-----CCCeEEEEEcCCCCEEEE
Q 002519 743 IRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH-----TKPIDSVCWDPSGELLAS 817 (913)
Q Consensus 743 I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h-----~~~V~sl~~spdg~~l~s 817 (913)
..+||.++.+.+..+.-....--...++..++.+.....|+++|..+.+.+..+... -..++-+.|. +|.+.|-
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN 190 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN 190 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEE
T ss_pred EEEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEE
Confidence 999999999988887644333223367788888888999999999988776666532 1246667776 5666655
Q ss_pred EeCC-eEEEEECCCCCCCceEEEeec---------------CCCceEEEEEeCCCCEEEEEEcC
Q 002519 818 VSED-SVRVWTVGSGSEGECVHELSC---------------NGNKFHSCVFHPTYPSLLVIGCY 865 (913)
Q Consensus 818 ~s~d-~I~vwdl~~~~~~~~i~~~~~---------------~~~~i~~l~~sp~g~~l~s~s~d 865 (913)
.-.. .|...|..+| .++..+.. ...-.+.|+|.|....|++.+..
T Consensus 191 VW~td~I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 191 VWQTDRIVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp ETTSSEEEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred eCCCCeEEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 5544 8888888777 33333211 13457899999988888777754
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.078 Score=53.81 Aligned_cols=204 Identities=11% Similarity=0.097 Sum_probs=108.2
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcC-CCC-eEEEEEeCCCcEEEEEcCC--CeeeEEe-------
Q 002519 689 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP-NKD-DLICSCDGDGEIRYWSINN--GSCTRVF------- 757 (913)
Q Consensus 689 ~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp-~~~-~ll~sgs~Dg~I~iwdl~~--~~~~~~~------- 757 (913)
++.+-=..|.|.-||+.........+.+.. +.++.+-- ++. .+.+.++..-.|.-||... .+..+++
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 444444456677788876332222333221 22233321 222 3444555555566677432 2233331
Q ss_pred -eCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC--------CCeEEEEEcCCCCEEE-EEeCC-eEEEE
Q 002519 758 -KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT--------KPIDSVCWDPSGELLA-SVSED-SVRVW 826 (913)
Q Consensus 758 -~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~--------~~V~sl~~spdg~~l~-s~s~d-~I~vw 826 (913)
+...+.-..+|++.+ +.+.....-.++....+....-+.+|. .--+.++|+.+.+.++ +-+.+ +|.-|
T Consensus 107 kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred HhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 112334557788777 444332111133333333333333332 2335688988877554 44555 78778
Q ss_pred E--CCCCC--CCceEEEeecC----CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeC
Q 002519 827 T--VGSGS--EGECVHELSCN----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVST 895 (913)
Q Consensus 827 d--l~~~~--~~~~i~~~~~~----~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~sp 895 (913)
| ..++. ..+.+..++.. .-.--.+++..+|..++++-..++|..+|..+++++ ++.-....|+++||--
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 8 44442 22333333321 111223445667888888888889999999999987 5666688899999954
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0065 Score=73.45 Aligned_cols=126 Identities=12% Similarity=0.117 Sum_probs=89.0
Q ss_pred CCeEEEEECCCCeEEEEecCCCCC-eEEEEEcC------CCCEEEEEeCCeEEEEECCCCCCCceEEE-e--ecCCCceE
Q 002519 779 ENVVSILDAETQACRLSLQGHTKP-IDSVCWDP------SGELLASVSEDSVRVWTVGSGSEGECVHE-L--SCNGNKFH 848 (913)
Q Consensus 779 dg~I~i~D~~t~~~~~~l~~h~~~-V~sl~~sp------dg~~l~s~s~d~I~vwdl~~~~~~~~i~~-~--~~~~~~i~ 848 (913)
.+.|+-.|++.|+.+..+..|... |..++-.. ....|+..+.+.+..||.|-.. .+++.. . -.....+.
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~-~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG-NKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC-CceeeccccccccCCCce
Confidence 578999999999999999987654 55554321 2234555555599999998653 223211 1 12345577
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 849 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
|++-+.+| +|++|+.+|.|++||-...+.. .+.+-..+|.+|+.+.||++|++.+..
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 77776666 6999999999999995433322 566778999999999999998776644
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.1 Score=55.03 Aligned_cols=191 Identities=12% Similarity=0.125 Sum_probs=121.7
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccC-CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
+.+-+..|.++.|+|+.+.|++......-.||=..+|..++++.-. -..-..|.|..++.++++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 4555666999999999999999888888888877889988887531 223456777777777777777899998888764
Q ss_pred CceeE---------EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-ee------------EEeeCCceEEE
Q 002519 708 GYSLR---------TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CT------------RVFKGGTAQMR 765 (913)
Q Consensus 708 ~~~~~---------~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~------------~~~~~~~~~v~ 765 (913)
...+. .....+.....++|.|.+..++ .+-+..-+.||.+.... .. ..+-..+..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 32221 1112256678899999988777 55556667777665432 11 01223455677
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCC---------CCeEEEEEcCCCCEEEEEeCC
Q 002519 766 FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 766 ~s~~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h~---------~~V~sl~~spdg~~l~s~s~d 821 (913)
|.+..+.+++-+. ++.+...|.... .+..+.-+. .....|+..++|.+.+++-.+
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence 7777776666665 455555665543 232222111 124567777777755544433
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0013 Score=46.00 Aligned_cols=38 Identities=32% Similarity=0.543 Sum_probs=34.3
Q ss_pred eeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 661 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd 661 (913)
+.+..+..|...|.+++|.+++.++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667788999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.038 Score=66.06 Aligned_cols=217 Identities=9% Similarity=0.071 Sum_probs=106.7
Q ss_pred cEEEEECCCCcee--eEeccCCCCeEEEEECCCCCEEEEEeCC------CeEEEEEcCCCCce-eEEeccCCCCeEEEEE
Q 002519 656 KAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNPGYS-LRTFMGHSASVMSLDF 726 (913)
Q Consensus 656 ~V~vwd~~~~~~~--~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~V~Iwdl~~~~~~-~~~~~~h~~~V~sl~f 726 (913)
.+..||..+.+-. ..+...... .+++. -++..++.|+.+ ..|..||..+.... +..+....... +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE
Confidence 5677887654322 222211111 12222 256677777754 34778888763221 11111111111 2222
Q ss_pred cCCCCeEEEEEeCCC-----cEEEEEcCCCeeeEE--eeCCceEE-EEecCCCEEEEEEcC-------------------
Q 002519 727 HPNKDDLICSCDGDG-----EIRYWSINNGSCTRV--FKGGTAQM-RFQPHLGRYLAAAAE------------------- 779 (913)
Q Consensus 727 sp~~~~ll~sgs~Dg-----~I~iwdl~~~~~~~~--~~~~~~~v-~~s~~~~~ll~~~~d------------------- 779 (913)
. ++.+++.|+.++ .|.+||..+.+.... +....... ....++..+++|+.+
T Consensus 350 ~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 I--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred E--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 2 345666777654 488899887654332 22111111 122344555555543
Q ss_pred ----CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------eEEEEECCCCCCCceEEEeecCCCceE
Q 002519 780 ----NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-------SVRVWTVGSGSEGECVHELSCNGNKFH 848 (913)
Q Consensus 780 ----g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-------~I~vwdl~~~~~~~~i~~~~~~~~~i~ 848 (913)
..|..||.++.+-...-.-........+..-++++.+.|+.+ .+..||..+.+....+..+........
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 247788887764332111111111111222356666666532 367888876223344444433232222
Q ss_pred EEEEeCCCCEEEEEEcCC--eEEEEECCCCcEE
Q 002519 849 SCVFHPTYPSLLVIGCYQ--SLELWNMSENKTM 879 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s~dg--~I~iwd~~~~~~~ 879 (913)
.+++ +++..++|+.++ .+..||..+.+-.
T Consensus 508 ~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 508 TILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred eEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 3333 677888888887 7888888877654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.022 Score=51.59 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=67.7
Q ss_pred EEEEEEec---CC-CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 002519 636 VICCHFSS---DG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 636 V~~l~fsp---dg-~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
|+++++.. || +.|++|+.|..|+||+-+ +.+..+..+ +.|++++-... .+++.+-.+|+|-+|+-.. .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~---Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQ---RL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcc---ee
Confidence 66777655 33 589999999999999854 556666544 45777776655 6799999999999998653 22
Q ss_pred EEeccCCCCeEEEEEcC---CCCeEEEEEeCCCcEE
Q 002519 712 RTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIR 744 (913)
Q Consensus 712 ~~~~~h~~~V~sl~fsp---~~~~ll~sgs~Dg~I~ 744 (913)
...+ .+..++++.+.. +|..-|++|-.+|.|-
T Consensus 75 WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 223366665543 4444556887788764
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0018 Score=45.28 Aligned_cols=39 Identities=36% Similarity=0.537 Sum_probs=34.5
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 002519 665 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 665 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 703 (913)
++.+..+..|...|.++.|.+++..+++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.089 Score=53.40 Aligned_cols=133 Identities=14% Similarity=0.169 Sum_probs=90.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCC---------CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEE
Q 002519 675 SSLITDVRFSPSMPRLATSSFD---------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 745 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~D---------g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~i 745 (913)
....++-..+|+|++++-.-.| |.++.|-... .+..+...-.--+.|+|+.+.+.+.++-+.+-+|.-
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h---~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH---QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC---CceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 3445666778999985433222 4566665532 222233333444568999888888888888889988
Q ss_pred EE--cCCCee-----eEEeeC-------CceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcC
Q 002519 746 WS--INNGSC-----TRVFKG-------GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 810 (913)
Q Consensus 746 wd--l~~~~~-----~~~~~~-------~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp 810 (913)
|| ..++.. +..++. ....+++..++..++++-..++|..+|..+++.+.+++-....|+|+||--
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 88 555432 222221 122355666777888888889999999999999999998899999999974
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.044 Score=49.60 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=66.0
Q ss_pred eEEEEEcC---CCC-EEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002519 803 IDSVCWDP---SGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 877 (913)
Q Consensus 803 V~sl~~sp---dg~-~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~ 877 (913)
|+++++.. +|. .|++|++| .||||+-. ..+.++.. ...+..++-... ..|+.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee
Confidence 55666554 443 88999999 99999853 55666655 455666665555 569999999999999863332
Q ss_pred EEEEcccCCCeEEEEEeC-CC---CEEEEEeCCCcEEE
Q 002519 878 TMTLTAHEGLIAALAVST-ET---GYVASASHDKFVKL 911 (913)
Q Consensus 878 ~~~~~~h~~~V~~l~~sp-dg---~~Lasgs~DG~I~I 911 (913)
- .+ .....+.++++.. ++ .-|++|-.+|.|-+
T Consensus 75 W-Ri-KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 W-RI-KSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred e-ee-ccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2 22 2333366665543 32 25888888998854
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.038 Score=65.96 Aligned_cols=229 Identities=14% Similarity=0.114 Sum_probs=118.6
Q ss_pred cCCCEEEEEeCC------CcEEEEECCCCceeeEecc-CCCCeEEEEECCCCCEEEEEeCC------CeEEEEEcCCCCc
Q 002519 643 SDGKLLATGGHD------KKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNPGY 709 (913)
Q Consensus 643 pdg~~Lasgs~D------g~V~vwd~~~~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~D------g~V~Iwdl~~~~~ 709 (913)
..+.+++.||.+ .+|..||..+..-.....- ....-.++++. ++.+.++|+.| .++..||......
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 345577777766 3677888876532222111 22223334443 45678888888 3577888876432
Q ss_pred eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc-----EEEEEcCCCeeeEEe--eCCceEEEE-ecCCCEEEEEEcC--
Q 002519 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE-----IRYWSINNGSCTRVF--KGGTAQMRF-QPHLGRYLAAAAE-- 779 (913)
Q Consensus 710 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~-----I~iwdl~~~~~~~~~--~~~~~~v~~-s~~~~~ll~~~~d-- 779 (913)
.. +..-...-..+....-++.+.++|+.||. |..||.++.+....- ......... .-++..+++|+.+
T Consensus 362 ~~--~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 362 TP--VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred ec--cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 11 11111111112222224567788888864 778888776543322 222222333 3344455555543
Q ss_pred ----CeEEEEECCCCeEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCCceEEEeecCCCce
Q 002519 780 ----NVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKF 847 (913)
Q Consensus 780 ----g~I~i~D~~t~~~~~~--l~~h~~~V~sl~~spdg~~l~s~s~d------~I~vwdl~~~~~~~~i~~~~~~~~~i 847 (913)
..+..||..+.+.... +..-.... .++.. ++.+.+.|+.+ +|..||..+. ....+.........+
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~-~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-NGKIYVVGGFDGTSALSSVERYDPETN-QWTMVAPMTSPRSAV 516 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccc-eEEEE-CCEEEEECCccCCCccceEEEEcCCCC-ceeEcccCccccccc
Confidence 3678899888754332 22111222 23322 56666666644 4788888764 222222222222222
Q ss_pred EEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEE
Q 002519 848 HSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTM 879 (913)
Q Consensus 848 ~~l~~sp~g~~l~s~s~dg-----~I~iwd~~~~~~~ 879 (913)
.. ..-++...++|+.|+ +|..||..+.+-.
T Consensus 517 g~--~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 517 GV--VVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred cE--EEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 22 223566677777775 7888887776644
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.016 Score=65.02 Aligned_cols=141 Identities=10% Similarity=0.087 Sum_probs=97.3
Q ss_pred CCCEE-EEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCe-------EEEEEeCCCcEEEEEcCCCee--eE
Q 002519 686 SMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD-------LICSCDGDGEIRYWSINNGSC--TR 755 (913)
Q Consensus 686 dg~~L-asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~-------ll~sgs~Dg~I~iwdl~~~~~--~~ 755 (913)
+.++| .++..-..|+-.|++. ++.+..++-+.. |.-+.+.|+.+. -| .|-.|..|+-||.+-... +.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~-GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIER-GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred ccceEeeCCCCcCcceeeeccc-ceeeeEeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCcceee
Confidence 33444 3444456688888887 788888887766 777778776432 22 467789999999884322 11
Q ss_pred E-----eeCCceEEEE-ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 002519 756 V-----FKGGTAQMRF-QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 829 (913)
Q Consensus 756 ~-----~~~~~~~v~~-s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~ 829 (913)
. +.....--|+ ....+++++++.+|.|++||.........+.+...+|..|..+.+|++|++.+...+.+.++.
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred eeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 1 1222221222 234589999999999999998444555567788899999999999999998888876666653
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.041 Score=65.72 Aligned_cols=216 Identities=14% Similarity=0.079 Sum_probs=113.9
Q ss_pred CCEEEEEeCC------CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEcCCCeee
Q 002519 687 MPRLATSSFD------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCT 754 (913)
Q Consensus 687 g~~Lasgs~D------g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D------g~I~iwdl~~~~~~ 754 (913)
+.+++.|+.+ ..|..||..+.......-......-.++++.. +.++++|+.| .++.+||.++.+..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCcee
Confidence 4455666655 35778888764222211112333344555553 4577788888 45788888877644
Q ss_pred EE--eeCCceEEEE-ecCCCEEEEEEcCC-----eEEEEECCCCeEEEEecCCCCCeEEE-EEcCCCCEEEEEeCC----
Q 002519 755 RV--FKGGTAQMRF-QPHLGRYLAAAAEN-----VVSILDAETQACRLSLQGHTKPIDSV-CWDPSGELLASVSED---- 821 (913)
Q Consensus 755 ~~--~~~~~~~v~~-s~~~~~ll~~~~dg-----~I~i~D~~t~~~~~~l~~h~~~V~sl-~~spdg~~l~s~s~d---- 821 (913)
.. +......+.. ..++..+++|+.|| .|..||.++.+....-.-.. ..... ...-+|++.++|+.+
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCcc
Confidence 32 1122222222 33445566677665 68888888764332211111 11111 122257777776643
Q ss_pred ---eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEEEEcccCCCeEEEEE
Q 002519 822 ---SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTLTAHEGLIAALAV 893 (913)
Q Consensus 822 ---~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-----~I~iwd~~~~~~~~~~~h~~~V~~l~~ 893 (913)
++..||..+. ....+..+........ ...-++...++||.|+ +|..||..+.+...+..-......+.+
T Consensus 442 ~l~sve~YDP~t~-~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~ 518 (571)
T KOG4441|consen 442 CLNSVECYDPETN-TWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV 518 (571)
T ss_pred ccceEEEEcCCCC-ceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccE
Confidence 5788888764 1222222222122222 2223566677777665 588899988877655433322222222
Q ss_pred -eCCCCEEEEEeCCCc
Q 002519 894 -STETGYVASASHDKF 908 (913)
Q Consensus 894 -spdg~~Lasgs~DG~ 908 (913)
.-+++..+.|+.||.
T Consensus 519 ~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 519 VVLGGKLYAVGGFDGN 534 (571)
T ss_pred EEECCEEEEEecccCc
Confidence 235567777887764
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.35 Score=51.64 Aligned_cols=184 Identities=14% Similarity=0.113 Sum_probs=100.2
Q ss_pred CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE--eeCCceEEEEecCCCEEEEEEcCCeEEEE-ECCCCeE-EEE
Q 002519 720 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAAENVVSIL-DAETQAC-RLS 795 (913)
Q Consensus 720 ~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~~~~~~~v~~s~~~~~ll~~~~dg~I~i~-D~~t~~~-~~~ 795 (913)
.+.+.++++++..+.+....++.-.+|-...+..... .........|++++...++...+...+++ +...+.. ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 6888999999988776663344444444333332222 22345667789995555555555555555 3333322 122
Q ss_pred ecC--CCCCeEEEEEcCCCCEEEEEe----CCeEEEEECCCCCCC------ceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 002519 796 LQG--HTKPIDSVCWDPSGELLASVS----EDSVRVWTVGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIG 863 (913)
Q Consensus 796 l~~--h~~~V~sl~~spdg~~l~s~s----~d~I~vwdl~~~~~~------~~i~~~~~~~~~i~~l~~sp~g~~l~s~s 863 (913)
+.. ....|..+.++|||..++... ...|.|--+...... ..+.........+..+.|.+++.+++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 221 122899999999999777665 236766665433222 11122223356788999999998777776
Q ss_pred cCCe-EEE-EECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE
Q 002519 864 CYQS-LEL-WNMSENKTMTLTAHEGLIAALAVSTETGYVASA 903 (913)
Q Consensus 864 ~dg~-I~i-wd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 903 (913)
..+. +.. +....+....+..-...+..++...+...++..
T Consensus 185 ~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t 226 (253)
T PF10647_consen 185 SAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVT 226 (253)
T ss_pred CCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEE
Confidence 5542 333 444444333332323333333333333344333
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.71 Score=52.27 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=59.1
Q ss_pred CCEEEEEEecCCCEEEEEe-----------CCC-cEEEEECC--CCc--eeeEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002519 634 SKVICCHFSSDGKLLATGG-----------HDK-KAVLWHTD--TLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDK 697 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs-----------~Dg-~V~vwd~~--~~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 697 (913)
.....|+|.++|+++++.. ..+ .|.+++-. .++ ....+.......+.|+|.+++ |++++.+.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 5678899999999887753 223 67777643 233 234444444556889999888 44445554
Q ss_pred eEEEEEcCCCC----c--ee-EEecc----CCCCeEEEEEcCCCCeEEEEE
Q 002519 698 TVRVWDADNPG----Y--SL-RTFMG----HSASVMSLDFHPNKDDLICSC 737 (913)
Q Consensus 698 ~V~Iwdl~~~~----~--~~-~~~~~----h~~~V~sl~fsp~~~~ll~sg 737 (913)
.+++.|.+..+ . .+ ..+.. +......++|.|||..++..+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 44444554321 1 11 12222 134467899999886555333
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.12 Score=54.12 Aligned_cols=169 Identities=18% Similarity=0.188 Sum_probs=109.3
Q ss_pred cCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEc-CC-eEEEEECCCCeEEEEecCCCC--C
Q 002519 727 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-EN-VVSILDAETQACRLSLQGHTK--P 802 (913)
Q Consensus 727 sp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~-dg-~I~i~D~~t~~~~~~l~~h~~--~ 802 (913)
..|+.+.+++.+.+|.|..- ..+......+.++|....-++... -| ...+||........++...+. .
T Consensus 44 ~~dgs~g~a~~~eaGk~v~~--------~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf 115 (366)
T COG3490 44 ARDGSFGAATLSEAGKIVFA--------TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF 115 (366)
T ss_pred ccCCceeEEEEccCCceeee--------eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee
Confidence 44566666666665554321 112233345667776655444333 33 467788887755544433222 1
Q ss_pred eEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEc------C-----
Q 002519 803 IDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------Y----- 865 (913)
Q Consensus 803 V~sl~~spdg~~l~s~s~d------~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~------d----- 865 (913)
.-.-+|++||.+|+..-.| .|-|||.+. ....+.++..++-.-+.+.|.+||+.++++.. |
T Consensus 116 yGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~--~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~ 193 (366)
T COG3490 116 YGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE--GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTE 193 (366)
T ss_pred ecccccCCCCcEEEeecCCCCCCCceEEEEeccc--ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccc
Confidence 2234799999999987655 589999983 45778888888888999999999999888754 1
Q ss_pred -------CeEEEEECCCCcEE---EEc--ccCCCeEEEEEeCCCCEEEEEeC
Q 002519 866 -------QSLELWNMSENKTM---TLT--AHEGLIAALAVSTETGYVASASH 905 (913)
Q Consensus 866 -------g~I~iwd~~~~~~~---~~~--~h~~~V~~l~~spdg~~Lasgs~ 905 (913)
-++.+.|..++.++ ++. .+.-.|..++..+||..++.|-.
T Consensus 194 lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 194 LNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred cchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 14555666666655 333 35567899999999987776644
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.74 E-value=1.5 Score=49.91 Aligned_cols=222 Identities=11% Similarity=0.144 Sum_probs=119.7
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCce---eEEeccCCCCeEEEEEcC---C-CCeEEEEEeCCCcEEEEEcCCCe-------
Q 002519 687 MPRLATSSFDKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHP---N-KDDLICSCDGDGEIRYWSINNGS------- 752 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~~~---~~~~~~h~~~V~sl~fsp---~-~~~ll~sgs~Dg~I~iwdl~~~~------- 752 (913)
...|++||..|.+|||+....+.. +..-..-..+|..|..-. . ....| +.-.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~L-aVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQL-AVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceE-EEecCCEEEEEEEEecCCCcccCc
Confidence 458999999999999998653311 222233456777776532 2 22233 33446777788773211
Q ss_pred ---eeEE----eeCCceEEEEecCC-----CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002519 753 ---CTRV----FKGGTAQMRFQPHL-----GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 820 (913)
Q Consensus 753 ---~~~~----~~~~~~~v~~s~~~-----~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~ 820 (913)
.... +......+++-+-+ ..+.+=+.||.+.+|+-+.....+.+.+ .---..++|.+.-+.|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 1111 12222334443333 4566667799999999887665555544 112234578888888888888
Q ss_pred C-eEEEEECCC--------------------CCCCceEEEeecCCCceEEE---EEeCCCCEEEEEEcCCeEEEEECCCC
Q 002519 821 D-SVRVWTVGS--------------------GSEGECVHELSCNGNKFHSC---VFHPTYPSLLVIGCYQSLELWNMSEN 876 (913)
Q Consensus 821 d-~I~vwdl~~--------------------~~~~~~i~~~~~~~~~i~~l---~~sp~g~~l~s~s~dg~I~iwd~~~~ 876 (913)
+ .|..|.... ++....-..+.. +..+..+ .++.....|++-+ ...+.+.+.. |
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~-G 271 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN-G 271 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-C
Confidence 7 888887521 111112222222 2223333 3333333344433 4456666653 4
Q ss_pred cEEEEcccCCCeEEEE-E----eCCC---CEEEEEeCCCcEEEeC
Q 002519 877 KTMTLTAHEGLIAALA-V----STET---GYVASASHDKFVKLWK 913 (913)
Q Consensus 877 ~~~~~~~h~~~V~~l~-~----spdg---~~Lasgs~DG~I~IWd 913 (913)
.+......+....|++ | ..++ ..++.+++++.+.||+
T Consensus 272 ~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 272 SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 4443333333333332 1 1122 2488899999999884
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.56 Score=57.70 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=69.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCC--------eEEEEECC----------------CCCEEEEEeCCCeEE
Q 002519 645 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL--------ITDVRFSP----------------SMPRLATSSFDKTVR 700 (913)
Q Consensus 645 g~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~--------V~~l~fsp----------------dg~~Lasgs~Dg~V~ 700 (913)
+..|++++.++.|+-.|..+|+.+-.+...... +..+.+.. ++.+|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457777778888999999998888776543211 22233321 345888899999999
Q ss_pred EEEcCCCCceeEEeccCCCCeE-------------EEEEcC--CCCeEEEEEeC----------CCcEEEEEcCCCeeeE
Q 002519 701 VWDADNPGYSLRTFMGHSASVM-------------SLDFHP--NKDDLICSCDG----------DGEIRYWSINNGSCTR 755 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h~~~V~-------------sl~fsp--~~~~ll~sgs~----------Dg~I~iwdl~~~~~~~ 755 (913)
-.|.++ ++.+..|. ..+.|. .+.-.| .++.+| +|+. +|.|+-+|+++++.+.
T Consensus 274 ALDA~T-Gk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADT-GKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCC-CCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 999988 55444432 111110 011111 123344 4532 6889999999999988
Q ss_pred EeeC
Q 002519 756 VFKG 759 (913)
Q Consensus 756 ~~~~ 759 (913)
.+..
T Consensus 351 ~~~~ 354 (764)
T TIGR03074 351 AWDP 354 (764)
T ss_pred EEec
Confidence 7753
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0017 Score=65.60 Aligned_cols=139 Identities=14% Similarity=0.063 Sum_probs=81.2
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-EEeeCC---c-eE
Q 002519 689 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFKGG---T-AQ 763 (913)
Q Consensus 689 ~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~-~~~~~~---~-~~ 763 (913)
.|...+.||.|+-++++.-....+...-|.....-+.+. . -+++|..+|.|++|+..-.... ..+... + ..
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~---~-~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTAS---A-KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecccC---c-eEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 345556788888888765222222222222221112222 2 3458888999999988732111 111111 1 11
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC-CCeEEEEEcCCCCEEEEE--eCC-eEEEEECCCC
Q 002519 764 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-KPIDSVCWDPSGELLASV--SED-SVRVWTVGSG 831 (913)
Q Consensus 764 v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~-~~V~sl~~spdg~~l~s~--s~d-~I~vwdl~~~ 831 (913)
+....++.+..+++.++.|+.|.+.-.+.+-....|. .++..+..+..+++|++. +.| .++.|++...
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 2222333467778889999999998888777776676 556666666666666666 666 7778877543
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=1.1 Score=47.28 Aligned_cols=252 Identities=12% Similarity=0.039 Sum_probs=136.5
Q ss_pred CCCcccccccCccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC---ceeeEeccCCCCeEEEEECCC
Q 002519 610 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSPS 686 (913)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~---~~~~~l~~h~~~V~~l~fspd 686 (913)
.+.++.|+...-+-.++..+... +--+|+.. .|+++.++..|.-+.+.|+.+. .....+......-..++.+
T Consensus 106 sGL~IvDIS~P~sP~~~~~lnt~-gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS-- 180 (370)
T COG5276 106 SGLRIVDISTPDSPTLIGFLNTD-GYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS-- 180 (370)
T ss_pred CceEEEeccCCCCcceeccccCC-ceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--
Confidence 45566666665455555554431 33444444 5778888886777788888743 3334444455555667775
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEeccCC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC----Cc
Q 002519 687 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GT 761 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~ 761 (913)
|++-+.++.|+-+.|-|+.++..++..-.-.. ..+.++..+++. .++ ...+-.+.+-|..+.+....+.. ..
T Consensus 181 Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr-~y~--vvy~egvlivd~s~~ssp~~~gsyet~~p 257 (370)
T COG5276 181 GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR-AYL--VVYDEGVLIVDVSGPSSPTVFGSYETSNP 257 (370)
T ss_pred cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCe-eEE--EEcccceEEEecCCCCCceEeeccccCCc
Confidence 66778888899999999987655443322222 267777777652 233 33355677888877664444321 11
Q ss_pred eEE-EEecCCCEEEEEEcCCeEEEEECCCCeEEE---EecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceE
Q 002519 762 AQM-RFQPHLGRYLAAAAENVVSILDAETQACRL---SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECV 837 (913)
Q Consensus 762 ~~v-~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~---~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i 837 (913)
.++ .+.-.+++..+...+..+-+.|+.+....+ .+......-..+.. .+.++..+..+...+.|...... .
T Consensus 258 ~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn~g~vV~~s~~s~---m 332 (370)
T COG5276 258 VSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKNTGAVVDASPPSM---M 332 (370)
T ss_pred ccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEeccCCceEEEeCCChhh---c
Confidence 111 234444555555566666666665532111 11111111122222 24455555555555555543211 1
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002519 838 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 838 ~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
....+....+.+|+.+-+...+.....++.+.||+..
T Consensus 333 ~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 333 DKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred ccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 1111222334555555556677778888888888753
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.25 Score=52.18 Aligned_cols=200 Identities=14% Similarity=0.155 Sum_probs=103.7
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEecc-CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002519 671 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 749 (913)
Q Consensus 671 l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~-h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~ 749 (913)
+.+-...|.++.|+|+.+.|++......-.||=.. .+..++++.- .-.....|.|..++. ++++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~-~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTK-EGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEec-CCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEc
Confidence 44555669999999999999888876665555443 3666666541 122234567765543 44455556777766665
Q ss_pred CCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002519 750 NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 828 (913)
Q Consensus 750 ~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl 828 (913)
....+..++.. .| .+............++|+|....|+.+-+. -+.||.+
T Consensus 159 ~~t~~~~~~~~--------------------~i---------~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~ 209 (316)
T COG3204 159 ADTTVISAKVQ--------------------KI---------PLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV 209 (316)
T ss_pred CCccEEeccce--------------------EE---------eccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence 44322211100 00 000111114557788888877766555554 4444444
Q ss_pred CCCCCCceEEEeecC-------CCceEEEEEeCCCCEEEEE-EcCCeEEEEECCCCcEE--EEcccCC-------CeEEE
Q 002519 829 GSGSEGECVHELSCN-------GNKFHSCVFHPTYPSLLVI-GCYQSLELWNMSENKTM--TLTAHEG-------LIAAL 891 (913)
Q Consensus 829 ~~~~~~~~i~~~~~~-------~~~i~~l~~sp~g~~l~s~-s~dg~I~iwd~~~~~~~--~~~~h~~-------~V~~l 891 (913)
........++....+ -..+..+.|++....+++- ..++.|.-.|......- .+.+... .-..|
T Consensus 210 ~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGi 289 (316)
T COG3204 210 TQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGI 289 (316)
T ss_pred ecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCccee
Confidence 322211111111111 1235667787755555444 44566666776655322 2222111 23456
Q ss_pred EEeCCCCEEE
Q 002519 892 AVSTETGYVA 901 (913)
Q Consensus 892 ~~spdg~~La 901 (913)
+...+|.+.+
T Consensus 290 amDd~g~lYI 299 (316)
T COG3204 290 AMDDDGNLYI 299 (316)
T ss_pred EECCCCCEEE
Confidence 7777776443
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=1.7 Score=48.55 Aligned_cols=267 Identities=10% Similarity=0.073 Sum_probs=131.0
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceeeEe----ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNL----EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-~~~~~~~l----~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
...+++|+|..+.+-+|+|. +|.| |... .++.-... ......+.+|.|..+ ..+++ +..+. ||..++.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~--i~~S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSL--LLHTTDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCce--EEEECCC
Confidence 55799999986666677664 4433 3332 22222211 112334778888643 34444 44553 3444443
Q ss_pred CceeEEec---cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----eCCceEEEEecCCCEEEEEEcCC
Q 002519 708 GYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRYLAAAAEN 780 (913)
Q Consensus 708 ~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~s~~~~~ll~~~~dg 780 (913)
++.-..+. ........+..... ..++ .++..|.|..=+ +.++.-..+ .+....+.+.+++ .+++.+..|
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~-~~~~-~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g-~~v~~g~~G 193 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGP-GTAE-MATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDG-KYVAVSSRG 193 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECC-Ccce-eeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCC-eEEEEeCCc
Confidence 43332221 01111222222222 2233 233344443222 122221111 2334566777764 555666666
Q ss_pred eEEEE-ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEe-ecCCCceEEEEEeCCCCE
Q 002519 781 VVSIL-DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPS 858 (913)
Q Consensus 781 ~I~i~-D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~-~~~~~~i~~l~~sp~g~~ 858 (913)
.+..- |.....-......-...++++.+.+++++++++..+.+++=....+.....+..- ......+..+.+.+++.
T Consensus 194 ~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~- 272 (334)
T PRK13684 194 NFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE- 272 (334)
T ss_pred eEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-
Confidence 55432 2221111112223456789999999999887776655432223333322222110 01224577888988776
Q ss_pred EEEEEcCCeEEEEECCCCcEEEE----cccCCCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 859 LLVIGCYQSLELWNMSENKTMTL----TAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 859 l~s~s~dg~I~iwd~~~~~~~~~----~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+++++.+|.|.. ....++.... ..-....+.+.|..+++.++ .+..|.|..|+
T Consensus 273 ~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 273 IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 555666776653 4455554322 12234578888877776655 55678777664
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.61 E-value=2.9 Score=51.09 Aligned_cols=240 Identities=13% Similarity=0.010 Sum_probs=123.4
Q ss_pred CCCEEEEEEecCC----CEEEEEe---CCCcEEEEECCCCc---eeeEeccCCCCeEEEE--ECCCC-CEEEEEeCCCeE
Q 002519 633 TSKVICCHFSSDG----KLLATGG---HDKKAVLWHTDTLK---SKTNLEEHSSLITDVR--FSPSM-PRLATSSFDKTV 699 (913)
Q Consensus 633 ~~~V~~l~fspdg----~~Lasgs---~Dg~V~vwd~~~~~---~~~~l~~h~~~V~~l~--fspdg-~~Lasgs~Dg~V 699 (913)
-++|.+++.-.+. ..++||+ .||+++|..-.-+- ....+.| -..++.++ +.++- .+|+.+- -+.-
T Consensus 353 LgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf-~~eT 430 (1096)
T KOG1897|consen 353 LGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSF-ISET 430 (1096)
T ss_pred ccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEe-ccce
Confidence 4578877765422 3555554 58899998654221 1223444 44577777 44332 2554443 3345
Q ss_pred EEEEcCCCCceeEEeccCCCCeEEEEEcCC-CCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEc
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~ 778 (913)
++..+... .......+.......+..+.- ++.++=.. ...||+++-..........+..+....+.+...+++++.
T Consensus 431 rvl~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT--s~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~ 507 (1096)
T KOG1897|consen 431 RVLNISEE-VEETEDPGFSTDEQTIFCSTINGNQLVQVT--SNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGG 507 (1096)
T ss_pred EEEEEccc-eEEeccccccccCceEEEEccCCceEEEEe--cccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecC
Confidence 56666542 112222222233333333321 22222111 345677765522222223344455555566667777777
Q ss_pred CCeEEEEECCCCeEEEEe-cCCCCCeEEEEEcCCC------CEEEEEeCC--eEEEEECCCCCCCceEEEeec--CCCce
Q 002519 779 ENVVSILDAETQACRLSL-QGHTKPIDSVCWDPSG------ELLASVSED--SVRVWTVGSGSEGECVHELSC--NGNKF 847 (913)
Q Consensus 779 dg~I~i~D~~t~~~~~~l-~~h~~~V~sl~~spdg------~~l~s~s~d--~I~vwdl~~~~~~~~i~~~~~--~~~~i 847 (913)
++.+...++......... ...+..|.|+.++|-| ++++.|..+ .+.+.-+... ...+...+.. -...|
T Consensus 508 ~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~-~~~~~~~l~~~~iPRSI 586 (1096)
T KOG1897|consen 508 GLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL-ILITHEQLSGEIIPRSI 586 (1096)
T ss_pred ccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc-ceeeeeccCCCccchhe
Confidence 788877777766522211 2235678999999742 267777766 3333333221 1111111221 12335
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcE
Q 002519 848 HSCVFHPTYPSLLVIGCYQSLELW--NMSENKT 878 (913)
Q Consensus 848 ~~l~~sp~g~~l~s~s~dg~I~iw--d~~~~~~ 878 (913)
.-..|-.|..+|+++..||.+.-| |..++..
T Consensus 587 l~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 587 LLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred eeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 555666678899999999977655 5555543
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.15 Score=60.96 Aligned_cols=177 Identities=6% Similarity=0.006 Sum_probs=87.2
Q ss_pred CCeEEEEEeCC------CcEEEEEcCCCeeeEE--eeCCc-eEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEEE-
Q 002519 730 KDDLICSCDGD------GEIRYWSINNGSCTRV--FKGGT-AQMRFQPHLGRYLAAAAEN-----VVSILDAETQACRL- 794 (913)
Q Consensus 730 ~~~ll~sgs~D------g~I~iwdl~~~~~~~~--~~~~~-~~v~~s~~~~~ll~~~~dg-----~I~i~D~~t~~~~~- 794 (913)
++.+++.|+.+ ..+..||..+...... +.... .......++..+++|+.++ .+..||..+.+-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 34577677753 3478899887754321 11111 1122333445556666543 58889988764332
Q ss_pred -EecCCCCCeEEEEEcCCCCEEEEEeCC------------------------eEEEEECCCCCCCceEEEeecCCCceEE
Q 002519 795 -SLQGHTKPIDSVCWDPSGELLASVSED------------------------SVRVWTVGSGSEGECVHELSCNGNKFHS 849 (913)
Q Consensus 795 -~l~~h~~~V~sl~~spdg~~l~s~s~d------------------------~I~vwdl~~~~~~~~i~~~~~~~~~i~~ 849 (913)
.+.........++ -+|++.+.|+.+ .+..||..+. ....+..+... ....
T Consensus 383 ~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td-~W~~v~~m~~~--r~~~ 457 (557)
T PHA02713 383 PDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN-IWETLPNFWTG--TIRP 457 (557)
T ss_pred CCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC-eEeecCCCCcc--cccC
Confidence 1211111111222 257766666542 4667777653 11222211111 1111
Q ss_pred EEEeCCCCEEEEEEcC------CeEEEEECCC-CcEEEEcc---cCCCeEEEEEeCCCCEEEEEeCCC--cEEEeC
Q 002519 850 CVFHPTYPSLLVIGCY------QSLELWNMSE-NKTMTLTA---HEGLIAALAVSTETGYVASASHDK--FVKLWK 913 (913)
Q Consensus 850 l~~sp~g~~l~s~s~d------g~I~iwd~~~-~~~~~~~~---h~~~V~~l~~spdg~~Lasgs~DG--~I~IWd 913 (913)
....-+++..++|+.+ ..|..||..+ .+-..+.. .......++ -++++.++||.|| .|..||
T Consensus 458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcC
Confidence 2223355656666654 2478899887 45432222 222222222 3777888999888 444443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.57 E-value=1.4 Score=48.11 Aligned_cols=267 Identities=12% Similarity=0.107 Sum_probs=118.0
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEEC-CCCceeeEec--cC---CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLE--EH---SSLITDVRFSPSMPRLATSSFDKTVRVWDADN 706 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~-~~~~~~~~l~--~h---~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 706 (913)
...+.+|.|..+..-+|+|. .+.| +.. +.|+.-.... .. .-...+|.|..+ ..+++ +..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ll~T~D- 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG-LLLHTTD- 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETT-EEEEESS-
T ss_pred CCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCc-eEEEecC-
Confidence 45799999986666666664 4543 333 3232222211 11 223667888643 34444 4455 3333333
Q ss_pred CCceeEEec---cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-e---eCCceEEEEecCCCEEEEEEcC
Q 002519 707 PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-F---KGGTAQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 707 ~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~-~---~~~~~~v~~s~~~~~ll~~~~d 779 (913)
++..-..+. .-......|....++ ..+++ +..|.|+.= .+.++.-.. . .+....+..++++.+++++...
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~-~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDG-SAELA-GDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETT-EEEEE-ETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEE-cCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 344333321 122333444444433 23323 334443322 222222111 1 2334556667776655555555
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC-CCCCC-ceEEEeecCCCceEEEEEeCCCC
Q 002519 780 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG-SGSEG-ECVHELSCNGNKFHSCVFHPTYP 857 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~-~~~~~-~~i~~~~~~~~~i~~l~~sp~g~ 857 (913)
..+.-||.-...-...-+.....|.++.|.+++.+.+++..+.|++=+.. ..+.. +.+..+......+..++|.+++.
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~ 245 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE 245 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC
Confidence 55567776543222222334578999999999887776643377776621 11000 01111222344588999998876
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEEc----ccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 858 SLLVIGCYQSLELWNMSENKTMTLT----AHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 858 ~l~s~s~dg~I~iwd~~~~~~~~~~----~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
..+ ++..|.| +...+.++.-... .....++.|.|..+.+-+| .+.||.|.-|
T Consensus 246 ~wa-~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 246 IWA-VGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp EEE-EESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred EEE-EeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 555 5555543 3455666655332 2355688888876654444 5578887665
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.16 Score=56.12 Aligned_cols=119 Identities=16% Similarity=0.179 Sum_probs=87.5
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce----eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~----~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 707 (913)
..++|.+|.||+|.+.||+--.|++|.+++....+. ..+.+..+..|...+|+.+ ..+|..+..| |.+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 456999999999999999999999999999843222 2233445566999999866 5666666555 888888776
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCeEEEEEe-CCCcEEEEEcCCCe
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGS 752 (913)
Q Consensus 708 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs-~Dg~I~iwdl~~~~ 752 (913)
...++..+.|+..|....|+++..-++.+.+ ..+++.=+-++++.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 7778888899999999999998776554444 34444445555443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.7 Score=47.43 Aligned_cols=220 Identities=12% Similarity=0.121 Sum_probs=104.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEecc--C---CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002519 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--H---SASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 749 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~--h---~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~ 749 (913)
...+.+|.|..+..-+++|. .+. |+...++++.-..... . .....+|.|.. ...+++| ..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTD 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESS
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecC
Confidence 45789999995555556554 453 4555544433222111 1 22366777764 3344444 344 4444444
Q ss_pred CCeeeEEe------eCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-e
Q 002519 750 NGSCTRVF------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S 822 (913)
Q Consensus 750 ~~~~~~~~------~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~ 822 (913)
.++.-..+ ++....+....+ ...++++..|.|+.=.-.-..-..........+..+..++||++++++..+ .
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~-~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGD-GSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEET-TEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCC-CcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 44432222 222223333333 334444444443332211112223334445778899999999999999988 6
Q ss_pred EEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC-CCCcEEE---Ec--ccCCCeEEEEEeCC
Q 002519 823 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM-SENKTMT---LT--AHEGLIAALAVSTE 896 (913)
Q Consensus 823 I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~-~~~~~~~---~~--~h~~~V~~l~~spd 896 (913)
+.-||-... .-..........|..+.|.+++...+ ....|.|++=+. ...+... .. ...-.+.+++|.++
T Consensus 168 ~~s~~~G~~---~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 168 YSSWDPGQT---TWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp EEEE-TT-S---S-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred EEEecCCCc---cceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 677875321 11222222467899999999987555 458888888872 2222221 11 12334899999999
Q ss_pred CCEEEEEeCC
Q 002519 897 TGYVASASHD 906 (913)
Q Consensus 897 g~~Lasgs~D 906 (913)
+...++|+..
T Consensus 244 ~~~wa~gg~G 253 (302)
T PF14870_consen 244 NEIWAVGGSG 253 (302)
T ss_dssp S-EEEEESTT
T ss_pred CCEEEEeCCc
Confidence 8877766544
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.038 Score=66.85 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=71.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeE
Q 002519 644 DGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM 722 (913)
Q Consensus 644 dg~~Lasgs~Dg~V~vwd~~~~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~ 722 (913)
-+..++.|+..|.|-..|+... .....=+.-.++|++++|+.+|++++.|-.+|.|.+||+.. ++.++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence 3557888888888888887642 22222233467899999999999999999999999999998 667777776666655
Q ss_pred EEEE---cCCCCeEEEEEeCCCcEEEEEc
Q 002519 723 SLDF---HPNKDDLICSCDGDGEIRYWSI 748 (913)
Q Consensus 723 sl~f---sp~~~~ll~sgs~Dg~I~iwdl 748 (913)
++-+ ..++. .+++++..|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 5443 33333 4557766665 5554
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=96.41 E-value=1.1 Score=55.69 Aligned_cols=178 Identities=13% Similarity=0.185 Sum_probs=101.1
Q ss_pred cCCCCeEEEEEC---C--C-CCEEEEEeCCCeEEEEE------cCCCC--------ceeEEec---cCCCCeEEEEEcCC
Q 002519 673 EHSSLITDVRFS---P--S-MPRLATSSFDKTVRVWD------ADNPG--------YSLRTFM---GHSASVMSLDFHPN 729 (913)
Q Consensus 673 ~h~~~V~~l~fs---p--d-g~~Lasgs~Dg~V~Iwd------l~~~~--------~~~~~~~---~h~~~V~sl~fsp~ 729 (913)
....+|..|+|. . + ...++..-....+.|+. +.... .++..+. .......+++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456788888887 2 1 11233444455566666 11100 1222222 12346778999998
Q ss_pred CCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEc
Q 002519 730 KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 809 (913)
Q Consensus 730 ~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~s 809 (913)
...-||..+..|...|||+......+ .. ...+.....|.| ++|.... +....|+|.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~---~~----------~~~~~~~~~gsi-~~d~~e~----------s~w~rI~W~ 212 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRK---SS----------NLRLSRNISGSI-IFDPEEL----------SNWKRILWV 212 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccC---Cc----------ceeeccCCCccc-cCCCccc----------CcceeeEec
Confidence 87788899999999999992221110 00 111111122333 3333211 445678999
Q ss_pred CCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002519 810 PSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 810 pdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 875 (913)
.+...|++++...+.++|+.+......+. .......|..+.-++.....+..-....|..+++..
T Consensus 213 ~~~~~lLv~~r~~l~~~d~~~~~~~~~l~-~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 213 SDSNRLLVCNRSKLMLIDFESNWQTEYLV-TAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred CCCCEEEEEcCCceEEEECCCCCccchhc-cCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 98889999998899999998764433221 122345677777777632222222335666667666
|
These proteins are found in fungi. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.38 E-value=1.5 Score=46.01 Aligned_cols=235 Identities=13% Similarity=0.046 Sum_probs=143.1
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 714 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~ 714 (913)
.-+.|+-.+||..-+++...+.|--.|-.+++....--+....-..|..-||+..-++-+.. -|.-.|-++.. +..|
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e--vt~f 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE--VTRF 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc--eEEe
Confidence 45678888999999998888888888988998887777777777888889998877765444 35555554422 2222
Q ss_pred c----cCCCCeEEEEEcCCCCeEEEEEeC---------CCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCe
Q 002519 715 M----GHSASVMSLDFHPNKDDLICSCDG---------DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 781 (913)
Q Consensus 715 ~----~h~~~V~sl~fsp~~~~ll~sgs~---------Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~ 781 (913)
. .-........|.+.|...| ++.. .+.|++|+...+ .....+|..|++...++.-.++.
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWF-t~q~G~yGrLdPa~~~i~vfpaPqG-------~gpyGi~atpdGsvwyaslagna 211 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWF-TGQIGAYGRLDPARNVISVFPAPQG-------GGPYGICATPDGSVWYASLAGNA 211 (353)
T ss_pred ecccccCCCcccceeeCCCccEEE-eeccccceecCcccCceeeeccCCC-------CCCcceEECCCCcEEEEeccccc
Confidence 2 2345677788998876444 6542 133444444322 24567899999988888888888
Q ss_pred EEEEECCCCeEEE-Ee-cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCE
Q 002519 782 VSILDAETQACRL-SL-QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 858 (913)
Q Consensus 782 I~i~D~~t~~~~~-~l-~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~ 858 (913)
|...|..++.... .. .........+--+|-|+.-++.... .+..||-.... -....+.+....-.++.+...++.
T Consensus 212 iaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grV 289 (353)
T COG4257 212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRV 289 (353)
T ss_pred eEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcE
Confidence 8888887762211 11 1112334455556677766665444 66666654321 112223333333444555555554
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEc
Q 002519 859 LLVIGCYQSLELWNMSENKTMTLT 882 (913)
Q Consensus 859 l~s~s~dg~I~iwd~~~~~~~~~~ 882 (913)
.++-...+.|.-||-++.....+.
T Consensus 290 W~sea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 290 WLSEADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred EeeccccCceeecCcccceEEEec
Confidence 444444556666666655544443
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.015 Score=66.50 Aligned_cols=79 Identities=22% Similarity=0.253 Sum_probs=66.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeE-EEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002519 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSC 753 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~-sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~ 753 (913)
.-.|.-+.|+|.-.+||++..+|.|.++.+. ...+.++.-|...++ +++|.|||+ +|+.|-.||+|++.|++++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence 3457889999999999999999999998887 445666665666677 999999966 777999999999999999877
Q ss_pred eEE
Q 002519 754 TRV 756 (913)
Q Consensus 754 ~~~ 756 (913)
+..
T Consensus 97 l~~ 99 (665)
T KOG4640|consen 97 LVS 99 (665)
T ss_pred eec
Confidence 665
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.21 Score=56.71 Aligned_cols=42 Identities=10% Similarity=0.042 Sum_probs=33.3
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC
Q 002519 761 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP 802 (913)
Q Consensus 761 ~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~ 802 (913)
...++.+|.+...+++..-|+|.++|+.++..++.+++..+.
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA 351 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA 351 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc
Confidence 345788999776666666689999999999988888876654
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=2.7 Score=47.62 Aligned_cols=149 Identities=14% Similarity=0.125 Sum_probs=86.0
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeEeccC--CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCC-C
Q 002519 643 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-A 719 (913)
Q Consensus 643 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~-~ 719 (913)
-|| .++++..+|.|.-.|.++++.+-....- ...+.+-.+..+|+ |+.++.+|.++.+|.++ +..+..+.... .
T Consensus 67 ~dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~-G~~~W~~~~~~~~ 143 (370)
T COG1520 67 GDG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDAST-GTLVWSRNVGGSP 143 (370)
T ss_pred eCC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCC-CcEEEEEecCCCe
Confidence 344 4444577888888888887765433222 12233333333554 88888899888888875 55555554443 1
Q ss_pred CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCce-E--EE--EecCCCEEEEEEc--CCeEEEEECCCCeE
Q 002519 720 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA-Q--MR--FQPHLGRYLAAAA--ENVVSILDAETQAC 792 (913)
Q Consensus 720 ~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~-~--v~--~s~~~~~ll~~~~--dg~I~i~D~~t~~~ 792 (913)
.+..-....++ .++.++.++.+...|..+++.+..+..... . +. .....+.++++.. ++.+.-+|.+++..
T Consensus 144 ~~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 144 YYASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred EEecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcE
Confidence 12222222222 343454789999999998888766544321 1 11 1123355555555 56788888888877
Q ss_pred EEEe
Q 002519 793 RLSL 796 (913)
Q Consensus 793 ~~~l 796 (913)
+...
T Consensus 222 ~w~~ 225 (370)
T COG1520 222 KWSQ 225 (370)
T ss_pred eeee
Confidence 7664
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.86 Score=47.68 Aligned_cols=210 Identities=15% Similarity=0.099 Sum_probs=124.3
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-
Q 002519 678 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV- 756 (913)
Q Consensus 678 V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~- 756 (913)
-..|+-.+||..-+++...+.|--.|-.+ ++....-.+....-..|..-||+...|+-+ ..-|.-+|-++.+..+.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~t-Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~--~~aI~R~dpkt~evt~f~ 140 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPAT-GEVETYPLGSGASPHGIVVGPDGSAWITDT--GLAIGRLDPKTLEVTRFP 140 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCC-CceEEEecCCCCCCceEEECCCCCeeEecC--cceeEEecCcccceEEee
Confidence 45677788888888888888887778777 444444445555666788888887666222 22566677766554332
Q ss_pred e-----eCCceEEEEecCCCEEEEEEc---------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-
Q 002519 757 F-----KGGTAQMRFQPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED- 821 (913)
Q Consensus 757 ~-----~~~~~~v~~s~~~~~ll~~~~---------dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d- 821 (913)
+ ........|.+++...+++.. .+.|++|+.-. ...-+.||..|+|.+.++.-.+
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyGi~atpdGsvwyaslagn 210 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYGICATPDGSVWYASLAGN 210 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC----------CCCCcceEECCCCcEEEEecccc
Confidence 1 123456778888777776543 13444444432 2345678999999977776555
Q ss_pred eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCE
Q 002519 822 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGY 899 (913)
Q Consensus 822 ~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~ 899 (913)
.|-..|..++. .+.+..-.........+-.+|-++..++....+.+..||-....-. .+.+....-.++.+...++.
T Consensus 211 aiaridp~~~~-aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grV 289 (353)
T COG4257 211 AIARIDPFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRV 289 (353)
T ss_pred ceEEcccccCC-cceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcE
Confidence 67666765542 1222221221233445555677777777667778888876654433 33344444444444444443
Q ss_pred EE
Q 002519 900 VA 901 (913)
Q Consensus 900 La 901 (913)
..
T Consensus 290 W~ 291 (353)
T COG4257 290 WL 291 (353)
T ss_pred Ee
Confidence 33
|
|
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0084 Score=41.96 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhcCCCC
Q 002519 9 DKMLDVYIHDYLVKRDLKASAQAFQAEGKVS 39 (913)
Q Consensus 9 ~~~l~~yiydyl~~~~~~~~a~a~~~e~~~~ 39 (913)
++.|+..|++||.+.|+.++|++|..|..+.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999999997654
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.05 E-value=2.2 Score=47.78 Aligned_cols=186 Identities=17% Similarity=0.185 Sum_probs=110.8
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEEC----CCCCE--EEEEeC-C---CeEEEEEcCCCCceeE
Q 002519 643 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS----PSMPR--LATSSF-D---KTVRVWDADNPGYSLR 712 (913)
Q Consensus 643 pdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fs----pdg~~--Lasgs~-D---g~V~Iwdl~~~~~~~~ 712 (913)
|...+|+....++-+.+||++- +.+..+.. +.++.|... -+++. |+.++. + .+|+||.++.....+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCC-cEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 4455777778888999999864 55555542 334444332 13332 444443 2 4799998874333343
Q ss_pred Eecc-------CCCCeEEEEEc--C-CCCeEEEEEeCCCcEEEEEcC---CC----eeeEEeeC--CceEEEEecCCCEE
Q 002519 713 TFMG-------HSASVMSLDFH--P-NKDDLICSCDGDGEIRYWSIN---NG----SCTRVFKG--GTAQMRFQPHLGRY 773 (913)
Q Consensus 713 ~~~~-------h~~~V~sl~fs--p-~~~~ll~sgs~Dg~I~iwdl~---~~----~~~~~~~~--~~~~v~~s~~~~~l 773 (913)
.+.. ....++.+|+. + ++..+++....+|.+..|.+. .+ +.++.|.. .+..+......+.+
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 3321 12347778874 3 456677788889999888775 22 35666654 44567777888899
Q ss_pred EEEEcCCeEEEEECCC-----CeEEEEecC--CCCCeEEEEEc--CCCC-EEEEEeCC--eEEEEECCCC
Q 002519 774 LAAAAENVVSILDAET-----QACRLSLQG--HTKPIDSVCWD--PSGE-LLASVSED--SVRVWTVGSG 831 (913)
Q Consensus 774 l~~~~dg~I~i~D~~t-----~~~~~~l~~--h~~~V~sl~~s--pdg~-~l~s~s~d--~I~vwdl~~~ 831 (913)
+++-.+.-|.-|+.+- +..+....+ ....|..|++- .+++ ||++.+.+ +..||+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999998898898762 223333322 34568888775 3454 77776665 8999998754
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.78 Score=56.48 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=45.1
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeEEeeCCce---------------EEEEec--CCCEEEEEEc----------CCeEEEE
Q 002519 733 LICSCDGDGEIRYWSINNGSCTRVFKGGTA---------------QMRFQP--HLGRYLAAAA----------ENVVSIL 785 (913)
Q Consensus 733 ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---------------~v~~s~--~~~~ll~~~~----------dg~I~i~ 785 (913)
.|+.++.|+.|.-.|.++++.+..|..... .+.-.| .++.+++++. +|.|+-|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 344777899999999999998876632110 001111 2356666643 5789999
Q ss_pred ECCCCeEEEEecC
Q 002519 786 DAETQACRLSLQG 798 (913)
Q Consensus 786 D~~t~~~~~~l~~ 798 (913)
|.++++.+..+..
T Consensus 342 Da~TGkl~W~~~~ 354 (764)
T TIGR03074 342 DVNTGALVWAWDP 354 (764)
T ss_pred ECCCCcEeeEEec
Confidence 9999999988763
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.27 Score=56.43 Aligned_cols=171 Identities=13% Similarity=0.216 Sum_probs=103.2
Q ss_pred CCeEEEEEcCCCCeEEEEEe--CCCcEEEEEcCCCeeeEEeeCCceEEEEecCC----CEEEEEEcCCeEEEEECC----
Q 002519 719 ASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL----GRYLAAAAENVVSILDAE---- 788 (913)
Q Consensus 719 ~~V~sl~fsp~~~~ll~sgs--~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~----~~ll~~~~dg~I~i~D~~---- 788 (913)
.+|..|+|. ||+.++.+.- .+|.+++=|- +.+..| .++..+.|.|-+ ..+++.-....|.||-+-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF-EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~ 94 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF-EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT 94 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc-ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc
Confidence 467788886 5666665542 2444444332 223333 356677887763 468888888899999664
Q ss_pred -CCeEEEEecCCC-C--C--eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEE
Q 002519 789 -TQACRLSLQGHT-K--P--IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 861 (913)
Q Consensus 789 -t~~~~~~l~~h~-~--~--V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s 861 (913)
..+.+..-..+- . + -..+.|+|...+|++-... .-.+++++.... .....+ ...+.|+|.+|..||.+|++
T Consensus 95 e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 95 ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred ccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCEEEE
Confidence 233333222211 1 1 2357899999988876666 445666655432 222223 44778999999999998887
Q ss_pred EEcCC-eEEEEECCCCcEE-----EEcccCCCeEEEEEeCC
Q 002519 862 IGCYQ-SLELWNMSENKTM-----TLTAHEGLIAALAVSTE 896 (913)
Q Consensus 862 ~s~dg-~I~iwd~~~~~~~-----~~~~h~~~V~~l~~spd 896 (913)
+-... .-+|||-...... .+..-++.|.++.-.-|
T Consensus 173 AvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d 213 (671)
T PF15390_consen 173 AVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD 213 (671)
T ss_pred EeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc
Confidence 76554 7788986554322 34445566666654443
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=95.85 E-value=3.7 Score=45.07 Aligned_cols=229 Identities=13% Similarity=0.033 Sum_probs=109.4
Q ss_pred CCCEEEEEeCCCcEEEEECCC--CceeeEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEEcCCCCc-----------
Q 002519 644 DGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGY----------- 709 (913)
Q Consensus 644 dg~~Lasgs~Dg~V~vwd~~~--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~Iwdl~~~~~----------- 709 (913)
++++|+.|+.+|...+. +.. .+..+.+ +...|+++...+..+.|++-+. ...++++++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 44689999988855544 554 2333333 4568999999988877766653 34499999843110
Q ss_pred ---eeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC----eeeEEe---e---CCceEEEE-ecC--CCEE
Q 002519 710 ---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVF---K---GGTAQMRF-QPH--LGRY 773 (913)
Q Consensus 710 ---~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~---~---~~~~~v~~-s~~--~~~l 773 (913)
......++.....-+++......+++++.....|.++..... ...+.+ . .......+ +.. ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 011122344433334443322223334445666776644322 112211 0 11111222 222 3456
Q ss_pred EEEEcCCeEEEEECCC--Ce---E--EEEecCCC-CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCC
Q 002519 774 LAAAAENVVSILDAET--QA---C--RLSLQGHT-KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGN 845 (913)
Q Consensus 774 l~~~~dg~I~i~D~~t--~~---~--~~~l~~h~-~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~ 845 (913)
++|+..+...++++.. .. . -....... .++ ++...+++.+|+ +-++...+.|.... .......+.- ..
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~-~i~~l~~~e~Ll-c~~~~~v~Vn~~G~-~~~r~~~l~w-~~ 244 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPI-SVVQVPRDEFLL-CYDEFGVFVNLYGK-RRSRNPILHW-EF 244 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCce-EEEEECCCeEEE-EECcEEEEEeCCCC-ccccceEEEc-CC
Confidence 6665543344444422 10 0 00011111 233 333344454444 44444444454321 1111112222 33
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc
Q 002519 846 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT 882 (913)
Q Consensus 846 ~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~ 882 (913)
...++++.. .+|++-. ++.|.|+++.+++.+...
T Consensus 245 ~p~~~~~~~--pyll~~~-~~~ievr~l~~~~l~q~i 278 (302)
T smart00036 245 MPESFAYHS--PYLLAFH-DNGIEIRSIKTGELLQEL 278 (302)
T ss_pred cccEEEEEC--CEEEEEc-CCcEEEEECCCCceEEEE
Confidence 455666663 5666665 556999999999877433
|
Unpublished observations. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.85 E-value=3.3 Score=44.40 Aligned_cols=197 Identities=16% Similarity=0.142 Sum_probs=112.7
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECC-------CCceeeEecc-----CCCCeEEEEECCCCC------------EE
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNLEE-----HSSLITDVRFSPSMP------------RL 690 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-------~~~~~~~l~~-----h~~~V~~l~fspdg~------------~L 690 (913)
.-+.|+|+|.+.+-++....++..+||.. ....+.++.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999999888888888999999986 1123344442 234678888875322 36
Q ss_pred EEEeCCCeEEEEEcCCCCc----eeEEec-cCCCCe-EEEEEcC--CCCeEEEEEeCCCcEEEEEcCCCeee--EEeeCC
Q 002519 691 ATSSFDKTVRVWDADNPGY----SLRTFM-GHSASV-MSLDFHP--NKDDLICSCDGDGEIRYWSINNGSCT--RVFKGG 760 (913)
Q Consensus 691 asgs~Dg~V~Iwdl~~~~~----~~~~~~-~h~~~V-~sl~fsp--~~~~ll~sgs~Dg~I~iwdl~~~~~~--~~~~~~ 760 (913)
+.+++||+|.-|.-.-... .+..+. .....| ..+++.. .+..|.++--..++|.+||-.-.+.. ..|...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 8889999999998532111 112222 112233 3455543 34556655556899999985533221 111111
Q ss_pred ceEEEE-----ecCCCEE--------------EEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcC------CCC
Q 002519 761 TAQMRF-----QPHLGRY--------------LAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDP------SGE 813 (913)
Q Consensus 761 ~~~v~~-----s~~~~~l--------------l~~~~dg~I~i~D~~t~~~~~~l~--~h~~~V~sl~~sp------dg~ 813 (913)
....-| -.-++.+ +.+..-|.|.+||..- ..+.++. +.-..-+.|+..| .|.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 100011 1111222 2233346889998864 4444442 2333455677655 466
Q ss_pred EEEEEeCC-eEEEEECCCCC
Q 002519 814 LLASVSED-SVRVWTVGSGS 832 (913)
Q Consensus 814 ~l~s~s~d-~I~vwdl~~~~ 832 (913)
+|+.--.| +|.+||..++.
T Consensus 263 lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred eEEeecCCceeEEecCCCCc
Confidence 77766566 99999998773
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.32 Score=58.16 Aligned_cols=152 Identities=9% Similarity=0.023 Sum_probs=74.0
Q ss_pred CCeEEEEEeCC-----CcEEEEEcCCCeeeEE--eeCCc-eEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEEE
Q 002519 730 KDDLICSCDGD-----GEIRYWSINNGSCTRV--FKGGT-AQMRFQPHLGRYLAAAAE------NVVSILDAETQACRLS 795 (913)
Q Consensus 730 ~~~ll~sgs~D-----g~I~iwdl~~~~~~~~--~~~~~-~~v~~s~~~~~ll~~~~d------g~I~i~D~~t~~~~~~ 795 (913)
++.+++.|+.+ ..+.+||..+.+.... +.... .......++..++.|+.+ +.+..||..+.+-...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 34566677765 3477888877654322 11111 111222344455555531 4688899887643321
Q ss_pred ecCCCC-CeEEEEEcCCCCEEEEEeCC---------eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 002519 796 LQGHTK-PIDSVCWDPSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 865 (913)
Q Consensus 796 l~~h~~-~V~sl~~spdg~~l~s~s~d---------~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~d 865 (913)
-..... .-.+++ ..++++++.|+.+ .+.+||..+.. ...+..+.........+.+ +++.+++|+.+
T Consensus 422 ~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~ 497 (534)
T PHA03098 422 SPLPISHYGGCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK-WTELSSLNFPRINASLCIF--NNKIYVVGGDK 497 (534)
T ss_pred CCCCccccCceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCc-eeeCCCCCcccccceEEEE--CCEEEEEcCCc
Confidence 111111 111222 2356666666532 37888887542 1222111111111222222 56666666654
Q ss_pred -----CeEEEEECCCCcEEEEcccC
Q 002519 866 -----QSLELWNMSENKTMTLTAHE 885 (913)
Q Consensus 866 -----g~I~iwd~~~~~~~~~~~h~ 885 (913)
+.|.+||..+..-..+....
T Consensus 498 ~~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 498 YEYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred CCcccceeEEEeCCCCEEEecCCCc
Confidence 47889998887655444433
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.82 E-value=4.4 Score=45.73 Aligned_cols=218 Identities=11% Similarity=0.040 Sum_probs=102.1
Q ss_pred CCCEEEEEe-CCCeEEEEEcCCCCc---eeEEecc---CC----CCeEEEEEcCCCCeEEEEE--e----CCCcEEEEEc
Q 002519 686 SMPRLATSS-FDKTVRVWDADNPGY---SLRTFMG---HS----ASVMSLDFHPNKDDLICSC--D----GDGEIRYWSI 748 (913)
Q Consensus 686 dg~~Lasgs-~Dg~V~Iwdl~~~~~---~~~~~~~---h~----~~V~sl~fsp~~~~ll~sg--s----~Dg~I~iwdl 748 (913)
+.++|+..+ ..+.|+|.|+.+.-. ..+++.. +. ..-..+...|+|+.+| ++ + .-|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imI-S~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMI-SALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEE-EEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEE-EeccCCCCCCCCcEEEEcC
Confidence 456777777 578899999985322 2233321 10 1222344456766444 43 2 2356888998
Q ss_pred CCCeeeEEeeCCc------eEEEEecCCCEEEEEEc--------------------CCeEEEEECCCCeEEEEecCCCC-
Q 002519 749 NNGSCTRVFKGGT------AQMRFQPHLGRYLAAAA--------------------ENVVSILDAETQACRLSLQGHTK- 801 (913)
Q Consensus 749 ~~~~~~~~~~~~~------~~v~~s~~~~~ll~~~~--------------------dg~I~i~D~~t~~~~~~l~~h~~- 801 (913)
++.+.+...+... ..+-|.|..+.++++.. ..++.+||..+.+.+.++.--..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 8877777665422 34667777777776542 34899999999999988875432
Q ss_pred -CeEEEEEcCC--CCEEEEEe-CC-eEEEEECCCCCCCc--eEEEeecC-----------------CCceEEEEEeCCCC
Q 002519 802 -PIDSVCWDPS--GELLASVS-ED-SVRVWTVGSGSEGE--CVHELSCN-----------------GNKFHSCVFHPTYP 857 (913)
Q Consensus 802 -~V~sl~~spd--g~~l~s~s-~d-~I~vwdl~~~~~~~--~i~~~~~~-----------------~~~i~~l~~sp~g~ 857 (913)
....|.|..+ ..+-++++ -. +|..|--....... .+..+... ..-|+.|.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 3556777553 44433333 33 55444432222221 11111110 23478899999999
Q ss_pred EEEEEEc-CCeEEEEECCCCcEEEE-----cc---------------cCCCeEEEEEeCCCCEEEEEe
Q 002519 858 SLLVIGC-YQSLELWNMSENKTMTL-----TA---------------HEGLIAALAVSTETGYVASAS 904 (913)
Q Consensus 858 ~l~s~s~-dg~I~iwd~~~~~~~~~-----~~---------------h~~~V~~l~~spdg~~Lasgs 904 (913)
+|++++. .|.|+.||+.....-.+ .+ -.+...-|..|-||++|...+
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9998886 58999999986432211 11 112335678888998876654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.0042 Score=73.09 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=75.5
Q ss_pred EeecCCCCEEEEEEec-CCCEEEEEeCCCcEEEEECC--CCceeeE-----eccCCCCeEEEEECC---CCCEEEEEeCC
Q 002519 628 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD--TLKSKTN-----LEEHSSLITDVRFSP---SMPRLATSSFD 696 (913)
Q Consensus 628 ~l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~V~vwd~~--~~~~~~~-----l~~h~~~V~~l~fsp---dg~~Lasgs~D 696 (913)
.+++..+.|-.+.|-. +...++ -.-|.+.|||++ .|+.... .......+.-|.|.| +..++.++-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 4567788898888854 222222 233678899987 4443322 222334445556654 55677777788
Q ss_pred CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002519 697 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 751 (913)
Q Consensus 697 g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~ 751 (913)
++|++..+++. ....+.+|...+..++|...|-..|..-+-||++..|-+..|
T Consensus 205 ~~i~lL~~~ra--~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 205 GEIRLLNINRA--LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred CceeEeeechH--HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 99999887652 235566799999888887766555555556666666655443
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.023 Score=57.63 Aligned_cols=134 Identities=13% Similarity=0.052 Sum_probs=76.5
Q ss_pred EEEeCCCcEEEEECCCCceee-EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEc
Q 002519 649 ATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 727 (913)
Q Consensus 649 asgs~Dg~V~vwd~~~~~~~~-~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs 727 (913)
..-+.||.|+-+++...+... .-..|...-. ...-+..|++|+.||.|.+|...-.+.....+......|.++.-.
T Consensus 34 ~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~---v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 34 RATSADGLVRERKVRKHKESCRSERFIDEGQR---VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred ccccCCcccccchhhhhhhhhhhhhhhhccee---ecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 334567777777765322111 1111222111 112356799999999999999875444444443344445444333
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 002519 728 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ 790 (913)
Q Consensus 728 p~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~ 790 (913)
-+...+.++++.||.|+.|++.-.+.+.....+.. .++..+++.+.++.|.+|++...
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-----~~~e~~ivv~sd~~i~~a~~S~d 168 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-----ESGEELIVVGSDEFLKIADTSHD 168 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccC-----CCcceeEEecCCceEEeeccccc
Confidence 33344888999999999999988776654433221 23345555555666666655443
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.77 Score=56.08 Aligned_cols=27 Identities=30% Similarity=0.252 Sum_probs=21.5
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEE
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVL 659 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~v 659 (913)
.-.|..|.++++|++||..|..|.+.+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 346899999999999999987664443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.45 Score=58.31 Aligned_cols=140 Identities=10% Similarity=0.100 Sum_probs=88.3
Q ss_pred CEEEEEEecCCCEEEEEe--CCCcEEEEECCCCceee-----Eec------cCCCCeEEEEECCCCC-EEEEEeCCCeEE
Q 002519 635 KVICCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKT-----NLE------EHSSLITDVRFSPSMP-RLATSSFDKTVR 700 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs--~Dg~V~vwd~~~~~~~~-----~l~------~h~~~V~~l~fspdg~-~Lasgs~Dg~V~ 700 (913)
.|..+...+|++..++.. .+-.|++||+++..... -|+ .....+.|+.|+|.-. ..+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455566667776655543 33478899987543221 122 2233466888988644 456677799999
Q ss_pred EEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-------eCCceEEEEecCCCEE
Q 002519 701 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------KGGTAQMRFQPHLGRY 773 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-------~~~~~~v~~s~~~~~l 773 (913)
|..+.-....+..+ .....++|++|+|.|+.++ .|...|++.-|...-. ..+.+ ...+.+++|.....++
T Consensus 182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~-iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLF-IGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhccc-CcccceeeEEeccccceee-EecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEE
Confidence 98886533333332 3556789999999998776 8888999988876532 22222 1356778887766555
Q ss_pred EEEE
Q 002519 774 LAAA 777 (913)
Q Consensus 774 l~~~ 777 (913)
++.+
T Consensus 259 vvy~ 262 (1405)
T KOG3630|consen 259 VVYG 262 (1405)
T ss_pred EEec
Confidence 5543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.9 Score=45.94 Aligned_cols=154 Identities=12% Similarity=0.079 Sum_probs=88.7
Q ss_pred CEEEEEEecCCCEEEEEe---CCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE-cCCCCce
Q 002519 635 KVICCHFSSDGKLLATGG---HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD-ADNPGYS 710 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs---~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd-l~~~~~~ 710 (913)
.+...++++||..+|... ....++++... .....+. ....++.-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 689999999999877665 23345555433 3333322 223788899999987777777677777774 2222222
Q ss_pred eEEecc--CCCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002519 711 LRTFMG--HSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 711 ~~~~~~--h~~~V~sl~fsp~~~~ll~sgs~--Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D 786 (913)
...... ....|.++.++|||.++++.... ++.|.+--+.... ++.-.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~--------------------------~g~~~--- 152 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG--------------------------DGVPR--- 152 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC--------------------------CCCcc---
Confidence 222211 11289999999999998766633 3445443332111 11000
Q ss_pred CCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002519 787 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 787 ~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d 821 (913)
.....+.........++.+.|.+++.+++.+...
T Consensus 153 -~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 153 -RLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred -eeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence 0001111122234678999999999877776654
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=95.52 E-value=1.2 Score=49.76 Aligned_cols=173 Identities=9% Similarity=-0.005 Sum_probs=79.3
Q ss_pred CeEEEEEeCC-----CcEEEEEcCCCeeeEEee-------CCc-eEEEEecCCCEEEEEEcC-----------CeEEEEE
Q 002519 731 DDLICSCDGD-----GEIRYWSINNGSCTRVFK-------GGT-AQMRFQPHLGRYLAAAAE-----------NVVSILD 786 (913)
Q Consensus 731 ~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~-------~~~-~~v~~s~~~~~ll~~~~d-----------g~I~i~D 786 (913)
+.+++.|+.+ ..|.+||+.+.+....-. ... .......++..++.++.+ ..|.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 4566677653 357889988765443211 111 111222334455555543 2577889
Q ss_pred CCCCeEEEEecC----CCCCeEEEEEcCCCCEEEEEeC--------------CeEEEEECCCCCCCceEEEeec-C-CCc
Q 002519 787 AETQACRLSLQG----HTKPIDSVCWDPSGELLASVSE--------------DSVRVWTVGSGSEGECVHELSC-N-GNK 846 (913)
Q Consensus 787 ~~t~~~~~~l~~----h~~~V~sl~~spdg~~l~s~s~--------------d~I~vwdl~~~~~~~~i~~~~~-~-~~~ 846 (913)
.++.+-...-.. ....-.+++. -++++++.++. +.|.+||+.+.. ...+..... . ...
T Consensus 166 ~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~-W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 166 IADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK-WTEVETTGAKPSARS 243 (341)
T ss_pred CCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc-EEeccccCCCCCCcc
Confidence 887643321110 0111112222 24565554431 257888886542 122211100 0 111
Q ss_pred eEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCcEEEEccc------CCC--eEEEEEeCCCCEEEEEe
Q 002519 847 FHSCVFHPTYPSLLVIGCY--------------QSLELWNMSENKTMTLTAH------EGL--IAALAVSTETGYVASAS 904 (913)
Q Consensus 847 i~~l~~sp~g~~l~s~s~d--------------g~I~iwd~~~~~~~~~~~h------~~~--V~~l~~spdg~~Lasgs 904 (913)
..++ ..-++..++.|+.. +.|+.||..+..-..+... ... ..++.+.-++++++.|+
T Consensus 244 ~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 244 VFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGG 322 (341)
T ss_pred eeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcC
Confidence 1222 22345666666641 2678888877664433211 111 12333344556777777
Q ss_pred CC
Q 002519 905 HD 906 (913)
Q Consensus 905 ~D 906 (913)
.+
T Consensus 323 ~~ 324 (341)
T PLN02153 323 KL 324 (341)
T ss_pred cC
Confidence 64
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=6.6 Score=44.76 Aligned_cols=109 Identities=12% Similarity=0.112 Sum_probs=66.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCc--eEEEeec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002519 800 TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE--CVHELSC--NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 800 ~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~--~i~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 875 (913)
...+.++.|.+++.+++++..+.+ +|....+.... .+.+... ....+..+.|.+++. +++++..|.|.+.. ..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~ 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DG 356 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CC
Confidence 456889999999998887765543 33333332111 2222222 223578888887766 66666777666653 44
Q ss_pred CcEEEE----cccCCCeEEEEEeCCCCEEEEEeCCCcEEEe
Q 002519 876 NKTMTL----TAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 876 ~~~~~~----~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
++.... ..-...++.+.|..+++.+++ +.+|.|.-|
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 554322 233567889999877766654 568877665
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.53 Score=47.20 Aligned_cols=176 Identities=15% Similarity=0.118 Sum_probs=95.5
Q ss_pred CCCEEEEEeC--CCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceE
Q 002519 686 SMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 763 (913)
Q Consensus 686 dg~~Lasgs~--Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~ 763 (913)
++.++.+.+. ...|++||+++ +..+....-....+..=-...-++.+..-.-.||.-.++|.++.+++..+.-.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~-gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTT-GQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccC-ceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4556666654 45799999997 44443332222222221122224445555667899999999999888777654444
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe----cC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCc--
Q 002519 764 MRFQPHLGRYLAAAAENVVSILDAETQACRLSL----QG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE-- 835 (913)
Q Consensus 764 v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l----~~-h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~-- 835 (913)
-....++..++.+....+++.-|.++.....++ .+ .-..++.+.|- +|.+.+-.-.. .|...|..+++...
T Consensus 134 WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 134 WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred eeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 444556666777766677777777765433322 22 11223334443 45544444333 44445554442111
Q ss_pred -------eEEEeecCCCceEEEEEeCCCCEEEEEE
Q 002519 836 -------CVHELSCNGNKFHSCVFHPTYPSLLVIG 863 (913)
Q Consensus 836 -------~i~~~~~~~~~i~~l~~sp~g~~l~s~s 863 (913)
.+.....+.+..+.+++.|....|+..+
T Consensus 213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 1111122344567888888876555554
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.56 Score=56.08 Aligned_cols=183 Identities=10% Similarity=0.055 Sum_probs=87.3
Q ss_pred cCCCEEEEEeCCC------cEEEEECCCCceee--EeccCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEEcCCCCc
Q 002519 643 SDGKLLATGGHDK------KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPGY 709 (913)
Q Consensus 643 pdg~~Lasgs~Dg------~V~vwd~~~~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~V~Iwdl~~~~~ 709 (913)
.++.+++.||.++ .+..||..+.+-.. .+.........+.+ ++++++.|+.+ ..+.+||..+...
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3556777776542 57788877654322 11111122222332 56677788765 3577888876332
Q ss_pred eeEEeccCCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEcCCCeeeEEee--CCc-eEEEEecCCCEEEEEEcC-
Q 002519 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFK--GGT-AQMRFQPHLGRYLAAAAE- 779 (913)
Q Consensus 710 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D------g~I~iwdl~~~~~~~~~~--~~~-~~v~~s~~~~~ll~~~~d- 779 (913)
....-..+...-.+++.. ++.+++.|+.+ ..+.+||+.+.+....-. ... .......++..+++|+.+
T Consensus 371 ~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 371 REEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISY 448 (534)
T ss_pred eeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccC
Confidence 211100111111122222 34566666632 458899988765443211 111 111222344445555432
Q ss_pred -------CeEEEEECCCCeEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCC
Q 002519 780 -------NVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSG 831 (913)
Q Consensus 780 -------g~I~i~D~~t~~~~~~--l~~h~~~V~sl~~spdg~~l~s~s~d------~I~vwdl~~~ 831 (913)
..+.+||..+.+-... +.........+.+ ++++++.|+.+ .|.+||..+.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2388899887654322 1111111112222 56666666643 5777777543
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=95.21 E-value=7.1 Score=44.15 Aligned_cols=187 Identities=11% Similarity=0.023 Sum_probs=96.6
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEeccC--CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCce-EE
Q 002519 688 PRLATSSFDKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA-QM 764 (913)
Q Consensus 688 ~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h--~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~-~v 764 (913)
..++.+..||.|.-.|.++ +..+...... ...+.+-.+..+|+ |+.++.++.++.+|.++++.+..++.... .+
T Consensus 69 g~v~~~~~~G~i~A~d~~~-g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDT-GLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CeEEEecCCCcEEEEeCCC-CcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 3555557788888888877 3322221111 12222222333554 44788899999999998988887776551 11
Q ss_pred --EEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCC---CeEEEEEcCCCCEEEEEeC--C-eEEEEECCCCCCCce
Q 002519 765 --RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK---PIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGEC 836 (913)
Q Consensus 765 --~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~---~V~sl~~spdg~~l~s~s~--d-~I~vwdl~~~~~~~~ 836 (913)
........++..+.++.+...|..+++.+........ .+..--...++ .++.+.. + .+.-+|..++...-.
T Consensus 146 ~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 146 ASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred ecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeee
Confidence 1122234555555789999999999988777543221 11111111223 3333333 3 455556655522111
Q ss_pred EEE-eecCCCce------EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002519 837 VHE-LSCNGNKF------HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 837 i~~-~~~~~~~i------~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 879 (913)
.+. .......+ ..-...-+ ..++.++.++.+..+|..+++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeeecccCcccccccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceE
Confidence 100 00000000 00001111 22466677777888888888877
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.25 Score=60.18 Aligned_cols=72 Identities=25% Similarity=0.388 Sum_probs=58.8
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEE---EECCCCCEEEEEeCCCeEEEEEc
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV---RFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 631 ~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l---~fspdg~~Lasgs~Dg~V~Iwdl 704 (913)
.-.++|+|++|+-||++++.|-.+|.|.+||+..++..+.+..|..+++.+ .+..++..++++...|. +|.+
T Consensus 128 ~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 128 RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 456899999999999999999999999999999999999888776665554 44556667888877775 5554
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.12 E-value=3.5 Score=50.47 Aligned_cols=94 Identities=12% Similarity=0.137 Sum_probs=49.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee
Q 002519 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 754 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~ 754 (913)
.-.|..|.++++|++|+..|..| |.|..+.........+.+....|.|=.+.-+ ..++ .....
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~-~~~~-~~~~~-------------- 146 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVD-ERFF-TSNSS-------------- 146 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEec-hhhc-cCCCC--------------
Confidence 34688999999999999998866 5555553211111223333333333332221 2222 11111
Q ss_pred EEeeCCceEEEEecC---CCEEEEEEcCCeEEEEECCC
Q 002519 755 RVFKGGTAQMRFQPH---LGRYLAAAAENVVSILDAET 789 (913)
Q Consensus 755 ~~~~~~~~~v~~s~~---~~~ll~~~~dg~I~i~D~~t 789 (913)
..+..+.|+|. +..+++-.+|+++++||+..
T Consensus 147 ----~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 147 ----LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ----ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 12234556655 36677777777777777654
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.19 Score=61.45 Aligned_cols=142 Identities=11% Similarity=0.030 Sum_probs=92.2
Q ss_pred CeEEEEECCCCCEEEEE--eCCCeEEEEEcCCCCce----eEEe------ccCCCCeEEEEEcCCCCeEEEEEeCCCcEE
Q 002519 677 LITDVRFSPSMPRLATS--SFDKTVRVWDADNPGYS----LRTF------MGHSASVMSLDFHPNKDDLICSCDGDGEIR 744 (913)
Q Consensus 677 ~V~~l~fspdg~~Lasg--s~Dg~V~Iwdl~~~~~~----~~~~------~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~ 744 (913)
.|..+...+|+...++. +.+-.|.+||+++-... .+-+ ........++.|.|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555566676655444 34557899999752111 1111 122345667889887655567788899999
Q ss_pred EEEcCCCee-eE--EeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC---C-CCCeEEEEEcCCCCEEEE
Q 002519 745 YWSINNGSC-TR--VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG---H-TKPIDSVCWDPSGELLAS 817 (913)
Q Consensus 745 iwdl~~~~~-~~--~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~---h-~~~V~sl~~spdg~~l~s 817 (913)
+..+..... +. .+....++++|++.|..++++-..|++.-|...-. ....+.+ . ...|.+|+|.....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 988764322 11 23446788999999999999999999988865432 2222222 1 367999999988887776
Q ss_pred Ee
Q 002519 818 VS 819 (913)
Q Consensus 818 ~s 819 (913)
.+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 54
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.48 Score=53.27 Aligned_cols=140 Identities=11% Similarity=0.103 Sum_probs=94.6
Q ss_pred CCCEEE-EEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCC-------eEEEEEeCCCcEEEEEcCCCe-eeE-
Q 002519 686 SMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-------DLICSCDGDGEIRYWSINNGS-CTR- 755 (913)
Q Consensus 686 dg~~La-sgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~-------~ll~sgs~Dg~I~iwdl~~~~-~~~- 755 (913)
|..+|+ .|.....++-.|++. ++.+..+.-|... -+.|.|+.+ ..| +|-.+..|.-.|.+-.. .+.
T Consensus 478 dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeeccc-ceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence 444444 344455677778876 7778888777665 367777532 123 45567777777765432 222
Q ss_pred -EeeCCceEEEE----ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 002519 756 -VFKGGTAQMRF----QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 829 (913)
Q Consensus 756 -~~~~~~~~v~~----s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~ 829 (913)
.++.-.+.-.| ....+++++++..|.|++||.-..+....+.+....|..|..+.+|++|++.|...+.+-|++
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 22222222223 234589999999999999997766666667777889999999999999999999888888875
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=4.9 Score=44.83 Aligned_cols=147 Identities=11% Similarity=0.082 Sum_probs=82.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcee-EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002519 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 753 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~-~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~ 753 (913)
...+.++.+.+++.+++++. .|.+.. ..+..+... .....-...++++.+.+++. ++++ +..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEE-ecCCEEEEccCCCCCc
Confidence 45789999999886665554 554432 222222222 22234456789999999876 4434 4467665433444433
Q ss_pred eEEee-------CCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe---cCCCCCeEEEEEcCCCCEEEEEeCCeE
Q 002519 754 TRVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWDPSGELLASVSEDSV 823 (913)
Q Consensus 754 ~~~~~-------~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l---~~h~~~V~sl~~spdg~~l~s~s~d~I 823 (913)
-.... .....+.+.+++ .+++++.+|.|.. ....++.-... ..-...++.+.|..+++.+++|..+.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~-~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPG-EIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCC-CEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 22211 123456677754 4666667776553 23333222222 122245788888888888888887777
Q ss_pred EEEE
Q 002519 824 RVWT 827 (913)
Q Consensus 824 ~vwd 827 (913)
..|+
T Consensus 326 l~~~ 329 (334)
T PRK13684 326 LRYV 329 (334)
T ss_pred EEec
Confidence 6665
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.3 Score=44.66 Aligned_cols=171 Identities=13% Similarity=0.134 Sum_probs=91.3
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEEcCCCCceeEEeccCCCC
Q 002519 644 DGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSAS 720 (913)
Q Consensus 644 dg~~Lasgs~--Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~Iwdl~~~~~~~~~~~~h~~~ 720 (913)
+|.++.+.+. ...|++||+.+++.+..-.-....+..=-...-+.++..- =.||.-.++|.++ -+++..+. ..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t-~~~lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT-LEELGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHH-hhhhcccc-cCCc
Confidence 5566666553 3479999999988776554322112111111123333322 3478888898887 34444433 2344
Q ss_pred eEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----C----CceEEEEecCCCEEEEE-EcCCeEEEEECCCCe
Q 002519 721 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----G----GTAQMRFQPHLGRYLAA-AAENVVSILDAETQA 791 (913)
Q Consensus 721 V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~----~~~~v~~s~~~~~ll~~-~~dg~I~i~D~~t~~ 791 (913)
-+.++. |++.++ .++...+++.-|.++.....++. + ..+.+.|. + +.+++- -.+..|...|..+++
T Consensus 133 GWgLt~--d~~~Li-msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-d-G~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 133 GWGLTS--DDKNLI-MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-D-GELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred ceeeec--CCcceE-eeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-c-cEEEEeeeeecceEEEcCCCCc
Confidence 455544 456666 45555677777776654433321 1 11112221 1 333332 235566666777776
Q ss_pred EEEEec------------CCCCCeEEEEEcCCCCEEEEEeCC
Q 002519 792 CRLSLQ------------GHTKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 792 ~~~~l~------------~h~~~V~sl~~spdg~~l~s~s~d 821 (913)
.+..+. .|.+..+.|++.|++..|+..+..
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 665443 244567889999988655554443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.97 Score=51.16 Aligned_cols=104 Identities=11% Similarity=0.037 Sum_probs=60.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCeEEEE-ECCCCC----CCc-eEEEeecC----CCceEEEEEeCCCCEEEEEEcC-----
Q 002519 801 KPIDSVCWDPSGELLASVSEDSVRVW-TVGSGS----EGE-CVHELSCN----GNKFHSCVFHPTYPSLLVIGCY----- 865 (913)
Q Consensus 801 ~~V~sl~~spdg~~l~s~s~d~I~vw-dl~~~~----~~~-~i~~~~~~----~~~i~~l~~sp~g~~l~s~s~d----- 865 (913)
...+.++|.++| +++ ++...|..| |..... ..+ .+..+... ......++|.|+|.+.++.+..
T Consensus 72 ~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV 149 (367)
T ss_pred CCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence 446788999888 444 445555544 443221 112 22223221 2346789999999866655521
Q ss_pred --------------CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 866 --------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 866 --------------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
+.|.-++..+++...+...-.....++|+++|+++++-..+
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 34566666665554443334456789999999887765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=94.85 E-value=11 Score=44.31 Aligned_cols=172 Identities=8% Similarity=-0.001 Sum_probs=81.4
Q ss_pred CeEEEEEeCC-------CcEEEEEcCCCeeeEEee-C--C---ceEE-EEecCCCEEEEEEcC-----CeEEEEECCCCe
Q 002519 731 DDLICSCDGD-------GEIRYWSINNGSCTRVFK-G--G---TAQM-RFQPHLGRYLAAAAE-----NVVSILDAETQA 791 (913)
Q Consensus 731 ~~ll~sgs~D-------g~I~iwdl~~~~~~~~~~-~--~---~~~v-~~s~~~~~ll~~~~d-----g~I~i~D~~t~~ 791 (913)
+.+++.|+.+ ..+.+||+++.+....-. + . .... .....+..++.++.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4566666643 347788888765442211 0 0 0111 122333444555543 468889998865
Q ss_pred EEEEecC----CCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCCceEEEee--cCCCceEEEEEeCCCCEE
Q 002519 792 CRLSLQG----HTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSL 859 (913)
Q Consensus 792 ~~~~l~~----h~~~V~sl~~spdg~~l~s~s~d------~I~vwdl~~~~~~~~i~~~~--~~~~~i~~l~~sp~g~~l 859 (913)
-...-.. ....-.+++. -++++++.|+.+ .+.+||+.+.. ...+.... .....-..++. -+++.+
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~R~~~~~~~-~~gkiy 332 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK-WFHCSTPGDSFSIRGGAGLEV-VQGKVW 332 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE-EEeCCCCCCCCCCCCCcEEEE-ECCcEE
Confidence 4332111 1111122222 245666666542 46778876531 11111000 00011112222 256666
Q ss_pred EEEEcC----CeEEEEECCCCcEEEEccc-----CCCeEEEEEeCCCCEEEEEeCC
Q 002519 860 LVIGCY----QSLELWNMSENKTMTLTAH-----EGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 860 ~s~s~d----g~I~iwd~~~~~~~~~~~h-----~~~V~~l~~spdg~~Lasgs~D 906 (913)
++++.+ ..|.+||+.+.+-..+... .....+ +..-++++++.|+.+
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~-~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFA-SAAVGKHIVIFGGEI 387 (470)
T ss_pred EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeE-EEEECCEEEEECCcc
Confidence 777655 4689999998876544322 111122 223356677777753
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.0096 Score=66.12 Aligned_cols=139 Identities=12% Similarity=0.198 Sum_probs=101.8
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe
Q 002519 678 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 757 (913)
Q Consensus 678 V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~ 757 (913)
-....|.+.+..++.++.+..|..||-.. ..... .........++|..+++.+++.+...+.+.+||+.+......-
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~ag--q~~le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAG--QVILE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhc--ceecc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 34556788888899999999999998763 22222 2345566779999988888888888999999999865322211
Q ss_pred eCC---ceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 002519 758 KGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 819 (913)
Q Consensus 758 ~~~---~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s 819 (913)
.++ ..-+.|++....++.+...+.+.||...+.+.+.....|...+++++|.+.+..+...+
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dc 178 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDC 178 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCc
Confidence 111 12256888888888888899999999988877766666999999999998776554443
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=94.80 E-value=5.8 Score=43.16 Aligned_cols=186 Identities=12% Similarity=0.138 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCceeEEecc------CCCCeEEEEEcCCC-----CeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEE
Q 002519 698 TVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNK-----DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 766 (913)
Q Consensus 698 ~V~Iwdl~~~~~~~~~~~~------h~~~V~sl~fsp~~-----~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~ 766 (913)
+|.+||+.+ ...++++.- ..+.+..+.+.... ...+++=+..+.|.++|+.+++..+...... ..
T Consensus 35 KLv~~Dl~t-~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~---~~ 110 (287)
T PF03022_consen 35 KLVAFDLKT-NQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSF---SP 110 (287)
T ss_dssp EEEEEETTT-TCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGC---TT
T ss_pred EEEEEECCC-CcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCc---ce
Confidence 577778877 445554431 34567777776532 2334444455789999999998877765411 11
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcC---CCCEEEEEeCCeEEEEECCC-----CCC-----
Q 002519 767 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP---SGELLASVSEDSVRVWTVGS-----GSE----- 833 (913)
Q Consensus 767 s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp---dg~~l~s~s~d~I~vwdl~~-----~~~----- 833 (913)
.|....+.. +| .. .... ..+..++.+| ++++|+-..-...++|.+.+ ...
T Consensus 111 ~p~~~~~~i---~g----------~~-~~~~---dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~ 173 (287)
T PF03022_consen 111 DPDAGPFTI---GG----------ES-FQWP---DGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQA 173 (287)
T ss_dssp S-SSEEEEE---TT----------EE-EEET---TSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-
T ss_pred eccccceec---cC----------ce-EecC---CCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCcccccccc
Confidence 111111111 11 11 1111 2277778766 77788777665445555432 111
Q ss_pred -CceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC----cE-E-EEccc-CCCeEEEEEeC--CCCEEEEE
Q 002519 834 -GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN----KT-M-TLTAH-EGLIAALAVST--ETGYVASA 903 (913)
Q Consensus 834 -~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~----~~-~-~~~~h-~~~V~~l~~sp--dg~~Lasg 903 (913)
...+..+-........++++++|..+++--..+.|..|+..+. .. + ..... -..+.++.+.+ +|.+.+.+
T Consensus 174 ~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 174 LASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 1122333222345667889999988888888899999998872 22 2 22222 35788999998 77766655
Q ss_pred e
Q 002519 904 S 904 (913)
Q Consensus 904 s 904 (913)
+
T Consensus 254 n 254 (287)
T PF03022_consen 254 N 254 (287)
T ss_dssp -
T ss_pred C
Confidence 4
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.083 Score=40.21 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=29.4
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK 666 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~ 666 (913)
...|.+++|+|...+||.|+.+|.|.||.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.74 E-value=2.2 Score=50.64 Aligned_cols=191 Identities=11% Similarity=0.045 Sum_probs=90.6
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 712 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 712 (913)
.+.+.+|..+|....=+. +.--.|+||++. |..+..+.-....+..+.|+.+ ..|++...||+|+||++.. ..+.
T Consensus 43 ~gGpIAV~r~p~~~~~~~-~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~g--e~ie 117 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY-SARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLG--EFIE 117 (829)
T ss_pred cCCceEEEeccccccccc-ccceeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecch--hhhc
Confidence 344555555553211111 233458888864 5555555444457889999965 4677788899999999974 2222
Q ss_pred Ee----ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeC-C---ceEEEEecCC----CEEEEEEc-C
Q 002519 713 TF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-G---TAQMRFQPHL----GRYLAAAA-E 779 (913)
Q Consensus 713 ~~----~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-~---~~~v~~s~~~----~~ll~~~~-d 779 (913)
.+ ..-...|..+.|..+| ++ .-..+|.|.+-+-......+.++. + ....+|.... ..++..-. .
T Consensus 118 ~~svg~e~~~~~I~ec~~f~~G--Va-vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~ 194 (829)
T KOG2280|consen 118 SNSVGFESQMSDIVECRFFHNG--VA-VLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVA 194 (829)
T ss_pred ccccccccccCceeEEEEecCc--eE-EEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechh
Confidence 21 1122334444444443 32 223345554433222222222221 1 1112222111 11111110 0
Q ss_pred CeEEEEECCCCe-EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002519 780 NVVSILDAETQA-CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 831 (913)
Q Consensus 780 g~I~i~D~~t~~-~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~ 831 (913)
-...++-..+.. ....+......+..+..+|+.++|+--... .|.+-++...
T Consensus 195 v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 195 VGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred hhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 001111111111 111122123557788999999988877766 7777766543
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=94.65 E-value=2.7 Score=46.62 Aligned_cols=100 Identities=10% Similarity=0.084 Sum_probs=49.5
Q ss_pred CeEEEEEeCC-----CcEEEEEcCCCeee---EEe---eCCce-EEEEecCCCEEEEEEc-----CCeEEEEECCCCeEE
Q 002519 731 DDLICSCDGD-----GEIRYWSINNGSCT---RVF---KGGTA-QMRFQPHLGRYLAAAA-----ENVVSILDAETQACR 793 (913)
Q Consensus 731 ~~ll~sgs~D-----g~I~iwdl~~~~~~---~~~---~~~~~-~v~~s~~~~~ll~~~~-----dg~I~i~D~~t~~~~ 793 (913)
+.+++.|+.+ ..+..||+.+.+.. ..+ ..... ..+...++..++.++. ...+..||+.+.+-.
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 4566677654 35777787766531 111 11111 1122234445555553 246888998876433
Q ss_pred E--EecCCCCCeEEEEEcCCCCEEEEEeCC-----eEEEEECCCC
Q 002519 794 L--SLQGHTKPIDSVCWDPSGELLASVSED-----SVRVWTVGSG 831 (913)
Q Consensus 794 ~--~l~~h~~~V~sl~~spdg~~l~s~s~d-----~I~vwdl~~~ 831 (913)
. .+... ......+..-++++++.|+.+ .+.+||..+.
T Consensus 153 ~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 153 ELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2 12211 112222233356777777654 3567888654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.65 E-value=3.3 Score=46.07 Aligned_cols=77 Identities=8% Similarity=0.029 Sum_probs=43.3
Q ss_pred EEEEecCCCCCeEEEEEcC-------CCCEEEEEeCC-eEEEEECCCCCCCceEEEe-ecCCCceEEEEEeCCCCEEEEE
Q 002519 792 CRLSLQGHTKPIDSVCWDP-------SGELLASVSED-SVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSLLVI 862 (913)
Q Consensus 792 ~~~~l~~h~~~V~sl~~sp-------dg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~-~~~~~~i~~l~~sp~g~~l~s~ 862 (913)
++..+..| ..+..+.|.. .|.+|++.-.. .|....+...........+ ......+..+++.|||.++++.
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD 323 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE
Confidence 34444434 5566666654 34466655555 7777777544322222232 2334478999999999888877
Q ss_pred EcCCeEE
Q 002519 863 GCYQSLE 869 (913)
Q Consensus 863 s~dg~I~ 869 (913)
..+|.|+
T Consensus 324 d~~G~iy 330 (331)
T PF07995_consen 324 DSDGKIY 330 (331)
T ss_dssp -TTTTEE
T ss_pred CCCCeEe
Confidence 7777764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.64 E-value=4.4 Score=41.45 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=40.0
Q ss_pred CEEEEEeCCCcEEEEECC--CCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---C---eEEEE
Q 002519 646 KLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---K---TVRVW 702 (913)
Q Consensus 646 ~~Lasgs~Dg~V~vwd~~--~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g---~V~Iw 702 (913)
+.|+.+...++|.+|++. ......+|..- +.|..+.++..|++|+|--.+ . .+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 355444667789999988 34455566544 789999999999999987442 2 56664
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=94.59 E-value=13 Score=44.06 Aligned_cols=246 Identities=13% Similarity=0.122 Sum_probs=118.3
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCc--eeeEeccC-CCCeEEEEECCCC-CEEEEEeCCCeEEEEEcCCCC-ceeEEecc
Q 002519 642 SSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEH-SSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPG-YSLRTFMG 716 (913)
Q Consensus 642 spdg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~h-~~~V~~l~fspdg-~~Lasgs~Dg~V~Iwdl~~~~-~~~~~~~~ 716 (913)
..++..++.+..+|.++...+.... .....-+. ....+++.+..++ .+|+.||.-|.=.++.+.... ..+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 4567789999999999988776433 11222222 4556677776554 477778774443344333212 2233333
Q ss_pred CCCCeEEEEEcCC---CC-------eEEEEEe--CCCcEEEEEcCCCee---eEEeeC-CceEEEEecC---CCEEEEEE
Q 002519 717 HSASVMSLDFHPN---KD-------DLICSCD--GDGEIRYWSINNGSC---TRVFKG-GTAQMRFQPH---LGRYLAAA 777 (913)
Q Consensus 717 h~~~V~sl~fsp~---~~-------~ll~sgs--~Dg~I~iwdl~~~~~---~~~~~~-~~~~v~~s~~---~~~ll~~~ 777 (913)
.-++|.++++... +. .++++++ .+|.+++..-.-+-. ...... ++..+-..+. ...+++.+
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S 377 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLS 377 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEE
Confidence 5578888888532 12 4554433 467888774321111 111111 1222211111 13344444
Q ss_pred cCCeEEEEECC---CCeEEEEec--CC---CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeec-CCCceE
Q 002519 778 AENVVSILDAE---TQACRLSLQ--GH---TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC-NGNKFH 848 (913)
Q Consensus 778 ~dg~I~i~D~~---t~~~~~~l~--~h---~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~-~~~~i~ 848 (913)
....-+++.+. ..+.+..+. +. ...+.+..+. +.+++=.....|++.+.... .....+.. .+..|.
T Consensus 378 ~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~I~ 452 (504)
T PF10433_consen 378 FPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSIIV 452 (504)
T ss_dssp ESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS---S
T ss_pred cCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCeEE
Confidence 44444444442 333332221 11 2223333333 55677677778889987554 34434322 233444
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc-----ccCCCeEEEEEeC
Q 002519 849 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-----AHEGLIAALAVST 895 (913)
Q Consensus 849 ~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~-----~h~~~V~~l~~sp 895 (913)
+++. ++..++++..++.+.++.+...... ... .....|.|+...|
T Consensus 453 ~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 453 AASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 4444 3457888888899999988877664 211 2567888888766
|
... |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.052 Score=64.36 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=76.6
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEE-----------ECCCCCEEEEEeCCCeEEEEE
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR-----------FSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 635 ~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~-----------fspdg~~Lasgs~Dg~V~Iwd 703 (913)
.|..+-|-++.-++..+-.+++|+|..+++... ..+.+|...+++++ .+|||+.|++++.||.|+.|-
T Consensus 185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred eeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 344444445667888888899999888765433 55666877776654 489999999999999999987
Q ss_pred cCCCC----ceeEEeccCC-CCeEEEEEcCC-------CC--eEEEEEeCCCcEEEEEcCCCeee
Q 002519 704 ADNPG----YSLRTFMGHS-ASVMSLDFHPN-------KD--DLICSCDGDGEIRYWSINNGSCT 754 (913)
Q Consensus 704 l~~~~----~~~~~~~~h~-~~V~sl~fsp~-------~~--~ll~sgs~Dg~I~iwdl~~~~~~ 754 (913)
+.-.+ .++..++.|+ .+-.|.-|+.. +. .+|-+...+..+++|.....+|.
T Consensus 264 iyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 264 IYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 75322 3445556666 22222223321 11 22333444677999988777776
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.92 Score=53.98 Aligned_cols=125 Identities=13% Similarity=0.167 Sum_probs=83.8
Q ss_pred cceeeeEeecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEEC--CCCCEEEEEeCCCe
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFS--PSMPRLATSSFDKT 698 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~-~h~~~V~~l~fs--pdg~~Lasgs~Dg~ 698 (913)
.+....++......+.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|. |++..|++.+....
T Consensus 18 ~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 18 EWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH 97 (631)
T ss_pred EEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE
Confidence 445556666666677777777766666665556689999999776444332 457789999995 78899999999999
Q ss_pred EEEEEcC-----CCC---ceeEE--eccCC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002519 699 VRVWDAD-----NPG---YSLRT--FMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 749 (913)
Q Consensus 699 V~Iwdl~-----~~~---~~~~~--~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~ 749 (913)
|.+|.-- +.+ ..++. +..|+ .+|.+..|.++|. ++ +|+ ++.+.|+|-.
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFDKW 156 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEECCC
Confidence 9998542 111 12222 22333 6789999999875 33 332 4678888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.16 E-value=16 Score=43.39 Aligned_cols=198 Identities=12% Similarity=0.071 Sum_probs=108.0
Q ss_pred CeEEEEECCCCCEEEEEeC-----CCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc----EEEEE
Q 002519 677 LITDVRFSPSMPRLATSSF-----DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE----IRYWS 747 (913)
Q Consensus 677 ~V~~l~fspdg~~Lasgs~-----Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~----I~iwd 747 (913)
.+-.++.+||.++||-+-+ .=+++|-|+.++......+. +...+++|..|+..++++...++. |....
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 3556788999998876533 33689999988544443333 345669999999999988776652 33333
Q ss_pred cCC--CeeeEEeeCCc----eEEEEecCCCEEEEEEc---CCeEEEEECCCCeE--EEEecCCCCCeEEEEEcCCCCEEE
Q 002519 748 INN--GSCTRVFKGGT----AQMRFQPHLGRYLAAAA---ENVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLA 816 (913)
Q Consensus 748 l~~--~~~~~~~~~~~----~~v~~s~~~~~ll~~~~---dg~I~i~D~~t~~~--~~~l~~h~~~V~sl~~spdg~~l~ 816 (913)
+.+ ......++... ..+.-+....+|+.... ...+++++...... ........+--..+. ..+.+++
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~e--h~~d~f~ 284 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVE--HGGDRFY 284 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeee--ecCcEEE
Confidence 333 22222232221 12223344456655553 34778887766532 222211111111121 1244333
Q ss_pred EEeC--C-eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEE
Q 002519 817 SVSE--D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTM 879 (913)
Q Consensus 817 s~s~--d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~I~iwd~~~~~~~ 879 (913)
.-+. + ..+|+.............+..|...+.--.|+--..+|+....++ .|++++..++...
T Consensus 285 i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 285 ILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred EEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 3332 2 455655443112233345555666666666666677777776664 7888998877655
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=94.12 E-value=12 Score=44.87 Aligned_cols=151 Identities=14% Similarity=0.182 Sum_probs=79.5
Q ss_pred eeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEecC-CCCC-eEEEEEcC-----C-CCEEEEEeC---C--
Q 002519 757 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQG-HTKP-IDSVCWDP-----S-GELLASVSE---D-- 821 (913)
Q Consensus 757 ~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~--~~~~l~~-h~~~-V~sl~~sp-----d-g~~l~s~s~---d-- 821 (913)
++..+..+.+..++..+++....|.|.+||...+. .+..+.. +... +.+ +|.+ + ..++++.+. +
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcE
Confidence 45667778899999999999999999999993322 1112221 2221 111 2322 1 234443333 2
Q ss_pred eEEEEECCCCCCCceEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---EEc---ccC-CCeEEE
Q 002519 822 SVRVWTVGSGSEGECVHELS---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLT---AHE-GLIAAL 891 (913)
Q Consensus 822 ~I~vwdl~~~~~~~~i~~~~---~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~---~~~---~h~-~~V~~l 891 (913)
.++++.+.. ....+.++. .+......+.|+-....|+.- .++.|.+|++...+.. .+. ... ..+.++
T Consensus 207 ~ykL~~l~~--~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl 283 (670)
T PF10395_consen 207 SYKLISLSN--ESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSL 283 (670)
T ss_pred EEEEEEecc--CCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEe
Confidence 788998821 112333332 223333444444433334444 7789999999877654 222 111 234444
Q ss_pred EEeCCCCEEEEEeCCCcEEEeC
Q 002519 892 AVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 892 ~~spdg~~Lasgs~DG~I~IWd 913 (913)
.--...+.|++. +.+|++.|
T Consensus 284 ~~~s~nRvLLs~--~nkIyLld 303 (670)
T PF10395_consen 284 KPPSPNRVLLSV--NNKIYLLD 303 (670)
T ss_pred ecCCCCeEEEEc--CCEEEEEe
Confidence 432233444433 45677754
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=94.03 E-value=17 Score=45.94 Aligned_cols=134 Identities=14% Similarity=0.132 Sum_probs=70.5
Q ss_pred eEEeCCCcchhhhcccccccCCccCceeeecccCCCCCCCCCCcccccccCccceeeeEeecCCCCEEEEEEec--CCC-
Q 002519 570 QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGK- 646 (913)
Q Consensus 570 ~vWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~- 646 (913)
.||+.++..+...-.+....|.|.-++.-.+.........+.+...-+.+...........+|...|.|..+.- ++.
T Consensus 284 ivW~~rt~~l~G~~m~~s~~g~W~LdiHH~ln~~~gIl~kGnG~n~~it~~Prvitt~mgdG~qR~veC~~C~G~a~~~~ 363 (1899)
T KOG4659|consen 284 IVWQTRTSQLMGATMRKSIGGGWTLDIHHHLNIVNGILEKGNGGNRLITEEPRVITTAMGDGHQRDVECPKCEGKADSIS 363 (1899)
T ss_pred eeeeeehhhhccccccchhcCcceeecceecccccCeEEecCCcceEeecCCceEEEeccCcccccccCCCCCCccccce
Confidence 78999887665443334445555554444444444444444444433444445555556678999998877643 222
Q ss_pred EE----EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEEC---CCCC-EEEEEeCCCeEEEEEcCC
Q 002519 647 LL----ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS---PSMP-RLATSSFDKTVRVWDADN 706 (913)
Q Consensus 647 ~L----asgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fs---pdg~-~Lasgs~Dg~V~Iwdl~~ 706 (913)
+| ++.+-||.+.|=|..- ++.+.......+-+.+. +.-+ +||..--||++.|-|..+
T Consensus 364 L~aPvala~a~DGSl~VGDfNy---IRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s 428 (1899)
T KOG4659|consen 364 LFAPVALAYAPDGSLIVGDFNY---IRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLS 428 (1899)
T ss_pred eeceeeEEEcCCCcEEEccchh---eeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCc
Confidence 22 2456799998887642 22222111111112222 1122 455555677777666654
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.6 Score=52.03 Aligned_cols=108 Identities=12% Similarity=0.205 Sum_probs=69.7
Q ss_pred CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCCceEEEeecCCCceEEEEE--eCCCCEEEEEEcCCeEEEEECC----
Q 002519 802 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF--HPTYPSLLVIGCYQSLELWNMS---- 874 (913)
Q Consensus 802 ~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~--sp~g~~l~s~s~dg~I~iwd~~---- 874 (913)
...-+.-+.-++..++.+.. .+.|||.+.+. .+....+ .....|..+.| .|++..|++.|..+.|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 34444455555544444444 99999998763 1222222 34677888887 5689999999999999998531
Q ss_pred -CC-------cEEEEcccC-CCeEEEEEeCCCCEEEEEeCCCcEEEeC
Q 002519 875 -EN-------KTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 875 -~~-------~~~~~~~h~-~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.. +.+.+..|+ .+|.+.+|.++|.+++.+| ..+.|++
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 11 122344555 6899999999997666553 3466654
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.92 E-value=4.1 Score=45.62 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=81.6
Q ss_pred eCCCcEEEEECCC--Cc-eeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCC---ceeEEeccCCCCeEEEE
Q 002519 652 GHDKKAVLWHTDT--LK-SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG---YSLRTFMGHSASVMSLD 725 (913)
Q Consensus 652 s~Dg~V~vwd~~~--~~-~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~---~~~~~~~~h~~~V~sl~ 725 (913)
...|.+.=|-+.. .. .+..-....++|.+|+|++|.+.||+--.|++|.+++..... ....+.+..+..|...+
T Consensus 40 vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~ 119 (657)
T KOG2377|consen 40 VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFC 119 (657)
T ss_pred EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEE
Confidence 3344455555442 12 222223456799999999999999999999999999984321 11223334455688999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCC----eeeEEeeCCceEEEEecCCCEEEEEEc--CCeEEEEECCC
Q 002519 726 FHPNKDDLICSCDGDGEIRYWSINNG----SCTRVFKGGTAQMRFQPHLGRYLAAAA--ENVVSILDAET 789 (913)
Q Consensus 726 fsp~~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~~~~~~~v~~s~~~~~ll~~~~--dg~I~i~D~~t 789 (913)
|....+ +. ... +..|.+|-+... +.++..+..+....|.++...++.++. .+++.-+-+++
T Consensus 120 W~~s~e-~A-~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 120 WTSSTE-IA-FIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred EecCee-EE-EEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 986633 33 222 444666655432 345556667777888888776665554 33444344443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=1.5 Score=51.51 Aligned_cols=178 Identities=7% Similarity=-0.019 Sum_probs=82.9
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCceee--EeccCCCCeEEEEECCCCCEEEEEeCC--CeEEEEEcCCCCcee-EE
Q 002519 644 DGKLLATGGHDK-----KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYSL-RT 713 (913)
Q Consensus 644 dg~~Lasgs~Dg-----~V~vwd~~~~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~D--g~V~Iwdl~~~~~~~-~~ 713 (913)
++.++++||.++ ++..||..+.+-.. .+.........+. -++...+.|+.+ ..+..||..++.... ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 355667776543 56678876543221 2221111122222 356677777754 357888876532211 11
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEEeCCC---cEEEEEcCCCeeeEEe--eCCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002519 714 FMGHSASVMSLDFHPNKDDLICSCDGDG---EIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAE 788 (913)
Q Consensus 714 ~~~h~~~V~sl~fsp~~~~ll~sgs~Dg---~I~iwdl~~~~~~~~~--~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~ 788 (913)
+....... +++.. ++.+.+.|+.++ .+..||.++.+....- ..+....+...-++.+++.+ |.+.+||.+
T Consensus 349 l~~~r~~~-~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~ 423 (480)
T PHA02790 349 LLKPRCNP-AVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCES 423 (480)
T ss_pred CCCCCccc-EEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCC
Confidence 11111111 22222 345666777553 4778888876544321 11111111112234444443 357788887
Q ss_pred CCeEEE--EecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCC
Q 002519 789 TQACRL--SLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGS 830 (913)
Q Consensus 789 t~~~~~--~l~~h~~~V~sl~~spdg~~l~s~s~d------~I~vwdl~~ 830 (913)
+.+-.. .+....... +++. -+|++.++|+.+ .|.+||..+
T Consensus 424 ~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence 764332 222111122 2222 256766666642 456666643
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.68 E-value=12 Score=41.65 Aligned_cols=142 Identities=13% Similarity=0.237 Sum_probs=79.9
Q ss_pred CCeEEEEEcCCCCeEEEEEeCCCc------EEEEEcCCC----eeeE-----Eee---C--------CceEEEEecCCCE
Q 002519 719 ASVMSLDFHPNKDDLICSCDGDGE------IRYWSINNG----SCTR-----VFK---G--------GTAQMRFQPHLGR 772 (913)
Q Consensus 719 ~~V~sl~fsp~~~~ll~sgs~Dg~------I~iwdl~~~----~~~~-----~~~---~--------~~~~v~~s~~~~~ 772 (913)
+.+..|.+.+++..++ +.+++|. ++.+++... ..+. .+. + ....+++.+++..
T Consensus 20 GGlSgl~~~~~~~~~~-avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFY-AVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEE-EEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 4566788876555554 5555666 555555431 0000 010 1 2345777555555
Q ss_pred EEEEEcC------CeEEEEECCCCeEEEEec---------------CCCCCeEEEEEcCCCCEEEEEeCC--------e-
Q 002519 773 YLAAAAE------NVVSILDAETQACRLSLQ---------------GHTKPIDSVCWDPSGELLASVSED--------S- 822 (913)
Q Consensus 773 ll~~~~d------g~I~i~D~~t~~~~~~l~---------------~h~~~V~sl~~spdg~~l~s~s~d--------~- 822 (913)
+++.-.+ ..|+.+|.. ++.+..+. .....+.+++++|+|+.|+++.+. .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 5555556 688888876 54443331 123468899999999966655321 1
Q ss_pred ------EEEEECCCCC----CCceEEEeec-----CCCceEEEEEeCCCCEEEEE
Q 002519 823 ------VRVWTVGSGS----EGECVHELSC-----NGNKFHSCVFHPTYPSLLVI 862 (913)
Q Consensus 823 ------I~vwdl~~~~----~~~~i~~~~~-----~~~~i~~l~~sp~g~~l~s~ 862 (913)
++|+.+.... .......+.. ....+..+.+-+++++++.=
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 5565554322 1122333332 45778899999999865543
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=93.52 E-value=18 Score=41.84 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=41.1
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce--eeEec-----cCCCCeEEEEECCCC
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLE-----EHSSLITDVRFSPSM 687 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~--~~~l~-----~h~~~V~~l~fspdg 687 (913)
+-..-..-+.|+|.|||++|++--..|.|++++..++.. +..+. ........|+|+|+-
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 444566789999999998887765579999998654432 21121 135678999999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=93.50 E-value=7.6 Score=43.43 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=22.4
Q ss_pred eEEEEECCCCcEEEEcccCCCe-EEEEEeCCCCEEEEEeCC
Q 002519 867 SLELWNMSENKTMTLTAHEGLI-AALAVSTETGYVASASHD 906 (913)
Q Consensus 867 ~I~iwd~~~~~~~~~~~h~~~V-~~l~~spdg~~Lasgs~D 906 (913)
.+.+||..+.+-..+....... .+.+..-++++++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccC
Confidence 5778888776544332222221 223344577788888765
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.47 E-value=3.8 Score=47.28 Aligned_cols=267 Identities=14% Similarity=0.057 Sum_probs=122.5
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCC-CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 711 (913)
..+|.++.|+..| .|-+|+.|| +..||..+++.+..-...- ..|..+..+-.+ .|..|+++| |++.+.+.....-
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 4578888888888 455566666 6667777776555443332 556655554444 677777777 7777765411110
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-ee--CCceE-E-EEecCCCEEEEEEcCCeEEEEE
Q 002519 712 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FK--GGTAQ-M-RFQPHLGRYLAAAAENVVSILD 786 (913)
Q Consensus 712 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~-~~--~~~~~-v-~~s~~~~~ll~~~~dg~I~i~D 786 (913)
.-..-....|..+.-...|. +..|++.|..+. .......... .+ ...+. . -+....+.+.+++.++.+++-+
T Consensus 240 ~~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~ 316 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQGE--LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLT 316 (671)
T ss_pred cCCCCcchheeeeecccCCC--EEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEec
Confidence 11111233444444333433 334555554433 2222221111 11 11111 1 1223345666777777666654
Q ss_pred CCCCeEEEEecCCCC-CeEEEEEcC---CCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEE
Q 002519 787 AETQACRLSLQGHTK-PIDSVCWDP---SGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 862 (913)
Q Consensus 787 ~~t~~~~~~l~~h~~-~V~sl~~sp---dg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~ 862 (913)
..- .....+....+ .+-.++..| +.......+.+.+.+-+-.++.....++.. .+..|+.+++..++ .+..+
T Consensus 317 a~w-~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~--Rg~nit~~~~d~~g-~lWlg 392 (671)
T COG3292 317 ADW-KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQL--RGMNITTTLEDSRG-RLWLG 392 (671)
T ss_pred chh-hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeec--cccccchhhhccCC-cEEEE
Confidence 431 11111111100 111111111 000000001111111111222111111111 23456666666644 46666
Q ss_pred EcCCeEEEEECCC-CcEEEEc--ccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002519 863 GCYQSLELWNMSE-NKTMTLT--AHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 863 s~dg~I~iwd~~~-~~~~~~~--~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
+..+-+..|+..+ +..+... ...+.|..+.-.|+++ |..|+.+|.+++
T Consensus 393 s~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 393 SMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred ecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 6665666677666 3333222 2456788888888888 666777877653
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=8.9 Score=43.51 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=10.0
Q ss_pred cEEEEEcCCCeeeE
Q 002519 742 EIRYWSINNGSCTR 755 (913)
Q Consensus 742 ~I~iwdl~~~~~~~ 755 (913)
.|.+||..+.+...
T Consensus 190 ~v~~YD~~t~~W~~ 203 (376)
T PRK14131 190 EVLSYDPSTNQWKN 203 (376)
T ss_pred eEEEEECCCCeeeE
Confidence 58889988766543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.21 E-value=6.6 Score=46.81 Aligned_cols=175 Identities=12% Similarity=0.219 Sum_probs=88.3
Q ss_pred CeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE------eeCCceEEEEecCC
Q 002519 697 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------FKGGTAQMRFQPHL 770 (913)
Q Consensus 697 g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~------~~~~~~~v~~s~~~ 770 (913)
-.|+||++. |..+..+.-....+..+.|+.+. .|| +...+|++++|++-....... ....+..+.+.. +
T Consensus 64 ~~I~If~~s--G~lL~~~~w~~~~lI~mgWs~~e-eLI-~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-~ 138 (829)
T KOG2280|consen 64 PYIRIFNIS--GQLLGRILWKHGELIGMGWSDDE-ELI-CVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-N 138 (829)
T ss_pred eeEEEEecc--ccchHHHHhcCCCeeeecccCCc-eEE-EEeccceEEEeecchhhhcccccccccccCceeEEEEec-C
Confidence 458888876 44444444334478889999764 355 667899999999864332221 111222233333 2
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEecC-CCCCeEEEEEc--CCC-C--EEEEEeCC-eEEEEECCCCCCCceEEEeecC
Q 002519 771 GRYLAAAAENVVSILDAETQACRLSLQG-HTKPIDSVCWD--PSG-E--LLASVSED-SVRVWTVGSGSEGECVHELSCN 843 (913)
Q Consensus 771 ~~ll~~~~dg~I~i~D~~t~~~~~~l~~-h~~~V~sl~~s--pdg-~--~l~s~s~d-~I~vwdl~~~~~~~~i~~~~~~ 843 (913)
+ +++-..+|.|.+..-.....++++.. ......+.||. +++ . .++-...- ...++-.... ....+.+...
T Consensus 139 G-Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~--~~q~~~~~~~ 215 (829)
T KOG2280|consen 139 G-VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES--RVQLHALSWP 215 (829)
T ss_pred c-eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecc--cccccccCCC
Confidence 3 33444445444443322222222222 11111112222 221 1 11111100 1112222111 1112222222
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002519 844 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 844 ~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 879 (913)
...+..|.++|+.++|+.-..+|.|.+-+++..+++
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 466888999999999999999999999988766654
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=93.14 E-value=8.1 Score=45.30 Aligned_cols=148 Identities=6% Similarity=-0.059 Sum_probs=72.2
Q ss_pred CCeEEEEEeCC-----CcEEEEEcCCCeeeEEeeC-----Cce-EEEEecCCCEEEEEEcC-----CeEEEEECCCCeEE
Q 002519 730 KDDLICSCDGD-----GEIRYWSINNGSCTRVFKG-----GTA-QMRFQPHLGRYLAAAAE-----NVVSILDAETQACR 793 (913)
Q Consensus 730 ~~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~~-----~~~-~v~~s~~~~~ll~~~~d-----g~I~i~D~~t~~~~ 793 (913)
++.+++.|+.+ ..+.+||+.+.+....... ... ......++..++.++.+ ..+..||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 34566677654 4588899887765432211 111 11222334445555543 35778888776433
Q ss_pred EEec-----CCCCCeEEEEEcCCCCEEEEEeC-----CeEEEEECCCCCCCceEEEee--cCCCceEEEEEeCCCCEEEE
Q 002519 794 LSLQ-----GHTKPIDSVCWDPSGELLASVSE-----DSVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSLLV 861 (913)
Q Consensus 794 ~~l~-----~h~~~V~sl~~spdg~~l~s~s~-----d~I~vwdl~~~~~~~~i~~~~--~~~~~i~~l~~sp~g~~l~s 861 (913)
..-. ..... ..++. -++++++.++. +.+.+||+.+.. ...+.... .......++ ..-+++.++.
T Consensus 308 ~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~ 383 (470)
T PLN02193 308 HCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFAS-AAVGKHIVIF 383 (470)
T ss_pred eCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEE-EEECCEEEEE
Confidence 2110 01111 12222 25666666553 268899987642 12221110 001112222 2335566666
Q ss_pred EEcC--------------CeEEEEECCCCcEEEE
Q 002519 862 IGCY--------------QSLELWNMSENKTMTL 881 (913)
Q Consensus 862 ~s~d--------------g~I~iwd~~~~~~~~~ 881 (913)
|+.+ ..+.+||+.+.+-..+
T Consensus 384 GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 384 GGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 6643 2578899888765533
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.29 Score=37.24 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=28.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 002519 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 675 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 705 (913)
...|.+++|+|...+||.++.||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999994
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.99 E-value=3.4 Score=42.20 Aligned_cols=55 Identities=15% Similarity=0.162 Sum_probs=39.9
Q ss_pred EecCC-CEEEEEEcCCeEEEEECCC--CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002519 766 FQPHL-GRYLAAAAENVVSILDAET--QACRLSLQGHTKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 766 ~s~~~-~~ll~~~~dg~I~i~D~~t--~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d 821 (913)
+...+ +.++++.....|.+|++.. ...+.+|.. -+.|..+.++..|+||++--++
T Consensus 23 ~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 23 VCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred eeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEee
Confidence 33334 5666667788899999883 355566653 3788999999999999987544
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=7.2 Score=44.27 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=19.8
Q ss_pred EEEEECCCCcEEEEcccCC-CeEEEEEeCCCCEEEEEeCC
Q 002519 868 LELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHD 906 (913)
Q Consensus 868 I~iwd~~~~~~~~~~~h~~-~V~~l~~spdg~~Lasgs~D 906 (913)
+.+||..+.+-..+..-.. .-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 5678887765432221111 11122344566777777753
|
|
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=92.90 E-value=13 Score=38.60 Aligned_cols=191 Identities=17% Similarity=0.199 Sum_probs=103.7
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEE--CCCCC--EEEEEeC--CCeEEEEEcCCCCc
Q 002519 636 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF--SPSMP--RLATSSF--DKTVRVWDADNPGY 709 (913)
Q Consensus 636 V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~f--spdg~--~Lasgs~--Dg~V~Iwdl~~~~~ 709 (913)
|+--+-+|+...+++....+-++|||+. ++.+..+....-.-.++.+ --.|. .|+.+|. ..+|.+|.++....
T Consensus 58 IwVh~t~P~kS~vItt~Kk~Gl~VYDLs-GkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~ 136 (364)
T COG4247 58 IWVHATNPDKSLVITTVKKAGLRVYDLS-GKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQ 136 (364)
T ss_pred eEeccCCcCcceEEEeeccCCeEEEecC-CCeeeecCCCcccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCcc
Confidence 3333445777788888888899999986 4445554432211112222 11233 3455554 46788998886554
Q ss_pred eeEEeccC-------CCCeEEEEEcC--C-CCeEEEEEeCCCcEEEEEcCC-------CeeeEEeeCCc--eEEEEecCC
Q 002519 710 SLRTFMGH-------SASVMSLDFHP--N-KDDLICSCDGDGEIRYWSINN-------GSCTRVFKGGT--AQMRFQPHL 770 (913)
Q Consensus 710 ~~~~~~~h-------~~~V~sl~fsp--~-~~~ll~sgs~Dg~I~iwdl~~-------~~~~~~~~~~~--~~v~~s~~~ 770 (913)
.+..+... ...+..++... . +..++++...+|.|.-|.+.. .+.++.|+... ..+......
T Consensus 137 ~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEt 216 (364)
T COG4247 137 YLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDET 216 (364)
T ss_pred ceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeecccc
Confidence 45444432 23455566543 3 566777888899998887743 23455555432 223333333
Q ss_pred CEEEEEEcCCeEEEEECC-------CCeEEEEecC---CCCCeE--EEEEcCCCC-EEEEEeCC--eEEEEECC
Q 002519 771 GRYLAAAAENVVSILDAE-------TQACRLSLQG---HTKPID--SVCWDPSGE-LLASVSED--SVRVWTVG 829 (913)
Q Consensus 771 ~~ll~~~~dg~I~i~D~~-------t~~~~~~l~~---h~~~V~--sl~~spdg~-~l~s~s~d--~I~vwdl~ 829 (913)
+.+..+-.| +.||..+ +++.+.++.+ -...|. .|-+-|+|+ ||+..+.+ +..+|...
T Consensus 217 G~LYIaeEd--vaiWK~~Aep~~G~~g~~idr~~d~~~LtdDvEGltiYy~pnGkGYL~aSSQGnNtya~y~Re 288 (364)
T COG4247 217 GFLYIAEED--VAIWKYEAEPNRGNTGRLIDRIKDLSYLTDDVEGLTIYYGPNGKGYLLASSQGNNTYAAYTRE 288 (364)
T ss_pred ceEEEeecc--ceeeecccCCCCCCccchhhhhcCchhhcccccccEEEEcCCCcEEEEEecCCCceEEEEEee
Confidence 445444444 4555432 2334433332 122232 456778888 66666655 66666543
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=92.87 E-value=21 Score=42.26 Aligned_cols=224 Identities=15% Similarity=0.161 Sum_probs=107.2
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEeccC-CCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeeEEee-
Q 002519 684 SPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGH-SASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFK- 758 (913)
Q Consensus 684 spdg~~Lasgs~Dg~V~Iwdl~~~~~-~~~~~~~h-~~~V~sl~fsp~~~~ll~sgs~--Dg~I~iwdl~~~~~~~~~~- 758 (913)
..++..++.+..+|.+....+...+. ......+. .....++++..++..+++.|+. |+.+..|....-+++..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 45677899999999999888875332 12222233 5566778887766345556665 5556666644445555554
Q ss_pred -CCceEEEEecC----CC------EEEEEEc---CCeEEEEECCCCeE--EEEecCC--CCCeEEEEEcC-CCCEEEEEe
Q 002519 759 -GGTAQMRFQPH----LG------RYLAAAA---ENVVSILDAETQAC--RLSLQGH--TKPIDSVCWDP-SGELLASVS 819 (913)
Q Consensus 759 -~~~~~v~~s~~----~~------~ll~~~~---dg~I~i~D~~t~~~--~~~l~~h--~~~V~sl~~sp-dg~~l~s~s 819 (913)
+++..+++... .. .+++++. +|.++++.---+-. ....... -..++.+.... ++.+|+...
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 35555555421 12 6666654 67888774321111 1111111 22344444322 256888887
Q ss_pred CCeEEEEECCCCCCCceEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEE--cccCCCeEEEE
Q 002519 820 EDSVRVWTVGSGSEGECVHEL-----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL--TAHEGLIAALA 892 (913)
Q Consensus 820 ~d~I~vwdl~~~~~~~~i~~~-----~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~ 892 (913)
.+.-+|+.+..++....+.++ ......+.+..+. +..++=.+. ..|++.+....+.... ......|.+.+
T Consensus 379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~ 455 (504)
T PF10433_consen 379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAAS 455 (504)
T ss_dssp SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence 775566666421111222221 1112222222222 333333333 4588888777766632 23444555555
Q ss_pred EeCCCCEEEEEeCCCcEEEe
Q 002519 893 VSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 893 ~spdg~~Lasgs~DG~I~IW 912 (913)
+.. .+++.+-.++.+.++
T Consensus 456 ~~~--~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 456 IND--PQVLVALSGGELVYF 473 (504)
T ss_dssp ESS--SEEEEEE-TTEEEEE
T ss_pred ECC--CEEEEEEeCCcEEEE
Confidence 433 355555556666554
|
... |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.48 E-value=12 Score=42.73 Aligned_cols=79 Identities=20% Similarity=0.223 Sum_probs=48.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcCC--------CCcee---EEe-------c-cCCCCeEEEEEcCCC--CeEEE
Q 002519 677 LITDVRFSPSMPRLATSSFDKTVRVWDADN--------PGYSL---RTF-------M-GHSASVMSLDFHPNK--DDLIC 735 (913)
Q Consensus 677 ~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~--------~~~~~---~~~-------~-~h~~~V~sl~fsp~~--~~ll~ 735 (913)
.|..|..++.|..++-.+.+|.+..+=.+. .++.+ +++ . ...-.+.-++|+|+. +..+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 477788899999999999999654432111 11111 111 1 112235557788875 44444
Q ss_pred EEeCCCcEEEEEcCCCeeeE
Q 002519 736 SCDGDGEIRYWSINNGSCTR 755 (913)
Q Consensus 736 sgs~Dg~I~iwdl~~~~~~~ 755 (913)
.-..|..||+||+...+.+.
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 66678899999887665553
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=92.47 E-value=7.1 Score=43.60 Aligned_cols=40 Identities=3% Similarity=0.006 Sum_probs=21.2
Q ss_pred CeEEEEECCCCcEEEEccc----CCCeEEEEEeCCCCEEEEEeC
Q 002519 866 QSLELWNMSENKTMTLTAH----EGLIAALAVSTETGYVASASH 905 (913)
Q Consensus 866 g~I~iwd~~~~~~~~~~~h----~~~V~~l~~spdg~~Lasgs~ 905 (913)
..|.+||..+.+-..+... .......+...++++++.|+.
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGE 260 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcc
Confidence 4688999888765544321 111111122335667777774
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.38 E-value=23 Score=43.18 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=41.3
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCC--eEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEE
Q 002519 671 LEEHSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 735 (913)
Q Consensus 671 l~~h~~~V~~l~fspdg~~Lasgs~Dg--~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 735 (913)
...+...+..+.|+|++..++..+.++ ...+|-+...+ .+..+...|..+.|++++..+++
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEE
Confidence 445677889999999999998888433 24555554322 33345566777888888877664
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=92.29 E-value=4.3 Score=38.21 Aligned_cols=116 Identities=11% Similarity=0.126 Sum_probs=73.0
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCC-------ceeEEeccCCCCeEEEEEcC----CCCeEEEEEeCCCcEEEEE
Q 002519 679 TDVRFSPSMPRLATSSFDKTVRVWDADNPG-------YSLRTFMGHSASVMSLDFHP----NKDDLICSCDGDGEIRYWS 747 (913)
Q Consensus 679 ~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~-------~~~~~~~~h~~~V~sl~fsp----~~~~ll~sgs~Dg~I~iwd 747 (913)
..-+|......|++++.-|+|.|++..... ..++. ..-...|++|+-.+ ++..+|+.|+ ...|..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~-LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISF-LNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeE-EECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 344666666789999999999999876422 12233 33556778776443 2344665555 67899999
Q ss_pred cCCCeee--EEeeCCceEEEEec---CCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 002519 748 INNGSCT--RVFKGGTAQMRFQP---HLGRYLAAAAENVVSILDAETQACRLSL 796 (913)
Q Consensus 748 l~~~~~~--~~~~~~~~~v~~s~---~~~~ll~~~~dg~I~i~D~~t~~~~~~l 796 (913)
+.....+ +.+..++.++.+-. ....++..+.+..|.-||.+..+..++.
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 9876543 34556666665532 2245666666677777777665555443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.28 E-value=4.9 Score=47.28 Aligned_cols=167 Identities=9% Similarity=-0.072 Sum_probs=78.8
Q ss_pred CeEEEEEeCC-----CcEEEEEcCCCeeeEEe--eCCc-eEEEEecCCCEEEEEEcC--CeEEEEECCCCeEEE--EecC
Q 002519 731 DDLICSCDGD-----GEIRYWSINNGSCTRVF--KGGT-AQMRFQPHLGRYLAAAAE--NVVSILDAETQACRL--SLQG 798 (913)
Q Consensus 731 ~~ll~sgs~D-----g~I~iwdl~~~~~~~~~--~~~~-~~v~~s~~~~~ll~~~~d--g~I~i~D~~t~~~~~--~l~~ 798 (913)
+.++++|+.+ ..+..||..+.+....- .... .......++..+++|+.+ ..+..||..+.+-.. .+..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 4566666654 25777888876543321 1111 111223344555555543 468888877654322 1211
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002519 799 HTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 799 h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 874 (913)
..... +++ .-+|++.+.|+.+ .+..||.++. ....+......... .++..-++...++| |.+.+||..
T Consensus 352 ~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~-~W~~~~~m~~~r~~--~~~~~~~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 352 PRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHD-QWQFGPSTYYPHYK--SCALVFGRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCC-EEEeCCCCCCcccc--ceEEEECCEEEEEC---CceEEecCC
Confidence 11111 222 2357766776643 5778887653 11111111111111 12223345444444 357889988
Q ss_pred CCcEEEEccc--CCCeEEEEEeCCCCEEEEEeCC
Q 002519 875 ENKTMTLTAH--EGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 875 ~~~~~~~~~h--~~~V~~l~~spdg~~Lasgs~D 906 (913)
+++-..+... ...-.+++ .-++++.+.||.+
T Consensus 424 ~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~ 456 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFY 456 (480)
T ss_pred CCcEeEcCCCCCCccccEEE-EECCEEEEECCcC
Confidence 7765533321 11111222 2466777777754
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=92.26 E-value=4.1 Score=48.59 Aligned_cols=163 Identities=16% Similarity=0.149 Sum_probs=92.0
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeEecc-CC------CCeEEEEECCCCCEEEEEeC-C---CeE
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEE-HS------SLITDVRFSPSMPRLATSSF-D---KTV 699 (913)
Q Consensus 633 ~~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~--~~~~l~~-h~------~~V~~l~fspdg~~Lasgs~-D---g~V 699 (913)
.+.|..|.|..+++.+++.-.+|.|.+||...+. .+..+.. +. .-|..........++++.+. + -.+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 6789999999999999999999999999993222 2112221 11 12222222122345544444 2 246
Q ss_pred EEEEcCCCCceeEEec---cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCC-------ceEEEEecC
Q 002519 700 RVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-------TAQMRFQPH 769 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-------~~~v~~s~~ 769 (913)
+++.+......+..+. -+........|+-..+.+..- .+++|.+|++...+..+.+.-. ...+.+.+-
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 7788832222232222 222222333333333434422 6889999999888766655432 123444444
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEec
Q 002519 770 LGRYLAAAAENVVSILDAETQACRLSLQ 797 (913)
Q Consensus 770 ~~~ll~~~~dg~I~i~D~~t~~~~~~l~ 797 (913)
...-+.-+.++.|++.|+.-...+.++.
T Consensus 287 s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 287 SPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 4444445667899999987665555444
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=92.12 E-value=3.4 Score=49.80 Aligned_cols=168 Identities=12% Similarity=0.058 Sum_probs=0.0
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEE
Q 002519 687 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 766 (913)
Q Consensus 687 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~ 766 (913)
..+|+++. .+.|.||+++. ........++..+...|. .+...|+.+..|- ..-.+..+ .+..
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~-----l~~~p~~~p~~~~~t~p~-----~~~~~D~~~s~~p--~PHtIN~i-----~v~~ 110 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDG-----LTQLPSRKPCLRFDTKPE-----FTSTPDRLISTWP--FPHTINFI-----KVGD 110 (717)
T ss_pred CCEEEEEE-CCEEEEEecCC-----cccccccccccccccCcc-----ccccccccccCCC--CCceeeEE-----Eecc
Q ss_pred ecCCCEEEEEEcCCeEEEEEC--------------------CCCeEEEEecCCCCCeEEEEEc--CCCCEEEEEeCC-eE
Q 002519 767 QPHLGRYLAAAAENVVSILDA--------------------ETQACRLSLQGHTKPIDSVCWD--PSGELLASVSED-SV 823 (913)
Q Consensus 767 s~~~~~ll~~~~dg~I~i~D~--------------------~t~~~~~~l~~h~~~V~sl~~s--pdg~~l~s~s~d-~I 823 (913)
.-....|+++..||.|.+|.+ ..-++...+.... .+++++++ ...++||+++.. .|
T Consensus 111 lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~-SaWGLdIh~~~~~rlIAVSsNs~~V 189 (717)
T PF08728_consen 111 LGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGA-SAWGLDIHDYKKSRLIAVSSNSQEV 189 (717)
T ss_pred cCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCC-ceeEEEEEecCcceEEEEecCCceE
Q ss_pred EEEECCCCCCCceEEEeecCCCceEEEEEeCCC------CEEEEEEcCCeEEEEEC
Q 002519 824 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY------PSLLVIGCYQSLELWNM 873 (913)
Q Consensus 824 ~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g------~~l~s~s~dg~I~iwd~ 873 (913)
.||-+...........-..+...|.+++|-++. ..|++++-.|.+.+|++
T Consensus 190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=92.08 E-value=2.6 Score=44.35 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=75.1
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCC-CceEE--EeecCCCceEEEEEeC
Q 002519 782 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSE-GECVH--ELSCNGNKFHSCVFHP 854 (913)
Q Consensus 782 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~-~~~i~--~~~~~~~~i~~l~~sp 854 (913)
-.+||+.+++..-..........+-.|.+||++|.+|+.. .+++|+...... ..... .......+..+...-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 4578888875543222223334445678899999998863 688888654111 11111 1112344556667778
Q ss_pred CCCEEEEEEcCC-eEEEEECCC--CcEEEE--cc------cCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002519 855 TYPSLLVIGCYQ-SLELWNMSE--NKTMTL--TA------HEGLIAALAVSTETGYVASASHDKFVK 910 (913)
Q Consensus 855 ~g~~l~s~s~dg-~I~iwd~~~--~~~~~~--~~------h~~~V~~l~~spdg~~Lasgs~DG~I~ 910 (913)
||+.|++|+... +..+|.-.. .....+ .. ....--.+...|+|++++.+..+..|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 999999998885 566666532 112211 11 111122455679999999988776554
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.02 E-value=1.5 Score=54.96 Aligned_cols=161 Identities=16% Similarity=0.267 Sum_probs=88.2
Q ss_pred eCCCcEEEEECCCCceeeEeccCCCCeEEEEE--------CCCCCEEEEEeCCCeEEEEEcCCCCc--eeE------Eec
Q 002519 652 GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF--------SPSMPRLATSSFDKTVRVWDADNPGY--SLR------TFM 715 (913)
Q Consensus 652 s~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~f--------spdg~~Lasgs~Dg~V~Iwdl~~~~~--~~~------~~~ 715 (913)
+.|+.+.+|+.+++.....+.+-+..|..|.. -|.=++|+....--.|.|+-+.-... ... .+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45889999999998888888888888888764 23334454444455577765532111 111 111
Q ss_pred cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 002519 716 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS 795 (913)
Q Consensus 716 ~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~ 795 (913)
.....|.||....+|+ +|+ ++.||. +|.+--...-..|......++.+.. .-..+. +. +..
T Consensus 176 ~dg~~V~~I~~t~nGR-IF~-~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s--------~ls~lv------Ps-~~~ 236 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGR-IFF-AGRDGN--LYELVYQAEDGWFGSRCRKICLTKS--------VLSSLV------PS-LLS 236 (1311)
T ss_pred cCCceEEEEEeccCCc-EEE-eecCCC--EEEEEEeccCchhhcccccccCchh--------HHHHhh------hh-hhc
Confidence 2345688888655554 553 445664 4443211100001000111111000 000000 00 112
Q ss_pred e-cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002519 796 L-QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 831 (913)
Q Consensus 796 l-~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~ 831 (913)
+ ..+.++|..++++....++++-++. +|.+||+...
T Consensus 237 ~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 237 VPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 2 2467789999999888888888887 9999999764
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=92.01 E-value=30 Score=40.60 Aligned_cols=114 Identities=15% Similarity=0.114 Sum_probs=61.4
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCCCceeEEeccCCC---CeEEEEEcCCCCeEEEEEe-------C-----CCcEEE
Q 002519 681 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA---SVMSLDFHPNKDDLICSCD-------G-----DGEIRY 745 (913)
Q Consensus 681 l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~---~V~sl~fsp~~~~ll~sgs-------~-----Dg~I~i 745 (913)
+.+.++|.+++... ..++.+|+. ++.+..+.-... .=.++.+.|+|+.|+++.. . +..|..
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~--G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ive 228 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL--GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVE 228 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC--CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEE
Confidence 66778888877665 778888886 444444332111 1234677788876665441 0 123555
Q ss_pred EEcCCCeeeEEee------------------------------CCceEEEEecCCCEEEEEEcC-CeEEEEECCCCeEEE
Q 002519 746 WSINNGSCTRVFK------------------------------GGTAQMRFQPHLGRYLAAAAE-NVVSILDAETQACRL 794 (913)
Q Consensus 746 wdl~~~~~~~~~~------------------------------~~~~~v~~s~~~~~ll~~~~d-g~I~i~D~~t~~~~~ 794 (913)
+| .+|+.+..+. .|..++.+.+.++.+++++.. ..|..+|.++++...
T Consensus 229 vd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 229 VD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp E--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred EC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence 55 5555544321 145678888977888888875 489999999998888
Q ss_pred EecCC
Q 002519 795 SLQGH 799 (913)
Q Consensus 795 ~l~~h 799 (913)
.+..+
T Consensus 308 ilg~~ 312 (477)
T PF05935_consen 308 ILGPP 312 (477)
T ss_dssp EES-S
T ss_pred EeCCC
Confidence 77654
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.95 E-value=8.4 Score=47.55 Aligned_cols=130 Identities=9% Similarity=0.028 Sum_probs=74.2
Q ss_pred CCcEEEEEcCC-Ceee---EEeeCCceEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCC
Q 002519 740 DGEIRYWSINN-GSCT---RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGE 813 (913)
Q Consensus 740 Dg~I~iwdl~~-~~~~---~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~--h~~~V~sl~~spdg~ 813 (913)
+|.++.|++-. ++.+ ....-.....+..+..+ .+.++....+++||+-..+.++..+. ....|..+++. +.
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~-~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~ 987 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQG-RVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GA 987 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEEeccCC-EEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ce
Confidence 45566666532 3322 22222333456677767 44556678999999988766554332 34567777774 55
Q ss_pred EEEEEeCC-eEEEEECCCCCCCceEEEee--cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002519 814 LLASVSED-SVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 814 ~l~s~s~d-~I~vwdl~~~~~~~~i~~~~--~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 875 (913)
.|++|... +|.++..+.... .+..+- .-...|+++.+ -|...++.+..-|.+.+..+..
T Consensus 988 RI~VgD~qeSV~~~~y~~~~n--~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 988 RIVVGDIQESVHFVRYRREDN--QLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred EEEEeeccceEEEEEEecCCC--eEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECCC
Confidence 66666554 666665554332 222222 22334555444 3555688888888888876643
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=91.94 E-value=24 Score=39.34 Aligned_cols=62 Identities=6% Similarity=-0.008 Sum_probs=30.1
Q ss_pred CCCEEEEEeCC-CcEEEEECCC----CceeeEecc-CCCCeEEEEECCCCCEEEEEeCC-----------CeEEEEEcCC
Q 002519 644 DGKLLATGGHD-KKAVLWHTDT----LKSKTNLEE-HSSLITDVRFSPSMPRLATSSFD-----------KTVRVWDADN 706 (913)
Q Consensus 644 dg~~Lasgs~D-g~V~vwd~~~----~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~D-----------g~V~Iwdl~~ 706 (913)
++++.++|+.. ..+.++|++. ...+..+.. .......+. -++++.+.|+.+ ..+..||..+
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~--~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~ 94 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA--IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK 94 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEE--ECCEEEEEeCCCCCCCCCcceecccEEEEECCC
Confidence 45555555543 4567777632 222222221 111122222 256677777753 2477788776
Q ss_pred C
Q 002519 707 P 707 (913)
Q Consensus 707 ~ 707 (913)
.
T Consensus 95 ~ 95 (346)
T TIGR03547 95 N 95 (346)
T ss_pred C
Confidence 3
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=91.82 E-value=23 Score=38.84 Aligned_cols=195 Identities=10% Similarity=0.048 Sum_probs=91.4
Q ss_pred CCCCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCce---------------eeEeccCCCCeEEEEECCCC-CEEEEEe
Q 002519 632 STSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKS---------------KTNLEEHSSLITDVRFSPSM-PRLATSS 694 (913)
Q Consensus 632 H~~~V~~l~fspdg~~Lasgs-~Dg~V~vwd~~~~~~---------------~~~l~~h~~~V~~l~fspdg-~~Lasgs 694 (913)
+...|+++...+.-..|++-+ ....++++++..... ....-.|............. ..++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 456899999998777666654 334499999853321 01122344433333333222 2344555
Q ss_pred CCCeEEEEEcCCCCceeEEecc-------CCCCeEEEEEcCC-CCeEEEEEeCCCcEEEEEcCC--CeeeE------Eee
Q 002519 695 FDKTVRVWDADNPGYSLRTFMG-------HSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINN--GSCTR------VFK 758 (913)
Q Consensus 695 ~Dg~V~Iwdl~~~~~~~~~~~~-------h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~iwdl~~--~~~~~------~~~ 758 (913)
...+|.++...........++. ....+..+..+++ .+..++.|+..+...++++.. ..... ...
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~ 200 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE 200 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence 5677777755442211111111 1123333332322 133455665543444555432 11000 000
Q ss_pred C--CceEEEEecCCCEEEEEEcCCeEEEEECCC-CeE-EEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC
Q 002519 759 G--GTAQMRFQPHLGRYLAAAAENVVSILDAET-QAC-RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG 831 (913)
Q Consensus 759 ~--~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t-~~~-~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~ 831 (913)
. ....+...++ +.++.+..+. ..+.|... ... ...+. -.....++++. ..+|++-+.+.|.|+++.++
T Consensus 201 ~~~~p~~i~~l~~-~e~Llc~~~~-~v~Vn~~G~~~~r~~~l~-w~~~p~~~~~~--~pyll~~~~~~ievr~l~~~ 272 (302)
T smart00036 201 TSLKPISVVQVPR-DEFLLCYDEF-GVFVNLYGKRRSRNPILH-WEFMPESFAYH--SPYLLAFHDNGIEIRSIKTG 272 (302)
T ss_pred cccCceEEEEECC-CeEEEEECcE-EEEEeCCCCccccceEEE-cCCcccEEEEE--CCEEEEEcCCcEEEEECCCC
Confidence 0 1112222222 3444444433 44444443 111 11122 23445667776 46777777779999999877
|
Unpublished observations. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=91.62 E-value=9.4 Score=42.26 Aligned_cols=107 Identities=9% Similarity=0.069 Sum_probs=52.0
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCce---eeEecc---CCCCeEEEEECCCCCEEEEEeC-----CCeEEEEEcCCC
Q 002519 644 DGKLLATGGHD-----KKAVLWHTDTLKS---KTNLEE---HSSLITDVRFSPSMPRLATSSF-----DKTVRVWDADNP 707 (913)
Q Consensus 644 dg~~Lasgs~D-----g~V~vwd~~~~~~---~~~l~~---h~~~V~~l~fspdg~~Lasgs~-----Dg~V~Iwdl~~~ 707 (913)
++.+++.|+.+ ..|..||+.+.+- ...+.. ......++.+ ++++.+.|+. ...+.+||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 55677777754 3566777765442 122211 1111122222 4566666664 235888888764
Q ss_pred CceeE-EeccCCCCeEEEEEcCCCCeEEEEEeCCC----cEEEEEcCCCeee
Q 002519 708 GYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYWSINNGSCT 754 (913)
Q Consensus 708 ~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg----~I~iwdl~~~~~~ 754 (913)
..... .+.... .....+..- ++.+++.|+.++ .+.+||+++.+..
T Consensus 150 ~W~~~~~~p~~~-r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 150 EWFELPDFPGEP-RVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CeeECCCCCCCC-CCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 33221 111111 111111112 345666777654 3568898876543
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=91.62 E-value=19 Score=45.50 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=14.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCC
Q 002519 798 GHTKPIDSVCWDPSGELLASVSED 821 (913)
Q Consensus 798 ~h~~~V~sl~~spdg~~l~s~s~d 821 (913)
+|-....++|.+|||.++++-..+
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred cccCCcceEEECCCCcEEEecCCc
Confidence 344566777777777765554433
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.022 Score=63.45 Aligned_cols=141 Identities=21% Similarity=0.304 Sum_probs=95.8
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCCceEEE
Q 002519 762 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHE 839 (913)
Q Consensus 762 ~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d--~I~vwdl~~~~~~~~i~~ 839 (913)
....|.+.+..+++++.+..|..||-...... .+. .......++|+-++..++...+. .+.+||+.+...... +
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~l-e~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL--E 113 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVIL-ELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL--E 113 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcceec-ccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH--h
Confidence 34567777777888888888888886543222 111 23445678898888855554443 899999976422111 1
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-cCCCeEEEEEeCCCCEEEEEeCCCc
Q 002519 840 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-HEGLIAALAVSTETGYVASASHDKF 908 (913)
Q Consensus 840 ~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-h~~~V~~l~~spdg~~Lasgs~DG~ 908 (913)
+.+ ...-.-+.|++.+..++.+...|.+.||+..+.+.+...+ |...+.+++|.+.+ +++.++.|..
T Consensus 114 ~gg-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 114 SGG-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred ccC-cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHH
Confidence 111 1111226799999999999999999999999888776555 99999999999887 4555555543
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=91.57 E-value=8.5 Score=44.44 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=27.4
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECC-------CCceeeEe-ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcC
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~-------~~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 705 (913)
....+..|...|.-+++ .|..++||+.. .+.....+ .++...+.+ .+++....|.|+.|+--
T Consensus 27 ~~~~~gi~~e~g~Aw~~--~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~--------v~lv~p~~G~v~f~~~I 96 (422)
T PF08801_consen 27 SPCSMGIFPEIGRAWIV--VDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPG--------VGLVKPKTGRVVFWESI 96 (422)
T ss_dssp TS-EEEEE-TTSEEEEE--ETTEEEEEE--SS--GG--EEEEE-----------S--------EEEEE-TT-EEEEES-T
T ss_pred cceEEEEEcccCEEEEE--ECCEEEEEeccCCCCCcCcccccceecCCCCCCCce--------EEEEEcCCCCEEecccc
Confidence 34555556555644444 37899999984 23322233 333333333 34555668889999754
Q ss_pred C
Q 002519 706 N 706 (913)
Q Consensus 706 ~ 706 (913)
.
T Consensus 97 ~ 97 (422)
T PF08801_consen 97 S 97 (422)
T ss_dssp T
T ss_pred h
Confidence 3
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Probab=91.47 E-value=47 Score=41.71 Aligned_cols=255 Identities=10% Similarity=0.051 Sum_probs=123.9
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCce---------eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc---CCC
Q 002519 640 HFSSDGKLLATGGHDKKAVLWHTDTLKS---------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA---DNP 707 (913)
Q Consensus 640 ~fspdg~~Lasgs~Dg~V~vwd~~~~~~---------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl---~~~ 707 (913)
.+-++...+++-+.+|.|+--++.+... ...++.. ..+..+........|+..+..|.+....+ ...
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~-D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~ 571 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKED-DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA 571 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCC-CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence 3445677888888999998876654321 1112222 34444444455556666666777665544 321
Q ss_pred -----Ccee---EEeccCCCCeEEEEEcCC-CCeEEEEEeCCCcEEEEEcCCCe-------eeEEeeCC--ceEEEEecC
Q 002519 708 -----GYSL---RTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGS-------CTRVFKGG--TAQMRFQPH 769 (913)
Q Consensus 708 -----~~~~---~~~~~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~iwdl~~~~-------~~~~~~~~--~~~v~~s~~ 769 (913)
+..+ ..+.....-|.++.+... ....++..+.+|.|+.-++.... ....++.+ ...+.....
T Consensus 572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~ 651 (805)
T PRK05560 572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDG 651 (805)
T ss_pred CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCC
Confidence 1111 112222233444444421 23345588889999887765322 11122221 122233334
Q ss_pred CCEEEEEEcCCeEEEEECCC---------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC------CC
Q 002519 770 LGRYLAAAAENVVSILDAET---------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG------SE 833 (913)
Q Consensus 770 ~~~ll~~~~dg~I~i~D~~t---------~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d-~I~vwdl~~~------~~ 833 (913)
...+++.+..|.+..+.+.. |.....+...+.-+..+.+.+++.+++..+.. .++...+... ..
T Consensus 652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k 731 (805)
T PRK05560 652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK 731 (805)
T ss_pred CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC
Confidence 45677777778766665432 12222332222223334444443345555554 6666554211 11
Q ss_pred CceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCC
Q 002519 834 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTET 897 (913)
Q Consensus 834 ~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg 897 (913)
......+......+..+........+++.+.+|.+..++...-. ........|..+.+..++
T Consensus 732 G~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~--~~gR~a~GVk~I~L~~~D 793 (805)
T PRK05560 732 GVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEIS--ITGRNTQGVRLIRLDEGD 793 (805)
T ss_pred cEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCC--ccccCCCCeeeEecCCCC
Confidence 22222232223344444333444557777888877777765322 122234456666664443
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.38 E-value=2.4 Score=47.95 Aligned_cols=126 Identities=14% Similarity=0.095 Sum_probs=83.1
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC--------CEEEEEeCCeEEEEECCCCCCCceEEEeec--CCCce
Q 002519 778 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG--------ELLASVSEDSVRVWTVGSGSEGECVHELSC--NGNKF 847 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg--------~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~--~~~~i 847 (913)
....++-.|++.|+.+.+...|... -+.|.|+. ..|+..+...|.-.|.+-......+...+. ..+.+
T Consensus 488 ~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~F 565 (776)
T COG5167 488 ERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKF 565 (776)
T ss_pred CcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccc
Confidence 3567888899999999888877665 46777753 345555555666666654432222222221 12223
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEeCC
Q 002519 848 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 906 (913)
Q Consensus 848 ~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~D 906 (913)
.+..- ....+|++++..|-|++||.-..... .+.+....|..+..+.+|++|++.|..
T Consensus 566 ss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 566 SSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 33333 34458999999999999996554433 677888899999999999988776654
|
|
| >KOG2109 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.51 Score=54.76 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=54.1
Q ss_pred ccceeeeEeecCCCCEEEEEEecCCCEEEEEeCCC-cEEEEECCCCcee-----eEeccC-----CCCeEEEEECCCCCE
Q 002519 621 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKSK-----TNLEEH-----SSLITDVRFSPSMPR 689 (913)
Q Consensus 621 ~~~~~~~~l~~H~~~V~~l~fspdg~~Lasgs~Dg-~V~vwd~~~~~~~-----~~l~~h-----~~~V~~l~fspdg~~ 689 (913)
.+++.+..|+.|..+|..++|.+.|.+|++++..| .|.++.+..-.+. ..+..| ...|-.|+|+....+
T Consensus 303 ~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~~ 382 (788)
T KOG2109|consen 303 DSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVSTI 382 (788)
T ss_pred cchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhhcce
Confidence 36778888999999999999999999999988665 4666654321111 111111 233556788888888
Q ss_pred EEEEeCCCe
Q 002519 690 LATSSFDKT 698 (913)
Q Consensus 690 Lasgs~Dg~ 698 (913)
++.++.+|+
T Consensus 383 r~~gsc~Ge 391 (788)
T KOG2109|consen 383 RTAGSCEGE 391 (788)
T ss_pred EeecccCCC
Confidence 888887764
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.80 E-value=6.2 Score=50.36 Aligned_cols=227 Identities=11% Similarity=0.032 Sum_probs=105.7
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCC-CCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 712 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 712 (913)
.....++|++.-.++|.++.+|.|++|-..--+.+.....-. ..+..+.|-.....+.....+..+.+|.....+.+
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-- 113 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV-- 113 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee--
Confidence 456678999999999999999999999765333222221111 12222222222223334444555666665432111
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----eCCce-EEEEecCCCEEEEEEcCCeEEEEEC
Q 002519 713 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTA-QMRFQPHLGRYLAAAAENVVSILDA 787 (913)
Q Consensus 713 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~-~v~~s~~~~~ll~~~~dg~I~i~D~ 787 (913)
+ +...+++.... ..-.++.+ ..+.+++||+.-....... ..... ...+.+..-.+..--.+-...++-+
T Consensus 114 -~--~~~~~~~~~~~--~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 187 (993)
T KOG1983|consen 114 -F--LKQEITSFVTD--PPPDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISL 187 (993)
T ss_pred -e--cCCcceeccCC--CCcchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeec
Confidence 1 12223332222 22122344 7788888887543221111 00000 0001100000000000000011111
Q ss_pred CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 002519 788 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 867 (913)
Q Consensus 788 ~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~ 867 (913)
.... ..+..+..++.+..+......+..+....+.+|+...... .+.+. +....+..++..++++..||.
T Consensus 188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~v~~h~Dgs 257 (993)
T KOG1983|consen 188 PDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYV---QSAYL-----PNGQLESRDGSHFVSYHTDGS 257 (993)
T ss_pred cccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccccc---hhhcc-----cccccCccCCceEEEEEecCC
Confidence 0000 1222344555565555555555555555666666543211 11111 111122778999999999999
Q ss_pred EEEEECCCCcE
Q 002519 868 LELWNMSENKT 878 (913)
Q Consensus 868 I~iwd~~~~~~ 878 (913)
+.+||+..++.
T Consensus 258 ~~fWd~s~g~~ 268 (993)
T KOG1983|consen 258 YAFWDVSSGKL 268 (993)
T ss_pred EEeeecCCCce
Confidence 99999998754
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=90.52 E-value=28 Score=37.54 Aligned_cols=192 Identities=9% Similarity=0.110 Sum_probs=101.5
Q ss_pred CeEEEEEcCCCCeEEEEEeCCCcEEEEEcC------CC-eeeEEee--------CCceEEEEecCC------------CE
Q 002519 720 SVMSLDFHPNKDDLICSCDGDGEIRYWSIN------NG-SCTRVFK--------GGTAQMRFQPHL------------GR 772 (913)
Q Consensus 720 ~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~------~~-~~~~~~~--------~~~~~v~~s~~~------------~~ 772 (913)
.-+.|+|+|.+. +.++...-+...+||.. .. ..+-.+. ...+-+.|+... ..
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 356799999765 44466677889999986 11 2222332 122334444222 34
Q ss_pred EEEEEcCCeEEEEECCCCe-----EEEEecC-CCC-CeEEEEEcCC--CCEEEEEeCC--eEEEEECCCCCCCceEEEe-
Q 002519 773 YLAAAAENVVSILDAETQA-----CRLSLQG-HTK-PIDSVCWDPS--GELLASVSED--SVRVWTVGSGSEGECVHEL- 840 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t~~-----~~~~l~~-h~~-~V~sl~~spd--g~~l~s~s~d--~I~vwdl~~~~~~~~i~~~- 840 (913)
++.+++||+|.-|...-.. ....+.. ... ....+++... +.+|+.+.-. +|.|||-.-.... .-..+
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~-~~g~F~ 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP-LPGSFI 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc-CCCCcc
Confidence 7888999999999753221 1122221 112 2345666543 5566666544 8999985422100 00000
Q ss_pred ----ecCCC-----------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc--ccCCCeEEEEEeC------CC
Q 002519 841 ----SCNGN-----------KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT--AHEGLIAALAVST------ET 897 (913)
Q Consensus 841 ----~~~~~-----------~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~--~h~~~V~~l~~sp------dg 897 (913)
..... .|+-..-.++...=+.+..-|.|.+||....-+.++. +.-..-+.|+..| .+
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 00000 0111111222323333444568999998766555442 3334556777755 34
Q ss_pred CEEEEEeCCCcEEEeC
Q 002519 898 GYVASASHDKFVKLWK 913 (913)
Q Consensus 898 ~~Lasgs~DG~I~IWd 913 (913)
.+|+.=--||+|.+||
T Consensus 262 ~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 262 ALLVGNFGDGTINAYD 277 (336)
T ss_pred CeEEeecCCceeEEec
Confidence 5555444599999987
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.21 E-value=34 Score=37.95 Aligned_cols=140 Identities=17% Similarity=0.247 Sum_probs=82.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCe------EEEEEcCCCC---cee-----EEeccCCC--------CeEEEEEcCCCCeE
Q 002519 676 SLITDVRFSPSMPRLATSSFDKT------VRVWDADNPG---YSL-----RTFMGHSA--------SVMSLDFHPNKDDL 733 (913)
Q Consensus 676 ~~V~~l~fspdg~~Lasgs~Dg~------V~Iwdl~~~~---~~~-----~~~~~h~~--------~V~sl~fsp~~~~l 733 (913)
+.+..|.+.+++..+++.+++|. +..+++.... ..+ ..+....+ ...+|++.+++. +
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~-~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS-F 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-E
Confidence 55788888876677777787777 6555554311 011 11111111 345788855554 5
Q ss_pred EEEEeCC------CcEEEEEcCCCeeeEEe------------------eCCceEEEEecCCCEEEEEEc-----CC----
Q 002519 734 ICSCDGD------GEIRYWSINNGSCTRVF------------------KGGTAQMRFQPHLGRYLAAAA-----EN---- 780 (913)
Q Consensus 734 l~sgs~D------g~I~iwdl~~~~~~~~~------------------~~~~~~v~~s~~~~~ll~~~~-----dg---- 780 (913)
+++.-.+ ..|+.++.. ++....+ ..+...+++++++..++++.. |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 5466556 678888866 5544333 123456899999997777654 22
Q ss_pred -------eEEEEECCC-C----eEEEEecC-----CCCCeEEEEEcCCCCEEEE
Q 002519 781 -------VVSILDAET-Q----ACRLSLQG-----HTKPIDSVCWDPSGELLAS 817 (913)
Q Consensus 781 -------~I~i~D~~t-~----~~~~~l~~-----h~~~V~sl~~spdg~~l~s 817 (913)
.|..||..+ + ...+.+.. ....|..+.+.+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 234456554 2 22333332 3467889999999997764
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.15 E-value=53 Score=40.05 Aligned_cols=61 Identities=26% Similarity=0.267 Sum_probs=42.6
Q ss_pred eecCCCCEEEEEEecCCCEEEEEeCCCc--EEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEE
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKK--AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 692 (913)
Q Consensus 629 l~~H~~~V~~l~fspdg~~Lasgs~Dg~--V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Las 692 (913)
...+...+.++.|+|+|.+++..+.++. ..+|-+.... .+..+...|....|++++..++.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEE
Confidence 4456778999999999999998874432 3344333221 44456667888999999988776
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.99 E-value=3.2 Score=47.23 Aligned_cols=28 Identities=21% Similarity=0.650 Sum_probs=14.4
Q ss_pred eEEEEEcCCC---CEEEEEeCC-eEEEEECCC
Q 002519 803 IDSVCWDPSG---ELLASVSED-SVRVWTVGS 830 (913)
Q Consensus 803 V~sl~~spdg---~~l~s~s~d-~I~vwdl~~ 830 (913)
+..++|+|+. ..|..-+.| .|||||+..
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCC
Confidence 4455666644 233333344 666666643
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=89.60 E-value=5.6 Score=46.91 Aligned_cols=176 Identities=15% Similarity=0.171 Sum_probs=94.4
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 713 (913)
Q Consensus 634 ~~V~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~ 713 (913)
..+++|.-+|.|..++.+..||.|++|++...+..+... ...+-..+.|...| |++...|..+.-|.-+ +.....
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d--gvvqqq 89 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKED--GVVQQQ 89 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeecc--Ccchhh
Confidence 457778888999999999999999999987544322222 22333455565443 6666678777778654 222222
Q ss_pred ec---cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC--CCeeeEEeeCCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002519 714 FM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN--NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE 788 (913)
Q Consensus 714 ~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~--~~~~~~~~~~~~~~v~~s~~~~~ll~~~~dg~I~i~D~~ 788 (913)
|. .......++...|...+++ |.--|.|.-+|.- .+-....| -++...-..|.+-|+.
T Consensus 90 fdyndqsekefss~~cdptaqnvv--gtlcggv~q~dcclrr~i~knkf---------------e~tyv~pshvilkdls 152 (1636)
T KOG3616|consen 90 FDYNDQSEKEFSSILCDPTAQNVV--GTLCGGVEQFDCCLRRGILKNKF---------------ELTYVAPSHVILKDLS 152 (1636)
T ss_pred ccccchhhhhccceecCchhhhhh--hhhccceeeehHHHHhHHHhccc---------------eeEEeccceeeeeccc
Confidence 21 1122334455555544433 3334555555531 11111111 1111122344555555
Q ss_pred CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC
Q 002519 789 TQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG 831 (913)
Q Consensus 789 t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~ 831 (913)
++.....+....-.|..+.+.-..+|++.-...+|.|=|+.+.
T Consensus 153 n~trt~l~s~~g~aidelkilgkdryli~~ts~siii~d~es~ 195 (1636)
T KOG3616|consen 153 NDTRTNLISHKGLAIDELKILGKDRYLIAHTSESIIIADLESN 195 (1636)
T ss_pred CCceEeeeecCCcchhhhhhccccceEEeeccccEEEeecccc
Confidence 5544433332233455566665666777666668888888654
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=89.50 E-value=9.6 Score=35.96 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=67.6
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCc--------eeeEeccCCCCeEEEEE---CC--CCCEEEEEeCCCeEEEEE
Q 002519 637 ICCHFSSDGKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHSSLITDVRF---SP--SMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 637 ~~l~fspdg~~Lasgs~Dg~V~vwd~~~~~--------~~~~l~~h~~~V~~l~f---sp--dg~~Lasgs~Dg~V~Iwd 703 (913)
..-.|......|++++..|+|.|++..... .+..+ .-...|++|+- .+ +...|+.|+ ...|.+||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 344566666788899999999999876322 22223 34556777754 32 233566665 55699999
Q ss_pred cCCCCceeEEeccCCCCeEEEEEcC---CCCeEEEEEeCCCcEEEEEcCCCeee
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIRYWSINNGSCT 754 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~V~sl~fsp---~~~~ll~sgs~Dg~I~iwdl~~~~~~ 754 (913)
+++... ..++.-.+.|.+|.+-. ....++++| .+..|.-||.+..+..
T Consensus 80 V~~N~d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 80 VENNSD--LFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIF 130 (136)
T ss_pred cccCch--hhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEE
Confidence 987332 23344556777777632 123355444 4667777776654443
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=89.32 E-value=45 Score=38.07 Aligned_cols=108 Identities=13% Similarity=-0.004 Sum_probs=59.2
Q ss_pred CceEEEEecCCCEEEEEEcCCeEEEEECCCCe-----EEEEecC--CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCC
Q 002519 760 GTAQMRFQPHLGRYLAAAAENVVSILDAETQA-----CRLSLQG--HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS 832 (913)
Q Consensus 760 ~~~~v~~s~~~~~ll~~~~dg~I~i~D~~t~~-----~~~~l~~--h~~~V~sl~~spdg~~l~s~s~d~I~vwdl~~~~ 832 (913)
....+.+.+++..+++ +..|.+..- ...++ ....+.. -...+.++.|.+++..+++|..+.+.+. ...++
T Consensus 282 ~l~~v~~~~dg~l~l~-g~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~ 358 (398)
T PLN00033 282 RIQNMGWRADGGLWLL-TRGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGK 358 (398)
T ss_pred ceeeeeEcCCCCEEEE-eCCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCc
Confidence 3456677777665554 455655433 22222 1222221 1235889999999888888877744333 33333
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002519 833 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 871 (913)
Q Consensus 833 ~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iw 871 (913)
..........-...++.+.|.++++ .++.+.+|.|.-|
T Consensus 359 tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 359 SWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred ceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 3233222222234577888876654 6666777776554
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.24 E-value=56 Score=39.04 Aligned_cols=247 Identities=13% Similarity=0.013 Sum_probs=0.0
Q ss_pred EEEEEEecCCCEEEEEeCCC-----cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCe-----EEEEEcC
Q 002519 636 VICCHFSSDGKLLATGGHDK-----KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT-----VRVWDAD 705 (913)
Q Consensus 636 V~~l~fspdg~~Lasgs~Dg-----~V~vwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~-----V~Iwdl~ 705 (913)
+-.++.|||.++||.+-... +++|.|+.++...-.. -.+....++|..|++.|+....|.. |....+.
T Consensus 131 Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~--i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~g 208 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDE--ITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLG 208 (682)
T ss_pred eeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchh--hcccccceEEecCCCeEEEEEEcCCCCcceEEEEecC
Q ss_pred C--CCceeEEeccCCCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCC----eeeEEeeCCceEEEEecCCCEEEEEE
Q 002519 706 N--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNG----SCTRVFKGGTAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 706 ~--~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~--Dg~I~iwdl~~~----~~~~~~~~~~~~v~~s~~~~~ll~~~ 777 (913)
+ ....+..-........+|.-+.....+++.+++ .+.|++.+.... +++..-..++.--.-+.....++...
T Consensus 209 t~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN 288 (682)
T COG1770 209 TPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSN 288 (682)
T ss_pred CCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEec
Q ss_pred cCC-eEEEEECCC---CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCCceEEEeecCCCceEE
Q 002519 778 AEN-VVSILDAET---QACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHS 849 (913)
Q Consensus 778 ~dg-~I~i~D~~t---~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~d----~I~vwdl~~~~~~~~i~~~~~~~~~i~~ 849 (913)
.+| ..+|+.... ...-..+..|...+.--.|+--..+|+....+ .|++++..++.... +..-+.....-..
T Consensus 289 ~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~-i~f~~~ay~~~l~ 367 (682)
T COG1770 289 ADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERG-IAFDDEAYSAGLS 367 (682)
T ss_pred CCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceee-EEecchhhhcccc
Q ss_pred EEEeCCCCEEEEEEcCC----eEEEEECCCCcEEEEcccC
Q 002519 850 CVFHPTYPSLLVIGCYQ----SLELWNMSENKTMTLTAHE 885 (913)
Q Consensus 850 l~~sp~g~~l~s~s~dg----~I~iwd~~~~~~~~~~~h~ 885 (913)
..-.++...|-..-..- ++.=+|+.+++...++...
T Consensus 368 ~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~Lkqqe 407 (682)
T COG1770 368 GNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQE 407 (682)
T ss_pred CCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEecc
|
|
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.19 E-value=75 Score=40.42 Aligned_cols=261 Identities=8% Similarity=-0.026 Sum_probs=0.0
Q ss_pred EEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEEcCC-----CCceeEEeccCCCC
Q 002519 648 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDADN-----PGYSLRTFMGHSAS 720 (913)
Q Consensus 648 Lasgs~Dg~V~vwd~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~Iwdl~~-----~~~~~~~~~~h~~~ 720 (913)
++.++......+............-+...-..--.|+. ..+-+++....+.++|--+.. .+++++.+. -...
T Consensus 877 vfv~Gs~P~~il~t~rg~lr~h~~~gngpv~sfapfhnvn~p~gfiyvd~~~~l~i~~lp~~~~Ydn~wPvkkIp-l~~T 955 (1366)
T KOG1896|consen 877 VFVTGSKPYLILLTFRGVLRFHPVFGNGPVGSFAPFHNVNCPRGFIYVDRQGELVICVLPEALSYDNKWPVKKIP-LRKT 955 (1366)
T ss_pred EEEecCCceEEEEEcccccceeeeecCCcceeeeeeeccCCCcceEEECCCceEEEEEcchhcccCCCCcccccc-cccc
Q ss_pred eEEEEEcCCCCeEEEEE----------------------------eCCCcEEEEEcCCCeeeEEeeCCceEEEEecCC--
Q 002519 721 VMSLDFHPNKDDLICSC----------------------------DGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL-- 770 (913)
Q Consensus 721 V~sl~fsp~~~~ll~sg----------------------------s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s~~~-- 770 (913)
...+.+++..+.+.+.. +....|.+.+.++.+.+..++-......++-.-
T Consensus 956 ~~~vvYh~e~~vy~v~t~~~~~~~~~~~d~~e~~~~~de~~~~p~~~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~ 1035 (1366)
T KOG1896|consen 956 PHQVVYHYEKKVYAVITSTPVPYERLGEDGEEEVISRDENVIHPEGEQFSIQLISPESWEVIDKIEFQENEHVLHMKYVI 1035 (1366)
T ss_pred hhheeeeccceEEEEEEeccceeeecccccccccccccccccccccccceeEEecCCccccccccccCccceeeEEEEEE
Q ss_pred -----------CEEEEEEc---------CCeEEEEEC----------CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002519 771 -----------GRYLAAAA---------ENVVSILDA----------ETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 820 (913)
Q Consensus 771 -----------~~ll~~~~---------dg~I~i~D~----------~t~~~~~~l~~h~~~V~sl~~spdg~~l~s~s~ 820 (913)
.++++|.. -|.++|||+ .+...++.+...+-.=+-.+.+.-.-+|+++..
T Consensus 1036 L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~G 1115 (1366)
T KOG1896|consen 1036 LDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQG 1115 (1366)
T ss_pred EEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEccC
Q ss_pred CeEEEEECCCCCCCceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----EEcccCCCeEEEEEeCC
Q 002519 821 DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----TLTAHEGLIAALAVSTE 896 (913)
Q Consensus 821 d~I~vwdl~~~~~~~~i~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~----~~~~h~~~V~~l~~spd 896 (913)
-.|.||++........+..+ .-.+......--.++|++|.-...|.+.-+.+.... ......-.+.++.|--+
T Consensus 1116 qKI~v~~l~r~~~ligVaFi---D~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVd 1192 (1366)
T KOG1896|consen 1116 QKIIVRKLDRDSELIGVAFI---DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVD 1192 (1366)
T ss_pred cEEEEEEeccCCcceeeEEe---ccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEc
Q ss_pred CC--EEEEEeCCCcEEEe
Q 002519 897 TG--YVASASHDKFVKLW 912 (913)
Q Consensus 897 g~--~Lasgs~DG~I~IW 912 (913)
|. .++++..|+.|++|
T Consensus 1193 g~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1193 GSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred CCeeEEEEEcCCCcEEEE
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 913 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-27 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 7e-20 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-07 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 8e-20 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 9e-20 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 4e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 9e-20 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 4e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 9e-20 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 4e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 9e-20 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 4e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-19 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-19 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-19 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-19 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-19 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-19 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-07 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-19 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-19 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 8e-06 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 5e-19 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 7e-06 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 7e-18 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 3e-17 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 4e-17 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 5e-17 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 7e-17 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 5e-16 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-14 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-07 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 4e-14 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 5e-14 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 5e-14 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 4e-06 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 6e-14 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 3e-04 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 9e-14 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 3e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 9e-14 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 3e-04 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-13 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 6e-08 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 5e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 4e-13 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 9e-08 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 6e-04 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-11 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 2e-11 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-11 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 4e-09 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-11 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-11 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 2e-11 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-11 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-11 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-10 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-06 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 2e-10 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 1e-05 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 2e-09 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 6e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-09 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 6e-04 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 2e-09 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 7e-04 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-09 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 6e-04 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 2e-09 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 9e-04 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 3e-09 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 2e-08 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 3e-09 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 5e-07 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 4e-09 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-07 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 4e-09 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-07 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 4e-09 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-07 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 3e-08 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-06 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 4e-08 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 3e-05 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 5e-08 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 5e-08 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 6e-04 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 8e-08 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 4e-06 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 9e-08 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 1e-07 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 2e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 4e-07 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 6e-07 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 6e-07 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 1e-06 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-06 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-06 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 6e-06 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 2e-04 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 8e-06 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 2e-05 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 3e-05 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 3e-05 | ||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 7e-05 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 2e-04 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 2e-04 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 9e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 913 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-35 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-33 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-22 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-21 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-27 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-16 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-23 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-17 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-20 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-10 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 7e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-19 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-16 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-18 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-15 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-17 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-12 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.003 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-16 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-16 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-16 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 9e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-16 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-15 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-14 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-14 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-13 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-12 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-12 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-12 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-12 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-11 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-10 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 8e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 6e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-06 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 6e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-04 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 6e-04 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 0.002 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-09 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-07 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 2e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 2e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 2e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 1e-07 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 7e-07 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 9e-08 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.003 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 2e-06 | |
| d1od5a1 | 245 | b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea | 2e-06 | |
| d1od5a1 | 245 | b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea | 0.004 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 6e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.004 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 4e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-04 | |
| g1pnb.1 | 106 | a.52.1.3 (A:,B:) Napin BNIb {Rape (Brassica napus) | 4e-04 | |
| d1fxza1 | 239 | b.82.1.2 (A:10-248) Seed storage 7S protein {Soybe | 6e-04 | |
| d1bf5a1 | 181 | a.47.1.1 (A:136-316) STAT-1, coiled coil domain {H | 0.002 | |
| d1bf5a1 | 181 | a.47.1.1 (A:136-316) STAT-1, coiled coil domain {H | 0.002 | |
| d2crua1 | 105 | a.5.6.1 (A:8-112) Programmed cell death protein 5 | 0.002 | |
| d1psya_ | 125 | a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricin | 0.002 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 134 bits (337), Expect = 5e-35
Identities = 59/340 (17%), Positives = 122/340 (35%), Gaps = 11/340 (3%)
Query: 578 ELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVI 637
+LR + ++L + D ++ D V + + ++R +K+
Sbjct: 6 QLRQEAEQLKN--QIRDARKA---CADATLSQITNNIDPVGR-IQMRTRRTLRGHLAKIY 59
Query: 638 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 697
H+ +D +LL + D K ++W + T + SS + ++PS +A D
Sbjct: 60 AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 119
Query: 698 TVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 754
+++ + R GH+ + F + + S D + + T
Sbjct: 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 179
Query: 755 RVFKGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE 813
G R + + + D CR + GH I+++C+ P+G
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239
Query: 814 LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 873
A+ S+D+ + + S F + LL + +W+
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 874 -SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912
++ L H+ ++ L V+ + VA+ S D F+K+W
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.4 bits (181), Expect = 9e-15
Identities = 15/70 (21%), Positives = 29/70 (41%)
Query: 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 693
+ FS G+LL G D +W L H + ++ + + +AT
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 694 SFDKTVRVWD 703
S+D +++W+
Sbjct: 331 SWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 73.6 bits (179), Expect = 2e-14
Identities = 36/221 (16%), Positives = 68/221 (30%), Gaps = 43/221 (19%)
Query: 653 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 712
D LW +T + T H+ + + +P + + D + ++WD G +
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQ 220
Query: 713 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGR 772
TF GH + + ++ F PN + + D R + +
Sbjct: 221 TFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQEL------------------ 261
Query: 773 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 831
S I SV + SG LL + +D + VW
Sbjct: 262 -------------------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 832 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 872
+ L+ + N+ ++ L++WN
Sbjct: 303 ---DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.6 bits (96), Expect = 3e-04
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 661
A + ++V C + DG +ATG D +W+
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 127 bits (319), Expect = 9e-33
Identities = 74/315 (23%), Positives = 125/315 (39%), Gaps = 30/315 (9%)
Query: 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 683
E ++ S V F ++ + D +W +T + L+ H+ + D+ F
Sbjct: 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67
Query: 684 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 743
S LA+ S D T+++WD RT GH +V S+ PN D I S D I
Sbjct: 68 DHSGKLLASCSADMTIKLWDFQGFECI-RTMHGHDHNVSSVSIMPN-GDHIVSASRDKTI 125
Query: 744 RYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 800
+ W + G C + F G +R + + + V + T+ C+ L+ H
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185
Query: 801 KPIDSVCW--------------------DPSGELLASVSED-SVRVWTVGSGSEGECVHE 839
++ + W G L S S D ++++W S G C+
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW---DVSTGMCLMT 242
Query: 840 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG 898
L + N +FH +L ++L +W+ + M TL AHE + +L
Sbjct: 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 302
Query: 899 YVASASHDKFVKLWK 913
YV + S D+ VK+W+
Sbjct: 303 YVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 96.0 bits (237), Expect = 4e-22
Identities = 43/226 (19%), Positives = 72/226 (31%), Gaps = 62/226 (27%)
Query: 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 681
+ + V + DG L+A+ +D+ +W T + K L EH ++ +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 682 RF--------------------SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV 721
+ P L + S DKT+++WD G L T +GH V
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV 250
Query: 722 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 781
+ FH I SC D +R W N C +
Sbjct: 251 RGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLN----------------------- 286
Query: 782 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 826
H + S+ + + + + S D +V+VW
Sbjct: 287 ----------------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.8 bits (234), Expect = 1e-21
Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 3/164 (1%)
Query: 584 DRLVEDGSLDDNVESFLSHDDTDPRD-AGGRGMDVSQGFSFKEANSVRASTSKVICCHFS 642
L+ S D V ++ + R + ++ + + S + +
Sbjct: 155 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214
Query: 643 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 702
G L +G DK +W T L H + + V F + + + DKT+RVW
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274
Query: 703 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 746
D N ++T H V SLDFH + + D ++ W
Sbjct: 275 DYKN-KRCMKTLNAHEHFVTSLDFHKT-APYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.3 bits (186), Expect = 1e-15
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 681
+ ++ + V F S GK + + DK +W + L H +T +
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295
Query: 682 RFSPSMPRLATSSFDKTVRVWD 703
F + P + T S D+TV+VW+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.5 bits (93), Expect = 7e-04
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 869 ELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912
+ W + L+ H + + + SAS D +K+W
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 44
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 112 bits (280), Expect = 4e-27
Identities = 72/324 (22%), Positives = 115/324 (35%), Gaps = 44/324 (13%)
Query: 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE------------------H 674
TS V C FS+DG+ LATG +K ++ L +
Sbjct: 62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120
Query: 675 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLI 734
I V FSP LAT + D+ +R+WD +N + F +
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180
Query: 735 CSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACR 793
S D I S T + G + P G+Y+AA + V + D+ET
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240
Query: 794 LSLQ-------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE---------GEC 836
L GH + SV + G+ + S S D SV++W + + + G C
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300
Query: 837 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM-SENKTMTLTAHEGLIAALAVST 895
+ + S +L + + W+ S N + L H + ++AV+
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360
Query: 896 ------ETGYVASASHDKFVKLWK 913
E A+ S D ++WK
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.2 bits (201), Expect = 4e-17
Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 53/210 (25%)
Query: 638 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSMPRL 690
DGK +A G D+ +W ++T L+ H + V F+ +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269
Query: 691 ATSSFDKTVRVWDADNPG-----------YSLRTFMGHSASVMSLDFHPNKDDLICSCDG 739
+ S D++V++W+ N T++GH V+S+ N D+ I S
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSK 328
Query: 740 DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH 799
D + +W +G+ + +G H ++ A N
Sbjct: 329 DRGVLFWDKKSGNPLLMLQG---------HRNSVISVAVAN------------------- 360
Query: 800 TKPIDSVCWDPSGELLASVSED-SVRVWTV 828
P + A+ S D R+W
Sbjct: 361 -----GSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.6 bits (197), Expect = 1e-16
Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 18/141 (12%)
Query: 625 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE----------- 673
E S V F+ DG+ + +G D+ LW+ +K++ +
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305
Query: 674 -HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--- 729
H + V + + + + S D+ V WD + G L GH SV+S+
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS-GNPLLMLQGHRNSVISVAVANGSSL 364
Query: 730 --KDDLICSCDGDGEIRYWSI 748
+ ++ + GD + R W
Sbjct: 365 GPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.2 bits (144), Expect = 5e-10
Identities = 36/232 (15%), Positives = 79/232 (34%), Gaps = 27/232 (11%)
Query: 684 SPSMPRLATSSFDKTVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGD 740
S S+P + +++ P L + H++ V + F + + L C+
Sbjct: 25 SQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKT 84
Query: 741 GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 800
+ + +++GS +A + +L S
Sbjct: 85 --TQVYRVSDGSLVARLSDDSAANKDPENL---------------------NTSSSPSSD 121
Query: 801 KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 860
I SVC+ P G+ LA+ +ED + + + + + + F +
Sbjct: 122 LYIRSVCFSPDGKFLATGAEDRL-IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180
Query: 861 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912
G + ++TL+ +G+ + Y+A+ S D+ V++W
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 232
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (250), Expect = 1e-23
Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 18/295 (6%)
Query: 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 681
K ++ VI C G + +G D +W T K L H+ +
Sbjct: 5 ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 63
Query: 682 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 741
+ ++ + + ++ + + S D
Sbjct: 64 QMRDNII------ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 742 EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQGHT 800
+R W I G C V G A +R + GR + + A +V + D ET+ C +LQGHT
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177
Query: 801 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 859
+ S+ +D G + S S D S+RVW V G C+H L+ + + L
Sbjct: 178 NRVYSLQFD--GIHVVSGSLDTSIRVWDV---ETGNCIHTLTGHQSLTSGMELKDNI--L 230
Query: 860 LVIGCYQSLELWNMSENKTMTLTAHEGL--IAALAVSTETGYVASASHDKFVKLW 912
+ ++++W++ + + A + +V ++S D VKLW
Sbjct: 231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.6 bits (202), Expect = 2e-17
Identities = 35/203 (17%), Positives = 76/203 (37%), Gaps = 20/203 (9%)
Query: 638 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 697
DG+ + +G +D +W +T L+ H++ + ++F + + S D
Sbjct: 140 VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDT 197
Query: 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 757
++RVWD + + T GH + ++ N ++ S + D ++ W I G C +
Sbjct: 198 SIRVWDVETG-NCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTL 253
Query: 758 KGGTA----QMRFQPHLGRYLAAAAENVVSILDAETQAC-----RLSLQGHTKPIDSVCW 808
+G Q + + ++ + V + D +T L G + +
Sbjct: 254 QGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313
Query: 809 DPSGELLASVSED-----SVRVW 826
+ + A S + + V
Sbjct: 314 SNTKLVCAVGSRNGTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 3e-09
Identities = 45/254 (17%), Positives = 81/254 (31%), Gaps = 53/254 (20%)
Query: 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 761
W S + GH V++ + I S D ++ WS G C R G T
Sbjct: 1 WRR-GELKSPKVLKGHDDHVITC-LQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57
Query: 762 AQ-----------------------------------------MRFQPHLGRYLAAAAEN 780
H R ++ + +
Sbjct: 58 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 781 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL 840
+ + D ET C L GH + +++ + V+VW C+H L
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAV-RCVQYDGRRVVSGAYDFMVKVWDP---ETETCLHTL 173
Query: 841 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLTAHEGLIAALAVSTETGY 899
+ N+ +S F + ++ S+ +W++ TLT H+ L + + +
Sbjct: 174 QGHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNI 229
Query: 900 VASASHDKFVKLWK 913
+ S + D VK+W
Sbjct: 230 LVSGNADSTVKIWD 243
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (133), Expect = 9e-09
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 10/124 (8%)
Query: 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATS 693
+ + +L +G D +W T + L+ + + V TS
Sbjct: 217 QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 276
Query: 694 SFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLIC-SCDG--DGEIRY 745
S D TV++WD G +R + G V + K S +G + ++
Sbjct: 277 SDDGTVKLWDLKT-GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV 335
Query: 746 WSIN 749
+
Sbjct: 336 LDFD 339
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.9 bits (221), Expect = 4e-20
Identities = 49/301 (16%), Positives = 101/301 (33%), Gaps = 33/301 (10%)
Query: 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 687
R+ TSK + C D + + +G D +W +TL+ K L H+ + +++ +
Sbjct: 9 HCRSETSKGVYC-LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67
Query: 688 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 747
+ + ++ + ++ +C D I W
Sbjct: 68 I------ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 748 INNGSCTRVFKGG----TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI 803
+ + + + + A ++A+ + + + + T +L GH + I
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181
Query: 804 DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 862
C L+ S S D ++R+W + EC L +V
Sbjct: 182 A--CLQYRDRLVVSGSSDNTIRLWDI------ECGACLRVLEGHEELVRCIRFDNKRIVS 233
Query: 863 GCYQ-SLELWNMSENKTM----------TLTAHEGLIAALAVSTETGYVASASHDKFVKL 911
G Y +++W++ TL H G + L + S+SHD + +
Sbjct: 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILI 291
Query: 912 W 912
W
Sbjct: 292 W 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 2e-10
Identities = 39/204 (19%), Positives = 71/204 (34%), Gaps = 8/204 (3%)
Query: 711 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 770
+ S V L + I S D I+ W N C R+ G T + +
Sbjct: 8 IHCRSETSKGVYCLQYDDQ---KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
Query: 771 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 830
R + + + + L+ H +G ++ + S+ VW + S
Sbjct: 65 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124
Query: 831 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLTAHEGLIA 889
++ L + + F Y ++ +++++WN S + TL H+ IA
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 182
Query: 890 ALAVSTETGYVASASHDKFVKLWK 913
L V S S D ++LW
Sbjct: 183 CLQYRDR--LVVSGSSDNTIRLWD 204
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (116), Expect = 7e-07
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 637 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN---------LEEHSSLITDVRFSPSM 687
+ D K + +G +D K +W L EHS + ++F
Sbjct: 220 LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF- 278
Query: 688 PRLATSSFDKTVRVWD 703
++ +SS D T+ +WD
Sbjct: 279 -QIVSSSHDDTILIWD 293
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.5 bits (220), Expect = 1e-19
Identities = 45/288 (15%), Positives = 86/288 (29%), Gaps = 11/288 (3%)
Query: 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-----NLEEHSSLITDVRFSPSM 687
V S+ + + TGG +W +K+ + + I + P
Sbjct: 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 688 PRLATSSFDKTVRVWDADNPGYSLRTFMGHS--ASVMSLDFHPNKDDLICSCDGDGEIRY 745
L T+ +WD P ++ + S A +K C DG+ +
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 746 WSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDS 805
A + G L + + +L T I S
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229
Query: 806 VCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 865
+ + P+GE LA E S ++L + + S F + G
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLH---VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286
Query: 866 QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913
L W ++ + + + +S + Y+ + S DK +++
Sbjct: 287 NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.9 bits (195), Expect = 2e-16
Identities = 43/283 (15%), Positives = 87/283 (30%), Gaps = 14/283 (4%)
Query: 640 HFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 698
H ++DG++ D + L H ++ V S + T
Sbjct: 16 HVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTGG-KGC 73
Query: 699 VRVWDADNPGY----SLRTFMGHSASVMSLDFHPNKDDLICS----CDGDGEIRYWSINN 750
V+VWD +PG S + + S P+ LI ++ +
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 751 GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 810
+ + P + ++ +++ D Q QGHT +
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193
Query: 811 SGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 870
G L + D+ + ++ S + PT L V ++E+
Sbjct: 194 DGTKLWTGGLDN---TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250
Query: 871 WNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913
++++ L HE + +L + + S D + W+
Sbjct: 251 LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.9 bits (164), Expect = 1e-12
Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 693
S++ + G+ LA G + H + K L H S + ++F+ ++
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNK-PDKYQLHLHESCVLSLKFAYCGKWFVST 283
Query: 694 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 748
D + W G S+ S+SV+S D + D I + GD + + +
Sbjct: 284 GKDNLLNAWRTPY-GASIFQS-KESSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 86.8 bits (213), Expect = 1e-18
Identities = 38/279 (13%), Positives = 78/279 (27%), Gaps = 21/279 (7%)
Query: 636 VICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATS 693
+ C ++ D +A ++ + ++ L+EH+ +T V ++P R+ T
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 694 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 753
D+ VW + + + G I +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 754 TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE 813
V K +R ++L + + L + + +
Sbjct: 130 WWVCKHIKKPIRS----------------TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 173
Query: 814 LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 873
V E GE + E S + H F + + ++ L +
Sbjct: 174 ---EVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230
Query: 874 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912
+ + A E L + +A HD F L+
Sbjct: 231 DKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLF 269
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 76.1 bits (185), Expect = 3e-15
Identities = 39/323 (12%), Positives = 98/323 (30%), Gaps = 32/323 (9%)
Query: 619 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLW--HTDTLKSKTNLEEHSS 676
G + + + ++ +V ++ D + T G D+ A +W T K + +
Sbjct: 37 SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR 96
Query: 677 LITDVRFSPSMPRLATSSFDKTVRVWD--ADNPGYSLRTFMGHSASVMSLDFHPNKDDLI 734
VR++P+ + A S + + + +N + + S + L+
Sbjct: 97 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 156
Query: 735 CSCDGDGEIRYWSINNGSCTRV---------------------FKGGTAQMRFQPHLGRY 773
+ D + R +S G + F + R
Sbjct: 157 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 216
Query: 774 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE 833
+ ++ V + DA+ + +L T P+ +V + L+A+ + ++T S +
Sbjct: 217 AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA- 275
Query: 834 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAV 893
+ + + + H+ ++ ++V
Sbjct: 276 --GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISV 333
Query: 894 STETGY----VASASHDKFVKLW 912
+ + D + +W
Sbjct: 334 LSGGKAKCSQFCTTGMDGGMSIW 356
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.1 bits (154), Expect = 2e-11
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 6/118 (5%)
Query: 638 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 697
F ++ L+A G HD VL+ D+ K + + R + DK
Sbjct: 248 AVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK 306
Query: 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGS 752
+ G L + H SV + K C+ DG + W + +
Sbjct: 307 KASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.4 bits (121), Expect = 3e-07
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 797 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 855
+PI W+ +A + V ++ SG++ VHEL + + + P
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPD 62
Query: 856 YPSLLVIGCYQSLELWNM 873
++ G ++ +W +
Sbjct: 63 SNRIVTCGTDRNAYVWTL 80
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.1 bits (102), Expect = 6e-05
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 5/78 (6%)
Query: 641 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP----SMPRLATSSFD 696
DKKA H + ++ + + T+ D
Sbjct: 292 QRGLTARERFQNLDKKASSE-GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD 350
Query: 697 KTVRVWDADNPGYSLRTF 714
+ +WD + +L+
Sbjct: 351 GGMSIWDVRSLESALKDL 368
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 82.3 bits (201), Expect = 1e-17
Identities = 50/285 (17%), Positives = 92/285 (32%), Gaps = 6/285 (2%)
Query: 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSMPRLA 691
+ S+DGK L + + W T S + + H+++IT ++ S L
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT-TSKGDLF 70
Query: 692 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 751
T S+D ++V A G + + S L + D I I +S
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
Query: 752 SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 811
+ + + + V + + H I SV + +
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190
Query: 812 GELLASVS-EDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 870
G L + V ++V + E + + + K + P L S+ +
Sbjct: 191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 250
Query: 871 WNM---SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912
WNM S++ + AH + + SA D +K W
Sbjct: 251 WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 65.0 bits (156), Expect = 8e-12
Identities = 29/247 (11%), Positives = 63/247 (25%), Gaps = 8/247 (3%)
Query: 671 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPN 729
H+ IT + S L ++ + + WD G S R F H+ + +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSK 66
Query: 730 KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET 789
D + + D ++ L
Sbjct: 67 GD--LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124
Query: 790 QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHS 849
+ + S + + +V +V + + + S
Sbjct: 125 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 184
Query: 850 CVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVST----ETGYVASASH 905
F L+ + + ++++ N + T A + +A+ S
Sbjct: 185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244
Query: 906 DKFVKLW 912
D V +W
Sbjct: 245 DNSVIVW 251
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.2 bits (128), Expect = 2e-08
Identities = 20/163 (12%), Positives = 39/163 (23%), Gaps = 39/163 (23%)
Query: 711 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 770
+ GH+ ++ +L + + S D +G I W I+ G RVF
Sbjct: 5 DQVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPD----------- 52
Query: 771 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 830
H I + G+L +D ++V G
Sbjct: 53 ---------------------------VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG 85
Query: 831 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 873
+ ++ + +
Sbjct: 86 SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.1 bits (107), Expect = 9e-06
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 638 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSF 695
C +S D LATG D ++W+ + H+ + + + ++
Sbjct: 229 CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288
Query: 696 DKTVRVWD 703
D ++ W+
Sbjct: 289 DSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.0 bits (86), Expect = 0.003
Identities = 13/107 (12%), Positives = 33/107 (30%), Gaps = 5/107 (4%)
Query: 726 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 785
D + + + + A + + P R + +N V +
Sbjct: 192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 251
Query: 786 DAETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTV 828
+ + + ++SV W + + S +D +++ W V
Sbjct: 252 NMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNV 297
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.9 bits (195), Expect = 1e-16
Identities = 35/307 (11%), Positives = 70/307 (22%), Gaps = 29/307 (9%)
Query: 636 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRLAT 692
+ LL D ++ D +L + + F +
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
Query: 693 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 752
+ + S + + A++ DD + + DG I N
Sbjct: 74 VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133
Query: 753 CTRVFKGGT---------AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT--- 800
+ + R + + V +
Sbjct: 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193
Query: 801 -KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------------GECVHELSCNGNK 846
+ D E A S D V V + + +
Sbjct: 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253
Query: 847 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 906
+S F P + L G + WN+ K + A + + ++ + A+ D
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSD 313
Query: 907 KFVKLWK 913
K
Sbjct: 314 DTFKTNA 320
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 78.4 bits (191), Expect = 5e-16
Identities = 33/272 (12%), Positives = 67/272 (24%), Gaps = 30/272 (11%)
Query: 671 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHP 728
+ I+D++ PS L +S+D ++ V+ D L + + ++ +F
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 729 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVV------ 782
N D I GEI + + A +
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126
Query: 783 ----SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGECV 837
+ D L+ D + L +S V+ + + +
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186
Query: 838 HELSCNGNKFHSCVFHPTYPSLLVIGCY-----------------QSLELWNMSENKTMT 880
E S + P S +
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246
Query: 881 LTAHEGLIAALAVSTETGYVASASHDKFVKLW 912
T + ++ S ++ +A D + W
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.7 bits (127), Expect = 4e-08
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 638 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 697
FS K L T G D W+ T K N + + + V+ + S L ++ D
Sbjct: 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILCLATSDD 314
Query: 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 729
T + A + +T +++S+ + + N
Sbjct: 315 TFKTNAAID-----QTIELNASSIYIIFDYEN 341
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 11/169 (6%), Positives = 33/169 (19%), Gaps = 37/169 (21%)
Query: 711 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 770
++ + + P+ L+ DG + + + +
Sbjct: 4 VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQ----------- 51
Query: 771 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 830
+ P+ + + +L V + V
Sbjct: 52 -------------------------SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86
Query: 831 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 879
+ N + L+ +E+ +
Sbjct: 87 IGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG 135
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.6 bits (194), Expect = 2e-16
Identities = 45/310 (14%), Positives = 93/310 (30%), Gaps = 33/310 (10%)
Query: 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 687
++R + VI C + + TG DK ++ + K L H + ++++
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65
Query: 688 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 747
L + S D+TVRVWD + +S I + D + W
Sbjct: 66 -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124
Query: 748 INNGSCTRVFKGGTAQ------------------------MRFQPHLGRYLAAAAENVVS 783
+ S H ++ + +N +
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 184
Query: 784 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 842
+ D C L GHT I S +D + S S D ++R+W + +G + +
Sbjct: 185 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 244
Query: 843 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 902
V + + + + H ++A+ + +
Sbjct: 245 LVGLLRLSDKFL------VSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 298
Query: 903 ASHDKFVKLW 912
+ + ++
Sbjct: 299 SGSENQFNIY 308
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.1 bits (133), Expect = 9e-09
Identities = 6/72 (8%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 678 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSC 737
++ + + S + +++ + + + + S++F L+ +
Sbjct: 284 LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT--LVAAV 341
Query: 738 DGDGEIRYWSIN 749
+ DG+ ++
Sbjct: 342 EKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 6e-08
Identities = 18/126 (14%), Positives = 44/126 (34%), Gaps = 11/126 (8%)
Query: 793 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 851
R +L+GH + + C + + ++D +RV+ + + + +LS + +
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSIN---KKFLLQLSGHDGGVWALK 60
Query: 852 FHPTYPSLLVIG----CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 907
+ +LV G + ++ + Y+ + S D
Sbjct: 61 YAHG--GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118
Query: 908 FVKLWK 913
+ +WK
Sbjct: 119 TLHVWK 124
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 4e-07
Identities = 42/250 (16%), Positives = 77/250 (30%), Gaps = 10/250 (4%)
Query: 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 688
V S + + G + L ++ + + VR
Sbjct: 112 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171
Query: 689 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 748
+ S + L GH+ + S + + I + D IR W +
Sbjct: 172 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM-DTTIRIWDL 230
Query: 749 NNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 808
NG +G TA + ++L +AA + R HT +
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290
Query: 809 DPSGELLASVSEDSVRVWTVGSGSEGECVH-ELSCNGNKFHSCVFHPTYPSLLVIGCYQS 867
S +L S SE+ ++ + S G+ VH + + ++ S F L+
Sbjct: 291 YVSDNILVSGSENQFNIYNLRS---GKLVHANILKDADQIWSVNFKGKT--LVAAVEKDG 345
Query: 868 ---LELWNMS 874
LE+ + S
Sbjct: 346 QSFLEILDFS 355
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 78.4 bits (191), Expect = 3e-16
Identities = 48/291 (16%), Positives = 95/291 (32%), Gaps = 14/291 (4%)
Query: 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS 694
+ + G + + +L EHS T + SPS A+
Sbjct: 19 TAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 695 FDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 753
VR+WD + L+T + S V + + + +G + + +
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137
Query: 754 TRVFKGGTA-----QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 808
+ G A R ++ + +N V+I + + + HTK + SV +
Sbjct: 138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197
Query: 809 DPSGELLASVSEDSVRVWTVGSGSEGECVH-----ELSCNGNKFHSCVFHPTYPSLLVIG 863
+P G L AS D V G V + + + P +
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257
Query: 864 CYQSLELWNMSENKTM-TLTAHEGL-IAALAVSTETGYVASASHDKFVKLW 912
+++++WN++ K T+ + L + + S S + F+
Sbjct: 258 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.4 bits (134), Expect = 6e-09
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 638 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSSFD 696
+S DG +A+ DK +W+ TLK + + + + + + L + S +
Sbjct: 243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 302
Query: 697 KTVRVWDAD 705
+ + +
Sbjct: 303 GFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.3 bits (118), Expect = 5e-07
Identities = 32/256 (12%), Positives = 69/256 (26%), Gaps = 18/256 (7%)
Query: 633 TSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 690
+ + S G A+G + T KT + S + D+ + R+
Sbjct: 58 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 117
Query: 691 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 750
A + + + A M+ D
Sbjct: 118 AAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP 177
Query: 751 G----SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET-------QACRLSLQGH 799
S +R+ P + + + + + + + L H
Sbjct: 178 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 237
Query: 800 TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYP 857
+ + + W P G +AS S D ++++W V + + + + T
Sbjct: 238 SGSVFGLTWSPDGTKIASASADKTIKIWNVAT---LKVEKTIPVGTRIEDQQLGIIWTKQ 294
Query: 858 SLLVIGCYQSLELWNM 873
+L+ I + N
Sbjct: 295 ALVSISANGFINFVNP 310
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.3 bits (188), Expect = 1e-15
Identities = 34/307 (11%), Positives = 81/307 (26%), Gaps = 27/307 (8%)
Query: 634 SKVICCHFSSDGKLLATGGHDKKAV----LWHTDTLKSKTNLEEHSSLITDVRFSPSMP- 688
+ + +A V + SS++T V+FSP
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 689 -RLATSSFDKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDG 739
L + V VW F + + + + + +
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137
Query: 740 DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-------ENVVSILDAETQAC 792
D + S ++G+ G + ++ + + A
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197
Query: 793 RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV--WTVGSGSEGECVHELSCNGNKFHSC 850
+ + V + P ++ + SG + + +
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257
Query: 851 VFHPTYPSLLVIGCYQSLELWNMSENK---TMTLTAHEGLIAALAVS-TETGYVASASHD 906
+ +G ++ +W+++ +K TL + + V T G + S S D
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317
Query: 907 KFVKLWK 913
+ ++
Sbjct: 318 GTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 2e-08
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 689 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASV--MSLDFHPNKDDLICSCDGDGEIRYW 746
+ AT D T+RVWD ++ + + + + I S DG + ++
Sbjct: 265 KFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Query: 747 SI 748
+
Sbjct: 324 EL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.6 bits (124), Expect = 1e-07
Identities = 30/266 (11%), Positives = 65/266 (24%), Gaps = 28/266 (10%)
Query: 633 TSKVICCHFS--SDGKLLATGGHDKKAVLWHTDT--------LKSKTNLEEHSSLITDVR 682
+S V FS + L +G K ++W + K+ + + I+D+
Sbjct: 63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122
Query: 683 FSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 740
+ RL D D+ + D
Sbjct: 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 182
Query: 741 GEIRYWSINNGSC---------TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 791
+ Y + + + + E
Sbjct: 183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242
Query: 792 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF--H 848
Q + + A+V D ++RVW V + +CV + + + +
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT---SKCVQKWTLDKQQLGNQ 299
Query: 849 SCVFHPTYPSLLVIGCY-QSLELWNM 873
T ++ +L + +
Sbjct: 300 QVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 3e-04
Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 16/179 (8%)
Query: 717 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKGGTAQ----MRFQPHL 770
L + P + + C +R + F G + ++F P
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 771 -GRYLAAAAEN-VVSILDAETQACRLSL--------QGHTKPIDSVCWDPSGELLASVSE 820
+YL + E+ V + S+ Q PI + WD G L V E
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 821 DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 879
S G + E+S + + ++C + P + ++
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 194
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 74.0 bits (180), Expect = 1e-14
Identities = 20/316 (6%), Positives = 74/316 (23%), Gaps = 45/316 (14%)
Query: 641 FSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKT 698
+ + + + + + K+ + +P ++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 699 VRVWDADNPGYSLRTFMG-----HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 753
+ D D + + S+ S P+ ++ + + + +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 754 TRVFKGGTAQMRFQPHLGRY-------------LAAAAENVVSILDAETQACRLSLQGHT 800
VF A + +D +T ++L
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183
Query: 801 KP------------------------IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGEC 836
+ ++ + + ++ +V +
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243
Query: 837 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE 896
E + + + + P P+ + L +++ + K + + +A +
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKK 302
Query: 897 TGYVASASHDKFVKLW 912
+ + ++
Sbjct: 303 GDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 47.4 bits (111), Expect = 5e-06
Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 2/73 (2%)
Query: 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 692
T S G ++ A + K V F +L
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL 308
Query: 693 SSFDKTVRVWDAD 705
+ V++ D
Sbjct: 309 GGTFNDLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 16/130 (12%), Positives = 34/130 (26%), Gaps = 5/130 (3%)
Query: 636 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSS 694
F D + AT + T K+ T + L SP P
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV 270
Query: 695 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 754
+ + +D ++ + + F D + ++ ++ +
Sbjct: 271 LN-RLAKYDLKQ-RKLIKAA-NLDHTYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKV 326
Query: 755 RVFKGGTAQM 764
+ K M
Sbjct: 327 KNIKLPGGDM 336
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.5 bits (181), Expect = 1e-14
Identities = 35/316 (11%), Positives = 81/316 (25%), Gaps = 71/316 (22%)
Query: 665 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-----------PGYSLRT 713
+ + + H + I V + S D ++VWD + ++
Sbjct: 4 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61
Query: 714 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM--------- 764
+ H + +++ + L+ + G++ ++ I T+ +
Sbjct: 62 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121
Query: 765 --------RFQPHLGRYLAAAAEN-------------------VVSILDAETQACRLSLQ 797
L L A + E Q S
Sbjct: 122 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 181
Query: 798 GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 857
++ SV G L+A+ + + S E + + + +
Sbjct: 182 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240
Query: 858 SLLVIGCYQS---------------------LELWNMSENKTMTLTAHEGLIAALAVSTE 896
+ L + S ++ AH + +L+ +
Sbjct: 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 300
Query: 897 TGYVASASHDKFVKLW 912
+ SA D ++ W
Sbjct: 301 GETLCSAGWDGKLRFW 316
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.9 bits (143), Expect = 6e-10
Identities = 27/200 (13%), Positives = 49/200 (24%), Gaps = 28/200 (14%)
Query: 660 WHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA 719
+ + + S T V S +AT + TV++ + HS
Sbjct: 169 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 227
Query: 720 SVMSLD----FHPNKDDLICSCDGDGEIRYWSINNGSCTR-------------------V 756
S + L+ ++
Sbjct: 228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 287
Query: 757 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI----DSVCWDPSG 812
+ F +A + + D +T+ +L H I D + D G
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 347
Query: 813 ELLASVSEDSVRVWTVGSGS 832
+ LA V+ G S
Sbjct: 348 DSLAEPGVFDVKFLKKGWRS 367
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 1e-06
Identities = 22/174 (12%), Positives = 49/174 (28%), Gaps = 16/174 (9%)
Query: 584 DRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 643
L+ G + V+ + S + SV+ S +
Sbjct: 195 RGLIATGFNNGTVQISELSTLRPLYN---FESQHSMINNSNSIRSVKFSPQGSLLAIAHD 251
Query: 644 DGKLLATGGHDKKAVLW------HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 697
++ + T + ++ HSS + + F+ S L ++ +D
Sbjct: 252 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 311
Query: 698 TVRVWDADNPGYSLRTFMGHSASV----MSLDFHPNKDDLICSCDGDGEIRYWS 747
+R WD + T H + L + G ++++
Sbjct: 312 KLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDE--HGDSLAEPGVFDVKFLK 362
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 39/313 (12%), Positives = 84/313 (26%), Gaps = 33/313 (10%)
Query: 447 NSNPQQHTLSNQQSQSSNHNLHQQDKMGPAGSVTLDGSMSNSFRGNDQTGRKRKQPVSSS 506
+ + ++ + ++ + + D +S+ D G
Sbjct: 97 TREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF 156
Query: 507 GPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPH----SGTTSKPLMMFGTDGAG 562
++S T N + S+ +G + + +
Sbjct: 157 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLR 216
Query: 563 TLTSPSNQLWDDKDLEL-----RADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDV 617
L + +Q + + L+ ++ ++ G
Sbjct: 217 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER---IGSLS 273
Query: 618 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS- 676
S + + A +S V+ F+ G+ L + G D K W T + T L H
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 333
Query: 677 ---LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDL 733
+ LA V+D R+ MG + ++
Sbjct: 334 IEIEEDILAVDEHGDSLAEPG------VFDVKFLKKGWRSGMGA-----------DLNES 376
Query: 734 ICSCDGDGEIRYW 746
+C D IR++
Sbjct: 377 LCCVCLDRSIRWF 389
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 69.5 bits (168), Expect = 4e-13
Identities = 21/227 (9%), Positives = 46/227 (20%), Gaps = 21/227 (9%)
Query: 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 686
S + + G + ++ + K E+S F
Sbjct: 131 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH-DYAPAFDAD 189
Query: 687 MPRLATSSFDKTVRVWDADN------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 740
L S+ D S P
Sbjct: 190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249
Query: 741 GEIRYWSI------NNGSCTRVFKGGTAQMRFQPH--LGRYLAAAAEN-VVSILDAETQA 791
++ S + + H Y A E V+ D +T+
Sbjct: 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR- 308
Query: 792 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 837
+ + + + + +D + + + + V
Sbjct: 309 ---KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 68.4 bits (165), Expect = 1e-12
Identities = 26/305 (8%), Positives = 62/305 (20%), Gaps = 26/305 (8%)
Query: 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 690
++ D K+ G + L D K E + +
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99
Query: 691 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP---------NKDDLICSCDGDG 741
A + D+ + G A +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 742 EIRYWSINNGSCTRVFKGGT-AQMRFQPHLGRYLAAAAE-NVVSILDAETQACR------ 793
I + + + + L + ++ D
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219
Query: 794 -LSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG-----SGSEGECVHELSCNGNKF 847
+ + P + D ++ + + L + +
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279
Query: 848 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 907
V L +++ KT +T + + L +S + V D
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDV---KTRKVTEVKNNLTDLRLSADRKTVMVRKDDG 336
Query: 908 FVKLW 912
+ +
Sbjct: 337 KIYTF 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 66.0 bits (159), Expect = 5e-12
Identities = 26/298 (8%), Positives = 57/298 (19%), Gaps = 30/298 (10%)
Query: 641 FS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 699
FS DG L+A + + D + I VR +
Sbjct: 10 FSPLDGDLIAFVSRGQ---AFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGD 66
Query: 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 759
+ D F + +V ++ N + + D +
Sbjct: 67 FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR 126
Query: 760 GTAQMRFQPHLGRYLAAAAENVVSILDAETQA-----------CRLSLQGHTKPIDSVCW 808
F A + + + +
Sbjct: 127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAF 186
Query: 809 DPSGELLASVSED-SVRVWTVGSGS----EGECVHELSCNGNKFHSCVFHPTYPSLLVIG 863
D + L +S + + + P G
Sbjct: 187 DADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR-SMTSEAG 245
Query: 864 CYQSLELWNM---------SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912
Y +++ + L + + + Y A + +
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 303
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 59.9 bits (143), Expect = 6e-10
Identities = 16/166 (9%), Positives = 36/166 (21%), Gaps = 17/166 (10%)
Query: 599 FLSHDDTDP-RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKA 657
+LS+ DP D + + G +D
Sbjct: 195 YLSYRSLDPSPDRVVLNFSFEVV---SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251
Query: 658 VLWHT-------DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 710
+ + + LE + + + + +D
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT---- 307
Query: 711 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 756
R ++ L + + DG+I + + R
Sbjct: 308 -RKVTEVKNNLTDLRLSAD-RKTVMVRKDDGKIYTFPLEKPEDERT 351
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 58.3 bits (139), Expect = 2e-09
Identities = 16/181 (8%), Positives = 41/181 (22%), Gaps = 15/181 (8%)
Query: 636 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-------LEEHSSLITDVRFSPSMP 688
F +D K L + L + + P
Sbjct: 181 DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM 240
Query: 689 RLATSSFDKTV---RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDGEI 743
+D R + R + +S++ + + G +
Sbjct: 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 300
Query: 744 RYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQGHTKP 802
+ + T K +R + + + + E +++ +P
Sbjct: 301 LKYDVKTRKVT-EVKNNLTDLRLSAD-RKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP 358
Query: 803 I 803
+
Sbjct: 359 L 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 22/250 (8%), Positives = 56/250 (22%), Gaps = 21/250 (8%)
Query: 681 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 740
FSP L + D + + + + + +
Sbjct: 8 EDFSPLDGDLIAFVSRGQAFIQDVSG---TYVLKVPEPLRIRYVRRGGDTKVAFIHGTRE 64
Query: 741 GE-IRYWSINNGSCTRVFKGGT--AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 797
G+ + + G + + M + + A + +D ET + +
Sbjct: 65 GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124
Query: 798 GHTKPIDSVCWDPSGELLASVSED-------SVRVWTVGSGSEGECVHELSCNGNKFHSC 850
I + +A V EG + + + ++
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184
Query: 851 VFHPTYPSLLVIGCYQSLELWN--------MSENKTMTLTAHEGLIAALAVSTETGYVAS 902
F +L + + +K + G + + +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244
Query: 903 ASHDKFVKLW 912
+D
Sbjct: 245 GEYDLNDMYK 254
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 66.0 bits (159), Expect = 5e-12
Identities = 28/305 (9%), Positives = 66/305 (21%), Gaps = 38/305 (12%)
Query: 646 KLLATGGHDKKAVLW--HTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVW 702
+ K V+ + + + +P AT + +++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 703 DADNP----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 758
D L T S+ P+ L + ++
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 759 GGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKP----- 802
T R R + A + ++D E +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 803 -IDSVCWDPSGELLASVSEDSVRVWTVG----SGSEGECVHELSCNGNKFHSCVFHPTYP 857
D + E ++ + + + +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241
Query: 858 ----------SLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 907
G Y LE +++ +N ++ ++ VST+ V
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301
Query: 908 FVKLW 912
+ +
Sbjct: 302 DLAAY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.0 bits (120), Expect = 3e-07
Identities = 19/232 (8%), Positives = 49/232 (21%), Gaps = 28/232 (12%)
Query: 601 SHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLW 660
+ ++ ++ DG L G D +
Sbjct: 102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP 161
Query: 661 HTDTLKSK---------------------TNLEEHSSLITDVRFSPSMPRLATSSFDKTV 699
TL + + +++ +
Sbjct: 162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221
Query: 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 759
D + ++R S +P K + + + + + +
Sbjct: 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIKRVPL 278
Query: 760 GTA--QMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPIDSVCW 808
+ + G + A ++ DAET + + S+
Sbjct: 279 PHSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLAS 329
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.4 bits (157), Expect = 5e-12
Identities = 29/288 (10%), Positives = 69/288 (23%), Gaps = 56/288 (19%)
Query: 671 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 730
+ H+ IT + +P L + S+D + W + + HS ++SLD +
Sbjct: 9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKAQ 58
Query: 731 ----------------------------------DDLICSCDGDGEIRYWSINNGSCTRV 756
+ + D D I + +
Sbjct: 59 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 118
Query: 757 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 816
+ + + + ++ + + PS +A
Sbjct: 119 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA 178
Query: 817 SVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---------S 867
+ + E + + +
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238
Query: 868 LELWNMSENKT--MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913
+ ++++ L AH+ + L T + S+ D +K W
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.8 bits (153), Expect = 2e-11
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 683 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 742
+AT S D + ++ P ++ H V +L + + S D
Sbjct: 223 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADAC 280
Query: 743 IRYWSI 748
I+ W++
Sbjct: 281 IKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 2e-06
Identities = 9/128 (7%), Positives = 33/128 (25%), Gaps = 1/128 (0%)
Query: 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 761
+ + + S + + + +
Sbjct: 159 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 218
Query: 762 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLS-LQGHTKPIDSVCWDPSGELLASVSE 820
+ + + + I + + L H ++++ W+ L++S ++
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGAD 278
Query: 821 DSVRVWTV 828
++ W V
Sbjct: 279 ACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.8 bits (101), Expect = 5e-05
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 711 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 753
L+T GH+ + +L +P + S DG I WS ++
Sbjct: 6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ 43
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 8e-05
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 795 SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG--ECVHELSCNGNKFHSCV 851
++ GH K I ++ +P L S S D + W+ S + + L + + +S +
Sbjct: 8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSI 63
Query: 852 FHPTYPSLLVIGCYQSLELWNM 873
+ I ++ +
Sbjct: 64 SWDDTLKVNGITKHEFGSQPKV 85
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 62.5 bits (151), Expect = 1e-10
Identities = 30/298 (10%), Positives = 69/298 (23%), Gaps = 29/298 (9%)
Query: 641 FSSDGK--LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 698
D + T + L T + KT L+ + + R S S L D
Sbjct: 26 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGK 84
Query: 699 VRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 754
V + D ++ + S I +
Sbjct: 85 VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144
Query: 755 RVFKGGTAQMRFQP-------------HLGRYLAAAAE--NVVSILDAETQACRLSLQGH 799
++ Q H + + ++D + +
Sbjct: 145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS 204
Query: 800 T-KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 858
+ + D S + + ++ + + EG+ V G H +
Sbjct: 205 AERFLHDGGLDGSHRYFITAANARNKLVVIDT-KEGKLVAIEDTGGQTPHPG-RGANFVH 262
Query: 859 LLVIGCYQSLELWN----MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912
+ + + + + + I + G + +H L+
Sbjct: 263 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 58.3 bits (139), Expect = 2e-09
Identities = 28/290 (9%), Positives = 71/290 (24%), Gaps = 33/290 (11%)
Query: 641 FSSDGKLLAT----------GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 690
+ DG +A G ++ TL ++E + V P M
Sbjct: 54 VADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWM--T 111
Query: 691 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH------PNKDDLICSCDGDGEIR 744
+ + KT+ + + A LD P D DG +
Sbjct: 112 SLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLA 171
Query: 745 YWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPID 804
+ + + + + + +
Sbjct: 172 KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIH------------ 219
Query: 805 SVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 864
SG+ + +++ G +++ + +
Sbjct: 220 -QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 278
Query: 865 YQSLELWNMSENKTMTLTAHEGLIAALAVST--ETGYVASASHDKFVKLW 912
+ + + + + + I ++ VS + A ++ DK + +
Sbjct: 279 SRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIH 328
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 28/267 (10%), Positives = 51/267 (19%), Gaps = 7/267 (2%)
Query: 468 HQQDKMGPAGSVTLDGSMSNSFRGNDQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPS 527
D P L G+ S + A P
Sbjct: 90 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD 149
Query: 528 TPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLV 587
GT + + + +
Sbjct: 150 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL 209
Query: 588 EDGSLDDNVESFLSHDDTD---PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD 644
+ + P + + G+ V +
Sbjct: 210 VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 269
Query: 645 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL--ATSSFDKTVRVW 702
+ V+ T + E I + S L A S+ DKT+ +
Sbjct: 270 RDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIH 328
Query: 703 DADNPGYSLRTFMGHSASVMSLDFHPN 729
DA++ G LR+ +
Sbjct: 329 DAES-GEELRSVNQLGHGPQVITTADM 354
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.5 bits (124), Expect = 1e-07
Identities = 25/210 (11%), Positives = 48/210 (22%), Gaps = 28/210 (13%)
Query: 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 686
T+ DG L + ++ E LI +S
Sbjct: 150 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI----THTEVFHPEDEFLINHPAYSQK 205
Query: 687 MPRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPN---------------- 729
RL ++ + D + L + + + + P
Sbjct: 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265
Query: 730 ---KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA--QMRFQPHLGRYLAAAA--ENVV 782
+ D + G F+ G + L A + + +
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTL 325
Query: 783 SILDAETQACRLSLQGHTKPIDSVCWDPSG 812
I DAE+ S+ + G
Sbjct: 326 YIHDAESGEELRSVNQLGHGPQVITTADMG 355
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (131), Expect = 2e-08
Identities = 16/108 (14%), Positives = 43/108 (39%)
Query: 64 IARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQ 123
I +T++ +E ++ Q + + Q++ +Q Q+ Q+ +Q ++
Sbjct: 192 ILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK 251
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ LL+ + Q+ +Q ++ Q + + + Q Q +
Sbjct: 252 MENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (130), Expect = 2e-08
Identities = 13/104 (12%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
++ + E ++ R + + Q + + Q++++Q +Q+++ Q+ Q+ +
Sbjct: 193 LQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQ--MMEQKERSYQEHLKQLTE 250
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ Q ++ ++ + Q+Q+Q ++ Q++ + +
Sbjct: 251 KMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQ 294
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (130), Expect = 2e-08
Identities = 12/88 (13%), Positives = 39/88 (44%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ + + Q + + Q++ + ++ Q+ +Q +M+ +Q +Q++
Sbjct: 210 RVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL 269
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ Q+Q+Q ++ Q+ + + Q +
Sbjct: 270 KLQEQEQLLKEGFQKESRIMKNEIQDLQ 297
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (125), Expect = 1e-07
Identities = 13/118 (11%), Positives = 46/118 (38%)
Query: 56 WSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQ 115
+ + T+ + + I+ + + Q + + Q+ + +Q+
Sbjct: 178 LQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQK 237
Query: 116 QQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++ Q+ + +++ R ++Q + + Q+Q+Q + Q++ + + +D
Sbjct: 238 ERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 295
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (118), Expect = 7e-07
Identities = 14/102 (13%), Positives = 45/102 (44%)
Query: 54 EWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQ 113
+ + I K AS ++ + +Q +Q+++ Q+ +Q +++ +
Sbjct: 196 DQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEND 255
Query: 114 QQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
+ Q ++Q++ L ++ ++ ++ Q + + + + Q Q
Sbjct: 256 RVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQ 297
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.1 bits (126), Expect = 9e-08
Identities = 25/319 (7%), Positives = 71/319 (22%), Gaps = 50/319 (15%)
Query: 641 FSSDGK---LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM---------- 687
+ + + W + T + ++ S
Sbjct: 27 PGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSF 86
Query: 688 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM-------SLDFHPNKDDLICSCDGD 740
R A V V+D + A + + L+ G
Sbjct: 87 ARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS 145
Query: 741 GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS----- 795
S+ S ++ K + + + ++ D
Sbjct: 146 SAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205
Query: 796 -LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 854
+ + G L+ +V+ + + + + N + + F
Sbjct: 206 CTGAQNCSSQAAQANYPGMLVWAVASS-ILQGDIPAAG-ATMKAAIDGNESGRKADNFRS 263
Query: 855 TYPSLLVIGCYQSLELWNMSENKTMTLTA-------------------HEGLIAALAVST 895
++ + E+ L A + A+ +
Sbjct: 264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ 323
Query: 896 --ETGYVASASHDKFVKLW 912
+ A+++ + + ++
Sbjct: 324 DGASDNYANSAGTEVLDIY 342
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.4 bits (88), Expect = 0.003
Identities = 11/214 (5%), Positives = 44/214 (20%), Gaps = 20/214 (9%)
Query: 529 PSTHTPGDVISMPALPHSGTTSKP-LMMFGTDGAG---TLTSPSNQLWDDKDLELRADMD 584
+ + + H + + + L + A
Sbjct: 153 VPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC 212
Query: 585 RLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKE--ANSVRASTSKVICCHFS 642
+ + + D G + E + ++
Sbjct: 213 SSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272
Query: 643 SDGKLLATGGHDKKAV---------LWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL--A 691
+ + + ++ + + + + A
Sbjct: 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYA 331
Query: 692 TSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSL 724
S+ + + ++DA + + + +S+
Sbjct: 332 NSAGTEVLDIYDAAS-DQDQSSVELDKGPESLSV 364
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 48.7 bits (114), Expect = 2e-06
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 692 TSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 750
S + + VW+ ++ G +L + V + P+K L + + + I
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68
Query: 751 GSCTRVF 757
F
Sbjct: 69 DDGALTF 75
|
| >d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Seed storage 7S protein species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]
Score = 47.9 bits (114), Expect = 2e-06
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 28/122 (22%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ-----------------QQQQLQMQQ 129
E ++ QQQ ++ + QQ Q HQ+ + + + +
Sbjct: 80 PETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAIS 139
Query: 130 ILLQRHAQQQQQ-----------HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
+L + Q +H + QQQQQ ++Q Q QQQ +G +L
Sbjct: 140 LLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVL 199
Query: 179 NG 180
+G
Sbjct: 200 SG 201
|
| >d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Seed storage 7S protein species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]
Score = 37.5 bits (87), Expect = 0.004
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 62 IFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
I + T+ ++++ + L + + + QQQQQQ+ +Q HQQQ+++
Sbjct: 138 ISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGG 196
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 47.3 bits (111), Expect = 6e-06
Identities = 31/314 (9%), Positives = 67/314 (21%), Gaps = 44/314 (14%)
Query: 641 FSSDGK--LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 698
D T + L D+ K ++ + + R S S L D
Sbjct: 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDAR 84
Query: 699 VRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 754
+ + D ++ + + S I +
Sbjct: 85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144
Query: 755 RVFKGGTAQ---MRFQPHLGRYLAAAAEN-------------VVSILDAETQACRLSLQG 798
++ + P A+ V+ + + ++ G
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG 204
Query: 799 HTKPIDSVCWDPSGELLASV-------------SEDSVRVWTVGSGSEGECVHELSCNGN 845
+ WD S + + VG
Sbjct: 205 AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY 264
Query: 846 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVA---- 901
H S+ +IG + K L G + ++ ++
Sbjct: 265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWK-KVAELQGQGGGSLFIKTHPKSSHLYVDTT 323
Query: 902 ---SASHDKFVKLW 912
A + V ++
Sbjct: 324 FNPDARISQSVAVF 337
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.0 bits (87), Expect = 0.004
Identities = 21/153 (13%), Positives = 39/153 (25%), Gaps = 22/153 (14%)
Query: 626 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 685
AN V V DG + G K + K L+ ++ P
Sbjct: 257 ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY---AWKKVAELQGQGGGSLFIKTHP 313
Query: 686 -------SMPRLATSSFDKTVRVWDADN--------PGYSLRTFMGHSASVMSLDFHPNK 730
+ ++V V+D N P + V+ +++
Sbjct: 314 KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 373
Query: 731 DDLICSC----DGDGEIRYWSINNGSCTRVFKG 759
D++ S + + V K
Sbjct: 374 DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 406
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 41.0 bits (94), Expect = 4e-04
Identities = 28/267 (10%), Positives = 70/267 (26%), Gaps = 6/267 (2%)
Query: 650 TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPG 708
+ + K + S+ SP ++ ++ V + D
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTAT-N 64
Query: 709 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQP 768
+ T S+ K + + + +N V G +
Sbjct: 65 NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124
Query: 769 HLGRYL--AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVW 826
G+ L + VS+++ T+A ++ P ++ + +
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184
Query: 827 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG 886
+ ++ + V + ++ + + NK
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244
Query: 887 LIAALAVSTETGYV-ASASHDKFVKLW 912
A +AV+ + V + S V +
Sbjct: 245 DPAGIAVTPDGKKVYVALSFCNTVSVI 271
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 40.6 bits (93), Expect = 5e-04
Identities = 14/109 (12%), Positives = 37/109 (33%), Gaps = 3/109 (2%)
Query: 773 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS--VRVWTVGS 830
Y+A + + +S++D + ++ + P+ P G + + S V + +
Sbjct: 5 YIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTAT 63
Query: 831 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 879
+ V S S Y + + ++ + + T+
Sbjct: 64 NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV 112
|
| >d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 239 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Seed storage 7S protein species: Soybean (Glycine max), proglycinin [TaxId: 3847]
Score = 40.3 bits (94), Expect = 6e-04
Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 27/115 (23%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQ-------------------QQQQQLQMQQILLQ 133
++ QQ QQ+ QS +P + Q+ + + I+
Sbjct: 81 STFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDT 140
Query: 134 RHAQQQQQHQQQ--------HQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
+ Q + Q+ + QQ+ Q+ QQ++ +G +L+G
Sbjct: 141 NSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSG 195
|
| >d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 125 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin family: Seed storage protein, 2S albumin domain: 2S albumin RicC3 species: Castor bean (Ricinus communis) [TaxId: 3988]
Score = 36.8 bits (85), Expect = 0.002
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
RE QQ +Q+ Q++ ++ Q ++ ++ L+M Q+ Q+ QQ QQ
Sbjct: 10 REGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQ--QESQQLQQCC 67
Query: 147 QQQQQQQQQPP---------QQPQQQQPQQQQQRR 172
Q +Q + + Q QQ Q ++ R
Sbjct: 68 NQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESER 102
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 913 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.92 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.92 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.91 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.91 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.87 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.87 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.85 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.85 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.83 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.8 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.79 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.79 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.77 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.77 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.75 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.67 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.59 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.58 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.47 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.47 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.33 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.31 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.25 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.24 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.23 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.19 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.07 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.07 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.04 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.03 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.99 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.9 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.76 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.75 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.73 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.71 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.61 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.61 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.59 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.06 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.95 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.86 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.74 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.6 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.39 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.12 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.55 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.47 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.25 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.06 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.05 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.02 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.91 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.47 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.3 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.18 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.39 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.83 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 93.36 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 93.26 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.02 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 89.2 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 87.58 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 82.72 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 81.42 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.2e-33 Score=282.99 Aligned_cols=284 Identities=19% Similarity=0.283 Sum_probs=248.9
Q ss_pred CCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCE-----EEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 3136568524999879999906999999996899099997899812-----36852479876899998999989999589
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-----KTNLEEHSSLITDVRFSPSMPRLATSSFD 696 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~-----~~~l~~h~~~I~~i~fspdg~~Lasgs~D 696 (913)
..+.+..+ .|...|+|++|+++|++||+|+ ||.|+|||+.+... .....+|...|.+++|+|++++|++++.|
T Consensus 41 ~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d 118 (337)
T d1gxra_ 41 HARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA 118 (337)
T ss_dssp EEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred CCEEEEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECC
T ss_conf 75499987-9999289999989999999997-998899773677633116876404889968999986799889886123
Q ss_pred CEEEEEECCCCC-CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCE
Q ss_conf 909999868999-524884157887379998389990999983799299998579905678517---8107999039997
Q 002519 697 KTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGR 772 (913)
Q Consensus 697 g~I~Iwdl~~~~-~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ 772 (913)
+.|++||+.... .....+..|...+.++.|+|++. ++++++.|+.|++|++.++++...... .+.+++|++++..
T Consensus 119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 197 (337)
T d1gxra_ 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 321111111111111111111111111111111111-1111111111111111111111111111111110123444321
Q ss_pred EEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 9999859919999789970899950799885899992999999999499-299998888998713788403999529999
Q 002519 773 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~ 851 (913)
+++++.|+.+++||+++++.+..+. +...|.+++|+|++++|++++.| .+++||++.+. . .....|...+.+++
T Consensus 198 ~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~---~-~~~~~~~~~i~~v~ 272 (337)
T d1gxra_ 198 LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---K-YQLHLHESCVLSLK 272 (337)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---E-EEECCCSSCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCC-CCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCC---C-CCCCCCCCCCCEEE
T ss_conf 1223566553211111100000246-66615799971530300000025642111111111---0-00012456541699
Q ss_pred EECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 90799989999849819999799991899826689768999927999999996798299909
Q 002519 852 FHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 852 ~sp~g~~li~~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|+|++++|++++.|+.|++||+.+++.+....|...|.+++|+|++++|++|+.||.|+|||
T Consensus 273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd 334 (337)
T d1gxra_ 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEE
T ss_conf 98999999999489969999899997999926999879999927999999990899699997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-32 Score=281.60 Aligned_cols=285 Identities=26% Similarity=0.495 Sum_probs=262.4
Q ss_pred EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 36568524999879999906999999996899099997899812368524798768999989999899995899099998
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwd 703 (913)
.+..+|++|.+.|++++|+|++++|++|+.||+|+|||+.+++.+.++.+|...|.+++|++++.++++++.++.+.+|+
T Consensus 8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 87 (317)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred CCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 84489858888768999938989999993899299998999979999957888677776301111011111111101110
Q ss_pred CCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEECCC
Q ss_conf 68999524884157887379998389990999983799299998579905678517---810799903999799998599
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN 780 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~~~dg 780 (913)
... ......+.+|...+.++.|++++.. +++++.|+.+++|+++++.....+.. ....+.|++++..+++++.|+
T Consensus 88 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 165 (317)
T d1vyhc1 88 FQG-FECIRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 165 (317)
T ss_dssp TTS-SCEEECCCCCSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCC-CCCCCCCCCCCCCCEEEECCCCCCE-EEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCEEEEEECCC
T ss_conf 011-1111110000000000001699855-77652675235751144303468716777630000166799999992798
Q ss_pred EEEEEECCCCEEEEEECCCCCCEEEEEECCC--------------------CCEEEEEECC-EEEEEECCCCCCCCEEEE
Q ss_conf 1999978997089995079988589999299--------------------9999999499-299998888998713788
Q 002519 781 VVSILDAETQACRLSLQGHTKPIDSVCWDPS--------------------GELLASVSED-SVRVWTVGSGSEGECVHE 839 (913)
Q Consensus 781 ~I~i~D~~t~~~~~~l~~h~~~V~si~~spd--------------------g~~l~s~s~d-~I~iwdi~s~~~~~~i~~ 839 (913)
.|++|+..+......+.+|...+.++.|+++ +.++++++.| .|++|+++++ .++..
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~ 242 (317)
T d1vyhc1 166 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMT 242 (317)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEE
T ss_pred EEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCC---CEEEE
T ss_conf 299975125403478824778733799863256411103456303430258861475169978999888999---68899
Q ss_pred EECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 4039995299999079998999984981999979999189-9826689768999927999999996798299909
Q 002519 840 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 840 ~~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+..|...+.+++|+|++.+|++++.|+.|++||+.+++++ .+.+|...|++++|++++++|++|+.||.|+|||
T Consensus 243 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 968899879999879999999997989499999999919999928999889999949999999992899499829
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.2e-32 Score=274.73 Aligned_cols=288 Identities=21% Similarity=0.420 Sum_probs=252.2
Q ss_pred CCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 53136568524999879999906999999996899099997899812368524798768999989999899995899099
Q 002519 621 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 700 (913)
Q Consensus 621 ~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~ 700 (913)
..++..++|++|.+.|+|++|+|++.+||+|+.||+|+|||+.+++.+..+..|...|.+++|+|++.++++++.|+.|+
T Consensus 43 ~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~ 122 (340)
T d1tbga_ 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred CCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEE
T ss_conf 43065279888789888999989999999997899555631021025799724653377567601211443101332010
Q ss_pred EEECCCCC---CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEE
Q ss_conf 99868999---524884157887379998389990999983799299998579905678517---810799903999799
Q 002519 701 VWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 774 (913)
Q Consensus 701 Iwdl~~~~---~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll 774 (913)
+|+..... .....+.+|...+....+..+ . .+.....|.....+............. .+....+.+....++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (340)
T d1tbga_ 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp EEESSSSCSCCCEEEEECCCSSCEEEEEEEET-T-EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEE
T ss_conf 13322221222111001354211011111111-1-111112445432001232211111233101576300124421268
Q ss_pred EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEE--EECCCCCEEEEE
Q ss_conf 99859919999789970899950799885899992999999999499-299998888998713788--403999529999
Q 002519 775 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE--LSCNGNKFHSCV 851 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~--~~~~~~~i~~i~ 851 (913)
++..|+.|++||+++++++..+.+|...|++++|+|++.+|++++.| .|++|+++.. ..+.. ...+...+.+++
T Consensus 201 ~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~~~i~~~~ 277 (340)
T d1tbga_ 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVS 277 (340)
T ss_dssp EEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEE
T ss_pred EEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCC---CCCCCCCCCCCCCCEEEEE
T ss_conf 7605736999999999488999578898589999799899999969996999752122---1111111224457458999
Q ss_pred EECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 9079998999984981999979999189-9826689768999927999999996798299909
Q 002519 852 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 852 ~sp~g~~li~~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|++++.+|++++.|+.|++||+.+++.+ .+.+|.+.|++++|+|++.+|++|+.||.|+|||
T Consensus 278 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf 989999999997979899999999939899848999789999908999999990699799859
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-32 Score=280.04 Aligned_cols=283 Identities=26% Similarity=0.431 Sum_probs=243.2
Q ss_pred EEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEC------------------CCCCCEEEEEECCCCCE
Q ss_conf 852499987999990699999999689909999789981236852------------------47987689999899998
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE------------------EHSSLITDVRFSPSMPR 689 (913)
Q Consensus 628 ~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~------------------~h~~~I~~i~fspdg~~ 689 (913)
...+|.+.|+||+|++||++||+|+ |++|+|||+.+++.+..+. .|...|++++|+|++++
T Consensus 57 ~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~ 135 (388)
T d1erja_ 57 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135 (388)
T ss_dssp EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred EECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 6079999689999999999999994-994899981364057663166544324432111014677898899998899980
Q ss_pred EEEEECCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC--CEEEEEE
Q ss_conf 99995899099998689995248841578873799983899909999837992999985799056785178--1079990
Q 002519 690 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--TAQMRFQ 767 (913)
Q Consensus 690 Lasgs~Dg~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~--~~~i~~s 767 (913)
|++|+.||.|++|+... +..+..+.+|...|.++.|++++.. +++++.++.|++||.++.......... ...+.+.
T Consensus 136 l~s~~~dg~v~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 213 (388)
T d1erja_ 136 LATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 213 (388)
T ss_dssp EEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred CEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 12134441111211111-1111111111111111011111111-112221015654101111110000124544211236
Q ss_pred C-CCCEEEEEECCCEEEEEECCCCEEEEEEC-------CCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCC-----
Q ss_conf 3-99979999859919999789970899950-------799885899992999999999499-299998888998-----
Q 002519 768 P-HLGRYLAAAAENVVSILDAETQACRLSLQ-------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE----- 833 (913)
Q Consensus 768 p-~~~~ll~~~~dg~I~i~D~~t~~~~~~l~-------~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~----- 833 (913)
+ ++..+++++.|+.|++||.+++.....+. +|...|.+++|+|++.+|++++.| .|++||++.+..
T Consensus 214 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 293 (388)
T d1erja_ 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293 (388)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCC
T ss_conf 88787589973898199963455730001024433345778987899997999999999789928987515776432101
Q ss_pred ----CCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEE------ECCCCEEEE
Q ss_conf ----7137884039995299999079998999984981999979999189-98266897689999------279999999
Q 002519 834 ----GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAV------STETGYVAS 902 (913)
Q Consensus 834 ----~~~i~~~~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~------spdg~~Las 902 (913)
..+......|...+.+++|+|++.+|++++.|+.|++||+.+++++ .+.+|.+.|.++++ +|++.+|++
T Consensus 294 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s 373 (388)
T d1erja_ 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373 (388)
T ss_dssp -----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred CCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEE
T ss_conf 34442001101245532789998899999999969897999999999699999688997899998467425899999999
Q ss_pred EECCCCEEEEC
Q ss_conf 96798299909
Q 002519 903 ASHDKFVKLWK 913 (913)
Q Consensus 903 gs~DG~I~IWd 913 (913)
|+.||.|+|||
T Consensus 374 ~s~Dg~I~iW~ 384 (388)
T d1erja_ 374 GSGDCKARIWK 384 (388)
T ss_dssp EETTSEEEEEE
T ss_pred EECCCEEEEEE
T ss_conf 91899799976
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3e-30 Score=261.25 Aligned_cols=276 Identities=16% Similarity=0.251 Sum_probs=223.6
Q ss_pred CCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCE
Q ss_conf 49998799999069999999968990999978998123685247987689999899998999958990999986899952
Q 002519 631 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 710 (913)
Q Consensus 631 ~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~ 710 (913)
.+.+.+.+++++|+|..|+.+. ++.|.+|++.+......+.+|...|++++|+|++++|++|+.||+|+|||+.+....
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCC
T ss_conf 7788759999969989999996-999999999999661797478888899999489996722556736746631011110
Q ss_pred -EEEECCCCCCEEEEEECCCCCEEEEEEEC--CCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCE-EEEEECCCEEE
Q ss_conf -48841578873799983899909999837--99299998579905678517---8107999039997-99998599199
Q 002519 711 -LRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGR-YLAAAAENVVS 783 (913)
Q Consensus 711 -~~~~~~h~~~I~si~fspd~~~ll~sgs~--Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~-ll~~~~dg~I~ 783 (913)
...+..|...|.+++|+|++..++ +++. +..+++|++++++....+.+ .+.+++|+|++.. +++++.|+.|+
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d~~~l~-~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~ 172 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSESKRIA-AVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 172 (311)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEE-EEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 0001343357543323331110001-111221111111111111111111111111111111211101200011221111
Q ss_pred EEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEE-------ECCCCCEEEEEEECC
Q ss_conf 99789970899950799885899992999999999499-2999988889987137884-------039995299999079
Q 002519 784 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL-------SCNGNKFHSCVFHPT 855 (913)
Q Consensus 784 i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~-------~~~~~~i~~i~~sp~ 855 (913)
+||.++.+....+..|...|++++|+|++++|++++.| .|++||+..+. .+..+ .+|...|.+++|+|+
T Consensus 173 i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~---~~~~~~~~~~~~~~h~~~V~~~~~s~~ 249 (311)
T d1nr0a1 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT---KTGVFEDDSLKNVAHSGSVFGLTWSPD 249 (311)
T ss_dssp EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---EEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111112347642212111111111000124464---112221111111002465321024788
Q ss_pred CCEEEEEECCCEEEEEECCCCCEE-EECCCCC---CEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 998999984981999979999189-9826689---768999927999999996798299909
Q 002519 856 YPSLLVIGCYQSLELWNMSENKTM-TLTAHEG---LIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 856 g~~li~~s~dg~I~iwd~~~~~~~-~~~~h~~---~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+.+|++++.|+.|+|||+.+++++ .+..+.. .+.++.| ++.+|++++.||.|++||
T Consensus 250 ~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd 309 (311)
T d1nr0a1 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVN 309 (311)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEE
T ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEE--CCCEEEEEECCCEEEEEE
T ss_conf 999999937996999999999699999799986332999995--199999998999799995
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-29 Score=254.19 Aligned_cols=284 Identities=15% Similarity=0.259 Sum_probs=238.8
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCC--CCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 467889999985609997189920037--997389388730543001111368766745660026899988898865334
Q 002519 540 MPALPHSGTTSKPLMMFGTDGAGTLTS--PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDV 617 (913)
Q Consensus 540 ~~~~~~~~~~~~~~~~~s~dg~~~~~~--~~~~iWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~ 617 (913)
...+.|... ...+.|+++|.+++++ +.++|||...+.....
T Consensus 45 ~~~~~H~~~--V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~----------------------------------- 87 (337)
T d1gxra_ 45 INTLNHGEV--VCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP----------------------------------- 87 (337)
T ss_dssp EEEECCSSC--CCEEEECSSSSEEEEECBSEEEEEETTSTTCCSC-----------------------------------
T ss_pred EEECCCCCC--EEEEEECCCCCEEEEEECCEEEEEECCCCCCCCE-----------------------------------
T ss_conf 998799992--8999998999999999799889977367763311-----------------------------------
Q ss_pred CCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECC--CCCEEEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 5685313656852499987999990699999999689909999789--98123685247987689999899998999958
Q 002519 618 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 695 (913)
Q Consensus 618 ~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~--t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~ 695 (913)
.......+|.+.|.+++|+|++.+|++++.|+.|++||+. +.+....+..|...|.++.|++++.++++++.
T Consensus 88 ------~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 161 (337)
T d1gxra_ 88 ------VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161 (337)
T ss_dssp ------SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred ------EEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ------68764048899689999867998898861233211111111111111111111111111111111111111111
Q ss_pred CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE--CCCEEEEEECCCCEE
Q ss_conf 990999986899952488415788737999838999099998379929999857990567851--781079990399979
Q 002519 696 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRY 773 (913)
Q Consensus 696 Dg~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~--~~~~~i~~sp~~~~l 773 (913)
|+.|++|++.+ +.......+|...|.+++|++++.. +++++.|+.|++||+++++.+..+. ..+.+++|++++..+
T Consensus 162 d~~i~~~~~~~-~~~~~~~~~~~~~v~~l~~s~~~~~-~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l 239 (337)
T d1gxra_ 162 DGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGTK-LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL 239 (337)
T ss_dssp TSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEE
T ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCCC
T ss_conf 11111111111-1111111111111110123444321-122356655321111110000024666615799971530300
Q ss_pred EEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 999859919999789970899950799885899992999999999499-2999988889987137884039995299999
Q 002519 774 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 852 (913)
Q Consensus 774 l~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~ 852 (913)
++++.++.+++||.++..... ...|...|++++|+|++++|++++.| .|++||+.++ ..+..+. |...|.+++|
T Consensus 240 ~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~---~~~~~~~-~~~~v~~~~~ 314 (337)
T d1gxra_ 240 AVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSK-ESSSVLSCDI 314 (337)
T ss_dssp EEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEE-CSSCEEEEEE
T ss_pred CEECCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCC---CEEEECC-CCCCEEEEEE
T ss_conf 000025642111111111000-0124565416999899999999948996999989999---7999926-9998799999
Q ss_pred ECCCCEEEEEECCCEEEEEEC
Q ss_conf 079998999984981999979
Q 002519 853 HPTYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 853 sp~g~~li~~s~dg~I~iwd~ 873 (913)
+|++++|++++.|+.|+|||+
T Consensus 315 s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 315 SVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CTTSCEEEEEETTSCEEEEEE
T ss_pred ECCCCEEEEEECCCEEEEEEE
T ss_conf 279999999908996999977
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.3e-30 Score=260.93 Aligned_cols=277 Identities=15% Similarity=0.224 Sum_probs=190.2
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCC--EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC-
Q ss_conf 99987999990699999999689909999789981--236852479876899998999989999589909999868999-
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG- 708 (913)
Q Consensus 632 H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~--~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~- 708 (913)
..++|+|++|+|||++||+|+.|+.|+||++.+++ .+..+++|...|++++|+|++++|++++.|++|+|||+.+..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCC
T ss_conf 99883899998999999999488989999888997899999558899888999979999999997999399986203321
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEE-------EECCCEEEEEECCCCEEEEEECCCE
Q ss_conf 524884157887379998389990999983799299998579905678-------5178107999039997999985991
Q 002519 709 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-------FKGGTAQMRFQPHLGRYLAAAAENV 781 (913)
Q Consensus 709 ~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~-------~~~~~~~i~~sp~~~~ll~~~~dg~ 781 (913)
.....+.+|...|.+++|+|++. .+++++.|+.|++|++........ +...+.++.|+|++..+++++.|+.
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~ 164 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCE
T ss_conf 10012232211000111111121-10000025763025442033433111001011122211111111111000134767
Q ss_pred EEEEECCCC------------------EEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEEC
Q ss_conf 999978997------------------0899950799885899992999999999499-299998888998713788403
Q 002519 782 VSILDAETQ------------------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 842 (913)
Q Consensus 782 I~i~D~~t~------------------~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~ 842 (913)
|++|+.... ..+.....|...|.+++|+|++++|++++.| .|++||+..+ ..+..+..
T Consensus 165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~ 241 (371)
T d1k8kc_ 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVATLAS 241 (371)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEEEEC
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECC---CCEEEEEC
T ss_conf 999840157643100122111111110112440476674789875123321000014786058864101---21000001
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCEEEEEE--CCCCCEE----------------------------------------E
Q ss_conf 999529999907999899998498199997--9999189----------------------------------------9
Q 002519 843 NGNKFHSCVFHPTYPSLLVIGCYQSLELWN--MSENKTM----------------------------------------T 880 (913)
Q Consensus 843 ~~~~i~~i~~sp~g~~li~~s~dg~I~iwd--~~~~~~~----------------------------------------~ 880 (913)
|..++.+++|++++.+|+ ++.|+.+++|. ....... .
T Consensus 242 ~~~~v~s~~fs~d~~~la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
T d1k8kc_ 242 ETLPLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 320 (371)
T ss_dssp SSCCEEEEEEEETTEEEE-EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred CCCCCEEEEECCCCCEEE-EECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEE
T ss_conf 466520365469997999-9819926787760898628872020676542124622001685065205871245566141
Q ss_pred ECCCCCCEEEEEEECCC----CEEEEEECCCCEEEEC
Q ss_conf 82668976899992799----9999996798299909
Q 002519 881 LTAHEGLIAALAVSTET----GYVASASHDKFVKLWK 913 (913)
Q Consensus 881 ~~~h~~~V~~l~~spdg----~~Lasgs~DG~I~IWd 913 (913)
...|.+.|+++++.+.+ ..|+|++.||.|+|||
T Consensus 321 ~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 321 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred CCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEE
T ss_conf 2555698899999489986567999991899399996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.6e-29 Score=255.25 Aligned_cols=246 Identities=17% Similarity=0.274 Sum_probs=211.6
Q ss_pred EEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCE--EEEECCCCCCEEEEEECCCCCEEEEEEC--CCEEE
Q ss_conf 6568524999879999906999999996899099997899812--3685247987689999899998999958--99099
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSF--DKTVR 700 (913)
Q Consensus 625 ~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~--~~~l~~h~~~I~~i~fspdg~~Lasgs~--Dg~I~ 700 (913)
....+.+|.+.|+|++|+|+|++||+|+.||+|+|||+.+... ...+..|...|.+++|++++++|++++. +..++
T Consensus 50 ~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~ 129 (311)
T d1nr0a1 50 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 129 (311)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred EEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 61797478888899999489996722556736746631011110000134335754332333111000111122111111
Q ss_pred EEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEE
Q ss_conf 99868999524884157887379998389990999983799299998579905678517---810799903999799998
Q 002519 701 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~~ 777 (913)
||++++ +.....+.+|...|.+++|+|+++.++++|+.|+.|++||+++.++...+.. .+.++.|+|++..+++++
T Consensus 130 v~~~~~-~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~ 208 (311)
T d1nr0a1 130 VFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 208 (311)
T ss_dssp EEETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 111111-1111111111111111111211101200011221111111111111111111111111123476422121111
Q ss_pred CCCEEEEEECCCCEEEEEEC-------CCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCC-CEE
Q ss_conf 59919999789970899950-------799885899992999999999499-299998888998713788403999-529
Q 002519 778 AENVVSILDAETQACRLSLQ-------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN-KFH 848 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~-------~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~-~i~ 848 (913)
.|+.|++||.+++.....+. +|...|++++|+|++++|++++.| .|+|||++++ +++.++..+.. ...
T Consensus 209 ~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~---~~~~~l~~~~~~~~~ 285 (311)
T d1nr0a1 209 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL---KVEKTIPVGTRIEDQ 285 (311)
T ss_dssp TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSGGGC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCC---CEEEEEECCCCCCCE
T ss_conf 11111000124464112221111111002465321024788999999937996999999999---699999799986332
Q ss_pred EEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 99990799989999849819999799
Q 002519 849 SCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 849 ~i~~sp~g~~li~~s~dg~I~iwd~~ 874 (913)
.+.+.+++..+++++.||.|++||.+
T Consensus 286 ~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 286 QLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEEEECCCEEEEEECCCEEEEEECC
T ss_conf 99999519999999899979999588
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.6e-30 Score=258.98 Aligned_cols=285 Identities=17% Similarity=0.192 Sum_probs=231.8
Q ss_pred EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 3656852499987999990699999999689909999789981236852-479876899998999989999589909999
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVW 702 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~-~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iw 702 (913)
+..+.+.||.+.|+|++|+||+++|++|+.||+|++||+.+++.+..+. .|...|++++|+|++. +++++.|+.+++|
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~ 81 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVV 81 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEE
T ss_pred CCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCE-EECCCCEEEEEEE
T ss_conf 613684888878289999799999999908992999999999688998378877489988403311-2102310268873
Q ss_pred ECCCCCC--EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEECCC
Q ss_conf 8689995--24884157887379998389990999983799299998579905678517810799903999799998599
Q 002519 703 DADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN 780 (913)
Q Consensus 703 dl~~~~~--~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ll~~~~dg 780 (913)
++..... .......+...+.+++|++++..++ + +.++.+++|+.... ..........++.|++++..+++++.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~-~-~~~~~i~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~g~~dg 158 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV-A-ACYKHIAIYSHGKL-TEVPISYNSSCVALSNDKQFVAVGGQDS 158 (299)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE-E-EESSEEEEEETTEE-EEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1677620111000111134432100112211111-2-22222211111111-1101111233221111111111111111
Q ss_pred EEEEEECCCCEEEE-EECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCE
Q ss_conf 19999789970899-950799885899992999999999499-2999988889987137884039995299999079998
Q 002519 781 VVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 858 (913)
Q Consensus 781 ~I~i~D~~t~~~~~-~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 858 (913)
.|++||+++..... ....|...|++++|+|++.+|++++.+ .|++||+.++........+..|...+.+++|+|++.+
T Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 238 (299)
T d1nr0a2 159 KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238 (299)
T ss_dssp EEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111111111111111111111111111111111111111111111111124666451
Q ss_pred EEEEECCCEEEEEECCCCCEE---EECCC-CCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 999984981999979999189---98266-89768999927999999996798299909
Q 002519 859 LLVIGCYQSLELWNMSENKTM---TLTAH-EGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 859 li~~s~dg~I~iwd~~~~~~~---~~~~h-~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
|++++.|+.|++||+.+.... ....| ...|.++.| +++++|++++.||.|+|||
T Consensus 239 l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd 296 (299)
T d1nr0a2 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN 296 (299)
T ss_dssp EEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred EEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEE-CCCCEEEEEECCCEEEEEE
T ss_conf 388828997999989999731489834898896899997-7989999992899799994
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-28 Score=246.06 Aligned_cols=291 Identities=22% Similarity=0.315 Sum_probs=237.9
Q ss_pred CCEEEEECCCCCCCC--CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 560999718992003--799738938873054300111136876674566002689998889886533456853136568
Q 002519 551 KPLMMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 628 (913)
Q Consensus 551 ~~~~~~s~dg~~~~~--~~~~~iWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~ 628 (913)
...+.|++||.++++ ++.++|||..+++....+....... .. ........
T Consensus 65 V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~---~~-------------------------~~~~~~~~ 116 (388)
T d1erja_ 65 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAAN---KD-------------------------PENLNTSS 116 (388)
T ss_dssp CCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-------------------------------------------
T ss_pred EEEEEECCCCCEEEEEECCEEEEEEECCCCEEEEECCCCCCC---CC-------------------------CCCCCCCC
T ss_conf 899999999999999949948999813640576631665443---24-------------------------43211101
Q ss_pred EECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 52499987999990699999999689909999789981236852479876899998999989999589909999868999
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 708 (913)
Q Consensus 629 l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~ 708 (913)
...|...|++++|++++++|++|+.||.|++|+...++.+..+.+|...|.++.|++++..+++++.++.|++||..+ .
T Consensus 117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~ 195 (388)
T d1erja_ 117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-G 195 (388)
T ss_dssp --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-T
T ss_pred CCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC-C
T ss_conf 467789889999889998012134441111211111111111111111111101111111111222101565410111-1
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE----------CCCEEEEEECCCCEEEEEEC
Q ss_conf 52488415788737999838999099998379929999857990567851----------78107999039997999985
Q 002519 709 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------GGTAQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 709 ~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~----------~~~~~i~~sp~~~~ll~~~~ 778 (913)
....... +.....++.+.+....+|++++.|+.|++|++.++.....+. ..+.++.|++++..+++++.
T Consensus 196 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 274 (388)
T d1erja_ 196 QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274 (388)
T ss_dssp EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCCCC-CCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 1100001-245442112368878758997389819996345573000102443334577898789999799999999978
Q ss_pred CCEEEEEECCCCE------------EEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCC
Q ss_conf 9919999789970------------899950799885899992999999999499-299998888998713788403999
Q 002519 779 ENVVSILDAETQA------------CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 845 (913)
Q Consensus 779 dg~I~i~D~~t~~------------~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~ 845 (913)
|+.|++||+++.. +......|...|.+++|+|++++|++++.| .|++||+.++ +++..+..|..
T Consensus 275 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~l~~H~~ 351 (388)
T d1erja_ 275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRN 351 (388)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCC---CEEEEEECCCC
T ss_conf 992898751577643210134442001101245532789998899999999969897999999999---69999968899
Q ss_pred CEEEEEE------ECCCCEEEEEECCCEEEEEECC
Q ss_conf 5299999------0799989999849819999799
Q 002519 846 KFHSCVF------HPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 846 ~i~~i~~------sp~g~~li~~s~dg~I~iwd~~ 874 (913)
.|.++++ +|++.+|++++.|+.|+||+++
T Consensus 352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEE
T ss_conf 78999984674258999999999189979997621
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-27 Score=239.77 Aligned_cols=283 Identities=18% Similarity=0.314 Sum_probs=216.0
Q ss_pred CCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 31365685249998799999069999999968990999978998123685247987689999899998999958990999
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~I 701 (913)
.++..+.+++|.+.|.+ +++++|++||+|+.||+|+|||+.+++++.++.+|...|.+++|+++ +|++++.|+.+++
T Consensus 5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~ 81 (342)
T d2ovrb2 5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKV 81 (342)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEE
T ss_pred CCCCCEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCEECCCCCC
T ss_conf 88758898886875099-99978999999918990999989999799999488999899994798--6321000001111
Q ss_pred EECCCCCCEEEEECCCCCCEEE--------------------------------------EEECCCCCEEEEEEECCCCE
Q ss_conf 9868999524884157887379--------------------------------------99838999099998379929
Q 002519 702 WDADNPGYSLRTFMGHSASVMS--------------------------------------LDFHPNKDDLICSCDGDGEI 743 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~I~s--------------------------------------i~fspd~~~ll~sgs~Dg~I 743 (913)
|+... .........+...+.. ..+..... ++++++.|+.|
T Consensus 82 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i 159 (342)
T d2ovrb2 82 WNAET-GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR-RVVSGAYDFMV 159 (342)
T ss_dssp EETTT-TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSS-CEEEEETTSCE
T ss_pred CCCCC-CCCEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEECCCCC-EEEEECCCCEE
T ss_conf 11110-00000012333047652024652212344403787403556300111001111000001333-02433589869
Q ss_pred EEEECCCCEEEEEEECCC-EEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-
Q ss_conf 999857990567851781-079990399979999859919999789970899950799885899992999999999499-
Q 002519 744 RYWSINNGSCTRVFKGGT-AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED- 821 (913)
Q Consensus 744 ~iwdi~~~~~~~~~~~~~-~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d- 821 (913)
++||.+...++..+.++. ....+..++..+++++.|+.|++||.+..+++..+.+|...+.++.++ +++|++++.|
T Consensus 160 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~ 237 (342)
T d2ovrb2 160 KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADS 237 (342)
T ss_dssp EEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTS
T ss_pred EEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEECC--CCEEEEECCCC
T ss_conf 9952523436678727544421006899999999589939995255653656741665320577068--99999974898
Q ss_pred EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EE-----CCCCCCEEEEEEEC
Q ss_conf 2999988889987137884039995299999079998999984981999979999189-98-----26689768999927
Q 002519 822 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL-----TAHEGLIAALAVST 895 (913)
Q Consensus 822 ~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~-~~-----~~h~~~V~~l~~sp 895 (913)
.|++||+........+.....|...+.++.++ +.++++++.|+.|++||+.+++.+ .+ .+|...|++++|+|
T Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~ 315 (342)
T d2ovrb2 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 315 (342)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred EEEEEECCCCCCCCCCCCCCEEEECEEECCCC--CCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECC
T ss_conf 89998655442211122100011010000137--9844999089989999999997989986234789889789999879
Q ss_pred CCCEEEEEECCCC----EEEEC
Q ss_conf 9999999967982----99909
Q 002519 896 ETGYVASASHDKF----VKLWK 913 (913)
Q Consensus 896 dg~~Lasgs~DG~----I~IWd 913 (913)
++.+|++|+.||+ |++||
T Consensus 316 ~~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 316 TKLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp SEEEEEEECSSSSSCCEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEEEE
T ss_conf 9989999968999704899993
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.2e-26 Score=231.46 Aligned_cols=271 Identities=23% Similarity=0.467 Sum_probs=238.3
Q ss_pred CCEEEEECCCCCCCC---CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 560999718992003---79973893887305430011113687667456600268999888988653345685313656
Q 002519 551 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 627 (913)
Q Consensus 551 ~~~~~~s~dg~~~~~---~~~~~iWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~ 627 (913)
...+.|+|++..+++ ++.++|||.++++ .+.
T Consensus 20 I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~----------------------------------------------~~~ 53 (317)
T d1vyhc1 20 VTRVIFHPVFSVMVSASEDATIKVWDYETGD----------------------------------------------FER 53 (317)
T ss_dssp EEEEEECSSSSEEEEEESSSCEEEEETTTCC----------------------------------------------CCE
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCC----------------------------------------------EEE
T ss_conf 6899993898999999389929999899997----------------------------------------------999
Q ss_pred EEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 85249998799999069999999968990999978998123685247987689999899998999958990999986899
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 707 (913)
Q Consensus 628 ~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~ 707 (913)
.+++|.+.|.+++|++++.+++++..++.+.+|+.........+..|...+.++.|++++..+++++.|+.+++|++++
T Consensus 54 ~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~- 132 (317)
T d1vyhc1 54 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT- 132 (317)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-
T ss_pred EEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCC-
T ss_conf 9957888677776301111011111111101110011111111000000000000169985577652675235751144-
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC---CEEEEEECC---------------
Q ss_conf 95248841578873799983899909999837992999985799056785178---107999039---------------
Q 002519 708 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPH--------------- 769 (913)
Q Consensus 708 ~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~---~~~i~~sp~--------------- 769 (913)
+.....+.+|...+.+++|++++. ++++++.|+.|++|++.+......+..+ +..+.+.++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 211 (317)
T d1vyhc1 133 GYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 211 (317)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred CEEEEEECCCCCCCEEEECCCCCC-EEEEEECCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEE
T ss_conf 303468716777630000166799-9999927982999751254034788247787337998632564111034563034
Q ss_pred -----CCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECC
Q ss_conf -----9979999859919999789970899950799885899992999999999499-2999988889987137884039
Q 002519 770 -----LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 843 (913)
Q Consensus 770 -----~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~ 843 (913)
+..+++++.|+.|++||.++++++.++.+|...|.+++|+|++++|++++.| .|++||+.++ +++..+..|
T Consensus 212 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h 288 (317)
T d1vyhc1 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAH 288 (317)
T ss_dssp -----CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECC
T ss_pred EECCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC---CEEEEECCC
T ss_conf 30258861475169978999888999688999688998799998799999999979894999999999---199999289
Q ss_pred CCCEEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 99529999907999899998498199997
Q 002519 844 GNKFHSCVFHPTYPSLLVIGCYQSLELWN 872 (913)
Q Consensus 844 ~~~i~~i~~sp~g~~li~~s~dg~I~iwd 872 (913)
...|++++|+|++.+|++++.|+.|+|||
T Consensus 289 ~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 289 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 99889999949999999992899499829
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.1e-26 Score=231.80 Aligned_cols=276 Identities=20% Similarity=0.317 Sum_probs=215.6
Q ss_pred EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCC--CEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 36568524999879999906999999996899099997899812368524798--7689999899998999958990999
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS--LITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~--~I~~i~fspdg~~Lasgs~Dg~I~I 701 (913)
+.+..+++|.+.|++++|++++ +|++|+.|++|++|+............... .+..+.+.+++.++++++.|+.|++
T Consensus 44 ~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i 122 (355)
T d1nexb2 44 KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122 (355)
T ss_dssp EEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCC-EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEE
T ss_conf 3999997899988999986999-999996452443211111111111100111111111111123220455438886899
Q ss_pred EECCCCCCE----------------------EEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC
Q ss_conf 986899952----------------------4884157887379998389990999983799299998579905678517
Q 002519 702 WDADNPGYS----------------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 759 (913)
Q Consensus 702 wdl~~~~~~----------------------~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~ 759 (913)
|++...... ......|...+.+... ++. +++++..|+.|++||+++++.+..+..
T Consensus 123 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~~~~~~~d~~i~~~d~~~~~~~~~~~~ 199 (355)
T d1nexb2 123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG--HGN-IVVSGSYDNTLIVWDVAQMKCLYILSG 199 (355)
T ss_dssp EECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCCCCCCCC--CCC-EEEEECCCCEEEEEECCCCCCEEEEEC
T ss_conf 98567730012465200010000011234012101100222100002--563-344211442044430131100011000
Q ss_pred ---CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCC
Q ss_conf ---81079990399979999859919999789970899950799885899992999999999499-29999888899871
Q 002519 760 ---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 835 (913)
Q Consensus 760 ---~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~ 835 (913)
....+.+++.+..+++++.|+.|++||.+++..+..+.+|...|.+++|+ +++|++++.| .|++||+++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--- 274 (355)
T d1nexb2 200 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS--- 274 (355)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC---
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCCCCCCCCCCCCC---
T ss_conf 12332111111210021012456368763012211111111111111111232--1003332011111111111111---
Q ss_pred EEEEEECCCCCEEEE-EEECCCCEEEEEECCCEEEEEECCCCCEE--EECCCCCCEEEEEEECCCCEEEEEECCCCEEEE
Q ss_conf 378840399952999-99079998999984981999979999189--982668976899992799999999679829990
Q 002519 836 CVHELSCNGNKFHSC-VFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 912 (913)
Q Consensus 836 ~i~~~~~~~~~i~~i-~~sp~g~~li~~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IW 912 (913)
. .+..|...+..+ .+++++. +++++.|+.|++||+++++++ .+.+|...|.+++|+++ .++++++.||.++||
T Consensus 275 ~--~~~~~~~~~~~~~~~~~~~~-~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~ 350 (355)
T d1nexb2 275 R--KFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLE 350 (355)
T ss_dssp E--EEEEECTTCCCCCEEEECSS-EEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred E--ECCCCCCCCEEEEEECCCCC-EEEEEECCEEEEEECCCCCEEEEEECCCCCCEEEEEECCC-EEEEEEECCCCEEEE
T ss_conf 0--00124688229999849998-9999809979999999997988884589998999998399-199999898909999
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2e-26 Score=229.52 Aligned_cols=277 Identities=20% Similarity=0.335 Sum_probs=223.2
Q ss_pred EEEEEECCCCCE-EEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 656852499987-9999906999999996899099997899812368524798768999989999899995899099998
Q 002519 625 EANSVRASTSKV-ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 625 ~~~~l~~H~~~V-~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwd 703 (913)
+..++++|.+.| +|++| ++++||+|+.||+|+|||+.+++.+.++.+|.+.|++++|+++ .+|++++.|+.|++|+
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred CCEEECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCC
T ss_conf 758889837886999998--8999999918990999989999399999789998899998699-9999996452443211
Q ss_pred CCCCCCEEEEECCCCC--CEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE-----------------------
Q ss_conf 6899952488415788--737999838999099998379929999857990567851-----------------------
Q 002519 704 ADNPGYSLRTFMGHSA--SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------------------- 758 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~--~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~----------------------- 758 (913)
+.. ............ .+..+.+.+++ .++++++.|+.|++|+++.........
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
T d1nexb2 81 IKK-GCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 158 (355)
T ss_dssp TTT-TEEEEEECCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEE
T ss_conf 111-1111111001111111111111232-20455438886899985677300124652000100000112340121011
Q ss_pred CC-CEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCE
Q ss_conf 78-1079990399979999859919999789970899950799885899992999999999499-299998888998713
Q 002519 759 GG-TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 836 (913)
Q Consensus 759 ~~-~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~ 836 (913)
.+ .....+.+++..++.+..|+.|++||.++.+.+..+.++...+.++.|++++.++++++.| .|++|++.++ .+
T Consensus 159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~ 235 (355)
T d1nexb2 159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---EL 235 (355)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC---CE
T ss_pred ECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCC---CC
T ss_conf 002221000025633442114420444301311000110001233211111121002101245636876301221---11
Q ss_pred EEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEE-EEECCCCEEEEEECCCCEEEEC
Q ss_conf 7884039995299999079998999984981999979999189982668976899-9927999999996798299909
Q 002519 837 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAAL-AVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 837 i~~~~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l-~~spdg~~Lasgs~DG~I~IWd 913 (913)
+..+..|...+.++.+++ ++|++++.|+.|++||+.+..... ..|...+.++ .+++++.+|++| .||.|+|||
T Consensus 236 ~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd 309 (355)
T d1nexb2 236 MYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF-SYHHTNLSAITTFYVSDNILVSG-SENQFNIYN 309 (355)
T ss_dssp EEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE-EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCC--CEEEEEECCCCCCCCCCCCCCEEC-CCCCCCCEEEEEECCCCCEEEEE-ECCEEEEEE
T ss_conf 111111111111112321--003332011111111111111000-12468822999984999899998-099799999
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=5.6e-27 Score=234.12 Aligned_cols=280 Identities=15% Similarity=0.180 Sum_probs=219.9
Q ss_pred CCEEEEECCCCCCCCC---CCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 5609997189920037---9973893887305430011113687667456600268999888988653345685313656
Q 002519 551 KPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 627 (913)
Q Consensus 551 ~~~~~~s~dg~~~~~~---~~~~iWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~ 627 (913)
...++|++||..+++. +.++|||...+ .+..+.
T Consensus 10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~--------------------------------------------~~~~~~ 45 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGN--------------------------------------------KWVQVH 45 (371)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETT--------------------------------------------EEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCC--------------------------------------------CEEEEE
T ss_conf 389999899999999948898999988899--------------------------------------------789999
Q ss_pred EEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCE--EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 8524999879999906999999996899099997899812--36852479876899998999989999589909999868
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 705 (913)
Q Consensus 628 ~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~--~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl~ 705 (913)
.+++|.+.|++++|+|++++|++++.|++|+|||+.+... ...+.+|...|++++|+|+++.|++++.|++|++|+++
T Consensus 46 ~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~ 125 (371)
T d1k8kc_ 46 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125 (371)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEE
T ss_conf 95588998889999799999999979993999862033211001223221100011111112110000025763025442
Q ss_pred CCCCE---EEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCE------------------EEEEEE---CCC
Q ss_conf 99952---488415788737999838999099998379929999857990------------------567851---781
Q 002519 706 NPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------------------CTRVFK---GGT 761 (913)
Q Consensus 706 ~~~~~---~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~------------------~~~~~~---~~~ 761 (913)
..... ......|...|.+++|+|++. +|++++.|+.|++|++.... ...... ..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 204 (371)
T d1k8kc_ 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 204 (371)
T ss_dssp TTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCE
T ss_conf 03343311100101112221111111111-10001347679998401576431001221111111101124404766747
Q ss_pred EEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCCCCC------
Q ss_conf 07999039997999985991999978997089995079988589999299999999949929999888899871------
Q 002519 762 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE------ 835 (913)
Q Consensus 762 ~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d~I~iwdi~s~~~~~------ 835 (913)
..++|+|++..+++++.|+.|++||..++..+..+..|..+|.+++|++++.+|+++.++.+++|.........
T Consensus 205 ~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~ 284 (371)
T d1k8kc_ 205 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRL 284 (371)
T ss_dssp EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCC
T ss_pred EEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEEEE
T ss_conf 89875123321000014786058864101210000014665203654699979999819926787760898628872020
Q ss_pred --------------------------------EEEEEECCCCCEEEEEEECCC----CEEEEEECCCEEEEEECCC
Q ss_conf --------------------------------378840399952999990799----9899998498199997999
Q 002519 836 --------------------------------CVHELSCNGNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSE 875 (913)
Q Consensus 836 --------------------------------~i~~~~~~~~~i~~i~~sp~g----~~li~~s~dg~I~iwd~~~ 875 (913)
.......|.+.|.++++.+.+ ..|++++.||.|++||+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 285 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred CCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCC
T ss_conf 6765421246220016850652058712455661412555698899999489986567999991899399996986
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.7e-26 Score=227.26 Aligned_cols=247 Identities=17% Similarity=0.266 Sum_probs=158.0
Q ss_pred EEEEECCC-CCEEEEEEEC--CCCEEEEEECCCCEEEEECCCCCEE--------EEECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 56852499-9879999906--9999999968990999978998123--------68524798768999989999899995
Q 002519 626 ANSVRAST-SKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSK--------TNLEEHSSLITDVRFSPSMPRLATSS 694 (913)
Q Consensus 626 ~~~l~~H~-~~V~~i~fsp--dg~~Lasgs~Dg~V~iwd~~t~~~~--------~~l~~h~~~I~~i~fspdg~~Lasgs 694 (913)
+..+.+|. ..|++++|+| ++.+||+|+.||+|+|||+...+.. ..+..|...|.+++|++++++|++++
T Consensus 55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 134 (325)
T d1pgua1 55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 134 (325)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEE
T ss_conf 28990789998899998117999799999489977985405886215651002541136567377999899988220100
Q ss_pred C--CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCE
Q ss_conf 8--99099998689995248841578873799983899909999837992999985799056785178107999039997
Q 002519 695 F--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGR 772 (913)
Q Consensus 695 ~--Dg~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ 772 (913)
. ++.+++|+.++ +..+..+.+|...|.+++|+|++..++++++.|+.|++|+....+....+.
T Consensus 135 ~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~-------------- 199 (325)
T d1pgua1 135 EGRDNFGVFISWDS-GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-------------- 199 (325)
T ss_dssp CCSSCSEEEEETTT-CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC--------------
T ss_pred CCCCCEEEEEEECC-CCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECC--------------
T ss_conf 12440478885023-311001200123432111123432068886211122111122110000000--------------
Q ss_pred EEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCC-CCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 999985991999978997089995079988589999299-9999999499-29999888899871378840399952999
Q 002519 773 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 850 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd-g~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~i~~i 850 (913)
.+..|...|.+++|+|+ +.+|++++.| .|++||++++ .++..+..|...+..+
T Consensus 200 ----------------------~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~---~~~~~l~~~~~~v~~~ 254 (325)
T d1pgua1 200 ----------------------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG---EFLKYIEDDQEPVQGG 254 (325)
T ss_dssp ----------------------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC---CEEEECCBTTBCCCSC
T ss_pred ----------------------CCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCC---CCCCCCCCCCCCCCCC
T ss_conf ----------------------015777752776303453100001123321013430012---2211111111111110
Q ss_pred EEE---CCCCEEEEEECCCEEEEEECCCCCEE-EECCCCC--CEE--EEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 990---79998999984981999979999189-9826689--768--999927999999996798299909
Q 002519 851 VFH---PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG--LIA--ALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 851 ~~s---p~g~~li~~s~dg~I~iwd~~~~~~~-~~~~h~~--~V~--~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.|+ +++.+|++++.|+.|+|||+.+++++ .+..|.. .+. ++.|.+ +.+|++++.||.|+|||
T Consensus 255 ~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG-NGRIISLSLDGTLNFYE 324 (325)
T ss_dssp EEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEE-TTEEEEEETTSCEEEEE
T ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECC-CCEEEEEECCCEEEEEE
T ss_conf 00000368999999958993999999999788999954874067699999889-99999997999999997
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=8.7e-25 Score=215.89 Aligned_cols=275 Identities=22% Similarity=0.424 Sum_probs=218.9
Q ss_pred CCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 31365685249998799999069999999968990999978998123685247987689999899998999958990999
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~I 701 (913)
.++.+.....|...|+|++| |+++||+|+.||+|+|||+.+++.+.++.+|...|++++| ++++|++++.|+.|++
T Consensus 4 ~~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~ 79 (293)
T d1p22a2 4 SLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV 79 (293)
T ss_dssp CCCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred EEEEEECCCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCC
T ss_conf 67898432899998899987--6999999928993999999999199999267787763423--6300210011101100
Q ss_pred EECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEE---EEECCC-EEEEEECCCCEEEEEE
Q ss_conf 986899952488415788737999838999099998379929999857990567---851781-0799903999799998
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VFKGGT-AQMRFQPHLGRYLAAA 777 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~---~~~~~~-~~i~~sp~~~~ll~~~ 777 (913)
|++.. +............... +..... .++++..++.+++|+........ .+..+. ....+......+++++
T Consensus 80 ~~~~~-~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s 155 (293)
T d1p22a2 80 WDVNT-GEMLNTLIHHCEAVLH--LRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS 155 (293)
T ss_dssp EESSS-CCEEEEECCCCSCEEE--EECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred CCCCC-CCCCCCCCCCCCCCCC--CCCCCC-CEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 00024-6410011111100001--111110-0000135663068613445444212100011354311000002201106
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 59919999789970899950799885899992999999999499-29999888899871378840399952999990799
Q 002519 778 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g 856 (913)
.|+.|++||.++.+.+..+.++...+..+.++ +.++++++.| .|++||+++. ..+..+..+...+.. +.+++
T Consensus 156 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~--~~~~~ 228 (293)
T d1p22a2 156 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRC--IRFDN 228 (293)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEE--EECCS
T ss_pred CCCCEEEECCCCCCEEEEECCCCCCCCCCCCC--CCEEEEECCCCEEEEEECCCC---EEEEEECCCCEEEEE--CCCCC
T ss_conf 99860410078883889971554453221689--875887658998999866556---146652143100000--14541
Q ss_pred CEEEEEECCCEEEEEECCC---------CC-EEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 9899998498199997999---------91-899826689768999927999999996798299909
Q 002519 857 PSLLVIGCYQSLELWNMSE---------NK-TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 857 ~~li~~s~dg~I~iwd~~~---------~~-~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.+|++++.|+.|++||+.. .. ...+.+|.+.|++++|+ +.+|++++.||+|+|||
T Consensus 229 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC--CCEEEEEECCCEEEEEC
T ss_conf 079998679979999888886444567754557845889988999971--99999992299899959
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=8.3e-24 Score=207.76 Aligned_cols=270 Identities=23% Similarity=0.414 Sum_probs=228.2
Q ss_pred CCEEEEECCCCCCCC---CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 560999718992003---79973893887305430011113687667456600268999888988653345685313656
Q 002519 551 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 627 (913)
Q Consensus 551 ~~~~~~s~dg~~~~~---~~~~~iWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~ 627 (913)
...+.|++++.++++ ++.++|||..+++ .+.
T Consensus 58 I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~----------------------------------------------~~~ 91 (340)
T d1tbga_ 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTN----------------------------------------------KVH 91 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTE----------------------------------------------EEE
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCE----------------------------------------------EEE
T ss_conf 8899998999999999789955563102102----------------------------------------------579
Q ss_pred EEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCC----CEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 85249998799999069999999968990999978998----12368524798768999989999899995899099998
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 703 (913)
Q Consensus 628 ~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~----~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwd 703 (913)
.+..|...|++++|+|++.++++++.|+.|++|+.... .....+.+|...+....+.. +..++....|..+..|.
T Consensus 92 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 170 (340)
T d1tbga_ 92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWD 170 (340)
T ss_dssp EEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEE
T ss_pred EEECCCCCEEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC
T ss_conf 97246533775676012114431013320101332222122211100135421101111111-11111112445432001
Q ss_pred CCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEECCC
Q ss_conf 68999524884157887379998389990999983799299998579905678517---810799903999799998599
Q 002519 704 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN 780 (913)
Q Consensus 704 l~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~~~dg 780 (913)
... .........+...+..+.+.+... ++++++.|+.|++||+++++++..+.+ .+.+++|+|++..+++++.|+
T Consensus 171 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~ 248 (340)
T d1tbga_ 171 IET-GQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp TTT-TEEEEEEECCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCC-CCCCCCCCCCCEEEEEECCCCCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 232-211111233101576300124421-268760573699999999948899957889858999979989999996999
Q ss_pred EEEEEECCCCEEEEEEC--CCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf 19999789970899950--799885899992999999999499-299998888998713788403999529999907999
Q 002519 781 VVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 857 (913)
Q Consensus 781 ~I~i~D~~t~~~~~~l~--~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g~ 857 (913)
.|++||.+....+..+. .+...|.+++|++++++|++++.| .|++||+.++ .++..+..|...|.+++|+|++.
T Consensus 249 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~H~~~V~~l~~s~d~~ 325 (340)
T d1tbga_ 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGM 325 (340)
T ss_dssp CEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC---CEEEEECCCCCCEEEEEEECCCC
T ss_conf 699975212211111112244574589999899999999979798999999999---39899848999789999908999
Q ss_pred EEEEEECCCEEEEEE
Q ss_conf 899998498199997
Q 002519 858 SLLVIGCYQSLELWN 872 (913)
Q Consensus 858 ~li~~s~dg~I~iwd 872 (913)
+|++++.|+.|+|||
T Consensus 326 ~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 326 AVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEECCCCEEEEEC
T ss_conf 999990699799859
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.3e-25 Score=222.81 Aligned_cols=269 Identities=12% Similarity=0.177 Sum_probs=222.6
Q ss_pred CCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 31365685249998799999069999999968990999978998123685247987689999899998999958990999
Q 002519 622 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 701 (913)
Q Consensus 622 ~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~I 701 (913)
.-++++++++|.+.|+|++|++ |++|+.||+|++||+.++ ..+|...|.++.|+++ ..+++++.|++|++
T Consensus 2 ~~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~ 71 (287)
T d1pgua2 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKV 71 (287)
T ss_dssp EEEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEE
T ss_pred CCCEEEEECCCCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCC-CEEEEEEECCCCCC
T ss_conf 9603499988798649999895----789848991999989998-----8887787899996599-72898861012221
Q ss_pred EECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEECCC-
Q ss_conf 9868999524884157887379998389990999983799299998579905678517810799903999799998599-
Q 002519 702 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN- 780 (913)
Q Consensus 702 wdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ll~~~~dg- 780 (913)
|++... .....+.++.+.+++. ++ ....++.+.+|+..++.....+.......++.+++..+++++.++
T Consensus 72 w~~~~~--------~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 141 (287)
T d1pgua2 72 NGITKH--------EFGSQPKVASANNDGF-TA-VLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 141 (287)
T ss_dssp TTEEEE--------ECSSCEEEEEECSSSE-EE-EEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTS
T ss_pred CCCCCC--------CCCCCEEEEEECCCCC-EE-EEEECCCCEEEECCCEEEEEECCCCCEEEEEECCCCCEEEECCCCC
T ss_conf 111111--------1122101466416785-69-9960332100001100354310122203565214751110002210
Q ss_pred EEEEEECCCCEEEEEEC-CCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECC---
Q ss_conf 19999789970899950-799885899992999999999499-2999988889987137884039995299999079---
Q 002519 781 VVSILDAETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT--- 855 (913)
Q Consensus 781 ~I~i~D~~t~~~~~~l~-~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~--- 855 (913)
.+++|++........+. .+...+++++|+|++.+|++++.| .|++||+.++. .....+..|...+.+++|+|.
T Consensus 142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~ 219 (287)
T d1pgua2 142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE--VKTSRWAFRTSKINAISWKPAEKG 219 (287)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEECCSCCCSSCEEEEEECCCC--
T ss_pred EEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCC--CCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 002100012210001210247853699951676521101111110000002332--110001111111100000136541
Q ss_pred -------CCEEEEEECCCEEEEEECCC-CCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf -------99899998498199997999-9189-9826689768999927999999996798299909
Q 002519 856 -------YPSLLVIGCYQSLELWNMSE-NKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 856 -------g~~li~~s~dg~I~iwd~~~-~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+.++++++.|+.|++|++.. .+.+ .+.+|...|++++|++++ .|++++.||.|++|+
T Consensus 220 ~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 285 (287)
T ss_dssp ----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred CCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEE
T ss_conf 001267887027664999599988899975899927878985899998999-899997999299999
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.1e-25 Score=223.35 Aligned_cols=289 Identities=13% Similarity=0.046 Sum_probs=214.6
Q ss_pred EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEE---EEECCCCCCEEEEEECCCC-CEEEEEECCCEE
Q ss_conf 365685249998799999069999999968990999978998123---6852479876899998999-989999589909
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK---TNLEEHSSLITDVRFSPSM-PRLATSSFDKTV 699 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~---~~l~~h~~~I~~i~fspdg-~~Lasgs~Dg~I 699 (913)
+.+....+|.+.|++|+|+|++++||+|+.||+|+|||+...... ....+|...|++++|++++ .+|++|+.|+.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCE
T ss_conf 75976889989788899958999999997999299997569986368988558999889999958999789981265311
Q ss_pred EEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE----E-----CCCEEEEEECCC
Q ss_conf 9998689995248841578873799983899909999837992999985799056785----1-----781079990399
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----K-----GGTAQMRFQPHL 770 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~----~-----~~~~~i~~sp~~ 770 (913)
++|++............+........+.++ ...+++++.++.+++||++........ . .......+.+..
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCC
T ss_conf 454204432000001111111111111111-1111110122211102023444330230002430012000001000168
Q ss_pred CEEEEEECCCEEEEEECCCCEE---EEEECCCCCCEEEEEECC-CCCEEEEEECC-EEEEEECCCCCCCC------EE--
Q ss_conf 9799998599199997899708---999507998858999929-99999999499-29999888899871------37--
Q 002519 771 GRYLAAAAENVVSILDAETQAC---RLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGE------CV-- 837 (913)
Q Consensus 771 ~~ll~~~~dg~I~i~D~~t~~~---~~~l~~h~~~V~si~~sp-dg~~l~s~s~d-~I~iwdi~s~~~~~------~i-- 837 (913)
..+++++.|+.|++||++.... ..........+.++.+.+ ++..+++++.| .+.+|++....... ..
T Consensus 161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~ 240 (342)
T d1yfqa_ 161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred CCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEE
T ss_conf 70246517984788760567634111210254221014676369998788654899599998059864011123512565
Q ss_pred ----EEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf ----8840399952999990799989999849819999799991899826689768999927999999996798299909
Q 002519 838 ----HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 838 ----~~~~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
.....+...+.+++|+|++.+|++++.||.|++||+.+++.+....+...+..++|+++++++++++.|+.+++|.
T Consensus 241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred EEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCEEEEEECCCCEEEEE
T ss_conf 55314777623543159966984479998799989999999894988705899987999994799999999199278830
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.6e-24 Score=211.96 Aligned_cols=284 Identities=15% Similarity=0.206 Sum_probs=209.7
Q ss_pred EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCE------EEEECCCCCCEEEEEE------CC-CCCEE
Q ss_conf 36568524999879999906999999996899099997899812------3685247987689999------89-99989
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS------KTNLEEHSSLITDVRF------SP-SMPRL 690 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~------~~~l~~h~~~I~~i~f------sp-dg~~L 690 (913)
......++|.+.|+++++++ ++|++++.|++|+|||..+... ......|...+..+.+ .. +..++
T Consensus 5 ~~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (393)
T d1sq9a_ 5 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 82 (393)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred EEEECCCCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEE
T ss_conf 24520876367127999969--9999997999699878987887765404676542047716766675001579987689
Q ss_pred EEEECCCEEEEEECCCCCCEEEE---------ECCCCCCEEEEEECCCC----CEEEEEEECCCCEEEEECCCCEE----
Q ss_conf 99958990999986899952488---------41578873799983899----90999983799299998579905----
Q 002519 691 ATSSFDKTVRVWDADNPGYSLRT---------FMGHSASVMSLDFHPNK----DDLICSCDGDGEIRYWSINNGSC---- 753 (913)
Q Consensus 691 asgs~Dg~I~Iwdl~~~~~~~~~---------~~~h~~~I~si~fspd~----~~ll~sgs~Dg~I~iwdi~~~~~---- 753 (913)
++++.||.|++|++......... ...+...+..++|.++. ..++++++.|+.|++|++.....
T Consensus 83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~ 162 (393)
T d1sq9a_ 83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 162 (393)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCE
T ss_conf 99948991999982289820565124563243115789668999844788654217999838981999874047753410
Q ss_pred -----------EEEE------ECCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEE------CCCCCCEEEEEECC
Q ss_conf -----------6785------178107999039997999985991999978997089995------07998858999929
Q 002519 754 -----------TRVF------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL------QGHTKPIDSVCWDP 810 (913)
Q Consensus 754 -----------~~~~------~~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l------~~h~~~V~si~~sp 810 (913)
.... ...+.++.|++++ .+++++.|+.|++||+.+++++..+ .+|..+|++++|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 241 (393)
T d1sq9a_ 163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241 (393)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred EEEEECCCEECCCCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf 2331032000145100025789867899978999-899993898299986023321100001111124256387700466
Q ss_pred CCCEEEEEECC-E---EEEEECCCCCCCCEEEEE-------------ECCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 99999999499-2---999988889987137884-------------039995299999079998999984981999979
Q 002519 811 SGELLASVSED-S---VRVWTVGSGSEGECVHEL-------------SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 811 dg~~l~s~s~d-~---I~iwdi~s~~~~~~i~~~-------------~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~ 873 (913)
++++|++++.| + |++||+.++ .++..+ .+|...|++++|+|++++|++++.|++|+|||+
T Consensus 242 dg~~l~sgs~D~t~~~i~lwd~~~g---~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~ 318 (393)
T d1sq9a_ 242 QGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 318 (393)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEECCCCCCCEEEECCCCCC---EEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEEC
T ss_conf 5320112428988421001035321---3444311566664310232023586660013898880698779998999999
Q ss_pred CCCCEE-EECCCCC---------------------CEEEEEEECCC----------CEEEEEECCCCEEEEC
Q ss_conf 999189-9826689---------------------76899992799----------9999996798299909
Q 002519 874 SENKTM-TLTAHEG---------------------LIAALAVSTET----------GYVASASHDKFVKLWK 913 (913)
Q Consensus 874 ~~~~~~-~~~~h~~---------------------~V~~l~~spdg----------~~Lasgs~DG~I~IWd 913 (913)
.+++++ ++.+|.. .+.++.|.+.+ ..|++++.|+.|++|+
T Consensus 319 ~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 319 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCEEEECCCCCEECCCCCCCCEEEEEECCCEEEEEE
T ss_conf 999799999886876137734899999999999831246998866766312368899799999199089990
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=8.1e-24 Score=207.86 Aligned_cols=270 Identities=16% Similarity=0.167 Sum_probs=205.2
Q ss_pred CCEEEEECCCCCCCC---CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 560999718992003---79973893887305430011113687667456600268999888988653345685313656
Q 002519 551 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 627 (913)
Q Consensus 551 ~~~~~~s~dg~~~~~---~~~~~iWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~ 627 (913)
...+.|++|+.++++ ++.+++||.++++....
T Consensus 15 V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~--------------------------------------------- 49 (299)
T d1nr0a2 15 ITALSSSADGKTLFSADAEGHINSWDISTGISNRV--------------------------------------------- 49 (299)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC---------------------------------------------
T ss_pred CEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEE---------------------------------------------
T ss_conf 28999979999999990899299999999968899---------------------------------------------
Q ss_pred EEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCC---EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 852499987999990699999999689909999789981---23685247987689999899998999958990999986
Q 002519 628 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 628 ~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~---~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl 704 (913)
...+|...|++++|++++.++ +++.|+.+++|+..... .......+...+.+++|++++.++++++ ++.+++|+.
T Consensus 50 ~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~ 127 (299)
T d1nr0a2 50 FPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSH 127 (299)
T ss_dssp SSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEET
T ss_pred ECCCCCCCEEEEEEECCCEEE-CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC
T ss_conf 837887748998840331121-023102688731677620111000111134432100112211111222-222211111
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE----ECCCEEEEEECCCCEEEEEECCC
Q ss_conf 89995248841578873799983899909999837992999985799056785----17810799903999799998599
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRYLAAAAEN 780 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~----~~~~~~i~~sp~~~~ll~~~~dg 780 (913)
.. ..... ....+.+++|+|++. ++++++.|+.|++||+++.+..... ...+.++.|++++..+++++.++
T Consensus 128 ~~---~~~~~--~~~~~~~~~~s~~~~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 201 (299)
T d1nr0a2 128 GK---LTEVP--ISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 201 (299)
T ss_dssp TE---EEEEE--CSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred CC---CCCCC--CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11---11101--111233221111111-1111111111111111111111111111111111111111111111111111
Q ss_pred EEEEEECCCCEEE---EEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 1999978997089---9950799885899992999999999499-29999888899871378840399952999990799
Q 002519 781 VVSILDAETQACR---LSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 781 ~I~i~D~~t~~~~---~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g 856 (913)
.|++||..+.... ..+.+|...|++++|+|++.+|++++.| .|++||++++.....+.....+...+.++.| +++
T Consensus 202 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~ 280 (299)
T d1nr0a2 202 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNE 280 (299)
T ss_dssp CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EET
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEE-CCC
T ss_conf 1111111111111111111111111111124666451388828997999989999731489834898896899997-798
Q ss_pred CEEEEEECCCEEEEEECC
Q ss_conf 989999849819999799
Q 002519 857 PSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 857 ~~li~~s~dg~I~iwd~~ 874 (913)
.+|++++.|+.|++||+.
T Consensus 281 ~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 281 TTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TEEEEEETTSCEEEEECC
T ss_pred CEEEEEECCCEEEEEECC
T ss_conf 999999289979999444
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=2.3e-22 Score=195.75 Aligned_cols=209 Identities=16% Similarity=0.280 Sum_probs=148.6
Q ss_pred EEEEEEECCCCCEEEEEEECCCCEEEEEEC--CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCE-EEEEECCCEEE
Q ss_conf 365685249998799999069999999968--990999978998123685247987689999899998-99995899099
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFDKTVR 700 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~i~fspdg~~Lasgs~--Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~-Lasgs~Dg~I~ 700 (913)
.....+..|.+.|.+++|++++++|++++. ++.+++|+.++++.+..+.+|...|++++|++++.+ +++++.|+.|+
T Consensus 106 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~ 185 (325)
T d1pgua1 106 NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV 185 (325)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEE
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 02541136567377999899988220100124404788850233110012001234321111234320688862111221
Q ss_pred EEECCCCCCEEEE---ECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 9986899952488---4157887379998389990999983799299998579905678517810799903999799998
Q 002519 701 VWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 777 (913)
Q Consensus 701 Iwdl~~~~~~~~~---~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ll~~~ 777 (913)
+|++.. .+.... ...|...|.+++|+|++..++++++.|+.|++||+++++++..+.++...
T Consensus 186 ~~d~~~-~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~-------------- 250 (325)
T d1pgua1 186 FYQGPP-FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP-------------- 250 (325)
T ss_dssp EEETTT-BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBC--------------
T ss_pred CCCCCC-CCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCC--------------
T ss_conf 111221-10000000015777752776303453100001123321013430012221111111111--------------
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCC--EE--EEEE
Q ss_conf 59919999789970899950799885899992999999999499-2999988889987137884039995--29--9999
Q 002519 778 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FH--SCVF 852 (913)
Q Consensus 778 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~--i~--~i~~ 852 (913)
+...+.+++| +++.+|++++.| .|+|||++++ +++..+..+... +. ++.+
T Consensus 251 ---------------------v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~ 305 (325)
T d1pgua1 251 ---------------------VQGGIFALSW-LDSQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVA 305 (325)
T ss_dssp ---------------------CCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEE
T ss_pred ---------------------CCCCEEEEEC-CCCCEEEEEECCCEEEEEECCCC---CEEEEEEECCCCCCCEEEEEEE
T ss_conf ---------------------1110000003-68999999958993999999999---7889999548740676999998
Q ss_pred ECCCCEEEEEECCCEEEEEEC
Q ss_conf 079998999984981999979
Q 002519 853 HPTYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 853 sp~g~~li~~s~dg~I~iwd~ 873 (913)
.++ .+|++++.|+.|++||+
T Consensus 306 ~~~-~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 306 TGN-GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EET-TEEEEEETTSCEEEEET
T ss_pred CCC-CEEEEEECCCEEEEEEC
T ss_conf 899-99999979999999979
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.4e-21 Score=189.32 Aligned_cols=299 Identities=21% Similarity=0.338 Sum_probs=193.4
Q ss_pred EEECCCCCCCC---CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCC---CCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99718992003---799738938873054300111136876674566002689---998889886533456853136568
Q 002519 555 MFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANS 628 (913)
Q Consensus 555 ~~s~dg~~~~~---~~~~~iWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~---~~~~d~~~~~~~~~~~~~~~~~~~ 628 (913)
+++++|.++++ ++.++|||..++++...+. .+...|.+....++ ....|...+.|+.... .....
T Consensus 22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~------~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~---~~~~~ 92 (342)
T d2ovrb2 22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV------GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG---ECIHT 92 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECC------CCSSCEEEEEEETTEEEEEETTSCEEEEETTTT---EEEEE
T ss_pred EEEECCCEEEEEECCCEEEEEECCCCCEEEEEE------CCCCCEEEEEECCCCCCCCEECCCCCCCCCCCC---CCEEC
T ss_conf 999789999999189909999899997999994------889998999947986321000001111111100---00000
Q ss_pred EECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 52499987999990699999999689909999789981236852479876899998999989999589909999868999
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 708 (913)
Q Consensus 629 l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~ 708 (913)
...+...+....+.. ..++.+..|+.+.+|+..+++....+......... +......+++++.|+.|++|+... .
T Consensus 93 ~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~i~~~d~~~-~ 167 (342)
T d2ovrb2 93 LYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPET-E 167 (342)
T ss_dssp ECCCSSCEEEEEEET--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE--EEECSSCEEEEETTSCEEEEEGGG-T
T ss_pred CCCCCEEEEEEECCC--CCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEE--ECCCCCEEEEECCCCEEEEEECCC-C
T ss_conf 123330476520246--52212344403787403556300111001111000--001333024335898699952523-4
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC-EEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 52488415788737999838999099998379929999857990567851781-07999039997999985991999978
Q 002519 709 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT-AQMRFQPHLGRYLAAAAENVVSILDA 787 (913)
Q Consensus 709 ~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~-~~i~~sp~~~~ll~~~~dg~I~i~D~ 787 (913)
..+..+.+|...+..+.+. +. .+++++.||.|++||++..+++..+..+. ...++.+++..+++++.|+.|++||.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~--~~-~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~ 244 (342)
T d2ovrb2 168 TCLHTLQGHTNRVYSLQFD--GI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 244 (342)
T ss_dssp EEEEEECCCSSCEEEEEEC--SS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEEEEECCCCCCCCCCCCC--CC-EEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCEEEEEEC
T ss_conf 3667872754442100689--99-99999589939995255653656741665320577068999999748988999865
Q ss_pred CCCEEEEEECC---CCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEE-----CCCCCEEEEEEECCCCE
Q ss_conf 99708999507---99885899992999999999499-29999888899871378840-----39995299999079998
Q 002519 788 ETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-----CNGNKFHSCVFHPTYPS 858 (913)
Q Consensus 788 ~t~~~~~~l~~---h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~-----~~~~~i~~i~~sp~g~~ 858 (913)
...+....+.. |...+.++.++ ++++++++.| .|++||++++ +++..+. .|...|++++|+|++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg---~~i~~~~~~~~~~~~~~v~~v~~s~~~~~ 319 (342)
T d2ovrb2 245 KTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG---EFIRNLVTLESGGSGGVVWRIRASNTKLV 319 (342)
T ss_dssp TTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC---CEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred CCCCCCCCCCCCCEEEECEEECCCC--CCEEEEECCCCEEEEEECCCC---CEEEEEECCCCCCCCCCEEEEEECCCCCE
T ss_conf 5442211122100011010000137--984499908998999999999---79899862347898897899998799989
Q ss_pred EEEEECCC----EEEEEECCC
Q ss_conf 99998498----199997999
Q 002519 859 LLVIGCYQ----SLELWNMSE 875 (913)
Q Consensus 859 li~~s~dg----~I~iwd~~~ 875 (913)
+++++.|| .|++||+..
T Consensus 320 la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 320 CAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEEECSSSSSCCEEEEEECCC
T ss_pred EEEEECCCCCEEEEEEEECCC
T ss_conf 999968999704899993899
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=6.3e-24 Score=208.74 Aligned_cols=309 Identities=10% Similarity=-0.027 Sum_probs=225.4
Q ss_pred CCCEEEEEC-CCCCCCCC--CCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 856099971-89920037--997389388730543001111368766745660026899988898865334568531365
Q 002519 550 SKPLMMFGT-DGAGTLTS--PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 626 (913)
Q Consensus 550 ~~~~~~~s~-dg~~~~~~--~~~~iWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~ 626 (913)
++-..-||| ||...+.. +.+.+||...+..
T Consensus 4 ~~~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~----------------------------------------------- 36 (360)
T d1k32a3 4 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYV----------------------------------------------- 36 (360)
T ss_dssp GGGEEEEEECGGGCEEEEETTEEEEECTTSSBE-----------------------------------------------
T ss_pred HHHCCCCCCCCCCEEEEEECCEEEEEECCCCCE-----------------------------------------------
T ss_conf 010051468899999999899699998999948-----------------------------------------------
Q ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCC--CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 68524999879999906999999996899--0999978998123685247987689999899998999958990999986
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 627 ~~l~~H~~~V~~i~fspdg~~Lasgs~Dg--~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl 704 (913)
..+ +|...|.+++|+|||++|++++.+. .|++||..+++ ...+..|...|.+++|+|++++|++++.++.+++|++
T Consensus 37 ~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~ 114 (360)
T d1k32a3 37 LKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL 114 (360)
T ss_dssp EEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEC-CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCC-EEEEECCCCEEEEEEECCCCCCCCEECCCCCCCCCCC
T ss_conf 991-69998888999899999999992899899999899994-8875089712774121145432100011111000001
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE---------ECCCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEE
Q ss_conf 899952488415788737999838999099998---------3799299998579905678517--81079990399979
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSC---------DGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRY 773 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sg---------s~Dg~I~iwdi~~~~~~~~~~~--~~~~i~~sp~~~~l 773 (913)
.+ +.....+..+...+.+++|+|++..++++. ..++.+++|++.+++....... ....+.|++++..+
T Consensus 115 ~~-~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l 193 (360)
T d1k32a3 115 ET-GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNL 193 (360)
T ss_dssp TT-CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEE
T ss_pred CC-CCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCEE
T ss_conf 22-21000000135520230121322566521233121100025654266304557135303543221100125779999
Q ss_pred EEEECCCEEEEEECCCCEE-------EEEECCCCCCEEEEEECCCCCEEEEEECC----EEEEEECCCCCCCCEEEEEEC
Q ss_conf 9998599199997899708-------99950799885899992999999999499----299998888998713788403
Q 002519 774 LAAAAENVVSILDAETQAC-------RLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSC 842 (913)
Q Consensus 774 l~~~~dg~I~i~D~~t~~~-------~~~l~~h~~~V~si~~spdg~~l~s~s~d----~I~iwdi~s~~~~~~i~~~~~ 842 (913)
++++.++.+.+||...... ...+..+...+..++|++++..++++..+ ..++|.+.... .....+..
T Consensus 194 ~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 271 (360)
T d1k32a3 194 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP--GDYRMIIP 271 (360)
T ss_dssp EEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC--BCEEEEEE
T ss_pred EEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCEEECCCCCCEEECCCCC--CCEEEEEE
T ss_conf 9995998557533354402320364117985246960120687776715531136526654001012476--75267541
Q ss_pred CCCCEEEEEEECCC---CEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 99952999990799---989999849819999799991899826689768999927999999996798299909
Q 002519 843 NGNKFHSCVFHPTY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 843 ~~~~i~~i~~sp~g---~~li~~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+...+..+.+...+ .+++.++.++.|++||+.+++...+. +.|.+++|+|||++|++++.||.|++||
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~v~~~~~SpDG~~l~~~~~Dg~i~v~d 342 (360)
T d1k32a3 272 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRKDDGKIYTFP 342 (360)
T ss_dssp CSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEC---CCCCEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 3898569999735997069996489987999979997498864---8868799999898999997899499999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.9e-20 Score=177.24 Aligned_cols=266 Identities=21% Similarity=0.408 Sum_probs=211.2
Q ss_pred CCCEEEEECCCCCCCC---CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 8560999718992003---7997389388730543001111368766745660026899988898865334568531365
Q 002519 550 SKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 626 (913)
Q Consensus 550 ~~~~~~~s~dg~~~~~---~~~~~iWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~ 626 (913)
.+.+.++++||..+++ ++.++|||..++ +.+
T Consensus 15 ~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~----------------------------------------------~~~ 48 (293)
T d1p22a2 15 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL----------------------------------------------ECK 48 (293)
T ss_dssp CCCEEEEECCSSEEEEEESSSCEEEEESSSC----------------------------------------------CEE
T ss_pred CCCEEEEEECCCEEEEEECCCEEEEEECCCC----------------------------------------------CEE
T ss_conf 9988999876999999928993999999999----------------------------------------------199
Q ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 68524999879999906999999996899099997899812368524798768999989999899995899099998689
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 706 (913)
Q Consensus 627 ~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl~~ 706 (913)
.++++|.+.|+|++| ++++|++|+.|+.|++|++..+........+.....+ +......++++..++.+++|+...
T Consensus 49 ~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 124 (293)
T d1p22a2 49 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH--LRFNNGMMVTCSKDRSIAVWDMAS 124 (293)
T ss_dssp EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE--EECCTTEEEEEETTSCEEEEECSS
T ss_pred EEEECCCCCEEEEEC--CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEEECCCCCCEEEEECCC
T ss_conf 999267787763423--6300210011101100000246410011111100001--111110000013566306861344
Q ss_pred CCC--EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEE-EEECCCCEEEEEECCCEEE
Q ss_conf 995--2488415788737999838999099998379929999857990567851781079-9903999799998599199
Q 002519 707 PGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM-RFQPHLGRYLAAAAENVVS 783 (913)
Q Consensus 707 ~~~--~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i-~~sp~~~~ll~~~~dg~I~ 783 (913)
... ....+..|...|.++.+.+. .+++++.|+.|++||+++.+.+..+.+....+ .+.+.+..+++++.|+.|+
T Consensus 125 ~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~ 201 (293)
T d1p22a2 125 PTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 201 (293)
T ss_dssp SSCCEEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCEECCC---CCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCEEE
T ss_conf 5444212100011354311000002---2011069986041007888388997155445322168987588765899899
Q ss_pred EEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCC------CCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 99789970899950799885899992999999999499-2999988889------9871378840399952999990799
Q 002519 784 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG------SEGECVHELSCNGNKFHSCVFHPTY 856 (913)
Q Consensus 784 i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~------~~~~~i~~~~~~~~~i~~i~~sp~g 856 (913)
+||.++...+..+.++...+.. +.+++.+|++++.| .|++||+... ....++..+..|...|.+++|+ +
T Consensus 202 i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~ 277 (293)
T d1p22a2 202 LWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--E 277 (293)
T ss_dssp EEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--S
T ss_pred EEECCCCEEEEEECCCCEEEEE--CCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC--C
T ss_conf 9866556146652143100000--14541079998679979999888886444567754557845889988999971--9
Q ss_pred CEEEEEECCCEEEEEE
Q ss_conf 9899998498199997
Q 002519 857 PSLLVIGCYQSLELWN 872 (913)
Q Consensus 857 ~~li~~s~dg~I~iwd 872 (913)
.+|++++.|++|+|||
T Consensus 278 ~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 278 FQIVSSSHDDTILIWD 293 (293)
T ss_dssp SCEEECCSSSEEEEEC
T ss_pred CEEEEEECCCEEEEEC
T ss_conf 9999992299899959
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.4e-20 Score=180.94 Aligned_cols=214 Identities=18% Similarity=0.228 Sum_probs=159.9
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEE----------CCCCCCEEEEEECCC-----CCEEEEEECCCEEEEEECCCCC
Q ss_conf 9999999968990999978998123685----------247987689999899-----9989999589909999868999
Q 002519 644 DGKLLATGGHDKKAVLWHTDTLKSKTNL----------EEHSSLITDVRFSPS-----MPRLATSSFDKTVRVWDADNPG 708 (913)
Q Consensus 644 dg~~Lasgs~Dg~V~iwd~~t~~~~~~l----------~~h~~~I~~i~fspd-----g~~Lasgs~Dg~I~Iwdl~~~~ 708 (913)
++.++++++.||.|++|++........+ ..+...+..++|.++ +.++++++.||.|++|++....
T Consensus 78 ~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~ 157 (393)
T d1sq9a_ 78 ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 157 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred CCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCC
T ss_conf 87689999489919999822898205651245632431157896689998447886542179998389819998740477
Q ss_pred C-----------------EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE---------CCCE
Q ss_conf 5-----------------2488415788737999838999099998379929999857990567851---------7810
Q 002519 709 Y-----------------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTA 762 (913)
Q Consensus 709 ~-----------------~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~---------~~~~ 762 (913)
. .......+...+.+++|+|++ +|++|+.|+.|++||+.+++.+..+. ..+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~ 235 (393)
T d1sq9a_ 158 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235 (393)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred CCCCEEEEEECCCEECCCCEECCCCCCCCEEEEEECCCC--EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 534102331032000145100025789867899978999--899993898299986023321100001111124256387
Q ss_pred EEEEECCCCEEEEEECCC---EEEEEECCCCEEEEEEC-------------CCCCCEEEEEECCCCCEEEEEECC-EEEE
Q ss_conf 799903999799998599---19999789970899950-------------799885899992999999999499-2999
Q 002519 763 QMRFQPHLGRYLAAAAEN---VVSILDAETQACRLSLQ-------------GHTKPIDSVCWDPSGELLASVSED-SVRV 825 (913)
Q Consensus 763 ~i~~sp~~~~ll~~~~dg---~I~i~D~~t~~~~~~l~-------------~h~~~V~si~~spdg~~l~s~s~d-~I~i 825 (913)
+++|+|++..+++++.|+ .|++||++++.++..+. +|...|++++|+|++++|++++.| +|++
T Consensus 236 ~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~v 315 (393)
T d1sq9a_ 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 315 (393)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred ECCCCCCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEE
T ss_conf 70046653201124289884210010353213444311566664310232023586660013898880698779998999
Q ss_pred EECCCCCCCCEEEEEECCCCCEE----EEEEECCCCEEEEE
Q ss_conf 98888998713788403999529----99990799989999
Q 002519 826 WTVGSGSEGECVHELSCNGNKFH----SCVFHPTYPSLLVI 862 (913)
Q Consensus 826 wdi~s~~~~~~i~~~~~~~~~i~----~i~~sp~g~~li~~ 862 (913)
||+.++ .++..+.+|...|. .++|++++..++++
T Consensus 316 Wd~~~g---~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 316 WDVKTK---ERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp EETTTT---EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred EECCCC---CEEEEECCCCCCCCCCCCEEEECCCCCEEEEC
T ss_conf 999999---79999988687613773489999999999983
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.7e-21 Score=188.58 Aligned_cols=290 Identities=10% Similarity=0.056 Sum_probs=201.1
Q ss_pred CCCEEEEECCCCCCCC---CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 8560999718992003---7997389388730543001111368766745660026899988898865334568531365
Q 002519 550 SKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 626 (913)
Q Consensus 550 ~~~~~~~s~dg~~~~~---~~~~~iWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~ 626 (913)
....+.|+|++..+++ ++.++|||...... ....
T Consensus 13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~-------------------------------------------~~~~ 49 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-------------------------------------------NVDL 49 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-------------------------------------------EEEE
T ss_pred CEEEEEEECCCCEEEEEECCCEEEEEECCCCCC-------------------------------------------CEEE
T ss_conf 788899958999999997999299997569986-------------------------------------------3689
Q ss_pred EEEECCCCCEEEEEEECC-CCEEEEEECCCCEEEEECCCCCEEEEECCCCCC-EEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 685249998799999069-999999968990999978998123685247987-689999899998999958990999986
Q 002519 627 NSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSSFDKTVRVWDA 704 (913)
Q Consensus 627 ~~l~~H~~~V~~i~fspd-g~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~-I~~i~fspdg~~Lasgs~Dg~I~Iwdl 704 (913)
....+|.+.|+|++|+++ +.+|++|+.|+.|++|++...........+... .....+.++...+++++.|+.+++||+
T Consensus 50 ~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~ 129 (342)
T d1yfqa_ 50 LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129 (342)
T ss_dssp EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECH
T ss_pred EEECCCCCCEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 88558999889999958999789981265311454204432000001111111111111111111111012221110202
Q ss_pred CCCCCEEE---EECCC--CCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE------CCCEEEEEE-CCCCE
Q ss_conf 89995248---84157--88737999838999099998379929999857990567851------781079990-39997
Q 002519 705 DNPGYSLR---TFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------GGTAQMRFQ-PHLGR 772 (913)
Q Consensus 705 ~~~~~~~~---~~~~h--~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~------~~~~~i~~s-p~~~~ 772 (913)
+....... ....+ ......+.+.+.+. .+++++.|+.|++|++.......... .......+. .++..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (342)
T d1yfqa_ 130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG 208 (342)
T ss_dssp HHHTTBCEEEEESCSSSSSSCCCEEEEEECSS-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE
T ss_pred CCCCCCEEEECCCCCCCCCCEEEEEEEECCCC-CEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCE
T ss_conf 34443302300024300120000010001687-02465179847887605676341112102542210146763699987
Q ss_pred EEEEECCCEEEEEECCCCEE---------EEE------ECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCE
Q ss_conf 99998599199997899708---------999------50799885899992999999999499-299998888998713
Q 002519 773 YLAAAAENVVSILDAETQAC---------RLS------LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 836 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t~~~---------~~~------l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~ 836 (913)
+++++.|+.+.+|+...... ... ...|...+++++|+|++.+|++++.| .|++||+.++ ++
T Consensus 209 ~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~---~~ 285 (342)
T d1yfqa_ 209 YACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---KK 285 (342)
T ss_dssp EEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EE
T ss_pred EEEECCCCEEEEEEECCCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCC---CE
T ss_conf 886548995999980598640111235125655531477762354315996698447999879998999999989---49
Q ss_pred EEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEE
Q ss_conf 788403999529999907999899998498199997999918998266897689
Q 002519 837 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA 890 (913)
Q Consensus 837 i~~~~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~~~~~h~~~V~~ 890 (913)
+..+.. ......++|+++++.+++++.|+.+++|...... +..|...|..
T Consensus 286 l~~~~~-~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~~---~~~~~~~i~~ 335 (342)
T d1yfqa_ 286 IKNFAK-FNEDSVVKIACSDNILCLATSDDTFKTNAAIDQT---IELNASSIYI 335 (342)
T ss_dssp EEECCC-CSSSEEEEEEECSSEEEEEEECTHHHHCSSSCTT---SCCCCCEEEE
T ss_pred EEEECC-CCCCEEEEEEECCCEEEEEECCCCEEEEEEECCC---CCCCCCEEEE
T ss_conf 887058-9998799999479999999919927883012787---6689986999
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=1.8e-20 Score=180.06 Aligned_cols=288 Identities=11% Similarity=0.065 Sum_probs=197.7
Q ss_pred EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEE-----CCCCCCEEEEEECCCCCEEEEE-ECCC
Q ss_conf 365685249998799999069999999968990999978998123685-----2479876899998999989999-5899
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-----EEHSSLITDVRFSPSMPRLATS-SFDK 697 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l-----~~h~~~I~~i~fspdg~~Lasg-s~Dg 697 (913)
+.+.++..| ..+..++|||||++|++++.|++|++||+.+++..... .+|...+.++.|+||+++|+++ ..++
T Consensus 53 ~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~ 131 (426)
T d1hzua2 53 KIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPP 131 (426)
T ss_dssp SEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESS
T ss_pred CEEEEEECC-CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCC
T ss_conf 599999689-9803899989999999995899889997568860489998678887645885002688987999635897
Q ss_pred EEEEEECCCCCCEEEEECCCCCCE-----------EEEEECCCCCEEEEEEECCCCEEEEECCCCEEEE--EE--ECCCE
Q ss_conf 099998689995248841578873-----------7999838999099998379929999857990567--85--17810
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASV-----------MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VF--KGGTA 762 (913)
Q Consensus 698 ~I~Iwdl~~~~~~~~~~~~h~~~I-----------~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~--~~--~~~~~ 762 (913)
.+++||..+ ..+...+..+...+ ..+.+++++..++++....+.+.+++........ .+ .....
T Consensus 132 ~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 210 (426)
T d1hzua2 132 QFAIMDGET-LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLA 210 (426)
T ss_dssp EEEEEETTT-CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEE
T ss_pred EEEEECCCC-CCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCE
T ss_conf 699985776-4125786226777364364278850389987878788885278976999992466520457756677537
Q ss_pred EEEEECCCCEEEEEEC-CCEEEEEECCCCEEEEEECCC--CCCEEEEEECCCCC--EEEE-EECC-EEEEEECCCCC---
Q ss_conf 7999039997999985-991999978997089995079--98858999929999--9999-9499-29999888899---
Q 002519 763 QMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGH--TKPIDSVCWDPSGE--LLAS-VSED-SVRVWTVGSGS--- 832 (913)
Q Consensus 763 ~i~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h--~~~V~si~~spdg~--~l~s-~s~d-~I~iwdi~s~~--- 832 (913)
.+.+.+++.+++++.. +..+.+++..+++.+..+... ......+.+...+. .++. ...+ .+.+|+.....
T Consensus 211 ~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~ 290 (426)
T d1hzua2 211 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ 290 (426)
T ss_dssp EEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT
T ss_pred EEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCCC
T ss_conf 61377888678864201100000002556278875058744434201100698774577415789659885225665203
Q ss_pred -CCCEEEEEECCCCCEEEEEEECCCCEEEEE-------ECCCEEEEEECCCCCEE-EE---------CCCCCCEEEEEEE
Q ss_conf -871378840399952999990799989999-------84981999979999189-98---------2668976899992
Q 002519 833 -EGECVHELSCNGNKFHSCVFHPTYPSLLVI-------GCYQSLELWNMSENKTM-TL---------TAHEGLIAALAVS 894 (913)
Q Consensus 833 -~~~~i~~~~~~~~~i~~i~~sp~g~~li~~-------s~dg~I~iwd~~~~~~~-~~---------~~h~~~V~~l~~s 894 (913)
..++...+..|...+..++|+|++.++++. ..+++|+|||+.+++.. ++ ..+...|..++|+
T Consensus 291 ~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fS 370 (426)
T d1hzua2 291 YAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYN 370 (426)
T ss_dssp TBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEEC
T ss_pred CCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEEEEC
T ss_conf 30258689866887636787489986188850679880228879999898787670895021102567788518987999
Q ss_pred CCCCEEEEE-----ECCCCEEEEC
Q ss_conf 799999999-----6798299909
Q 002519 895 TETGYVASA-----SHDKFVKLWK 913 (913)
Q Consensus 895 pdg~~Lasg-----s~DG~I~IWd 913 (913)
|||++|+.+ +.||.|+|||
T Consensus 371 pDGk~i~vs~~~~~~~~~~i~v~D 394 (426)
T d1hzua2 371 KRGDEVWFSVWNGKNDSSALVVVD 394 (426)
T ss_dssp SSSSEEEEEECCCTTSCCEEEEEE
T ss_pred CCCCEEEEEEECCCCCCCEEEEEE
T ss_conf 999999999724888898299999
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.91 E-value=2.1e-18 Score=162.87 Aligned_cols=239 Identities=14% Similarity=0.173 Sum_probs=186.3
Q ss_pred CCEEEEEEECCCCEEE-EEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCCCEE
Q ss_conf 9879999906999999-99689909999789981236852479876899998999989999-589909999868999524
Q 002519 634 SKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSL 711 (913)
Q Consensus 634 ~~V~~i~fspdg~~La-sgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasg-s~Dg~I~Iwdl~~~~~~~ 711 (913)
..+..++|+|||++|+ ++..++.|++||+.+++.+..+..+. .+..+.|++++..++++ ..++.+++|+..+ +...
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 109 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS-NTVA 109 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCEEEECCCCC-CEEE
T ss_conf 9836999928989999997899989999999894103200024-6431100011111111111110011001243-0243
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEEEEECC-CEEEEEECC
Q ss_conf 884157887379998389990999983799299998579905678517--81079990399979999859-919999789
Q 002519 712 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-NVVSILDAE 788 (913)
Q Consensus 712 ~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~--~~~~i~~sp~~~~ll~~~~d-g~I~i~D~~ 788 (913)
..+. +...+.++.|+|++..+++++..++.+.+|+..+......+.. ....+.+.+++..++++..+ +.+.+|+..
T Consensus 110 ~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (301)
T d1l0qa2 110 GTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV 188 (301)
T ss_dssp EEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EECC-CCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCC
T ss_conf 2024-444423787605897155420111100110001463035315678842888604654013101211111111111
Q ss_pred CCEEEEEECCCCCCEEEEEECCCCCEEEEEEC---C-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEE-EEE
Q ss_conf 97089995079988589999299999999949---9-299998888998713788403999529999907999899-998
Q 002519 789 TQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL-VIG 863 (913)
Q Consensus 789 t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~---d-~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~li-~~s 863 (913)
..+....+.. ...+..++|++++..++++.. + .|++||+.++ +.+..+.. ...+..++|+|++++++ +++
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~---~~~~~~~~-~~~~~~va~spdg~~l~va~~ 263 (301)
T d1l0qa2 189 TNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITARIPV-GPDPAGIAVTPDGKKVYVALS 263 (301)
T ss_dssp TTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEEEEEEC-CSSEEEEEECTTSSEEEEEET
T ss_pred CEEEEECCCC-CCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCC---EEEEEECC-CCCEEEEEEECCCCEEEEEEC
T ss_conf 0001110133-577503110111101111002100002323656998---19999848-998779999189899999989
Q ss_pred CCCEEEEEECCCCCEEE
Q ss_conf 49819999799991899
Q 002519 864 CYQSLELWNMSENKTMT 880 (913)
Q Consensus 864 ~dg~I~iwd~~~~~~~~ 880 (913)
.++.|++||+.+++++.
T Consensus 264 ~~~~i~v~D~~t~~~~~ 280 (301)
T d1l0qa2 264 FCNTVSVIDTATNTITA 280 (301)
T ss_dssp TTTEEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCCEEEE
T ss_conf 99969999999995999
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.89 E-value=4.1e-20 Score=177.11 Aligned_cols=323 Identities=11% Similarity=0.052 Sum_probs=217.7
Q ss_pred CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCC----CCCCCCCCCCCCCCCC--CEEEEEEECCCCCEEEE
Q ss_conf 79973893887305430011113687667456600268999----8889886533456853--13656852499987999
Q 002519 566 SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTD----PRDAGGRGMDVSQGFS--FKEANSVRASTSKVICC 639 (913)
Q Consensus 566 ~~~~~iWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~----~~d~~~~~~~~~~~~~--~~~~~~l~~H~~~V~~i 639 (913)
++.++|||..++++...+.. + +.-....+++|+.. ..|..+++|++..+-. ..++....+|.+.+.++
T Consensus 41 dg~v~vwD~~t~~~~~~l~~----g--~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~ 114 (426)
T d1hzua2 41 AGQIALVDGDSKKIVKVIDT----G--YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK 114 (426)
T ss_dssp TTEEEEEETTTCSEEEEEEC----C--SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred CCEEEEEECCCCCEEEEEEC----C--CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEE
T ss_conf 99799999999959999968----9--98038999899999999958998899975688604899986788876458850
Q ss_pred EEECCCCEEEEE-ECCCCEEEEECCCCCEEEEECCCCC-----------CEEEEEECCCCCEEEEEEC-CCEEEEEECCC
Q ss_conf 990699999999-6899099997899812368524798-----------7689999899998999958-99099998689
Q 002519 640 HFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSS-----------LITDVRFSPSMPRLATSSF-DKTVRVWDADN 706 (913)
Q Consensus 640 ~fspdg~~Lasg-s~Dg~V~iwd~~t~~~~~~l~~h~~-----------~I~~i~fspdg~~Lasgs~-Dg~I~Iwdl~~ 706 (913)
+|+|||++|+++ ..++.+++||..++.....+..+.. ....+.+++++..++.... .+.+.+++...
T Consensus 115 ~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~ 194 (426)
T d1hzua2 115 FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 194 (426)
T ss_dssp STTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECC
T ss_conf 02688987999635897699985776412578622677736436427885038998787878888527897699999246
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC-----CEEEEEECCC-CEEEEEE--C
Q ss_conf 995248841578873799983899909999837992999985799056785178-----1079990399-9799998--5
Q 002519 707 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-----TAQMRFQPHL-GRYLAAA--A 778 (913)
Q Consensus 707 ~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~-----~~~i~~sp~~-~~ll~~~--~ 778 (913)
..........+...+..+.|.|+++.++++...+..+.+++..+++....+... .....+.... +.+.+.. .
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (426)
T d1hzua2 195 IDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG 274 (426)
T ss_dssp SSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTT
T ss_pred CCCEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCC
T ss_conf 65204577566775376137788867886420110000000255627887505874443420110069877457741578
Q ss_pred CCEEEEEECCC-------CEEEEEECCCCCCEEEEEECCCCCEEEE-------EECC-EEEEEECCCCCCCCEEEE----
Q ss_conf 99199997899-------7089995079988589999299999999-------9499-299998888998713788----
Q 002519 779 ENVVSILDAET-------QACRLSLQGHTKPIDSVCWDPSGELLAS-------VSED-SVRVWTVGSGSEGECVHE---- 839 (913)
Q Consensus 779 dg~I~i~D~~t-------~~~~~~l~~h~~~V~si~~spdg~~l~s-------~s~d-~I~iwdi~s~~~~~~i~~---- 839 (913)
++.+.+|+... .+....+.+|...+..++|+|++++|++ +..+ +|+|||+.+++....+..
T Consensus 275 d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~ 354 (426)
T d1hzua2 275 DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEW 354 (426)
T ss_dssp TCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHH
T ss_pred CCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHH
T ss_conf 96598852256652033025868986688763678748998618885067988022887999989878767089502110
Q ss_pred --EECCCCCEEEEEEECCCCEEEEEE-----CCCEEEEEECCCCCEEE-ECCCCCCEEEEEEECCCCEE
Q ss_conf --403999529999907999899998-----49819999799991899-82668976899992799999
Q 002519 840 --LSCNGNKFHSCVFHPTYPSLLVIG-----CYQSLELWNMSENKTMT-LTAHEGLIAALAVSTETGYV 900 (913)
Q Consensus 840 --~~~~~~~i~~i~~sp~g~~li~~s-----~dg~I~iwd~~~~~~~~-~~~h~~~V~~l~~spdg~~L 900 (913)
+..+...+..++|+|||+++++.+ .++.|+|||..+.++.. +.++. .++|+|++.
T Consensus 355 ~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 355 ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN 417 (426)
T ss_dssp HCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred CCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEECCCC------CCCCCCEEE
T ss_conf 256778851898799999999999972488889829999999873899987898------419995575
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=1.6e-20 Score=180.52 Aligned_cols=286 Identities=11% Similarity=0.030 Sum_probs=193.5
Q ss_pred EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEE--EEE---CCCCCCEEEEEECCCCCEE-EEEECCC
Q ss_conf 365685249998799999069999999968990999978998123--685---2479876899998999989-9995899
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNL---EEHSSLITDVRFSPSMPRL-ATSSFDK 697 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~--~~l---~~h~~~I~~i~fspdg~~L-asgs~Dg 697 (913)
+.+..+..+ ..+..++|||||++|++++.|++|++||+.+++.. ..+ .+|...+.+..|+|||++| ++++.++
T Consensus 53 ~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~ 131 (432)
T d1qksa2 53 EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPP 131 (432)
T ss_dssp CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETT
T ss_pred CEEEEEECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEECCCCCCCCEEEEECCCCC
T ss_conf 399997379-9713799889999999982899978998108981288998448898776984321888888999817898
Q ss_pred EEEEEECCCCCCEEEEECC-----------CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEE--EE--CCCE
Q ss_conf 0999986899952488415-----------7887379998389990999983799299998579905678--51--7810
Q 002519 698 TVRVWDADNPGYSLRTFMG-----------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FK--GGTA 762 (913)
Q Consensus 698 ~I~Iwdl~~~~~~~~~~~~-----------h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~--~~--~~~~ 762 (913)
+|+|||..+ +..+..+.. +......+.+++++..++++...++.|.+|+..+.+.... +. ....
T Consensus 132 ~v~i~d~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~ 210 (432)
T d1qksa2 132 QYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH 210 (432)
T ss_dssp EEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEE
T ss_pred EEEEEECCC-CCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCC
T ss_conf 279990765-5422540247764352201688850589987899989999816882999984378752279983367542
Q ss_pred EEEEECCCCEEEEEEC-CCEEEEEECCCCEEEEEECC-----CCCCEEEEEECCCCCEEEEEEC-C-EEEEEECCCCCC-
Q ss_conf 7999039997999985-99199997899708999507-----9988589999299999999949-9-299998888998-
Q 002519 763 QMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-----HTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSE- 833 (913)
Q Consensus 763 ~i~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~-----h~~~V~si~~spdg~~l~s~s~-d-~I~iwdi~s~~~- 833 (913)
.+.|+|++.++++++. ++.+.++|..+.+.+..+.. +........+...+...++... + .+.+|.......
T Consensus 211 ~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~ 290 (432)
T d1qksa2 211 DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP 290 (432)
T ss_dssp EEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred CCEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCCCCEECCCCCCCCEEEECCCCCCCCC
T ss_conf 65388988799995166636777614452688872148622456766410148988310213568835876245665554
Q ss_pred ---CCEEEEEECCCCCEEEEEE------------------------ECCCCEEEEEECCCEEEEEECCCCCEEEECCCCC
Q ss_conf ---7137884039995299999------------------------0799989999849819999799991899826689
Q 002519 834 ---GECVHELSCNGNKFHSCVF------------------------HPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG 886 (913)
Q Consensus 834 ---~~~i~~~~~~~~~i~~i~~------------------------sp~g~~li~~s~dg~I~iwd~~~~~~~~~~~h~~ 886 (913)
......+..+......+.. .|++..+++++.|+.+++|++.++. .+..|..
T Consensus 291 ~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~--~l~~~~~ 368 (432)
T d1qksa2 291 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA--GITEGQP 368 (432)
T ss_dssp TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH--TCCSSCC
T ss_pred CCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCEEEEEEEEECHHHCCCCCCCCEEECCCCCCC--CCCCCCC
T ss_conf 65657779988689976888726886410211267888770359999962461045567844863343444--4578998
Q ss_pred CEEEEEEECCCCEEEEEE-----CCCCEEEEC
Q ss_conf 768999927999999996-----798299909
Q 002519 887 LIAALAVSTETGYVASAS-----HDKFVKLWK 913 (913)
Q Consensus 887 ~V~~l~~spdg~~Lasgs-----~DG~I~IWd 913 (913)
.|.+++|+|||++|+.+. .+|.|.|||
T Consensus 369 ~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D 400 (432)
T d1qksa2 369 RVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400 (432)
T ss_dssp EEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CEEEEEECCCCCEEEEEEECCCCCCCCEEEEE
T ss_conf 68976798999999999704888888689999
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.87 E-value=4.2e-17 Score=152.11 Aligned_cols=258 Identities=12% Similarity=0.134 Sum_probs=209.5
Q ss_pred EEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCCEEEEECCCCCCEEEEEE
Q ss_conf 99996899099997899812368524798768999989999899-99589909999868999524884157887379998
Q 002519 648 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 726 (913)
Q Consensus 648 Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~La-sgs~Dg~I~Iwdl~~~~~~~~~~~~h~~~I~si~f 726 (913)
+++++.|++|.+||+.+++.+.++... ..+..++|+||+++|+ +++.++.|++||+.+ ...+..+..+. .+..+.|
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t-~~~~~~~~~~~-~~~~~~~ 81 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPAGS-SPQGVAV 81 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEECSS-SEEEEEE
T ss_pred EEEECCCCEEEEEECCCCEEEEEEECC-CCCEEEEEECCCCEEEEEECCCCEEEEEECCC-CCEEEEEECCC-CCCCCCC
T ss_conf 999789998999999999599999889-98369999289899999978999899999998-94103200024-6431100
Q ss_pred CCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEEEEEC-CCEEEEEECCCCEEEEEECCCCCCE
Q ss_conf 389990999983799299998579905678517--8107999039997999985-9919999789970899950799885
Q 002519 727 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPI 803 (913)
Q Consensus 727 spd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~--~~~~i~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h~~~V 803 (913)
++++..+++++..++.+.+|+..+++....+.. ....+.+++++..++++.. +..+.+|+..+...+..+.. ...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (301)
T d1l0qa2 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSP 160 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSE
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCC-CCCC
T ss_conf 011111111111110011001243024320244444237876058971554201111001100014630353156-7884
Q ss_pred EEEEECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECC---CEEEEEECCCCCE
Q ss_conf 899992999999999499--29999888899871378840399952999990799989999849---8199997999918
Q 002519 804 DSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKT 878 (913)
Q Consensus 804 ~si~~spdg~~l~s~s~d--~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~li~~s~d---g~I~iwd~~~~~~ 878 (913)
..+.+++++..++++..+ .+.+|+.... .....+.. ......++|++++..++++..+ +.|++||..+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~ 236 (301)
T d1l0qa2 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred EEEEEECCCCCEEEECCCCCCCCCCCCCCE---EEEECCCC-CCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEE
T ss_conf 288860465401310121111111111100---01110133-57750311011110111100210000232365699819
Q ss_pred EEECCCCCCEEEEEEECCCCEE-EEEECCCCEEEEC
Q ss_conf 9982668976899992799999-9996798299909
Q 002519 879 MTLTAHEGLIAALAVSTETGYV-ASASHDKFVKLWK 913 (913)
Q Consensus 879 ~~~~~h~~~V~~l~~spdg~~L-asgs~DG~I~IWd 913 (913)
.....+...+.+++|+||+++| ++++.|+.|++||
T Consensus 237 ~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D 272 (301)
T d1l0qa2 237 TARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVID 272 (301)
T ss_dssp EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 999848998779999189899999989999699999
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=1.2e-18 Score=165.04 Aligned_cols=229 Identities=11% Similarity=0.157 Sum_probs=179.2
Q ss_pred EECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 52499987999990699999999689909999789981236852479876899998999989999589909999868999
Q 002519 629 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 708 (913)
Q Consensus 629 l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~ 708 (913)
.++|...|.+++|+++. .+++++.|++|++|++...+ ....+.++.+.+++..++++ .++.+.+|+..+ +
T Consensus 42 ~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~ 111 (287)
T d1pgua2 42 HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFT-G 111 (287)
T ss_dssp ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTT-C
T ss_pred CCCCCCCEEEEEECCCC-EEEEEEECCCCCCCCCCCCC-------CCCCEEEEEECCCCCEEEEE-ECCCCEEEECCC-E
T ss_conf 88877878999965997-28988610122211111111-------12210146641678569996-033210000110-0
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE----CCCEEEEEECCCCEEEEEECCCEEEE
Q ss_conf 52488415788737999838999099998379929999857990567851----78107999039997999985991999
Q 002519 709 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSI 784 (913)
Q Consensus 709 ~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~----~~~~~i~~sp~~~~ll~~~~dg~I~i 784 (913)
..+..+.. ...+. ++++++..+++++..++.|++|++........+. ..+.+++|++++.++++++.|+.|++
T Consensus 112 ~~~~~~~~-~~~~~--~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 188 (287)
T d1pgua2 112 DIIKSVRL-NSPGS--AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILL 188 (287)
T ss_dssp CEEEEEEC-SSCEE--EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEECCC-CCEEE--EEECCCCCEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 35431012-22035--6521475111000221000210001221000121024785369995167652110111111000
Q ss_pred EECCCCEEEEE-ECCCCCCEEEEEECCC----------CCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 97899708999-5079988589999299----------9999999499-2999988889987137884039995299999
Q 002519 785 LDAETQACRLS-LQGHTKPIDSVCWDPS----------GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 852 (913)
Q Consensus 785 ~D~~t~~~~~~-l~~h~~~V~si~~spd----------g~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~ 852 (913)
||..++..... +.+|...|.+++|+|. +.+|++++.| .|++|+++.+ ...+..+..|...|.++.|
T Consensus 189 ~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~--~~~~~~~~~h~~~V~~v~~ 266 (287)
T d1pgua2 189 YDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP--MKIIKALNAHKDGVNNLLW 266 (287)
T ss_dssp EETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT--TCCEEETTSSTTCEEEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCC--CEEEEEECCCCCCEEEEEE
T ss_conf 00023321100011111111000001365410012678870276649995999888999--7589992787898589999
Q ss_pred ECCCCEEEEEECCCEEEEEEC
Q ss_conf 079998999984981999979
Q 002519 853 HPTYPSLLVIGCYQSLELWNM 873 (913)
Q Consensus 853 sp~g~~li~~s~dg~I~iwd~ 873 (913)
++++ .|++++.|+.|++|++
T Consensus 267 ~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 267 ETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EETT-EEEEEETTSCEEEEEE
T ss_pred CCCC-EEEEEECCCEEEEEEE
T ss_conf 8999-8999979992999997
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=2.3e-17 Score=154.32 Aligned_cols=307 Identities=12% Similarity=0.050 Sum_probs=187.1
Q ss_pred CEEEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCC----CCCCCCCCCCCCCCCC--CCEEEEEEECCCCCEEEEEEE
Q ss_conf 7389388730543001111368766745660026899----9888988653345685--313656852499987999990
Q 002519 569 NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDT----DPRDAGGRGMDVSQGF--SFKEANSVRASTSKVICCHFS 642 (913)
Q Consensus 569 ~~iWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~----~~~d~~~~~~~~~~~~--~~~~~~~l~~H~~~V~~i~fs 642 (913)
+.|||..++++...+.. |. ......+++|+. ...+..++.|++..+- ...++....+|.+.+.+..|+
T Consensus 44 v~v~D~~t~~v~~~~~~----g~--~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~S 117 (432)
T d1qksa2 44 IALIDGSTYEIKTVLDT----GY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG 117 (432)
T ss_dssp EEEEETTTCCEEEEEEC----SS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTT
T ss_pred EEEEECCCCCEEEEEEC----CC--CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEECCCC
T ss_conf 99998999839999737----99--7137998899999999828999789981089812889984488987769843218
Q ss_pred CCCCEE-EEEECCCCEEEEECCCCCEEEEECC-----------CCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCC
Q ss_conf 699999-9996899099997899812368524-----------798768999989999899-995899099998689995
Q 002519 643 SDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEE-----------HSSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGY 709 (913)
Q Consensus 643 pdg~~L-asgs~Dg~V~iwd~~t~~~~~~l~~-----------h~~~I~~i~fspdg~~La-sgs~Dg~I~Iwdl~~~~~ 709 (913)
|||++| +++..++.|+|||..+++.+..+.. +......+.+++++.+++ +...++.|.+|+..+...
T Consensus 118 pDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~ 197 (432)
T d1qksa2 118 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN 197 (432)
T ss_dssp CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCC
T ss_conf 88888999817898279990765542254024776435220168885058998789998999981688299998437875
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC-------EEEEEECCCCEEEEEEC--CC
Q ss_conf 2488415788737999838999099998379929999857990567851781-------07999039997999985--99
Q 002519 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT-------AQMRFQPHLGRYLAAAA--EN 780 (913)
Q Consensus 710 ~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~-------~~i~~sp~~~~ll~~~~--dg 780 (913)
.......+...+.++.|+|+++.+++++..++.+.+++..+.+....+..+. ......+..+.+..... ++
T Consensus 198 ~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~ 277 (432)
T d1qksa2 198 LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDD 277 (432)
T ss_dssp EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSS
T ss_pred CEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCCCCEECCCCCCCC
T ss_conf 22799833675426538898879999516663677761445268887214862245676641014898831021356883
Q ss_pred EEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCC---------------------CCCEEE
Q ss_conf 19999789970899950799885899992999999999499-29999888899---------------------871378
Q 002519 781 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS---------------------EGECVH 838 (913)
Q Consensus 781 ~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~---------------------~~~~i~ 838 (913)
.|.+|+..... ...+...+....+++++..+++++.+ ..++|+..... ....++
T Consensus 278 ~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k 353 (432)
T d1qksa2 278 SVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFK 353 (432)
T ss_dssp EEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEE
T ss_pred EEEECCCCCCC----CCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCEEEEEEEEECHHHCCCCCCCCEE
T ss_conf 58762456655----54656577799886899768887268864102112678887703599999624610455678448
Q ss_pred --------EEECCCCCEEEEEEECCCCEEEEEEC-----CCEEEEEECCCCCEEEECCCC
Q ss_conf --------84039995299999079998999984-----981999979999189982668
Q 002519 839 --------ELSCNGNKFHSCVFHPTYPSLLVIGC-----YQSLELWNMSENKTMTLTAHE 885 (913)
Q Consensus 839 --------~~~~~~~~i~~i~~sp~g~~li~~s~-----dg~I~iwd~~~~~~~~~~~h~ 885 (913)
.+..+...+..++|+|+|++++++.. ++.|.|||..+.++.......
T Consensus 354 ~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 354 TLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp EECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred ECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEECCC
T ss_conf 633434444578998689767989999999997048888886899999995588684688
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=2.2e-17 Score=154.48 Aligned_cols=238 Identities=12% Similarity=0.106 Sum_probs=143.6
Q ss_pred CCCCEEEEEEECCCCEEE-EEECCCCEEEEECCCCCEEEEECCCCC-----CEEEEEECCCCCEEEEEE-----------
Q ss_conf 999879999906999999-996899099997899812368524798-----768999989999899995-----------
Q 002519 632 STSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPRLATSS----------- 694 (913)
Q Consensus 632 H~~~V~~i~fspdg~~La-sgs~Dg~V~iwd~~t~~~~~~l~~h~~-----~I~~i~fspdg~~Lasgs----------- 694 (913)
+...+.+++|+|||++|+ +++.++.|++||+.+++.+..+..+.. .+..++|+|+++++++++
T Consensus 32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T d1pbyb_ 32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred CCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEECC
T ss_conf 89982379999998999999789994999999999298887247773125402548986877579995047762034203
Q ss_pred -CCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC--EEEEEECCC-
Q ss_conf -8990999986899952488415788737999838999099998379929999857990567851781--079990399-
Q 002519 695 -FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT--AQMRFQPHL- 770 (913)
Q Consensus 695 -~Dg~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~--~~i~~sp~~- 770 (913)
.+..+.+||..+ +.....+. +...+.+++|+++++.++ +++ +.+.+||..+++....+.... ....+.+++
T Consensus 112 ~~~~~~~~~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l~-~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (337)
T d1pbyb_ 112 VQPTRVALYDAET-LSRRKAFE-APRQITMLAWARDGSKLY-GLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVL 186 (337)
T ss_dssp ECCCEEEEEETTT-TEEEEEEE-CCSSCCCEEECTTSSCEE-EES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCC
T ss_pred CCCCCEEECCCCC-CEEEEECC-CCCCCEEEEECCCCCEEE-EEC--CCCCEEEEECCCEEEEEECCCCCCCCEECCCCC
T ss_conf 4555212035667-75988414-568721899868888899-971--775056630372788861477543311357763
Q ss_pred ---------C--------------EEEEEECCCEEEEEECCCCEEEEE-ECCCCCCEEEEEECCCCCEEEEEECCEEEEE
Q ss_conf ---------9--------------799998599199997899708999-5079988589999299999999949929999
Q 002519 771 ---------G--------------RYLAAAAENVVSILDAETQACRLS-LQGHTKPIDSVCWDPSGELLASVSEDSVRVW 826 (913)
Q Consensus 771 ---------~--------------~ll~~~~dg~I~i~D~~t~~~~~~-l~~h~~~V~si~~spdg~~l~s~s~d~I~iw 826 (913)
. .......++.+.+|+..++..... +..+...+..+.+++++.++++.. +.|++|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~ 265 (337)
T d1pbyb_ 187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-NVLESF 265 (337)
T ss_dssp CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-SEEEEE
T ss_pred EEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCEEEEECC-CCEEEE
T ss_conf 1401466531246632444103660454036761799986888588898328875058887426613999735-528999
Q ss_pred ECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 88889987137884039995299999079998999984981999979999189
Q 002519 827 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 879 (913)
Q Consensus 827 di~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~ 879 (913)
|+.++ +.+..+.. ...+.+++|+|+|+++++++.++.|++||..+.+.+
T Consensus 266 d~~~~---~~~~~~~~-~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 266 DLEKN---ASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp ETTTT---EEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred ECCCC---CEEEEECC-CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE
T ss_conf 89889---69999748-998899999789999999949992999999987698
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.85 E-value=2.8e-19 Score=170.16 Aligned_cols=279 Identities=11% Similarity=0.066 Sum_probs=196.3
Q ss_pred CCEEEEECCCCCCCCCC-----CCEEEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 56099971899200379-----9738938873054300111136876674566002689998889886533456853136
Q 002519 551 KPLMMFGTDGAGTLTSP-----SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKE 625 (913)
Q Consensus 551 ~~~~~~s~dg~~~~~~~-----~~~iWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~ 625 (913)
...+.|+|||..++..+ .+.+||.++++.
T Consensus 45 v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~---------------------------------------------- 78 (360)
T d1k32a3 45 IRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA---------------------------------------------- 78 (360)
T ss_dssp EEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE----------------------------------------------
T ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCCCE----------------------------------------------
T ss_conf 8889998999999999928998999998999948----------------------------------------------
Q ss_pred EEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------C
Q ss_conf 568524999879999906999999996899099997899812368524798768999989999899995----------8
Q 002519 626 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------F 695 (913)
Q Consensus 626 ~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs----------~ 695 (913)
..+..|...|.+++|+||+++|++++.++.+++|++.+++....+..|...+.+++|+|++++|+.++ .
T Consensus 79 -~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~ 157 (360)
T d1k32a3 79 -EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYV 157 (360)
T ss_dssp -EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCC
T ss_pred -EEEECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECC
T ss_conf -8750897127741211454321000111110000012221000000135520230121322566521233121100025
Q ss_pred CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE----------CCCEEEE
Q ss_conf 990999986899952488415788737999838999099998379929999857990567851----------7810799
Q 002519 696 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------GGTAQMR 765 (913)
Q Consensus 696 Dg~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~----------~~~~~i~ 765 (913)
++.+++|++.+ +. ...+..+...+.++.|+|+++.++ +++.++.+++|+........... .....+.
T Consensus 158 ~~~~~v~d~~~-~~-~~~~~~~~~~~~~~~~spdg~~l~-~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (360)
T d1k32a3 158 MQAIHVYDMEG-RK-IFAATTENSHDYAPAFDADSKNLY-YLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 234 (360)
T ss_dssp EEEEEEEETTT-TE-EEECSCSSSBEEEEEECTTSCEEE-EEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred CCCEEEECCCC-CC-EEEECCCCCCCCCCCCCCCCCEEE-EEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCE
T ss_conf 65426630455-71-353035432211001257799999-9959985575333544023203641179852469601206
Q ss_pred EECCCCEEEEEECC-----CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCC---EEEEEECC-EEEEEECCCCCCCCE
Q ss_conf 90399979999859-----9199997899708999507998858999929999---99999499-299998888998713
Q 002519 766 FQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE---LLASVSED-SVRVWTVGSGSEGEC 836 (913)
Q Consensus 766 ~sp~~~~ll~~~~d-----g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~---~l~s~s~d-~I~iwdi~s~~~~~~ 836 (913)
+++++..+..+..+ ..+..++...+... .+..+...+..+.+...+. ++++++.+ .+++||+.+++ .
T Consensus 235 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~ 310 (360)
T d1k32a3 235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR-MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---V 310 (360)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE-EEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC---E
T ss_pred ECCCCCCCCCCCEEECCCCCCEEECCCCCCCEE-EEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCE---E
T ss_conf 877767155311365266540010124767526-754138985699997359970699964899879999799974---9
Q ss_pred EEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCC
Q ss_conf 7884039995299999079998999984981999979999189-98266897
Q 002519 837 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL 887 (913)
Q Consensus 837 i~~~~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~-~~~~h~~~ 887 (913)
..+ ...+..++|+||+++|++++.||.|++||+..++.. ++..+..+
T Consensus 311 -~~~---~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~ 358 (360)
T d1k32a3 311 -TEV---KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP 358 (360)
T ss_dssp -EEE---EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSC
T ss_pred -EEE---CCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCC
T ss_conf -886---488687999998989999978994999999999854599841622
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=4.9e-18 Score=159.84 Aligned_cols=267 Identities=9% Similarity=0.023 Sum_probs=145.7
Q ss_pred EEEECCCCEEEEEECCCCEEEEECCCCCEEEEECC-CCCCEEEEEECCCCCEEEE-EECCCEEEEEECCCCCCEEEEECC
Q ss_conf 99906999999996899099997899812368524-7987689999899998999-958990999986899952488415
Q 002519 639 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLAT-SSFDKTVRVWDADNPGYSLRTFMG 716 (913)
Q Consensus 639 i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~-h~~~I~~i~fspdg~~Las-gs~Dg~I~Iwdl~~~~~~~~~~~~ 716 (913)
++|++++++|++++.+++|.+||+.+++.+.++.. +...+.+++|+||++++++ ++.++.|++||+.+ ++.+..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t-~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEES
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCC-CEEEEEECC
T ss_conf 5588999699998699979999999998999999489997045999789899999978999399996756-713123103
Q ss_pred CC------CCEEEEEECCCCCEEEEEE-----------ECCCCEEEEECCCCEEEEEEE-----CCCEEEEEECCCCEEE
Q ss_conf 78------8737999838999099998-----------379929999857990567851-----7810799903999799
Q 002519 717 HS------ASVMSLDFHPNKDDLICSC-----------DGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYL 774 (913)
Q Consensus 717 h~------~~I~si~fspd~~~ll~sg-----------s~Dg~I~iwdi~~~~~~~~~~-----~~~~~i~~sp~~~~ll 774 (913)
.. ..+..+.|+|+++.++++. ..+..+.+|+..+++....+. .....+.+.++ +.++
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 159 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD-GSLY 159 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT-SCEE
T ss_pred CCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCC-CEEE
T ss_conf 654345477417999905888899970577521565146762489985256326568873102474399995278-7899
Q ss_pred EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCE--------------------------EEEEECC-EEEEEE
Q ss_conf 9985991999978997089995079988589999299999--------------------------9999499-299998
Q 002519 775 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL--------------------------LASVSED-SVRVWT 827 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~--------------------------l~s~s~d-~I~iwd 827 (913)
+. +..+.+|+..+++.+..+..+. ....+.++|++.. +++...+ .+.+|+
T Consensus 160 ~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
T d1jmxb_ 160 VA--GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236 (346)
T ss_dssp EE--SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EE--CCCCEEEECCCCCEEEEEECCC-CCCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEE
T ss_conf 84--7962699806997899996489-86623771255289998649981676512311126732575404783499997
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCC
Q ss_conf 88899871378840399952999990799989999849819999799991899826689768999927999999996798
Q 002519 828 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 907 (913)
Q Consensus 828 i~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG 907 (913)
+.++. ........+...+..+.+++++.+++.... +.|++||..+++.+....+...+.+++|+||+++|++++.|+
T Consensus 237 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~ 313 (346)
T d1jmxb_ 237 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN 313 (346)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSS
T ss_pred CCCCC--EEEEEEECCCCEEEEEEEECCCCEEEEECC-CEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 77883--687876315660688897179978999429-838999899993999974999778999968999999994899
Q ss_pred CEEEEC
Q ss_conf 299909
Q 002519 908 FVKLWK 913 (913)
Q Consensus 908 ~I~IWd 913 (913)
.|+|||
T Consensus 314 ~v~v~D 319 (346)
T d1jmxb_ 314 DLAVFN 319 (346)
T ss_dssp EEEEEE
T ss_pred CEEEEE
T ss_conf 299999
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.83 E-value=2.3e-15 Score=137.65 Aligned_cols=260 Identities=11% Similarity=0.041 Sum_probs=175.6
Q ss_pred EEEEEECCCCCEEEEEEECCCCEEEEEE----------CCCCEEEEECCCCCEEEEECCCCCCE-------EEEEECCCC
Q ss_conf 6568524999879999906999999996----------89909999789981236852479876-------899998999
Q 002519 625 EANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSSLI-------TDVRFSPSM 687 (913)
Q Consensus 625 ~~~~l~~H~~~V~~i~fspdg~~Lasgs----------~Dg~V~iwd~~t~~~~~~l~~h~~~I-------~~i~fspdg 687 (913)
.+..+..+.. ..++|+|||++|++++ .++.|.+||..+++.+..+..+.... ..+.|++++
T Consensus 59 ~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 136 (373)
T d2madh_ 59 ILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN 136 (373)
T ss_pred EEEEEECCCC--CCEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECC
T ss_conf 9999957988--60798689998999960577532124531899997778938889726885136851689708998589
Q ss_pred CEEEEEEC--CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC----
Q ss_conf 98999958--990999986899952488415788737999838999099998379929999857990567851781----
Q 002519 688 PRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---- 761 (913)
Q Consensus 688 ~~Lasgs~--Dg~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~---- 761 (913)
+.++.... ++.+.+|+... ..... +.....++.|+++++.++++.+.|+.+.+|+..............
T Consensus 137 ~~~~v~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 211 (373)
T d2madh_ 137 ADLLFFQFAAGPAVGLVVQGG-SSDDQ----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAA 211 (373)
T ss_pred CCEEEEEECCCCCEEEEECCC-CEEEE----EECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCC
T ss_conf 937999986987467762368-72899----8245206999628991999994799399997477426678863003667
Q ss_pred -----EEEEEECCCCEEEEEECCCEEEEEECCCCEEEEE--ECCCC----------CCEEEEEECCCCCEEE--------
Q ss_conf -----0799903999799998599199997899708999--50799----------8858999929999999--------
Q 002519 762 -----AQMRFQPHLGRYLAAAAENVVSILDAETQACRLS--LQGHT----------KPIDSVCWDPSGELLA-------- 816 (913)
Q Consensus 762 -----~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~--l~~h~----------~~V~si~~spdg~~l~-------- 816 (913)
....+. ..+.++....++.+.+|+......... +..+. .....+++++++..++
T Consensus 212 ~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 290 (373)
T d2madh_ 212 QNLLTQPAQAN-KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA 290 (373)
T ss_pred CCCEEEEEEEC-CCCEEEEECCCCEEEEEECCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
T ss_conf 53043458878-99429992589659999768990789776305647578664136741335771499759995488824
Q ss_pred --EEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCE--EEEEECCCEEEEEECCCCCEE-EECCCCCCEEE
Q ss_conf --99499-2999988889987137884039995299999079998--999984981999979999189-98266897689
Q 002519 817 --SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS--LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAA 890 (913)
Q Consensus 817 --s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~--li~~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~ 890 (913)
....+ .+.+||..++ +.+..+. +...+..++|+||++. +++++.++.|++||+.+++.+ .+..+......
T Consensus 291 ~~~~~~~~~v~~~d~~t~---~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~ 366 (373)
T d2madh_ 291 WKLHAAAKEVTSVTGLVG---QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQV 366 (373)
T ss_pred EEEECCCCEEEEEECCCC---CEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCE
T ss_conf 786258986999989999---6989866-899825899998999899999679992999999999899998888989818
Q ss_pred EEEECC
Q ss_conf 999279
Q 002519 891 LAVSTE 896 (913)
Q Consensus 891 l~~spd 896 (913)
+++..+
T Consensus 367 l~~~~~ 372 (373)
T d2madh_ 367 LSVMNE 372 (373)
T ss_pred EEEECC
T ss_conf 998468
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=8.9e-15 Score=132.77 Aligned_cols=255 Identities=11% Similarity=0.134 Sum_probs=173.0
Q ss_pred EEEEEEECCCCCEEEEEEECCCCEEEEEE-CCCCEEEEECCCCCEEEEE---CCCCCCEEEEEECCCCCEEEEEEC-CCE
Q ss_conf 36568524999879999906999999996-8990999978998123685---247987689999899998999958-990
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNL---EEHSSLITDVRFSPSMPRLATSSF-DKT 698 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~i~fspdg~~Lasgs-~Dg~V~iwd~~t~~~~~~l---~~h~~~I~~i~fspdg~~Lasgs~-Dg~ 698 (913)
+.+..+ .|.+.|.+++|+|||++|++++ .|+.|++|++........+ ..+...+..++|+||+++|++++. ++.
T Consensus 28 ~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~ 106 (333)
T d1ri6a_ 28 TLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGN 106 (333)
T ss_dssp EEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTE
T ss_pred EEEEEE-CCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCC
T ss_conf 999997-5799886899958979999997789969999996898707985301369985499995999887420568883
Q ss_pred EEEEECCCCCC-EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE---------CCCEEEEEEC
Q ss_conf 99998689995-2488415788737999838999099998379929999857990567851---------7810799903
Q 002519 699 VRVWDADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTAQMRFQP 768 (913)
Q Consensus 699 I~Iwdl~~~~~-~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~---------~~~~~i~~sp 768 (913)
|++|+...... .......+...+.++.++|++..+++....+..|.+|+........... .....+.|.+
T Consensus 107 v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~ 186 (333)
T d1ri6a_ 107 VSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP 186 (333)
T ss_dssp EEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT
T ss_pred EEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCEEEECEEEEEECCCCCCEEEEEC
T ss_conf 02200111000000100377853149886301013102565542056897326874100100013340388752799960
Q ss_pred CCCEEEEEEC-CCEEEEEECCCC----EEEEEEC------CCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCCC
Q ss_conf 9997999985-991999978997----0899950------799885899992999999999499--29999888899871
Q 002519 769 HLGRYLAAAA-ENVVSILDAETQ----ACRLSLQ------GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGE 835 (913)
Q Consensus 769 ~~~~ll~~~~-dg~I~i~D~~t~----~~~~~l~------~h~~~V~si~~spdg~~l~s~s~d--~I~iwdi~s~~~~~ 835 (913)
++..++.... .+...+++.... .....+. ........+++++++++++..... .+.+|++.......
T Consensus 187 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (333)
T d1ri6a_ 187 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL 266 (333)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred CCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCCEE
T ss_conf 20147862046672178851035552021002234306877655312689951567205504568827878873999789
Q ss_pred EEEEEECCCCCEEEEEEECCCCEEEEEECC-CEEEEEE--CCCCCEE
Q ss_conf 378840399952999990799989999849-8199997--9999189
Q 002519 836 CVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWN--MSENKTM 879 (913)
Q Consensus 836 ~i~~~~~~~~~i~~i~~sp~g~~li~~s~d-g~I~iwd--~~~~~~~ 879 (913)
.+.........+..++|+|+|++|++++.+ +.|.+|+ ..++++.
T Consensus 267 ~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 267 SKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 313 (333)
T ss_dssp EEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred EEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEE
T ss_conf 99999678997628999079899999988999399999979999689
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.79 E-value=5.3e-14 Score=126.36 Aligned_cols=279 Identities=10% Similarity=0.034 Sum_probs=197.2
Q ss_pred ECCCCCEEEEEEECCCCEEEEEE-----CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------
Q ss_conf 24999879999906999999996-----899099997899812368524798768999989999899995----------
Q 002519 630 RASTSKVICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS---------- 694 (913)
Q Consensus 630 ~~H~~~V~~i~fspdg~~Lasgs-----~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs---------- 694 (913)
..+.+++.+++++|||+.+++.. .++.|.+||..+++.+.++..+... .+.|+||+++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCCC
T ss_conf 56789865630189997899973422578765999989999799999579886--0798689998999960577532124
Q ss_pred CCCEEEEEECCCCCCEEEEECCCCCCE-------EEEEECCCCCEEEEEE-ECCCCEEEEECCCCEEEEEEECCCEEEEE
Q ss_conf 899099998689995248841578873-------7999838999099998-37992999985799056785178107999
Q 002519 695 FDKTVRVWDADNPGYSLRTFMGHSASV-------MSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKGGTAQMRF 766 (913)
Q Consensus 695 ~Dg~I~Iwdl~~~~~~~~~~~~h~~~I-------~si~fspd~~~ll~sg-s~Dg~I~iwdi~~~~~~~~~~~~~~~i~~ 766 (913)
.++.|.+||+.+ ++.+..+..+.... ..+.|+++++.+++.. ..++.+.+|+....+....... ...+.+
T Consensus 95 ~~~~v~v~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 172 (373)
T d2madh_ 95 RTDYVEVFDPVT-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS-PTCYHI 172 (373)
T ss_pred CCEEEEEEECCC-CCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEECC-CEEEEE
T ss_conf 531899997778-938889726885136851689708998589937999986987467762368728998245-206999
Q ss_pred ECCCCEE-EEEECCCEEEEEECCCCEEEEEECCC------CCCEEEEEECCCCCEEEEEECCEEEEEECCCCCCCCEEEE
Q ss_conf 0399979-99985991999978997089995079------9885899992999999999499299998888998713788
Q 002519 767 QPHLGRY-LAAAAENVVSILDAETQACRLSLQGH------TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHE 839 (913)
Q Consensus 767 sp~~~~l-l~~~~dg~I~i~D~~t~~~~~~l~~h------~~~V~si~~spdg~~l~s~s~d~I~iwdi~s~~~~~~i~~ 839 (913)
++++..+ ++...|+.+.+|+....+.......+ ......+.+.+++.+++....+.+.+|+...... ..+..
T Consensus 173 s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~ 251 (373)
T d2madh_ 173 HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAP 251 (373)
T ss_pred ECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCEE-EEEEE
T ss_conf 62899199999479939999747742667886300366753043458878994299925896599997689907-89776
Q ss_pred EECC----------CCCEEEEEEECCCCEEE----------EEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCC-
Q ss_conf 4039----------99529999907999899----------99849819999799991899826689768999927999-
Q 002519 840 LSCN----------GNKFHSCVFHPTYPSLL----------VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETG- 898 (913)
Q Consensus 840 ~~~~----------~~~i~~i~~sp~g~~li----------~~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~- 898 (913)
+... ......+.+++++..++ ....++.+.+||..+++.+....+...+.+++|+||++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~ 331 (373)
T d2madh_ 252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGP 331 (373)
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCE
T ss_conf 30564757866413674133577149975999548882478625898699998999969898668998258999989998
Q ss_pred -EEEEEECCCCEEEEC
Q ss_conf -999996798299909
Q 002519 899 -YVASASHDKFVKLWK 913 (913)
Q Consensus 899 -~Lasgs~DG~I~IWd 913 (913)
++++++.|+.|+|||
T Consensus 332 ~l~vt~~~d~~v~v~D 347 (373)
T d2madh_ 332 DLYALSAGTEVLHIYD 347 (373)
T ss_pred EEEEEECCCCEEEEEE
T ss_conf 9999967999299999
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=5.8e-16 Score=142.65 Aligned_cols=260 Identities=11% Similarity=0.085 Sum_probs=197.2
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEECCC--CCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCCEEEEECCCC----
Q ss_conf 99999968990999978998123685247--98768999989999899-995899099998689995248841578----
Q 002519 646 KLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHS---- 718 (913)
Q Consensus 646 ~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h--~~~I~~i~fspdg~~La-sgs~Dg~I~Iwdl~~~~~~~~~~~~h~---- 718 (913)
++|++++.|++|+|||+.+.+.+.++..+ ...+.+++|+||+++++ +++.++.|++||+.+ ++.+..+..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t-~~~~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBTTEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCC-CCEEEEEECCCCCCC
T ss_conf 6999976799899999999949999987788998237999999899999978999499999999-929888724777312
Q ss_pred -CCEEEEEECCCCCEEEEEEE-----------CCCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEEEEECCCEEEE
Q ss_conf -87379998389990999983-----------799299998579905678517--8107999039997999985991999
Q 002519 719 -ASVMSLDFHPNKDDLICSCD-----------GDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSI 784 (913)
Q Consensus 719 -~~I~si~fspd~~~ll~sgs-----------~Dg~I~iwdi~~~~~~~~~~~--~~~~i~~sp~~~~ll~~~~dg~I~i 784 (913)
..+..+.|+|+++.++++.. .+..+.+||..+++....+.. ....+.|++++..+++++ +.+.+
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~ 158 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--RDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--SSEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCCCCCCEEEEECCCCCEEEEEC--CCCCE
T ss_conf 5402548986877579995047762034203455521203566775988414568721899868888899971--77505
Q ss_pred EECCCCEEEEEECCCCCCEEEEEECCCCCE------------------------EEEEECC-EEEEEECCCCCCCCEEEE
Q ss_conf 978997089995079988589999299999------------------------9999499-299998888998713788
Q 002519 785 LDAETQACRLSLQGHTKPIDSVCWDPSGEL------------------------LASVSED-SVRVWTVGSGSEGECVHE 839 (913)
Q Consensus 785 ~D~~t~~~~~~l~~h~~~V~si~~spdg~~------------------------l~s~s~d-~I~iwdi~s~~~~~~i~~ 839 (913)
||..+++....+..+... ....+.+++.. +.....+ .+.+|++..+. .....
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 235 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--EEEEE
T ss_pred EEEECCCEEEEEECCCCC-CCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCC--EEEEE
T ss_conf 663037278886147754-331135776314014665312466324441036604540367617999868885--88898
Q ss_pred EECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 40399952999990799989999849819999799991899826689768999927999999996798299909
Q 002519 840 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 913 (913)
Q Consensus 840 ~~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~DG~I~IWd 913 (913)
+..+...+..+.+++++.++++. ++.|++||+.+++.+....+...+.+++|+|||++|++++.|+.|+|||
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D 307 (337)
T d1pbyb_ 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred ECCCCCCEEEEEECCCCEEEEEC--CCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 32887505888742661399973--5528999898896999974899889999978999999994999299999
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=2.5e-14 Score=129.11 Aligned_cols=267 Identities=12% Similarity=0.182 Sum_probs=187.0
Q ss_pred EEEEEECCCCEEEEECCCCCEEEE--ECCCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCCEEE--EECCCCCCE
Q ss_conf 999996899099997899812368--5247987689999899998999958-99099998689995248--841578873
Q 002519 647 LLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLR--TFMGHSASV 721 (913)
Q Consensus 647 ~Lasgs~Dg~V~iwd~~t~~~~~~--l~~h~~~I~~i~fspdg~~Lasgs~-Dg~I~Iwdl~~~~~~~~--~~~~h~~~I 721 (913)
.++++..|++|++|++.....+.. ...+.+.+.+|+|+||+++|++++. |+.|++|+++....... ....+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 99987899938999983999769999975799886899958979999997789969999996898707985301369985
Q ss_pred EEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE-----CCCEEEEEECCCCEEEEEEC-CCEEEEEECCCCEEEE-
Q ss_conf 7999838999099998379929999857990567851-----78107999039997999985-9919999789970899-
Q 002519 722 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRL- 794 (913)
Q Consensus 722 ~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~-----~~~~~i~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~- 794 (913)
..++|+|+++.+++++..++.|.+|+........... .....+.+++++..++++.. +..|.+|+........
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred EEEEECCCCCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCEE
T ss_conf 49999599988742056888302200111000000100377853149886301013102565542056897326874100
Q ss_pred -----EECCCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCC-CEEEEEE------CCCCCEEEEEEECCCCEEE
Q ss_conf -----950799885899992999999999499--2999988889987-1378840------3999529999907999899
Q 002519 795 -----SLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEG-ECVHELS------CNGNKFHSCVFHPTYPSLL 860 (913)
Q Consensus 795 -----~l~~h~~~V~si~~spdg~~l~s~s~d--~I~iwdi~s~~~~-~~i~~~~------~~~~~i~~i~~sp~g~~li 860 (913)
...........++|++++.+++..... ...+|++...... .....+. ........+.+++++++++
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~ 245 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 245 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred EECEEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEE
T ss_conf 10001334038875279996020147862046672178851035552021002234306877655312689951567205
Q ss_pred EEEC-CCEEEEEECCCCCEE----EECCCCCCEEEEEEECCCCEEEEEE-CCCCEEEEC
Q ss_conf 9984-981999979999189----9826689768999927999999996-798299909
Q 002519 861 VIGC-YQSLELWNMSENKTM----TLTAHEGLIAALAVSTETGYVASAS-HDKFVKLWK 913 (913)
Q Consensus 861 ~~s~-dg~I~iwd~~~~~~~----~~~~h~~~V~~l~~spdg~~Lasgs-~DG~I~IWd 913 (913)
+... ++.+.+|++...... ........+.+++|+|||++|++++ .++.|.+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~ 304 (333)
T d1ri6a_ 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304 (333)
T ss_dssp EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EECCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 50456882787887399978999999678997628999079899999988999399999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.77 E-value=1.3e-15 Score=139.71 Aligned_cols=274 Identities=10% Similarity=0.049 Sum_probs=190.9
Q ss_pred EEECCCCCCCC---CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-
Q ss_conf 99718992003---79973893887305430011113687667456600268999888988653345685313656852-
Q 002519 555 MFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVR- 630 (913)
Q Consensus 555 ~~s~dg~~~~~---~~~~~iWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~l~- 630 (913)
.|+++++++++ ++.+.+||..++++ +.+++
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~----------------------------------------------~~t~~~ 36 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDTV----------------------------------------------YKSCVM 36 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEE----------------------------------------------EEEEEC
T ss_pred CCCCCCCEEEEECCCCEEEEEECCCCCE----------------------------------------------EEEEEC
T ss_conf 5889996999986999799999999989----------------------------------------------999994
Q ss_pred CCCCCEEEEEEECCCCEEEE-EECCCCEEEEECCCCCEEEEECCCC------CCEEEEEECCCCCEEEEEE---------
Q ss_conf 49998799999069999999-9689909999789981236852479------8768999989999899995---------
Q 002519 631 ASTSKVICCHFSSDGKLLAT-GGHDKKAVLWHTDTLKSKTNLEEHS------SLITDVRFSPSMPRLATSS--------- 694 (913)
Q Consensus 631 ~H~~~V~~i~fspdg~~Las-gs~Dg~V~iwd~~t~~~~~~l~~h~------~~I~~i~fspdg~~Lasgs--------- 694 (913)
.|...+.+++|+|||+++++ +..++.|++||+.+++.+..+.... ..+..+.|+||++++++++
T Consensus 37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~ 116 (346)
T d1jmxb_ 37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116 (346)
T ss_dssp SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred CCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEE
T ss_conf 89997045999789899999978999399996756713123103654345477417999905888899970577521565
Q ss_pred ---CCCEEEEEECCCCCCEEEEEC--CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC--EEEEEE
Q ss_conf ---899099998689995248841--5788737999838999099998379929999857990567851781--079990
Q 002519 695 ---FDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT--AQMRFQ 767 (913)
Q Consensus 695 ---~Dg~I~Iwdl~~~~~~~~~~~--~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~--~~i~~s 767 (913)
.++.+.+|+..+ +.....+. .....+..+.+.+++. ++++ ++.+.+|++.+++....+..+. ..+.++
T Consensus 117 ~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (346)
T d1jmxb_ 117 YVVKPPRLEVFSTAD-GLEAKPVRTFPMPRQVYLMRAADDGS-LYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSA 191 (346)
T ss_dssp EEECCCEEEEEEGGG-GGGBCCSEEEECCSSCCCEEECTTSC-EEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCC
T ss_pred ECCCCCEEEEEECCC-CEEEEEEEEEECCCCEEEEEECCCCE-EEEE---CCCCEEEECCCCCEEEEEECCCCCCCEEEE
T ss_conf 146762489985256-32656887310247439999527878-9984---796269980699789999648986623771
Q ss_pred CCCC--------------------------EEEEEECCCEEEEEECCCCEEEE-EECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 3999--------------------------79999859919999789970899-95079988589999299999999949
Q 002519 768 PHLG--------------------------RYLAAAAENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSE 820 (913)
Q Consensus 768 p~~~--------------------------~ll~~~~dg~I~i~D~~t~~~~~-~l~~h~~~V~si~~spdg~~l~s~s~ 820 (913)
+++. .+.....+..+.+|+..++.... .+..+...+..+.+++++.+++....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (346)
T d1jmxb_ 192 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL 271 (346)
T ss_dssp CBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECC
T ss_conf 25528999864998167651231112673257540478349999777883687876315660688897179978999429
Q ss_pred CEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECC
Q ss_conf 92999988889987137884039995299999079998999984981999979999189-9826
Q 002519 821 DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTA 883 (913)
Q Consensus 821 d~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~-~~~~ 883 (913)
+.|++||..++ +.+..+.. ...+.+++|+||++++++++.++.|++||..+.+.+ .+..
T Consensus 272 ~~v~v~d~~~~---~~~~~~~~-~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~ 331 (346)
T d1jmxb_ 272 NRLAKYDLKQR---KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331 (346)
T ss_dssp SEEEEEETTTT---EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCC---CEEEEECC-CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf 83899989999---39999749-99778999968999999994899299999965879799988
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=1.7e-15 Score=138.66 Aligned_cols=254 Identities=10% Similarity=0.062 Sum_probs=162.3
Q ss_pred EEEEEEECCCCEEEEEE----------CCCCEEEEECCCCCEEEEECCCCC-------CEEEEEECCCCCEEEEEEC--C
Q ss_conf 79999906999999996----------899099997899812368524798-------7689999899998999958--9
Q 002519 636 VICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFSPSMPRLATSSF--D 696 (913)
Q Consensus 636 V~~i~fspdg~~Lasgs----------~Dg~V~iwd~~t~~~~~~l~~h~~-------~I~~i~fspdg~~Lasgs~--D 696 (913)
+..++|+|||++|++.+ .|+.|++||..+++.+..+..+.. ....+.|+++++++++++. +
T Consensus 49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~ 128 (355)
T d2bbkh_ 49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA 128 (355)
T ss_dssp SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred CCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCC
T ss_conf 98569948999999996777642015899989999999997988980588640311798734999338871577327988
Q ss_pred CEEEEEECCCCCCEEEEECCCCC-------CEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECC
Q ss_conf 90999986899952488415788-------73799983899909999837992999985799056785178107999039
Q 002519 697 KTVRVWDADNPGYSLRTFMGHSA-------SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPH 769 (913)
Q Consensus 697 g~I~Iwdl~~~~~~~~~~~~h~~-------~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~ 769 (913)
..+.+|+..+ +..+..+..+.. ....+.+++++..+++....++.+.+++........ ........+...
T Consensus 129 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 205 (355)
T d2bbkh_ 129 PAVGVVDLEG-KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED--EFLINHPAYSQK 205 (355)
T ss_dssp CEEEEEETTT-TEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT--SCBCSCCEEETT
T ss_pred CEEEEEECCC-CCEEEEEECCCCCEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEE--CCEEEECCCCCC
T ss_conf 2045430578-8376677058740473069963699938999899983478737999624333000--110610215389
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEE--ECCCC----------CCEEEEEECCCCCEEEEEEC----------C-EEEEE
Q ss_conf 99799998599199997899708999--50799----------88589999299999999949----------9-29999
Q 002519 770 LGRYLAAAAENVVSILDAETQACRLS--LQGHT----------KPIDSVCWDPSGELLASVSE----------D-SVRVW 826 (913)
Q Consensus 770 ~~~ll~~~~dg~I~i~D~~t~~~~~~--l~~h~----------~~V~si~~spdg~~l~s~s~----------d-~I~iw 826 (913)
+..++.+..++.+++|+...+..... ...+. .....+++++++..++.... . .|.+|
T Consensus 206 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~ 285 (355)
T d2bbkh_ 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL 285 (355)
T ss_dssp TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred CCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEE
T ss_conf 97388746998299996589907998445784412685433035108999807997678874068712651799759998
Q ss_pred ECCCCCCCCEEEEEECCCCCEEEEEEECCCCE--EEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECC
Q ss_conf 88889987137884039995299999079998--999984981999979999189-98266897689999279
Q 002519 827 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPS--LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE 896 (913)
Q Consensus 827 di~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~--li~~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd 896 (913)
|..++ +.+..+.. ...+.+++|+|+++. ++++..++.|++||..+++.+ .+..+......+.+..+
T Consensus 286 d~~t~---~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 286 DAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp ETTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred ECCCC---CEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCEEEECCC
T ss_conf 67888---49899668-99877999928999699999789998999999999899999286979658996999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.67 E-value=4.2e-13 Score=118.91 Aligned_cols=274 Identities=8% Similarity=0.051 Sum_probs=187.8
Q ss_pred EEEEEEECCCCEEEEEE-----CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCEEE
Q ss_conf 79999906999999996-----899099997899812368524798768999989999899995----------899099
Q 002519 636 VICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVR 700 (913)
Q Consensus 636 V~~i~fspdg~~Lasgs-----~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs----------~Dg~I~ 700 (913)
+.-.+.+||++++++.. .+..|.+||..+++.+.++..+... .++|+||+++|++++ .|+.|+
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~ 81 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE 81 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEEE
T ss_conf 17476589999999982664777671999999999499999899998--5699489999999967776420158999899
Q ss_pred EEECCCCCCEEEEECCCC-------CCEEEEEECCCCCEEEEEE-ECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCE
Q ss_conf 998689995248841578-------8737999838999099998-37992999985799056785178107999039997
Q 002519 701 VWDADNPGYSLRTFMGHS-------ASVMSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGR 772 (913)
Q Consensus 701 Iwdl~~~~~~~~~~~~h~-------~~I~si~fspd~~~ll~sg-s~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ 772 (913)
+||+.+ +..+..+..+. .....+.|+++++.+++.. +.+..+.+|+..+++....+........+......
T Consensus 82 v~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d2bbkh_ 82 VFDPVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT 160 (355)
T ss_dssp EECTTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred EEECCC-CCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCC
T ss_conf 999999-9798898058864031179873499933887157732798820454305788376677058740473069963
Q ss_pred EEEEECCCEEEEEECCCCEEEEEE------CCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECC--
Q ss_conf 999985991999978997089995------0799885899992999999999499-2999988889987137884039--
Q 002519 773 YLAAAAENVVSILDAETQACRLSL------QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-- 843 (913)
Q Consensus 773 ll~~~~dg~I~i~D~~t~~~~~~l------~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~-- 843 (913)
.++.+.|+...++..........+ ..+...+....+.+++..++.++.+ .+++|++..+.. ..+.....+
T Consensus 161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~ 239 (355)
T d2bbkh_ 161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTE 239 (355)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCH
T ss_pred EEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCE-EEEECCCCCCC
T ss_conf 69993899989998347873799962433300011061021538997388746998299996589907-99844578441
Q ss_pred --------CCCEEEEEEECCCCEEEEEECC----------CEEEEEECCCCCEEEECCCCCCEEEEEEECCCC--EEEEE
Q ss_conf --------9952999990799989999849----------819999799991899826689768999927999--99999
Q 002519 844 --------GNKFHSCVFHPTYPSLLVIGCY----------QSLELWNMSENKTMTLTAHEGLIAALAVSTETG--YVASA 903 (913)
Q Consensus 844 --------~~~i~~i~~sp~g~~li~~s~d----------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~--~Lasg 903 (913)
......+.+++++..+++...+ ..|.+||..+++.+....+...+.+++|+||++ +++++
T Consensus 240 ~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~ 319 (355)
T d2bbkh_ 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALS 319 (355)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEE
T ss_pred CEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEEE
T ss_conf 26854330351089998079976788740687126517997599986788849899668998779999289996999997
Q ss_pred ECCCCEEEEC
Q ss_conf 6798299909
Q 002519 904 SHDKFVKLWK 913 (913)
Q Consensus 904 s~DG~I~IWd 913 (913)
+.|+.|+|||
T Consensus 320 ~~d~~i~v~D 329 (355)
T d2bbkh_ 320 TGDKTLYIHD 329 (355)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCEEEEEE
T ss_conf 8999899999
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.59 E-value=6.1e-13 Score=117.50 Aligned_cols=257 Identities=9% Similarity=-0.012 Sum_probs=159.7
Q ss_pred EEEEEEECCCCCEEEEEEECCCCEEEEEE----------CCCCEEEEECCCCCEEEEECCCCC-------CEEEEEECCC
Q ss_conf 36568524999879999906999999996----------899099997899812368524798-------7689999899
Q 002519 624 KEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFSPS 686 (913)
Q Consensus 624 ~~~~~l~~H~~~V~~i~fspdg~~Lasgs----------~Dg~V~iwd~~t~~~~~~l~~h~~-------~I~~i~fspd 686 (913)
+.+..+..+... .++|+|||++|++.+ .|+.|.+||..+++.+..+..+.. ....++|+||
T Consensus 57 ~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpD 134 (368)
T d1mdah_ 57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS 134 (368)
T ss_dssp EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred CEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCC
T ss_conf 377888578777--513989998899975567640103567869999899993830643785421024688640588789
Q ss_pred CCEEEEEE-CCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE-------
Q ss_conf 99899995-8990999986899952488415788737999838999099998379929999857990567851-------
Q 002519 687 MPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------- 758 (913)
Q Consensus 687 g~~Lasgs-~Dg~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~------- 758 (913)
+++|+++. .++.|.+||+.+ .+....+..+.... +.+.+...++..+.||.+.+|++..........
T Consensus 135 Gk~l~va~~~~~~v~~~d~~~-~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~ 209 (368)
T d1mdah_ 135 SACLLFFLFGSSAAAGLSVPG-ASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA 209 (368)
T ss_dssp SSCEEEEECSSSCEEEEEETT-TEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTT
T ss_pred CCEEEEEECCCCEEEEEECCC-CCEEEEEECCCCCE----ECCCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCC
T ss_conf 989999968998599998998-93867860467523----7469982399994899889998268962666530311135
Q ss_pred --CCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEC--CC----------CCCEEEEEECCCCCEEEEEEC----
Q ss_conf --781079990399979999859919999789970899950--79----------988589999299999999949----
Q 002519 759 --GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GH----------TKPIDSVCWDPSGELLASVSE---- 820 (913)
Q Consensus 759 --~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--~h----------~~~V~si~~spdg~~l~s~s~---- 820 (913)
.......+.+++. +.....+.+++++........... .. ......+++++++..++....
T Consensus 210 ~~~~~~~~~~~~~g~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~ 287 (368)
T d1mdah_ 210 QNCSSQAAQANYPGM--LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR 287 (368)
T ss_dssp SCBCSCCEEETTTTE--EEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSS
T ss_pred CCCCEEECCCCCCCE--EEEECCCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCC
T ss_conf 666466010155868--999348977999606993699760246543045540127883568871799879998358973
Q ss_pred -----C-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCE-E-EEEECCCEEEEEECCCCCEEEECCCCCCEEEEE
Q ss_conf -----9-2999988889987137884039995299999079998-9-999849819999799991899826689768999
Q 002519 821 -----D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS-L-LVIGCYQSLELWNMSENKTMTLTAHEGLIAALA 892 (913)
Q Consensus 821 -----d-~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~-l-i~~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~ 892 (913)
. .|.+||..++ +.+..+.. ...+..+.|+||++. + ++...++.|++||..+++.+....-......|+
T Consensus 288 ~~~~~~~~v~v~D~~t~---~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~ 363 (368)
T d1mdah_ 288 SCLAAAENTSSVTASVG---QTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLS 363 (368)
T ss_dssp CTTSCEEEEEEEESSSC---CEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEE
T ss_pred EEECCCCEEEEEECCCC---CEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEE
T ss_conf 34058864999989999---48689558-996517999989998999994899969999899997999987999987899
Q ss_pred E
Q ss_conf 9
Q 002519 893 V 893 (913)
Q Consensus 893 ~ 893 (913)
+
T Consensus 364 ~ 364 (368)
T d1mdah_ 364 V 364 (368)
T ss_dssp C
T ss_pred E
T ss_conf 7
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.58 E-value=9.3e-12 Score=107.71 Aligned_cols=301 Identities=12% Similarity=0.025 Sum_probs=169.3
Q ss_pred EEEEECCCCCCCC-CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 0999718992003-799738938873054300111136876674566002689998889886533456853136568524
Q 002519 553 LMMFGTDGAGTLT-SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRA 631 (913)
Q Consensus 553 ~~~~s~dg~~~~~-~~~~~iWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~l~~ 631 (913)
.+.|.+|+.+.+. ++.+.+||..+++....++. ..+..
T Consensus 21 ~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~-----------------------------------------~~~~~ 59 (470)
T d2bgra1 21 SLRWISDHEYLYKQENNILVFNAEYGNSSVFLEN-----------------------------------------STFDE 59 (470)
T ss_dssp CCEECSSSEEEEESSSCEEEEETTTCCEEEEECT-----------------------------------------TTTTT
T ss_pred CCEECCCCEEEEECCCCEEEEECCCCCEEEEECH-----------------------------------------HHHHH
T ss_conf 7896899979997599499998899978999701-----------------------------------------56443
Q ss_pred CCCCEEEEEEECCCCEEEEEEC---------CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 9998799999069999999968---------9909999789981236852479876899998999989999589909999
Q 002519 632 STSKVICCHFSSDGKLLATGGH---------DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 702 (913)
Q Consensus 632 H~~~V~~i~fspdg~~Lasgs~---------Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iw 702 (913)
|...|.++.|||||++|+.++. ++.+.|||+.+++ ...+..+...+..+.|+|||++||... ++.+++|
T Consensus 60 ~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~ 137 (470)
T d2bgra1 60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVK 137 (470)
T ss_dssp SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEE
T ss_pred CCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEEE-CCCCEEE
T ss_conf 16765405998988979999777100010467349999898885-131246874231010146764135751-4641379
Q ss_pred ECCCCCCEEEEECC------------------CCCCEEEEEECCCCCEEEEEEECCCCEEEEECC---------------
Q ss_conf 86899952488415------------------788737999838999099998379929999857---------------
Q 002519 703 DADNPGYSLRTFMG------------------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN--------------- 749 (913)
Q Consensus 703 dl~~~~~~~~~~~~------------------h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~--------------- 749 (913)
+..++ ...+.... .......+.|+||++.+++....+..+..|.+.
T Consensus 138 ~~~~g-~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (470)
T d2bgra1 138 IEPNL-PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (470)
T ss_dssp SSTTS-CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred ECCCC-CEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEE
T ss_conf 88999-46532101477740535432011210047765307999987220268637767069987660477788713540
Q ss_pred --------------------CCEEEEEEE--------------CCCEEEEEECCCCEEEEEEC-CC-----EEEEEECCC
Q ss_conf --------------------990567851--------------78107999039997999985-99-----199997899
Q 002519 750 --------------------NGSCTRVFK--------------GGTAQMRFQPHLGRYLAAAA-EN-----VVSILDAET 789 (913)
Q Consensus 750 --------------------~~~~~~~~~--------------~~~~~i~~sp~~~~ll~~~~-dg-----~I~i~D~~t 789 (913)
.+....... ..+..+.|.+++..++.... .. .+..+|..+
T Consensus 217 ~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~t 296 (470)
T d2bgra1 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (470)
T ss_dssp ECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred CCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 36654546886257999988861455203322478633478986677888768783347873046881599999961888
Q ss_pred CEEEEEECC------CCCC-----EEEEEECCCCC--EEEEEECC---EEEEEECCCCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 708999507------9988-----58999929999--99999499---29999888899871378840399952999990
Q 002519 790 QACRLSLQG------HTKP-----IDSVCWDPSGE--LLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 853 (913)
Q Consensus 790 ~~~~~~l~~------h~~~-----V~si~~spdg~--~l~s~s~d---~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~s 853 (913)
+........ .... .....|.+++. +++....+ .|++|+...+ ....+......+..+ ++
T Consensus 297 g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~----~~~~lt~g~~~v~~~-~~ 371 (470)
T d2bgra1 297 GRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK----DCTFITKGTWEVIGI-EA 371 (470)
T ss_dssp TEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS----CCEESCCSSSCEEEE-EE
T ss_pred CCEEEEEEEEEEEEECCCEEECCCCCCCEEEECCCCCEEEEECCCCCCEEEEEECCCC----CEEEECCCCEEEEEE-EE
T ss_conf 9478999875146621433531357772454237884798743675764599952687----304511698048787-89
Q ss_pred CCCCEEEEEE-CCC------EEEEEECCCCCEE-E----ECCCCCCEEEEEEECCCCEEEE
Q ss_conf 7999899998-498------1999979999189-9----8266897689999279999999
Q 002519 854 PTYPSLLVIG-CYQ------SLELWNMSENKTM-T----LTAHEGLIAALAVSTETGYVAS 902 (913)
Q Consensus 854 p~g~~li~~s-~dg------~I~iwd~~~~~~~-~----~~~h~~~V~~l~~spdg~~Las 902 (913)
.+++.++..+ .++ .|+-.++..+... . +..|...+..++||||+++++.
T Consensus 372 ~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~ 432 (470)
T d2bgra1 372 LTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQL 432 (470)
T ss_dssp ECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEE
T ss_pred ECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEE
T ss_conf 7799999999568998351799999888998605703543588898799999989999999
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.47 E-value=4.9e-11 Score=101.71 Aligned_cols=275 Identities=8% Similarity=-0.029 Sum_probs=148.9
Q ss_pred CCEEEEEEECCCCEEEE---EECCC--CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCE
Q ss_conf 98799999069999999---96899--099997899812368524798768999989999899995----------8990
Q 002519 634 SKVICCHFSSDGKLLAT---GGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKT 698 (913)
Q Consensus 634 ~~V~~i~fspdg~~Las---gs~Dg--~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs----------~Dg~ 698 (913)
+....++..++++.... ...++ .|.+||..+++.+..+..+... .+.|+||++.|++.+ .|+.
T Consensus 20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~ 97 (368)
T d1mdah_ 20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDY 97 (368)
T ss_dssp CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCE
T ss_conf 9866645589876126972045788621799708998377888578777--51398999889997556764010356786
Q ss_pred EEEEECCCCCCEEEEECCCC-------CCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCC
Q ss_conf 99998689995248841578-------87379998389990999983799299998579905678517810799903999
Q 002519 699 VRVWDADNPGYSLRTFMGHS-------ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG 771 (913)
Q Consensus 699 I~Iwdl~~~~~~~~~~~~h~-------~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~ 771 (913)
|++||..+ .+.+..+..+. .....+.|+||+++++++...++.|.+||+.+.+....+..+.....+.....
T Consensus 98 v~v~D~~t-~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 176 (368)
T d1mdah_ 98 VEVFDPVT-FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAA 176 (368)
T ss_dssp EEEECTTT-CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETT
T ss_pred EEEEECCC-CCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCCCCC
T ss_conf 99998999-93830643785421024688640588789989999968998599998998938678604675237469982
Q ss_pred EEEEEECCCEEEEEECCCCEEEEEE------CCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCCCCCEEEEEECC--
Q ss_conf 7999985991999978997089995------07998858999929999999994992999988889987137884039--
Q 002519 772 RYLAAAAENVVSILDAETQACRLSL------QGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCN-- 843 (913)
Q Consensus 772 ~ll~~~~dg~I~i~D~~t~~~~~~l------~~h~~~V~si~~spdg~~l~s~s~d~I~iwdi~s~~~~~~i~~~~~~-- 843 (913)
.+++.+.|+.+.+++.......... ..+...+..+.+.+++..+.+... .++++++..... ..+......
T Consensus 177 ~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~v~~~~~~~~~~-~~~~~~~~~~~ 254 (368)
T d1mdah_ 177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVAS-SILQGDIPAAGA-TMKAAIDGNES 254 (368)
T ss_dssp EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSS-CCEEEECCSSCC-EEECCCCSSCT
T ss_pred EEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEEEEECCC-CEEEEEECCCCE-EEEEECCCCCC
T ss_conf 3999948998899982689626665303111356664660101558689993489-779996069936-99760246543
Q ss_pred --------CCCEEEEEEECCCCEEEEEECC---------CEEEEEECCCCCEEEECCCCCCEEEEEEECCCC-E-EEEEE
Q ss_conf --------9952999990799989999849---------819999799991899826689768999927999-9-99996
Q 002519 844 --------GNKFHSCVFHPTYPSLLVIGCY---------QSLELWNMSENKTMTLTAHEGLIAALAVSTETG-Y-VASAS 904 (913)
Q Consensus 844 --------~~~i~~i~~sp~g~~li~~s~d---------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~-Lasgs 904 (913)
......+++++++..+++...+ ..|.+||..+++.+....+...+.+++|+||++ + ++++.
T Consensus 255 ~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~ 334 (368)
T d1mdah_ 255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA 334 (368)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEET
T ss_pred EEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEEEC
T ss_conf 04554012788356887179987999835897334058864999989999486895589965179999899989999948
Q ss_pred CCCCEEEEC
Q ss_conf 798299909
Q 002519 905 HDKFVKLWK 913 (913)
Q Consensus 905 ~DG~I~IWd 913 (913)
.|+.|+|||
T Consensus 335 ~~~~v~v~D 343 (368)
T d1mdah_ 335 GTEVLDIYD 343 (368)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEEE
T ss_conf 999699998
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.47 E-value=1.7e-11 Score=105.54 Aligned_cols=320 Identities=8% Similarity=-0.017 Sum_probs=198.1
Q ss_pred CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCC
Q ss_conf 79973893887305430011113687667456600268999888988653345685313656852499987999990699
Q 002519 566 SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG 645 (913)
Q Consensus 566 ~~~~~iWd~~~g~~~~~~~~~~~~g~~d~~v~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg 645 (913)
++.+++|++.+++....+.-+..++.. . | ...+...+++.. .........|...+.+..+++||
T Consensus 20 sG~V~V~dlpS~r~l~~IpVfspd~~~-g----~------g~~~es~~vl~~-----~~~~~~gd~hhP~~s~t~gtpDG 83 (441)
T d1qnia2 20 QGEVRVLGVPSMRELMRIPVFNVDSAT-G----W------GITNESKEILGG-----DQQYLNGDCHHPHISMTDGRYDG 83 (441)
T ss_dssp TCCEEEEEETTTEEEEEECSSSBCTTT-C----T------TTSHHHHHHHCS-----SSCCSCCCBCCCEEEEETTEEEE
T ss_pred CCCEEEEECCCCCEEEEEEEECCCCCE-E----E------EECCCCCEEEEC-----CCCCCCCCCCCCCCCEECCCCCC
T ss_conf 774899967898079999767578987-9----9------988865047831-----33225675567772210326888
Q ss_pred CEEEEEE-CCCCEEEEECCCCCEEEEECC-CCCCEEEEEECCCCC--EEEEEECCC-----------------EEEEEEC
Q ss_conf 9999996-899099997899812368524-798768999989999--899995899-----------------0999986
Q 002519 646 KLLATGG-HDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMP--RLATSSFDK-----------------TVRVWDA 704 (913)
Q Consensus 646 ~~Lasgs-~Dg~V~iwd~~t~~~~~~l~~-h~~~I~~i~fspdg~--~Lasgs~Dg-----------------~I~Iwdl 704 (913)
++|++.. .+..|.++|+++++....+.. +...+..++|+|+++ +++..+.+. .+..+|.
T Consensus 84 r~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~ 163 (441)
T d1qnia2 84 KYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA 163 (441)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 88999738999799998877847557956788786434870569989999566775443676630014555323886637
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE--CCCEEEEEECCCCEEEEEECCCEE
Q ss_conf 899952488415788737999838999099998379929999857990567851--781079990399979999859919
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVV 782 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~--~~~~~i~~sp~~~~ll~~~~dg~I 782 (913)
.+ ......+.. ......+.|+|+++.+++++.....+..++..+......+. .....+.+.++++++ ..+.++.+
T Consensus 164 ~t-~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~-~v~~~~v~ 240 (441)
T d1qnia2 164 ET-MDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK-TIGDSKVP 240 (441)
T ss_dssp TT-CSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCB-CCTTCCCC
T ss_pred CC-CEEEEEEEC-CCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCEE-EECCCCCE
T ss_conf 55-606478736-9986546987999989998517873189851571217899968851107996699999-96999828
Q ss_pred EEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE-CC-EEEEEECCCCC--------CCCEEEEEECCCCCEEEEEE
Q ss_conf 9997899708999507998858999929999999994-99-29999888899--------87137884039995299999
Q 002519 783 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGS--------EGECVHELSCNGNKFHSCVF 852 (913)
Q Consensus 783 ~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s-~d-~I~iwdi~s~~--------~~~~i~~~~~~~~~i~~i~~ 852 (913)
.+++....+.+..+..... ...+.++|||+++++++ .+ +|.|||+.+.. ...++.......-......|
T Consensus 241 vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~f 319 (441)
T d1qnia2 241 VVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTF 319 (441)
T ss_dssp EEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEE
T ss_pred EEECCCCCCEEEEEECCCC-CCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEE
T ss_conf 9980368706899717988-667268999878999077599389998322445752568842479960145547665226
Q ss_pred ECCCCEEEEEECCCEEEEEECCC----------CCEE-EE-----CCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 07999899998498199997999----------9189-98-----266897689999279999999967
Q 002519 853 HPTYPSLLVIGCYQSLELWNMSE----------NKTM-TL-----TAHEGLIAALAVSTETGYVASASH 905 (913)
Q Consensus 853 sp~g~~li~~s~dg~I~iwd~~~----------~~~~-~~-----~~h~~~V~~l~~spdg~~Lasgs~ 905 (913)
.+++..+.+...|..|..|++.. ..++ .+ .+|...+.+.+++|||++|++++.
T Consensus 320 d~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 320 DGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp CSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred CCCCEEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 578559985244316897235422133226777656864532668987752454223898848996574
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.33 E-value=1.7e-09 Score=88.94 Aligned_cols=253 Identities=11% Similarity=0.081 Sum_probs=141.2
Q ss_pred EEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECC------------------CCCCEEEEEECCCC
Q ss_conf 568524999879999906999999996899099997899812368524------------------79876899998999
Q 002519 626 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE------------------HSSLITDVRFSPSM 687 (913)
Q Consensus 626 ~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~------------------h~~~I~~i~fspdg 687 (913)
...+..+.+.+..+.|||||+.||... ++.+++|+..++........ ..+....+.|+||+
T Consensus 104 ~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDG 182 (470)
T d2bgra1 104 LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 182 (470)
T ss_dssp ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEE-CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEECCCC
T ss_conf 131246874231010146764135751-4641379889994653210147774053543201121004776530799998
Q ss_pred CEEEEEECCCE-EEEEECC---CCC---CE-----------------EEEE----------------------CCCCCCE
Q ss_conf 98999958990-9999868---999---52-----------------4884----------------------1578873
Q 002519 688 PRLATSSFDKT-VRVWDAD---NPG---YS-----------------LRTF----------------------MGHSASV 721 (913)
Q Consensus 688 ~~Lasgs~Dg~-I~Iwdl~---~~~---~~-----------------~~~~----------------------~~h~~~I 721 (913)
++|++...|.+ |..|.+. ... .. +..+ ......+
T Consensus 183 k~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (470)
T d2bgra1 183 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYL 262 (470)
T ss_dssp SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEE
T ss_pred CCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEE
T ss_conf 72202686377670699876604777887135403665454688625799998886145520332247863347898667
Q ss_pred EEEEECCCCCEEEEEEECCC-----CEEEEECCCCEEEEEEEC--------------CCEEEEEECCCCEE--EEEECCC
Q ss_conf 79998389990999983799-----299998579905678517--------------81079990399979--9998599
Q 002519 722 MSLDFHPNKDDLICSCDGDG-----EIRYWSINNGSCTRVFKG--------------GTAQMRFQPHLGRY--LAAAAEN 780 (913)
Q Consensus 722 ~si~fspd~~~ll~sgs~Dg-----~I~iwdi~~~~~~~~~~~--------------~~~~i~~sp~~~~l--l~~~~dg 780 (913)
..+.|.+++..++......+ .+..+|..++........ ......+.++++.+ +....++
T Consensus 263 ~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg 342 (470)
T d2bgra1 263 CDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG 342 (470)
T ss_dssp EEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS
T ss_pred EEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEECCCCCCCEEEECCCCCEEEEECCCC
T ss_conf 78887687833478730468815999999618889478999875146621433531357772454237884798743675
Q ss_pred E--EEEEECCCCEEEEEECCCCCCEEEEEECCCCCEE-EEEECC--E-----EEEEECCCCCCCCEE-EEEECCCCCEEE
Q ss_conf 1--9999789970899950799885899992999999-999499--2-----999988889987137-884039995299
Q 002519 781 V--VSILDAETQACRLSLQGHTKPIDSVCWDPSGELL-ASVSED--S-----VRVWTVGSGSEGECV-HELSCNGNKFHS 849 (913)
Q Consensus 781 ~--I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l-~s~s~d--~-----I~iwdi~s~~~~~~i-~~~~~~~~~i~~ 849 (913)
. |++|+........ +..+...|..+ ++++++.+ +++..+ . |...++..+....++ ..+..+...+..
T Consensus 343 ~~~ly~~~~~g~~~~~-lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s 420 (470)
T d2bgra1 343 YRHICYFQIDKKDCTF-ITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYS 420 (470)
T ss_dssp CEEEEEEETTCSCCEE-SCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEE
T ss_pred CCEEEEEECCCCCEEE-ECCCCEEEEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCEEE
T ss_conf 7645999526873045-11698048787-897799999999568998351799999888998605703543588898799
Q ss_pred EEEECCCCEEEEEECC---CEEEEEECCCCCEEEE
Q ss_conf 9990799989999849---8199997999918998
Q 002519 850 CVFHPTYPSLLVIGCY---QSLELWNMSENKTMTL 881 (913)
Q Consensus 850 i~~sp~g~~li~~s~d---g~I~iwd~~~~~~~~~ 881 (913)
++|+|++++++..... -.+.+|+..+++.+..
T Consensus 421 ~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~ 455 (470)
T d2bgra1 421 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRV 455 (470)
T ss_dssp EEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEE
T ss_pred EEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEE
T ss_conf 99998999999983289998199999899989999
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=1.1e-07 Score=73.77 Aligned_cols=232 Identities=13% Similarity=0.156 Sum_probs=127.7
Q ss_pred CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCE
Q ss_conf 099997899812368524798768999989999899995899---09999868999524884157887379998389990
Q 002519 656 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 732 (913)
Q Consensus 656 ~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg---~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ 732 (913)
.|+|.|.+. .....+..+...+...+|+|||+.||....+. .+.+.+... .....+..+...+....|+|++..
T Consensus 20 ~l~i~d~dG-~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--GAVRQVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--CCEEEEECCSSCEEEEEECTTSSE
T ss_pred EEEEECCCC-CCCEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCC--CCEEEEEEEECCCCCCEECCCCCE
T ss_conf 999992899-97679865898426038878999899998152675134431136--750677642024543024488986
Q ss_pred EEEEEECCCCEEEEECC--CCEEEEEEEC--CCEEEEEECCCCEEEEEEC-CC--EEEEEECCCCEEEEEECCCCCCEEE
Q ss_conf 99998379929999857--9905678517--8107999039997999985-99--1999978997089995079988589
Q 002519 733 LICSCDGDGEIRYWSIN--NGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHTKPIDS 805 (913)
Q Consensus 733 ll~sgs~Dg~I~iwdi~--~~~~~~~~~~--~~~~i~~sp~~~~ll~~~~-dg--~I~i~D~~t~~~~~~l~~h~~~V~s 805 (913)
+++....++...++... .......... ......+......++.... ++ .|.+++........ +.........
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~~ 175 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQD 175 (269)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEE
T ss_pred EEEEEECCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCEE-EECCCCCCCC
T ss_conf 467640278641000022212200001014421145434554433000012687438654213310001-0001222234
Q ss_pred EEECCCCCEEEEEECC----EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECC---CEEEEEECCCCCE
Q ss_conf 9992999999999499----29999888899871378840399952999990799989999849---8199997999918
Q 002519 806 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKT 878 (913)
Q Consensus 806 i~~spdg~~l~s~s~d----~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~li~~s~d---g~I~iwd~~~~~~ 878 (913)
..|+|+++.++..+.+ .+.+++...+ . . .............|+|||+.|+..+.. ..|+++++..+..
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~---~-~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATG---G-V-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTC---C-E-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEEECCCC---C-C-EEEECCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCE
T ss_conf 322345430577860588012567603564---4-0-5850686544558989999999998179984799999999977
Q ss_pred EEECCCCCCEEEEEEECC
Q ss_conf 998266897689999279
Q 002519 879 MTLTAHEGLIAALAVSTE 896 (913)
Q Consensus 879 ~~~~~h~~~V~~l~~spd 896 (913)
..+....+.+...+|+|-
T Consensus 251 ~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 251 ARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp EECCCSSSEEEEEEECCC
T ss_pred EEEECCCCCEEEEEECCC
T ss_conf 998579985883782898
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.25 E-value=2e-09 Score=88.36 Aligned_cols=243 Identities=8% Similarity=-0.015 Sum_probs=149.1
Q ss_pred CCCCEEEEEEECCCC--EEEEEECCC-----------------CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 999879999906999--999996899-----------------0999978998123685247987689999899998999
Q 002519 632 STSKVICCHFSSDGK--LLATGGHDK-----------------KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 692 (913)
Q Consensus 632 H~~~V~~i~fspdg~--~Lasgs~Dg-----------------~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Las 692 (913)
+...+..++|+++|+ +++..+.+. .+..+|..+.+....+... .....+.|+|+++++++
T Consensus 114 ~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~v 192 (441)
T d1qnia2 114 NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATS 192 (441)
T ss_dssp TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEE
T ss_pred CCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECC-CCCCCEEECCCCCEEEE
T ss_conf 88786434870569989999566775443676630014555323886637556064787369-98654698799998999
Q ss_pred EECCC-EEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC--CEEEEEECC
Q ss_conf 95899-099998689995248841578873799983899909999837992999985799056785178--107999039
Q 002519 693 SSFDK-TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--TAQMRFQPH 769 (913)
Q Consensus 693 gs~Dg-~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~--~~~i~~sp~ 769 (913)
++.+. .+..++..+ ......+... ..-..+.+.++++.+. .+.++.+.+++....+.+..+..+ ...+.++|+
T Consensus 193 t~~nse~~~~id~~t-~~~~d~i~v~-n~p~~~~~~~dGk~~~--v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPD 268 (441)
T d1qnia2 193 TCYNSERAVDLAGTM-RNDRDWVVVF-NVERIAAAVKAGNFKT--IGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPD 268 (441)
T ss_dssp EESCTTCCSSHHHHT-CSSBCEEEEE-EHHHHHHHHHTTCCBC--CTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTT
T ss_pred EECCCCCEEEEECCC-CCEEEEEEEC-CCCCEEEEECCCCEEE--ECCCCCEEEECCCCCCEEEEEECCCCCCCCEECCC
T ss_conf 851787318985157-1217899968-8511079966999999--69998289980368706899717988667268999
Q ss_pred CCEEEEEEC-CCEEEEEECCCCE-----------EEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCC------
Q ss_conf 997999985-9919999789970-----------899950799885899992999999999499-299998888------
Q 002519 770 LGRYLAAAA-ENVVSILDAETQA-----------CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS------ 830 (913)
Q Consensus 770 ~~~ll~~~~-dg~I~i~D~~t~~-----------~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s------ 830 (913)
++++++++. +++|.+||+++.. ++.-.....-......|+++|..+.+...| .|..|++..
T Consensus 269 Gkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~ 348 (441)
T d1qnia2 269 GKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYN 348 (441)
T ss_dssp SCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHT
T ss_pred CCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECCCCEEEECCCCCCEEEEECCCHHHHHHC
T ss_conf 87899907759938999832244575256884247996014554766522657855998524431689723542213322
Q ss_pred CCC-CCEEEEEE-----CCCCCEEEEEEECCCCEEEEEE---CCC----------EEEEEECCCCCEE
Q ss_conf 998-71378840-----3999529999907999899998---498----------1999979999189
Q 002519 831 GSE-GECVHELS-----CNGNKFHSCVFHPTYPSLLVIG---CYQ----------SLELWNMSENKTM 879 (913)
Q Consensus 831 ~~~-~~~i~~~~-----~~~~~i~~i~~sp~g~~li~~s---~dg----------~I~iwd~~~~~~~ 879 (913)
+.. ...+..+. +|...+.+.+++|+|++|++++ .|+ .-.++|+...+..
T Consensus 349 ~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~~~ 416 (441)
T d1qnia2 349 GDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEEMK 416 (441)
T ss_dssp TCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSSCE
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCEEE
T ss_conf 67776568645326689877524542238988489965744425576788898764426981597579
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.24 E-value=7.9e-08 Score=75.09 Aligned_cols=246 Identities=8% Similarity=-0.019 Sum_probs=131.2
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEE--CCCCCCEEEEEECCCCCEEEE--EEC-CCEEEEEECCC
Q ss_conf 9998799999069999999968990999978998123685--247987689999899998999--958-99099998689
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EEHSSLITDVRFSPSMPRLAT--SSF-DKTVRVWDADN 706 (913)
Q Consensus 632 H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l--~~h~~~I~~i~fspdg~~Las--gs~-Dg~I~Iwdl~~ 706 (913)
....+.-++|++++++|+++.. +.+..|.+.....+... .......+.+.++++++.++. +.. .+.|..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEECCCCCEEEEEEC-CCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCC
T ss_conf 8999777999489899999938-947899990899769876412899867899878998799999327997899867457
Q ss_pred CCCEEEE----------------ECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEE---EE-----ECCCE
Q ss_conf 9952488----------------415788737999838999099998379929999857990567---85-----17810
Q 002519 707 PGYSLRT----------------FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VF-----KGGTA 762 (913)
Q Consensus 707 ~~~~~~~----------------~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~---~~-----~~~~~ 762 (913)
.+..... .......+.++.|+|++++++++......|.+|+......+. .. ..+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr 196 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCCCCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEE
T ss_conf 88742068664033004764675568898115978889999899820799879999706887166525111127887408
Q ss_pred EEEEECCCCEEEEEEC-CCEEEEEECCCCE--EEEEEC-----------------CCCCCEEEEEECCCCCEEEEEEC--
Q ss_conf 7999039997999985-9919999789970--899950-----------------79988589999299999999949--
Q 002519 763 QMRFQPHLGRYLAAAA-ENVVSILDAETQA--CRLSLQ-----------------GHTKPIDSVCWDPSGELLASVSE-- 820 (913)
Q Consensus 763 ~i~~sp~~~~ll~~~~-dg~I~i~D~~t~~--~~~~l~-----------------~h~~~V~si~~spdg~~l~s~s~-- 820 (913)
.+.|+|++..+++... ++.|.+|+..... .+.... ........+.++|+|++|++...
T Consensus 197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~ 276 (365)
T d1jofa_ 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCC
T ss_conf 99988998669995158998999995598753778731240245565566654444357763169989999789971357
Q ss_pred C-----EEEEEECCCCCCCC---EEEEEECCCCCEEEEEEEC-CCCEEEEEE-CCCEEEEEECCCCCE
Q ss_conf 9-----29999888899871---3788403999529999907-999899998-498199997999918
Q 002519 821 D-----SVRVWTVGSGSEGE---CVHELSCNGNKFHSCVFHP-TYPSLLVIG-CYQSLELWNMSENKT 878 (913)
Q Consensus 821 d-----~I~iwdi~s~~~~~---~i~~~~~~~~~i~~i~~sp-~g~~li~~s-~dg~I~iwd~~~~~~ 878 (913)
+ .|..|++....... .+......+.....++++| ++++++++. .++.|.+|+++....
T Consensus 277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l 344 (365)
T d1jofa_ 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred CCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCCEEEEEECCCCEEEEEEEECCCC
T ss_conf 87542279999856887144676766777679986478964899999999967999499999828867
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.23 E-value=1.2e-07 Score=73.71 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=27.0
Q ss_pred EEEEEECCCCCEEEEEEC-CCEEEEEECCCCCCEEEE----ECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCC
Q ss_conf 689999899998999958-990999986899952488----4157887379998389990999983799299998579
Q 002519 678 ITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRT----FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 750 (913)
Q Consensus 678 I~~i~fspdg~~Lasgs~-Dg~I~Iwdl~~~~~~~~~----~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~ 750 (913)
+.++.|+|+++++++++. ...|++|++...+..... ..........+.|+|+++.++++...++.|.+|++..
T Consensus 147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECC
T ss_conf 159788899998998207998799997068871665251111278874089998899866999515899899999559
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.19 E-value=3.5e-07 Score=69.74 Aligned_cols=235 Identities=11% Similarity=0.047 Sum_probs=131.5
Q ss_pred CEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 13656852499987999990699999999689909999789981236852479876899998999989999589909999
Q 002519 623 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 702 (913)
Q Consensus 623 ~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iw 702 (913)
.+.+..+.... .+..+++++||+++++...+++|+.|+... + ...+......+.+++|.++++++++...++.+.+|
T Consensus 18 ~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~ 94 (302)
T d2p4oa1 18 AKIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV 94 (302)
T ss_dssp EEEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCEEEECCCCC-CCCCEEECCCCCEEEEECCCCEEEEEECCC-C-EEEEECCCCCCCEEEECCCCCEEEEECCCCEEEEE
T ss_conf 20788888998-847877999988999968899899990899-8-89997179985368986778869983289537888
Q ss_pred ECCCCCCEEEEE--CCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC-------------CEEEEEE
Q ss_conf 868999524884--1578873799983899909999837992999985799056785178-------------1079990
Q 002519 703 DADNPGYSLRTF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-------------TAQMRFQ 767 (913)
Q Consensus 703 dl~~~~~~~~~~--~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~-------------~~~i~~s 767 (913)
+..........+ .........+.+.+++. ++++.+.++.+..++............. ...+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~- 172 (302)
T d2p4oa1 95 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR- 172 (302)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE-
T ss_pred EECCCCCCEEECCCCCCCCCCCEEEECCCCC-EEEECCCCCCCEEEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCC-
T ss_conf 7101111012102357863221667715797-87503565541024216873036751886401431576322432011-
Q ss_pred CCCCEEEEEE-CCCEEEEEECCCCEEEE--EECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECC
Q ss_conf 3999799998-59919999789970899--950799885899992999999999499-2999988889987137884039
Q 002519 768 PHLGRYLAAA-AENVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 843 (913)
Q Consensus 768 p~~~~ll~~~-~dg~I~i~D~~t~~~~~--~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~ 843 (913)
++..++++. ..+.|+.++........ ...........++++++|+++++...+ .|..|+... +...+......
T Consensus 173 -~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G--~~~~~~~~~~~ 249 (302)
T d2p4oa1 173 -FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR--STTIIAQAEQG 249 (302)
T ss_dssp -ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC--CEEEEECGGGT
T ss_pred -CCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCEEEECCCC--CEEEEEECCCC
T ss_conf -698304403788769863443333234531015899875237879999999974899189987899--78999963789
Q ss_pred CCCEEEEEE---ECCCCEEEEEECC
Q ss_conf 995299999---0799989999849
Q 002519 844 GNKFHSCVF---HPTYPSLLVIGCY 865 (913)
Q Consensus 844 ~~~i~~i~~---sp~g~~li~~s~d 865 (913)
....++++| .+|++.|++++..
T Consensus 250 ~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 250 VIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCCEEEEECCCCCCCCEEEEECCC
T ss_conf 8882489970878878989999889
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=1.4e-06 Score=64.72 Aligned_cols=222 Identities=14% Similarity=0.147 Sum_probs=142.2
Q ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCC---CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC-CCEEEEE
Q ss_conf 68524999879999906999999996899---0999978998123685247987689999899998999958-9909999
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGHDK---KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVW 702 (913)
Q Consensus 627 ~~l~~H~~~V~~i~fspdg~~Lasgs~Dg---~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~-Dg~I~Iw 702 (913)
..+..+...+...+|||||+.||....+. .+.+.+...+. ...+..+...+....|+|+++.++.... ++...++
T Consensus 32 ~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~ 110 (269)
T d2hqsa1 32 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 110 (269)
T ss_dssp EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCC-EEEEEEEECCCCCCEECCCCCEEEEEEECCCCCCEE
T ss_conf 7986589842603887899989999815267513443113675-067764202454302448898646764027864100
Q ss_pred ECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCC--EEEEECCCCEEEEEEE--CCCEEEEEECCCCEEEEEEC
Q ss_conf 8689995248841578873799983899909999837992--9999857990567851--78107999039997999985
Q 002519 703 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 703 dl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~--I~iwdi~~~~~~~~~~--~~~~~i~~sp~~~~ll~~~~ 778 (913)
.......................+.+++..++++...++. |.+.++.......... .......|++++..++....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 190 (269)
T d2hqsa1 111 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 190 (269)
T ss_dssp EEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred ECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 00222122000010144211454345544330000126874386542133100010001222234322345430577860
Q ss_pred CC---EEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC---C-EEEEEECCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 99---1999978997089995079988589999299999999949---9-299998888998713788403999529999
Q 002519 779 EN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 851 (913)
Q Consensus 779 dg---~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~---d-~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~ 851 (913)
++ .+.+++...+... +...........|+|||+.|+..+. . .+.++++..+ . ...+......+...+
T Consensus 191 ~~~~~~i~~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~---~-~~~lt~~~g~~~~p~ 264 (269)
T d2hqsa1 191 NGGQQHIAKQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR---F-KARLPATDGQVKFPA 264 (269)
T ss_dssp CSSCEEEEEEETTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC---C-EEECCCSSSEEEEEE
T ss_pred CCCCEEEEEEECCCCCCE--EEECCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCC---C-EEEEECCCCCEEEEE
T ss_conf 588012567603564405--8506865445589899999999981799847999999999---7-799857998588378
Q ss_pred EECC
Q ss_conf 9079
Q 002519 852 FHPT 855 (913)
Q Consensus 852 ~sp~ 855 (913)
|+|-
T Consensus 265 WSP~ 268 (269)
T d2hqsa1 265 WSPY 268 (269)
T ss_dssp ECCC
T ss_pred ECCC
T ss_conf 2898
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.07 E-value=8.4e-07 Score=66.56 Aligned_cols=235 Identities=10% Similarity=-0.007 Sum_probs=126.1
Q ss_pred CCEEEEEEECCCCEEEEEE-CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEE
Q ss_conf 9879999906999999996-899099997899812368524798768999989999899995899099998689995248
Q 002519 634 SKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 712 (913)
Q Consensus 634 ~~V~~i~fspdg~~Lasgs-~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~ 712 (913)
-.-.+++++++|.++++.. ..+.|..++...................+++++++.++++....+.|++++..+ ...+.
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~-~~~~~ 92 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSN-NQTVL 92 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCS-CCEEC
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECEEEEEEECC-CEEEE
T ss_conf 98788999699999999718998899993899668974369866840899938998898631000035542112-00000
Q ss_pred EECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE---ECCCEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 841578873799983899909999837992999985799056785---17810799903999799998599199997899
Q 002519 713 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAET 789 (913)
Q Consensus 713 ~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~---~~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t 789 (913)
.. .......++++.+++. ++++-..+..+..++.......... ......+.+.+++..+++...++.|..++...
T Consensus 93 ~~-~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~ 170 (260)
T d1rwia_ 93 PF-DGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 170 (260)
T ss_dssp CC-CSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred EE-EEEEECCCCCCCCCCE-EEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCC
T ss_conf 01-0000000002455320-575033555321123222201223203667752054548998864102564332223431
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEE
Q ss_conf 70899950799885899992999999999499-29999888899871378840399952999990799989999849819
Q 002519 790 QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 868 (913)
Q Consensus 790 ~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~li~~s~dg~I 868 (913)
................++++++|+++++.... .|..++.... ...............+++++++..+++-..++.|
T Consensus 171 ~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~---~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI 247 (260)
T d1rwia_ 171 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST---TSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 247 (260)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS---CCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCC---EEEEECCCCCCCEEEEEEECCCCEEEEECCCCEE
T ss_conf 0012221011478763123100013432148998999969997---6999706998981799990899999997999989
Q ss_pred EEEECC
Q ss_conf 999799
Q 002519 869 ELWNMS 874 (913)
Q Consensus 869 ~iwd~~ 874 (913)
+.++..
T Consensus 248 ~~i~~~ 253 (260)
T d1rwia_ 248 VKLTSL 253 (260)
T ss_dssp EEECCC
T ss_pred EEEECC
T ss_conf 999599
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.04 E-value=1.6e-06 Score=64.26 Aligned_cols=228 Identities=12% Similarity=0.020 Sum_probs=81.8
Q ss_pred EEEEECCCCCEEEEEE-CCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf 8999989999899995-899099998689995248841578873799983899909999837992999985799056785
Q 002519 679 TDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 757 (913)
Q Consensus 679 ~~i~fspdg~~Lasgs-~Dg~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~ 757 (913)
.+|++.++++++++.. ..+.|..++..........+. .......+++.+++. ++++....+.+++++..+.......
T Consensus 17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~~~~~~ 94 (260)
T d1rwia_ 17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN-GLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVLPF 94 (260)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCC-SCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEECCC
T ss_pred CEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCC-CCCCCEEEEECCCCC-EEEEEEEECEEEEEEECCCEEEEEE
T ss_conf 88999699999999718998899993899668974369-866840899938998-8986310000355421120000001
Q ss_pred E--CCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCC
Q ss_conf 1--781079990399979999859919999789970899950799885899992999999999499-2999988889987
Q 002519 758 K--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG 834 (913)
Q Consensus 758 ~--~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~ 834 (913)
. .....+++.+++..+++-.....+..++...................++++++++++++...+ .|..++....
T Consensus 95 ~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~--- 171 (260)
T d1rwia_ 95 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN--- 171 (260)
T ss_dssp CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC---
T ss_pred EEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCC---
T ss_conf 00000000024553205750335553211232222012232036677520545489988641025643322234310---
Q ss_pred CEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEC-CCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 137884039995299999079998999984981999979999189982-66897689999279999999967982999
Q 002519 835 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT-AHEGLIAALAVSTETGYVASASHDKFVKL 911 (913)
Q Consensus 835 ~~i~~~~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~~~~-~h~~~V~~l~~spdg~~Lasgs~DG~I~I 911 (913)
...............+++.+++..+++....+.|..++........+. ..-.....+++++++.++++-..+++|+.
T Consensus 172 ~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~ 249 (260)
T d1rwia_ 172 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVK 249 (260)
T ss_dssp CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred EEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCEEEEECCCCEEEE
T ss_conf 012221011478763123100013432148998999969997699970699898179999089999999799998999
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.9e-06 Score=63.64 Aligned_cols=259 Identities=10% Similarity=0.087 Sum_probs=106.7
Q ss_pred CCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEC-CCCCCE-----------------EEEEECCCCCEEEEEEC
Q ss_conf 987999990699999999689909999789981236852-479876-----------------89999899998999958
Q 002519 634 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLI-----------------TDVRFSPSMPRLATSSF 695 (913)
Q Consensus 634 ~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~-~h~~~I-----------------~~i~fspdg~~Lasgs~ 695 (913)
..+....|||||+.||... ++.|++.+...+..+.... +....| ..+.|+||+++||....
T Consensus 114 ~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~ 192 (465)
T d1xfda1 114 AKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI 192 (465)
T ss_dssp CCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred CCCCEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCCCCEEEECCCCCEEEEEEE
T ss_conf 4311002426785699996-132999954899658971126766044366431001230366434897798986899995
Q ss_pred -CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---------CCEEEE
Q ss_conf -9909999868999524884157887379998389990999983799299998579905678517---------810799
Q 002519 696 -DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---------GTAQMR 765 (913)
Q Consensus 696 -Dg~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---------~~~~i~ 765 (913)
+..|..+.+..... .....+..+.+-.-+... ....+.++|+..+........ -...+.
T Consensus 193 D~s~V~~~~~~~~~~------~~~p~~~~~~Yp~~G~~n-----p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~ 261 (465)
T d1xfda1 193 NDSRVPIMELPTYTG------SIYPTVKPYHYPKAGSEN-----PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVK 261 (465)
T ss_dssp ECTTSCEEEECCCSS------SSSCCCEEEECCBTTSCC-----CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEE
T ss_pred CCCCCCEEECCCCCC------CCCCEEEEEECCCCCCCC-----CCEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEE
T ss_conf 366661464123445------444313345302568889-----721379983689817899952576766663045668
Q ss_pred EECCCCEEEEEEC-C---CEEEEEECCCCEEEEEECC-CCCCE----EEEEECCCCCEEE--EEE----CCEEEEEECCC
Q ss_conf 9039997999985-9---9199997899708999507-99885----8999929999999--994----99299998888
Q 002519 766 FQPHLGRYLAAAA-E---NVVSILDAETQACRLSLQG-HTKPI----DSVCWDPSGELLA--SVS----EDSVRVWTVGS 830 (913)
Q Consensus 766 ~sp~~~~ll~~~~-d---g~I~i~D~~t~~~~~~l~~-h~~~V----~si~~spdg~~l~--s~s----~d~I~iwdi~s 830 (913)
|.+++..++.... + ..|.++|..++++...+.. ...+| ....|+++|+.++ ..+ .+.+..+++..
T Consensus 262 W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~ 341 (465)
T d1xfda1 262 WATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (465)
T ss_dssp ESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred ECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEEEEEEEEEECCCCCEEEEEECC
T ss_conf 75799389999741003013799707999278778972785173567860574689805777765431667168998315
Q ss_pred C---CCCCEEEEEECCCCCEEEE-EEECCCCEEEEEECCC-----EEEEEECCCCCEEE-E---CCCCCCEEEEEEECCC
Q ss_conf 9---9871378840399952999-9907999899998498-----19999799991899-8---2668976899992799
Q 002519 831 G---SEGECVHELSCNGNKFHSC-VFHPTYPSLLVIGCYQ-----SLELWNMSENKTMT-L---TAHEGLIAALAVSTET 897 (913)
Q Consensus 831 ~---~~~~~i~~~~~~~~~i~~i-~~sp~g~~li~~s~dg-----~I~iwd~~~~~~~~-~---~~h~~~V~~l~~spdg 897 (913)
. .....+..+......|..+ .|..+++.|+..+... .|+-.++....... + .........+.|+|++
T Consensus 342 ~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~ 421 (465)
T d1xfda1 342 SQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSM 421 (465)
T ss_dssp SSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred CCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCCCEEEEEECCCC
T ss_conf 66667886269822699219977898389999999996899982689999778998605531446788987999999999
Q ss_pred CEEEEEE
Q ss_conf 9999996
Q 002519 898 GYVASAS 904 (913)
Q Consensus 898 ~~Lasgs 904 (913)
++++..+
T Consensus 422 ~y~v~~~ 428 (465)
T d1xfda1 422 DFFLLKC 428 (465)
T ss_dssp SEEEEEC
T ss_pred CEEEEEE
T ss_conf 9999980
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=2.2e-06 Score=63.00 Aligned_cols=234 Identities=12% Similarity=0.153 Sum_probs=122.0
Q ss_pred EEEEEECCCCEEEEEEC-CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEE-
Q ss_conf 99999069999999968-9909999789981236852479876899998999989999589909999868999524884-
Q 002519 637 ICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF- 714 (913)
Q Consensus 637 ~~i~fspdg~~Lasgs~-Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~~~- 714 (913)
.++-|||||++||.... +..|..+.+.... ......+..+.+-.-|.... ...+.++|++.+.......
T Consensus 176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~-----~~~~p~~~~~~Yp~~G~~np----~~~l~v~d~~~~~~~~~~~~ 246 (465)
T d1xfda1 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYT-----GSIYPTVKPYHYPKAGSENP----SISLHVIGLNGPTHDLEMMP 246 (465)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCS-----SSSSCCCEEEECCBTTSCCC----EEEEEEEESSSSCCCEECCC
T ss_pred CEEEECCCCCEEEEEEECCCCCCEEECCCCC-----CCCCCEEEEEECCCCCCCCC----CEEEEEEECCCCCEEEEEEC
T ss_conf 3489779898689999536666146412344-----54443133453025688897----21379983689817899952
Q ss_pred ----CCCCCCEEEEEECCCCCEEEEEEECC---CCEEEEECCCCEEEEEEECC--------CEEEEEECCCCEEEE--EE
Q ss_conf ----15788737999838999099998379---92999985799056785178--------107999039997999--98
Q 002519 715 ----MGHSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGSCTRVFKGG--------TAQMRFQPHLGRYLA--AA 777 (913)
Q Consensus 715 ----~~h~~~I~si~fspd~~~ll~sgs~D---g~I~iwdi~~~~~~~~~~~~--------~~~i~~sp~~~~ll~--~~ 777 (913)
......+..+.|.++++.++.....+ ..|.++|..++++...+... .....|.+++..++. ..
T Consensus 247 ~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~s 326 (465)
T d1xfda1 247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI 326 (465)
T ss_dssp CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEEEEEEEE
T ss_conf 57676666304566875799389999741003013799707999278778972785173567860574689805777765
Q ss_pred -CCC--EEEEEECC------CCEEEEEECCCCCCEEEE-EECCCCCEEE-EEECC-----EEEEEECCCCCCCCEEEEEE
Q ss_conf -599--19999789------970899950799885899-9929999999-99499-----29999888899871378840
Q 002519 778 -AEN--VVSILDAE------TQACRLSLQGHTKPIDSV-CWDPSGELLA-SVSED-----SVRVWTVGSGSEGECVHELS 841 (913)
Q Consensus 778 -~dg--~I~i~D~~------t~~~~~~l~~h~~~V~si-~~spdg~~l~-s~s~d-----~I~iwdi~s~~~~~~i~~~~ 841 (913)
.++ .++.+++. .++.+..+....-.|..+ .|+.+++.|+ ++..+ .++-.++..+....|+....
T Consensus 327 e~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~ 406 (465)
T d1xfda1 327 PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDL 406 (465)
T ss_dssp CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTS
T ss_pred EECCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEECCCC
T ss_conf 43166716899831566667886269822699219977898389999999996899982689999778998605531446
Q ss_pred CCCCCEEEEEEECCCCEEEEEECC---CEEEEEECCCCCEE
Q ss_conf 399952999990799989999849---81999979999189
Q 002519 842 CNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTM 879 (913)
Q Consensus 842 ~~~~~i~~i~~sp~g~~li~~s~d---g~I~iwd~~~~~~~ 879 (913)
........+.|+|++.+++..+.. -.+.+++..+++.+
T Consensus 407 ~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~ 447 (465)
T d1xfda1 407 VENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKM 447 (465)
T ss_dssp SSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEE
T ss_conf 78898799999999999999800699984999999999799
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.90 E-value=5.3e-06 Score=59.90 Aligned_cols=237 Identities=12% Similarity=0.117 Sum_probs=126.3
Q ss_pred CCCCCEEEEEEECCCCEEEEEEC-------CCCEEEEECCCCCEEEEECCC----CCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 49998799999069999999968-------990999978998123685247----9876899998999989999589909
Q 002519 631 ASTSKVICCHFSSDGKLLATGGH-------DKKAVLWHTDTLKSKTNLEEH----SSLITDVRFSPSMPRLATSSFDKTV 699 (913)
Q Consensus 631 ~H~~~V~~i~fspdg~~Lasgs~-------Dg~V~iwd~~t~~~~~~l~~h----~~~I~~i~fspdg~~Lasgs~Dg~I 699 (913)
..-...-.++|.++|+++++... +++|..||..++......... ...-..+.|.++++.|+++.....|
T Consensus 15 ~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i 94 (314)
T d1pjxa_ 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGL 94 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred CCCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCEE
T ss_conf 59989717399699999999875402345299999998999959999777655678853069990799989999779839
Q ss_pred EEEECCCCCCEEEEECC-CC----CCEEEEEECCCCCEEEEEEEC---------------CCCEEEEECCCCEEEEEEE-
Q ss_conf 99986899952488415-78----873799983899909999837---------------9929999857990567851-
Q 002519 700 RVWDADNPGYSLRTFMG-HS----ASVMSLDFHPNKDDLICSCDG---------------DGEIRYWSINNGSCTRVFK- 758 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~-h~----~~I~si~fspd~~~ll~sgs~---------------Dg~I~iwdi~~~~~~~~~~- 758 (913)
..++.+. .. ...+.. .. ...+.+.+.+++..++ +-.. +|.|+.++.. ++......
T Consensus 95 ~~~~~~g-~~-~~~~~~~~~g~~~~~pndl~~d~~G~lyv-td~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~ 170 (314)
T d1pjxa_ 95 LVVQTDG-TF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWI-TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA 170 (314)
T ss_dssp EEEETTS-CE-EECCSBCTTSCBCBCCCEEEECTTSCEEE-EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE
T ss_pred EEEECCC-CE-EEEEECCCCCCCCCCCCEEEECCCCCEEE-ECCCCCCCCCCCCCEECCCCCEEEEEEEC-CCEEEEECC
T ss_conf 9994777-47-99973343245457872789888998999-14866754320110002688438999525-740375078
Q ss_pred -CCCEEEEEECCCC----EEEEE-ECCCEEEEEECCCCEEE------EEECC-CCCCEEEEEECCCCCEEEEEECC-EEE
Q ss_conf -7810799903999----79999-85991999978997089------99507-99885899992999999999499-299
Q 002519 759 -GGTAQMRFQPHLG----RYLAA-AAENVVSILDAETQACR------LSLQG-HTKPIDSVCWDPSGELLASVSED-SVR 824 (913)
Q Consensus 759 -~~~~~i~~sp~~~----~ll~~-~~dg~I~i~D~~t~~~~------~~l~~-h~~~V~si~~spdg~~l~s~s~d-~I~ 824 (913)
.....++|++++. .++++ ...+.|..||+.....+ ..+.. .......+++..+|+++++.... .|.
T Consensus 171 ~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~ 250 (314)
T d1pjxa_ 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred CCEEEEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCEEE
T ss_conf 53221369978877630379998602431177611676543015689971335666410257834785799982799999
Q ss_pred EEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECC
Q ss_conf 998888998713788403999529999907999899998-49819999799
Q 002519 825 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS 874 (913)
Q Consensus 825 iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~li~~s-~dg~I~iwd~~ 874 (913)
+||...+ ..+..+........+|+|.++++.|++.. .++.|..+++.
T Consensus 251 ~~dp~~g---~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 251 VFGPDGG---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EECTTCB---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEECCCC---EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 9969999---79999979999878999928989999998789919999789
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.76 E-value=1.4e-05 Score=56.48 Aligned_cols=196 Identities=11% Similarity=0.109 Sum_probs=119.0
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCC----CCEEEEEECCCCCEEEEEECC-------------C
Q ss_conf 87999990699999999689909999789981236852479----876899998999989999589-------------9
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS----SLITDVRFSPSMPRLATSSFD-------------K 697 (913)
Q Consensus 635 ~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~----~~I~~i~fspdg~~Lasgs~D-------------g 697 (913)
.-..++|.+++..|+++.....|..++.+............ ...+++++.+++.+.++-... .
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~ 151 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK 151 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCEECCC
T ss_conf 53069990799989999779839999477747999733432454578727898889989991486675432011000268
Q ss_pred EEEEEECCCCCCEEEEECCCCCCEEEEEECCCCC----EEEEEEECCCCEEEEECCCCEEEE------EEEC----CCEE
Q ss_conf 0999986899952488415788737999838999----099998379929999857990567------8517----8107
Q 002519 698 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD----DLICSCDGDGEIRYWSINNGSCTR------VFKG----GTAQ 763 (913)
Q Consensus 698 ~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~----~ll~sgs~Dg~I~iwdi~~~~~~~------~~~~----~~~~ 763 (913)
.-+||.++..+....... .-...+.++|+++++ .++++-...+.|..|++.....+. .+.. ....
T Consensus 152 ~G~v~~~~~dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdG 230 (314)
T d1pjxa_ 152 FGSIYCFTTDGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG 230 (314)
T ss_dssp CEEEEEECTTSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred CCEEEEEEECCCEEEEEC-CCCEEEEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEE
T ss_conf 843899952574037507-8532213699788776303799986024311776116765430156899713356664102
Q ss_pred EEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEE-ECC-EEEEEECCCC
Q ss_conf 9990399979999859919999789970899950799885899992999999999-499-2999988889
Q 002519 764 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-SED-SVRVWTVGSG 831 (913)
Q Consensus 764 i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~-s~d-~I~iwdi~s~ 831 (913)
+++..+++.+++....+.|.+||.+.+..+..+.......++++|.++++.|++. +.+ .|..+++...
T Consensus 231 iavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEECCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCC
T ss_conf 5783478579998279999999699997999997999987899992898999999878991999978999
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.75 E-value=1.5e-05 Score=56.20 Aligned_cols=228 Identities=13% Similarity=0.116 Sum_probs=117.7
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC--CEEEEEECCCCCC
Q ss_conf 99987999990699999999689909999789981236852479876899998999989999589--9099998689995
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGY 709 (913)
Q Consensus 632 H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~D--g~I~Iwdl~~~~~ 709 (913)
....+..++|.++|+++++-...+.|+.|+.+.......+.........++|.++++++++...+ ....++.+.....
T Consensus 38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CCCCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCC
T ss_conf 88674707899999999997799999999899995999994899870389999999999995689731104998738996
Q ss_pred EEEEECCC---CCCEEEEEECCCCCEEEEEEEC------CCCEEEEECCCCEEEEEEE--CCCEEEEEECCCCEEEEEEC
Q ss_conf 24884157---8873799983899909999837------9929999857990567851--78107999039997999985
Q 002519 710 SLRTFMGH---SASVMSLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA 778 (913)
Q Consensus 710 ~~~~~~~h---~~~I~si~fspd~~~ll~sgs~------Dg~I~iwdi~~~~~~~~~~--~~~~~i~~sp~~~~ll~~~~ 778 (913)
.+..+..+ ...+..+.+.++|. ++++... .+.+..++........... .....++|+++++.++++..
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~ 196 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET 196 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred EEEEECCCCCCCCCCCCEEEEECCC-EEECCCCCCCCCCCCEEEEEECCCCEEEEEEECCCEEEEEEECCCCCEEEEECC
T ss_conf 3644426777555875226773065-320013540025742157884166335788612330100010122212787404
Q ss_pred -CCEEEEEECCCC-E---EE----EEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEEC------
Q ss_conf -991999978997-0---89----9950799885899992999999999499-299998888998713788403------
Q 002519 779 -ENVVSILDAETQ-A---CR----LSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC------ 842 (913)
Q Consensus 779 -dg~I~i~D~~t~-~---~~----~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~------ 842 (913)
.+.|..|++... . .. ............++++.+|+++++...+ .|.+|+. .+ +.+.++..
T Consensus 197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G---~~l~~i~~P~~~~~ 272 (319)
T d2dg1a1 197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG---YPIGQILIPGRDEG 272 (319)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS---CEEEEEECTTGGGT
T ss_pred CCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECC-CC---CEEEEEECCCCCCC
T ss_conf 689147999769983620246333312577641036417389999999848998999979-99---59889968875778
Q ss_pred CCCCEEEEEEECCCCEEEEEEC
Q ss_conf 9995299999079998999984
Q 002519 843 NGNKFHSCVFHPTYPSLLVIGC 864 (913)
Q Consensus 843 ~~~~i~~i~~sp~g~~li~~s~ 864 (913)
+...+.+++|.++...+++...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 273 HMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp CSCBCCEEEECTTSCEEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEECC
T ss_conf 6750466778079988999857
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.73 E-value=1.6e-05 Score=55.82 Aligned_cols=229 Identities=10% Similarity=0.129 Sum_probs=110.6
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCC------CCCEEEEEECCCCC-EEEEE-ECCCEEEEEECCC
Q ss_conf 8799999069999999968990999978998123685247------98768999989999-89999-5899099998689
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH------SSLITDVRFSPSMP-RLATS-SFDKTVRVWDADN 706 (913)
Q Consensus 635 ~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h------~~~I~~i~fspdg~-~Lasg-s~Dg~I~Iwdl~~ 706 (913)
.-..++++++++++++-..+..|++||.+ ++.+..+... ...-..+.+..+.. .+++. +.++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC-
T ss_conf 90079994999899997998989999699-9999981665788664226630001234455200004775310000025-
Q ss_pred CCCEEEEEC-CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC-----CCEEEEEECCCCEEEEEECCC
Q ss_conf 995248841-57887379998389990999983799299998579905678517-----810799903999799998599
Q 002519 707 PGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAEN 780 (913)
Q Consensus 707 ~~~~~~~~~-~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~-----~~~~i~~sp~~~~ll~~~~dg 780 (913)
+.....+. ........+++.+++. ++++....+.+.+++.. ++.+..+.. ....+++.+++..+++....+
T Consensus 102 -g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~ 178 (279)
T d1q7fa_ 102 -GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH 178 (279)
T ss_dssp -SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred -CCCEEECCCCCCCCCCEECCCCCCC-EEEEEECCCEEEEECCC-CCEEECCCCCCCCCCCCEEEECCCEEEEEEECCCC
T ss_conf -6302403888642542000014784-79996326325676268-75010022001025662432012001786201355
Q ss_pred EEEEEECCCCEEEEEEC--CCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEEEC--CCCCEEEEEEEC
Q ss_conf 19999789970899950--799885899992999999999499--299998888998713788403--999529999907
Q 002519 781 VVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC--NGNKFHSCVFHP 854 (913)
Q Consensus 781 ~I~i~D~~t~~~~~~l~--~h~~~V~si~~spdg~~l~s~s~d--~I~iwdi~s~~~~~~i~~~~~--~~~~i~~i~~sp 854 (913)
.|.+||... +.+..+. +.......|+++++|+++++-..+ .|.+|+.. + +.+..+.. .......+++.+
T Consensus 179 ~V~~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G---~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 179 CVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp EEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEEEEEET
T ss_pred CEEEEECCC-CEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC-C---CEEEEEECCCCCCCEEEEEEEC
T ss_conf 100230479-4445301132114876232314786999978998089999999-9---9999996888889883799908
Q ss_pred CCCEEEEEECCCEEEEEECC
Q ss_conf 99989999849819999799
Q 002519 855 TYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 855 ~g~~li~~s~dg~I~iwd~~ 874 (913)
++. |+++..++.|++|...
T Consensus 254 dG~-l~V~~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 254 DGS-VVLASKDYRLYIYRYV 272 (279)
T ss_dssp TTE-EEEEETTTEEEEEECS
T ss_pred CCC-EEEEECCCEEEEEEEE
T ss_conf 991-9999189969998722
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.71 E-value=1.9e-05 Score=55.23 Aligned_cols=187 Identities=13% Similarity=0.075 Sum_probs=103.5
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCE-EEEE--CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 999879999906999999996899099997899812-3685--2479876899998999989999589909999868999
Q 002519 632 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNL--EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 708 (913)
Q Consensus 632 H~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~-~~~l--~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~ 708 (913)
....+.+++|++||+++++...++.+.+|+...... ...+ .........+.+.++++++++.+.++.|..++.....
T Consensus 66 ~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~ 145 (302)
T d2p4oa1 66 VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS 145 (302)
T ss_dssp CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEECCCCC
T ss_conf 79985368986778869983289537888710111101210235786322166771579787503565541024216873
Q ss_pred CEEEEEC---------CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEE-----EECCCEEEEEECCCCEEE
Q ss_conf 5248841---------57887379998389990999983799299998579905678-----517810799903999799
Q 002519 709 YSLRTFM---------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-----FKGGTAQMRFQPHLGRYL 774 (913)
Q Consensus 709 ~~~~~~~---------~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~-----~~~~~~~i~~sp~~~~ll 774 (913)
..+.... ........+.+. +..++++....+.|+.+++........ .......+++.+++..++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~v 223 (302)
T d2p4oa1 146 GSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG 223 (302)
T ss_dssp EEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE
T ss_pred CEEEECCCCCCEEECCCCCCCCCCCCCC--CCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEE
T ss_conf 0367518864014315763224320116--98304403788769863443333234531015899875237879999999
Q ss_pred EEECCCEEEEEECCCCEE-EEEECCCCCCEEEEEE---CCCCCEEEEEEC
Q ss_conf 998599199997899708-9995079988589999---299999999949
Q 002519 775 AAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCW---DPSGELLASVSE 820 (913)
Q Consensus 775 ~~~~dg~I~i~D~~t~~~-~~~l~~h~~~V~si~~---spdg~~l~s~s~ 820 (913)
+...++.|..++...... +......-...++++| .+|++.|++++.
T Consensus 224 a~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~ 273 (302)
T d2p4oa1 224 ATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 273 (302)
T ss_dssp ECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred EECCCCCEEEECCCCCEEEEEECCCCCCCCEEEEECCCCCCCCEEEEECC
T ss_conf 97489918998789978999963789888248997087887898999988
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.61 E-value=3.5e-05 Score=53.11 Aligned_cols=227 Identities=13% Similarity=0.134 Sum_probs=133.0
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECC------CCCCEEEEEECCCCCEEEEEE-ECCCCEEEEECC
Q ss_conf 7689999899998999958990999986899952488415------788737999838999099998-379929999857
Q 002519 677 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSC-DGDGEIRYWSIN 749 (913)
Q Consensus 677 ~I~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~~~~~------h~~~I~si~fspd~~~ll~sg-s~Dg~I~iwdi~ 749 (913)
....|+++++++++++-..+..|++||.+ +..+..+.. .......+.+..+...++++. +.++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~--G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEECC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 90079994999899997998989999699--9999981665788664226630001234455200004775310000025
Q ss_pred CCEEEEEEEC----CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEE--CCCCCCEEEEEECCCCCEEEEEECC-E
Q ss_conf 9905678517----8107999039997999985991999978997089995--0799885899992999999999499-2
Q 002519 750 NGSCTRVFKG----GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL--QGHTKPIDSVCWDPSGELLASVSED-S 822 (913)
Q Consensus 750 ~~~~~~~~~~----~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l--~~h~~~V~si~~spdg~~l~s~s~d-~ 822 (913)
+.....+.. ....+.+.+++..+++....+.+.+++... +.+..+ ..+......+++.++++++++.... .
T Consensus 102 -g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 102 -GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp -SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred -CCCEEECCCCCCCCCCEECCCCCCCEEEEEECCCEEEEECCCC-CEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCC
T ss_conf -6302403888642542000014784799963263256762687-50100220010256624320120017862013551
Q ss_pred EEEEECCCCCCCCEEEEEE--CCCCCEEEEEEECCCCEEEEEECC-CEEEEEECCCCCEE-EEC--CCCCCEEEEEEECC
Q ss_conf 9999888899871378840--399952999990799989999849-81999979999189-982--66897689999279
Q 002519 823 VRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM-TLT--AHEGLIAALAVSTE 896 (913)
Q Consensus 823 I~iwdi~s~~~~~~i~~~~--~~~~~i~~i~~sp~g~~li~~s~d-g~I~iwd~~~~~~~-~~~--~h~~~V~~l~~spd 896 (913)
|++|+... ..+..+. ........+++.++++.+++-..+ ..|.+|+.. ++.+ .+. ........+++.++
T Consensus 180 V~~~d~~G----~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~d 254 (279)
T d1q7fa_ 180 VKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDD 254 (279)
T ss_dssp EEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETT
T ss_pred EEEEECCC----CEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC-CCEEEEEECCCCCCCEEEEEEECC
T ss_conf 00230479----4445301132114876232314786999978998089999999-999999968888898837999089
Q ss_pred CCEEEEEECCCCEEEEC
Q ss_conf 99999996798299909
Q 002519 897 TGYVASASHDKFVKLWK 913 (913)
Q Consensus 897 g~~Lasgs~DG~I~IWd 913 (913)
+.+++ ++.+.+|++|+
T Consensus 255 G~l~V-~~~n~~v~~fr 270 (279)
T d1q7fa_ 255 GSVVL-ASKDYRLYIYR 270 (279)
T ss_dssp TEEEE-EETTTEEEEEE
T ss_pred CCEEE-EECCCEEEEEE
T ss_conf 91999-91899699987
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.61 E-value=3.5e-05 Score=53.09 Aligned_cols=231 Identities=9% Similarity=0.044 Sum_probs=119.3
Q ss_pred EEECC--CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC-CC-----EEEEEECCCCCCEE
Q ss_conf 99069--999999968990999978998123685247987689999899998999958-99-----09999868999524
Q 002519 640 HFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DK-----TVRVWDADNPGYSL 711 (913)
Q Consensus 640 ~fspd--g~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~-Dg-----~I~Iwdl~~~~~~~ 711 (913)
..+|| |+.+|..+ ++.|++.|+..++. ..+..+...+...+|+|||+.||.... ++ .|.+++... +. .
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~-g~-~ 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN-GE-I 80 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT-TE-E
T ss_pred CCCCCCCCCEEEEEE-CCCEEEEECCCCCE-EEEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECC-CC-E
T ss_conf 258887999999990-99689998999987-99766998526779878999899998628987722899998259-95-2
Q ss_pred EEECC-------CCCCEEEEEECCCCCEEEEEEECC-----CCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEECC
Q ss_conf 88415-------788737999838999099998379-----929999857990567851781079990399979999859
Q 002519 712 RTFMG-------HSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE 779 (913)
Q Consensus 712 ~~~~~-------h~~~I~si~fspd~~~ll~sgs~D-----g~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ll~~~~d 779 (913)
..+.. .........|+|+++.++++...+ ..+...+............... ..+.+++..++.....
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 159 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPAT-HILFADGRRVIGRNTF 159 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCS-EEEEETTEEEEEESCS
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCC-EEEECCCCEEEEEECC
T ss_conf 886416887547644434310279887799997137876520246515877606880178652-3464699849886204
Q ss_pred ------------CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEEECCCC
Q ss_conf ------------919999789970899950799885899992999999999499--299998888998713788403999
Q 002519 780 ------------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGN 845 (913)
Q Consensus 780 ------------g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d--~I~iwdi~s~~~~~~i~~~~~~~~ 845 (913)
....+............ ..........+.++..++.....+ .|.++|+..+.. +.+ .. ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~l---t~-~~ 233 (281)
T d1k32a2 160 ELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL-RKH---TS-FT 233 (281)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSC-EEC---CC-CC
T ss_pred CCCEEEEECCCCCCEEEEECCCCCEEECC-CCCCCCCEEEEECCCCCEECCCCCCCCEEEEECCCCCE-EEE---EC-CC
T ss_conf 66404442058862044411366122404-77666421331035320001134552128996899965-981---05-89
Q ss_pred CEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEC
Q ss_conf 5299999079998999984981999979999189982
Q 002519 846 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT 882 (913)
Q Consensus 846 ~i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~~~~ 882 (913)
......|+|+|+.|+.. .++.|+++|+.+++...+.
T Consensus 234 ~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~ 269 (281)
T d1k32a2 234 DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIE 269 (281)
T ss_dssp SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECC
T ss_pred CCCCCCCCCCCCEEEEE-ECCEEEEEECCCCCEEEEC
T ss_conf 86443286798999998-5999999989999878842
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.59 E-value=3.8e-05 Score=52.80 Aligned_cols=189 Identities=11% Similarity=0.053 Sum_probs=109.7
Q ss_pred ECCCCCEEEEEEECCCCEEEEEECC----CCEEEEECCCCCEEEEECC--CCCCEEEEEECCCCCEEEEEECC----CEE
Q ss_conf 2499987999990699999999689----9099997899812368524--79876899998999989999589----909
Q 002519 630 RASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFD----KTV 699 (913)
Q Consensus 630 ~~H~~~V~~i~fspdg~~Lasgs~D----g~V~iwd~~t~~~~~~l~~--h~~~I~~i~fspdg~~Lasgs~D----g~I 699 (913)
.........++|++||+++++...+ +.|...+............ .......+.+.++|++.++.... ..-
T Consensus 78 ~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g 157 (319)
T d2dg1a1 78 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 157 (319)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred ECCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCC
T ss_conf 48998703899999999999956897311049987389963644426777555875226773065320013540025742
Q ss_pred EEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCE-EEEEE--------E--CCCEEEEEEC
Q ss_conf 99986899952488415788737999838999099998379929999857990-56785--------1--7810799903
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVF--------K--GGTAQMRFQP 768 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~-~~~~~--------~--~~~~~i~~sp 768 (913)
.+|.+...+..+..+...-...+.|+|+++++.++++-...+.|+.|++.... ..... . .....+++..
T Consensus 158 ~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~ 237 (319)
T d2dg1a1 158 GVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS 237 (319)
T ss_dssp EEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT
T ss_pred EEEEEECCCCEEEEEEECCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECC
T ss_conf 15788416633578861233010001012221278740468914799976998362024633331257764103641738
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEEECC------CCCCEEEEEECCCCCEEEEEE
Q ss_conf 999799998599199997899708999507------998858999929999999994
Q 002519 769 HLGRYLAAAAENVVSILDAETQACRLSLQG------HTKPIDSVCWDPSGELLASVS 819 (913)
Q Consensus 769 ~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~------h~~~V~si~~spdg~~l~s~s 819 (913)
+++.+++....+.|.+||. .++.+..+.. +...+++++|.++...+++..
T Consensus 238 ~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 238 DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred CCCEEEEECCCCEEEEECC-CCCEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEC
T ss_conf 9999999848998999979-9959889968875778675046677807998899985
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.06 E-value=0.00047 Score=43.74 Aligned_cols=197 Identities=8% Similarity=0.062 Sum_probs=104.4
Q ss_pred EEEECCCCCEEEEEEECCCCEEEEEEC-C-----CCEEEEECCCCCEEEEEC------CCCCCEEEEEECCCCCEEEEEE
Q ss_conf 685249998799999069999999968-9-----909999789981236852------4798768999989999899995
Q 002519 627 NSVRASTSKVICCHFSSDGKLLATGGH-D-----KKAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSS 694 (913)
Q Consensus 627 ~~l~~H~~~V~~i~fspdg~~Lasgs~-D-----g~V~iwd~~t~~~~~~l~------~h~~~I~~i~fspdg~~Lasgs 694 (913)
..+..+.+.+...+|||||+.||.... + ..|.+++...++...... ........+.|+|+++.|+...
T Consensus 34 ~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 34 RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred EEEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 99766998526779878999899998628987722899998259952886416887547644434310279887799997
Q ss_pred CC------CEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCC-----------CEEEEECCCCEEEEEE
Q ss_conf 89------909999868999524884157887379998389990999983799-----------2999985799056785
Q 002519 695 FD------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----------EIRYWSINNGSCTRVF 757 (913)
Q Consensus 695 ~D------g~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg-----------~I~iwdi~~~~~~~~~ 757 (913)
.. ..+.+.+... ...... +......+ |.+++..+++....+. ....+...........
T Consensus 114 ~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (281)
T d1k32a2 114 AMQPFSSMTCLYRVENDG--INFVPL--NLGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV 188 (281)
T ss_dssp TTSSSTTCCEEEEEEGGG--TEEEEC--CSCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE
T ss_pred CCCCCCCCEEEEEECCCC--CEEEEE--CCCCCCEE-EECCCCEEEEEECCCCCEEEEECCCCCCEEEEECCCCCEEECC
T ss_conf 137876520246515877--606880--17865234-6469984988620466404442058862044411366122404
Q ss_pred ECC--CEEEEEECCCCEEEEEEC---CCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCC
Q ss_conf 178--107999039997999985---991999978997089995079988589999299999999949929999888899
Q 002519 758 KGG--TAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS 832 (913)
Q Consensus 758 ~~~--~~~i~~sp~~~~ll~~~~---dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d~I~iwdi~s~~ 832 (913)
... .....+.. ..++.... ...|+++|+.+.+......... .....|+|+|+.|+......|+++|+.++.
T Consensus 189 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~--~~~~~~SpDG~~I~f~~~~~l~~~d~~~g~ 264 (281)
T d1k32a2 189 DMSTHVSSPVIVG--HRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD--YYPRHLNTDGRRILFSKGGSIYIFNPDTEK 264 (281)
T ss_dssp CCSSCCEEEEEET--TEEEEEECTTSSCEEEEEETTSCSCEECCCCCS--SCEEEEEESSSCEEEEETTEEEEECTTTCC
T ss_pred CCCCCCCEEEEEC--CCCCEECCCCCCCCEEEEECCCCCEEEEECCCC--CCCCCCCCCCCEEEEEECCEEEEEECCCCC
T ss_conf 7766642133103--532000113455212899689996598105898--644328679899999859999999899998
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.95 E-value=0.00073 Score=42.15 Aligned_cols=217 Identities=13% Similarity=0.107 Sum_probs=93.9
Q ss_pred EEEEECC-CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECC
Q ss_conf 9999069-999999968990999978998123685247987689999899998999958990999986899952488415
Q 002519 638 CCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 716 (913)
Q Consensus 638 ~i~fspd-g~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~~~~~ 716 (913)
+..|++. +.++.+--..+.|..||.++++.. .+. ....+.++.+.+++.++++ +.+ .|.++|..++. .......
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~-~~~l~~~ 96 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGV-LTLHAEL 96 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCC-EEEEECS
T ss_pred CCEEECCCCEEEEEECCCCEEEEEECCCCEEE-EEE-CCCCCEEEEEECCCCEEEE-EEC-CCEEEECCCCE-EEEEEEE
T ss_conf 87598999999999878999999989989599-998-9998179899659988999-737-63895046451-3578664
Q ss_pred ----CCCCEEEEEECCCCCEEEEEEEC---CCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEEEEEC-CCEEEEEE
Q ss_conf ----78873799983899909999837---99299998579905678517--8107999039997999985-99199997
Q 002519 717 ----HSASVMSLDFHPNKDDLICSCDG---DGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILD 786 (913)
Q Consensus 717 ----h~~~I~si~fspd~~~ll~sgs~---Dg~I~iwdi~~~~~~~~~~~--~~~~i~~sp~~~~ll~~~~-dg~I~i~D 786 (913)
....++.+.+.++|..++.+... .+.-.+|.+..++....+.. ....+.|++++..++.+.. .+.|..|+
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~ 176 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVP 176 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred ECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf 04787661013579799999887426431333305766229968998650687640246587766898515663246764
Q ss_pred CCCC--------EEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEE-CCC
Q ss_conf 8997--------0899950799885899992999999999499-29999888899871378840399952999990-799
Q 002519 787 AETQ--------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH-PTY 856 (913)
Q Consensus 787 ~~t~--------~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~s-p~g 856 (913)
.... .....+.+.......++++.+|++.++.... .|..||.. + +.+..+......+++|+|- ++.
T Consensus 177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G---~~~~~i~lP~~~~T~~~FGG~d~ 252 (295)
T d2ghsa1 177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G---NHIARYEVPGKQTTCPAFIGPDA 252 (295)
T ss_dssp BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C---CEEEEEECSCSBEEEEEEESTTS
T ss_pred ECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECCC-C---CEEEEECCCCCCEEEEEEECCCC
T ss_conf 5355553245357884167555666326786999989532078846885699-9---28668638998527989828999
Q ss_pred CEEEEEE
Q ss_conf 9899998
Q 002519 857 PSLLVIG 863 (913)
Q Consensus 857 ~~li~~s 863 (913)
+.|++.+
T Consensus 253 ~~LyvTt 259 (295)
T d2ghsa1 253 SRLLVTS 259 (295)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
T ss_conf 9999997
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.86 E-value=0.001 Score=40.96 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=36.7
Q ss_pred EEEEEEECCCCEEEEEECC-CCEEEEECCCCCEEEEECC-CCCCEEEEEECCCCCEEEEEECC------CEEEEEECCC
Q ss_conf 7999990699999999689-9099997899812368524-79876899998999989999589------9099998689
Q 002519 636 VICCHFSSDGKLLATGGHD-KKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFD------KTVRVWDADN 706 (913)
Q Consensus 636 V~~i~fspdg~~Lasgs~D-g~V~iwd~~t~~~~~~l~~-h~~~I~~i~fspdg~~Lasgs~D------g~I~Iwdl~~ 706 (913)
....++.++|++++.|+.+ ..+.+||..+..-...-.. ....-.+.+..+|+++++.++.+ ..+.+||..+
T Consensus 78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred EEEEEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCC
T ss_conf 5689994688689863688862167567557442156566421013035531782665213663335432056634888
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.74 E-value=0.0015 Score=39.53 Aligned_cols=181 Identities=16% Similarity=0.053 Sum_probs=112.4
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECC----CCCCEEEEEECCCCCEEEEEEC----CCEEEEEEC
Q ss_conf 99879999906999999996899099997899812368524----7987689999899998999958----990999986
Q 002519 633 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE----HSSLITDVRFSPSMPRLATSSF----DKTVRVWDA 704 (913)
Q Consensus 633 ~~~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~----h~~~I~~i~fspdg~~Lasgs~----Dg~I~Iwdl 704 (913)
...+.++++.++|.++++ +.+ .|.++|..+++....... ....++++.+.++|++.++... .+.-.+|.+
T Consensus 58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~ 135 (295)
T d2ghsa1 58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV 135 (295)
T ss_dssp SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred CCCCEEEEEECCCCEEEE-EEC-CCEEEECCCCEEEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEE
T ss_conf 998179899659988999-737-638950464513578664047876610135797999998874264313333057662
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEE-----EEE---E---ECCCEEEEEECCCCEE
Q ss_conf 8999524884157887379998389990999983799299998579905-----678---5---1781079990399979
Q 002519 705 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-----TRV---F---KGGTAQMRFQPHLGRY 773 (913)
Q Consensus 705 ~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~-----~~~---~---~~~~~~i~~sp~~~~l 773 (913)
.. +....... .-.....+.|+++++.++++.+..+.|..|++..... ... + .+....+++..+++.+
T Consensus 136 ~~-g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlW 213 (295)
T d2ghsa1 136 AK-GKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW 213 (295)
T ss_dssp ET-TEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred CC-CCEEEEEE-CCCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEE
T ss_conf 29-96899865-06876402465877668985156632467645355553245357884167555666326786999989
Q ss_pred EEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEC-CCCCEEEEE
Q ss_conf 999859919999789970899950799885899992-999999999
Q 002519 774 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD-PSGELLASV 818 (913)
Q Consensus 774 l~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~s-pdg~~l~s~ 818 (913)
++....+.|..||. .++.+..+......+++++|- ++.+.|++.
T Consensus 214 va~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 214 NARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp EEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred EEEECCCCEEEECC-CCCEEEEECCCCCCEEEEEEECCCCCEEEEE
T ss_conf 53207884688569-9928668638998527989828999999999
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.60 E-value=0.0023 Score=38.02 Aligned_cols=230 Identities=13% Similarity=0.046 Sum_probs=110.4
Q ss_pred EEEEEC---CCCEEEEEE-CCCCEEEEECCCCCEEEEECC-CCCCEEEEEECC--CCCEEEEEECCC-------------
Q ss_conf 999906---999999996-899099997899812368524-798768999989--999899995899-------------
Q 002519 638 CCHFSS---DGKLLATGG-HDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSP--SMPRLATSSFDK------------- 697 (913)
Q Consensus 638 ~i~fsp---dg~~Lasgs-~Dg~V~iwd~~t~~~~~~l~~-h~~~I~~i~fsp--dg~~Lasgs~Dg------------- 697 (913)
.+.+.. ||++|++.. .+..|.+.|+++.++...+.. ....+..++..+ +..|++..+.+.
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCH
T ss_conf 51444885551289997589863899988540566799667887775012025797479973676544459998513240
Q ss_pred -----EEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEC-CCCEEEEECCCCEEEEEEECCC-EEEEEECCC
Q ss_conf -----099998689995248841578873799983899909999837-9929999857990567851781-079990399
Q 002519 698 -----TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGT-AQMRFQPHL 770 (913)
Q Consensus 698 -----~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~-Dg~I~iwdi~~~~~~~~~~~~~-~~i~~sp~~ 770 (913)
.+.++|.++ .+...... .......+.++++|+.+++++.. +..+.+.++.........-... ....+.+++
T Consensus 169 ~~y~~~~t~ID~~t-m~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G 246 (459)
T d1fwxa2 169 ANYVNVFTAVDADK-WEVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 246 (459)
T ss_dssp G-EEEEEEEEETTT-TEEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred HHCCEEEEEEECCC-CEEEEEEE-ECCCHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCEEEEEECHHHHHHHHHCC
T ss_conf 11226899996677-66989964-08972015318999989997135568853222252454189996348868764059
Q ss_pred CEEEEEECCCEEEEEECCCC---EEEEEECCCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCC--------CCCCEE
Q ss_conf 97999985991999978997---0899950799885899992999999999499--2999988889--------987137
Q 002519 771 GRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG--------SEGECV 837 (913)
Q Consensus 771 ~~ll~~~~dg~I~i~D~~t~---~~~~~l~~h~~~V~si~~spdg~~l~s~s~d--~I~iwdi~s~--------~~~~~i 837 (913)
+.-. -+.+.+.|.+.. ..+..+.. ......+.++|||+++++++.- ++.|+|+++. ....++
T Consensus 247 k~~e----ingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~ 321 (459)
T d1fwxa2 247 DYQE----LNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 321 (459)
T ss_dssp CSEE----ETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGE
T ss_pred CCEE----ECCCEEECCCCCCCCCEEEEEEC-CCCCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCE
T ss_conf 9379----69946615423678520389865-898773388999978999388589579998225356650468845217
Q ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 8840399952999990799989999849819999799
Q 002519 838 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 874 (913)
Q Consensus 838 ~~~~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~~ 874 (913)
......+-.-....|...|....+.--|..|.-|++.
T Consensus 322 ~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 322 VAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp EECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred EEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECC
T ss_conf 9611357676620338984299986123169997344
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.39 E-value=0.004 Score=36.05 Aligned_cols=49 Identities=10% Similarity=-0.065 Sum_probs=32.6
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEE--EEEEECCCC-EEEEE
Q ss_conf 99989999849819999799991899826689768--999927999-99999
Q 002519 855 TYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIA--ALAVSTETG-YVASA 903 (913)
Q Consensus 855 ~g~~li~~s~dg~I~iwd~~~~~~~~~~~h~~~V~--~l~~spdg~-~Lasg 903 (913)
.+..+++++.|+.++.+|.++++.+........+. -+.|..||+ ||++.
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~ 525 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCEEEEEEE
T ss_conf 6997999778996999999998687899899996515648988999999999
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.12 E-value=0.0071 Score=33.93 Aligned_cols=204 Identities=10% Similarity=-0.028 Sum_probs=92.1
Q ss_pred CCCCEEEEEEECCCCEEEEEE-CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCCC
Q ss_conf 999879999906999999996-89909999789981236852479876899998999989999-5899099998689995
Q 002519 632 STSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGY 709 (913)
Q Consensus 632 H~~~V~~i~fspdg~~Lasgs-~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasg-s~Dg~I~Iwdl~~~~~ 709 (913)
+...+.+++|......|+... .++.|+..+++.......+......+.++++..-+..|+.+ ...+.|.+.+++...
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~- 112 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ- 112 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred CCCCEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCE-
T ss_conf 8775799999858999999989999199997665872898870126420799963688688842678979988058816-
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 24884157887379998389990999983799299998579905678517810799903999799998599199997899
Q 002519 710 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET 789 (913)
Q Consensus 710 ~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t 789 (913)
....+.........+++.|....++.+-...+..+|+. .++..
T Consensus 113 ~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r-------------------------------------~~~dG 155 (263)
T d1npea_ 113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET-------------------------------------SHMDG 155 (263)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE-------------------------------------EETTS
T ss_pred EEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCEEEE-------------------------------------ECCCC
T ss_conf 77771256668727999256692799534899768999-------------------------------------66789
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEE-CCC
Q ss_conf 70899950799885899992999999999499--299998888998713788403999529999907999899998-498
Q 002519 790 QACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQ 866 (913)
Q Consensus 790 ~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d--~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~li~~s-~dg 866 (913)
..........-.....+++++.+..|+.+... .|...++... .....+.... ....+++. +..|+... ..+
T Consensus 156 ~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~---~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~ 229 (263)
T d1npea_ 156 TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTN 229 (263)
T ss_dssp CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEECCC-SEEEEEEE--TTEEEEEETTTT
T ss_pred CCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCC---CEEEEECCCC-CCEEEEEE--CCEEEEEECCCC
T ss_conf 97236553035555307995047589999289999999999999---7699988999-86899999--999999999999
Q ss_pred EEEEEECCCCCEE
Q ss_conf 1999979999189
Q 002519 867 SLELWNMSENKTM 879 (913)
Q Consensus 867 ~I~iwd~~~~~~~ 879 (913)
.|...|..+++..
T Consensus 230 ~I~~~~~~~g~~~ 242 (263)
T d1npea_ 230 SVIAMDLAISKEM 242 (263)
T ss_dssp EEEEEETTTTEEE
T ss_pred EEEEEECCCCCCC
T ss_conf 7999989899510
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.55 E-value=0.018 Score=30.60 Aligned_cols=79 Identities=6% Similarity=0.110 Sum_probs=42.1
Q ss_pred EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEE--EEEEECCCC-
Q ss_conf 29999888899871378840399952999990799989999849819999799991899826689768--999927999-
Q 002519 822 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIA--ALAVSTETG- 898 (913)
Q Consensus 822 ~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~~~~~h~~~V~--~l~~spdg~- 898 (913)
.+.-||+.++ +.+...... .....-.+.-.+..+++++.|+.++.||..+++++........+. -+.+..+|+
T Consensus 439 ~l~A~D~~tG---k~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq 514 (560)
T d1kv9a2 439 ALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ 514 (560)
T ss_dssp EEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CEEEEECCCC---EEEEECCCC-CCCCCCEEEECCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf 4688707788---373102578-888774059879989997789819999999985827998999955167799989999
Q ss_pred EEEEEE
Q ss_conf 999996
Q 002519 899 YVASAS 904 (913)
Q Consensus 899 ~Lasgs 904 (913)
||+...
T Consensus 515 yv~v~a 520 (560)
T d1kv9a2 515 YVAIMA 520 (560)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999991
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.47 E-value=0.02 Score=30.20 Aligned_cols=50 Identities=8% Similarity=-0.092 Sum_probs=31.0
Q ss_pred ECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCE--EEEEEECCCC-EEEE
Q ss_conf 079998999984981999979999189982668976--8999927999-9999
Q 002519 853 HPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLI--AALAVSTETG-YVAS 902 (913)
Q Consensus 853 sp~g~~li~~s~dg~I~iwd~~~~~~~~~~~h~~~V--~~l~~spdg~-~Las 902 (913)
+..+..+++++.|+.++.||..+++++........+ .-+.|..+|+ ||+.
T Consensus 481 sTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav 533 (596)
T d1w6sa_ 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI 533 (596)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEEEE
T ss_conf 86699799978999599999999848369989999540776899899999999
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.25 E-value=0.026 Score=29.31 Aligned_cols=161 Identities=9% Similarity=-0.013 Sum_probs=75.1
Q ss_pred CCCEEEEEEECCCCEEEE-EECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC-CEEEEE--ECCCCC
Q ss_conf 998799999069999999-9689909999789981236852479876899998999989999589-909999--868999
Q 002519 633 TSKVICCHFSSDGKLLAT-GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-KTVRVW--DADNPG 708 (913)
Q Consensus 633 ~~~V~~i~fspdg~~Las-gs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~D-g~I~Iw--dl~~~~ 708 (913)
...+.++++..-+..|+. -...+.|.+.+++.......+.........+++.|...+|+..... +..+|| +++...
T Consensus 78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~ 157 (263)
T d1npea_ 78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157 (263)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred CCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCCCC
T ss_conf 26420799963688688842678979988058816777712566687279992566927995348997689996678997
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEEC-CCEEEEEEC
Q ss_conf 5248841578873799983899909999837992999985799056785178107999039997999985-991999978
Q 002519 709 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-ENVVSILDA 787 (913)
Q Consensus 709 ~~~~~~~~h~~~I~si~fspd~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ll~~~~-dg~I~i~D~ 787 (913)
........-....+|++.+.++.++++-...+.|...++........+.+......+..+++.++.+.. .+.|...|.
T Consensus 158 -~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~ 236 (263)
T d1npea_ 158 -RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDL 236 (263)
T ss_dssp -CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred -CEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCEEEEEECCCCEEEEEEC
T ss_conf -2365530355553079950475899992899999999999997699988999868999999999999999997999989
Q ss_pred CCCEEEE
Q ss_conf 9970899
Q 002519 788 ETQACRL 794 (913)
Q Consensus 788 ~t~~~~~ 794 (913)
.+++...
T Consensus 237 ~~g~~~~ 243 (263)
T d1npea_ 237 AISKEMD 243 (263)
T ss_dssp TTTEEEE
T ss_pred CCCCCCE
T ss_conf 8995106
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.06 E-value=0.031 Score=28.59 Aligned_cols=231 Identities=11% Similarity=0.066 Sum_probs=114.6
Q ss_pred CCCEEEEEEEC--CCCEEEEEECC------------------CCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 99879999906--99999999689------------------90999978998123685247987689999899998999
Q 002519 633 TSKVICCHFSS--DGKLLATGGHD------------------KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 692 (913)
Q Consensus 633 ~~~V~~i~fsp--dg~~Lasgs~D------------------g~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Las 692 (913)
...+..++..+ +..+++..+.+ +.+.++|.++.+....+... .....+.++++|+++++
T Consensus 131 ~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~ 209 (459)
T d1fwxa2 131 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFS 209 (459)
T ss_dssp CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEE
T ss_pred CCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCEEEEEEECCCCEEEEEEEEC-CCHHCCCCCCCCCEEEE
T ss_conf 87775012025797479973676544459998513240112268999966776698996408-97201531899998999
Q ss_pred EECCCE--EEEEECCCCCCEEEEECCCCCCEEEEE------ECCCCCEEEEEEECCCCEEEEECCCC---EEEEEE--EC
Q ss_conf 958990--999986899952488415788737999------83899909999837992999985799---056785--17
Q 002519 693 SSFDKT--VRVWDADNPGYSLRTFMGHSASVMSLD------FHPNKDDLICSCDGDGEIRYWSINNG---SCTRVF--KG 759 (913)
Q Consensus 693 gs~Dg~--I~Iwdl~~~~~~~~~~~~h~~~I~si~------fspd~~~ll~sgs~Dg~I~iwdi~~~---~~~~~~--~~ 759 (913)
.|.+.. +.+.++.. .. ...+.... +.++++...+ +.+.+.|.+.. ..++.+ ..
T Consensus 210 TsyNSE~g~~l~e~ta-~e--------~D~i~V~n~~rie~av~~Gk~~ei-----ngV~VVD~~~~~~~~v~~yIPVpK 275 (459)
T d1fwxa2 210 TSYNSEKGMTLPEMTA-AE--------MDHIVVFNIAEIEKAIAAGDYQEL-----NGVKVVDGRKEASSLFTRYIPIAN 275 (459)
T ss_dssp EESCTTCCSSHHHHTC-CS--------EEEEEEEEHHHHHHHHHHTCSEEE-----TTEEEEECSGG--CSSEEEEEEES
T ss_pred EECCCCCCCCHHHCCC-CC--------CEEEEEECHHHHHHHHHCCCCEEE-----CCCEEECCCCCCCCCEEEEEECCC
T ss_conf 7135568853222252-45--------418999634886876405993796-----994661542367852038986589
Q ss_pred CCEEEEEECCCCEEEEEEC-CCEEEEEECCCCE-----------EEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEE
Q ss_conf 8107999039997999985-9919999789970-----------899950799885899992999999999499-29999
Q 002519 760 GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQA-----------CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 826 (913)
Q Consensus 760 ~~~~i~~sp~~~~ll~~~~-dg~I~i~D~~t~~-----------~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iw 826 (913)
....+.++|++.++++++. +.++.++|+++.. ++..-....-.-...+|+..|....+.--| .|.-|
T Consensus 276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw 355 (459)
T d1fwxa2 276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKW 355 (459)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred CCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEE
T ss_conf 87733889999789993885895799982253566504688452179611357676620338984299986123169997
Q ss_pred ECCCC-------CCCCEEEEEECCCCCEEEEE-----EECCCCEEEEEEC---CC----------EEEEEECCCCCE
Q ss_conf 88889-------98713788403999529999-----9079998999984---98----------199997999918
Q 002519 827 TVGSG-------SEGECVHELSCNGNKFHSCV-----FHPTYPSLLVIGC---YQ----------SLELWNMSENKT 878 (913)
Q Consensus 827 di~s~-------~~~~~i~~~~~~~~~i~~i~-----~sp~g~~li~~s~---dg----------~I~iwd~~~~~~ 878 (913)
++... .....+..+..|...-+.+. ..|+|+++++... |+ .-.++|+...+.
T Consensus 356 ~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pe~~qlidisg~~m 432 (459)
T d1fwxa2 356 NIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 432 (459)
T ss_dssp EHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred ECCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCEE
T ss_conf 34405566446667731135433457887745767867888878998034343446678889876553797479815
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.05 E-value=0.031 Score=28.56 Aligned_cols=59 Identities=10% Similarity=0.094 Sum_probs=27.9
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEEC
Q ss_conf 919999789970899950799885899992999999999499-299998888998713788403
Q 002519 780 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 842 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~ 842 (913)
+.|..+|..+++.+............. ..-.+.++++++.| .++.+|.+++ +.+.++..
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~-l~TagglVf~G~~dg~l~A~Da~tG---e~lW~~~l 503 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGT-LYTKGGLVWYATLDGYLKALDNKDG---KELWNFKM 503 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBC-EEETTTEEEEECTTSEEEEEETTTC---CEEEEEEC
T ss_pred CCEEEECCCCCCEEEECCCCCCCCCCE-EEECCCEEEEECCCCEEEEEECCCC---CEEEEEEC
T ss_conf 617885367784642767899987560-5966997999778996999999998---68789989
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.032 Score=28.47 Aligned_cols=218 Identities=8% Similarity=-0.046 Sum_probs=92.7
Q ss_pred CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCC---CEEEEECCCCCCEEEEEECCCCC
Q ss_conf 099997899812368524798768999989999899995-89909999868999---52488415788737999838999
Q 002519 656 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPG---YSLRTFMGHSASVMSLDFHPNKD 731 (913)
Q Consensus 656 ~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs-~Dg~I~Iwdl~~~~---~~~~~~~~h~~~I~si~fspd~~ 731 (913)
.|+..++++......+. ....+.+++|.+..+.|+-.. .++.|+..+++... ............+.++++.+.++
T Consensus 11 ~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~ 89 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (266)
T ss_dssp SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred EEEEEECCCCCCEEEEC-CCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCC
T ss_conf 18999899985266417-99855999998089999999997997999993578887614899848999854689864265
Q ss_pred EEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEEC--CCEEEEEECCCCEEEEEECCCCCCEEEE
Q ss_conf 0999983799299998579905678517---8107999039997999985--9919999789970899950799885899
Q 002519 732 DLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSV 806 (913)
Q Consensus 732 ~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~~~--dg~I~i~D~~t~~~~~~l~~h~~~V~si 806 (913)
.++++....+.|.+.++....+...... ....+.+.+..+.++.+.. .+.|...+.............-.....+
T Consensus 90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl 169 (266)
T d1ijqa1 90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 169 (266)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCCCEECCCCCCCCEEEEE
T ss_conf 28999548999985764895378887279988336999800394887126997302686368883441200453201699
Q ss_pred EECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCCC
Q ss_conf 992999999999499--299998888998713788403999529999907999899998-49819999799991
Q 002519 807 CWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENK 877 (913)
Q Consensus 807 ~~spdg~~l~s~s~d--~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~li~~s-~dg~I~iwd~~~~~ 877 (913)
++++.++.|+.+... .|...++..... ..+............+++. +..|+.+. .++.|+..+..++.
T Consensus 170 ~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 170 TLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEECCCCEEEEECCCCCEEEEEECCCCCE-EEEEECCCCCCCCEEEEEE--CCEEEEEECCCCEEEEEECCCCC
T ss_conf 86133569999528967999998999977-9999389855664799998--99999998999969999998996
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.91 E-value=0.036 Score=28.09 Aligned_cols=239 Identities=8% Similarity=0.038 Sum_probs=127.6
Q ss_pred EEEEEEECCCCEEEEEEC-----CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC--------------
Q ss_conf 799999069999999968-----9909999789981236852479876899998999989999589--------------
Q 002519 636 VICCHFSSDGKLLATGGH-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-------------- 696 (913)
Q Consensus 636 V~~i~fspdg~~Lasgs~-----Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~D-------------- 696 (913)
+..+++|||++++|.+-. ...|+++|+.+++.+...-. ......+.|.+|+..|+....|
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~ 205 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred ECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCCC-CCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 3425853789879999556667210467741676403144222-432364178579989999976266676544333457
Q ss_pred --CEEEEEECCCCCCE-EEEECCC--CCCEEEEEECCCCCEEEEEEEC--CCC--EEEEECCCCE--------EEEEEEC
Q ss_conf --90999986899952-4884157--8873799983899909999837--992--9999857990--------5678517
Q 002519 697 --KTVRVWDADNPGYS-LRTFMGH--SASVMSLDFHPNKDDLICSCDG--DGE--IRYWSINNGS--------CTRVFKG 759 (913)
Q Consensus 697 --g~I~Iwdl~~~~~~-~~~~~~h--~~~I~si~fspd~~~ll~sgs~--Dg~--I~iwdi~~~~--------~~~~~~~ 759 (913)
..|..|.+.++... ...+... ...+..+..+.+++.+++.... +.. +.+.++.... ....+..
T Consensus 206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 285 (430)
T d1qfma1 206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN 285 (430)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEECC
T ss_conf 86338999889886531002232357725775302687624568764367764799995177764556631012583046
Q ss_pred CCEEEE-EECCCCEEEEEEC----CCEEEEEECCCCE---EEEEECCCCCCEEEEEECCCCCEEE-EEECC---EEEEEE
Q ss_conf 810799-9039997999985----9919999789970---8999507998858999929999999-99499---299998
Q 002519 760 GTAQMR-FQPHLGRYLAAAA----ENVVSILDAETQA---CRLSLQGHTKPIDSVCWDPSGELLA-SVSED---SVRVWT 827 (913)
Q Consensus 760 ~~~~i~-~sp~~~~ll~~~~----dg~I~i~D~~t~~---~~~~l~~h~~~V~si~~spdg~~l~-s~s~d---~I~iwd 827 (913)
...... +...+..++..+. ++.|...++.... ....+..+...+..-.+...+.+|+ ....+ .|++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~ 365 (430)
T d1qfma1 286 FEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHD 365 (430)
T ss_dssp SSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEECCCCEEECCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEEECCEEEEEEECCCEEEEEEEE
T ss_conf 55626877137730232457656554158734778765541589513675255567897799999999918870899998
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECC----CEEEEEECCCCCE
Q ss_conf 88899871378840399952999990799989999849----8199997999918
Q 002519 828 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKT 878 (913)
Q Consensus 828 i~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~li~~s~d----g~I~iwd~~~~~~ 878 (913)
+..+. ...........+..+...++...+.....+ .+++.||+.+++.
T Consensus 366 ~~~~~---~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 366 LATGA---LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp TTTCC---EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred CCCCC---EEEECCCCCCEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCCCCC
T ss_conf 99995---88854888716864148988998999981899987699999999985
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=95.47 E-value=0.05 Score=26.86 Aligned_cols=50 Identities=8% Similarity=0.004 Sum_probs=29.5
Q ss_pred ECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEE--EEEECCCC-EEEE
Q ss_conf 07999899998498199997999918998266897689--99927999-9999
Q 002519 853 HPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA--LAVSTETG-YVAS 902 (913)
Q Consensus 853 sp~g~~li~~s~dg~I~iwd~~~~~~~~~~~h~~~V~~--l~~spdg~-~Las 902 (913)
...+..+++++.|+.++.||.++++.+........+.. +.|..+|+ ||+.
T Consensus 485 stagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v 537 (573)
T d1kb0a2 485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (573)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEEEE
T ss_conf 98699899977999199999998868579989899451677999899999999
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.30 E-value=0.056 Score=26.47 Aligned_cols=246 Identities=10% Similarity=0.159 Sum_probs=130.8
Q ss_pred CCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEE
Q ss_conf 90999978998123685247987689999899998999958990999986899952488415788737999838999099
Q 002519 655 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLI 734 (913)
Q Consensus 655 g~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll 734 (913)
..|.|.|+..........-. .-+...+|..+.|+.-+ ..++.|+|+++ +..++.+. ....|.--.|..+. .|
T Consensus 45 ~~VvIidl~n~~~~~Rrpi~---AdsAIMhP~~~IiALra-g~~LQiFnlet-K~klks~~-~~e~VvfWkWis~~--~L 116 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHT-MTDDVTFWKWISLN--TV 116 (327)
T ss_dssp EEEEEEETTSTTSCEEEECC---CSEEEECSSSSEEEEEE-TTEEEEEETTT-TEEEEEEE-CSSCCCEEEESSSS--EE
T ss_pred CEEEEEECCCCCCCEECCCC---HHHHHCCCCCCEEEEEC-CCEEEEEEHHH-HHHHCEEE-CCCCCEEEEECCCC--EE
T ss_conf 43999988998763314436---16653088875799962-88689984468-22111587-68885799944798--89
Q ss_pred EEEECCCCEEEEECCCC-EEEEEEECC-------CEEEEEECCCCEEEEEEC-------CCEEEEEECCCCEEEEEECCC
Q ss_conf 99837992999985799-056785178-------107999039997999985-------991999978997089995079
Q 002519 735 CSCDGDGEIRYWSINNG-SCTRVFKGG-------TAQMRFQPHLGRYLAAAA-------ENVVSILDAETQACRLSLQGH 799 (913)
Q Consensus 735 ~sgs~Dg~I~iwdi~~~-~~~~~~~~~-------~~~i~~sp~~~~ll~~~~-------dg~I~i~D~~t~~~~~~l~~h 799 (913)
+.. .+..|+-|+++.. ...+.|..+ +...+.+++.++++..+- .|.+-+|..+... -..+.+|
T Consensus 117 ~lV-T~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGh 194 (327)
T d1utca2 117 ALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGH 194 (327)
T ss_dssp EEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCS
T ss_pred EEE-CCCCEEEECCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEECCCC-CCCCCCE
T ss_conf 999-18816997356999852662321012486389989899998899995713788305888899802286-7523203
Q ss_pred CCCEEEEEECCCC---CEEEEEEC---C-EEEEEECCCCCCC-----CEEEEE-EC---CCCCEEEEEEECCCCEEEEEE
Q ss_conf 9885899992999---99999949---9-2999988889987-----137884-03---999529999907999899998
Q 002519 800 TKPIDSVCWDPSG---ELLASVSE---D-SVRVWTVGSGSEG-----ECVHEL-SC---NGNKFHSCVFHPTYPSLLVIG 863 (913)
Q Consensus 800 ~~~V~si~~spdg---~~l~s~s~---d-~I~iwdi~s~~~~-----~~i~~~-~~---~~~~i~~i~~sp~g~~li~~s 863 (913)
......+.+..+. .+++.+.. . .+.|.++...... +....+ -. ...-..++..++....+++.+
T Consensus 195 aa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviT 274 (327)
T d1utca2 195 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT 274 (327)
T ss_dssp EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEE
T ss_pred EEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEE
T ss_conf 46568887079988730999998789874799998688755788875326887779634688477999643379999996
Q ss_pred CCCEEEEEECCCCCEEE-ECCCCCCEEEEEEECCCCEEEEEECCCCEE
Q ss_conf 49819999799991899-826689768999927999999996798299
Q 002519 864 CYQSLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFVK 910 (913)
Q Consensus 864 ~dg~I~iwd~~~~~~~~-~~~h~~~V~~l~~spdg~~Lasgs~DG~I~ 910 (913)
..|.|++||+.++.++. -.-....|...+-+.+..-++....+|.|.
T Consensus 275 K~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 275 KYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEEEECCCCEEE
T ss_conf 675899997566628999404788448962678886089987897699
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.18 E-value=0.061 Score=26.19 Aligned_cols=202 Identities=10% Similarity=-0.010 Sum_probs=123.8
Q ss_pred CCCCEEEEEEECCCCEEEEEE-CCCCEEEEECCCC----CEEEEECCCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECC
Q ss_conf 999879999906999999996-8990999978998----1236852479876899998999989999-589909999868
Q 002519 632 STSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDAD 705 (913)
Q Consensus 632 H~~~V~~i~fspdg~~Lasgs-~Dg~V~iwd~~t~----~~~~~l~~h~~~I~~i~fspdg~~Lasg-s~Dg~I~Iwdl~ 705 (913)
....+.+++|+.....|+... .++.|...+++.. .....+......+.++++...+..|+.+ ...+.|.+.+++
T Consensus 28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~ 107 (266)
T d1ijqa1 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (266)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEECC
T ss_conf 99855999998089999999997997999993578887614899848999854689864265289995489999857648
Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEEEEEEE-CCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEEC-CC
Q ss_conf 999524884157887379998389990999983-799299998579905678517---8107999039997999985-99
Q 002519 706 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA-EN 780 (913)
Q Consensus 706 ~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs-~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~~~-dg 780 (913)
. ......+.........++++|....++++.. ..+.|...++........... ....+++.+..+.++.+.. .+
T Consensus 108 g-~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~ 186 (266)
T d1ijqa1 108 G-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 186 (266)
T ss_dssp S-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred C-CEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCCCEECCCCCCCCEEEEEEEECCCCEEEEECCCCC
T ss_conf 9-537888727998833699980039488712699730268636888344120045320169986133569999528967
Q ss_pred EEEEEECCCCEEEEEECC--CCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCC
Q ss_conf 199997899708999507--99885899992999999999499-29999888899871
Q 002519 781 VVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 835 (913)
Q Consensus 781 ~I~i~D~~t~~~~~~l~~--h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~ 835 (913)
.|...++........+.. ......++++. ++.++++-..+ .|...+..++....
T Consensus 187 ~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~ 243 (266)
T d1ijqa1 187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN 243 (266)
T ss_dssp EEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred EEEEEECCCCCEEEEEECCCCCCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEE
T ss_conf 9999989999779999389855664799998-99999998999969999998996159
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=94.39 E-value=0.092 Score=24.70 Aligned_cols=270 Identities=10% Similarity=0.056 Sum_probs=141.0
Q ss_pred CEEEEEEECCCCEEEEEECCC-----------CEEEEECCCCCEEE--EE-CCCCCCEEEEEECCCCCEEEEEECC-CEE
Q ss_conf 879999906999999996899-----------09999789981236--85-2479876899998999989999589-909
Q 002519 635 KVICCHFSSDGKLLATGGHDK-----------KAVLWHTDTLKSKT--NL-EEHSSLITDVRFSPSMPRLATSSFD-KTV 699 (913)
Q Consensus 635 ~V~~i~fspdg~~Lasgs~Dg-----------~V~iwd~~t~~~~~--~l-~~h~~~I~~i~fspdg~~Lasgs~D-g~I 699 (913)
.+.......+|++++.|+.+. .+.+||..+..-.. .. ..+........+.+++.+++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred CCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCE
T ss_conf 01789992599999998405766678877606899998888968666778987445256899946886898636888621
Q ss_pred EEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECC------CCEEEEECCCCEEEEEEEC--------------
Q ss_conf 99986899952488415788737999838999099998379------9299998579905678517--------------
Q 002519 700 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFKG-------------- 759 (913)
Q Consensus 700 ~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sgs~D------g~I~iwdi~~~~~~~~~~~-------------- 759 (913)
.+||..+..............-.+.+..+++.. ++.++.+ ..+.+||..+.+....-..
T Consensus 101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v-~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 179 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRV-FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 179 (387)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCE-EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEEECCCCE-EEECCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCEE
T ss_conf 675675574421565664210130355317826-6521366333543205663488895511588764431134665136
Q ss_pred ---CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEC--C----CC--CCEEEEEE-CCCCCEEEEEECC------
Q ss_conf ---81079990399979999859919999789970899950--7----99--88589999-2999999999499------
Q 002519 760 ---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--G----HT--KPIDSVCW-DPSGELLASVSED------ 821 (913)
Q Consensus 760 ---~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--~----h~--~~V~si~~-spdg~~l~s~s~d------ 821 (913)
....+...+++..++.+...+.+.+++..+........ . +. ..-.++.+ ..++++++.++..
T Consensus 180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~ 259 (387)
T d1k3ia3 180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 259 (387)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred ECCCEEEEEEECCCCEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 50422699970798778746867747814866671731665566766576322263788613588247887536788775
Q ss_pred ---EEEEEECCCCCCCCEEEE-EE--CCCCCEEEEEEECCCCEEEEEECCC-----------EEEEEECCCCCEEEECCC
Q ss_conf ---299998888998713788-40--3999529999907999899998498-----------199997999918998266
Q 002519 822 ---SVRVWTVGSGSEGECVHE-LS--CNGNKFHSCVFHPTYPSLLVIGCYQ-----------SLELWNMSENKTMTLTAH 884 (913)
Q Consensus 822 ---~I~iwdi~s~~~~~~i~~-~~--~~~~~i~~i~~sp~g~~li~~s~dg-----------~I~iwd~~~~~~~~~~~h 884 (913)
...++++........... .. .......+.+..++++.+++++.+. .+.+||..+.+-..+...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~ 339 (387)
T d1k3ia3 260 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 339 (387)
T ss_dssp CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred CCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCEECEEEEEECCCCEEEECCCC
T ss_conf 21000001111135678840603665665434335660587499988845676688994701079897999918878899
Q ss_pred C--CC-EEEEEEECCCCEEEEEEC
Q ss_conf 8--97-689999279999999967
Q 002519 885 E--GL-IAALAVSTETGYVASASH 905 (913)
Q Consensus 885 ~--~~-V~~l~~spdg~~Lasgs~ 905 (913)
. .. -....+.+|+++++.|+.
T Consensus 340 ~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 340 SIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCCEEEEEECCCCEEEEEECC
T ss_conf 975531279999889999999698
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=93.83 E-value=0.12 Score=23.88 Aligned_cols=81 Identities=9% Similarity=0.126 Sum_probs=46.1
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCC-EEEEEEECCCC
Q ss_conf 919999789970899950799885899992999999999499-2999988889987137884039995-29999907999
Q 002519 780 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK-FHSCVFHPTYP 857 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~-i~~i~~sp~g~ 857 (913)
+.|.-+|..+++.+..+... .+..+-...-.+.++++++.| .++.||.+++ +.+.++...... -.-+.|..+|+
T Consensus 438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tG---e~LW~~~l~~~~~~~P~ty~~dGk 513 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKG---EALWQFEAQSGIVAAPMTFELAGR 513 (560)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCEEEEECCCCEEEEECCCC-CCCCCCEEEECCCEEEEECCCCCEEEEECCCC---CEEEEEECCCCCCCCCEEEEECCE
T ss_conf 64688707788373102578-88877405987998999778981999999998---582799899995516779998999
Q ss_pred -EEEEEEC
Q ss_conf -8999984
Q 002519 858 -SLLVIGC 864 (913)
Q Consensus 858 -~li~~s~ 864 (913)
+|++...
T Consensus 514 qyv~v~aG 521 (560)
T d1kv9a2 514 QYVAIMAG 521 (560)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
T ss_conf 99999917
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.36 E-value=0.14 Score=23.30 Aligned_cols=225 Identities=11% Similarity=0.174 Sum_probs=145.2
Q ss_pred EEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECCCC
Q ss_conf 99906999999996899099997899812368524798768999989999899995899099998689995248841578
Q 002519 639 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS 718 (913)
Q Consensus 639 i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~~~~~h~ 718 (913)
.-.+|..+.||.-+ ..++.+||+++...++.+.-.+ .|.--.|-.+ +.|+..+ +..|+-|+++....+.+.|..|.
T Consensus 68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~ 143 (327)
T d1utca2 68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 143 (327)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred HHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEECCC-CCEEEEECCC-CEEEEEC-CCCEEEECCCCCCCCHHHHHHCC
T ss_conf 53088875799962-8868998446822111587688-8579994479-8899991-88169973569998526623210
Q ss_pred ----CCEEEEEECCCCCEEEEEEE------CCCCEEEEECCCCEEEEEEECCCEEEE-EECCC----CEEEEEEC----C
Q ss_conf ----87379998389990999983------799299998579905678517810799-90399----97999985----9
Q 002519 719 ----ASVMSLDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHL----GRYLAAAA----E 779 (913)
Q Consensus 719 ----~~I~si~fspd~~~ll~sgs------~Dg~I~iwdi~~~~~~~~~~~~~~~i~-~sp~~----~~ll~~~~----d 779 (913)
..|.....+++.+.++++|= -.|.+.+|..+.. ....++++..+.. +..++ ..+++.+. .
T Consensus 144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~ 222 (327)
T d1utca2 144 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 222 (327)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred CCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEECCC-CCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCC
T ss_conf 1248638998989999889999571378830588889980228-675232034656888707998873099999878987
Q ss_pred CEEEEEECCCC--------EEEEEEC----CCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCC
Q ss_conf 91999978997--------0899950----799885899992999999999499-2999988889987137884039995
Q 002519 780 NVVSILDAETQ--------ACRLSLQ----GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 846 (913)
Q Consensus 780 g~I~i~D~~t~--------~~~~~l~----~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~ 846 (913)
+.+++.++... +....+. ...+--.++..++...+++..+.. .+.+||+.++ .++..-......
T Consensus 223 ~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg---t~i~~nRIs~~~ 299 (327)
T d1utca2 223 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGET 299 (327)
T ss_dssp EEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCSSC
T ss_pred CEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC---CEEEEEECCCCC
T ss_conf 47999986887557888753268877796346884779996433799999966758999975666---289994047884
Q ss_pred EEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 2999990799989999849819999
Q 002519 847 FHSCVFHPTYPSLLVIGCYQSLELW 871 (913)
Q Consensus 847 i~~i~~sp~g~~li~~s~dg~I~iw 871 (913)
+...+-..+..-+++...+|.|...
T Consensus 300 iF~~a~~~~~~Gi~~VNr~GqVl~v 324 (327)
T d1utca2 300 IFVTAPHEATAGIIGVNRKGQVLSV 324 (327)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEE
T ss_pred EEEECCCCCCCEEEEECCCCEEEEE
T ss_conf 4896267888608998789769999
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=93.26 E-value=0.14 Score=23.18 Aligned_cols=80 Identities=8% Similarity=0.026 Sum_probs=41.1
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCC-EEEEEEECCCC
Q ss_conf 919999789970899950799885899992999999999499-2999988889987137884039995-29999907999
Q 002519 780 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK-FHSCVFHPTYP 857 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~-i~~i~~sp~g~ 857 (913)
+.|.-||..+++.+..... ..++.+-..+-.+.+++.++.| .++.||.+++ +.+.++...... -.-+.|..+|+
T Consensus 453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TG---e~LW~~~~~~~~~a~P~tY~~dGk 528 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTG---DLLWKFKIPSGAIGYPMTYTHKGT 528 (596)
T ss_dssp EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETTE
T ss_pred CEEEEEECCCCCEECCCCC-CCCCCCCEEEECCCEEEEECCCCEEEEEECCCC---CEEEEEECCCCCCCCCEEEEECCE
T ss_conf 5389980788856233278-888744146866997999789995999999998---483699899995407768998999
Q ss_pred -EEEEEE
Q ss_conf -899998
Q 002519 858 -SLLVIG 863 (913)
Q Consensus 858 -~li~~s 863 (913)
+|++..
T Consensus 529 QYvav~~ 535 (596)
T d1w6sa_ 529 QYVAIYY 535 (596)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
T ss_conf 9999993
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.02 E-value=0.29 Score=20.56 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=41.5
Q ss_pred EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCE--EEEEEECCCC-
Q ss_conf 2999988889987137884039995299999079998999984981999979999189982668976--8999927999-
Q 002519 822 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLI--AALAVSTETG- 898 (913)
Q Consensus 822 ~I~iwdi~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~li~~s~dg~I~iwd~~~~~~~~~~~h~~~V--~~l~~spdg~- 898 (913)
.|.-+|+.++ +.+...... .++..-.....+..+++++.|+.++.||..+++++........+ .-+.|..+|+
T Consensus 467 ~l~AiD~~TG---~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 467 SLRAMDPVSG---KVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp EEEEECTTTC---CEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred EEEEECCCCC---CEEEECCCC-CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf 5999807899---587326779-997450169769869996799969999999986867988999962167799989999
Q ss_pred EEEEE
Q ss_conf 99999
Q 002519 899 YVASA 903 (913)
Q Consensus 899 ~Lasg 903 (913)
||+..
T Consensus 543 Yv~i~ 547 (582)
T d1flga_ 543 YLGVT 547 (582)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99999
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.20 E-value=0.33 Score=20.10 Aligned_cols=58 Identities=9% Similarity=0.096 Sum_probs=24.1
Q ss_pred EEEEEECCCCCEEEEEE-CCC----EEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 68999989999899995-899----0999986899952488415788737999838999099998
Q 002519 678 ITDVRFSPSMPRLATSS-FDK----TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSC 737 (913)
Q Consensus 678 I~~i~fspdg~~Lasgs-~Dg----~I~Iwdl~~~~~~~~~~~~h~~~I~si~fspd~~~ll~sg 737 (913)
+..++++|++++++.+- .+| .|+++|+.++......+.. .....+.|.+++..++++.
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~ 189 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNA 189 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEE
T ss_pred ECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCCCC--CCCCCEEECCCCCEEEEEE
T ss_conf 34258537898799995566672104677416764031442224--3236417857998999997
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=87.58 E-value=0.41 Score=19.33 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=47.7
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCE-EEEEEECCCC
Q ss_conf 919999789970899950799885899992999999999499-29999888899871378840399952-9999907999
Q 002519 780 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF-HSCVFHPTYP 857 (913)
Q Consensus 780 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l~s~s~d-~I~iwdi~s~~~~~~i~~~~~~~~~i-~~i~~sp~g~ 857 (913)
+.+.-||..+++.+..+.... +..+-...-.+.++++++.| .++.||.+++ +.+.++....... .-+.|..+|+
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TG---e~LW~~~~~~~~~~~P~ty~~~Gk 532 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATG---EKLWEAPTGTGVVAAPSTYMVDGR 532 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCEEEECCCCCCEEEEECCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCC---CEEEEEECCCCCCCCCEEEEECCE
T ss_conf 617875787786670516889-8877607986998999779991999999988---685799898994516779998999
Q ss_pred -EEEEEEC
Q ss_conf -8999984
Q 002519 858 -SLLVIGC 864 (913)
Q Consensus 858 -~li~~s~ 864 (913)
+|++...
T Consensus 533 QYv~v~~G 540 (573)
T d1kb0a2 533 QYVSVAVG 540 (573)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
T ss_conf 99999937
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.72 E-value=0.65 Score=17.65 Aligned_cols=94 Identities=9% Similarity=0.050 Sum_probs=58.1
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEE
Q ss_conf 87999990699999999689909999789981236852479876899998999989999589909999868999524884
Q 002519 635 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 714 (913)
Q Consensus 635 ~V~~i~fspdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~~~ 714 (913)
.|..++|+.| .|+... ++.+..++................+..+.++|. .++....++.+.++++.+.. .....
T Consensus 88 ~v~~vafs~d--~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~-~~~~~ 161 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS-TKQLA 161 (381)
T ss_dssp TEEEEEEETT--EEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC-EEEEE
T ss_pred CEEEEEEECC--EEEEEE-CCCEEEEEEECCCCCCCCCCCCCCCCCEECCCC--EEEEEECCCCEEEEEECCCC-CCCCC
T ss_conf 8689986189--899995-897899985100145446554556111021886--06999658977899941586-44444
Q ss_pred C-----CCCCCEEEEEECCCCCEEE
Q ss_conf 1-----5788737999838999099
Q 002519 715 M-----GHSASVMSLDFHPNKDDLI 734 (913)
Q Consensus 715 ~-----~h~~~I~si~fspd~~~ll 734 (913)
. .-...+.+++|++.+..++
T Consensus 162 ~~v~~~~~~~~~~~v~ws~kgkq~v 186 (381)
T d1xipa_ 162 QNVTSFDVTNSQLAVLLKDRSFQSF 186 (381)
T ss_dssp ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCCCEEEECCCCEEEEEECCCEEEE
T ss_conf 7752387338926999968968999
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=81.42 E-value=0.72 Score=17.29 Aligned_cols=186 Identities=16% Similarity=0.211 Sum_probs=99.8
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEC------CCCCEEEEEEC--C--CEEEEEECCCCCCEEE
Q ss_conf 699999999689909999789981236852479876899998------99998999958--9--9099998689995248
Q 002519 643 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS------PSMPRLATSSF--D--KTVRVWDADNPGYSLR 712 (913)
Q Consensus 643 pdg~~Lasgs~Dg~V~iwd~~t~~~~~~l~~h~~~I~~i~fs------pdg~~Lasgs~--D--g~I~Iwdl~~~~~~~~ 712 (913)
|+..+++....++-|++||+. ++.+..+.. +.+..|... .....|++++. + .+|.+|.+......+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred CCCCEEEEECCCCCEEEECCC-CCEEEECCC--CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCC
T ss_conf 672389997586887999189-968774036--77673243366435775068999957867630599998447666311
Q ss_pred EECCC-------CCCEEEEEE--CCC-CCEEEEEEECCCCEEEEECCC---C----EEEEEEEC--CCEEEEEECCCCEE
Q ss_conf 84157-------887379998--389-990999983799299998579---9----05678517--81079990399979
Q 002519 713 TFMGH-------SASVMSLDF--HPN-KDDLICSCDGDGEIRYWSINN---G----SCTRVFKG--GTAQMRFQPHLGRY 773 (913)
Q Consensus 713 ~~~~h-------~~~I~si~f--spd-~~~ll~sgs~Dg~I~iwdi~~---~----~~~~~~~~--~~~~i~~sp~~~~l 773 (913)
.+... ...+..+|+ ++. +..++++...+|.+..|.+.. + +.++.+.. ....+.+....+.+
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSL 194 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCE
T ss_conf 24665543345667656999774277780799997588608999997478972555763035888862169981788949
Q ss_pred EEEECCCEEEEEECCC-----CEEEEEECC--CCCCEEEEEECC--CCC-EEEEEECC--EEEEEECCCC
Q ss_conf 9998599199997899-----708999507--998858999929--999-99999499--2999988889
Q 002519 774 LAAAAENVVSILDAET-----QACRLSLQG--HTKPIDSVCWDP--SGE-LLASVSED--SVRVWTVGSG 831 (913)
Q Consensus 774 l~~~~dg~I~i~D~~t-----~~~~~~l~~--h~~~V~si~~sp--dg~-~l~s~s~d--~I~iwdi~s~ 831 (913)
+++-.+..|..++.+- ...+....+ ....+..|+.-. ++. ||++.+.+ +..+||....
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEECCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 9954755238888045777662243113675445785453799847998599997379976999956788
|