Citrus Sinensis ID: 002537

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-

MYKTVAYLGKEILGEVEIYPQQQGEGGEGEEKNKKVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAVANLDPRLAPFQYTMPSSSSTTTLPTSQAAVMPLANMQFPPATSLVKPLGHVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQVSVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIENPSTSDRPHENQRMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLSRSSSSSRDVDFESGRDVSSTETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVKSDSGSGHGDGSRFSNANENCFMGEINSFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFLALND

ccEEEEEEccEEEEEEEEEEcccccccccccccccccccEEEEEEccccccccccHHHHHcccccEEEEEEccccccHHHHHHHHHHHHccccEEEEcccccEEEEEEEEEccccccccEEEEEEEcccHHHHHHHHHHcccEEEEEEccHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHcHHHHHHcHHHHHHHHHHHcccccccccEEEEEccEEcccccccccccccccEEcccccEEEEEccccccccEEEEEEcccHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHccccccccccccccccEEEccccccccHHHHcccccccccEEEEEEcccccccccccccEEEEccccccccHHHHHcccccHHHHHHHHHccccccccHHcHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEcccccccccccEEEEEEEccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEcccccccccccccEEEEEEEEccEEEcccccccHHHHHHHHHHHHHHHHHcccc

ccEEEEEEccEEEEEEEEEEccccccccccccHHHcccEEEEcccccccccccccEEEEEEccccEEEEEccccccccHHHHHHHHHHHHccEEEEEcccccEEEEEEcccccccccccEEEEEEccccHHHHHHHHHHHcccEEEEEccHHHHEEccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEccccEEEEEEEEEcccccccccccEccEEEcccccEEEEEccccccccEEEEEccccHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHHHHccccccccHHHHHHcEEEcccccccHHHHHcccccccccEEEEEEcccccccccccccEEEEcccccccccHHHHHccccEEEEEEHHcHccccccHHHHHHHHHHHHHHHEccccHcccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEEEEccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEcccccccccccccEEEEEEEEccEEEcccccccHHHHHHHHHHHHHHHHHHHcc

MYKTVAYLGKEIlgeveiypqqqgeggegeeknkKVFDEIRISYFSeasercpplaVLHTITASGIcfkmeskssdniqLHLLHSScirenktavmplglTEELHLVAMYSrnnekqypcfwafsvgsglynscLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAendqvnengkvIKVQSEVVPALSDSHQALVRPLIRLQEkniiltrinpqirdtsvlvRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRlldpesnlintKELLDRIVcvksgsrkslfnvfqdgtchpkmalVIDDrlkvwddkdqprvhvvpafapyyapqaeannaiPVLCVARNIacnvrggffkeFDEGLlqripeisyeddvkdipsppdvsnylvseddaatangikdplsfdgmADAEVERRLKEAIAASATISSAvanldprlapfqytmpsssstttlptsqaavmplanmqfppatslvkplghvgppeqslqsspareegevpeseldpdTRRRLLILQHgmdtrenapseapfpartqmqvsvprvpsrgswfpveeemsprqlnravpkefplnseamqiekhrpphpsffpkienpstsdrphenqrmpkealrRDDRLRLNhtlsdyqsfsgeeiplsrsssssrdvdfesgrdvsstetpsgvLQDIAMKcgtkvefrpalvasTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRvksdsgsghgdgsrfsnanencfmgeinsfggqplakdeslssepsklvdprlegskKLMGSVSALKELCMteglgvvfqqqppssansvqkdeVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFLALND

MYKTVAYLgkeilgeveiypqqqgeggegeeknkKVFDEIRISYFseasercppLAVLHTITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLrkistevdpqrIAGMQAEVKRYQDDKNILKQYaendqvnengKVIKVQSEVVPALSDSHQALVRPLIrlqekniiltrinpqirdtsvlvrlrpaWEDLRSYltargrkrfeVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLfnvfqdgtchpKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEIsyeddvkdipspPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAVANLDPRLAPFQYTMPSSSSTTTLPTSQAAVMPLANMQFPPATSLVKPLGHVGPPEqslqsspareegevpeseldpdtrRRLLILQHGMdtrenapseapfpartqmqvsvprVPSRGSWFPVeeemsprqlnravPKEFPLNSEAMQIEKhrpphpsffpkienpstsdrphenqrmpkealrrddrlrLNHTlsdyqsfsgeeiplsrsssssrdvdfesgrdvsstetpsgvlQDIAMKCGTKVEFRPALVASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVKSDSGSGHGDGSRFSNANENCFMGEINSFGGQPLAKDESlssepsklvdprlegsKKLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFLALND

MYKTVAYLGKEILGEVEIYPqqqgeggegeeKNKKVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEaiaasatissavaNLDPRLAPFQYtmpsssstttlptsQAAVMPLANMQFPPATSLVKPLGHVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQVSVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIENPSTSDRPHENQRMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLsrsssssrDVDFESGRDVSSTETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEAWFAGEKIGEGIGRTrreaqrqaaeGSIKHLANVYMLRVKsdsgsghgdgsRFSNANENCFMGEINSFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFLALND

***TVAYLGKEILGEVEIY****************VFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDP*RIAG*******Y****NILKQYA********GKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYE******************************************************************************************************************************************************************************************************************************************************************************************************VLQDIAMKCGTKVEFRPALVASTELQFSIEAWFAGEKIGEGIG**************IKHLANVYMLR****************************************************************ALKELCMTEGLGVVF**************EVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFLAL**

***TVAYLGKEILGEVEIYPQQ**********NKKVFDEIRISYFSEASERCPPLAVLHTITASGIC*****************SSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALL******************************QYAENDQVNENGKVIKVQ**************VRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELL*************LFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIP*************************************************************************************************************************************************************************************************************************************************************************************************************QDIAMKCGTKVEFRPALVASTELQFSIEAWFAGEKIGEGI****************KHLANV*********************************************************************LKELCMTEGLGVV*****************YAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFLA***

MYKTVAYLGKEILGEVEIYPQ**********KNKKVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAVANLDPRLAPFQYT**********PTSQAAVMPLANMQFPPATSLVKPLG*************************DPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQVSVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIEN****************ALRRDDRLRLNHTLSDYQS********************************SGVLQDIAMKCGTKVEFRPALVASTELQFSIEAWFAGEKIGEGIGR**********EGSIKHLANVYMLRVKS*********SRFSNANENCFMGEINSFGGQP****************PRLEGSKKLMGSVSALKELCMTEGLGVVFQQQ*********KDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFLALND

MYKTVAYLGKEILGEVEIYPQQQGEGGEGEEKNKKVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAVANLDPRLAPFQYTMPSSSSTTTLPTSQAAVMPLANMQFPPATSLVKPLGHVGP****************PESELDPDTRRRLLILQHGMDT***APSEAPFPAR*QMQVSVP****************************************************************************************************************DVSSTETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVKSD*******************************************************MGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQVFLLDIQNFLALND

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		911	2.2.26 [Sep-21-2011]
Q5YDB6		967	RNA polymerase II C-termi	yes	no	0.969	0.913	0.633	0.0
Q5YDB5		770	RNA polymerase II C-termi	no	no	0.788	0.932	0.474	1e-179
Q03254		732	RNA polymerase II subunit	yes	no	0.120	0.150	0.314	9e-05
Q7TSG2		960	RNA polymerase II subunit	yes	no	0.148	0.140	0.295	0.0001
Q9Y5B0		961	RNA polymerase II subunit	no	no	0.090	0.085	0.329	0.0001

>sp\|Q5YDB6\|CPL1_ARATH RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1	Back alignment and function desciption

 Score = 1136 bits (2939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/915 (63%), Positives = 698/915 (76%), Gaps = 32/915 (3%)

Query: 7   YLGKEILGEVEIYP-----QQQGEGGEGEEKNKKVFDE-----IRISYFSEASERCPPLA 56
           + G   LGE+EIYP     QQQ +  +  +K ++   E     IRIS+FS++ ERCPPLA
Sbjct: 10  FHGDGRLGELEIYPSRELNQQQDDVMKQRKKKQREVMELAKMGIRISHFSQSGERCPPLA 69

Query: 57  VLHTITASGICFKME-SKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNE 115
           +L TI++ G+CFK+E S S     L L +SSC+R+NKTAVM LG  EELHLVAMYS N +
Sbjct: 70  ILTTISSCGLCFKLEASPSPAQESLSLFYSSCLRDNKTAVMLLG-GEELHLVAMYSENIK 128

Query: 116 KQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKIST 175
              PCFWAFSV  G+Y+SCL MLNLRCLGIVFDLDETL+VANTMRSFED+I+   R+I+ 
Sbjct: 129 NDRPCFWAFSVAPGIYDSCLVMLNLRCLGIVFDLDETLVVANTMRSFEDKIDGFQRRINN 188

Query: 176 EVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRP 235
           E+DPQR+A + AE+KRYQDDKN+LKQY E+DQV ENG+VIKVQSE+VPALSD+HQ LVRP
Sbjct: 189 EMDPQRLAVIVAEMKRYQDDKNLLKQYIESDQVVENGEVIKVQSEIVPALSDNHQPLVRP 248

Query: 236 LIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYAL 295
           LIRLQEKNIILTRINP IRDTSVLVR+RP+WE+LRSYLTA+GRKRFEVYVCTMAERDYAL
Sbjct: 249 LIRLQEKNIILTRINPMIRDTSVLVRMRPSWEELRSYLTAKGRKRFEVYVCTMAERDYAL 308

Query: 296 EMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDK 355
           EMWRLLDPE NLINT +LL RIVCVKSG +KSLFNVF DGTCHPKMALVIDDRLKVWD+K
Sbjct: 309 EMWRLLDPEGNLINTNDLLARIVCVKSGFKKSLFNVFLDGTCHPKMALVIDDRLKVWDEK 368

Query: 356 DQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYE 415
           DQPRVHVVPAFAPYY+PQAEA  A PVLCVARN+AC VRGGFF++FD+ LL RI EISYE
Sbjct: 369 DQPRVHVVPAFAPYYSPQAEA-AATPVLCVARNVACGVRGGFFRDFDDSLLPRIAEISYE 427

Query: 416 DDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAV 475
           +D +DIPSPPDVS+YLVSEDD +  NG KDPLSFDGMAD EVERRLKEAI+AS+ +  A 
Sbjct: 428 NDAEDIPSPPDVSHYLVSEDDTSGLNGNKDPLSFDGMADTEVERRLKEAISASSAVLPA- 486

Query: 476 ANLDPRL-APFQYTM---------PSSSSTTTLPTSQAAVMPLANMQFPPA-TSLVKPLG 524
           AN+DPR+ AP Q+ M                      A   P    Q P   TS+ K   
Sbjct: 487 ANIDPRIAAPVQFPMASASSVSVPVPVQVVQQAIQPSAMAFPSIPFQQPQQPTSIAK--- 543

Query: 525 HVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQV 584
           H+ P E SLQSSPAREEGEVPESELDPDTRRRLLILQHG DTR+ APSE  FP R  +Q 
Sbjct: 544 HLVPSEPSLQSSPAREEGEVPESELDPDTRRRLLILQHGQDTRDPAPSEPSFPQRPPVQA 603

Query: 585 SVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIENPSTS 644
               V SR  WFPVEEEM P Q+ RAV KE+PL+SE + +EKHRP HPSFF KI+N + S
Sbjct: 604 PPSHVQSRNGWFPVEEEMDPAQIRRAVSKEYPLDSEMIHMEKHRPRHPSFFSKIDNSTQS 663

Query: 645 DRP-HENQRMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLSRSSSSSRDVDFESGRDVSS 703
           DR  HEN+R PKE+LRRD++LR N+ L D   F GE+   ++SSS + D+DF   R VS+
Sbjct: 664 DRMLHENRRPPKESLRRDEQLRSNNNLPDSHPFYGEDASWNQSSSRNSDLDFLPERSVSA 723

Query: 704 TETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAA 763
           TET + VL  IA+KCG KVE++P+LV+ST+L+FS+EAW + +KIGEGIG++RREA  +AA
Sbjct: 724 TETSADVLHGIAIKCGAKVEYKPSLVSSTDLRFSVEAWLSNQKIGEGIGKSRREALHKAA 783

Query: 764 EGSIKHLANVYMLRVKSDSGSGHGDGSRFSNANENCFMGEINSFGGQPLAKDESLSSEPS 823
           E SI++LA+ YM R   D G  H D + F+  NEN  MG  N+   QP A+DE+     S
Sbjct: 784 EASIQNLADGYM-RANGDPGPSHRDATPFT--NENISMGNANALNNQPFARDETALPVSS 840

Query: 824 KLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVL 883
           +  DPRLEGS +  GS++AL+ELC +EGL + FQ Q    ++ V +DE++AQVEIDG+V+
Sbjct: 841 RPTDPRLEGSMRHTGSITALRELCASEGLEMAFQSQRQLPSDMVHRDELHAQVEIDGRVV 900

Query: 884 GKGIGSTWDEAKMQV 898
           G+G+GSTWDEA+MQ 
Sbjct: 901 GEGVGSTWDEARMQA 915

Processively dephosphorylates 'Ser-5' but not 'Ser-2' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II. Together with CPL2, required for male gametes fertility. Multifunctional regulator that modulates plant growth, stress, and phytohormones responses. Negative regulator of stress gene transcription involved in abscisic acid (ABA) mediated and jasmonic acid (JA) mediated signaling pathways, NaCl, osmotic stress, wounding, and cold resistance. Regulates negatively the expression of jasmonic acid (JA) biosynthetic genes in response to wounding.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6

>sp\|Q5YDB5\|CPL2_ARATH RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=3	Back alignment and function description

>sp\|Q03254\|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCP1 PE=1 SV=1	Back alignment and function description

>sp\|Q7TSG2\|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus musculus GN=Ctdp1 PE=1 SV=1	Back alignment and function description

>sp\|Q9Y5B0\|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo sapiens GN=CTDP1 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		911
255555995		978	double-stranded RNA binding protein, put	0.983	0.916	0.750	0.0
356521333		954	PREDICTED: RNA polymerase II C-terminal	0.971	0.927	0.705	0.0
224076842		967	predicted protein [Populus trichocarpa]	0.965	0.910	0.715	0.0
356548751		960	PREDICTED: RNA polymerase II C-terminal	0.980	0.930	0.698	0.0
356555137		958	PREDICTED: RNA polymerase II C-terminal	0.971	0.923	0.694	0.0
147832855		894	hypothetical protein VITISV_004100 [Viti	0.907	0.925	0.685	0.0
356549363		960	PREDICTED: RNA polymerase II C-terminal	0.969	0.919	0.691	0.0
297803978		965	hypothetical protein ARALYDRAFT_492708 [	0.970	0.916	0.647	0.0
449433867		803	PREDICTED: RNA polymerase II C-terminal	0.855	0.970	0.724	0.0
79481163		967	RNA polymerase II C-terminal domain phos	0.969	0.913	0.633	0.0

>gi\|255555995\|ref\|XP_002519032.1\| double-stranded RNA binding protein, putative [Ricinus communis] gi\|223541695\|gb\|EEF43243.1\| double-stranded RNA binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1363 bits (3527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 690/919 (75%), Positives = 779/919 (84%), Gaps = 23/919 (2%)

Query: 1   MYKTVAYLGKEILGEVEIYPQQQGEGGEGEEKNK--------KVFDEI----RISYFSEA 48
           MYK+V Y G E+LGEVEIY QQ+ +  + EE  +        +V DEI    RIS+FS+A
Sbjct: 1   MYKSVVYKGDELLGEVEIYAQQEQKLQQQEELQEQEQELKKKRVIDEILKGIRISHFSQA 60

Query: 49  SERCPPLAVLHTITASGICFKMESKSSDNIQ--LHLLHSSCIRENKTAVMPLGLTEELHL 106
           SERCPPLAVLHTIT +GICFKMESK+S ++   LHLLHSSCI+E+KTAV+ L   EELHL
Sbjct: 61  SERCPPLAVLHTITTNGICFKMESKNSVSLDTPLHLLHSSCIQESKTAVVLLQGGEELHL 120

Query: 107 VAMYSRNNEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRI 166
           VAM+SRN+E+QYPCFWAF++ SGLY+SCL MLNLRCLGIVFDLDETLIVANTMRSFEDRI
Sbjct: 121 VAMFSRNDERQYPCFWAFNISSGLYDSCLVMLNLRCLGIVFDLDETLIVANTMRSFEDRI 180

Query: 167 EALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALS 226
           EAL RKISTE+DPQRI+GM +EVKRYQDDK ILKQY +NDQV ENG+VIK Q EVVPALS
Sbjct: 181 EALQRKISTELDPQRISGMLSEVKRYQDDKTILKQYVDNDQVVENGRVIKTQFEVVPALS 240

Query: 227 DSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVC 286
           D+HQ +VRPLIRLQE+NIILTRINPQIRDTSVLVRLRPAWE+LRSYLTARGRKRFEVYVC
Sbjct: 241 DNHQTIVRPLIRLQERNIILTRINPQIRDTSVLVRLRPAWEELRSYLTARGRKRFEVYVC 300

Query: 287 TMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVID 346
           TMAERDYALEMWRLLDPESNLIN+KELLDRIVCVKSG RKSLFNVFQDG CHPKMALVID
Sbjct: 301 TMAERDYALEMWRLLDPESNLINSKELLDRIVCVKSGLRKSLFNVFQDGICHPKMALVID 360

Query: 347 DRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLL 406
           DRLKVWD+KDQPRVHVVPAFAPYYAPQAEANNA+PVLCVARN+ACNVRGGFFKEFDEGLL
Sbjct: 361 DRLKVWDEKDQPRVHVVPAFAPYYAPQAEANNAVPVLCVARNVACNVRGGFFKEFDEGLL 420

Query: 407 QRIPEISYEDDVKDIPSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIA 466
           QRIPEIS+EDD+ DIPSPPDVSNYLV EDDA T+NG +DPLSFDGMADAEVE+RLKEAI+
Sbjct: 421 QRIPEISFEDDMNDIPSPPDVSNYLVPEDDAFTSNGNRDPLSFDGMADAEVEKRLKEAIS 480

Query: 467 ASATISSAVANLDPRLA-PFQYTMPSSSSTTTLPTSQAAVMPLANMQFPPATSLVKPLGH 525
            S+   S VANLD RL  P QYTM +SSS+  +PTSQ AV+   +MQ P A  LVKPLG 
Sbjct: 481 ISSAFPSTVANLDARLVPPLQYTM-ASSSSIPVPTSQPAVVTFPSMQLPQAAPLVKPLGQ 539

Query: 526 VGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPAR--TQMQ 583
           V P E SLQSSPAREEGEVPESELDPDTRRRLLILQHG D R+ APSE+PFP R    MQ
Sbjct: 540 VVPSEPSLQSSPAREEGEVPESELDPDTRRRLLILQHGQDLRDPAPSESPFPVRPSNSMQ 599

Query: 584 VSVPRVPSRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIENPST 643
           VSVPRV SRG+W PVEEEMSPRQLNRAV +EFP+++E M I+KHRP HPSFFPK+E+   
Sbjct: 600 VSVPRVQSRGNWVPVEEEMSPRQLNRAVTREFPMDTEPMHIDKHRPHHPSFFPKVESSIP 659

Query: 644 SDR-PHENQRMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLSRSSSSSRDVDFESGRDVS 702
           S+R PHENQR+PK A  +DDRLRLN T+S+YQS SGEE  LSRSSSS+RD+D ES R VS
Sbjct: 660 SERMPHENQRLPKVAPYKDDRLRLNQTMSNYQSLSGEENSLSRSSSSNRDLDVESDRAVS 719

Query: 703 STETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEAWFAGEKIGEGIGRTRREAQRQA 762
           S ETP  VL +I+MKCG KVEF+ +LV S +LQFS+EAWFAGE++GEG GRTRREAQ  A
Sbjct: 720 SAETPVRVLHEISMKCGAKVEFKHSLVNSRDLQFSVEAWFAGERVGEGFGRTRREAQSVA 779

Query: 763 AEGSIKHLANVYMLRVKSDSGSGHGDGSRFSNANENCFMGEINSFGGQPLAKDESL---- 818
           AE SIK+LAN+Y+ R K D+G+ HGD S++S+AN+N F+G +NSFG QPL KDE L    
Sbjct: 780 AEASIKNLANIYISRAKPDNGALHGDASKYSSANDNGFLGHVNSFGSQPLPKDEILSYSD 839

Query: 819 SSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEI 878
           SSE S L+DPRLE SKK M SV+ALKE CM EGLGV F  Q P S+NSVQ  EV+AQVEI
Sbjct: 840 SSEQSGLLDPRLESSKKSMSSVNALKEFCMMEGLGVNFLAQTPLSSNSVQNAEVHAQVEI 899

Query: 879 DGQVLGKGIGSTWDEAKMQ 897
           DGQV+GKGIGST+DEAKMQ
Sbjct: 900 DGQVMGKGIGSTFDEAKMQ 918

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356521333\|ref\|XP_003529311.1\| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|224076842\|ref\|XP_002305017.1\| predicted protein [Populus trichocarpa] gi\|222847981\|gb\|EEE85528.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356548751\|ref\|XP_003542763.1\| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356555137\|ref\|XP_003545893.1\| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|147832855\|emb\|CAN72816.1\| hypothetical protein VITISV_004100 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356549363\|ref\|XP_003543063.1\| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|297803978\|ref\|XP_002869873.1\| hypothetical protein ARALYDRAFT_492708 [Arabidopsis lyrata subsp. lyrata] gi\|297315709\|gb\|EFH46132.1\| hypothetical protein ARALYDRAFT_492708 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|449433867\|ref\|XP_004134718.1\| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1-like [Cucumis sativus] gi\|449479317\|ref\|XP_004155567.1\| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II C-terminal domain phosphatase-like 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi|79481163|ref|NP_193898.3| RNA polymerase II C-terminal domain phosphatase-like 1 [Arabidopsis thaliana] gi|75111335|sp|Q5YDB6.1|CPL1_ARATH RecName: Full=RNA polymerase II C-terminal domain phosphatase-like 1; Short=FCP-like 1; AltName: Full=Carboxyl-terminal phosphatase-like 1; Short=AtCPL1; Short=CTD phosphatase-like 1; AltName: Full=Protein FIERY 2; AltName: Full=Protein JASMONATE OVEREXPRESSING 1 gi|49175305|gb|AAT52022.1| C-terminal domain phosphatase-like 1 [Arabidopsis thaliana] gi|332659088|gb|AEE84488.1| RNA polymerase II C-terminal domain phosphatase-like 1 [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		911
TAIR\|locus:2119053		967	CPL1 "C-terminal domain phosph	0.963	0.907	0.614	8.4e-287

TAIR\|locus:2119053 CPL1 "C-terminal domain phosphatase-like 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2755 (974.9 bits), Expect = 8.4e-287, P = 8.4e-287
 Identities = 557/906 (61%), Positives = 665/906 (73%)

Query:    13 LGEVEIYPXXXXXXXXXXX------KNKKVFD----EIRISYFSEASERCPPLAVLHTIT 62
             LGE+EIYP                 K ++V +     IRIS+FS++ ERCPPLA+L TI+
Sbjct:    16 LGELEIYPSRELNQQQDDVMKQRKKKQREVMELAKMGIRISHFSQSGERCPPLAILTTIS 75

Query:    63 ASGICFKME-SKSSDNIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRNNEKQYPCF 121
             + G+CFK+E S S     L L +SSC+R+NKTAVM LG  EELHLVAMYS N +   PCF
Sbjct:    76 SCGLCFKLEASPSPAQESLSLFYSSCLRDNKTAVMLLG-GEELHLVAMYSENIKNDRPCF 134

Query:   122 WAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQR 181
             WAFSV  G+Y+SCL MLNLRCLGIVFDLDETL+VANTMRSFED+I+   R+I+ E+DPQR
Sbjct:   135 WAFSVAPGIYDSCLVMLNLRCLGIVFDLDETLVVANTMRSFEDKIDGFQRRINNEMDPQR 194

Query:   182 IAGMQAEVKRYQDDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQE 241
             +A + AE+KRYQDDKN+LKQY E+DQV ENG+VIKVQSE+VPALSD+HQ LVRPLIRLQE
Sbjct:   195 LAVIVAEMKRYQDDKNLLKQYIESDQVVENGEVIKVQSEIVPALSDNHQPLVRPLIRLQE 254

Query:   242 KNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLL 301
             KNIILTRINP IRDTSVLVR+RP+WE+LRSYLTA+GRKRFEVYVCTMAERDYALEMWRLL
Sbjct:   255 KNIILTRINPMIRDTSVLVRMRPSWEELRSYLTAKGRKRFEVYVCTMAERDYALEMWRLL 314

Query:   302 DPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVH 361
             DPE NLINT +LL RIVCVKSG +KSLFNVF DGTCHPKMALVIDDRLKVWD+KDQPRVH
Sbjct:   315 DPEGNLINTNDLLARIVCVKSGFKKSLFNVFLDGTCHPKMALVIDDRLKVWDEKDQPRVH 374

Query:   362 VVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDI 421
             VVPAFAPYY+PQAEA  A PVLCVARN+AC VRGGFF++FD+ LL RI EISYE+D +DI
Sbjct:   375 VVPAFAPYYSPQAEAA-ATPVLCVARNVACGVRGGFFRDFDDSLLPRIAEISYENDAEDI 433

Query:   422 PSPPDVSNYLVSEDDAATANGIKDPLSFDGMADAEVERRLKEXXXXXXXXXXXXXNLDPR 481
             PSPPDVS+YLVSEDD +  NG KDPLSFDGMAD EVERRLKE             N+DPR
Sbjct:   434 PSPPDVSHYLVSEDDTSGLNGNKDPLSFDGMADTEVERRLKEAISASSAVLPAA-NIDPR 492

Query:   482 LA-PFQYXXXXXXXXXX---XXXXQAAVMPLANMQFP--PATSLVKPLG---HVGPPEQS 532
             +A P Q+                 Q A+ P A M FP  P     +P     H+ P E S
Sbjct:   493 IAAPVQFPMASASSVSVPVPVQVVQQAIQPSA-MAFPSIPFQQPQQPTSIAKHLVPSEPS 551

Query:   533 LQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQVSVPRVPSR 592
             LQSSPAREEGEVPESELDPDTRRRLLILQHG DTR+ APSE  FP R  +Q     V SR
Sbjct:   552 LQSSPAREEGEVPESELDPDTRRRLLILQHGQDTRDPAPSEPSFPQRPPVQAPPSHVQSR 611

Query:   593 GSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQIEKHRPPHPSFFPKIENPSTSDRP-HENQ 651
               WFPVEEEM P Q+ RAV KE+PL+SE + +EKHRP HPSFF KI+N + SDR  HEN+
Sbjct:   612 NGWFPVEEEMDPAQIRRAVSKEYPLDSEMIHMEKHRPRHPSFFSKIDNSTQSDRMLHENR 671

Query:   652 RMPKEALRRDDRLRLNHTLSDYQSFSGEEIPLXXXXXXXXDVDFESGRDVSSTETPSGVL 711
             R PKE+LRRD++LR N+ L D   F GE+           D+DF   R VS+TET + VL
Sbjct:   672 RPPKESLRRDEQLRSNNNLPDSHPFYGEDASWNQSSSRNSDLDFLPERSVSATETSADVL 731

Query:   712 QDIAMKCGTKVEFRPALVASTELQFSIEAWFAGEKIGEGIGRTXXXXXXXXXXGSIKHLA 771
               IA+KCG KVE++P+LV+ST+L+FS+EAW + +KIGEGIG++           SI++LA
Sbjct:   732 HGIAIKCGAKVEYKPSLVSSTDLRFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNLA 791

Query:   772 NVYMLRVKXXXXXXXXXXXRFSNANENCFMGEINSFGGQPLAKDESLSSEPSKLVDPRLE 831
             + YM R              F+N  EN  MG  N+   QP A+DE+     S+  DPRLE
Sbjct:   792 DGYM-RANGDPGPSHRDATPFTN--ENISMGNANALNNQPFARDETALPVSSRPTDPRLE 848

Query:   832 GSKKLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTW 891
             GS +  GS++AL+ELC +EGL + FQ Q    ++ V +DE++AQVEIDG+V+G+G+GSTW
Sbjct:   849 GSMRHTGSITALRELCASEGLEMAFQSQRQLPSDMVHRDELHAQVEIDGRVVGEGVGSTW 908

Query:   892 DEAKMQ 897
             DEA+MQ
Sbjct:   909 DEARMQ 914


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      911       844   0.00081  122 3  11 22  0.41    34
                                                     37  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  624 (66 KB)
  Total size of DFA:  401 KB (2195 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  75.92u 0.21s 76.13t   Elapsed:  00:00:03
  Total cpu time:  75.92u 0.21s 76.13t   Elapsed:  00:00:03
  Start:  Tue May 21 12:05:33 2013   End:  Tue May 21 12:05:36 2013

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0019204 "nucleotide phosphatase activity" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0004647 "phosphoserine phosphatase activity" evidence=IDA

GO:0016791 "phosphatase activity" evidence=IDA

GO:0009611 "response to wounding" evidence=IMP

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5YDB6	CPL1_ARATH	3, ., 1, ., 3, ., 1, 6	0.6338	0.9692	0.9131	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3.16	0.991
3rd Layer	3.1.3	0.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00010272001	SubName- Full=Chromosome undetermined scaffold_252, whole genome shotgun sequence; (935 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		911
TIGR02250		156	TIGR02250, FCP1_euk, FCP1-like phosphatase, phosph	6e-13
pfam00035		66	pfam00035, dsrm, Double-stranded RNA binding motif	7e-07
smart00358		67	smart00358, DSRM, Double-stranded RNA binding moti	7e-07
smart00577		148	smart00577, CPDc, catalytic domain of ctd-like pho	5e-06
cd00048		68	cd00048, DSRM, Double-stranded RNA binding motif	1e-05
smart00358		67	smart00358, DSRM, Double-stranded RNA binding moti	5e-05
TIGR02191		220	TIGR02191, RNaseIII, ribonuclease III, bacterial	2e-04
pfam00035		66	pfam00035, dsrm, Double-stranded RNA binding motif	4e-04
COG0571		235	COG0571, Rnc, dsRNA-specific ribonuclease [Transcr	0.001

>gnl\|CDD\|131304 TIGR02250, FCP1_euk, FCP1-like phosphatase, phosphatase domain	Back alignment and domain information

 Score = 66.9 bits (164), Expect = 6e-13
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 15/98 (15%)

Query: 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIV 318
           L +LRP    L  +L     K +E++V TM  R YA  + +L+DP+          DRI+
Sbjct: 56  LTKLRPF---LHEFLK-EASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFG-----DRII 106

Query: 319 CVK-SGSR--KSLFNVFQDGTCHPKMALVIDDRLKVWD 353
               SGS   KSL  +F        M ++IDDR  VW 
Sbjct: 107 SRDESGSPHTKSLLRLFPADES---MVVIIDDREDVWP 141

This model represents the phosphatase domain of the humanRNA polymerase II subunit A C-terminal domain phosphatase (FCP1, ) and closely related phosphatases from eukaryotes including plants, fungi and slime mold. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDDppphW). This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3.This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the pfam03031. Length = 156

>gnl\|CDD\|215670 pfam00035, dsrm, Double-stranded RNA binding motif	Back alignment and domain information

>gnl\|CDD\|214634 smart00358, DSRM, Double-stranded RNA binding motif	Back alignment and domain information

>gnl\|CDD\|214729 smart00577, CPDc, catalytic domain of ctd-like phosphatases	Back alignment and domain information

>gnl\|CDD\|238007 cd00048, DSRM, Double-stranded RNA binding motif	Back alignment and domain information

>gnl\|CDD\|214634 smart00358, DSRM, Double-stranded RNA binding motif	Back alignment and domain information

>gnl\|CDD\|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial	Back alignment and domain information

>gnl\|CDD\|215670 pfam00035, dsrm, Double-stranded RNA binding motif	Back alignment and domain information

>gnl\|CDD\|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		911
KOG0323		635	consensus TFIIF-interacting CTD phosphatases, incl	100.0
TIGR02250		156	FCP1_euk FCP1-like phosphatase, phosphatase domain	99.94
KOG3732		339	consensus Staufen and related double-stranded-RNA-	99.9
TIGR02251		162	HIF-SF_euk Dullard-like phosphatase domain. This d	99.77
PF03031		159	NIF: NLI interacting factor-like phosphatase; Inte	99.76
PHA02701		183	ORF020 dsRNA-binding PKR inhibitor; Provisional	99.58
smart00577		148	CPDc catalytic domain of ctd-like phosphatases.	99.57
PHA03103		183	double-strand RNA-binding protein; Provisional	99.51
COG5190		390	FCP1 TFIIF-interacting CTD phosphatases, including	99.5
smart00358		67	DSRM Double-stranded RNA binding motif.	99.47
cd00048		68	DSRM Double-stranded RNA binding motif. Binding is	99.45
PF00035		67	dsrm: Double-stranded RNA binding motif; InterPro:	99.44
PF00035		67	dsrm: Double-stranded RNA binding motif; InterPro:	99.44
smart00358		67	DSRM Double-stranded RNA binding motif.	99.4
PRK12371		235	ribonuclease III; Reviewed	99.39
cd00048		68	DSRM Double-stranded RNA binding motif. Binding is	99.38
KOG1605		262	consensus TFIIF-interacting CTD phosphatase, inclu	99.36
PHA03103		183	double-strand RNA-binding protein; Provisional	99.32
COG0571		235	Rnc dsRNA-specific ribonuclease [Transcription]	99.32
PHA02701		183	ORF020 dsRNA-binding PKR inhibitor; Provisional	99.3
KOG2777		542	consensus tRNA-specific adenosine deaminase 1 [RNA	99.28
PRK14718		467	ribonuclease III; Provisional	99.26
PRK12372		413	ribonuclease III; Reviewed	99.22
PRK00102		229	rnc ribonuclease III; Reviewed	99.15
TIGR02245		195	HAD_IIID1 HAD-superfamily subfamily IIID hydrolase	99.13
TIGR02191		220	RNaseIII ribonuclease III, bacterial. This family	99.08
TIGR02191		220	RNaseIII ribonuclease III, bacterial. This family	98.93
PRK00102		229	rnc ribonuclease III; Reviewed	98.92
KOG4334		650	consensus Uncharacterized conserved protein, conta	98.86
PRK12371		235	ribonuclease III; Reviewed	98.86
KOG3732		339	consensus Staufen and related double-stranded-RNA-	98.83
PRK14718		467	ribonuclease III; Provisional	98.69
PF14709		80	DND1_DSRM: double strand RNA binding domain from D	98.67
COG0571		235	Rnc dsRNA-specific ribonuclease [Transcription]	98.65
PRK12372		413	ribonuclease III; Reviewed	98.62
PF14709		80	DND1_DSRM: double strand RNA binding domain from D	98.34
KOG1817		533	consensus Ribonuclease [RNA processing and modific	97.84
TIGR01489		188	DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent	97.8
TIGR02253		221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	97.76
KOG2777		542	consensus tRNA-specific adenosine deaminase 1 [RNA	97.69
KOG2832		393	consensus TFIIF-interacting CTD phosphatase, inclu	97.68
PF13419		176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	97.64
PLN02770		248	haloacid dehalogenase-like hydrolase family protei	97.64
TIGR03351		220	PhnX-like phosphonatase-like hydrolase. This clade	97.56
TIGR01685		174	MDP-1 magnesium-dependent phosphatase-1. This mode	97.56
TIGR01449		213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	97.54
TIGR01993		184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	97.5
TIGR01509		183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	97.48
TIGR01454		205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	97.47
PRK13288		214	pyrophosphatase PpaX; Provisional	97.42
PLN03243		260	haloacid dehalogenase-like hydrolase; Provisional	97.42
TIGR01548		197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	97.38
TIGR01488		177	HAD-SF-IB Haloacid Dehalogenase superfamily, subfa	97.37
PLN02575		381	haloacid dehalogenase-like hydrolase	97.34
PRK10826		222	2-deoxyglucose-6-phosphatase; Provisional	97.28
PRK13225		273	phosphoglycolate phosphatase; Provisional	97.27
PRK13223		272	phosphoglycolate phosphatase; Provisional	97.25
COG5190		390	FCP1 TFIIF-interacting CTD phosphatases, including	97.23
PRK13226		229	phosphoglycolate phosphatase; Provisional	97.23
cd01427		139	HAD_like Haloacid dehalogenase-like hydrolases. Th	97.22
TIGR01549		154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	97.21
TIGR00338		219	serB phosphoserine phosphatase SerB. Phosphoserine	97.21
PRK13222		226	phosphoglycolate phosphatase; Provisional	97.21
TIGR01491		201	HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa	97.21
KOG3792		816	consensus Transcription factor NFAT, subunit NF90	97.18
TIGR01428		198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	97.15
PLN02954		224	phosphoserine phosphatase	97.15
TIGR02252		203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	97.12
PRK11587		218	putative phosphatase; Provisional	97.11
PLN02940		382	riboflavin kinase	97.11
TIGR01422		253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	97.06
COG0546		220	Gph Predicted phosphatases [General function predi	97.02
KOG3769		333	consensus Ribonuclease III domain proteins [Transl	97.0
TIGR01990		185	bPGM beta-phosphoglucomutase. The enzyme from L. l	96.97
PRK10563		221	6-phosphogluconate phosphatase; Provisional	96.78
PRK10725		188	fructose-1-P/6-phosphogluconate phosphatase; Provi	96.77
COG1011		229	Predicted hydrolase (HAD superfamily) [General fun	96.76
PRK13478		267	phosphonoacetaldehyde hydrolase; Provisional	96.74
TIGR01533		266	lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil	96.58
PRK09552		219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	96.52
KOG4334		650	consensus Uncharacterized conserved protein, conta	96.48
TIGR02247		211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	96.48
TIGR03333		214	salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl	96.44
PRK13582		205	thrH phosphoserine phosphatase; Provisional	96.36
PHA02597		197	30.2 hypothetical protein; Provisional	96.33
TIGR01672		237	AphA HAD superfamily (subfamily IIIB) phosphatase,	96.16
KOG3769		333	consensus Ribonuclease III domain proteins [Transl	96.14
PHA03398		303	viral phosphatase superfamily protein; Provisional	95.99
COG4996		164	Predicted phosphatase [General function prediction	95.91
TIGR01684		301	viral_ppase viral phosphatase. These proteins also	95.89
PRK09456		199	?-D-glucose-1-phosphatase; Provisional	95.88
TIGR02137		203	HSK-PSP phosphoserine phosphatase/homoserine phosp	95.31
PLN02919		1057	haloacid dehalogenase-like hydrolase family protei	95.26
PRK10748		238	flavin mononucleotide phosphatase; Provisional	95.19
COG0560		212	SerB Phosphoserine phosphatase [Amino acid transpo	95.13
PRK08238		479	hypothetical protein; Validated	95.07
KOG0323		635	consensus TFIIF-interacting CTD phosphatases, incl	95.03
TIGR01664		166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	94.97
KOG1817		533	consensus Ribonuclease [RNA processing and modific	94.81
TIGR01686		320	FkbH FkbH-like domain. The C-terminal portion of t	94.67
PRK11133		322	serB phosphoserine phosphatase; Provisional	94.59
PF06888		234	Put_Phosphatase: Putative Phosphatase; InterPro: I	94.58
PRK11009		237	aphA acid phosphatase/phosphotransferase; Provisio	94.55
KOG3109		244	consensus Haloacid dehalogenase-like hydrolase [Ge	94.5
TIGR01490		202	HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol	94.31
COG0637		221	Predicted phosphatase/phosphohexomutase [General f	94.21
TIGR01681		128	HAD-SF-IIIC HAD-superfamily phosphatase, subfamily	94.21
TIGR02254		224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	94.11
PRK11590		211	hypothetical protein; Provisional	94.05
PRK14988		224	GMP/IMP nucleotidase; Provisional	93.66
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	93.48
PF03368		90	Dicer_dimer: Dicer dimerisation domain; InterPro:	93.45
PRK09449		224	dUMP phosphatase; Provisional	91.95
PF05152		297	DUF705: Protein of unknown function (DUF705); Inte	91.03
PF14954		252	LIX1: Limb expression 1	90.54
TIGR02009		185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	90.0
PRK06698		459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	89.95
TIGR01691		220	enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen	89.09
TIGR01675		229	plant-AP plant acid phosphatase. This model explic	88.37
TIGR01261		161	hisB_Nterm histidinol-phosphatase. This model desc	86.64
PLN02779		286	haloacid dehalogenase-like hydrolase family protei	86.14
KOG3120		256	consensus Predicted haloacid dehalogenase-like hyd	85.89
PF03368		90	Dicer_dimer: Dicer dimerisation domain; InterPro:	85.62
TIGR01670		154	YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho	85.56
TIGR00099		256	Cof-subfamily Cof subfamily of IIB subfamily of ha	84.11
TIGR01493		175	HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su	82.5
PLN02811		220	hydrolase	80.15

>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]	Back alignment and domain information

Probab=100.00  E-value=6.2e-61  Score=548.95  Aligned_cols=537  Identities=27%  Similarity=0.347  Sum_probs=433.7

Q ss_pred             cccceEEEeecCCcCCCCcchhhhhcccCceeEeeccCCCc--cHHHHHHHHHhhhcccceEeecCCCceeEEEEeeecC
Q 002537           36 VFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSD--NIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRN  113 (911)
Q Consensus        36 ~~~~~~i~~~~~~~e~~~pl~~lh~ia~~~~~~~~~~~~~~--~~~l~~lh~~c~~e~ktav~~~~~~~elhlva~~s~~  113 (911)
                      +..++++.+||...|+|++++++.+++.++++++.+++-..  +..+...|+.|..+.++|||..+ .++.|+|||.+..
T Consensus         5 ~~~~~~~~~~~~~~e~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~e~~~v~~~-~~~~~~v~~~~~~   83 (635)
T KOG0323|consen    5 PGPEERREAFSIVIERSPDLAELTALASGASDGVLESSDDSLVEKDLESFVAICRSKVEGAVVLLG-RDLEKKVALISGV   83 (635)
T ss_pred             CCCcchhhhhhhhhccCcchhhhhhhhhhccccccccccccchhhcccchhheecccccchhhccc-cchhhhhcccccc
Confidence            44459999999999999999999999999999999988554  77789999999999999999999 8899999999998


Q ss_pred             CCCCccEEEEEeeccchhhHHHHHhhccceeEEEeCCcceeecccccchHHHHHHHHhhhccCCCchhhhhhHHHHHHhh
Q 002537          114 NEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQ  193 (911)
Q Consensus       114 ~~~~~p~F~~~~v~~~~y~~~~~ll~~r~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~~~~dP~~~~~~~~e~kr~q  193 (911)
                      -.. ++|||+|.|..|+|+.|+.+|+.+|...++||++|++.+++|.+|.++|.+...||.+..           +++++
T Consensus        84 ~~~-~~~C~H~~v~~GlC~~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------L~lv~  151 (635)
T KOG0323|consen   84 SSS-TSCCEHFTVFGGLCASCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKK-----------LHLVL  151 (635)
T ss_pred             ccc-cCCccceeecccHHHHHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhhc-----------ceeeh
Confidence            644 799999999999999999999999999999999999999999999999999999997664           78889


Q ss_pred             hhHHHHHHhhhcCccccCCeEEEeecccccCCCCcccccccceeeccccceeeeecCCCCCCceEEEeeCcChhhHHHHH
Q 002537          194 DDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYL  273 (911)
Q Consensus       194 ~D~~lL~q~~~~d~v~~~G~~~~~q~E~~~~~~d~~~~~~rpvirl~~~n~~ltrI~P~~r~~~~~vKLRPgv~eLr~FL  273 (911)
                      ++...|.+|+..+.+..+++-.+.+.+.+                  ..|..+++|+|..+.++|||||||||++   ||
T Consensus       152 Dld~tllh~~~~~~l~e~~~~l~~~~~~~------------------~sn~dl~~~~~~~~~~~~~vKlRP~~~e---fL  210 (635)
T KOG0323|consen  152 DLDHTLLHTILKSDLSETEKYLKEEAESV------------------ESNKDLFRFNPLGHDTEYLVKLRPFVHE---FL  210 (635)
T ss_pred             hhhhHHHHhhccchhhhhhhhcccccccc------------------cccccceeecccCCCceEEEEeCccHHH---HH
Confidence            99999999999999998888887777664                  3477899999999999999999999999   99


Q ss_pred             hhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccCCCceEeccCC---CccchhhhccCCCCCCcEEEEEcCCcc
Q 002537          274 TARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSLFNVFQDGTCHPKMALVIDDRLK  350 (911)
Q Consensus       274 ~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisresg---~~KsL~~lfp~~~~~~~mvVIIDDR~d  350 (911)
                      + +++++|||||||||+|+||++||+||||+|.||+     +|||||+++   ..++|..+||   |+++||||||||.+
T Consensus       211 ~-~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~-----dRIisrde~~~~kt~dL~~~~p---~g~smvvIIDDr~d  281 (635)
T KOG0323|consen  211 K-EANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFG-----DRIISRDESPFFKTLDLVLLFP---CGDSMVVIIDDRSD  281 (635)
T ss_pred             H-HHHhhceeEEEeccchHHHHHHHHHhCCCCcccc-----ceEEEecCCCcccccccccCCC---CCCccEEEEeCccc
Confidence            9 9999999999999999999999999999999999     999999765   3466666777   99999999999999


Q ss_pred             cCCCCCCCCeEEeccccCccCchhhhcccCchHHHHHHHHhhhcccchhchhhhhhhccccccccCcCCCCCCCCCcccc
Q 002537          351 VWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNY  430 (911)
Q Consensus       351 VW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh~~FF~~~D~~l~~ri~ev~~e~~~~~~~~~pDV~n~  430 (911)
                      ||+++++ |+++|.+|.||.....-.+.  +.++.+++++|.++++||+++|+.+..+|.++-|+++-.+.+..+++   
T Consensus       282 VW~~~~~-nLI~i~~y~yF~~~gd~nap--~~~~~~~~~~~~~~~~~~k~~~~s~~~~~~~~~~~~~~~~~~~~~~~---  355 (635)
T KOG0323|consen  282 VWPDHKR-NLIQIAPYPYFSGQGDINAP--PPLHVLRNVACSVRGAFFKEFDPSLKSRISEVRYEDDDESNPTSYSV---  355 (635)
T ss_pred             cccCCCc-ceEEeeeeecccCcccccCC--cccccccchhcccccccccccCcccccccccccccccccccCccccc---
Confidence            9999965 67789999877654332222  78999999999999999999999999999999999999999999999   


Q ss_pred             eeccccccccCCCCCcccCCCcchHHHHHHHHHhhhhcccccccccccCCCCCCCcccccCCCCCCccCCCCcccccccc
Q 002537          431 LVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAVANLDPRLAPFQYTMPSSSSTTTLPTSQAAVMPLAN  510 (911)
Q Consensus       431 ~~~e~~~~~~~g~~~~~~~~gm~~~everrl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~p~~~~~~~~n  510 (911)
                              -++||.+++.+|||.+.                                     +| +.             
T Consensus       356 --------~~~~~~~p~~~~~~~~~-------------------------------------~~-~~-------------  376 (635)
T KOG0323|consen  356 --------ELSANPGPLKQDGMDEF-------------------------------------VP-EE-------------  376 (635)
T ss_pred             --------ccccccCcccccccccc-------------------------------------cc-cc-------------
Confidence                    48899998899999876                                     00 00             


Q ss_pred             cCCCCCccccccccccCCCCCCcCCCcccccCCCCCCCCChhhhhhhhhhccCCCcCCCCCCCCCCCCCCCccccCCccC
Q 002537          511 MQFPPATSLVKPLGHVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQVSVPRVP  590 (911)
Q Consensus       511 ~~~p~~~~~~~~~~~~~~~~psl~~sP~reegevpe~eld~dtrrrllilqhgqD~r~~~~~~pp~~~r~p~q~s~~~v~  590 (911)
                                                                                                      
T Consensus       377 --------------------------------------------------------------------------------  376 (635)
T KOG0323|consen  377 --------------------------------------------------------------------------------  376 (635)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCccccccccCccccCCCCCCCCCCCccccc-cccCCCCCCCCCCCCCCCCCCCC-ccccccCCchhccchhhhhccc
Q 002537          591 SRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQ-IEKHRPPHPSFFPKIENPSTSDR-PHENQRMPKEALRRDDRLRLNH  668 (911)
Q Consensus       591 ~~g~w~~veeem~~~~~nr~~~~~~p~~~~~~~-~~k~~~~~ps~~~~~~~~~~sdr-~~~~q~~p~~~~~~~~~~~~n~  668 (911)
                             +.+++.+.+..+..+.+.+.++...+ ..+..+-|+.||.+.+  ...+. .+.+-|.......+.....-|-
T Consensus       377 -------~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~~~~--~~~e~~~~~Dvr~~i~~~~~~v~~~~~~  447 (635)
T KOG0323|consen  377 -------NAPEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFAKYD--EVEETLESPDVRLLIPELRTKVLKGSQI  447 (635)
T ss_pred             -------cchhhcccccccccccccccchhHHHHhhhhcccchhhhhccc--cccccccCCChhhhhhhhhhHHhhccce
Confidence                   01111111111111222222333334 3445778999999866  33333 5555555555555555555566


Q ss_pred             CCCCCCCCCCCCcCcccCCCCCCCccccCCccCCCCCCchHHHHHHHHhcCCCeEEEEeeecCCCceEEEEEEECCEEEE
Q 002537          669 TLSDYQSFSGEEIPLSRSSSSSRDVDFESGRDVSSTETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEAWFAGEKIG  748 (911)
Q Consensus       669 ~~~~~~~f~~~~~~~~~~ss~~~~~~~~~~~~~~~~~n~KT~LQE~~Qk~~~~~~Y~~v~~~~Hd~~FtveV~I~Ge~~G  748 (911)
                      ..|+-+|+.....+      +......-+-+....+.+..-.++.++.+++....|+......-.-.|...+|--.+++|
T Consensus       448 vfSg~~P~~~~~~~------s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~~~a~~~~~~~Vv~~~wl~~~~e~w~  521 (635)
T KOG0323|consen  448 VFSGLHPTGSTDES------ADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKVYKAVVSGSAKVVNAAWLWRSLEKWG  521 (635)
T ss_pred             eecccccCcCCcch------hhhhhhhhcccceecccccchhhhHHhhccCcceeeccccccceeEechhHHHHHHHHhc
Confidence            66777776654333      122222223335567788899999999999998888865544445578888888899999


Q ss_pred             EeecCCHHHHHHHHHHHHHHHHHhhhc
Q 002537          749 EGIGRTRREAQRQAAEGSIKHLANVYM  775 (911)
Q Consensus       749 ~G~GkSKKEAEq~AAk~AL~~L~~~~~  775 (911)
                      .|.++.++.+-..+|....+.+...+.
T Consensus       522 ~v~ek~~~l~~~~~~~~~~~~~a~~~~  548 (635)
T KOG0323|consen  522 KVEEKLEPLDDDQRAAIRRESLARLYE  548 (635)
T ss_pred             chhcccccccccccchhcccchhhhhh
Confidence            999999999999998888777765444

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain	Back alignment and domain information

>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]	Back alignment and domain information

>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain	Back alignment and domain information

>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear	Back alignment and domain information

>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional	Back alignment and domain information

>smart00577 CPDc catalytic domain of ctd-like phosphatases	Back alignment and domain information

>PHA03103 double-strand RNA-binding protein; Provisional	Back alignment and domain information

>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]	Back alignment and domain information

>smart00358 DSRM Double-stranded RNA binding motif	Back alignment and domain information

>cd00048 DSRM Double-stranded RNA binding motif	Back alignment and domain information

>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []	Back alignment and domain information

>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []	Back alignment and domain information

>smart00358 DSRM Double-stranded RNA binding motif	Back alignment and domain information

>PRK12371 ribonuclease III; Reviewed	Back alignment and domain information

>cd00048 DSRM Double-stranded RNA binding motif	Back alignment and domain information

>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]	Back alignment and domain information

>PHA03103 double-strand RNA-binding protein; Provisional	Back alignment and domain information

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]	Back alignment and domain information

>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional	Back alignment and domain information

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]	Back alignment and domain information

>PRK14718 ribonuclease III; Provisional	Back alignment and domain information

>PRK12372 ribonuclease III; Reviewed	Back alignment and domain information

>PRK00102 rnc ribonuclease III; Reviewed	Back alignment and domain information

>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245	Back alignment and domain information

>TIGR02191 RNaseIII ribonuclease III, bacterial	Back alignment and domain information

>TIGR02191 RNaseIII ribonuclease III, bacterial	Back alignment and domain information

>PRK00102 rnc ribonuclease III; Reviewed	Back alignment and domain information

>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]	Back alignment and domain information

>PRK12371 ribonuclease III; Reviewed	Back alignment and domain information

>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]	Back alignment and domain information

>PRK14718 ribonuclease III; Provisional	Back alignment and domain information

>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1	Back alignment and domain information

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]	Back alignment and domain information

>PRK12372 ribonuclease III; Reviewed	Back alignment and domain information

>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1	Back alignment and domain information

>KOG1817 consensus Ribonuclease [RNA processing and modification]	Back alignment and domain information

>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase	Back alignment and domain information

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253	Back alignment and domain information

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]	Back alignment and domain information

>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]	Back alignment and domain information

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A	Back alignment and domain information

>PLN02770 haloacid dehalogenase-like hydrolase family protein	Back alignment and domain information

>TIGR03351 PhnX-like phosphonatase-like hydrolase	Back alignment and domain information

>TIGR01685 MDP-1 magnesium-dependent phosphatase-1	Back alignment and domain information

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic	Back alignment and domain information

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase	Back alignment and domain information

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED	Back alignment and domain information

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein	Back alignment and domain information

>PRK13288 pyrophosphatase PpaX; Provisional	Back alignment and domain information

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional	Back alignment and domain information

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548	Back alignment and domain information

>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like	Back alignment and domain information

>PLN02575 haloacid dehalogenase-like hydrolase	Back alignment and domain information

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional	Back alignment and domain information

>PRK13225 phosphoglycolate phosphatase; Provisional	Back alignment and domain information

>PRK13223 phosphoglycolate phosphatase; Provisional	Back alignment and domain information

>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]	Back alignment and domain information

>PRK13226 phosphoglycolate phosphatase; Provisional	Back alignment and domain information

>cd01427 HAD_like Haloacid dehalogenase-like hydrolases	Back alignment and domain information

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E	Back alignment and domain information

>TIGR00338 serB phosphoserine phosphatase SerB	Back alignment and domain information

>PRK13222 phosphoglycolate phosphatase; Provisional	Back alignment and domain information

>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal	Back alignment and domain information

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]	Back alignment and domain information

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II	Back alignment and domain information

>PLN02954 phosphoserine phosphatase	Back alignment and domain information

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase	Back alignment and domain information

>PRK11587 putative phosphatase; Provisional	Back alignment and domain information

>PLN02940 riboflavin kinase	Back alignment and domain information

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase	Back alignment and domain information

>COG0546 Gph Predicted phosphatases [General function prediction only]	Back alignment and domain information

>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR01990 bPGM beta-phosphoglucomutase	Back alignment and domain information

>PRK10563 6-phosphogluconate phosphatase; Provisional	Back alignment and domain information

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional	Back alignment and domain information

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]	Back alignment and domain information

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional	Back alignment and domain information

>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family	Back alignment and domain information

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed	Back alignment and domain information

>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]	Back alignment and domain information

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase	Back alignment and domain information

>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase	Back alignment and domain information

>PRK13582 thrH phosphoserine phosphatase; Provisional	Back alignment and domain information

>PHA02597 30	Back alignment and domain information

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672	Back alignment and domain information

>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PHA03398 viral phosphatase superfamily protein; Provisional	Back alignment and domain information

>COG4996 Predicted phosphatase [General function prediction only]	Back alignment and domain information

>TIGR01684 viral_ppase viral phosphatase	Back alignment and domain information

>PRK09456 ?-D-glucose-1-phosphatase; Provisional	Back alignment and domain information

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein	Back alignment and domain information

>PLN02919 haloacid dehalogenase-like hydrolase family protein	Back alignment and domain information

>PRK10748 flavin mononucleotide phosphatase; Provisional	Back alignment and domain information

>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK08238 hypothetical protein; Validated	Back alignment and domain information

>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]	Back alignment and domain information

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase	Back alignment and domain information

>KOG1817 consensus Ribonuclease [RNA processing and modification]	Back alignment and domain information

>TIGR01686 FkbH FkbH-like domain	Back alignment and domain information

>PRK11133 serB phosphoserine phosphatase; Provisional	Back alignment and domain information

>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []	Back alignment and domain information

>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional	Back alignment and domain information

>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]	Back alignment and domain information

>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490	Back alignment and domain information

>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]	Back alignment and domain information

>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC	Back alignment and domain information

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254	Back alignment and domain information

>PRK11590 hypothetical protein; Provisional	Back alignment and domain information

>PRK14988 GMP/IMP nucleotidase; Provisional	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases	Back alignment and domain information

>PRK09449 dUMP phosphatase; Provisional	Back alignment and domain information

>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins	Back alignment and domain information

>PF14954 LIX1: Limb expression 1	Back alignment and domain information

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase	Back alignment and domain information

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated	Back alignment and domain information

>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase	Back alignment and domain information

>TIGR01675 plant-AP plant acid phosphatase	Back alignment and domain information

>TIGR01261 hisB_Nterm histidinol-phosphatase	Back alignment and domain information

>PLN02779 haloacid dehalogenase-like hydrolase family protein	Back alignment and domain information

>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]	Back alignment and domain information

>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases	Back alignment and domain information

>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family	Back alignment and domain information

>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily	Back alignment and domain information

>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase	Back alignment and domain information

>PLN02811 hydrolase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		911
3ef1_A		442	The Structure Of Fcp1, An Essential Rna Polymerase		4e-04
3ef0_A		372	The Structure Of Fcp1, An Essential Rna Polymerase		7e-04

>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 442

Back alignment and structure

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 11/76 (14%)
Query: 281 FEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK-SGS--RKSLFNVFQDGTC 337
           +E+++ TM  + YA E+ +++DP   L       DR++    SGS  +KSL  +F    C
Sbjct: 99  YELHIYTMGTKAYAKEVAKIIDPTGKLFQ-----DRVLSRDDSGSLAQKSLRRLF---PC 150
Query: 338 HPKMALVIDDRLKVWD 353
              M +VIDDR  VWD
Sbjct: 151 DTSMVVVIDDRGDVWD 166

PyMOL of 3ef1

>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 372

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		911
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3ef1_A		442	RNA polymerase II subunit A C-terminal domain phos	1e-08
3ef0_A		372	RNA polymerase II subunit A C-terminal domain phos	6e-07
1x49_A		97	Interferon-induced, double-stranded RNA- activated	1e-06
1ekz_A		76	DSRBDIII, maternal effect protein (staufen); struc	8e-06
1qu6_A		179	Protein kinase PKR; dsRNA-binding domain, solution	1e-05
1qu6_A		179	Protein kinase PKR; dsRNA-binding domain, solution	1e-04
2khx_A		85	Ribonuclease 3; drosha, RNA binding domain, hydrol	2e-05
2dix_A		84	Interferon-inducible double stranded RNA- dependen	7e-05
3adj_A		76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	2e-04
1o0w_A		252	Ribonuclease III, RNAse III; TM1102, structural ge	3e-04
3n3w_A		248	Ribonuclease III; nuclease domain, ribonuclase III	3e-04
2a11_A		242	Ribonuclease III, RNAse III; nuclease domain, stru	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 78.7 bits (193), Expect = 5e-15
 Identities = 93/709 (13%), Positives = 190/709 (26%), Gaps = 243/709 (34%)

Query: 161 SFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQDDKNILKQYAENDQV----------NE 210
            ++D +           D + +  M   +   ++  +I+                    E
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76

Query: 211 NGKVIKVQSEVVPALSDSHQALVRPL-IRLQEKNIILTR----INPQIRDTSVLV----- 260
                 VQ  V   L  +++ L+ P+    ++ +++        +    D  V       
Sbjct: 77  EM----VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132

Query: 261 RLRPAWEDLRSYLTARGRKRFEVYVCTM---------AE--RDYALEM-------W---- 298
           RL+P  + LR  L    R    V +  +          +    Y ++        W    
Sbjct: 133 RLQPYLK-LRQALL-ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 299 RLLDPESNLINTKELLDRIVC-------------VKSGSRKSLFNVFQDGTCHPKMALVI 345
               PE+ L   ++LL +I               ++  S ++          +    LV+
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 346 DDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIAC-------------- 391
            +   V + K         AF          N +  +L   R                  
Sbjct: 251 LN---VQNAK------AWNAF----------NLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 392 -NVRGGFFKEFDEGLLQRIPEISYED---DVKDIPSPPDVSNYLVSE---DDAATANGIK 444
            +       +  + LL +  +   +D   +V    +P  +S  +++E   D  AT +  K
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLS--IIAESIRDGLATWDNWK 348

Query: 445 DPLSFDGMADAEVERRLKEAIAASATISSAVANLDPRLAPFQYTMPSSSSTTTLPTSQAA 504
             ++ D         +L   I +S      +  L+P      +          L     +
Sbjct: 349 H-VNCD---------KLTTIIESS------LNVLEPAEYRKMFDR--------L-----S 379

Query: 505 VMPLANMQFPPATSLVKPLGHVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQ--- 561
           V       FPP             P   L               ++   +  L+  Q   
Sbjct: 380 V-------FPP---------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 562 -----HG--MDTRENAPSEAPFPARTQMQVSVPRVPSRGSWFPVEEEMSPRQLNRAVPKE 614
                    ++ +    +E        +  S+           V+    P+  +     +
Sbjct: 424 STISIPSIYLELKVKLENEY------ALHRSI-----------VDHYNIPKTFD---SDD 463

Query: 615 FPLNSEAMQIEKHRPPH---------PSFFPKIENPSTSDRPHENQRMPKEALRRDD--- 662
                       H   H          + F  +           + R  ++ +R D    
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV---------FLDFRFLEQKIRHDSTAW 514

Query: 663 --RLRLNHTLSD---YQSFSGEEIPLSRSSSSSRDVDFESGRDVSSTETPSGVLQDIAMK 717
                + +TL     Y+ +  +  P            +E  R V++       + D   K
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDP-----------KYE--RLVNA-------ILDFLPK 554

Query: 718 CGTKVEFRPALVASTE---LQFSIEAWFAGEKIGEGIGRTRREAQRQAA 763
                     L+ S     L+ ++      E I E       EA +Q  
Sbjct: 555 IEEN------LICSKYTDLLRIALM--AEDEAIFE-------EAHKQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442	Back alignment and structure

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Length = 372	Back alignment and structure

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97	Back alignment and structure

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76	Back alignment and structure

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179	Back alignment and structure

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179	Back alignment and structure

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85	Back alignment and structure

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84	Back alignment and structure

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76	Back alignment and structure

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252	Back alignment and structure

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248	Back alignment and structure

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		911
d1o0wa2		69	d.50.1.1 (A:168-236) RNase III, C-terminal domain	2e-04
d1ta0a_		181	c.108.1.16 (A:) Carboxy-terminal domain RNA polyme	3e-04
d1whna_		128	d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like,	0.002

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 735 QFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHL 770
            F +E    G+ I  G GRT++EA+++AA  + + L
Sbjct: 33  IFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL 68

PyMOL of d1o0wa2

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 181	Back information, alignment and structure

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		911
d1ta0a_		181	Carboxy-terminal domain RNA polymerase II polypept	99.88
d1qu6a1		90	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.67
d1qu6a2		89	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.67
d1x48a1		76	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.66
d1whqa_		99	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.66
d1x49a1		85	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.65
d1x48a1		76	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.65
d1qu6a2		89	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.63
d1x47a1		85	Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1o0wa2		69	RNase III, C-terminal domain {Thermotoga maritima	99.62
d1uila_		113	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.62
d1x49a1		85	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.61
d2dixa1		73	Interferon-inducible double stranded RNA-dependent	99.61
d1qu6a1		90	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.6
d1whna_		128	tRNA-dihydrouridine synthase 2-like, Dus2l (231001	99.54
d2cpna1		76	TAR RNA-binding protein 2 {Human (Homo sapiens) [T	99.53
d1uhza_		89	staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10	99.53
d2b7va1		71	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.52
d2nuga2		68	RNase III, C-terminal domain {Aquifex aeolicus [Ta	99.51
d1di2a_		69	Double-stranded RNA-binding protein A, second dsRB	99.5
d2dixa1		73	Interferon-inducible double stranded RNA-dependent	99.48
d1ekza_		76	Staufen, domain III {Fruit fly (Drosophila melanog	99.47
d1ekza_		76	Staufen, domain III {Fruit fly (Drosophila melanog	99.47
d2cpna1		76	TAR RNA-binding protein 2 {Human (Homo sapiens) [T	99.46
d1x47a1		85	Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1uhza_		89	staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10	99.42
d2b7va1		71	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.4
d1o0wa2		69	RNase III, C-terminal domain {Thermotoga maritima	99.39
d1di2a_		69	Double-stranded RNA-binding protein A, second dsRB	99.38
d1uila_		113	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.36
d1t4oa_		81	RNase III, C-terminal domain {Baker's yeast (Sacch	99.31
d1whqa_		99	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.3
d2b7ta1		73	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.28
d1whna_		128	tRNA-dihydrouridine synthase 2-like, Dus2l (231001	99.27
d2b7ta1		73	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.26
d2dmya1		84	Spermatid perinuclear RNA-binding protein {Human (	99.25
d2dmya1		84	Spermatid perinuclear RNA-binding protein {Human (	99.25
d2nuga2		68	RNase III, C-terminal domain {Aquifex aeolicus [Ta	99.23
d1t4oa_		81	RNase III, C-terminal domain {Baker's yeast (Sacch	98.83
d2go7a1		204	Hypothetical protein SP2064 {Streptococcus pneumon	97.48
d1u7pa_		164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	97.44
d2hsza1		224	Phosphoglycolate phosphatase Gph {Haemophilus somn	97.32
d1x42a1		230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	97.2
d2hdoa1		207	Phosphoglycolate phosphatase {Lactobacillus planta	97.07
d2hcfa1		228	Hypothetical protein CT1708 {Chlorobium tepidum [T	96.96
d2ah5a1		210	predicted phosphatase SP0104 {Streptococcus pneumo	96.93
d1swva_		257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	96.59
d2feaa1		226	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	96.42
d1nnla_		217	Phosphoserine phosphatase {Human (Homo sapiens) [T	96.25
d1te2a_		218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	95.66
d2fi1a1		187	Putative hydrolase SP0805 {Streptococcus pneumonia	94.98
d2fdra1		222	Hypothetical protein Atu0790 {Agrobacterium tumefa	93.2
d1cr6a1		222	Epoxide hydrolase, N-terminal domain {Mouse (Mus m	92.03
d1ltqa1		149	Polynucleotide kinase, phosphatase domain {Bacteri	91.9
d2gfha1		247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	91.11
d2b0ca1		197	Putative phosphatase YihX {Escherichia coli [TaxId	89.64
d1zs9a1		253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	85.82
d1o08a_		221	beta-Phosphoglucomutase {Lactococcus lactis [TaxId	85.03
d1zrna_		220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	84.73
d2bdua1		291	Cytosolic 5'-nucleotidase III {Mouse (Mus musculus	83.81

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.6e-23  Score=162.34  Aligned_cols=120  Identities=20%  Similarity=0.141  Sum_probs=90.8

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEC--CCCCCCCHHHHC
Q ss_conf             833899608671667888846113558999994791789999998309999853565677806860--479844433331
Q 002537          255 DTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCV--KSGSRKSLFNVF  332 (911)
Q Consensus       255 ~~~~~vKLRPgv~eLr~FL~a~~sk~FElyVyTmG~R~YA~~I~rlLDP~g~lFg~~~l~~RIisr--esg~~KsL~~if  332 (911)
                      ...+++++|||+.+   ||+ .++++||++|||+|++.||..|++.|||.+.++..-   .|--|.  +.+..|.|..+.
T Consensus        49 ~~~~~v~~RP~l~e---FL~-~l~~~yei~I~Ta~~~~YA~~il~~ldp~~~~~~~~---~r~~c~~~~~~~~KdL~~l~  121 (181)
T d1ta0a_          49 VHQVYVLKRPHVDE---FLQ-RMGELFECVLFTASLAKYADPVADLLDKWGAFRARL---FRESCVFHRGNYVKDLSRLG  121 (181)
T ss_dssp             EEEEEEEECTTHHH---HHH-HHHHHSEEEEECSSCHHHHHHHHHHHCSSCCEEEEE---CGGGSEEETTEEECCGGGSC
T ss_pred             EEEEEEECCCCHHH---HHH-HHHHCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEE---EEEEEEECCCCCCCCHHHCC
T ss_conf             13347863988999---999-998600899983871778999999865277365899---84025522885525275519


Q ss_pred             CCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf             68998996799982983369999999869933666766703332156723899999995300
Q 002537          333 QDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVR  394 (911)
Q Consensus       333 p~~~~~~~mvVIIDDR~dVW~~~~~~~i~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh  394 (911)
                          .+.+.+|||||+.++|.... .|.+.|++|.  .      ...+-.|..++.+|..++
T Consensus       122 ----~~l~~vvivDd~~~~~~~~~-~N~I~I~~f~--~------~~~D~eL~~l~~~L~~l~  170 (181)
T d1ta0a_         122 ----RDLRRVLILDNSPASYVFHP-DNAVPVASWF--D------NMSDTELHDLLPFFEQLS  170 (181)
T ss_dssp             ----SCGGGEEEECSCGGGGTTCG-GGBCCCCCCS--S------CTTCCHHHHHHHHHHHHT
T ss_pred             ----CCHHHEEEECCCHHHHHCCC-CCEEEECCCC--C------CCCCHHHHHHHHHHHHHC
T ss_conf             ----88889388728866640483-4765706768--9------988277999999999976

PyMOL of d1ta0a_

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}	Back information, alignment and structure

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}	Back information, alignment and structure

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}	Back information, alignment and structure

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}	Back information, alignment and structure

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}	Back information, alignment and structure

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}	Back information, alignment and structure

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}	Back information, alignment and structure

>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure