Citrus Sinensis ID: 002523
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 912 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C585 | 871 | Ubiquitin carboxyl-termin | yes | no | 0.858 | 0.898 | 0.534 | 0.0 | |
| O22207 | 924 | Ubiquitin carboxyl-termin | no | no | 0.872 | 0.861 | 0.422 | 1e-175 | |
| Q9ZSB5 | 923 | Ubiquitin carboxyl-termin | no | no | 0.791 | 0.782 | 0.457 | 1e-169 | |
| Q93Y01 | 910 | Ubiquitin carboxyl-termin | no | no | 0.786 | 0.787 | 0.457 | 1e-168 | |
| Q9MAQ3 | 892 | Putative ubiquitin carbox | no | no | 0.777 | 0.794 | 0.443 | 1e-164 | |
| A6QR55 | 963 | Ubiquitin carboxyl-termin | yes | no | 0.600 | 0.569 | 0.400 | 1e-109 | |
| P35123 | 962 | Ubiquitin carboxyl-termin | yes | no | 0.598 | 0.567 | 0.393 | 1e-109 | |
| B2GUZ1 | 961 | Ubiquitin carboxyl-termin | yes | no | 0.797 | 0.756 | 0.331 | 1e-109 | |
| F6Z5C0 | 982 | Ubiquitin carboxyl-termin | no | no | 0.607 | 0.564 | 0.397 | 1e-105 | |
| Q13107 | 963 | Ubiquitin carboxyl-termin | yes | no | 0.594 | 0.562 | 0.395 | 1e-105 |
| >sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/832 (53%), Positives = 568/832 (68%), Gaps = 49/832 (5%)
Query: 95 QKVYLVPYRWWKESQ------------ILLAEKVG---GVLYEVLSNDDNTDLEILLHLK 139
Q+VY VP RWWK++Q IL G G ++++N N+D IL L+
Sbjct: 24 QRVYFVPLRWWKDAQDSMPSESVEKREILYTASCGSSYGGPMKLINNIFNSD--ILFDLR 81
Query: 140 KKEGSV-DSDCGEGGVSVREYALVPEGMWLRALKWHNDSK---AAVKDFGSSFAADEQDV 195
++ ++ + + GE VS R++ALV MWL+ALKW++D K VK F S+ D DV
Sbjct: 82 REGDALQNGETGEASVSGRDFALVSSDMWLQALKWYHDDKNTEKGVKSF-SAGGVDRGDV 140
Query: 196 FPLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMND 255
+P+Q+RLSV QETNSL VKI +DN V+ ++RAC +F SE L IWD SGQTT F +D
Sbjct: 141 YPVQLRLSVLQETNSLAVKICKKDNSVECFRRACKIFSLDSEQLRIWDISGQTTLFFESD 200
Query: 256 RVTMSDDFSAKPGEEVFLQLQVHGFSDSVGETNDEMAEHYKIIDSICNGSVKINGSNDNL 315
V+ S D + +E+ L+LQ++G SDS+ ++ E K S + NG N
Sbjct: 201 -VSNSKDCQQQADQEILLELQIYGLSDSI-----KLKESKKEDGSTQQTNGITNGMNGGT 254
Query: 316 NSYITSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKE 375
SNS+ G LGLTGL+NLGNTCFMNS++QCLAHTP++VD+FLG+Y KE
Sbjct: 255 VFRFGRSNSLSFLGKAGEAGTLGLTGLQNLGNTCFMNSSLQCLAHTPKLVDFFLGEYSKE 314
Query: 376 INYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFL 435
IN +NPLG+ GE+ALAFGDLLR LWAPG VAPR FK KLA FAPQFSG+NQHDSQE L
Sbjct: 315 INLDNPLGMKGEIALAFGDLLRSLWAPGASTVAPRTFKAKLARFAPQFSGFNQHDSQELL 374
Query: 436 AFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495
AFLLDGLHEDLNRVK KPY+EAKD +G+P+ EVA+EYWRNH ARNDSIIVD+CQGQY+S
Sbjct: 375 AFLLDGLHEDLNRVKNKPYVEAKDGDGRPDAEVADEYWRNHVARNDSIIVDVCQGQYKST 434
Query: 496 LVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDL 555
LVCP+C KVSV FDP MYLSLP+P T+MRTM +TV+S DGS++P P TV VPK+G+F+DL
Sbjct: 435 LVCPICKKVSVMFDPFMYLSLPLPCTSMRTMDLTVMSADGSSLPIPLTVNVPKFGKFEDL 494
Query: 556 IDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSL 615
AL T C L E LLV E+Y ++I R L+EP+D L LIRD DKLV YRL KD+ L
Sbjct: 495 HKALVTACSLPEEETLLVTEVYNNRIIRFLEEPTDSLTLIRDGDKLVVYRLKKDANNSPL 554
Query: 616 VLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRKLFLKLLDPFLMP----V 671
+++MH++ EE G+ S WK FG PLV RL D+ NGSD+ L+LKLL F MP
Sbjct: 555 IVYMHQKLEEQFISGKSSPTWKAFGIPLVSRLCDVENGSDVENLYLKLLSSFKMPTEFFT 614
Query: 672 GDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEP----HLSDDFQFYRLD 727
+ + ++E V + +D V +++E+ +P +L+DD R +
Sbjct: 615 ENLENPTEEEATDKTDTDGTTSVEDTNSTD---VKETTESLPDPVLRLYLTDD----RGN 667
Query: 728 SIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPES 787
SI E+ +P++ S K L + +W K ++ YDTCLLSSL EV K T+ P ES
Sbjct: 668 SIE-AEMLKEKPVNKS---KRLNVLARWPVKELDVYDTCLLSSLPEVSKSG--TKRPQES 721
Query: 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFK 847
VSL+KCLEAFL EEPLGP+DMWYCP CK+H QA KKLDLWR P+ILVIHLKRFS+SR+ K
Sbjct: 722 VSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILVIHLKRFSYSRFMK 781
Query: 848 SKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFV 899
+KL+ YVDFP+D+LDLS+Y+ KN Q + RY+LYAISNHYG MGGGHYTA+V
Sbjct: 782 NKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGGGHYTAYV 833
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Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2 |
| >sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana GN=UBP10 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q93Y01|UBP9_ARATH Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana GN=UBP9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana GN=UBP11 PE=3 SV=2 | Back alignment and function description |
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| >sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2 SV=1 | Back alignment and function description |
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| >sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4 PE=1 SV=3 | Back alignment and function description |
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| >sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus GN=Usp4 PE=1 SV=1 | Back alignment and function description |
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| >sp|F6Z5C0|UBP15_XENTR Ubiquitin carboxyl-terminal hydrolase 15 OS=Xenopus tropicalis GN=usp15 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 912 | ||||||
| 225439374 | 961 | PREDICTED: ubiquitin carboxyl-terminal h | 0.938 | 0.890 | 0.605 | 0.0 | |
| 359479088 | 882 | PREDICTED: ubiquitin carboxyl-terminal h | 0.870 | 0.900 | 0.564 | 0.0 | |
| 449501186 | 949 | PREDICTED: ubiquitin carboxyl-terminal h | 0.927 | 0.891 | 0.566 | 0.0 | |
| 255549649 | 889 | Ubiquitin carboxyl-terminal hydrolase, p | 0.881 | 0.904 | 0.562 | 0.0 | |
| 449444827 | 877 | PREDICTED: ubiquitin carboxyl-terminal h | 0.855 | 0.889 | 0.544 | 0.0 | |
| 356543638 | 874 | PREDICTED: ubiquitin carboxyl-terminal h | 0.869 | 0.907 | 0.549 | 0.0 | |
| 356550050 | 872 | PREDICTED: ubiquitin carboxyl-terminal h | 0.869 | 0.909 | 0.549 | 0.0 | |
| 357453291 | 871 | Ubiquitin carboxyl-terminal hydrolase [M | 0.850 | 0.890 | 0.544 | 0.0 | |
| 257050978 | 871 | RecName: Full=Ubiquitin carboxyl-termina | 0.858 | 0.898 | 0.534 | 0.0 | |
| 13374862 | 901 | ubiquitin-specific protease-like protein | 0.858 | 0.869 | 0.515 | 0.0 |
| >gi|225439374|ref|XP_002270470.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1026 bits (2653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/903 (60%), Positives = 659/903 (72%), Gaps = 47/903 (5%)
Query: 22 LSRVSLSTLRLCKSLLSKTLAGLFSAMDHDYPFSSEGDDHLFEFDYSNSSRQNNYFSQPT 81
++ ++S LR CKSL L S D F G+D FEFD S+R +
Sbjct: 39 ITHFAISALRFCKSLFYYLLFKTLSFFTMDDIF---GEDDFFEFDDGRSNRVS------- 88
Query: 82 ATNSRGLFDDDDR--QKVYLVPYRWWKESQILLAEKVGGVLY-----------EVLSNDD 128
+++ R +KVY VPYRW E+ + G+LY E++S+D
Sbjct: 89 --------EEEIRVEEKVYFVPYRWLNEAHGTSLGENEGILYTASSSTCVGSMEIMSSD- 139
Query: 129 NTDLEILLHLKKKEGSVDSDCGEGGVSVREYALVPEGMWLRALKWHNDSKAAVKDFGSSF 188
D +I+L+L+++E + ++ E GVS +EYAL+ E MWLRALKWHNDS AA KD GS
Sbjct: 140 -FDSQIVLNLRREEDNGKNEAAEEGVSGQEYALLSESMWLRALKWHNDSNAAEKDVGSIL 198
Query: 189 AAD--EQDVFPLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSG 246
AA+ QDVFPLQIRLSVS TNSLLVKIS +DN +++Y+RA +F SE+L+IWDFSG
Sbjct: 199 AAEVYTQDVFPLQIRLSVSWGTNSLLVKISQKDNPIEIYERASTIFRVESELLHIWDFSG 258
Query: 247 QTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSDSV----GETNDEMAEHYKIIDSIC 302
QTT LMNDR ++D+ ++ E++ L+LQV+G +DS+ G+ +D+M K+ S
Sbjct: 259 QTTLLLMNDRTKSANDYLSRSDEQILLELQVYGLTDSMKGRGGKKDDQMVGQTKMEGSFV 318
Query: 303 NGSVKINGSNDNLNSYITSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTP 362
+GS+K+NGS N +SY T ++ G G LGLTGL N+GNTCFMNSAIQCL HTP
Sbjct: 319 SGSLKMNGSTGNFDSYFTLPHTKLFGRGYREAGFLGLTGLHNIGNTCFMNSAIQCLVHTP 378
Query: 363 EIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQ 422
++VDYFLGDY+KEINYENPLG+NGELALAFGDLLRKLWAPG PVAPRMFKLKL++FAPQ
Sbjct: 379 KLVDYFLGDYRKEINYENPLGMNGELALAFGDLLRKLWAPGATPVAPRMFKLKLSSFAPQ 438
Query: 423 FSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDS 482
FSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPY+EA D +G+P+EEVA+EYWRNH ARNDS
Sbjct: 439 FSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYIEAGDPDGRPDEEVADEYWRNHLARNDS 498
Query: 483 IIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPF 542
IIV+LCQGQ+RSMLVCPVC KVSVTFDP MYLSLP+PSTTMRTMTVTVLSTDG+T+P P
Sbjct: 499 IIVNLCQGQFRSMLVCPVCKKVSVTFDPFMYLSLPLPSTTMRTMTVTVLSTDGTTLPYPC 558
Query: 543 TVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLV 602
TVTVPK GR +DLI ALS C LRN E+LLVAEIY + I R L+EPSD L LIRD D+LV
Sbjct: 559 TVTVPKCGRLKDLIQALSIACSLRNDERLLVAEIYNNCIIRYLEEPSDSLALIRDGDRLV 618
Query: 603 AYRLPKDS---ETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRKL 659
AYRL +DS +T SLV+FMHER E+ G+ L K+FG PLV R+S+ +NG DI K
Sbjct: 619 AYRLSEDSKDCDTSSLVVFMHERVEKHDINGKAELCRKMFGIPLVVRMSECSNGCDIHKQ 678
Query: 660 FLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSD 719
FLKLLDPF MP D D AG N D+ +ED SS VS+ DA SD SE GDE L +
Sbjct: 679 FLKLLDPFFMPTEDSLD-DITAGNAANEDTEMEDAISSTVSNGDANSD-SETGDELQLGN 736
Query: 720 DFQFYRLD---SIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCK 776
+F FY D S + + I MN+ IS + L + V W +MIEKYDTCLLS L E+CK
Sbjct: 737 NFSFYLTDEKGSTKGSNINMNKLELISQLPRRLNVLVHWPYRMIEKYDTCLLSLLPEICK 796
Query: 777 PQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIH 836
P+LF + P ESVSLYKCLEAFLKEEPLGPEDMW CP CKKH QASKKLDLWR P+ILVIH
Sbjct: 797 PELFAKRPQESVSLYKCLEAFLKEEPLGPEDMWNCPCCKKHRQASKKLDLWRLPEILVIH 856
Query: 837 LKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYT 896
LKRFS+SR++K+KL+T++DFPIDDLDLS Y+ KNS LSN Y LYAI NHYGGMG GHYT
Sbjct: 857 LKRFSYSRFWKNKLETFIDFPIDDLDLSTYIAQKNSHLSNHYKLYAICNHYGGMGSGHYT 916
Query: 897 AFV 899
AFV
Sbjct: 917 AFV 919
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479088|ref|XP_003632213.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449501186|ref|XP_004161301.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255549649|ref|XP_002515876.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] gi|223545031|gb|EEF46545.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449444827|ref|XP_004140175.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356543638|ref|XP_003540267.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356550050|ref|XP_003543403.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357453291|ref|XP_003596922.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355485970|gb|AES67173.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|257050978|sp|Q9C585.2|UBP8_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 8; AltName: Full=Deubiquitinating enzyme 8; Short=AtUBP8; AltName: Full=Ubiquitin thioesterase 8; AltName: Full=Ubiquitin-specific-processing protease 8 | Back alignment and taxonomy information |
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| >gi|13374862|emb|CAC34496.1| ubiquitin-specific protease-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C585 | UBP8_ARATH | 3, ., 4, ., 1, 9, ., 1, 2 | 0.5348 | 0.8585 | 0.8989 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.19 | 0.921 |
| 3rd Layer | 3.4.19.12 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 912 | |||
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 1e-123 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 2e-48 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 7e-45 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 2e-36 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 1e-28 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 8e-27 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 3e-25 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 6e-24 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 1e-21 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 7e-18 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 1e-17 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 8e-16 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 1e-15 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 5e-15 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 1e-13 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 3e-13 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 4e-12 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 1e-11 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 1e-11 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 2e-11 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 8e-11 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 2e-10 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 3e-08 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 7e-08 | |
| COG5207 | 749 | COG5207, UBP14, Isopeptidase T [Posttranslational | 1e-07 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 7e-07 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 8e-07 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 2e-06 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 4e-06 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 4e-06 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 7e-06 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 7e-06 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 1e-05 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 6e-05 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 1e-04 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 3e-04 | |
| COG5077 | 1089 | COG5077, COG5077, Ubiquitin carboxyl-terminal hydr | 0.001 | |
| COG5077 | 1089 | COG5077, COG5077, Ubiquitin carboxyl-terminal hydr | 0.002 |
| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 393 bits (1012), Expect = e-123
Identities = 230/696 (33%), Positives = 313/696 (44%), Gaps = 100/696 (14%)
Query: 223 DLYKRACNLFISVSEMLYIWDFS----GQTT---QFLMNDRVTMSDDFSAKPGEEVFLQL 275
DL +R N F+ S+ +WD G F RV SD P
Sbjct: 171 DLSERVMNAFVDPSDDFRLWDVVPEIMGLRLGLDSFFRRYRVLASDGRVLHP-------- 222
Query: 276 QVHGFSDSVGETNDEMAEHYKIIDSICNGSVKINGSNDNLNSYITSSNSVRRGSGNGGVC 335
+ D KI + D L +S+
Sbjct: 223 ---------------LTRLELFEDRSVLLLSKITRNPDWL------VDSIVDDHNRSINK 261
Query: 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGD 394
G GLRNLGNTC+MNSA+QCL HT E+ DYFL D Y++ IN ENPLG++G +A A+ D
Sbjct: 262 EAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYAD 321
Query: 395 LLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPY 454
L+++L+ P FK + +F +FSGY+Q DSQEF+AFLLDGLHEDLNR+ KPY
Sbjct: 322 LIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPY 381
Query: 455 LEAKDAEGQPEEEV---AEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPL 511
D + V A+E W H RNDSII DL QG Y+S L CP C VS+TFDP
Sbjct: 382 TSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPF 441
Query: 512 MYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKL 571
M L+LP+P + + T+ V G P + + + L + + ++
Sbjct: 442 MDLTLPLPVSMVWKHTIVVFPESGR--RQPLKIELDASSTIRGLKKLVDAEYGKLGCFEI 499
Query: 572 LVAEIYRSKIFRVLDEPSD-LLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLG 630
V IY + +L+ LL I D + Y D+ V +H R E+
Sbjct: 500 KVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYE-TNDNGI--EVPVVHLRIEKGYKSK 556
Query: 631 RLSLEWKIFGTPLVGRLSDLTNGS---DIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNG 687
RL FG P + +L+ L S + K F +LL M D D E ++
Sbjct: 557 RL------FGDPFL-QLNVLIKASIYDKLVKEFEELLVLVEMKK-TDVDLVSEQVRLLRE 608
Query: 688 DSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNEPLSISDFAK 747
+S + D R + + MN +
Sbjct: 609 ESSP-----------SSWLKLETEIDTK---------REEQVEEEGQ-MNFNDA------ 641
Query: 748 PLTIHVQWAEKMIEK---YDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLG 804
+ I +W EK YD + + +++L CL F K E LG
Sbjct: 642 -VVISCEWEEKRYLSLFSYDPLWTIREIGAAER---------TITLQDCLNEFSKPEQLG 691
Query: 805 PEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLS 864
D WYCP CK+ QASK+++LWR P IL+IHLKRFS R F+ K+D V++PIDDLDLS
Sbjct: 692 LSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLS 751
Query: 865 NYVCCK-NSQLSNRYVLYAISNHYGGMGGGHYTAFV 899
+ +L Y LYA+ NHYGG+ GGHYTA+
Sbjct: 752 GVEYMVDDPRLI--YDLYAVDNHYGGLSGGHYTAYA 785
|
Length = 823 |
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 912 | |||
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 100.0 | |
| KOG1870 | 842 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 100.0 | |
| KOG1865 | 545 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1868 | 653 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 100.0 | |
| KOG1873 | 877 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| KOG1867 | 492 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 100.0 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 100.0 | |
| PF00443 | 269 | UCH: Ubiquitin carboxyl-terminal hydrolase; InterP | 100.0 | |
| KOG1866 | 944 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| COG5077 | 1089 | Ubiquitin carboxyl-terminal hydrolase [Posttransla | 100.0 | |
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 100.0 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 100.0 | |
| cd02672 | 268 | Peptidase_C19P A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG4598 | 1203 | consensus Putative ubiquitin-specific protease [Po | 100.0 | |
| KOG1863 | 1093 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 99.97 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 99.96 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 99.95 | |
| PF13423 | 295 | UCH_1: Ubiquitin carboxyl-terminal hydrolase | 99.95 | |
| KOG1872 | 473 | consensus Ubiquitin-specific protease [Posttransla | 99.94 | |
| KOG2026 | 442 | consensus Spindle pole body protein - Sad1p [Cytos | 99.91 | |
| KOG1871 | 420 | consensus Ubiquitin-specific protease [Posttransla | 99.9 | |
| PF06337 | 99 | DUSP: DUSP domain; InterPro: IPR006615 Deubiquitin | 99.73 | |
| smart00695 | 86 | DUSP Domain in ubiquitin-specific proteases. | 99.68 | |
| PF14836 | 88 | Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A | 99.51 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.68 | |
| PF14533 | 213 | USP7_C2: Ubiquitin-specific protease C-terminal; P | 98.03 | |
| cd01796 | 71 | DDI1_N DNA damage inducible protein 1 ubiquitin-li | 96.8 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 96.77 | |
| cd01807 | 74 | GDX_N ubiquitin-like domain of GDX. GDX contains a | 96.61 | |
| cd01812 | 71 | BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter | 96.6 | |
| cd01813 | 74 | UBP_N UBP ubiquitin processing protease. The UBP ( | 96.55 | |
| PTZ00044 | 76 | ubiquitin; Provisional | 96.54 | |
| cd01795 | 107 | USP48_C USP ubiquitin-specific protease. The USP ( | 96.34 | |
| cd01810 | 74 | ISG15_repeat2 ISG15 ubiquitin-like protein, second | 96.25 | |
| cd01794 | 70 | DC_UbP_C dendritic cell derived ubiquitin-like pro | 96.23 | |
| PF14560 | 87 | Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K | 96.21 | |
| PF00240 | 69 | ubiquitin: Ubiquitin family; InterPro: IPR000626 U | 96.19 | |
| cd01806 | 76 | Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn | 96.17 | |
| cd01799 | 75 | Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO | 96.11 | |
| cd01800 | 76 | SF3a120_C Ubiquitin-like domain of Mammalian splic | 96.01 | |
| cd01803 | 76 | Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 | 95.96 | |
| cd01793 | 74 | Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui | 95.93 | |
| cd01805 | 77 | RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo | 95.9 | |
| cd01798 | 70 | parkin_N amino-terminal ubiquitin-like of parkin p | 95.85 | |
| cd01797 | 78 | NIRF_N amino-terminal ubiquitin-like domain of Np9 | 95.8 | |
| cd01804 | 78 | midnolin_N Ubiquitin-like domain of midnolin. midn | 95.68 | |
| cd01802 | 103 | AN1_N ubiquitin-like domain of AN1. AN1 (also know | 95.59 | |
| cd01809 | 72 | Scythe_N Ubiquitin-like domain of Scythe protein. | 95.57 | |
| cd01792 | 80 | ISG15_repeat1 ISG15 ubiquitin-like protein, first | 95.36 | |
| cd01791 | 73 | Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know | 95.23 | |
| cd01808 | 71 | hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC | 95.23 | |
| cd01763 | 87 | Sumo Small ubiquitin-related modifier (SUMO). Smal | 94.99 | |
| cd01789 | 84 | Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol | 94.62 | |
| cd01769 | 69 | UBL Ubiquitin-like domain of UBL. UBLs function by | 93.73 | |
| smart00213 | 64 | UBQ Ubiquitin homologues. Ubiquitin-mediated prote | 93.7 | |
| PF11543 | 80 | UN_NPL4: Nuclear pore localisation protein NPL4; I | 92.21 | |
| PF11976 | 72 | Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter | 92.18 | |
| PF00789 | 82 | UBX: UBX domain; InterPro: IPR001012 The UBX domai | 92.11 | |
| TIGR00601 | 378 | rad23 UV excision repair protein Rad23. All protei | 91.78 | |
| cd01788 | 119 | ElonginB Ubiquitin-like domain of Elongin B. Elong | 89.74 | |
| smart00166 | 80 | UBX Domain present in ubiquitin-regulatory protein | 89.53 | |
| cd01774 | 85 | Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i | 86.5 | |
| cd01773 | 82 | Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i | 85.37 | |
| cd01771 | 80 | Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac | 84.69 | |
| cd01767 | 77 | UBX UBX (ubiquitin regulatory X) domain. The UBX ( | 84.5 | |
| cd01790 | 79 | Herp_N Homocysteine-responsive endoplasmic reticul | 83.69 | |
| cd01815 | 75 | BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC | 81.74 |
| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-109 Score=914.38 Aligned_cols=711 Identities=31% Similarity=0.483 Sum_probs=536.4
Q ss_pred EEEEEcchhHHHHHHhhcccCCCccCCCCCCCCChhhhhhhhhcccCCCCCCCcCCCCcCCCCeEEcCHHHHHHHHHHcC
Q 002523 96 KVYLVPYRWWKESQILLAEKVGGVLYEVLSNDDNTDLEILLHLKKKEGSVDSDCGEGGVSVREYALVPEGMWLRALKWHN 175 (912)
Q Consensus 96 ~~yli~~~W~~~w~~~v~~~~~g~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~lk~~l~e~~Dy~~Vp~~~W~~l~~wYG 175 (912)
..|+|++.|+....++...+. . .||||+--.|+ |-+...+|..+.++.||.+|++.+|+.|++|||
T Consensus 46 ~a~i~~y~wyeg~fd~~~~dg----~-~pgPi~q~~i~---------d~e~e~lk~sl~e~idysiis~~vw~llvrwyG 111 (823)
T COG5560 46 YAVIFAYAWYEGMFDRASCDG----G-SPGPIVQGPIV---------DFEPESLKKSLREGIDYSIISGAVWQLLVRWYG 111 (823)
T ss_pred eEEEEehHHhhhhcccccccC----C-CCCCCCccccc---------ccChhhcchhhhcCCCeeeechHHHHHHHHHhc
Confidence 899999999999888776654 2 39999998887 456789999999999999999999999999999
Q ss_pred -CCcce-EeccCC-CCCCcceeeeeeEEEEeeecC---------CCeEEEEEccCCcHHHHHHHHHhhcCCCCCceEEEE
Q 002523 176 -DSKAA-VKDFGS-SFAADEQDVFPLQIRLSVSQE---------TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWD 243 (912)
Q Consensus 176 -g~p~I-vi~~~~-~~~~~~vEvYPl~lkl~~~~d---------~~~~~i~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~ 243 (912)
.|+.+ ++..+. +..+..||+||+.+++....+ ...+.+.+|...|+.++.+++..+|-.|.++.|||+
T Consensus 112 l~gl~~pr~tvll~ses~p~ve~yp~~f~lh~Lf~ing~~~n~gh~p~~~s~ss~~tlrdl~e~vmnaf~~psD~FRLw~ 191 (823)
T COG5560 112 LAGLITPRITVLLPSESAPEVESYPVVFKLHWLFSINGSLINLGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWD 191 (823)
T ss_pred ccccceeeEEeccccccCCccccccceEEEEEEEeccchhhhcCCCcceeeccccchHHHHHHHHHHHhcCcccceeEEE
Confidence 45555 333332 444558999999999876543 135678999999999999999999999999999999
Q ss_pred ecCCccccccccccccccccc--cCCCC---------------eEEEEEe-ecCcccCcCCccccccccccccccccCCC
Q 002523 244 FSGQTTQFLMNDRVTMSDDFS--AKPGE---------------EVFLQLQ-VHGFSDSVGETNDEMAEHYKIIDSICNGS 305 (912)
Q Consensus 244 ~~~~~~~~lL~d~~~tL~d~~--l~~~q---------------~IllE~k-~dG~W~~~~~~~~~~~~~~~~~~~~~~~~ 305 (912)
+...+....+.+.. +..+.. ...++ ..+++.. .++.|+...-
T Consensus 192 v~~~~~~~r~~~~s-~f~~~~~~a~~~~~l~~~t~~el~~d~s~lll~kit~np~wlvdsi------------------- 251 (823)
T COG5560 192 VVPEIMGLRLGLDS-FFRRYRVLASDGRVLHPLTRLELFEDRSVLLLSKITRNPDWLVDSI------------------- 251 (823)
T ss_pred ecCCcccccccCHH-HHhhcchhccchhhhcccHHHHhccchhhhHHhhhccCCccceeee-------------------
Confidence 87554332221111 000100 01111 1111111 2233332100
Q ss_pred ccccCCCCCCCccccCCCccccCCCCCccccccccccccCCCcchHHHHHHHHhCChHHHHHHHh-hcccccccCCCCCC
Q 002523 306 VKINGSNDNLNSYITSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLG-DYQKEINYENPLGL 384 (912)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~ll~-~~~~~~~~~n~l~~ 384 (912)
...+|... .+ ..|.+||.|+||||||||+||||.|+++||+||+. .|..++|..||+|+
T Consensus 252 -------------~~~~n~si-----nk--e~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgm 311 (823)
T COG5560 252 -------------VDDHNRSI-----NK--EAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGM 311 (823)
T ss_pred -------------cchhhhhH-----Hh--hccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccch
Confidence 00011111 11 14999999999999999999999999999999996 49999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCCccChHHHHHHHhhhCCCCCCCCcCCHHHHHHHHHHHHHHHhhhcccCCccccccCCCCC
Q 002523 385 NGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQP 464 (912)
Q Consensus 385 ~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~ 464 (912)
.|.+|.+|+.|+++++.++..+++|..|+..|+.++..|.||.|||+|||+++|||+|||+|||+.+|||.+..|-....
T Consensus 312 hg~vAsayadLik~ly~~~~haf~Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d 391 (823)
T COG5560 312 HGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGD 391 (823)
T ss_pred hhhHHHHHHHHHHHHhCccccccChHHHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887643322
Q ss_pred ---hHHHHHHHHHhhhcCCCccccccccEEEEEEEecCCCCCeeeeeecceeEEecCCCCCccceEEEEEcCCCCCCCee
Q 002523 465 ---EEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAP 541 (912)
Q Consensus 465 ---~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~l~C~~C~~~s~~~e~F~~LsL~Ip~~~~~~~~v~~~~~d~~~~p~~ 541 (912)
-+..|+++|..|.+||+|+|+++|+|.++|+++|+.|+.+|++||||++|+||||....|..+|++||.+|...|
T Consensus 392 ~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~p-- 469 (823)
T COG5560 392 DVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQP-- 469 (823)
T ss_pred hHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCc--
Confidence 255799999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eEEEeCCCCCHHHHHHHHHhhcCCCCCCcEEEEEEecceeeeeccCCcc-cccccCCCCcEEEEEcCCCCCCCceEEEee
Q 002523 542 FTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSD-LLGLIRDEDKLVAYRLPKDSETPSLVLFMH 620 (912)
Q Consensus 542 ~~v~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ei~~~~i~~~~~~~~~-~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~ 620 (912)
..+++.+.+++.+|++.+....|+.....+.+.++|.+++++.++...+ .+..|.+.|.+|.|+ ..++...++++|
T Consensus 470 l~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe---~~~ngi~vpvvh 546 (823)
T COG5560 470 LKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYE---TNDNGIEVPVVH 546 (823)
T ss_pred eEEEEeccchHHHHHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEee---cCCCCeEEEEEe
Confidence 5677888899999999888888877777899999999999999997666 457799999999999 344457899999
Q ss_pred ecccccccccccccceeeeccce-EEEc-CCCCChhHHHHHHHHhcCCccC-CCCCCCCcccccCCCCCCCccccccccc
Q 002523 621 ERKEESCHLGRLSLEWKIFGTPL-VGRL-SDLTNGSDIRKLFLKLLDPFLM-PVGDDSDFSDEAGKIDNGDSIVEDVTSS 697 (912)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~fg~P~-~~~v-~~~~~~~~l~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (912)
.+.++ .+.+..+||.|+ -..+ ....-.++|-+...+++....+ +++-...+.+.. -...+.+
T Consensus 547 ~~~~~------gYks~rlFg~pflqlnv~~~~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~-l~r~es~-------- 611 (823)
T COG5560 547 LRIEK------GYKSKRLFGDPFLQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVR-LLREESS-------- 611 (823)
T ss_pred ccccc------cccchhhhCCcceEEEeecchhhHHHHHHHHHHHHHHHhhcchhhhhhhhhcc-chhcccC--------
Confidence 97664 266788999996 2333 3333333443322222221111 121111111100 0000000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccCCCCCcCCCCCCeEEEEecChhhHhhhhhhhhhhhhhcccc
Q 002523 698 RVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKP 777 (912)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~ 777 (912)
+.. . |.+..+......+..+.+...+.+..+.|.+.|.+......+.. ..+.-..+.
T Consensus 612 p~~--------w-------------l~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy--~~lw~~~ei 668 (823)
T COG5560 612 PSS--------W-------------LKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSY--DPLWTIREI 668 (823)
T ss_pred cch--------h-------------hhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcC--CccchhHHh
Confidence 000 0 00000000000000001111233556789999999876543220 000000011
Q ss_pred ccccCCCCCccCHHHHHHHhhCcccCCCCCCCCCCCcccccceEEEEEeecCCceeEEEEeeeEEcCceecccceEEecC
Q 002523 778 QLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFP 857 (912)
Q Consensus 778 ~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~Ck~~~~AtKk~~l~~lP~iLiIHLKRF~~~~~~~~Ki~~~V~FP 857 (912)
+. ....+||+|||.+|.++|+|+..|.||||.||++++|+|+++||++|.|||||||||++.+.+++||++.|+||
T Consensus 669 ~~----~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVeyP 744 (823)
T COG5560 669 GA----AERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYP 744 (823)
T ss_pred hh----ccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhccc
Confidence 11 13689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCCccEEEEEEEEeeecCCCceEEEEEEe---CCeEEEE
Q 002523 858 IDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDV---SCVYSFH 908 (912)
Q Consensus 858 i~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~---~~~~~f~ 908 (912)
|.+|||+.|+..... ...+|+||||.||||++||||||||+|+ ++||.|+
T Consensus 745 iddldLs~~~~~~~~-p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fd 797 (823)
T COG5560 745 IDDLDLSGVEYMVDD-PRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFD 797 (823)
T ss_pred cccccccceEEeecC-cceEEEeeeccccccccCCcceeeeeecccCCceEEec
Confidence 999999999877655 5599999999999999999999999998 3688775
|
|
| >KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02672 Peptidase_C19P A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins | Back alignment and domain information |
|---|
| >smart00695 DUSP Domain in ubiquitin-specific proteases | Back alignment and domain information |
|---|
| >PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A | Back alignment and domain information |
|---|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A | Back alignment and domain information |
|---|
| >cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01807 GDX_N ubiquitin-like domain of GDX | Back alignment and domain information |
|---|
| >cd01812 BAG1_N Ubiquitin-like domain of BAG1 | Back alignment and domain information |
|---|
| >cd01813 UBP_N UBP ubiquitin processing protease | Back alignment and domain information |
|---|
| >PTZ00044 ubiquitin; Provisional | Back alignment and domain information |
|---|
| >cd01795 USP48_C USP ubiquitin-specific protease | Back alignment and domain information |
|---|
| >cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 | Back alignment and domain information |
|---|
| >cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein | Back alignment and domain information |
|---|
| >PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A | Back alignment and domain information |
|---|
| >PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade | Back alignment and domain information |
|---|
| >cd01806 Nedd8 Nebb8-like ubiquitin protein | Back alignment and domain information |
|---|
| >cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 | Back alignment and domain information |
|---|
| >cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 | Back alignment and domain information |
|---|
| >cd01803 Ubiquitin Ubiquitin | Back alignment and domain information |
|---|
| >cd01793 Fubi Fubi ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01805 RAD23_N Ubiquitin-like domain of RAD23 | Back alignment and domain information |
|---|
| >cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein | Back alignment and domain information |
|---|
| >cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF | Back alignment and domain information |
|---|
| >cd01804 midnolin_N Ubiquitin-like domain of midnolin | Back alignment and domain information |
|---|
| >cd01802 AN1_N ubiquitin-like domain of AN1 | Back alignment and domain information |
|---|
| >cd01809 Scythe_N Ubiquitin-like domain of Scythe protein | Back alignment and domain information |
|---|
| >cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 | Back alignment and domain information |
|---|
| >cd01791 Ubl5 UBL5 ubiquitin-like modifier | Back alignment and domain information |
|---|
| >cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 | Back alignment and domain information |
|---|
| >cd01763 Sumo Small ubiquitin-related modifier (SUMO) | Back alignment and domain information |
|---|
| >cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B | Back alignment and domain information |
|---|
| >cd01769 UBL Ubiquitin-like domain of UBL | Back alignment and domain information |
|---|
| >smart00213 UBQ Ubiquitin homologues | Back alignment and domain information |
|---|
| >PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway | Back alignment and domain information |
|---|
| >PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins | Back alignment and domain information |
|---|
| >PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast | Back alignment and domain information |
|---|
| >TIGR00601 rad23 UV excision repair protein Rad23 | Back alignment and domain information |
|---|
| >cd01788 ElonginB Ubiquitin-like domain of Elongin B | Back alignment and domain information |
|---|
| >smart00166 UBX Domain present in ubiquitin-regulatory proteins | Back alignment and domain information |
|---|
| >cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain | Back alignment and domain information |
|---|
| >cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain | Back alignment and domain information |
|---|
| >cd01771 Faf1_UBX Faf1 UBX domain | Back alignment and domain information |
|---|
| >cd01767 UBX UBX (ubiquitin regulatory X) domain | Back alignment and domain information |
|---|
| >cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein | Back alignment and domain information |
|---|
| >cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 912 | ||||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 4e-57 | ||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 2e-32 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 1e-36 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 1e-24 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 2e-34 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 2e-24 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 2e-29 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 8e-16 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 2e-29 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 8e-16 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 3e-29 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 2e-15 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 2e-28 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 8e-16 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 2e-20 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 5e-17 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 2e-20 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 5e-17 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 2e-20 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 5e-17 | ||
| 4fip_A | 476 | Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- | 6e-09 | ||
| 3mhh_A | 476 | Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE | 6e-09 | ||
| 3m99_A | 471 | Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod | 7e-09 |
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
|
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
| >pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 | Back alignment and structure |
| >pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 | Back alignment and structure |
| >pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
Score = 287 bits (737), Expect = 5e-89
Identities = 90/211 (42%), Positives = 130/211 (61%), Gaps = 1/211 (0%)
Query: 320 TSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFL-GDYQKEINY 378
S++ +R + G LTGLRNLGNTC+MNS +QCL + P + DYF YQ +IN
Sbjct: 43 LSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINR 102
Query: 379 ENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFL 438
N LG GE+A FG +++ LW ++P+ FK+ + QF+GY+Q DSQE L FL
Sbjct: 103 SNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFL 162
Query: 439 LDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVC 498
+DGLHEDLN+ + + ++ + + + AE W+ H+ N+SIIV L QGQ++S + C
Sbjct: 163 MDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQC 222
Query: 499 PVCNKVSVTFDPLMYLSLPIPSTTMRTMTVT 529
C+K S TF+ MYLSLP+ ST+ T+
Sbjct: 223 LTCHKKSRTFEAFMYLSLPLASTSKCTLQDC 253
|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} Length = 231 | Back alignment and structure |
|---|
| >4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A Length = 217 | Back alignment and structure |
|---|
| >2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} Length = 530 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 912 | ||||
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 5e-43 | |
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 3e-20 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 2e-37 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 1e-18 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 2e-34 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 3e-07 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 9e-20 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 1e-05 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 4e-19 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 3e-09 |
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 157 bits (398), Expect = 5e-43
Identities = 87/190 (45%), Positives = 124/190 (65%), Gaps = 1/190 (0%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLL 396
LTGLRNLGNTC+MNS +QCL + P + DYF + YQ +IN N LG GE+A FG ++
Sbjct: 14 ALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIM 73
Query: 397 RKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLE 456
+ LW ++P+ FK+ + QF+GY+Q DSQE L FL+DGLHEDLN+ + +
Sbjct: 74 KALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYK 133
Query: 457 AKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSL 516
++ + + + AE W+ H+ N+SIIV L QGQ++S + C C+K S TF+ MYLSL
Sbjct: 134 EENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSL 193
Query: 517 PIPSTTMRTM 526
P+ ST+ T+
Sbjct: 194 PLASTSKCTL 203
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 912 | |||
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 100.0 | |
| d2gfoa1 | 348 | Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d2hd5a1 | 336 | Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 100.0 | |
| d1w6va1 | 120 | Ubiquitin carboxyl-terminal hydrolase 15 {Human (H | 99.83 | |
| d1j8ca_ | 103 | Ubiquitin-like N-terminal domain of PLIC-2 {Human | 97.29 | |
| d1yqba1 | 84 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 97.21 | |
| d1wjna_ | 97 | Tubulin-folding protein TbcE {Mouse (Mus musculus) | 97.08 | |
| d1z2ma2 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 96.99 | |
| d1we6a_ | 111 | Splicing factor 3 subunit 1, C-terminal domain {Th | 96.99 | |
| d2c9wb1 | 103 | Elongin B {Human (Homo sapiens) [TaxId: 9606]} | 96.93 | |
| d1wxva1 | 81 | Bag-family molecular chaperone regulator-1 {Human | 96.92 | |
| d2bwfa1 | 73 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.91 | |
| d1v86a_ | 95 | hypothetical D7wsu128e protein {Mouse (Mus musculu | 96.82 | |
| d1wh3a_ | 87 | 2'-5'-oligoadenylate synthetase-like protein, OASL | 96.8 | |
| d1wjua_ | 100 | NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens | 96.79 | |
| d1z2ma1 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 96.68 | |
| d1v5oa_ | 102 | 1700011n24rik protein {Mouse (Mus musculus) [TaxId | 96.68 | |
| d1t0ya_ | 90 | Ubiquitin-like domain of tubulin folding cofactor | 96.68 | |
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 96.67 | |
| d1zkha1 | 86 | Splicing factor 3 subunit 1, C-terminal domain {Hu | 96.62 | |
| d1wgha_ | 116 | Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu | 96.59 | |
| d1wx8a1 | 83 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 96.55 | |
| d1uh6a_ | 100 | Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu | 96.51 | |
| d1wy8a1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 96.46 | |
| d1bt0a_ | 73 | Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI | 96.43 | |
| d2zeqa1 | 78 | Ubiquitin-like domain of parkin {Mouse (Mus muscul | 96.42 | |
| d1wgga_ | 96 | Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M | 96.41 | |
| d1v6ea_ | 95 | Ubiquitin-like domain of tubulin folding cofactor | 96.31 | |
| d1ttna1 | 80 | Dendritic cell-derived ubiquitin-like protein {Hum | 96.28 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 96.28 | |
| d1euvb_ | 79 | SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy | 96.26 | |
| d1v5ta_ | 90 | 8430435i17rik protein {Mouse (Mus musculus) [TaxId | 95.93 | |
| d1uela_ | 95 | Ubiquitin-like domain of Rad23 homolog B (Hhr23B) | 95.91 | |
| d2faza1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 95.91 | |
| d1oqya4 | 77 | Ubiquitin-like domain of Rad23 homolog A (Hhr23a) | 95.9 | |
| d1wiaa_ | 95 | Ubiquitin-like protein bab25500 (2010008E23Rik) {M | 95.76 | |
| d1v2ya_ | 105 | Ubiquitin-like protein 3300001g02rik {Mouse (Mus m | 95.59 | |
| d2uyzb1 | 77 | SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax | 95.21 | |
| d1wx9a1 | 73 | Large proline-rich protein BAT3 {Human (Homo sapie | 94.81 | |
| d1se9a_ | 101 | Hypothetical protein At3g01050 {Thale cress (Arabi | 91.82 | |
| d1h8ca_ | 82 | Fas-associated factor 1, Faf1 {Human (Homo sapiens | 91.79 | |
| d2cr5a1 | 96 | UBX domain-containing protein 6 (Reproduction 8) { | 87.68 | |
| d1wj4a_ | 124 | Hypothetical protein KIAA0794 {Human (Homo sapiens | 87.45 | |
| d1wgda_ | 93 | Homocysteine-responsive endoplasmic reticulum-resi | 86.37 | |
| d1wm3a_ | 72 | SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} | 86.24 |
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=397.22 Aligned_cols=267 Identities=22% Similarity=0.360 Sum_probs=226.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 66533321489962079999999478479999973101223457999981589999999998722899986582999999
Q 002523 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLK 415 (912)
Q Consensus 336 ~~g~~GL~NlGNTCYmNS~LQ~L~~~p~l~~~ll~~~~~~~n~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~ 415 (912)
.+|++||.|+||||||||+||||+++|+|+++++..... .......+..+++.+|..|+.+. .++.|..+...
T Consensus 3 ~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~------~~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~~~~~ 75 (347)
T d1nbfa_ 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE------GDDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS 75 (347)
T ss_dssp SSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCT------TCCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHH
T ss_pred CCCCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHCCCC------CCCCCCHHHHHHHHHHHHHHCCC-CCCCHHHHHHH
T ss_conf 999729863996569999999998479999999707766------88641269999999999986579-97571999976
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
Q ss_conf 96218999988867799999999998998732002688532235789985889899998320378862123544799989
Q 002523 416 LANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495 (912)
Q Consensus 416 l~~~~p~F~~~~QqDA~EfL~~LLd~L~eel~~~~~k~~~~~~d~~~~~d~~~a~e~w~~~~~~n~SiI~~lF~G~~~s~ 495 (912)
++ .+.|..+.|||||||+.+||+.|++++.... ..++|.++|+|.+.++
T Consensus 76 ~~--~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~-----------------------------~~~~i~~lF~g~~~~~ 124 (347)
T d1nbfa_ 76 FG--WETLDSFMQHDVQELCRVLLDNVENKMKGTC-----------------------------VEGTIPKLFRGKMVSY 124 (347)
T ss_dssp TT--CCGGGGGSCBCHHHHHHHHHHHHHHHHTTST-----------------------------TTTHHHHHHCEEEEEE
T ss_pred HC--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------------------CCCCCCCEECEEEEEE
T ss_conf 23--0002067787799999999998888875033-----------------------------3456550113478986
Q ss_pred EECCCCCCEEEEEECCEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 96189998435650642287418999866319999918999977006999178888899999998550789977278888
Q 002523 496 LVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAE 575 (912)
Q Consensus 496 l~C~~C~~~s~~~e~F~~LsLpip~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~dl~~~l~~~~~~~~~~~l~~~e 575 (912)
++|..|++.+.++|+|+.|+|++|..
T Consensus 125 ~~C~~C~~~s~~~e~f~~l~L~i~~~------------------------------------------------------ 150 (347)
T d1nbfa_ 125 IQCKEVDYRSDRREDYYDIQLSIKGK------------------------------------------------------ 150 (347)
T ss_dssp EEESSSCCEEEEEEEESSEEEECTTC------------------------------------------------------
T ss_pred EEECCCCCEEEEECCCCCCCCCCCCC------------------------------------------------------
T ss_conf 78078661422322322331011233------------------------------------------------------
Q ss_pred EECCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCEEEECCCCCCHHH
Q ss_conf 75360255026974324465789918999838999999327786310211112455555505514224897178998668
Q 002523 576 IYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSD 655 (912)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~i~~~~~~~~ 655 (912)
T Consensus 151 -------------------------------------------------------------------------------- 150 (347)
T d1nbfa_ 151 -------------------------------------------------------------------------------- 150 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 99999986187668889999864223778899964224666655789778898778999998996038984499985345
Q 002523 656 IRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIK 735 (912)
Q Consensus 656 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 735 (912)
T Consensus 151 -------------------------------------------------------------------------------- 150 (347)
T d1nbfa_ 151 -------------------------------------------------------------------------------- 150 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 68888867999971999943736585332332200000023333458999965899999985086657998988997766
Q 002523 736 MNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCK 815 (912)
Q Consensus 736 ~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~wyC~~Ck 815 (912)
.++.+||+.++.+|.|.+++.|.|..|
T Consensus 151 ----------------------------------------------------~~~~~~l~~~~~~e~l~~~~~~~~~~~- 177 (347)
T d1nbfa_ 151 ----------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEH- 177 (347)
T ss_dssp ----------------------------------------------------CBHHHHHHHHTCCEEECGGGCEECSTT-
T ss_pred ----------------------------------------------------CCHHHHHHHHCCHHEECCCCCCCCCCC-
T ss_conf ----------------------------------------------------310356776412022414310024567-
Q ss_pred CCCCEEEEEEEECCCCEEEEEEEEEEECC--CEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC
Q ss_conf 66302799994018951599885458707--3001231379568999898864335899999619999999962207996
Q 002523 816 KHWQASKKLDLWRSPDILVIHLKRFSFSR--YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGG 893 (912)
Q Consensus 816 ~~~~AtKk~~lw~lP~iLiIHLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gG 893 (912)
+.+.|.|+..|+++|+||+||||||.|.. ..+.|+++.|.|| +.|||++|+..........|+|+|||.|.|...+|
T Consensus 178 ~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~G 256 (347)
T d1nbfa_ 178 GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGG 256 (347)
T ss_dssp CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEEEETTEE
T ss_pred CCEECCEEEEEEECCCHHEEEEEEEEECCCCCCCCCCCCEEEEE-EEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCC
T ss_conf 63012178999826980047510013422357310157247645-44134653233334576440567999845878799
Q ss_pred EEEEEEEE---CCEEEEE
Q ss_conf 28999981---8928899
Q 002523 894 HYTAFVDV---SCVYSFH 908 (912)
Q Consensus 894 HYtAy~k~---~~~~~f~ 908 (912)
||+||+|+ +.||.||
T Consensus 257 HY~~~~~~~~~~~W~~fn 274 (347)
T d1nbfa_ 257 HYVVYLNPKGDGKWCKFD 274 (347)
T ss_dssp EEEEEECTTSSSCCEEEE
T ss_pred EEEEEEECCCCCEEEEEE
T ss_conf 899806138999899998
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase 15 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} | Back information, alignment and structure |
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| >d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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