Citrus Sinensis ID: 002530

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910--
MKLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLPSDANGDKQSAAASTSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNFNIHDSSRFVKKSNKGVDLIASLCSIYDTSEDDLRKIMEKTNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLMDDSSLSSSLNILEKDYDNATRNKGELDERVFINEDDSLLGSGSLSGGAVNITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFSSGGLSPVHSLHKHETSPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRLLGLNNLKSKPLPPPLQSAFASPTRPNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSEQDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSEVNHNNDGPCPGSPKVSVFPALPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTDINHRLNSNRRVRGTLNFDDVDVDVGLVSDSMVANSLYLQNGSAAASTCAVLKPEQPDP
ccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccEEEEEcccccccccccccccccEEEEEccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccEEEEEcccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccHHHHHHHHHHHHHHccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHHHHHHHHHHcHHHHcccHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHcccccHHHHHHHcccccccHHcccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccEEEEEEEccccccccccccccccEEEEEcHEEHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEccccccEEEEccccccccccccccccEEEEEEccEcccccccHHHHHHHHHHHHccccccEEEEEccccccccccccccccccccccccccccccccccccccccc
MKLNIVDFFKELPQFlvksgpilsniygadweNRLEAKELQANFVHLSILSKSYKRIYRefflpsdangdkqsaaastsgyisdyHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHvpvrfrnfnihdssrfvkksnkgvDLIASLCSIYDTSEDDLRKIMEKTNTLIADILkkkpceasecksenlenidtdGLIYFEnlmddsslsssLNILEKDYdnatrnkgeldervfineddsllgsgslsggavnitgakrkfdslaspvktitsplsphrssashpngiaggatskmvvTPVSTAMTTAKWLRTvicplpskpsaELERFLKSCDKDVTTDVMRRAHIILEaifpssglgercvtgslqganlMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVlertgitafDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRlglladpmpsldAIAThinfssgglspvhslhkhetspgqngdirspkrpctdyRSVLVernnftspvkdrllglnnlkskplppplqsafasptrpnpggggetcaetGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNyrkqpqckpqvfRSVFVDWASarqsgrseqdHVDIITFYNKIFVPAVKPLLvelgpagtamktnrvsevnhnndgpcpgspkvsvfpalpdmspkkvsathnvyvsplrtskmDALIShssksyyacvgesthayqspskdltdinhrlnsnrrvrgtlnfddvdvdVGLVSDSMVANSLylqngsaaastcavlkpeqpdp
MKLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFlpsdangdkQSAAASTSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNfnihdssrfvkksnkgvdLIASLCSIYDTSEDDLRKIMEKTNTLIADILKKkpceasecksenlenidTDGLIYFENLMDDSSLSSSLNILEKDYDNATRNKGELDERVFINEDDSLLGSGSLSGGAVNITGAKRKFDSLASPVKTItsplsphrssashpngiaggatsKMVVTPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILeaifpssglgeRCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFirheeslprelRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFSSGGLSPVHSLHKHetspgqngdirspkrPCTDYRSVLvernnftspvkdRLLGLNNLKSKPLPPPLQSAFASPTRPNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYrkqpqckpqVFRSVFVDWASARqsgrseqdhVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSEVNHNNDGPCPGSPKVSVFPALPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESThayqspskdlTDINHRLnsnrrvrgtlnfdDVDVDVGLVSDSMVANSLYLQNGSAAASTCAVLKPEQPDP
MKLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLPSDANGDKQSAAASTSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNFNIHDSSRFVKKSNKGVDLIASLCSIYDTSEDDLRKIMEKTNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLMddsslssslNILEKDYDNATRNKGELDERVFINEDDsllgsgslsggAVNITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFSSGGLSPVHSLHKHETSPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRllglnnlkskplppplQSAFASPTRPNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSEQDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSEVNHNNDGPCPGSPKVSVFPALPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTDINHRLNSNRRVRGTLNFddvdvdvglvsdsmvANSLYLQNGSAAASTCAVLKPEQPDP
***NIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLP**************SGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNFNIHDSSRFVKKSNKGVDLIASLCSIYDTSEDDLRKIMEKTNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLM*****************************VFI************************************************************MVVTPVSTAMTTAKWLRTVICPL**********************VMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEE********HLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINF***********************************SVLVE********************************************TCAETGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASAR*******DHVDIITFYNKIFVPAVKPLLVELGPA*********************************************VYV*********ALISH*SKSYYACVGES********************NRRVRGTLNFDDVDVDVGLVSDSMVANSLYLQNGSAAA*TC**********
MKLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFF*********************DYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNFNIHDS**F*****KGVDLIASLCSIYDT******KIMEKTNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLMDDSSLSSSLNILEKDYDNATRNKGELDERVFINEDDSL**********************************************************PVSTAMTTAKWLRTVIC***SKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGL*************LMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNS**************************************************************************************************************************TGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVF*******************ITFYNKIFVPAVKPLL*******************************************************************************************************************************************************
MKLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLPSDA***********SGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNFNIHDSSRFVKKSNKGVDLIASLCSIYDTSEDDLRKIMEKTNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLMDDSSLSSSLNILEKDYDNATRNKGELDERVFINEDDSLLGSGSLSGGAVNITGAKRKFDSLASPVKTITS************NGIAGGATSKMVVTPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFSSGGLSPVHS***************SPKRPCTDYRSVLVERNNFTSPVKDRLLGLNNLKSKPLPPPLQSAFA***********ETCAETGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSEQDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSEVNHNNDGPCPGSPKVSVFPALPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTDINHRLNSNRRVRGTLNFDDVDVDVGLVSDSMVANSLYLQNGSAAASTCAVLKPEQPDP
MKLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLPS************TSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNFNIHDSSRFVKKSNKGVDLIASLCSIYDTSEDDLRKIMEKTNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLMDDSSLSSSLNILEKDYDNATRNKGELDERVFINEDD************************************************IAGGATSKMVVTPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVL*A******LLADPMPSLDA**********************************************************************************************ETGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWA***********HVDIITFYNKIFVPAVKPLLVELGPAG*********************SPKVSVFPALPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTDINHRLNSNRRVRGTLNFDDV**************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLPSDANGDKQSAAASTSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNFNIHDSSRFVKKSNKGVDLIASLCSIYDTSEDDLRKIMEKTNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLMDDSSLSSSxxxxxxxxxxxxxxxxxxxxxVFINEDDSLLGSGSLSGGAVNITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFSSGGLSPVHSLHKHETSPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRLLGLNNLKSKPLPPPLQSAFASPTRPNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSEQDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSEVNHNNDGPCPGSPKVSVFPALPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTDINHRLNSNRRVRGTLNFDDVDVDVGLVSDSMVANSLYLQNGSAAASTCAVLKPEQPDP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query912 2.2.26 [Sep-21-2011]
B9SVG91020 Retinoblastoma-related pr N/A no 0.992 0.887 0.842 0.0
B9GLX81035 Retinoblastoma-related pr yes no 0.992 0.874 0.810 0.0
A7P5141007 Retinoblastoma-related pr yes no 0.985 0.892 0.816 0.0
A9UL141025 Retinoblastoma-related pr N/A no 0.991 0.881 0.778 0.0
Q2ABE51025 Retinoblastoma-related pr N/A no 0.994 0.884 0.781 0.0
Q9SLZ41026 Retinoblastoma-related pr N/A no 0.991 0.881 0.782 0.0
Q9LKZ31013 Retinoblastoma-related pr yes no 0.958 0.862 0.762 0.0
Q66WV01003 Retinoblastoma-related pr N/A no 0.976 0.888 0.762 0.0
Q4JF751006 Retinoblastoma-related pr N/A no 0.984 0.892 0.75 0.0
B1ABR61005 Retinoblastoma-related pr N/A no 0.967 0.877 0.744 0.0
>sp|B9SVG9|RBR_RICCO Retinoblastoma-related protein OS=Ricinus communis GN=RBR PE=2 SV=1 Back     alignment and function desciption
 Score = 1566 bits (4055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 768/912 (84%), Positives = 831/912 (91%), Gaps = 7/912 (0%)

Query: 2    KLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREF 61
            KLNIVDFFKELPQ++VK+GPILS +YG DWENRLEAKELQANFVHLSILS+ YKR YRE 
Sbjct: 115  KLNIVDFFKELPQYVVKAGPILSTMYGVDWENRLEAKELQANFVHLSILSRHYKRAYREL 174

Query: 62   FLPSDANGDKQSAAASTSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAIL 121
            FL SDAN DKQSA A    Y+SDYHRFGWLLFLALR+HAFSRFKDLVTCTNGLVS+LAIL
Sbjct: 175  FLTSDANVDKQSATA----YMSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSVLAIL 230

Query: 122  IIHVPVRFRNFNIHDSSRFVKKSNKGVDLIASLCSIYDTSEDDLRKIMEKTNTLIADILK 181
            IIHVPVRFRNFN++DS RFVKK +KGVDL+ASLC+ YDTSED+LRK MEKTN LIADILK
Sbjct: 231  IIHVPVRFRNFNLNDSQRFVKKGDKGVDLLASLCNKYDTSEDELRKTMEKTNNLIADILK 290

Query: 182  KKPCEASECKSENLENIDTDGLIYFENLMDDSSLSSSLNILEKDYDNATRNKGELDERVF 241
            KKP  ASE K+ENL+NI+TDGLIY+E+LM++SSL SSL+ILEKDY++A R KGELDERVF
Sbjct: 291  KKPHMASEYKNENLDNINTDGLIYYEDLMEESSLRSSLDILEKDYEDAIRCKGELDERVF 350

Query: 242  INEDDSLLGSGSLSGGAVNITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATS 301
            INE+DSLLGSGSLSGGA+++TG KRKFD ++SP KTITSPLSPHRS ASH NGI G   S
Sbjct: 351  INEEDSLLGSGSLSGGAISVTGTKRKFDQISSPTKTITSPLSPHRSPASHTNGILGSTNS 410

Query: 302  KMVVTPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFP 361
            +M  TPVSTAMTTAKWLRTVI PLPSKPS +LERFL SCD+DVT DV+RRAHIILEAIFP
Sbjct: 411  RMAATPVSTAMTTAKWLRTVISPLPSKPSPQLERFLASCDRDVTNDVIRRAHIILEAIFP 470

Query: 362  SSGLGERCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLT 421
            S+ LGERCVTGSLQ  NLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQ+LHA NLTSLLT
Sbjct: 471  SNALGERCVTGSLQSTNLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLT 530

Query: 422  NERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELR 481
            NERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELR
Sbjct: 531  NERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELR 590

Query: 482  RHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFS 541
            RHLNSLEERLLESMVWEKGSSMYNSLTVARP LSAEINRLGLLA+PMPSLDAIA HINFS
Sbjct: 591  RHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSAEINRLGLLAEPMPSLDAIAVHINFS 650

Query: 542  SGGLSPVHSLHKHETSPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRLLGLNNLKSK 601
            SGGL P+ S+ KHE SPGQNGDIRSPKRPCTDYRSVLVERN+FTSPVKDRLL   NLKSK
Sbjct: 651  SGGLPPLSSVSKHEISPGQNGDIRSPKRPCTDYRSVLVERNSFTSPVKDRLLAFTNLKSK 710

Query: 602  PLPPPLQSAFASPTRPNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQQ-IR 660
              PPPLQSAFASPTRPNPGGGGETCAETGINIFF KINKLAAVRIN MVERLQ SQQ IR
Sbjct: 711  LPPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKINKLAAVRINGMVERLQQSQQHIR 770

Query: 661  ESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQ 720
            E+VY LFQQ+L+Q+TSLFFNRHIDQIILCCFYGVAKIS++NLTFREIIYNYRKQPQCKPQ
Sbjct: 771  ENVYRLFQQVLSQQTSLFFNRHIDQIILCCFYGVAKISKVNLTFREIIYNYRKQPQCKPQ 830

Query: 721  VFRSVFVDWASARQSGRSEQDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSEVN 780
            VFRSVFVDW+SAR +GR+ QDHVDIITFYN+IF+PA KPLLVE+G AG  +K ++V EVN
Sbjct: 831  VFRSVFVDWSSARHNGRTGQDHVDIITFYNEIFIPAAKPLLVEVGSAGITVKGSQVPEVN 890

Query: 781  HNNDGPCPGSPKVSVFPALPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGE 840
            +N DG CP SPKVS FP+LPDMSPKKVSA HNVYVSPLRTSKMDALISHSSKSYYACVGE
Sbjct: 891  NNKDGQCPASPKVSPFPSLPDMSPKKVSAAHNVYVSPLRTSKMDALISHSSKSYYACVGE 950

Query: 841  STHAYQSPSKDLTDINHRLNSNRRVRGTLNFDDVDVDVGLVSDSMVANSLYLQNGSAAAS 900
            STHAYQSPSKDLT IN+RLN NR +RG+LNFD  DVDVGLVSDSMVA SLYLQNGS A++
Sbjct: 951  STHAYQSPSKDLTAINNRLNGNRNIRGSLNFD--DVDVGLVSDSMVAKSLYLQNGSCAST 1008

Query: 901  TCAVLKPEQPDP 912
            + A LK EQPDP
Sbjct: 1009 SGAPLKTEQPDP 1020
Regulator of biological processes that recruits a histone deacetylase to control gene transcription. May play a role in the entry into mitosis, negatively regulating the cell proliferation. Formation of stable complexes with geminiviridae replication-associated proteins may create a cellular environment which favors viral DNA replication.
Ricinus communis (taxid: 3988)
>sp|B9GLX8|RBR_POPTR Retinoblastoma-related protein OS=Populus trichocarpa GN=RBL901 PE=2 SV=1 Back     alignment and function description
>sp|A7P514|RBR_VITVI Retinoblastoma-related protein OS=Vitis vinifera GN=RBR PE=2 SV=1 Back     alignment and function description
>sp|A9UL14|RBR_MEDSA Retinoblastoma-related protein OS=Medicago sativa GN=RBR PE=2 SV=1 Back     alignment and function description
>sp|Q2ABE5|RBR_CAMSI Retinoblastoma-related protein OS=Camellia sinensis GN=pRB PE=2 SV=1 Back     alignment and function description
>sp|Q9SLZ4|RBR1_PEA Retinoblastoma-related protein 1 OS=Pisum sativum GN=RBR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LKZ3|RBR1_ARATH Retinoblastoma-related protein 1 OS=Arabidopsis thaliana GN=RBR1 PE=1 SV=1 Back     alignment and function description
>sp|Q66WV0|RBR1_NICBE Retinoblastoma-related protein 1 OS=Nicotiana benthamiana GN=RBR1 PE=2 SV=1 Back     alignment and function description
>sp|Q4JF75|RBR_SCUBA Retinoblastoma-related protein OS=Scutellaria baicalensis GN=RB PE=2 SV=1 Back     alignment and function description
>sp|B1ABR6|RBR_HIEPI Retinoblastoma-related protein OS=Hieracium piloselloides GN=RBR PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query912
255578241 1020 conserved hypothetical protein [Ricinus 0.992 0.887 0.842 0.0
449449453 1024 PREDICTED: retinoblastoma-related protei 0.995 0.886 0.795 0.0
224053236 1035 hypothetical protein POPTRDRAFT_547794 [ 0.992 0.874 0.810 0.0
449487265 1125 PREDICTED: retinoblastoma-related protei 0.995 0.807 0.794 0.0
7381060 1035 retinoblastoma-related protein 1 [Populu 0.992 0.874 0.809 0.0
3565567781002 PREDICTED: retinoblastoma-related protei 0.985 0.897 0.814 0.0
2960817901006 unnamed protein product [Vitis vinifera] 0.985 0.893 0.816 0.0
3594760051007 PREDICTED: retinoblastoma-related protei 0.985 0.892 0.816 0.0
357515345 1052 Retinoblastoma-related protein [Medicago 0.989 0.857 0.783 0.0
254789787 1025 RecName: Full=Retinoblastoma-related pro 0.991 0.881 0.778 0.0
>gi|255578241|ref|XP_002529988.1| conserved hypothetical protein [Ricinus communis] gi|254789790|sp|B9SVG9.1|RBR_RICCO RecName: Full=Retinoblastoma-related protein gi|223530511|gb|EEF32393.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1566 bits (4055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 768/912 (84%), Positives = 831/912 (91%), Gaps = 7/912 (0%)

Query: 2    KLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREF 61
            KLNIVDFFKELPQ++VK+GPILS +YG DWENRLEAKELQANFVHLSILS+ YKR YRE 
Sbjct: 115  KLNIVDFFKELPQYVVKAGPILSTMYGVDWENRLEAKELQANFVHLSILSRHYKRAYREL 174

Query: 62   FLPSDANGDKQSAAASTSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAIL 121
            FL SDAN DKQSA A    Y+SDYHRFGWLLFLALR+HAFSRFKDLVTCTNGLVS+LAIL
Sbjct: 175  FLTSDANVDKQSATA----YMSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSVLAIL 230

Query: 122  IIHVPVRFRNFNIHDSSRFVKKSNKGVDLIASLCSIYDTSEDDLRKIMEKTNTLIADILK 181
            IIHVPVRFRNFN++DS RFVKK +KGVDL+ASLC+ YDTSED+LRK MEKTN LIADILK
Sbjct: 231  IIHVPVRFRNFNLNDSQRFVKKGDKGVDLLASLCNKYDTSEDELRKTMEKTNNLIADILK 290

Query: 182  KKPCEASECKSENLENIDTDGLIYFENLMDDSSLSSSLNILEKDYDNATRNKGELDERVF 241
            KKP  ASE K+ENL+NI+TDGLIY+E+LM++SSL SSL+ILEKDY++A R KGELDERVF
Sbjct: 291  KKPHMASEYKNENLDNINTDGLIYYEDLMEESSLRSSLDILEKDYEDAIRCKGELDERVF 350

Query: 242  INEDDSLLGSGSLSGGAVNITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATS 301
            INE+DSLLGSGSLSGGA+++TG KRKFD ++SP KTITSPLSPHRS ASH NGI G   S
Sbjct: 351  INEEDSLLGSGSLSGGAISVTGTKRKFDQISSPTKTITSPLSPHRSPASHTNGILGSTNS 410

Query: 302  KMVVTPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFP 361
            +M  TPVSTAMTTAKWLRTVI PLPSKPS +LERFL SCD+DVT DV+RRAHIILEAIFP
Sbjct: 411  RMAATPVSTAMTTAKWLRTVISPLPSKPSPQLERFLASCDRDVTNDVIRRAHIILEAIFP 470

Query: 362  SSGLGERCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLT 421
            S+ LGERCVTGSLQ  NLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQ+LHA NLTSLLT
Sbjct: 471  SNALGERCVTGSLQSTNLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLT 530

Query: 422  NERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELR 481
            NERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELR
Sbjct: 531  NERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELR 590

Query: 482  RHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFS 541
            RHLNSLEERLLESMVWEKGSSMYNSLTVARP LSAEINRLGLLA+PMPSLDAIA HINFS
Sbjct: 591  RHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSAEINRLGLLAEPMPSLDAIAVHINFS 650

Query: 542  SGGLSPVHSLHKHETSPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRLLGLNNLKSK 601
            SGGL P+ S+ KHE SPGQNGDIRSPKRPCTDYRSVLVERN+FTSPVKDRLL   NLKSK
Sbjct: 651  SGGLPPLSSVSKHEISPGQNGDIRSPKRPCTDYRSVLVERNSFTSPVKDRLLAFTNLKSK 710

Query: 602  PLPPPLQSAFASPTRPNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQQ-IR 660
              PPPLQSAFASPTRPNPGGGGETCAETGINIFF KINKLAAVRIN MVERLQ SQQ IR
Sbjct: 711  LPPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKINKLAAVRINGMVERLQQSQQHIR 770

Query: 661  ESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQ 720
            E+VY LFQQ+L+Q+TSLFFNRHIDQIILCCFYGVAKIS++NLTFREIIYNYRKQPQCKPQ
Sbjct: 771  ENVYRLFQQVLSQQTSLFFNRHIDQIILCCFYGVAKISKVNLTFREIIYNYRKQPQCKPQ 830

Query: 721  VFRSVFVDWASARQSGRSEQDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSEVN 780
            VFRSVFVDW+SAR +GR+ QDHVDIITFYN+IF+PA KPLLVE+G AG  +K ++V EVN
Sbjct: 831  VFRSVFVDWSSARHNGRTGQDHVDIITFYNEIFIPAAKPLLVEVGSAGITVKGSQVPEVN 890

Query: 781  HNNDGPCPGSPKVSVFPALPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGE 840
            +N DG CP SPKVS FP+LPDMSPKKVSA HNVYVSPLRTSKMDALISHSSKSYYACVGE
Sbjct: 891  NNKDGQCPASPKVSPFPSLPDMSPKKVSAAHNVYVSPLRTSKMDALISHSSKSYYACVGE 950

Query: 841  STHAYQSPSKDLTDINHRLNSNRRVRGTLNFDDVDVDVGLVSDSMVANSLYLQNGSAAAS 900
            STHAYQSPSKDLT IN+RLN NR +RG+LNFD  DVDVGLVSDSMVA SLYLQNGS A++
Sbjct: 951  STHAYQSPSKDLTAINNRLNGNRNIRGSLNFD--DVDVGLVSDSMVAKSLYLQNGSCAST 1008

Query: 901  TCAVLKPEQPDP 912
            + A LK EQPDP
Sbjct: 1009 SGAPLKTEQPDP 1020

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449449453|ref|XP_004142479.1| PREDICTED: retinoblastoma-related protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224053236|ref|XP_002297730.1| hypothetical protein POPTRDRAFT_547794 [Populus trichocarpa] gi|254789789|sp|B9GLX8.1|RBR_POPTR RecName: Full=Retinoblastoma-related protein gi|222844988|gb|EEE82535.1| hypothetical protein POPTRDRAFT_547794 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449487265|ref|XP_004157544.1| PREDICTED: retinoblastoma-related protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|7381060|gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|356556778|ref|XP_003546699.1| PREDICTED: retinoblastoma-related protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|296081790|emb|CBI20795.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359476005|ref|XP_002280874.2| PREDICTED: retinoblastoma-related protein-like [Vitis vinifera] gi|254789791|sp|A7P514.1|RBR_VITVI RecName: Full=Retinoblastoma-related protein gi|359392418|gb|AEV45768.1| RBR protein [Vitis pseudoreticulata] Back     alignment and taxonomy information
>gi|357515345|ref|XP_003627961.1| Retinoblastoma-related protein [Medicago truncatula] gi|355521983|gb|AET02437.1| Retinoblastoma-related protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|254789787|sp|A9UL14.1|RBR_MEDSA RecName: Full=Retinoblastoma-related protein; Short=MsRBR gi|62956049|gb|AAY23367.1| retinoblastoma-related protein [Medicago sativa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query912
UNIPROTKB|Q66WV01003 RBR1 "Retinoblastoma-related p 0.976 0.888 0.723 0.0
TAIR|locus:20821941013 RBR1 "retinoblastoma-related 1 0.981 0.883 0.720 0.0
UNIPROTKB|A5D7M0 1140 RBL2 "Uncharacterized protein" 0.486 0.389 0.263 3.3e-45
UNIPROTKB|E1BQ591064 RBL1 "Uncharacterized protein" 0.513 0.439 0.254 3.5e-45
UNIPROTKB|H9KZ75981 RBL2 "Uncharacterized protein" 0.496 0.461 0.260 2.9e-44
UNIPROTKB|Q08999 1139 RBL2 "Retinoblastoma-like prot 0.482 0.386 0.261 4.2e-43
ZFIN|ZDB-GENE-030131-81791058 rbl1 "retinoblastoma-like 1 (p 0.301 0.259 0.319 4.3e-43
RGD|15955111063 Rbl1 "retinoblastoma-like 1 (p 0.520 0.446 0.253 3.4e-42
UNIPROTKB|E2RIG3 1139 RBL2 "Uncharacterized protein" 0.481 0.385 0.261 4e-42
MGI|MGI:1033001063 Rbl1 "retinoblastoma-like 1 (p 0.521 0.447 0.246 8.2e-42
UNIPROTKB|Q66WV0 RBR1 "Retinoblastoma-related protein 1" [Nicotiana benthamiana (taxid:4100)] Back     alignment and assigned GO terms
 Score = 3295 (1165.0 bits), Expect = 0., P = 0.
 Identities = 661/913 (72%), Positives = 737/913 (80%)

Query:     2 KLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREF 61
             KLN+VDFFKELPQF++K GP LSN+YG+DWE RLE KELQ NFVHLS+LSK YKR Y+E 
Sbjct:   109 KLNVVDFFKELPQFILKVGPTLSNLYGSDWEKRLEVKELQTNFVHLSLLSKYYKRAYQEL 168

Query:    62 FLPSDANGDKQSAAASTSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAIL 121
             FL S  N DK SA ++++ ++  Y+RFGWLLFL+LRIH FSRFKDLVTCTNGLVS+LAIL
Sbjct:   169 FLASGNNEDKPSATSNSAIHLPQYYRFGWLLFLSLRIHVFSRFKDLVTCTNGLVSVLAIL 228

Query:   122 IIHVPVRFRNFNIHDSSRFVKKSNKGVDLIASLCSIYDTSEDDLRKIMEKTNTLIADILK 181
             +IHVPVRFRNFNI DSSRFVKK +K VDL+ASL  IY TS DDLR+ M+K N LI + LK
Sbjct:   229 MIHVPVRFRNFNIDDSSRFVKKGDK-VDLLASLSKIYQTSIDDLRETMDKVNNLITEKLK 287

Query:   182 KKPCEASECKSENLENIDTDGLIYFENLMXXXXXXXXXNILEKDYDNATRNKGELDERVF 241
             KKPC ASE ++ENL+N+DTDGL YFE+LM         + LEKDY +A +NKGELDER+F
Sbjct:   288 KKPCLASEFRTENLDNLDTDGLTYFEDLMEESCLSSSVSTLEKDYSDAIQNKGELDERIF 347

Query:   242 INEDDXXXXXXXXXXXAVNITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATS 301
             +NE+D           AVN+ G KRKFD++ASP KT+TS LSP+RS    PN     A S
Sbjct:   348 VNEEDSLLGSGSLSGGAVNMNGTKRKFDAMASPAKTVTSTLSPYRS----PNC----ANS 399

Query:   302 KMVV-TPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIF 360
             KM   TPVSTAMTTA+WLRTVI PL  KPSAELERFL SCD+DVT DV+RRA IILEAIF
Sbjct:   400 KMTAATPVSTAMTTARWLRTVIAPLQPKPSAELERFLSSCDRDVTADVIRRAQIILEAIF 459

Query:   361 PSSGLGERCVTG-SLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSL 419
             PSSG  E C  G SLQ  +LMDNIWAEQRR EALKLYYRVL+ MCTAE+Q+L+  NLTSL
Sbjct:   460 PSSGPAEHCAAGGSLQSTSLMDNIWAEQRRSEALKLYYRVLQTMCTAESQILNGNNLTSL 519

Query:   420 LTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRE 479
             LTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRE
Sbjct:   520 LTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRE 579

Query:   480 LRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHIN 539
             LRRHLNSLEERLLESMVWEKGSSMYNSL VA+P L+AEINR+GLLA+PMPSLDAIA HIN
Sbjct:   580 LRRHLNSLEERLLESMVWEKGSSMYNSLAVAKPSLAAEINRMGLLAEPMPSLDAIAMHIN 639

Query:   540 FSSGGLSPVHSLHKHETSP-GQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRXXXXXXX 598
              SSG L P+ SLHK+  +P GQ GDIRSPK+ C++YRSVLVERN+FTSPVKDR       
Sbjct:   640 LSSGSLPPLPSLHKNNLAPNGQIGDIRSPKKVCSEYRSVLVERNSFTSPVKDRFLALNNI 699

Query:   599 XXXXXXXXXQSAFASPTRPNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQQ 658
                       SAFASPTRPNPGGGGETCAET IN+FF KI KLAAVRIN M+ERLQLSQQ
Sbjct:   700 KSKFPPPALHSAFASPTRPNPGGGGETCAETAINVFFGKIVKLAAVRINGMIERLQLSQQ 759

Query:   659 IRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCK 718
             IRE+VYCLFQ+IL+QRTSLFFNRHIDQIILC FYGVAKISQLNLTF+EII NYRKQPQCK
Sbjct:   760 IRETVYCLFQKILSQRTSLFFNRHIDQIILCSFYGVAKISQLNLTFKEIICNYRKQPQCK 819

Query:   719 PQVFRSVFVDWASARQSGRSEQDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSE 778
             PQVFRSVFVDW  AR + R+  DHVDIITFYN++F+P+VKPLLVEL PAG     N  SE
Sbjct:   820 PQVFRSVFVDWTLARHNVRTGADHVDIITFYNEMFIPSVKPLLVELAPAGN----N--SE 873

Query:   779 VNHNNDGPCPGSPKVSVFPALPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACV 838
              N +NDG  P SPK S FP LPDMSPKKVSA HNVYVSPLR SKMDALISHSSKSYYACV
Sbjct:   874 KNDHNDGQGPASPKPSPFPKLPDMSPKKVSAVHNVYVSPLRASKMDALISHSSKSYYACV 933

Query:   839 GESTHAYQSPSKDLTDINHRLNSNRRVRGTLNFXXXXXXXXXXXXXXXANSLYLQNGSAA 898
             GESTHAYQSPSKDL  IN+RLN NR++RG LNF               ANSLYLQNG+  
Sbjct:   934 GESTHAYQSPSKDLDVINNRLNGNRKLRGALNFDVDAGLVSDSIV---ANSLYLQNGNCR 990

Query:   899 ASTCAVLKPEQPD 911
              S  A +K EQP+
Sbjct:   991 -SPVAHVKTEQPE 1002
GO:0032875 "regulation of DNA endoreduplication" evidence=IMP
GO:0051782 "negative regulation of cell division" evidence=IMP
TAIR|locus:2082194 RBR1 "retinoblastoma-related 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7M0 RBL2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQ59 RBL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|H9KZ75 RBL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q08999 RBL2 "Retinoblastoma-like protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8179 rbl1 "retinoblastoma-like 1 (p107)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1595511 Rbl1 "retinoblastoma-like 1 (p107)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RIG3 RBL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:103300 Rbl1 "retinoblastoma-like 1 (p107)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4JF75RBR_SCUBANo assigned EC number0.750.98460.8926N/Ano
B9GLX8RBR_POPTRNo assigned EC number0.81050.99230.8743yesno
A9UL14RBR_MEDSANo assigned EC number0.77880.99120.8819N/Ano
A9UL13RBR1_WHEATNo assigned EC number0.64670.96920.9237N/Ano
Q9SXN6RBR1_TOBACNo assigned EC number0.72940.93200.8844N/Ano
Q9LKZ3RBR1_ARATHNo assigned EC number0.76290.95830.8627yesno
Q3LXA7RBR3_MAIZENo assigned EC number0.64480.97580.8811N/Ano
A7P514RBR_VITVINo assigned EC number0.81660.98570.8927yesno
B1ABS0RBR_HIEPLNo assigned EC number0.73940.96050.8690N/Ano
B9SVG9RBR_RICCONo assigned EC number0.84210.99230.8872N/Ano
Q66WV0RBR1_NICBENo assigned EC number0.76230.97690.8883N/Ano
Q84QM3RBR1_ORYSJNo assigned EC number0.67240.96920.8752yesno
Q9SLZ4RBR1_PEANo assigned EC number0.78290.99120.8810N/Ano
Q2ABE5RBR_CAMSINo assigned EC number0.78150.99450.8848N/Ano
Q8H0J6RBR2_MAIZENo assigned EC number0.52160.90890.9572N/Ano
Q9LKX9RBR1_MAIZENo assigned EC number0.52840.91770.9653N/Ano
B1ABR6RBR_HIEPINo assigned EC number0.74440.96710.8776N/Ano
A2YXJ7RBR1_ORYSINo assigned EC number0.67240.96920.8752N/Ano
O82677RBR_CHERUNo assigned EC number0.72150.98790.8903N/Ano
Q8H252RBR_COCNUNo assigned EC number0.70990.98020.8842N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
RBL901
SubName- Full=Putative uncharacterized protein;; Regulator of biological processes that recruits a histone deacetylase to control gene transcription. May play a role in the entry into mitosis, negatively regulating the cell proliferation. Formation of stable complexes with geminiviridae replication-associated proteins may create a cellular environment which favors viral DNA replication (By similarity) (965 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.II.1126.1
tetrahydrofolate dehydrogenase/cyclohydrolase (EC-6.3.4.3) (290 aa)
      • 0.700
CDKD
hypothetical protein (416 aa)
     •• 0.687
PGE901
polycomb group protein (371 aa)
    • • 0.561
E2Fc
transcription factor E2F (476 aa)
    • • 0.547
fgenesh4_pg.C_LG_III000666
SubName- Full=D5-type cyclin; (337 aa)
    • • 0.534
fgenesh4_pg.C_LG_II001094
SubName- Full=D5-type cyclin; (326 aa)
    • • 0.515
eugene3.00140087
SubName- Full=D5-type cyclin; (260 aa)
      • 0.510
estExt_Genewise1_v1.C_LG_IX3930
proliferating cell nuclear antigen (PCNA); This protein is an auxiliary protein of DNA polymera [...] (265 aa)
      • 0.510
estExt_Genewise1_v1.C_LG_I1046
proliferating cell nuclear antigen (PCNA); This protein is an auxiliary protein of DNA polymera [...] (268 aa)
      • 0.510
CYCB1-2
cyclin b (417 aa)
      • 0.502

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query912
pfam01858192 pfam01858, RB_A, Retinoblastoma-associated protein 4e-85
pfam01857130 pfam01857, RB_B, Retinoblastoma-associated protein 6e-61
pfam11934138 pfam11934, DUF3452, Domain of unknown function (DU 8e-43
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 0.004
>gnl|CDD|202014 pfam01858, RB_A, Retinoblastoma-associated protein A domain Back     alignment and domain information 
 Score =  270 bits (692), Expect = 4e-85
 Identities = 95/202 (47%), Positives = 124/202 (61%), Gaps = 10/202 (4%)

Query: 306 TPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGL 365
           TPV TAM T   LR V+  L   PS  L ++L SCD++ T  +++R  II E IF +   
Sbjct: 1   TPVRTAMNTVSQLREVLSSLSDAPSETLLQYLNSCDRNPTEAIIKRVKIIGEEIFETFAE 60

Query: 366 GERCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERF 425
            E                 A QR   ALKLYYRVLE++  AE + LH  +L++LL  E F
Sbjct: 61  AEDQS----------PKEIASQRFKLALKLYYRVLESILKAEEKRLHDMDLSNLLEQEAF 110

Query: 426 HRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLN 485
           HR +LAC  ELVLAT+KT  + FP +LE  GITAFD  KVIESFIRHE  L RE+ +HLN
Sbjct: 111 HRSLLACCLELVLATYKTTDLSFPWILEVFGITAFDFYKVIESFIRHEGGLSREMVKHLN 170

Query: 486 SLEERLLESMVWEKGSSMYNSL 507
           S+EE++LES+ W+  S ++  +
Sbjct: 171 SIEEQILESLAWKSDSPLWEMI 192

This domain has the cyclin fold as predicted. Length = 192
>gnl|CDD|216744 pfam01857, RB_B, Retinoblastoma-associated protein B domain Back     alignment and domain information
>gnl|CDD|221325 pfam11934, DUF3452, Domain of unknown function (DUF3452) Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 912
KOG1010920 consensus Rb (Retinoblastoma tumor suppressor)-rel 100.0
PF01858194 RB_A: Retinoblastoma-associated protein A domain; 100.0
PF01857135 RB_B: Retinoblastoma-associated protein B domain; 100.0
PF11934136 DUF3452: Domain of unknown function (DUF3452); Int 99.97
PF08934155 Rb_C: Rb C-terminal domain; InterPro: IPR015030 Th 99.76
PRK00423310 tfb transcription initiation factor IIB; Reviewed 97.13
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 97.07
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 95.93
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 95.55
KOG1597308 consensus Transcription initiation factor TFIIB [T 94.91
PRK00423310 tfb transcription initiation factor IIB; Reviewed 93.83
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 88.64
>KOG1010 consensus Rb (Retinoblastoma tumor suppressor)-related protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1e-180  Score=1548.57  Aligned_cols=776  Identities=34%  Similarity=0.507  Sum_probs=636.1

Q ss_pred             CCccHHHHhHhhHHHHHhhcCcccccCChhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccc---
Q 002530            1 MKLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLPSDANGDKQSAAAS---   77 (912)
Q Consensus         1 ~~lsl~~Ff~km~~w~~~~~~~l~~~~~~~~~~rl~~~~Le~~F~v~~vl~kky~~iF~~iF~~p~~~~~~~~~~~~---   77 (912)
                      ||||++|||+||+||++|+     + .+++|  |++++|||+||+|+++|||||++||.+||+.|.++++..++.++   
T Consensus       112 ~k~sv~eff~km~~w~~ma-----~-s~~~f--~~~ieel~~~f~vssvl~KkY~~iF~~iF~~p~~e~~~~~~~~n~~~  183 (920)
T KOG1010|consen  112 FKMSVIEFFTKMKQWVDMA-----N-SPQEF--REEIEELQRNFKVSSVLFKKYKRIFRDIFKLPREELGYLNRPSNHAR  183 (920)
T ss_pred             HHHHHHHHHHHHHHHHHHh-----c-CHHHH--HHHHHHHHhccceehhHHHHHHHHHHHHHhCcccccccCCCcccccC
Confidence            5899999999999999998     4 48855  66699999999999999999999999999999976665555444   


Q ss_pred             CCCChhhHHhHHHHHHHHHHhhhccccchHHHHhhHHHHHHHHHHhccCccc----cccccCCC-cccc----cccCCcc
Q 002530           78 TSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRF----RNFNIHDS-SRFV----KKSNKGV  148 (912)
Q Consensus        78 ~~~~~~d~~~f~W~LFl~~k~~~~~~f~DLV~s~~LLlc~ldll~~n~p~~~----~n~~~~~~-~~~~----k~~~~~~  148 (912)
                      ++|++.++|+|||+|||++|+++++++||||+||||||||||++|+|++.+.    .||+|+|. .++.    +.+..++
T Consensus       184 ~~~~~~~l~~f~W~lFL~~Kn~~~~~~dDLV~syqlllc~LDlv~~n~lc~~R~~~v~p~f~gl~~n~~~~d~~~s~n~~  263 (920)
T KOG1010|consen  184 TPCSYAELFKFCWLLFLVAKNEFPSIEDDLVNSYQLLLCILDLVYKNLLCSPRKDLVNPSFKGLPKNWTARDFKPSENPP  263 (920)
T ss_pred             CcccHHHHHHHHHHHHHHHhcccchhhhhHHhhhhHHHHHHHHHHHHhccccccccccccccCCCCCCchhhccccCCCc
Confidence            7999999999999999999999999999999999999999999999966654    47888873 4443    4557889


Q ss_pred             hhHHHhhhhcCCCHHHHHHHHHH-hHHHHHHHhccCcccccccccccCCCCCCCcccccccCCCCCchHHHHHHHHHHHH
Q 002530          149 DLIASLCSIYDTSEDDLRKIMEK-TNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLMDDSSLSSSLNILEKDYD  227 (912)
Q Consensus       149 ~il~~LC~~~~~~~~e~k~~~~~-~~~~I~~~f~k~~l~~~~~~~~~l~~~~~~~~~~~~gLl~~~~f~~nl~~Lnk~YE  227 (912)
                      |||+.||++|+++.+|||+|+++ |++++..+|..+.+.   |+..+           ++||++.++|..|+++|||.||
T Consensus       264 cii~~lce~h~~li~eak~~k~~~fk~~~~~l~~~ktl~---g~~~~-----------~~gll~~~~f~~~~~~lnk~ye  329 (920)
T KOG1010|consen  264 CIIEVLCELHEGLIDEAKNMKETNFKPFMSSLYEVKTLK---GDYLL-----------MRGLLDEGNFLPNVKNLNKSYE  329 (920)
T ss_pred             chhHHhhhhhhhHHHhhcchHHHhHHHHHHHHHhhhhhh---ccccc-----------ccccccccccchhHHHHhhhHH
Confidence            99999999999999999999999 599999999887652   22222           5899999999999999999999


Q ss_pred             HHhccCCCCcccccccCCCccccCCCCCCC--cccc-ccccccccccCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002530          228 NATRNKGELDERVFINEDDSLLGSGSLSGG--AVNI-TGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMV  304 (912)
Q Consensus       228 ~~vl~~GdlDERiFL~~d~~~ig~~~~s~~--~~~~-~~~~~~~~~~~sp~~~~~~plt~~~sp~s~~~g~~~~~~~~~~  304 (912)
                      +||+++|||||||||+.|+++.+..+.++-  ..++ +.+.+++.+..| .            .+++..|++|.++.+..
T Consensus       330 eyvl~vgelDeRifl~~Da~~~t~~~~s~~~~r~~~~~~~~~~~~~~~s-~------------~~p~~~~~~y~~e~~~~  396 (920)
T KOG1010|consen  330 EYVLDVGELDERIFLGEDAEEETKSSDSFESERLAVKSSLAQEFLKTQS-K------------KSPPHTGVRYNLELGNY  396 (920)
T ss_pred             HHhccccchhhhhhcccchhhhhccCCccchhccccccccchhhccccc-c------------cCCCCcccccccccccC
Confidence            999999999999999999887763221111  1111 222333332222 1            12345599999999999


Q ss_pred             CchhhhHHhHHHHHHHHhCCCCCCCcHHHHHHHhhcCCChHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCcccchHH
Q 002530          305 VTPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIW  384 (912)
Q Consensus       305 ~TPVs~Am~s~~~L~~~l~~l~~~PS~~L~~~f~~C~~d~~~~i~~rv~~i~e~~f~~~~~~~~~~~~~~~~~~~~d~~~  384 (912)
                      .|||++||++++||++++.|+..+||++|++||++|++||+++|++|+++|++.|+++...+..+     + ...++  +
T Consensus       397 ~tPvsta~~sik~l~t~i~g~~~~psdkLe~~~~tc~r~p~e~Il~r~~~i~e~~~q~f~~~~~~-----g-~~~~e--~  468 (920)
T KOG1010|consen  397 PTPVSTATNSIKQLMTILNGLKKEPSDKLEQYLNTCSRDPTESILKRLKEIFEIFEQKFSAAEGS-----G-NSCIE--I  468 (920)
T ss_pred             CCcchhHHHHHHHHHHHHhccccCCcHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHhhhhccC-----C-ccchH--H
Confidence            99999999999999999999999999999999999999999999999999999998876533311     1 23455  7


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHhhhchhHHHHHHHHHHHHHHHhhccCCccchhHHhhhcCCCcchhhh
Q 002530          385 AEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSK  464 (912)
Q Consensus       385 a~qR~~~a~~LYYrvLE~Il~~E~~rl~~~dls~LL~~d~FhrsLlACclEiVl~ty~~~~~~FPwILe~~~i~afdf~K  464 (912)
                      +.||+++|++|||||||+||++|.+|++..||+.||+|++||+||||||+|+||++|++ ++.|||||++|||+||||||
T Consensus       469 ~~~r~k~a~~LYykvLE~il~aE~~rl~~~dl~~LL~q~~Fh~sLlACclElVL~ty~~-~l~FPwvle~~~l~aFdF~K  547 (920)
T KOG1010|consen  469 ASQRFKLAERLYYKVLEKILKAELKRLPDMDLSKLLEQEIFHRSLLACCLELVLATYKT-DLSFPWVLECFGLKAFDFYK  547 (920)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCchhhhhcCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999997 59999999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhhcCCCCchhHHHhhhccchhhhhhhcCCCCCCCCchhhhhhccccCCCC
Q 002530          465 VIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFSSGG  544 (912)
Q Consensus       465 VIE~fIR~e~~LpRelvkHLn~IEE~ILEslAW~~~S~Lw~~L~~~~~~~~~e~~~~~~~~e~~p~~~~i~~~~~~~~~~  544 (912)
                      |||+|||||++|+||||||||+|||+|||||||++|||||++|++++       +|++++.+++|+.+ .+...   ..|
T Consensus       548 VIE~~IRhE~~L~RemiKHLn~iEE~iLEslaW~~dS~Lw~~i~~~~-------~~~~~~~~~~~~~~-le~~~---~~~  616 (920)
T KOG1010|consen  548 VIESFIRHEGGLSREMIKHLNSIEERILESLAWKSDSPLWEMIKQAK-------PRLPTEEGVDPPDN-LESAC---IAG  616 (920)
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHhcc-------cccccccccccccc-ccccc---ccc
Confidence            99999999999999999999999999999999999999999999887       45666666666654 21100   011


Q ss_pred             CCCcccCCcCCC----CCCCCCCCCCCCCCCcCccccccccccccCcccccccccCCCCCCCCCCCcccccCCCCCCCCC
Q 002530          545 LSPVHSLHKHET----SPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRLLGLNNLKSKPLPPPLQSAFASPTRPNPG  620 (912)
Q Consensus       545 ~p~~p~~~~~~~----~~~~~~~~~sp~~~~~~~~s~~~~~~~~~sP~k~~l~~~~~~~~k~~p~~~~s~~~sp~~~~~~  620 (912)
                        -.|.+.++.+    +|++     .|++.            +.++|++++..                   .++..++.
T Consensus       617 --~~p~~~~~~~~~~~sp~~-----~Pk~~------------~~t~pv~~~an-------------------~~qe~~~~  658 (920)
T KOG1010|consen  617 --LLPLRVNHVRARYSSPVL-----EPKDK------------GTTIPVNGTAN-------------------AGQEVTAF  658 (920)
T ss_pred             --cCCccccccccccCCCCC-----Ccccc------------ccccccccccc-------------------ccccCCcc
Confidence              1222222111    1111     12221            12334444321                   22445556


Q ss_pred             CCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHhHhhccC
Q 002530          621 GGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQL  700 (912)
Q Consensus       621 ~~~e~~~~t~l~lFfrKvy~LAa~RL~~LC~~L~l~~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~i~Kv~k~  700 (912)
                      +++.++++|+|+|||||||+|||+||++||+||+++++++++|||||||+|+|+|+||+||||||||||||||||||+++
T Consensus       659 ~~~~~~~stsLsIF~rKvY~LAavRL~~Lc~rL~l~~e~r~~IWtlFehsl~~et~Lm~dRHLDQillCaiy~i~KV~~~  738 (920)
T KOG1010|consen  659 GVNKPRKSTSLSIFLRKVYHLAAVRLNDLCERLSLSDELREQIWTLFEHSLTNETELMRDRHLDQILLCAIYGIAKVKKE  738 (920)
T ss_pred             cCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccHHHHHhhhHHHHHHHHHHhheehhcc
Confidence            67788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHhcCCCCCCceeEEEEecccccccCCCcc--cccccccchhhhccHhhhHHHHHHhcCCCCcCccCcccc
Q 002530          701 NLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSE--QDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSE  778 (912)
Q Consensus       701 ~~tFk~Ii~~Yr~QPqa~~~VyRsVli~~~~~~~~g~~~--~e~gDII~FYN~VFvp~mK~f~l~~~~~~~~~~~~~~~~  778 (912)
                      ++||++||++||+||||.++|||+|+|+....++.|..|  ++++|||+|||.||||.||+|+++|....+         
T Consensus       739 ~ltF~eIm~~YR~QPqa~~~vyRsV~i~~~~~~~~~~~~P~~~~~diI~fyN~iyV~~~k~~~i~~~~~~~---------  809 (920)
T KOG1010|consen  739 DLTFSEIMRAYRRQPQAVSLVYRSVLIKDKTNRDQGPSGPKEERSDIITFYNNIYVPPMKTFAIEYGLATT---------  809 (920)
T ss_pred             cchHHHHHHHHhcCchhhhhhhhheeecccccccccCCCCcccccceeccccceehhhhhhhhhhhccCCC---------
Confidence            999999999999999999999999999832222233222  489999999999999999999999998621         


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCC--CCCCcccccCCcEEEecCCCCCcccccCCCCceEEEEeccccccCCCCCccHHHHH
Q 002530          779 VNHNNDGPCPGSPKVSVFPALP--DMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTDIN  856 (912)
Q Consensus       779 ~~~~~d~~~~~sP~lSp~p~l~--~~sP~rvs~~hnvyvSPlk~~k~~~~lsp~s~~~y~~~ges~~~~~SPskdL~~IN  856 (912)
                               ++.++++|.|++.  ..+|+++|++||||||||+++  +.+++++++.||+|        .||||+|++||
T Consensus       810 ---------~~~~~lsp~~~i~~~~~e~~~~S~~h~v~is~~~~~--~~l~s~s~~~y~~~--------~spsk~L~ain  870 (920)
T KOG1010|consen  810 ---------MDAKPLSPSPSIKVSIGEPRRLSQRHNVYISPHKNS--DRLQSRSTAEYYFC--------NSPSKDLPAIN  870 (920)
T ss_pred             ---------CCCCCCCCCccccccCCCCcchhhhcceeecCCCch--hhhcCcchhhcccc--------CCCCcchHHHH
Confidence                     3456777777765  458899999999999999887  34444444555555        37999999999


Q ss_pred             HHhhcCCCcccceecCCCcccccccchhhhhhhccc------cCCCCCcCCC
Q 002530          857 HRLNSNRRVRGTLNFDDVDVDVGLVSDSMVANSLYL------QNGSAAASTC  902 (912)
Q Consensus       857 ~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  902 (912)
                      +||+++....+..++.+   |  .++++.+||.+-.      |+++.+++++
T Consensus       871 ~~i~~ss~~~~~~~~~~---e--s~~Es~~ani~~~~~~~~~~r~~D~~~~~  917 (920)
T KOG1010|consen  871 NLIRGSSERTKKKHIPG---E--SKSESKRANILQERTRMQLQRLQDAMSTR  917 (920)
T ss_pred             HHhhcCcccccccCCCc---c--chhhhhHhhhhhhhhHHHHhhhhhhhhcc
Confidence            99998433333444554   2  8999999998865      5666666553

>PF01858 RB_A: Retinoblastoma-associated protein A domain; InterPro: IPR002720 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation Back     alignment and domain information
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation Back     alignment and domain information
>PF11934 DUF3452: Domain of unknown function (DUF3452); InterPro: IPR024599 This domain is found in proteins of the retinoblastoma protein family Back     alignment and domain information
>PF08934 Rb_C: Rb C-terminal domain; InterPro: IPR015030 The Rb C-terminal domain is required for high-affinity binding to E2F-DP complexes and for maximal repression of E2F-responsive promoters, thereby acting as a growth suppressor by blocking the G1-S transition of the cell cycle Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query912
4ell_A411 Structure Of The Inactive Retinoblastoma Protein Po 3e-37
4elj_A656 Crystal Structure Of The Inactive Retinoblastoma Pr 2e-24
4elj_A656 Crystal Structure Of The Inactive Retinoblastoma Pr 3e-16
1gux_A218 Rb Pocket Bound To E7 Lxcxe Motif Length = 218 4e-24
1gh6_B333 Retinoblastoma Pocket Complexed With Sv40 Large T A 2e-21
1gh6_B333 Retinoblastoma Pocket Complexed With Sv40 Large T A 6e-16
3pom_A352 Crystal Structure Of The Unliganded Retinoblastoma 6e-21
3pom_A352 Crystal Structure Of The Unliganded Retinoblastoma 5e-16
2r7g_A347 Structure Of The Retinoblastoma Protein Pocket Doma 9e-21
2r7g_A347 Structure Of The Retinoblastoma Protein Pocket Doma 5e-16
1n4m_A345 Structure Of Rb Tumor Suppressor Bound To The Trans 1e-20
1n4m_A345 Structure Of Rb Tumor Suppressor Bound To The Trans 5e-16
1ad6_A185 Domain A Of Human Retinoblastoma Tumor Suppressor L 5e-20
1gux_B152 Rb Pocket Bound To E7 Lxcxe Motif Length = 152 2e-15
>pdb|4ELL|A Chain A, Structure Of The Inactive Retinoblastoma Protein Pocket Domain Length = 411 Back     alignment and structure 
Iteration: 1

 Score =  154 bits (388), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 215/461 (46%), Gaps = 92/461 (19%)
Query: 314 TAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRR----AHIILEAIFPSSGLGERC 369
           T + L  ++     +PS  L  +  +C  +    +++R     +I  E    +  +G+ C
Sbjct: 5   TIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKF--AKAVGQGC 62
Query: 370 V-TGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRC 428
           V  GS             QR    ++LYYRV+E+M  +E + L  +N + LL +  FH  
Sbjct: 63  VEIGS-------------QRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMS 109
Query: 429 MLACSAELVLATHKTVT---------MLFPAVLERTGITAFDLSKVIESFIRHEESLPRE 479
           +LAC+ E+V+AT+   T         + FP +L    + AFD  KVIESFI+ E +L RE
Sbjct: 110 LLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTRE 169
Query: 480 LRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHIN 539
           + +HL   E R++ES  W   S +++ +  ++       +R G    P   L++ A  +N
Sbjct: 170 MIKHLERCEHRIMESFAWLSDSPLFDLIKQSK-------DREG----PTDHLES-ACPLN 217
Query: 540 FSSGGLSPVHSLHKHETSPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRXXXXXXXX 599
                  P+ +   H  +      +R+PK+  +        R N T+  + +        
Sbjct: 218 L------PLQN--NHTAADMYLEPVRAPKKKGS------TTRVNSTANAETQAT------ 257
Query: 600 XXXXXXXXQSAFASPTRPNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQ-- 657
                    SAF +  +P           T +++F+ K+ +LA +R+N + ERL LS+  
Sbjct: 258 ---------SAFQT-QKP--------LKSTSLSLFYKKVYRLAYLRLNTLCERL-LSEHP 298
Query: 658 QIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQC 717
           ++   ++ LFQ  L     L  +RH+DQI++C  YG+ K+  ++L F+ I+  Y+  P  
Sbjct: 299 ELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHA 358
Query: 718 KPQVFRSVFVDWASARQSGRSEQDHVDIITFYNKIFVPAVK 758
             + F+ V +           E+++  II FYN +F+  +K
Sbjct: 359 VQETFKRVLI----------KEEEYDSIIVFYNSVFMQRLK 389
>pdb|4ELJ|A Chain A, Crystal Structure Of The Inactive Retinoblastoma Protein Phosphorylated At T373 Length = 656 Back     alignment and structure
>pdb|4ELJ|A Chain A, Crystal Structure Of The Inactive Retinoblastoma Protein Phosphorylated At T373 Length = 656 Back     alignment and structure
>pdb|1GUX|A Chain A, Rb Pocket Bound To E7 Lxcxe Motif Length = 218 Back     alignment and structure
>pdb|1GH6|B Chain B, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen Length = 333 Back     alignment and structure
>pdb|1GH6|B Chain B, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen Length = 333 Back     alignment and structure
>pdb|3POM|A Chain A, Crystal Structure Of The Unliganded Retinoblastoma Protein Pocket Domain Length = 352 Back     alignment and structure
>pdb|3POM|A Chain A, Crystal Structure Of The Unliganded Retinoblastoma Protein Pocket Domain Length = 352 Back     alignment and structure
>pdb|2R7G|A Chain A, Structure Of The Retinoblastoma Protein Pocket Domain In Complex With Adenovirus E1a Cr1 Domain Length = 347 Back     alignment and structure
>pdb|2R7G|A Chain A, Structure Of The Retinoblastoma Protein Pocket Domain In Complex With Adenovirus E1a Cr1 Domain Length = 347 Back     alignment and structure
>pdb|1N4M|A Chain A, Structure Of Rb Tumor Suppressor Bound To The Transactivation Domain Of E2f-2 Length = 345 Back     alignment and structure
>pdb|1N4M|A Chain A, Structure Of Rb Tumor Suppressor Bound To The Transactivation Domain Of E2f-2 Length = 345 Back     alignment and structure
>pdb|1AD6|A Chain A, Domain A Of Human Retinoblastoma Tumor Suppressor Length = 185 Back     alignment and structure
>pdb|1GUX|B Chain B, Rb Pocket Bound To E7 Lxcxe Motif Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query912
4ell_A411 Retinoblastoma-associated protein; cyclin fold, tu 1e-127
4elj_A656 Retinoblastoma-associated protein; cyclin fold, tu 1e-117
4elj_A656 Retinoblastoma-associated protein; cyclin fold, tu 7e-46
2r7g_A347 PP110, retinoblastoma-associated protein, P105-RB, 1e-62
2r7g_A347 PP110, retinoblastoma-associated protein, P105-RB, 3e-47
2qdj_A304 Retinoblastoma-associated protein; cyclin fold, cy 3e-40
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens} Length = 411 Back     alignment and structure
 Score =  390 bits (1002), Expect = e-127
 Identities = 110/500 (22%), Positives = 199/500 (39%), Gaps = 101/500 (20%)

Query: 311 AMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCV 370
              T + L  ++     +PS  L  +  +C  +    +++R   I   IF          
Sbjct: 2   EFNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGY-IFKEK------- 53

Query: 371 TGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCML 430
               +           QR    ++LYYRV+E+M  +E + L  +N + LL +  FH  +L
Sbjct: 54  --FAKAVGQGCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLL 111

Query: 431 ACSAELVLATHKTVT---------MLFPAVLERTGITAFDLSKVIESFIRHEESLPRELR 481
           AC+ E+V+AT+   T         + FP +L    + AFD  KVIESFI+ E +L RE+ 
Sbjct: 112 ACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMI 171

Query: 482 RHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFS 541
           +HL   E R++ES  W   S +++ +  ++               P   L++        
Sbjct: 172 KHLERCEHRIMESFAWLSDSPLFDLIKQSKDREG-----------PTDHLESACPLNLPL 220

Query: 542 SGGLSPVHSLHKHETSPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRLLGLNNLKSK 601
                     + H  +      +R+PK+  +  R                          
Sbjct: 221 Q---------NNHTAADMYLEPVRAPKKKGSTTRV------------------------N 247

Query: 602 PLPPPLQSAFASPTRPNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQ-QIR 660
                   A ++     P         T +++F+ K+ +LA +R+N + ERL     ++ 
Sbjct: 248 STANAETQATSAFQTQKP------LKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELE 301

Query: 661 ESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQ 720
             ++ LFQ  L     L  +RH+DQI++C  YG+ K+  ++L F+ I+  Y+  P    +
Sbjct: 302 HIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQE 361

Query: 721 VFRSVFVDWASARQSGRSEQDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSEVN 780
            F+ V +           E+++  II FYN +F+  +K  +++                 
Sbjct: 362 TFKRVLIK----------EEEYDSIIVFYNSVFMQRLKTNILQYAST------------- 398

Query: 781 HNNDGPCPGSPKVSVFPALP 800
                     P ++  P +P
Sbjct: 399 --------RPPTLAPIPHIP 410
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens} Length = 656 Back     alignment and structure
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens} Length = 656 Back     alignment and structure
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B Length = 347 Back     alignment and structure
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B Length = 347 Back     alignment and structure
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens} Length = 304 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 912
d2r7ga1199 a.74.1.3 (A:380-578) Retinoblastoma tumor suppress 5e-78
d2r7ga2142 a.74.1.3 (A:644-785) Retinoblastoma tumor suppress 5e-56
d1aisb295 a.74.1.2 (B:1206-1300) Transcription factor IIB (T 0.003
>d2r7ga1 a.74.1.3 (A:380-578) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Retinoblastoma tumor suppressor domains
domain: Retinoblastoma tumor suppressor domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  250 bits (639), Expect = 5e-78
 Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 19/207 (9%)

Query: 314 TAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGS 373
           T + L  ++     +PS  L  +  +C  +    +++R    +  IF             
Sbjct: 2   TIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKD-IGYIFKEK---------F 51

Query: 374 LQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACS 433
            +           QR    ++LYYRV+E+M  +E + L  +N + LL +  FH  +LAC+
Sbjct: 52  AKAVGQGCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACA 111

Query: 434 AELVLATHKTVT---------MLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHL 484
            E+V+AT+   T         + FP +L    + AFD  KVIESFI+ E +L RE+ +HL
Sbjct: 112 LEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHL 171

Query: 485 NSLEERLLESMVWEKGSSMYNSLTVAR 511
              E R++ES+ W   S +++ +  ++
Sbjct: 172 ERCEHRIMESLAWLSDSPLFDLIKQSK 198
>d2r7ga2 a.74.1.3 (A:644-785) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]} Length = 142 Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 95 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query912
d2r7ga1199 Retinoblastoma tumor suppressor domains {Human (Ho 100.0
d2r7ga2142 Retinoblastoma tumor suppressor domains {Human (Ho 100.0
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.35
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.23
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 96.53
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 95.61
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 87.9
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 87.5
>d2r7ga1 a.74.1.3 (A:380-578) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Retinoblastoma tumor suppressor domains
domain: Retinoblastoma tumor suppressor domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=456.46  Aligned_cols=188  Identities=30%  Similarity=0.497  Sum_probs=170.0

Q ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             69999999927999999089999985248893888999999999956477888974333577777644459999999999
Q 002530          313 TTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIWAEQRRLEA  392 (912)
Q Consensus       313 ~s~~wL~~~ls~l~~~PS~~L~~~f~~C~~d~~~~i~~rv~~l~e~~f~~~~~~~~~~~~~~~~~~~~d~~~a~qR~~~a  392 (912)
                      +|++|||++++|++++||++|.+||++|++||+++|++||++|++.|.+.+..+.          +.....|++||+.+|
T Consensus         1 ~s~~~L~~~l~~~~~~PS~~L~~~f~~C~~dp~~~i~~rv~~l~~~F~~~~~~~~----------~~~~~~~a~~R~~~a   70 (199)
T d2r7ga1           1 NTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAKAV----------GQGCVEIGSQRYKLG   70 (199)
T ss_dssp             CCHHHHHHHHHHSCSSCCHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHH----------CGGGHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHH
T ss_conf             9588999984589999889999999848998799999999999999999863657----------842169999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHCCCCC---------CCHHHHHHHCCCCCCHHH
Q ss_conf             99999999999999996305331576410047799999999999995406776---------452478641189851256
Q 002530          393 LKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVT---------MLFPAVLERTGITAFDLS  463 (912)
Q Consensus       393 ~~LYYrvLE~Il~~E~~rl~~~~ls~LL~~e~FhrsLlACclEiVl~sy~~~~---------~~FPwiLe~~~i~afdf~  463 (912)
                      ++|||+|||+||.+|.+|+++.|++.||++++||+||||||+|||+++|++++         +.|||||++|+|+|||||
T Consensus        71 ~~LYY~~Le~Il~~E~~r~~~~~l~~LL~~~~Fh~sLlACclEvVl~~y~~~~~~~~~~~~~l~FPwIL~~~~i~afdf~  150 (199)
T d2r7ga1          71 VRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFY  150 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHC------CCCCCTTHHHHHHTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHH
T ss_conf             99999999999999998676204999984758899999999999999962432235665535776099998099798999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             58789974179999989999999999998452127799115777631
Q 002530          464 KVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVA  510 (912)
Q Consensus       464 KVIE~fIR~e~~LpRelvkHLn~IEE~ILEslAW~~~S~Lw~~L~~a  510 (912)
                      ||||+|||||++|||||+||||+|||||||||||++|||||++|+.+
T Consensus       151 KVIE~fVr~e~~L~RelvKHLn~iEe~iLEslaW~~~Splw~~l~~~  197 (199)
T d2r7ga1         151 KVIESFIKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQS  197 (199)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTGGGSTTCTHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99899874378899899999999999999998836798699998872
>d2r7ga2 a.74.1.3 (A:644-785) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure