Citrus Sinensis ID: 002549
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 909 | 2.2.26 [Sep-21-2011] | |||||||
| Q5G1S8 | 1440 | Pentatricopeptide repeat- | yes | no | 0.994 | 0.627 | 0.700 | 0.0 | |
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | no | no | 0.917 | 0.75 | 0.234 | 2e-60 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.723 | 0.763 | 0.245 | 3e-59 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.722 | 0.802 | 0.244 | 1e-58 | |
| O64624 | 822 | Pentatricopeptide repeat- | no | no | 0.705 | 0.779 | 0.249 | 1e-53 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.697 | 0.801 | 0.253 | 3e-51 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.920 | 0.763 | 0.215 | 4e-51 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.720 | 0.876 | 0.233 | 2e-47 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.453 | 0.688 | 0.286 | 4e-47 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.399 | 0.395 | 0.282 | 4e-47 |
| >sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2 | Back alignment and function desciption |
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Score = 1321 bits (3420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 640/914 (70%), Positives = 746/914 (81%), Gaps = 10/914 (1%)
Query: 1 MTKLALKRAKDWRERVKFLTDKILGLRENQFVADVLDERSVQMTPTDYCFVVKWVGQVSW 60
M K+AL +AKDWRERVKFLTDKIL L+ NQFVAD+LD R VQMTPTDYCFVVK VGQ SW
Sbjct: 112 MNKVALIKAKDWRERVKFLTDKILSLKSNQFVADILDARLVQMTPTDYCFVVKSVGQESW 171
Query: 61 QRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAM 120
QRALEV+EWLNLRHW SPNARM+A IL VLG+ NQE+LAVE F RAE V D VQVYNAM
Sbjct: 172 QRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAM 231
Query: 121 MGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRS 180
MG+Y+R+G+F K QEL+D MR+RGC PDL+SFNTLINARL+SG + PNL V+LL+ VR S
Sbjct: 232 MGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNS 291
Query: 181 GLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKA 240
GLRPD ITYNT++SACSR+SNL+ A+KV+ D+EAH CQPDLWTYNAMISVYGRCGL +A
Sbjct: 292 GLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEA 351
Query: 241 EQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHM 300
E+LF ELE KGFFPDAVTYNSLLYAFARE N EKVKE+ + M KMGFGKDEMTYNTIIHM
Sbjct: 352 ERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHM 411
Query: 301 YGKQGQHDVALQLYRDMK-LSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKP 359
YGKQGQ D+ALQLY+DMK LSGRNPD +TYTVLIDSLGKAN+ EAA +MSEMLD +KP
Sbjct: 412 YGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKP 471
Query: 360 TLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLY 419
TL+TYSALICGYAKAG R EAE TF CM RSG +PD+LAYSVMLD+ LR NET KA LY
Sbjct: 472 TLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLY 531
Query: 420 QEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYD 479
++M+S+G TP LYE+MI L +EN+ ++I+K +RDM+EL G+N EISS+LVKGEC+D
Sbjct: 532 RDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSVLVKGECFD 591
Query: 480 HAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFI 539
AA L+ AI NG EL+++ LLSIL SY+ SGRH EA EL+EF+K+HAS S +T+A I
Sbjct: 592 LAARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHASGSKRLITEALI 651
Query: 540 IMLCKAQKLDAALEEY-----SNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDM 594
++ CK L AAL+EY + W FG S TMYE+L+H C NE +AEASQVFSD+
Sbjct: 652 VLHCKVNNLSAALDEYFADPCVHGWCFG----SSTMYETLLHCCVANEHYAEASQVFSDL 707
Query: 595 RFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKL 654
R E SE + +SMVV YCK+ FPETAH + +QAE KG F +Y DII+AYG+ KL
Sbjct: 708 RLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKL 767
Query: 655 WQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSING 714
WQKAES+VG LRQ D K WN+L+ AYA GCYERARA+FNTMMRDGPSPTV+SIN
Sbjct: 768 WQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINI 827
Query: 715 LLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAG 774
LL AL VDGRL ELYVV++ELQDM FKISKSSILLMLDAFAR+GNIFEVKKIY MKAAG
Sbjct: 828 LLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAG 887
Query: 775 YFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTI 834
Y PT+ LYR+M L CKGKRVRD E MVSEM+EA FK +L+IWNSMLK+YT IED+KKT+
Sbjct: 888 YLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTV 947
Query: 835 QVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAF 894
QVYQ I+E L+PDE ++NTLIIMYCRD RPEEG LM +MR LGL+PKLDTYKSLISAF
Sbjct: 948 QVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAF 1007
Query: 895 GKQQQLEQAEELLK 908
GKQ+ LEQAE+L +
Sbjct: 1008 GKQKCLEQAEQLFE 1021
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May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 219/935 (23%), Positives = 408/935 (43%), Gaps = 101/935 (10%)
Query: 12 WRERVKFLTDKILGL---RENQFVADVLDE-RSVQMTPTDYCFVV--KWVGQVSWQRALE 65
+R ++ + ++GL R+ V +L E ++ + P Y F + + +G+ + E
Sbjct: 219 FRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAG--KINE 276
Query: 66 VYEWLNLR--HWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQV-YNAMMG 122
YE L P+ ++ L A + + A E F + ++ +V Y ++
Sbjct: 277 AYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLD 336
Query: 123 IYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLG--VDLLNEVRRS 180
++ N V++ M K G PD+V+F L++A ++G N G D L+ +R
Sbjct: 337 RFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAG----NFGEAFDTLDVMRDQ 392
Query: 181 GLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKA 240
G+ P++ TYNT+I R L++A++++G++E+ +P +TY I YG+ G A
Sbjct: 393 GILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSA 452
Query: 241 EQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHM 300
+ F+++++KG P+ V N+ LY+ A+ G + K+I + +G D +TYN ++
Sbjct: 453 LETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKC 512
Query: 301 YGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPT 360
Y K G+ D A++L +M +G PDV+ LI++L KA+++ EA + M + +KPT
Sbjct: 513 YSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPT 572
Query: 361 LRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQ 420
+ TY+ L+ G K G EA + F M + G P+ + ++ + D + +E A+ +
Sbjct: 573 VVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLF 632
Query: 421 EMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSIL---VKGE- 476
+M+ G PD Y +I L + + +E MK+L + + ++L VK
Sbjct: 633 KMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASL 692
Query: 477 --------------CYDHAA---------EILRSA------------IRNGIELDHEKLL 501
C D A IL A + NGI D + +L
Sbjct: 693 IEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSIL 752
Query: 502 SILSSYNVSGRHLEACELI--EFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAW 559
+ Y+ ++ + +F K + P I L +A ++ A + +
Sbjct: 753 VPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVK 812
Query: 560 GFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKM-DF 618
G T Y L+ + + + E +++ +M + E + + ++ K +
Sbjct: 813 STGCIPDVAT-YNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNV 871
Query: 619 PETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRL-KLWQKAESLVGCLRQRCAPVDRKVW 677
+ D + Y +ID + +L++ + G L C P + ++
Sbjct: 872 DDALDLYYDLMSDRDFS-PTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRP-NCAIY 929
Query: 678 NALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQD 737
N LI + +G + A A+F M+++G P + + + L+ L + GR++E +EL
Sbjct: 930 NILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKEL-- 987
Query: 738 MDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRD 797
K +G P + Y ++ K R+ +
Sbjct: 988 ---------------------------------KESGLNPDVVCYNLIINGLGKSHRLEE 1014
Query: 798 VEAMVSEMKEA-GFKPDLSIWNSMLKLYTGIEDF-KKTIQVYQEIQEADLQPDEDSFNTL 855
+ +EMK + G PDL +NS++ L GI ++ ++Y EIQ A L+P+ +FN L
Sbjct: 1015 ALVLFNEMKTSRGITPDLYTYNSLI-LNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNAL 1073
Query: 856 IIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSL 890
I Y +PE ++ M G P TY+ L
Sbjct: 1074 IRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
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Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (588), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 180/733 (24%), Positives = 321/733 (43%), Gaps = 75/733 (10%)
Query: 16 VKFLTDKILGLRENQFVADVLDERSVQMTPTDYCFVVK-WVGQVSWQRALEVYEWLNLRH 74
V+ L +K+ L +A LD +++ D+ V K + G+ WQR+L +++++ +
Sbjct: 76 VESLINKLSSLPPRGSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQI 135
Query: 75 WFSPNARMLATILAVLGKANQENLAVETFMRAES-AVDDTVQVYNAMMGIYARNGRFQKV 133
W PN + ++++LG+ + +E F S V +V Y A++ Y RNGR++
Sbjct: 136 WCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETS 195
Query: 134 QELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTII 193
ELLD M+ P ++++NT+INA R G L + L E+R G++PDI+TYNT++
Sbjct: 196 LELLDRMKNEKISPSILTYNTVINACARGGLDWEGL-LGLFAEMRHEGIQPDIVTYNTLL 254
Query: 194 SACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFF 253
SAC+ +EA V+ + PDL TY+ ++ +G+ EK L E+ S G
Sbjct: 255 SACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSL 314
Query: 254 PDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQL 313
PD +YN LL A+A+ G++++ + M G + TY+ +++++G+ G++D QL
Sbjct: 315 PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQL 374
Query: 314 YRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAK 373
+ +MK S +PD TY +LI+ G+ E + +M++ +++P + TY +I K
Sbjct: 375 FLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGK 434
Query: 374 AGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQAL 433
G +A K M + I P AY+ +++ F + +A++ + M G P
Sbjct: 435 GGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIET 494
Query: 434 YEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGI 493
+ ++ R G + IL + +GI
Sbjct: 495 FHSLLYSFAR-------------------------------GGLVKESEAILSRLVDSGI 523
Query: 494 ELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALE 553
+ + + + +Y G+ EA + +V S P + L+A L
Sbjct: 524 PRNRDTFNAQIEAYKQGGKFEEAVK--TYVDMEKSRCDP-----------DERTLEAVLS 570
Query: 554 EYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAY 613
YS + L+ C + F +M+ +I PS Y M+ Y
Sbjct: 571 VYS--------------FARLVDECR---------EQFEEMKASDILPSIMCYCMMLAVY 607
Query: 614 CKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD 673
K + + + + ++ + I I Y WQ E ++ L +
Sbjct: 608 GKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLG 667
Query: 674 RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIV-----DGRLNEL 728
+ +NAL+ A G ERA V N + G P + N L+ ++ V G L
Sbjct: 668 IRFYNALLDALWWLGQKERAARVLNEATKRGLFPELFRKNKLVWSVDVHRMSEGGMYTAL 727
Query: 729 YVVIQELQDMDFK 741
V + ++ DM K
Sbjct: 728 SVWLNDINDMLLK 740
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Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 171/700 (24%), Positives = 325/700 (46%), Gaps = 43/700 (6%)
Query: 63 ALEVYEWLNLRHWFSP--NARMLATILAVLGKANQENLAVETFMR-AESAVDDTVQVYNA 119
AL ++W + + + ++A I+++LGK + + A F E V Y +
Sbjct: 154 ALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTS 213
Query: 120 MMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVP-NLGVDLLNEVR 178
++ +A +GR+++ + M + GC+P L+++N ++N + G P N L+ +++
Sbjct: 214 LISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMG--TPWNKITSLVEKMK 271
Query: 179 RSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFE 238
G+ PD TYNT+I+ C R S +EA +V+ +++A D TYNA++ VYG+ +
Sbjct: 272 SDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPK 331
Query: 239 KAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTII 298
+A ++ E+ GF P VTYNSL+ A+AR+G +++ E+ M + G D TY T++
Sbjct: 332 EAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLL 391
Query: 299 HMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVK 358
+ + G+ + A+ ++ +M+ +G P++ T+ I G K +E + E+ +
Sbjct: 392 SGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLS 451
Query: 359 PTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMML 418
P + T++ L+ + + G E F M+R+G P+ ++ ++ + R +AM +
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTV 511
Query: 419 YQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECY 478
Y+ M+ G TPD + Y ++ L R E+ KV+ +M++ G C
Sbjct: 512 YRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMED---------------GRCK 556
Query: 479 DHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACE-LIEFVKQHASESTPPLTQA 537
+ EL + S+L +Y +G+ + L E V E L +
Sbjct: 557 PN-------------ELTY---CSLLHAY-ANGKEIGLMHSLAEEVYSGVIEPRAVLLKT 599
Query: 538 FIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFY 597
+++ K L A +S G FS T S++ + A+A+ V M+
Sbjct: 600 LVLVCSKCDLLPEAERAFSELKERG-FSPDITTLNSMVSIYGRRQMVAKANGVLDYMKER 658
Query: 598 NIEPSEDLYRSMVVAYCK-MDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQ 656
PS Y S++ + + DF ++ + + K P D+ Y +I AY R +
Sbjct: 659 GFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKP--DIISYNTVIYAYCRNTRMR 716
Query: 657 KAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLL 716
A + +R D +N I +YAA +E A V M++ G P ++ N ++
Sbjct: 717 DASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIV 776
Query: 717 QALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFAR 756
R +E + +++L+++D K L +L+ +
Sbjct: 777 DGYCKLNRKDEAKLFVEDLRNLDPHAPKGEDLRLLERIVK 816
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 175/701 (24%), Positives = 308/701 (43%), Gaps = 60/701 (8%)
Query: 36 LDERSVQMTPTDYCFVVKWVGQVS-WQRALEVYEWLNLRH---WFSPNARMLATILAVLG 91
D ++ TD +VK + W+RA+ ++EWL L + +++ + +LG
Sbjct: 127 FDSVKSELLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILG 186
Query: 92 KANQENLAVETFMR---AESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPD 148
+ +Q ++A + + E +D V+ Y ++ Y+R G+++K +L + M++ G P
Sbjct: 187 RESQYSVAAKLLDKIPLQEYLLD--VRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPT 244
Query: 149 LVSFNTLINARLRSG-AMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMK 207
LV++N +++ + G + LGV L+E+R GL+ D T +T++SAC+RE L EA +
Sbjct: 245 LVTYNVILDVFGKMGRSWRKILGV--LDEMRSKGLKFDEFTCSTVLSACAREGLLREAKE 302
Query: 208 VYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFA 267
+ +L++ +P TYNA++ V+G+ G++ +A + KE+E D+VTYN L+ A+
Sbjct: 303 FFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYV 362
Query: 268 REGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVV 327
R G ++ + E M K G + +TY T+I YGK G+ D AL+L+ MK +G P+
Sbjct: 363 RAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTC 422
Query: 328 TYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCM 387
TY ++ LGK ++ +E ++ +M P T++ ++ G + F M
Sbjct: 423 TYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREM 482
Query: 388 RRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKG 447
+ G PD ++ ++ + R A +Y EM GF Y ++ L R+
Sbjct: 483 KSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDW 542
Query: 448 EEIRKVVRDMKELSGINMQEISSILVKGECYDHAA-----EILRSAIRNGIELDHEKLLS 502
V+ DMK G E S L+ +CY E + + I+ G LL
Sbjct: 543 RSGENVISDMKS-KGFKPTETSYSLML-QCYAKGGNYLGIERIENRIKEGQIFPSWMLLR 600
Query: 503 ILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFG 562
L N R L E +AF + K D +
Sbjct: 601 TLLLANFKCRALAGSE-----------------RAFTLFKKHGYKPDMVI---------- 633
Query: 563 FFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETA 622
+ S++ N + +A + +R + P Y S++ Y + A
Sbjct: 634 --------FNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKA 685
Query: 623 HFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIK 682
I EK + DL Y +I + R L Q+A ++ + +R +N +
Sbjct: 686 EEILKTLEKSQLK-PDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVS 744
Query: 683 AYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDG 723
Y A G + V M ++ P N L ++VDG
Sbjct: 745 GYTAMGMFAEIEDVIECMAKNDCRP-----NELTFKMVVDG 780
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (518), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 165/652 (25%), Positives = 292/652 (44%), Gaps = 18/652 (2%)
Query: 99 AVETFMRAESAVDDTVQ----VYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNT 154
AV + R A D V Y ++G R GR L + K+G D ++F
Sbjct: 68 AVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTP 127
Query: 155 LINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVY---GD 211
L+ + + +L + G P++ +YN ++ E+ +EA+++ D
Sbjct: 128 LLKGLCADKRTSDAMDI-VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMAD 186
Query: 212 LEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGN 271
PD+ +Y +I+ + + G +KA + E+ +G PD VTYNS++ A +
Sbjct: 187 DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQA 246
Query: 272 VEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTV 331
++K E+ M+K G D MTYN+I+H Y GQ A+ + M+ G PDVVTY++
Sbjct: 247 MDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSL 306
Query: 332 LIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSG 391
L+D L K + EA + M +KP + TY L+ GYA G +E M R+G
Sbjct: 307 LMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 366
Query: 392 IRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIR 451
I PDH +S+++ + + + ++AM+++ +M G P+ Y +IG+L + + E+
Sbjct: 367 IHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAM 426
Query: 452 KVVRDMKE--LSGINMQEISSILVKGEC----YDHAAEILRSAIRNGIELDHEKLLSILS 505
M + LS N+ + + L+ G C ++ A E++ + GI L+ SI+
Sbjct: 427 LYFEQMIDEGLSPGNI--VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID 484
Query: 506 SYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFS 565
S+ GR +E+ +L E + + + I C A K+D A++ S G
Sbjct: 485 SHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKP 544
Query: 566 KSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFI 625
+ T Y +LI+ R +A +F +M + P Y ++ + A +
Sbjct: 545 NTVT-YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 603
Query: 626 ADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYA 685
+ + G E LS Y I+ + KL A + L ++ + +N +I A
Sbjct: 604 YVRITESGTQIE-LSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALL 662
Query: 686 ASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQD 737
G + A+ +F +G P + + + +I G L EL + ++D
Sbjct: 663 KVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMED 714
|
Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 204 bits (518), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 191/886 (21%), Positives = 372/886 (41%), Gaps = 49/886 (5%)
Query: 31 FVADVLDERSVQMTPTDYCFVVK-WVGQVSWQRALEVYEWLNLRHWFSPNARMLATILAV 89
F A + R P+ Y +++ ++ + Q +LE++ + L + F+P+ IL
Sbjct: 109 FGALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGL-YGFNPSVYTCNAILGS 167
Query: 90 LGKANQENLAVETFMR--AESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEP 147
+ K+ E+++V +F++ + + V +N ++ + G F+K L+ M K G P
Sbjct: 168 VVKSG-EDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAP 226
Query: 148 DLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMK 207
+V++NT+++ + G ++LL+ ++ G+ D+ TYN +I R + + +
Sbjct: 227 TIVTYNTVLHWYCKKGRF--KAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYL 284
Query: 208 VYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFA 267
+ D+ P+ TYN +I+ + G A QL E+ S G P+ VT+N+L+
Sbjct: 285 LLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHI 344
Query: 268 REGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVV 327
EGN ++ ++ M G E++Y ++ K + D+A Y MK +G +
Sbjct: 345 SEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRI 404
Query: 328 TYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYC- 386
TYT +ID L K + EA +++EM + P + TYSALI G+ K G R + K C
Sbjct: 405 TYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVG-RFKTAKEIVCR 463
Query: 387 MRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENK 446
+ R G+ P+ + YS ++ R +A+ +Y+ M+ G T D + +++ L + K
Sbjct: 464 IYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGK 523
Query: 447 GEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSS 506
E A E +R +GI + +++
Sbjct: 524 VAE-------------------------------AEEFMRCMTSDGILPNTVSFDCLING 552
Query: 507 YNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSK 566
Y SG L+A + + + + T + + LCK L A E++ + +
Sbjct: 553 YGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREA-EKFLKSLHAVPAAV 611
Query: 567 SKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIA 626
MY +L+ + + A+A +F +M +I P Y S++ C+ A A
Sbjct: 612 DTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFA 671
Query: 627 DQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAA 686
+AE +G + +Y +D + W+ + D NA+I Y+
Sbjct: 672 KEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSR 731
Query: 687 SGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQEL---QDMDFKIS 743
G E+ + M P + + N LL ++ +++ + + + K++
Sbjct: 732 MGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLT 791
Query: 744 KSSILLMLDAFARSGNIFEVK-KIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMV 802
S++L + N+ E+ KI G Y + ++ C + +V
Sbjct: 792 CHSLVLGIC----ESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLV 847
Query: 803 SEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRD 862
M G D ++M+ + F+++ V E+ + + P+ + LI CR
Sbjct: 848 KVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRV 907
Query: 863 CRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEELLK 908
+ + EM + P +++ A K + ++A LL+
Sbjct: 908 GDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLR 953
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 172/737 (23%), Positives = 318/737 (43%), Gaps = 82/737 (11%)
Query: 64 LEVYEWLNLRHWFSPNARML-------------ATILA--VLGKANQENLAVETFMRAES 108
L+ W N +F+ + + A ILA V K + A F +
Sbjct: 66 LKFLNWANPHQFFTLRCKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSLQE 125
Query: 109 AVD---DTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAM 165
D T V++ ++ Y+R K ++ L + G P ++S+N +++A +RS
Sbjct: 126 TYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRN 185
Query: 166 VPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYN 225
+ + ++ E+ S + P++ TYN +I N++ A+ ++ +E C P++ TYN
Sbjct: 186 I-SFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYN 244
Query: 226 AMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKM 285
+I Y + + +L + + KG P+ ++YN ++ REG +++V + M +
Sbjct: 245 TLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRR 304
Query: 286 GFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEA 345
G+ DE+TYNT+I Y K+G AL ++ +M G P V+TYT LI S+ KA ++ A
Sbjct: 305 GYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRA 364
Query: 346 ANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDI 405
+ +M + P RTY+ L+ G+++ G EA + M +G P + Y+ +++
Sbjct: 365 MEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALING 424
Query: 406 FLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINM 465
+ A+ + ++M G +PD Y ++ R +E +V R+M E GI
Sbjct: 425 HCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVE-KGIKP 483
Query: 466 QEIS-SILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVK 524
I+ S L++G C R EAC+L E
Sbjct: 484 DTITYSSLIQGFCEQR-------------------------------RTKEACDLYE--- 509
Query: 525 QHASESTPP---LTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYN 581
+ PP A I C L+ AL+ ++ G T Y LI+
Sbjct: 510 EMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVT-YSVLINGLNKQ 568
Query: 582 ERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSI 641
R EA ++ + + PS+ Y +++ ++F I KG + +
Sbjct: 569 SRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLI------KGFCMKGMMT 622
Query: 642 YVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMM 701
D Q ES++G + P D +N +I + +G +A ++ M+
Sbjct: 623 EAD-----------QVFESMLG---KNHKP-DGTAYNIMIHGHCRAGDIRKAYTLYKEMV 667
Query: 702 RDGPSPTVDSINGLLQALIVDGRLNEL-YVVIQELQDMDFKISKSSILLMLDAFARSGNI 760
+ G ++ L++AL +G++NEL V++ L+ + ++ + +L ++ R GN+
Sbjct: 668 KSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVL-VEINHREGNM 726
Query: 761 FEVKKIYHGMKAAGYFP 777
V + M G+ P
Sbjct: 727 DVVLDVLAEMAKDGFLP 743
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 190 bits (483), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 121/423 (28%), Positives = 218/423 (51%), Gaps = 11/423 (2%)
Query: 92 KANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVS 151
KA + N A+ R + D V YN ++ +G+ ++ E+LD M +R C PD+++
Sbjct: 184 KAGEINNALSVLDRMSVSPD--VVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVIT 241
Query: 152 FNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGD 211
+ LI A R + + LL+E+R G PD++TYN +++ +E L+EA+K D
Sbjct: 242 YTILIEATCRDSGV--GHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLND 299
Query: 212 LEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGN 271
+ + CQP++ T+N ++ G + AE+L ++ KGF P VT+N L+ R+G
Sbjct: 300 MPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGL 359
Query: 272 VEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTV 331
+ + +I E M + G + ++YN ++H + K+ + D A++ M G PD+VTY
Sbjct: 360 LGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNT 419
Query: 332 LIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSG 391
++ +L K K+ +A +++++ P L TY+ +I G AKAG +A K MR
Sbjct: 420 MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD 479
Query: 392 IRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALY-EIMIGVLGRENKGEEI 450
++PD + YS ++ R + ++A+ + E G P+ + IM+G+ I
Sbjct: 480 LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAI 539
Query: 451 RKVVRDMKELSGINMQEIS-SILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNV 509
+V + G E S +IL++G Y+ A + A+ EL ++ L+ S+ V
Sbjct: 540 DFLVFMINR--GCKPNETSYTILIEGLAYEGMA---KEALELLNELCNKGLMKKSSAEQV 594
Query: 510 SGR 512
+G+
Sbjct: 595 AGK 597
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 190 bits (483), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 193/365 (52%), Gaps = 2/365 (0%)
Query: 80 ARMLATILAVLGKANQENLAVETFMRA-ESAVDDTVQVYNAMMGIYARNGRFQKVQELLD 138
++ + +++ LG+ + +A F A +TV ++A++ Y R+G ++ + +
Sbjct: 233 GKLASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFN 292
Query: 139 LMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSR 198
M++ G P+LV++N +I+A + G + +E++R+G++PD IT+N++++ CSR
Sbjct: 293 SMKEYGLRPNLVTYNAVIDACGKGGMEFKQV-AKFFDEMQRNGVQPDRITFNSLLAVCSR 351
Query: 199 ESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVT 258
E A ++ ++ + D+++YN ++ + G + A ++ ++ K P+ V+
Sbjct: 352 GGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVS 411
Query: 259 YNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMK 318
Y++++ FA+ G ++ + M +G D ++YNT++ +Y K G+ + AL + R+M
Sbjct: 412 YSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMA 471
Query: 319 LSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRL 378
G DVVTY L+ GK K E V +EM V P L TYS LI GY+K G
Sbjct: 472 SVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYK 531
Query: 379 EAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMI 438
EA + F + +G+R D + YS ++D + A+ L EM G +P+ Y +I
Sbjct: 532 EAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSII 591
Query: 439 GVLGR 443
GR
Sbjct: 592 DAFGR 596
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 909 | ||||||
| 147778634 | 1494 | hypothetical protein VITISV_005527 [Viti | 0.891 | 0.542 | 0.781 | 0.0 | |
| 359490016 | 1442 | PREDICTED: pentatricopeptide repeat-cont | 0.891 | 0.561 | 0.781 | 0.0 | |
| 255557937 | 1429 | pentatricopeptide repeat-containing prot | 0.924 | 0.587 | 0.763 | 0.0 | |
| 224093190 | 1480 | predicted protein [Populus trichocarpa] | 0.997 | 0.612 | 0.758 | 0.0 | |
| 224133034 | 1450 | predicted protein [Populus trichocarpa] | 0.997 | 0.625 | 0.729 | 0.0 | |
| 356540375 | 1476 | PREDICTED: pentatricopeptide repeat-cont | 0.997 | 0.614 | 0.731 | 0.0 | |
| 58013026 | 1429 | chloroplast embryo-defective 1270 [Arabi | 0.994 | 0.632 | 0.700 | 0.0 | |
| 334185431 | 1440 | pentatricopeptide repeat-containing prot | 0.994 | 0.627 | 0.700 | 0.0 | |
| 297834714 | 1429 | EMB1270 [Arabidopsis lyrata subsp. lyrat | 0.994 | 0.632 | 0.696 | 0.0 | |
| 357481229 | 1508 | Pentatricopeptide repeat-containing prot | 0.997 | 0.601 | 0.682 | 0.0 |
| >gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1494 bits (3869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 710/908 (78%), Positives = 799/908 (87%)
Query: 1 MTKLALKRAKDWRERVKFLTDKILGLRENQFVADVLDERSVQMTPTDYCFVVKWVGQVSW 60
MTKLALKRAKDWR+RV+FLTD+ILGL+ +FVADVLD+R VQMTPTD+CFVVKWVGQ SW
Sbjct: 141 MTKLALKRAKDWRQRVQFLTDRILGLKSEEFVADVLDDRKVQMTPTDFCFVVKWVGQSSW 200
Query: 61 QRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAM 120
QRALEVYEWLNLRHW+SPNARMLATIL+VLGKANQE LAVE F RAE+A +TVQVYNAM
Sbjct: 201 QRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAAXGNTVQVYNAM 260
Query: 121 MGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRS 180
MG+YAR GRF KVQELLDLMR RGCEPDLVSFNTLINARL+SG MV NL ++LLNEVRRS
Sbjct: 261 MGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRS 320
Query: 181 GLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKA 240
G++PDIITYNT+ISACSRESNLEEA+KVY D+ AH CQPDLWTYNAMISVYGRCG+ +A
Sbjct: 321 GIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREA 380
Query: 241 EQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHM 300
+LFK+LESKGF PDAVTYNSLLYAFAREGNV+KVKEI E+M+KMGFGKDEMTYNTIIHM
Sbjct: 381 GRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHM 440
Query: 301 YGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPT 360
YGK+GQHD+A QLY DMKLSGR+PD VTYTVLIDSLGKAN I EAA VMSEML+A VKPT
Sbjct: 441 YGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPT 500
Query: 361 LRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQ 420
LRT+SALICGYAKAG R+EAE+TF CM RSGI+PDHLAYSVMLDI LRFNE+ KAM LYQ
Sbjct: 501 LRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQ 560
Query: 421 EMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDH 480
EMV + F PD ALYE+M+ VLG+EN+ E++ KVV+DM+EL G+N Q I SILVKGEC+DH
Sbjct: 561 EMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKGECFDH 620
Query: 481 AAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFII 540
AA +LR AI G ELD E LLSIL SY SGRHLEA EL++F+++H+S S + +A II
Sbjct: 621 AANMLRLAISQGCELDRENLLSILGSYGSSGRHLEARELLDFLREHSSGSHQLINEALII 680
Query: 541 MLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIE 600
MLCKA +L AL EY A FG F S TMYESL+ CE NE FAEASQ+FSDMRFY +E
Sbjct: 681 MLCKAHQLGDALREYGKARDFGLFCGSFTMYESLLLCCEENELFAEASQIFSDMRFYGVE 740
Query: 601 PSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAES 660
PS+ LYRSMVV YCKM FPETAH++ DQAE+KG+ F+D+SI+ +I+AYG+LKLWQKAES
Sbjct: 741 PSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAES 800
Query: 661 LVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALI 720
LVG LRQ+C VDRKVWNALI AYAASGCYERARA+FNTMMRDGPSPTVDS+NGL+QALI
Sbjct: 801 LVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALI 860
Query: 721 VDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMY 780
VDGRL+ELYVVIQELQDM FKISKSSI LMLDAFA +GNIFEVKKIY GMKAAGYFPTM+
Sbjct: 861 VDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMH 920
Query: 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEI 840
LYR+M GL KGKRVRDVEAMVSEM+ A FKPDLSIWNS+LKLYTGI DFKKT QVYQ I
Sbjct: 921 LYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLI 980
Query: 841 QEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQL 900
QEA L+PDED++NTLI+MYCRD RPEEGLSLMHEMR++GLEPKLDTYKSLISAFGK Q +
Sbjct: 981 QEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMV 1040
Query: 901 EQAEELLK 908
EQAEEL +
Sbjct: 1041 EQAEELFE 1048
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1493 bits (3864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 710/908 (78%), Positives = 799/908 (87%)
Query: 1 MTKLALKRAKDWRERVKFLTDKILGLRENQFVADVLDERSVQMTPTDYCFVVKWVGQVSW 60
MTKLALKRAKDWR+RV+FLTD+ILGL+ +FVADVLD+R VQMTPTD+CFVVKWVGQ SW
Sbjct: 109 MTKLALKRAKDWRQRVQFLTDRILGLKSEEFVADVLDDRKVQMTPTDFCFVVKWVGQSSW 168
Query: 61 QRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAM 120
QRALEVYEWLNLRHW+SPNARMLATIL+VLGKANQE LAVE F RAE+A +TVQVYNAM
Sbjct: 169 QRALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAASGNTVQVYNAM 228
Query: 121 MGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRS 180
MG+YAR GRF KVQELLDLMR RGCEPDLVSFNTLINARL+SG MV NL ++LLNEVRRS
Sbjct: 229 MGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRS 288
Query: 181 GLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKA 240
G++PDIITYNT+ISACSRESNLEEA+KVY D+ AH CQPDLWTYNAMISVYGRCG+ +A
Sbjct: 289 GIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREA 348
Query: 241 EQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHM 300
+LFK+LESKGF PDAVTYNSLLYAFAREGNV+KVKEI E+M+KMGFGKDEMTYNTIIHM
Sbjct: 349 GRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHM 408
Query: 301 YGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPT 360
YGK+GQHD+A QLY DMKLSGR+PD VTYTVLIDSLGKAN I EAA VMSEML+A VKPT
Sbjct: 409 YGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPT 468
Query: 361 LRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQ 420
LRT+SALICGYAKAG R+EAE+TF CM RSGI+PDHLAYSVMLDI LRFNE+ KAM LYQ
Sbjct: 469 LRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQ 528
Query: 421 EMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDH 480
EMV + F PD ALYE+M+ VLG+EN+ E++ KVV+DM+EL G+N Q I SILVKGEC+DH
Sbjct: 529 EMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKGECFDH 588
Query: 481 AAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFII 540
AA +LR AI G ELD E LLSIL SY SGRHLEA EL++F+++H+S S + +A II
Sbjct: 589 AANMLRLAISQGCELDRENLLSILGSYGSSGRHLEARELLDFLREHSSGSHQLINEALII 648
Query: 541 MLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIE 600
MLCKA +L AL EY A FG F S TMYESL+ CE NE FAEASQ+FSDMRFY +E
Sbjct: 649 MLCKAHQLGDALREYGKARDFGLFCGSFTMYESLLLCCEENELFAEASQIFSDMRFYGVE 708
Query: 601 PSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAES 660
PS+ LYRSMVV YCKM FPETAH++ DQAE+KG+ F+D+SI+ +I+AYG+LKLWQKAES
Sbjct: 709 PSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAES 768
Query: 661 LVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALI 720
LVG LRQ+C VDRKVWNALI AYAASGCYERARA+FNTMMRDGPSPTVDS+NGL+QALI
Sbjct: 769 LVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALI 828
Query: 721 VDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMY 780
VDGRL+ELYVVIQELQDM FKISKSSI LMLDAFA +GNIFEVKKIY GMKAAGYFPTM+
Sbjct: 829 VDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMH 888
Query: 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEI 840
LYR+M GL KGKRVRDVEAMVSEM+ A FKPDLSIWNS+LKLYTGI DFKKT QVYQ I
Sbjct: 889 LYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLI 948
Query: 841 QEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQL 900
QEA L+PDED++NTLI+MYCRD RPEEGLSLMHEMR++GLEPKLDTYKSLISAFGK Q +
Sbjct: 949 QEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMV 1008
Query: 901 EQAEELLK 908
EQAEEL +
Sbjct: 1009 EQAEELFE 1016
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1448 bits (3749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 693/908 (76%), Positives = 797/908 (87%)
Query: 1 MTKLALKRAKDWRERVKFLTDKILGLRENQFVADVLDERSVQMTPTDYCFVVKWVGQVSW 60
M KLALKRAKDWRERVKFLTD+ILGLR +QFVADVLD+ VQMTPTD+CFVVKWVGQ +W
Sbjct: 97 MNKLALKRAKDWRERVKFLTDRILGLRPDQFVADVLDDSKVQMTPTDFCFVVKWVGQENW 156
Query: 61 QRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAM 120
QRALEV+EWLNLRHW+SPNARMLATILAVLGKANQE LAVE F+RAES VD+TVQVYNAM
Sbjct: 157 QRALEVFEWLNLRHWYSPNARMLATILAVLGKANQEALAVEIFIRAESTVDNTVQVYNAM 216
Query: 121 MGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRS 180
MG+YAR GRF KVQ +LDLMR+RGCEPDLVSFNTLINARL++GAM PN+ ++LLNEVRRS
Sbjct: 217 MGVYARTGRFNKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAMTPNVAIELLNEVRRS 276
Query: 181 GLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKA 240
GLRPDIITYNT+ISACSRESNLEEA+KV+ D+EAH CQPDLWTYNAMISVYGRCG KA
Sbjct: 277 GLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGKA 336
Query: 241 EQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHM 300
EQLFKELESKG+FPDAVTYNSLLYAFAREGNV+KVKEI M++MGF +DEMTYNTIIHM
Sbjct: 337 EQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHM 396
Query: 301 YGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPT 360
YGKQGQH +ALQLYRDMKLSGR PD +TYTVLIDSLGKANK+ EAANVMSEML+ VKPT
Sbjct: 397 YGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPT 456
Query: 361 LRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQ 420
LRTYSALICGYA+AG RLEAE+TF CMRRSGIRPD LAYSVMLD+FLRF+E KAMMLY+
Sbjct: 457 LRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDEATKAMMLYR 516
Query: 421 EMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDH 480
EMV +G TPD +Y M+ LGRENK E+I++++RDM+E+ G+N Q I+SILVKGECY+
Sbjct: 517 EMVRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRDMEEVCGMNPQAIASILVKGECYED 576
Query: 481 AAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFII 540
AA +LR AI E+D E LLSILSSY+ SGR EA +L++F+K H S+S + +A I+
Sbjct: 577 AAGMLRLAISGSDEIDSENLLSILSSYSSSGRQAEALDLLQFLKGHVSKSNQLVAEASIV 636
Query: 541 MLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIE 600
LCKA++LDAAL+EY++ F +F+ S TMYESLI CE NE AEASQ+FSDMRF ++
Sbjct: 637 TLCKAKQLDAALKEYNDTREFDWFTGSCTMYESLIQCCEENEFTAEASQIFSDMRFNGVK 696
Query: 601 PSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAES 660
PS+ LYRSMV+ YCKM FPETAH++ D AE +G+PF+ +SI V +I+ YG+LKLWQKAES
Sbjct: 697 PSKSLYRSMVLMYCKMGFPETAHYLIDLAEIEGMPFDKISIDVAVIETYGKLKLWQKAES 756
Query: 661 LVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALI 720
LVG LRQRC VDRKVWNALI+AYAASGCYE+ARAVFNTMMRDGPSPTVDSINGLLQALI
Sbjct: 757 LVGNLRQRCTNVDRKVWNALIQAYAASGCYEQARAVFNTMMRDGPSPTVDSINGLLQALI 816
Query: 721 VDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMY 780
VDGRL ELYVV QE+QDM F+ISKSSILL+LDAFAR NI E KKIY GMKAAGYFPTM+
Sbjct: 817 VDGRLEELYVVTQEIQDMGFQISKSSILLILDAFARVSNIAEAKKIYQGMKAAGYFPTMH 876
Query: 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEI 840
LYR+M GL CKGKRVRDVEAMV+EM+EAGF+PDLSIWNSML+LYTGI+DF+KT+Q+YQ I
Sbjct: 877 LYRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRI 936
Query: 841 QEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQL 900
+E LQPDED++NTLI+MYCRD RPEEG SLMHEMR++GLEPKLDTYKSLI+AFGKQQ +
Sbjct: 937 KEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLV 996
Query: 901 EQAEELLK 908
AEEL +
Sbjct: 997 VDAEELFE 1004
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa] gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1434 bits (3711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 689/908 (75%), Positives = 794/908 (87%), Gaps = 1/908 (0%)
Query: 1 MTKLALKRAKDWRERVKFLTDKILGLRENQFVADVLDERSVQMTPTDYCFVVKWVGQVSW 60
M KLALKRAKDWRERVK+LTD+ILGL ++QFVADVLD+R VQMTPTD CFVVK VGQ SW
Sbjct: 141 MNKLALKRAKDWRERVKYLTDRILGLTQDQFVADVLDDRKVQMTPTDLCFVVKSVGQESW 200
Query: 61 QRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAM 120
RALEVYEWLNLRHW+SPNARML+TIL+VLGKANQE LAVE FMRAE + +TVQVYNAM
Sbjct: 201 HRALEVYEWLNLRHWYSPNARMLSTILSVLGKANQEALAVEVFMRAEPSAGNTVQVYNAM 260
Query: 121 MGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRS 180
MG+YAR GRF KVQELLDLMR+RGC+PDLVSFNTLINARL++GAM+PNL ++LLNEVRRS
Sbjct: 261 MGVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRRS 320
Query: 181 GLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKA 240
GLRPD ITYNT+ISACSR SNLEEA KV+ D+EAH+CQPDLWTYNAMISVYGRCGL KA
Sbjct: 321 GLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKA 380
Query: 241 EQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHM 300
EQLF +LES+GFFPDAV+YNSLLYAFAREGNVEKVKEI E M+K+GFGKDEMTYNT+IHM
Sbjct: 381 EQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHM 440
Query: 301 YGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPT 360
YGKQGQ+++ALQLYRDM+ SGRNPD VTYTVLIDSLGK NKI+EAA VMSEML+ VKPT
Sbjct: 441 YGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPT 500
Query: 361 LRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQ 420
L+TYSALICGYAKAG +EAE+TF CM RSGIRPDHLAYSVMLDI LRFNE +AM LY+
Sbjct: 501 LKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRFNEPKRAMTLYK 560
Query: 421 EMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDH 480
EM+ +G T D +LYE+M+ L + NK E+I +V+RDM+E+ G+N Q ISSILVKGECYD
Sbjct: 561 EMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRDMEEICGMNTQTISSILVKGECYDE 620
Query: 481 AAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFII 540
AA++LR AI + E+D E LLSILSSY+ SGRH EA +L+EF+K+H+ S+ +T+A ++
Sbjct: 621 AAKMLRRAISDHFEIDRENLLSILSSYSSSGRHAEALDLLEFLKEHSPRSSQMITEALVV 680
Query: 541 MLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIE 600
MLCKAQ+LDAAL+EYSN G F+ S TM+ESLI C NE EASQVFSDMRF I+
Sbjct: 681 MLCKAQQLDAALKEYSNNRELG-FTGSFTMFESLIQCCLENELITEASQVFSDMRFCGIK 739
Query: 601 PSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAES 660
SE LY SMV+ YCKM FPETAH + D AE GI ++S+YV++I+AYGRLKLWQKAES
Sbjct: 740 ASESLYESMVLLYCKMGFPETAHHLIDFAESDGILLNNISLYVNVIEAYGRLKLWQKAES 799
Query: 661 LVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALI 720
+ G LRQRC VDRKVWNALI+AYAASGCYERARA+FNTMMRDGPSPTVD+INGLLQALI
Sbjct: 800 VAGNLRQRCITVDRKVWNALIEAYAASGCYERARAIFNTMMRDGPSPTVDTINGLLQALI 859
Query: 721 VDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMY 780
VDGRL+ELYVV+QELQDM FKISKSSILLMLDAFAR+GNIFEVKKIYHGMKAAGYFPTM+
Sbjct: 860 VDGRLDELYVVVQELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPTMH 919
Query: 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEI 840
LYRVM+ L +GK+VRDVEAM+SEM+EAGFKPDLSIWNS+LK+Y IEDF+KTIQVYQ I
Sbjct: 920 LYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRI 979
Query: 841 QEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQL 900
+E L+PDED++NTLI+MYCRD RPEEG SLMHEMR GLEPKLDTYKSL+++FGKQQ +
Sbjct: 980 KEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLV 1039
Query: 901 EQAEELLK 908
EQAEEL +
Sbjct: 1040 EQAEELFE 1047
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa] gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1390 bits (3597), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 662/908 (72%), Positives = 781/908 (86%), Gaps = 1/908 (0%)
Query: 1 MTKLALKRAKDWRERVKFLTDKILGLRENQFVADVLDERSVQMTPTDYCFVVKWVGQVSW 60
M KLAL++AKDWRERVK+ TD+ILGL+++QFVADVLD+R VQMTPTD+CFVVK VGQ SW
Sbjct: 143 MNKLALRKAKDWRERVKYFTDRILGLKQDQFVADVLDDRKVQMTPTDFCFVVKSVGQESW 202
Query: 61 QRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAM 120
RA EVYEWLNLRHW+SPNARML+TILAVLGKANQE LAVE F RAE +V++TV+VYNAM
Sbjct: 203 HRAFEVYEWLNLRHWYSPNARMLSTILAVLGKANQEPLAVEVFTRAEPSVENTVKVYNAM 262
Query: 121 MGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRS 180
MG+YAR+G+F KVQEL DLMR+RGCEPDLVSFNTLINARL++G M PNL ++LL EVRRS
Sbjct: 263 MGVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLAIELLTEVRRS 322
Query: 181 GLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKA 240
GLRPDIITYNT+ISACSR SNLEEA+ V+ D+ AH+C+PDLWTYNAMISVYGRCGL KA
Sbjct: 323 GLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYGRCGLSGKA 382
Query: 241 EQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHM 300
EQLF +LES+GFFPDAV+YNS LYAFAREGNVEKVK+I E M+K+GFGKDEMTYNT+IHM
Sbjct: 383 EQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHM 442
Query: 301 YGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPT 360
YGKQGQ+D+ALQLYRDMK SGRNPDV+TYTVLIDSLGK NKI EAA +MSEML+ VKPT
Sbjct: 443 YGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPT 502
Query: 361 LRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQ 420
LRTYSALICGYAKAG +EAE+TF CM RSG RPD LAYSVMLDI LRFNE +AM Y+
Sbjct: 503 LRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRFNEPKRAMTFYK 562
Query: 421 EMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDH 480
EM+ +G P+ +LYE+M+ LG NK E+I +VVRDM+E+ G+N Q IS ILVKG+CYD
Sbjct: 563 EMIHDGIMPEHSLYELMLRTLGNANKVEDIGRVVRDMEEVCGMNPQAISYILVKGDCYDE 622
Query: 481 AAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFII 540
AA++LR AI + E+D E LLSILSSY+ SGRH A +L+E +K+H S+ +T+A ++
Sbjct: 623 AAKMLRRAISDRYEIDRENLLSILSSYSSSGRHSVALDLLELLKEHTPRSSQMITEALVV 682
Query: 541 MLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIE 600
MLCKAQ+LD AL+EYSN+ G F+ S TM+E+LI C NE F EASQVFSDMRF I+
Sbjct: 683 MLCKAQQLDTALKEYSNSRELG-FTGSFTMFEALIQCCLENELFTEASQVFSDMRFCGIK 741
Query: 601 PSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAES 660
SE LY+SM++ YCKM FPETAH + D E G ++S+YVD+I+AYGRLKLWQKAES
Sbjct: 742 ASECLYQSMMLLYCKMGFPETAHHLIDLTETDGTVLNNISVYVDVIEAYGRLKLWQKAES 801
Query: 661 LVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALI 720
+ G +RQ C V+RKVWNALI+AYAASGCYERARAVFNTMM+DGPSPTVDSINGLLQALI
Sbjct: 802 VAGNMRQSCITVNRKVWNALIEAYAASGCYERARAVFNTMMKDGPSPTVDSINGLLQALI 861
Query: 721 VDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMY 780
VDGRL ELYVV+QELQD+ FKISKSSILLMLDAFAR+GNIFEVKKIYHGMKAAGYFP+M+
Sbjct: 862 VDGRLEELYVVVQELQDIGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPSMH 921
Query: 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEI 840
LYRVM+ L C+GK+VRDVEAM+SEM+EAGFKPDLSIWNS+LK+Y I+DF+KT Q+YQ I
Sbjct: 922 LYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRI 981
Query: 841 QEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQL 900
+E L+PDED++N LI+MYCRD RP+EGL LM EMR +GLEPKLDTYKSL+++FGKQQ +
Sbjct: 982 KEDGLEPDEDTYNILIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLV 1041
Query: 901 EQAEELLK 908
EQAEEL +
Sbjct: 1042 EQAEELFE 1049
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1376 bits (3561), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 665/909 (73%), Positives = 771/909 (84%), Gaps = 2/909 (0%)
Query: 1 MTKLALKRAKDWRERVKFLTDKILGLRENQFVADVLDERSVQMTPTDYCFVVKWVGQVSW 60
M KLALKR K+WRERVK+LTD IL L+ +FVA VL+ER VQMTPTD+CFVVKWVGQ +W
Sbjct: 136 MNKLALKRDKNWRERVKYLTDTILALKSEEFVAGVLEERRVQMTPTDFCFVVKWVGQQNW 195
Query: 61 QRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAM 120
QRALE+YE LNLRHW++PNARM+ATIL VLGKANQE LAVE F RAES+V DTVQVYNAM
Sbjct: 196 QRALELYECLNLRHWYAPNARMVATILGVLGKANQEALAVEIFARAESSVGDTVQVYNAM 255
Query: 121 MGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRS 180
MG+YARNGRF KV+ELLDLMR+RGC PDLVSFNTLINAR++SGAM PNL + LLNEVRRS
Sbjct: 256 MGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRS 315
Query: 181 GLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKA 240
G+RPDIITYNT+ISACSRESNLEEA+ V+ D+E+H CQPDLWTYNAMISVYGRC KA
Sbjct: 316 GIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKA 375
Query: 241 EQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHM 300
E+LFKELESKGFFPDAVTYNSLLYAF+REGN EKV++I E M+K GFG+DEMTYNTIIHM
Sbjct: 376 EELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHM 435
Query: 301 YGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPT 360
YGKQG+HD A+Q+YRDMK SGRNPD VTYTVLIDSLGKA+K+ EAANVMSEMLDA VKPT
Sbjct: 436 YGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPT 495
Query: 361 LRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQ 420
L TYSALIC YAKAG R EAE+TF CMRRSGI+PD LAYSVMLD FLRFNE KAM LY
Sbjct: 496 LHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYH 555
Query: 421 EMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDH 480
EM+ GFTPD LYE+M+ L REN + + +++RDM+ELSG+N Q ISS+LVKG CYDH
Sbjct: 556 EMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDMEELSGMNPQVISSVLVKGGCYDH 615
Query: 481 AAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFII 540
AA++L+ AI NG ELDHE LSI+SSY+ S R+ EACEL+EF ++HA +T+A II
Sbjct: 616 AAKMLKVAISNGYELDHEIFLSIMSSYSSSARYSEACELLEFSREHAPNDIQMITEALII 675
Query: 541 MLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIE 600
+LCKA+KLDAALEEY + G F +S TMYESLI C NE F ASQ+FSDMRF +E
Sbjct: 676 ILCKAKKLDAALEEYRSKGELGQF-RSCTMYESLIQECIQNELFDVASQIFSDMRFNGVE 734
Query: 601 PSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFE-DLSIYVDIIDAYGRLKLWQKAE 659
SE LY+ MV YC+MD PETAH + AEK GI + D+S+Y+DI++ YG+LK+WQKAE
Sbjct: 735 SSECLYQGMVSVYCRMDLPETAHHLLYHAEKNGIILDNDISVYIDIVETYGKLKIWQKAE 794
Query: 660 SLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQAL 719
SLVG LRQRC+ +DRKVWNALI AYA SGCYERARA+FNTMMRDGPSPTVDS+NGLLQAL
Sbjct: 795 SLVGSLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMRDGPSPTVDSVNGLLQAL 854
Query: 720 IVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTM 779
IVD RLNELYVVIQELQDM KISKSSILL L+AFA++GN+FEV+KIY+GMKAAGYFPTM
Sbjct: 855 IVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFEVQKIYNGMKAAGYFPTM 914
Query: 780 YLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQE 839
++YR+M L CK KRVRDVE M+ EM+EAGF+PDL I NS+LKLY GIEDFK +YQ+
Sbjct: 915 HVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYLGIEDFKSMGIIYQK 974
Query: 840 IQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQ 899
IQ+A L+PDE+++NTLIIMYCRD RPEEG SLM++MR LGLEPKLDTY+SLI+AF KQ+
Sbjct: 975 IQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRM 1034
Query: 900 LEQAEELLK 908
EQAEEL +
Sbjct: 1035 YEQAEELFE 1043
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1321 bits (3420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 640/914 (70%), Positives = 746/914 (81%), Gaps = 10/914 (1%)
Query: 1 MTKLALKRAKDWRERVKFLTDKILGLRENQFVADVLDERSVQMTPTDYCFVVKWVGQVSW 60
M K+AL +AKDWRERVKFLTDKIL L+ NQFVAD+LD R VQMTPTDYCFVVK VGQ SW
Sbjct: 112 MNKVALIKAKDWRERVKFLTDKILSLKSNQFVADILDARLVQMTPTDYCFVVKSVGQESW 171
Query: 61 QRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAM 120
QRALEV+EWLNLRHW SPNARM+A IL VLG+ NQE+LAVE F RAE V D VQVYNAM
Sbjct: 172 QRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAM 231
Query: 121 MGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRS 180
MG+Y+R+G+F K QEL+D MR+RGC PDL+SFNTLINARL+SG + PNL V+LL+ VR S
Sbjct: 232 MGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNS 291
Query: 181 GLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKA 240
GLRPD ITYNT++SACSR+SNL+ A+KV+ D+EAH CQPDLWTYNAMISVYGRCGL +A
Sbjct: 292 GLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEA 351
Query: 241 EQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHM 300
E+LF ELE KGFFPDAVTYNSLLYAFARE N EKVKE+ + M KMGFGKDEMTYNTIIHM
Sbjct: 352 ERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHM 411
Query: 301 YGKQGQHDVALQLYRDMK-LSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKP 359
YGKQGQ D+ALQLY+DMK LSGRNPD +TYTVLIDSLGKAN+ EAA +MSEMLD +KP
Sbjct: 412 YGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKP 471
Query: 360 TLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLY 419
TL+TYSALICGYAKAG R EAE TF CM RSG +PD+LAYSVMLD+ LR NET KA LY
Sbjct: 472 TLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLY 531
Query: 420 QEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYD 479
++M+S+G TP LYE+MI L +EN+ ++I+K +RDM+EL G+N EISS+LVKGEC+D
Sbjct: 532 RDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSVLVKGECFD 591
Query: 480 HAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFI 539
AA L+ AI NG EL+++ LLSIL SY+ SGRH EA EL+EF+K+HAS S +T+A I
Sbjct: 592 LAARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHASGSKRLITEALI 651
Query: 540 IMLCKAQKLDAALEEY-----SNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDM 594
++ CK L AAL+EY + W FG S TMYE+L+H C NE +AEASQVFSD+
Sbjct: 652 VLHCKVNNLSAALDEYFADPCVHGWCFG----SSTMYETLLHCCVANEHYAEASQVFSDL 707
Query: 595 RFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKL 654
R E SE + +SMVV YCK+ FPETAH + +QAE KG F +Y DII+AYG+ KL
Sbjct: 708 RLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKL 767
Query: 655 WQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSING 714
WQKAES+VG LRQ D K WN+L+ AYA GCYERARA+FNTMMRDGPSPTV+SIN
Sbjct: 768 WQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINI 827
Query: 715 LLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAG 774
LL AL VDGRL ELYVV++ELQDM FKISKSSILLMLDAFAR+GNIFEVKKIY MKAAG
Sbjct: 828 LLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAG 887
Query: 775 YFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTI 834
Y PT+ LYR+M L CKGKRVRD E MVSEM+EA FK +L+IWNSMLK+YT IED+KKT+
Sbjct: 888 YLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTV 947
Query: 835 QVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAF 894
QVYQ I+E L+PDE ++NTLIIMYCRD RPEEG LM +MR LGL+PKLDTYKSLISAF
Sbjct: 948 QVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAF 1007
Query: 895 GKQQQLEQAEELLK 908
GKQ+ LEQAE+L +
Sbjct: 1008 GKQKCLEQAEQLFE 1021
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g18110, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 1270; Flags: Precursor gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana] gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1321 bits (3420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 640/914 (70%), Positives = 746/914 (81%), Gaps = 10/914 (1%)
Query: 1 MTKLALKRAKDWRERVKFLTDKILGLRENQFVADVLDERSVQMTPTDYCFVVKWVGQVSW 60
M K+AL +AKDWRERVKFLTDKIL L+ NQFVAD+LD R VQMTPTDYCFVVK VGQ SW
Sbjct: 112 MNKVALIKAKDWRERVKFLTDKILSLKSNQFVADILDARLVQMTPTDYCFVVKSVGQESW 171
Query: 61 QRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAM 120
QRALEV+EWLNLRHW SPNARM+A IL VLG+ NQE+LAVE F RAE V D VQVYNAM
Sbjct: 172 QRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAM 231
Query: 121 MGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRS 180
MG+Y+R+G+F K QEL+D MR+RGC PDL+SFNTLINARL+SG + PNL V+LL+ VR S
Sbjct: 232 MGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNS 291
Query: 181 GLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKA 240
GLRPD ITYNT++SACSR+SNL+ A+KV+ D+EAH CQPDLWTYNAMISVYGRCGL +A
Sbjct: 292 GLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEA 351
Query: 241 EQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHM 300
E+LF ELE KGFFPDAVTYNSLLYAFARE N EKVKE+ + M KMGFGKDEMTYNTIIHM
Sbjct: 352 ERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHM 411
Query: 301 YGKQGQHDVALQLYRDMK-LSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKP 359
YGKQGQ D+ALQLY+DMK LSGRNPD +TYTVLIDSLGKAN+ EAA +MSEMLD +KP
Sbjct: 412 YGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKP 471
Query: 360 TLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLY 419
TL+TYSALICGYAKAG R EAE TF CM RSG +PD+LAYSVMLD+ LR NET KA LY
Sbjct: 472 TLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLY 531
Query: 420 QEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYD 479
++M+S+G TP LYE+MI L +EN+ ++I+K +RDM+EL G+N EISS+LVKGEC+D
Sbjct: 532 RDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSVLVKGECFD 591
Query: 480 HAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFI 539
AA L+ AI NG EL+++ LLSIL SY+ SGRH EA EL+EF+K+HAS S +T+A I
Sbjct: 592 LAARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHASGSKRLITEALI 651
Query: 540 IMLCKAQKLDAALEEY-----SNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDM 594
++ CK L AAL+EY + W FG S TMYE+L+H C NE +AEASQVFSD+
Sbjct: 652 VLHCKVNNLSAALDEYFADPCVHGWCFG----SSTMYETLLHCCVANEHYAEASQVFSDL 707
Query: 595 RFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKL 654
R E SE + +SMVV YCK+ FPETAH + +QAE KG F +Y DII+AYG+ KL
Sbjct: 708 RLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKL 767
Query: 655 WQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSING 714
WQKAES+VG LRQ D K WN+L+ AYA GCYERARA+FNTMMRDGPSPTV+SIN
Sbjct: 768 WQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINI 827
Query: 715 LLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAG 774
LL AL VDGRL ELYVV++ELQDM FKISKSSILLMLDAFAR+GNIFEVKKIY MKAAG
Sbjct: 828 LLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAG 887
Query: 775 YFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTI 834
Y PT+ LYR+M L CKGKRVRD E MVSEM+EA FK +L+IWNSMLK+YT IED+KKT+
Sbjct: 888 YLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTV 947
Query: 835 QVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAF 894
QVYQ I+E L+PDE ++NTLIIMYCRD RPEEG LM +MR LGL+PKLDTYKSLISAF
Sbjct: 948 QVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAF 1007
Query: 895 GKQQQLEQAEELLK 908
GKQ+ LEQAE+L +
Sbjct: 1008 GKQKCLEQAEQLFE 1021
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata] gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1318 bits (3411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 637/914 (69%), Positives = 748/914 (81%), Gaps = 10/914 (1%)
Query: 1 MTKLALKRAKDWRERVKFLTDKILGLRENQFVADVLDERSVQMTPTDYCFVVKWVGQVSW 60
M K+AL +AKDWRERVKFLTDKIL L+ NQFVAD+LD R VQMTPTDYCFVVK VGQ SW
Sbjct: 112 MNKVALIKAKDWRERVKFLTDKILSLKPNQFVADILDARPVQMTPTDYCFVVKSVGQESW 171
Query: 61 QRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAM 120
QRALEV+EWLNLRHW SPNARM+A IL VLG+ NQE+LAVE F RAE V D VQVYNAM
Sbjct: 172 QRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAM 231
Query: 121 MGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRS 180
MG+Y+R+G+F K QELLD MR+RGC PDL+SFNTLINARL+SG + PNL V+LL+ VR S
Sbjct: 232 MGVYSRSGKFSKAQELLDAMRQRGCVPDLISFNTLINARLKSGGLTPNLVVELLDMVRNS 291
Query: 181 GLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKA 240
GLRPD ITYNT++SACSR+SNLE A+KV+ D+EAH CQPDLWTYNAMISVYGRCGL +A
Sbjct: 292 GLRPDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEA 351
Query: 241 EQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHM 300
E+LF ELE KGF PDAVTYNSLLYAFARE N EKVKE+ + M KMGFGKDEMTYNTIIHM
Sbjct: 352 ERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHM 411
Query: 301 YGKQGQHDVALQLYRDMK-LSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKP 359
YGKQGQ D+ALQLY+DMK LSGRNPD +TYTVLIDSLGKAN+ EAA +MSEMLD +KP
Sbjct: 412 YGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKP 471
Query: 360 TLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLY 419
TL+TYSALICGYAKAG R EAE TF CM RSG +PD+LAYSVMLD+ LR NET KA +LY
Sbjct: 472 TLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWVLY 531
Query: 420 QEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYD 479
++M+S+G TP +LYE+MI L +EN+ ++++K +RDM+EL G+N EISS+LVKGEC+D
Sbjct: 532 RDMISDGHTPSHSLYELMILGLMKENRSDDVQKTIRDMEELCGMNPLEISSVLVKGECFD 591
Query: 480 HAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFI 539
AA L+ AI NG EL+++ LLSIL SY+ SGRH EA EL+EF+K+HAS S + +A I
Sbjct: 592 LAARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHASGSKRLINEALI 651
Query: 540 IMLCKAQKLDAALEEY-----SNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDM 594
++ CK + AAL+EY + W FG TMYE+L+H C NE +AEASQVFS++
Sbjct: 652 VLHCKVNNIGAALDEYLADPCVHGWCFG----GSTMYETLLHCCVANEHYAEASQVFSEL 707
Query: 595 RFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKL 654
R EPSE + +SMVV YCK+ FPETA+ + +QAE KG F +Y DII+AYG+LKL
Sbjct: 708 RLSGCEPSESVCKSMVVVYCKLGFPETAYQVVNQAETKGFHFACSPMYTDIIEAYGKLKL 767
Query: 655 WQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSING 714
WQKAES+VG LRQ D K WN+L+ AYA GCYERARA+FNTMMRDGPSPTV+SIN
Sbjct: 768 WQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTMMRDGPSPTVESINK 827
Query: 715 LLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAG 774
LL AL VDGRL ELYVV++ELQDM FKISKSSILLMLDAFAR+GNIFEV KIY MKAAG
Sbjct: 828 LLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVNKIYSSMKAAG 887
Query: 775 YFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTI 834
Y PT+ LYR+M L CKGKRVRD E MVSEM+EA FK +L+IWNSMLK+YT IED+KKT+
Sbjct: 888 YLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTV 947
Query: 835 QVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAF 894
QVYQ I+E+ L+PDE ++NTLIIMYCRD RPEEG SLM +MR LGL+PKLDTYKSLISAF
Sbjct: 948 QVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEGYSLMQQMRNLGLDPKLDTYKSLISAF 1007
Query: 895 GKQQQLEQAEELLK 908
GKQ+ LEQAE+L +
Sbjct: 1008 GKQKCLEQAEQLFE 1021
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1284 bits (3323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/909 (68%), Positives = 751/909 (82%), Gaps = 2/909 (0%)
Query: 1 MTKLALKRAKDWRERVKFLTDKILGLRENQFVADVLDERSVQMTPTDYCFVVKWVGQVSW 60
M KLALK+ +WRERVKFLTD+IL L+ ++FV VL+E V TPTD+CFVVK VGQ SW
Sbjct: 151 MNKLALKKEMNWRERVKFLTDRILSLKCDEFVGHVLEEHRVLFTPTDFCFVVKSVGQSSW 210
Query: 61 QRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAM 120
QRALE+YE L ++ W++ NARM+ATIL+VLGKANQE +AVE F +AES + DTVQVYNAM
Sbjct: 211 QRALELYECLTMQQWYATNARMVATILSVLGKANQEGIAVEIFAKAESVIADTVQVYNAM 270
Query: 121 MGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRS 180
MG+YARNG F+KV E+ +LMR+RGCEPD+VSFNTLINA+++S A V L ++LL+EV +
Sbjct: 271 MGVYARNGNFEKVNEMFNLMRERGCEPDIVSFNTLINAKVKSCATVSGLAIELLDEVGKF 330
Query: 181 GLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKA 240
GLRPDIITYNT+ISACSRESNL+EA+ V+ +E++ CQPDLWTYNAMISVYGRCG KA
Sbjct: 331 GLRPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKA 390
Query: 241 EQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHM 300
E LF++L+S GF PDAVTYNSLLYAF++EGN EKV++ISE M+KMGFGKDEMTYNTIIHM
Sbjct: 391 EHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHM 450
Query: 301 YGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPT 360
YGK G+HD AL+LYRDMK SGRNPD VTYTVLID LGKA+KI EA+ VMSEMLDA VKPT
Sbjct: 451 YGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPT 510
Query: 361 LRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQ 420
L TYSALIC YAK G R+EAE+TF MR SGI+ DHLAYSVMLD FLRFNE KA LYQ
Sbjct: 511 LHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQ 570
Query: 421 EMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDH 480
EM+ GFTPD LYE+M+ L REN G+ I +VV+D KEL +N +ISS+LVKG CYDH
Sbjct: 571 EMIEAGFTPDTGLYEVMLPALVRENMGDVIERVVQDTKELGSMNPHDISSVLVKGGCYDH 630
Query: 481 AAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFII 540
A++L+ AI NG ELD E LSI+SSY+ S R+ EACEL+EF ++HA + +T+A II
Sbjct: 631 GAKMLKVAISNGYELDREIFLSIMSSYSSSARYSEACELVEFFREHAPDDIQMITEALII 690
Query: 541 MLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIE 600
+LCKA KLDAALEEY + G G F +S TMYESLIH C +E+F ASQ+FSDMRF +E
Sbjct: 691 ILCKAGKLDAALEEYRSRGGLGTF-RSCTMYESLIHECTKSEQFDIASQLFSDMRFNGVE 749
Query: 601 PSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIY-VDIIDAYGRLKLWQKAE 659
PSE LY+SMV YC++ FPETA + AEK I ++++++ +DII+ YG+LK+WQ AE
Sbjct: 750 PSECLYQSMVSVYCRIGFPETAQHLLYHAEKNDIILDNVTVHIIDIIETYGKLKMWQSAE 809
Query: 660 SLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQAL 719
S+V LRQRC+ +DRKVWNALI AYA SGCYERARA+FNTMMR+GPSPTV+S+NGLLQAL
Sbjct: 810 SIVENLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMREGPSPTVESVNGLLQAL 869
Query: 720 IVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTM 779
IVDGRL+ELYVVIQELQDMD KISKSSILLML+AFA++GN+FEV+K+Y+GMKAAGYFPTM
Sbjct: 870 IVDGRLSELYVVIQELQDMDLKISKSSILLMLEAFAQAGNLFEVQKVYNGMKAAGYFPTM 929
Query: 780 YLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQE 839
+LYR+M GL C+ KRVRDV M+SEM EAGFKPDL I+NS+LKLY+ IE+F+ +YQ
Sbjct: 930 HLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQM 989
Query: 840 IQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQ 899
IQ+A L PDE+++NTLI MYCRD RPEEGLSLMH+M+ LGLEPK DTY+S+I+AF KQQ
Sbjct: 990 IQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQL 1049
Query: 900 LEQAEELLK 908
+QAEEL +
Sbjct: 1050 YDQAEELFE 1058
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 909 | ||||||
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.933 | 0.763 | 0.246 | 3.5e-57 | |
| TAIR|locus:2027166 | 862 | PTAC2 "plastid transcriptional | 0.574 | 0.605 | 0.269 | 1.8e-56 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.727 | 0.807 | 0.236 | 8.5e-56 | |
| TAIR|locus:2044430 | 822 | AT2G18940 [Arabidopsis thalian | 0.713 | 0.789 | 0.239 | 2.6e-55 | |
| TAIR|locus:2054331 | 822 | EMB2654 "EMBRYO DEFECTIVE 2654 | 0.772 | 0.854 | 0.218 | 3e-47 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.787 | 0.822 | 0.229 | 9.3e-47 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.453 | 0.688 | 0.286 | 1.4e-46 | |
| TAIR|locus:2061310 | 918 | GUN1 "AT2G31400" [Arabidopsis | 0.436 | 0.432 | 0.273 | 5.6e-45 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.800 | 0.802 | 0.225 | 4.1e-42 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.521 | 0.634 | 0.255 | 5.9e-42 |
| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 3.5e-57, P = 3.5e-57
Identities = 220/894 (24%), Positives = 399/894 (44%)
Query: 24 LGLREN-QFVADVLDE-RSVQMTPTDYCFVV--KWVGQVSWQRALEVYEWLNLR--HWFS 77
LG R + V +L E ++ + P Y F + + +G+ + E YE L
Sbjct: 233 LGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAG--KINEAYEILKRMDDEGCG 290
Query: 78 PNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQV-YNAMMGIYARNGRFQKVQEL 136
P+ ++ L A + + A E F + ++ +V Y ++ ++ N V++
Sbjct: 291 PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQF 350
Query: 137 LDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLG--VDLLNEVRRSGLRPDIITYNTIIS 194
M K G PD+V+F L++A ++G N G D L+ +R G+ P++ TYNT+I
Sbjct: 351 WSEMEKDGHVPDVVTFTILVDALCKAG----NFGEAFDTLDVMRDQGILPNLHTYNTLIC 406
Query: 195 ACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFP 254
R L++A++++G++E+ +P +TY I YG+ G A + F+++++KG P
Sbjct: 407 GLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAP 466
Query: 255 DAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLY 314
+ V N+ LY+ A+ G + K+I + +G D +TYN ++ Y K G+ D A++L
Sbjct: 467 NIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLL 526
Query: 315 RDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKA 374
+M +G PDV+ LI++L KA+++ EA + M + +KPT+ TY+ L+ G K
Sbjct: 527 SEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKN 586
Query: 375 GNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALY 434
G EA + F M + G P+ + ++ + D + +E A+ + +M+ G PD Y
Sbjct: 587 GKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTY 646
Query: 435 EIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSIL---VKGECYDHAAEILRSAIRN 491
+I L + + +E MK+L + + ++L VK + A +I+ + + N
Sbjct: 647 NTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYN 706
Query: 492 GIE----LDHEKLL-SILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQ 546
+ L E L+ SIL+ + + E + V + I CK
Sbjct: 707 CADQPANLFWEDLIGSILAEAGIDNA-VSFSERL--VANGICRDGDSILVPIIRYSCKHN 763
Query: 547 KLDAA---LEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSE 603
+ A E+++ G K T Y LI + A VF ++ P
Sbjct: 764 NVSGARTLFEKFTK--DLGVQPKLPT-YNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDV 820
Query: 604 DLYRSMVVAYCKMD-FPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESL- 661
Y ++ AY K E + + + E +I +I+ + G +K ++L
Sbjct: 821 ATYNFLLDAYGKSGKIDELFELYKEMSTHE---CEANTITHNIVIS-GLVKAGNVDDALD 876
Query: 662 --VGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQAL 719
+ R + LI + SG A+ +F M+ G P N L+
Sbjct: 877 LYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGF 936
Query: 720 IVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTM 779
G + + + + + + +++D G + E + +K +G P +
Sbjct: 937 GKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDV 996
Query: 780 YLYR-VMSGLFCKGKRVRDVEAMVSEMKEA-GFKPDLSIWNSMLKLYTGIEDF-KKTIQV 836
Y +++GL K R+ + + +EMK + G PDL +NS++ L GI ++ ++
Sbjct: 997 VCYNLIINGLG-KSHRLEEALVLFNEMKTSRGITPDLYTYNSLI-LNLGIAGMVEEAGKI 1054
Query: 837 YQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSL 890
Y EIQ A L+P+ +FN LI Y +PE ++ M G P TY+ L
Sbjct: 1055 YNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
|
|
| TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 601 (216.6 bits), Expect = 1.8e-56, P = 1.8e-56
Identities = 144/534 (26%), Positives = 271/534 (50%)
Query: 16 VKFLTDKILGLRENQFVADVLDERSVQMTPTDYCFVVK-WVGQVSWQRALEVYEWLNLRH 74
V+ L +K+ L +A LD +++ D+ V K + G+ WQR+L +++++ +
Sbjct: 76 VESLINKLSSLPPRGSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQI 135
Query: 75 WFSPNARMLATILAVLGKANQENLAVETFMRAES-AVDDTVQVYNAMMGIYARNGRFQKV 133
W PN + ++++LG+ + +E F S V +V Y A++ Y RNGR++
Sbjct: 136 WCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETS 195
Query: 134 QELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTII 193
ELLD M+ P ++++NT+INA R G L + L E+R G++PDI+TYNT++
Sbjct: 196 LELLDRMKNEKISPSILTYNTVINACARGGLDWEGL-LGLFAEMRHEGIQPDIVTYNTLL 254
Query: 194 SACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFF 253
SAC+ +EA V+ + PDL TY+ ++ +G+ EK L E+ S G
Sbjct: 255 SACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSL 314
Query: 254 PDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQL 313
PD +YN LL A+A+ G++++ + M G + TY+ +++++G+ G++D QL
Sbjct: 315 PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQL 374
Query: 314 YRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAK 373
+ +MK S +PD TY +LI+ G+ E + +M++ +++P + TY +I K
Sbjct: 375 FLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGK 434
Query: 374 AGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQAL 433
G +A K M + I P AY+ +++ F + +A++ + M G P
Sbjct: 435 GGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIET 494
Query: 434 YEIMIGVLGRENKGEEIRKVVRDMKELSGI--NMQEISSILV---KGECYDHAAEILRSA 488
+ ++ R +E ++ + + SGI N ++ + +G ++ A +
Sbjct: 495 FHSLLYSFARGGLVKESEAILSRLVD-SGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDM 553
Query: 489 IRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIML 542
++ + D L ++LS Y+ + R ++ C +F + AS+ P + + +ML
Sbjct: 554 EKSRCDPDERTLEAVLSVYSFA-RLVDECRE-QFEEMKASDILPSI-MCYCMML 604
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 8.5e-56, P = 8.5e-56
Identities = 166/702 (23%), Positives = 337/702 (48%)
Query: 42 QMTPTDYCFVVKWVG-QVSWQRALEVYEW-LNLRHWFSP-NARMLATILAVLGKANQENL 98
+ T ++ +K +G + AL ++W + + + S + ++A I+++LGK + +
Sbjct: 132 ESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSS 191
Query: 99 AVETFMRA-ESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLIN 157
A F E V Y +++ +A +GR+++ + M + GC+P L+++N ++N
Sbjct: 192 AANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILN 251
Query: 158 ARLRSGAMVP-NLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHN 216
+ G P N L+ +++ G+ PD TYNT+I+ C R S +EA +V+ +++A
Sbjct: 252 VFGKMGT--PWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAG 309
Query: 217 CQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVK 276
D TYNA++ VYG+ ++A ++ E+ GF P VTYNSL+ A+AR+G +++
Sbjct: 310 FSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAM 369
Query: 277 EISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSL 336
E+ M + G D TY T++ + + G+ + A+ ++ +M+ +G P++ T+ I
Sbjct: 370 ELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMY 429
Query: 337 GKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDH 396
G K +E + E+ + P + T++ L+ + + G E F M+R+G P+
Sbjct: 430 GNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 489
Query: 397 LAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRD 456
++ ++ + R +AM +Y+ M+ G TPD + Y ++ L R E+ KV+ +
Sbjct: 490 ETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAE 549
Query: 457 MKELSGINMQEIS--SILVKGECYDHAAEI-----LRSAIRNGIELDHEKLLSILSSYNV 509
M++ E++ S+L Y + EI L + +G+ LL L V
Sbjct: 550 MED-GRCKPNELTYCSLL---HAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVL--V 603
Query: 510 SGRHLEACELIEFVKQHASES-----TPPLT--QAFIIMLCKAQKLDAA--LEEYSNAWG 560
+ C+L+ ++ SE +P +T + + + + Q + A + +Y G
Sbjct: 604 CSK----CDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERG 659
Query: 561 FGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPE 620
F + S Y SL++ + F ++ ++ ++ I+P Y +++ AYC+
Sbjct: 660 F---TPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMR 716
Query: 621 TAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVG-CLRQRCAPVDRKVWNA 679
A I + GI D+ Y I +Y ++++A +V ++ C P ++ +N+
Sbjct: 717 DASRIFSEMRNSGI-VPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRP-NQNTYNS 774
Query: 680 LIKAYAASGCYERARAVFNTMMRDGP-SPTVDSINGLLQALI 720
++ Y + A+ + P +P + + LL+ ++
Sbjct: 775 IVDGYCKLNRKDEAKLFVEDLRNLDPHAPKGEDLR-LLERIV 815
|
|
| TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 588 (212.0 bits), Expect = 2.6e-55, P = 2.6e-55
Identities = 161/671 (23%), Positives = 307/671 (45%)
Query: 37 DERSVQMTPTDYCFVVKWVGQVS-WQRALEVYEWLNLRH---WFSPNARMLATILAVLGK 92
D ++ TD +VK + W+RA+ ++EWL L + +++ + +LG+
Sbjct: 128 DSVKSELLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGR 187
Query: 93 ANQENLAVETFMRA---ESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDL 149
+Q ++A + + E +D V+ Y ++ Y+R G+++K +L + M++ G P L
Sbjct: 188 ESQYSVAAKLLDKIPLQEYLLD--VRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTL 245
Query: 150 VSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVY 209
V++N +++ + G + + +L+E+R GL+ D T +T++SAC+RE L EA + +
Sbjct: 246 VTYNVILDVFGKMGRSWRKI-LGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFF 304
Query: 210 GDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFARE 269
+L++ +P TYNA++ V+G+ G++ +A + KE+E D+VTYN L+ A+ R
Sbjct: 305 AELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRA 364
Query: 270 GNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTY 329
G ++ + E M K G + +TY T+I YGK G+ D AL+L+ MK +G P+ TY
Sbjct: 365 GFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTY 424
Query: 330 TVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRR 389
++ LGK ++ +E ++ +M P T++ ++ G + F M+
Sbjct: 425 NAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKS 484
Query: 390 SGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEE 449
G PD ++ ++ + R A +Y EM GF Y ++ L R+
Sbjct: 485 CGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRS 544
Query: 450 IRKVVRDMKELSGINMQEISSILVKGECYDHAA-----EILRSAIRNGIELDHEKLLSIL 504
V+ DMK G E S L+ +CY E + + I+ G LL L
Sbjct: 545 GENVISDMKS-KGFKPTETSYSLML-QCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTL 602
Query: 505 SSYNVSGRHLEACE-LIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGF 563
N R L E K+H + + + + + + D A + G
Sbjct: 603 LLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGL 662
Query: 564 FSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAH 623
S Y SL+ +A ++ + ++P Y +++ +C+ + A
Sbjct: 663 -SPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAV 721
Query: 624 FIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQR-CAPVDRKVWNALIK 682
+ + ++GI + Y + Y + ++ + E ++ C+ + C P + + ++
Sbjct: 722 RMLSEMTERGIR-PCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRP-NELTFKMVVD 779
Query: 683 AYAASGCYERA 693
Y +G Y A
Sbjct: 780 GYCRAGKYSEA 790
|
|
| TAIR|locus:2054331 EMB2654 "EMBRYO DEFECTIVE 2654" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 3.0e-47, P = 3.0e-47
Identities = 158/722 (21%), Positives = 323/722 (44%)
Query: 72 LRHWFSPNARM-LATILAVLGKANQENLAVETF--MRAESAVDDTVQVYNAMMGIYARNG 128
L W AR ++ L + L V F M+ + +YN M+ ++AR+
Sbjct: 98 LNSWVGRFARKNFPVLIRELSRRGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHN 157
Query: 129 RFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIIT 188
+ + L M+K C+PD +++ LINA R+G ++L++++ R+ + P T
Sbjct: 158 WVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQW--RWAMNLMDDMLRAAIAPSRST 215
Query: 189 YNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELE 248
YN +I+AC N EA++V + + PDL T+N ++S Y + KA F+ ++
Sbjct: 216 YNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMK 275
Query: 249 SKGFFPDAVTYNSLLYAFAREGNVEKVKEISENML--KMGFGKDEMTYNTIIHMYGKQGQ 306
PD T+N ++Y ++ G + ++ +M + D +T+ +I+H+Y +G+
Sbjct: 276 GAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGE 335
Query: 307 HDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSA 366
+ ++ M G P++V+Y L+ + A +V+ ++ + P + +Y+
Sbjct: 336 IENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTC 395
Query: 367 LICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNG 426
L+ Y ++ +A++ F MR+ +P+ + Y+ ++D + +A+ ++++M +G
Sbjct: 396 LLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDG 455
Query: 427 FTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILR 486
P+ ++ R K + V+ + GIN+ + G Y +AAE+ +
Sbjct: 456 IKPNVVSVCTLLAACSRSKKKVNVDTVL-SAAQSRGINLNTAAYNSAIGS-YINAAELEK 513
Query: 487 S-AIRNGIELDHEKLLSILSSYNVSG--RHLEACELIEFVKQHASESTPPLTQAFIIMLC 543
+ A+ + K S+ + +SG R + E I ++K+ S P + + +LC
Sbjct: 514 AIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLC 573
Query: 544 KAQKLDAALEEYS--NAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEP 601
K E S N Y S++H+ +E++ +A ++F +M IEP
Sbjct: 574 AYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEP 633
Query: 602 SEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESL 661
+++ A+ K P + D +K IPF +++ +I A L+ W++A L
Sbjct: 634 DSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTG-AVFFEIFSACNTLQEWKRAIDL 692
Query: 662 VGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIV 721
+ + + + N ++ + SG E +F ++ G + + LL+ L+
Sbjct: 693 IQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLA 752
Query: 722 DGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNI-FE--VKKIYHGM--KAAGYF 776
G + V++ + + S ++ RS I FE +++ + K G
Sbjct: 753 VGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIEFEPLIRQKLESLRNKGEGLI 812
Query: 777 PT 778
PT
Sbjct: 813 PT 814
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 518 (187.4 bits), Expect = 9.3e-47, P = 9.3e-47
Identities = 168/733 (22%), Positives = 321/733 (43%)
Query: 35 VLDERSVQ-MTPTDYCFVVKWVGQVSWQRALEVYEWLNL-RHW-FSPNARMLATILAVLG 91
+L E SV P+ + +G V + E Y+ + + R + F P T++
Sbjct: 120 ILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFS 179
Query: 92 KANQENLAVETFMRA-ESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLV 150
N ++ + F + E + TV ++ ++ +A+ GR LLD M+ + D+V
Sbjct: 180 AVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIV 239
Query: 151 SFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYG 210
+N I++ + G + ++ +E+ +GL+PD +TY ++I + + L+EA++++
Sbjct: 240 LYNVCIDSFGKVGKV--DMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFE 297
Query: 211 DLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREG 270
LE + P + YN MI YG G F++A L + +KG P + YN +L + G
Sbjct: 298 HLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMG 357
Query: 271 NVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYT 330
V++ ++ E M K + TYN +I M + G+ D A +L M+ +G P+V T
Sbjct: 358 KVDEALKVFEEM-KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVN 416
Query: 331 VLIDSLGKANKISEAANVMSEMLDASV-KPTLRTYSALICGYAKAGNRLEAEKTFYCMRR 389
+++D L K+ K+ EA + EM D V P T+ +LI G K G +A K + M
Sbjct: 417 IMVDRLCKSQKLDEACAMFEEM-DYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLD 475
Query: 390 SGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEE 449
S R + + Y+ ++ F +Y++M++ +PD L + + + + E+
Sbjct: 476 SDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEK 535
Query: 450 IRKVVRDMKELSGINMQEISSILVKGECY----DHAAEILRSAIRNGIELDHEKLLSILS 505
R + ++K + SIL+ G + E+ S G LD ++
Sbjct: 536 GRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVID 595
Query: 506 SYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFS 565
+ G+ +A +L+E +K E T + I L K +LD A + A
Sbjct: 596 GFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRI-E 654
Query: 566 KSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMD-FPETAHF 624
+ +Y SLI R EA + ++ + P+ + S++ A K + E
Sbjct: 655 LNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVC 714
Query: 625 IADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAY 684
E K P + Y +I+ +++ + KA ++++ + +I
Sbjct: 715 FQSMKELKCTPNQ--VTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGL 772
Query: 685 AASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISK 744
A +G A A+F+ +G P N +++ L R + + + +E + I
Sbjct: 773 AKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHN 832
Query: 745 SSILLMLDAFARS 757
+ +++LD ++
Sbjct: 833 KTCVVLLDTLHKN 845
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 496 (179.7 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 121/423 (28%), Positives = 218/423 (51%)
Query: 92 KANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVS 151
KA + N A+ R + D V YN ++ +G+ ++ E+LD M +R C PD+++
Sbjct: 184 KAGEINNALSVLDRMSVSPD--VVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVIT 241
Query: 152 FNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGD 211
+ LI A R + + LL+E+R G PD++TYN +++ +E L+EA+K D
Sbjct: 242 YTILIEATCRDSGV--GHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLND 299
Query: 212 LEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGN 271
+ + CQP++ T+N ++ G + AE+L ++ KGF P VT+N L+ R+G
Sbjct: 300 MPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGL 359
Query: 272 VEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTV 331
+ + +I E M + G + ++YN ++H + K+ + D A++ M G PD+VTY
Sbjct: 360 LGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNT 419
Query: 332 LIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSG 391
++ +L K K+ +A +++++ P L TY+ +I G AKAG +A K MR
Sbjct: 420 MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD 479
Query: 392 IRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYE-IMIGVLGRENKGEEI 450
++PD + YS ++ R + ++A+ + E G P+ + IM+G+ I
Sbjct: 480 LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAI 539
Query: 451 RKVVRDMKELSGINMQEIS-SILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNV 509
+V + G E S +IL++G Y+ A + A+ EL ++ L+ S+ V
Sbjct: 540 DFLVFMINR--GCKPNETSYTILIEGLAYEGMA---KEALELLNELCNKGLMKKSSAEQV 594
Query: 510 SGR 512
+G+
Sbjct: 595 AGK 597
|
|
| TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 503 (182.1 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 110/402 (27%), Positives = 211/402 (52%)
Query: 46 TDYC-FVVKWVGQVS-WQRALEVYEWLNLRHWF-SPNARMLATILAVLGKANQENLAVET 102
+D C ++++ +G + +A+ YE+ R + ++ + +++ LG+ + +A
Sbjct: 196 SDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRI 255
Query: 103 FMRA-ESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLR 161
F A +TV ++A++ Y R+G ++ + + M++ G P+LV++N +I+A +
Sbjct: 256 FETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGK 315
Query: 162 SGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDL 221
G + +E++R+G++PD IT+N++++ CSR E A ++ ++ + D+
Sbjct: 316 GGMEFKQVA-KFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDV 374
Query: 222 WTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISEN 281
++YN ++ + G + A ++ ++ K P+ V+Y++++ FA+ G ++ +
Sbjct: 375 FSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGE 434
Query: 282 MLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANK 341
M +G D ++YNT++ +Y K G+ + AL + R+M G DVVTY L+ GK K
Sbjct: 435 MRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGK 494
Query: 342 ISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSV 401
E V +EM V P L TYS LI GY+K G EA + F + +G+R D + YS
Sbjct: 495 YDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSA 554
Query: 402 MLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGR 443
++D + A+ L EM G +P+ Y +I GR
Sbjct: 555 LIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGR 596
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 4.1e-42, P = 4.1e-42
Identities = 171/757 (22%), Positives = 332/757 (43%)
Query: 151 SFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYG 210
SF+ LI +RS ++ + V + + + L P++ T + ++ + + AM+++
Sbjct: 158 SFDLLIQHYVRSRRVLDGVLVFKMM-ITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFN 216
Query: 211 DLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREG 270
D+ + +PD++ Y +I +A+++ +E+ G + V YN L+ ++
Sbjct: 217 DMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQ 276
Query: 271 NVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYT 330
V + I +++ D +TY T+++ K + ++ L++ +M +P +
Sbjct: 277 KVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVS 336
Query: 331 VLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRS 390
L++ L K KI EA N++ ++D V P L Y+ALI K EAE F M +
Sbjct: 337 SLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKI 396
Query: 391 GIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEI 450
G+RP+ + YS+++D+F R + + A+ EMV G Y +I G G+ I
Sbjct: 397 GLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLIN--GHCKFGD-I 453
Query: 451 RKVVRDMKELSGINMQEIS---SILVKGEC----YDHAAEILRSAIRNGIELDHEKLLSI 503
M E+ ++ + L+ G C + A + GI ++
Sbjct: 454 SAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTL 513
Query: 504 LSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIML---CKAQKLDAALEEYSNAWG 560
LS +G +A +L + A + P + +M+ C+ + A E
Sbjct: 514 LSGLFRAGLIRDAVKLFN---EMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTE 570
Query: 561 FGFFSKSKTMYESLIHSCEYNERFAEASQVFSD-MRFYNIEPSEDLYRSMVVAYCKMDFP 619
G + + Y LIH + +EA +VF D + N E +E Y ++ +C+
Sbjct: 571 KGIVPDTYS-YRPLIHGLCLTGQASEA-KVFVDGLHKGNCELNEICYTGLLHGFCREGKL 628
Query: 620 ETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQ---RCAPVDRKV 676
E A + + ++G+ DL Y +ID G LK + + G L++ R D +
Sbjct: 629 EEALSVCQEMVQRGVDL-DLVCYGVLID--GSLK-HKDRKLFFGLLKEMHDRGLKPDDVI 684
Query: 677 WNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQ 736
+ ++I A + +G ++ A +++ M+ +G P + ++ L G +NE V+ ++Q
Sbjct: 685 YTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQ 744
Query: 737 DMDFKISKSSILLMLDAFARSGNIFEVKKI-YHGMKAAGYFPTMYLYRVMSGLFCKGKRV 795
+ ++ + LD + G + K + H G Y ++ FC+ R+
Sbjct: 745 PVSSVPNQVTYGCFLDILTK-GEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRI 803
Query: 796 RDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTL 855
+ +++ M G PD + +M+ D KK I+++ + E ++PD ++NTL
Sbjct: 804 EEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTL 863
Query: 856 IIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLIS 892
I C + L +EM + GL P T ++ S
Sbjct: 864 IHGCCVAGEMGKATELRNEMLRQGLIPNNKTSRTTTS 900
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 472 (171.2 bits), Expect = 5.9e-42, P = 5.9e-42
Identities = 127/497 (25%), Positives = 234/497 (47%)
Query: 77 SPNARMLATILAVLGKANQENLAVETFMRAES-AVDDTVQVYNAMMGIYARNGRFQKVQE 135
SPN ++ A ++A+ F + E+ V YN ++ Y + + +
Sbjct: 202 SPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFK 261
Query: 136 LLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISA 195
LL M +G EP+L+S+N +IN R G M V L E+ R G D +TYNT+I
Sbjct: 262 LLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFV--LTEMNRRGYSLDEVTYNTLIKG 319
Query: 196 CSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPD 255
+E N +A+ ++ ++ H P + TY ++I + G +A + ++ +G P+
Sbjct: 320 YCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPN 379
Query: 256 AVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYR 315
TY +L+ F+++G + + + M GF +TYN +I+ + G+ + A+ +
Sbjct: 380 ERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLE 439
Query: 316 DMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAG 375
DMK G +PDVV+Y+ ++ ++ + EA V EM++ +KP TYS+LI G+ +
Sbjct: 440 DMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQR 499
Query: 376 NRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYE 435
EA + M R G+ PD Y+ +++ + + KA+ L+ EMV G PD Y
Sbjct: 500 RTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYS 559
Query: 436 IMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIEL 495
++I L ++++ E ++++ + E S V + H + I N +
Sbjct: 560 VLINGLNKQSRTREAKRLLLKL-------FYEES---VPSDVTYH------TLIENCSNI 603
Query: 496 DHEKLLSILSSYNVSGRHLEACELIEFV--KQHASESTPPLTQAFIIMLCKAQKLDAALE 553
+ + ++S++ + + G EA ++ E + K H + T I C+A + A
Sbjct: 604 EFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTA--YNIMIHGHCRAGDIRKAYT 661
Query: 554 EYSNAWGFGFFSKSKTM 570
Y GF + T+
Sbjct: 662 LYKEMVKSGFLLHTVTV 678
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5G1S8 | PP241_ARATH | No assigned EC number | 0.7002 | 0.9944 | 0.6277 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00014081001 | SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (1342 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 909 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-35 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-31 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-21 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-21 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.001 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.004 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (369), Expect = 1e-35
Identities = 84/342 (24%), Positives = 163/342 (47%), Gaps = 12/342 (3%)
Query: 113 TVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVD 172
T+ +N +M + A + +L L+++ G + D + TLI+ +SG VD
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK------VD 489
Query: 173 LLNEV----RRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMI 228
+ EV +G+ ++ T+ +I C+R + +A YG + + N +PD +NA+I
Sbjct: 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549
Query: 229 SVYGRCGLFEKAEQLFKEL--ESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMG 286
S G+ G ++A + E+ E+ PD +T +L+ A A G V++ KE+ + + +
Sbjct: 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609
Query: 287 FGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAA 346
Y ++ ++G D AL +Y DMK G PD V ++ L+D G A + +A
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669
Query: 347 NVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIF 406
++ + +K +YS+L+ + A N +A + + ++ +RP + ++
Sbjct: 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729
Query: 407 LRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGE 448
N+ KA+ + EM G P+ Y I++ R++ +
Sbjct: 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 7e-31
Identities = 95/393 (24%), Positives = 181/393 (46%), Gaps = 31/393 (7%)
Query: 76 FSPNARMLATILAVLGKANQENLAVETFMRAESA-VDDTVQVYNAMMGIYARNGRFQKVQ 134
+ ++ T+++ K+ + + E F +A V+ V + A++ AR G+ K
Sbjct: 468 LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527
Query: 135 ELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSG--LRPDIITYNTI 192
+MR + +PD V FN LI+A +SGA+ + D+L E++ + PD IT +
Sbjct: 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAV--DRAFDVLAEMKAETHPIDPDHITVGAL 585
Query: 193 ISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGF 252
+ AC+ ++ A +VY + +N + Y ++ + G ++ A ++ +++ KG
Sbjct: 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645
Query: 253 FPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQ 312
PD V +++L+ G+++K EI ++ K G ++Y++++ AL+
Sbjct: 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705
Query: 313 LYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYA 372
LY D+K P V T LI +L + N++ +A V+SEM + P TYS L+
Sbjct: 706 LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765
Query: 373 KAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLR--------------FNE------- 411
+ + + GI+P+ + + + LR F+
Sbjct: 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIEN 825
Query: 412 --TNKAMMLYQEMVSNGFTPDQALYEIMIGVLG 442
T+ A+M+Y+E +S G P E++ VLG
Sbjct: 826 KWTSWALMVYRETISAGTLPTM---EVLSQVLG 855
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 99.6 bits (248), Expect = 3e-21
Identities = 96/455 (21%), Positives = 185/455 (40%), Gaps = 48/455 (10%)
Query: 171 VDLLNEVRRSG-LRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQ----PDLWTYN 225
+DLL ++ + G L D I + AC ++ ++EA + + P L T+N
Sbjct: 390 IDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF--------AKLIRNPTLSTFN 441
Query: 226 AMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKM 285
++SV + A ++ + ++ G D Y +L+ A+ G V+ + E+ M+
Sbjct: 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA 501
Query: 286 GFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEA 345
G + T+ +I + GQ A Y M+ PD V + LI + G++ + A
Sbjct: 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561
Query: 346 ANVMSEMLDAS--VKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVML 403
+V++EM + + P T AL+ A AG A++ + + I+ Y++ +
Sbjct: 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621
Query: 404 DIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGI 463
+ + + + A+ +Y +M G PD+ + ++ V G ++ ++++D ++ GI
Sbjct: 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGI 680
Query: 464 NMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFV 523
+ +S + G C + + +K A EL E +
Sbjct: 681 KLGTVSYSSLMGACSNAK--------------NWKK----------------ALELYEDI 710
Query: 524 KQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNER 583
K T A I LC+ +L ALE S G + T Y L+ + E +
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT-YSILLVASERKDD 769
Query: 584 FAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDF 618
+ S + I+P+ + R + C F
Sbjct: 770 ADVGLDLLSQAKEDGIKPNLVMCRC-ITGLCLRRF 803
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 9e-21
Identities = 93/356 (26%), Positives = 165/356 (46%), Gaps = 19/356 (5%)
Query: 117 YNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVP-NLGVDLLN 175
+NAM+ Y NG + EL MR+ +PDL++ ++I+A + LG ++
Sbjct: 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA---CELLGDERLGREMHG 312
Query: 176 EVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCG 235
V ++G D+ N++I + EA KV+ +E D ++ AMIS Y + G
Sbjct: 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNG 368
Query: 236 LFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYN 295
L +KA + + +E PD +T S+L A A G+++ ++ E + G + N
Sbjct: 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428
Query: 296 TIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDA 355
+I MY K D AL+++ ++ DV+++T +I L N+ EA +ML
Sbjct: 429 ALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQML-L 483
Query: 356 SVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKA 415
++KP T A + A+ G + ++ + R+GI D + +LD+++R N A
Sbjct: 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543
Query: 416 MMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSI 471
+ N D + I++ KG ++ M E SG+N E++ I
Sbjct: 544 WNQF-----NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVE-SGVNPDEVTFI 593
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 1e-20
Identities = 108/504 (21%), Positives = 189/504 (37%), Gaps = 89/504 (17%)
Query: 78 PNARMLATILAVLGKANQENLAVETF--MRAESAVDDTVQVYNAMMGIYARNGRFQKVQE 135
+ + I L + A+E F + A Y+A++ + V+
Sbjct: 86 SGVSLCSQIEK-LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKA 144
Query: 136 LLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRR--SGLRPD--IITYNT 191
+ + G EPD N ++ ++ G ++ + RR + P+ + ++ T
Sbjct: 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLI---------DARRLFDEM-PERNLASWGT 194
Query: 192 IISACSRESNLEEAMKVY----GDLEA-------------------------HNCQPDLW 222
II N EA ++ D H C
Sbjct: 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254
Query: 223 TYN------AMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVK 276
A+I +Y +CG E A +F + K V +NS+L +A G E+
Sbjct: 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEAL 310
Query: 277 EISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSL 336
+ M G D+ T++ +I ++ + + A Q + + +G D+V T L+D
Sbjct: 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370
Query: 337 GKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDH 396
K ++ +A NV M + L +++ALI GY G +A + F M G+ P+H
Sbjct: 371 SKWGRMEDARNVFDRM----PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426
Query: 397 LAYSVMLDIFLRFNETNKAMMLYQEMVSN-GFTPDQALYEIMIGVLGRENKGEEIRKVVR 455
+ + +L + + ++Q M N P Y MI +LGRE +E ++R
Sbjct: 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486
Query: 456 DMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDH---EKLLS---------- 502
+NM AA + I +EL EKL
Sbjct: 487 RAPFKPTVNMW--------------AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532
Query: 503 -ILSSYNVSGRHLEACELIEFVKQ 525
+L+ YN SGR EA +++E +K+
Sbjct: 533 VLLNLYNSSGRQAEAAKVVETLKR 556
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 1e-18
Identities = 76/352 (21%), Positives = 151/352 (42%), Gaps = 70/352 (19%)
Query: 114 VQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDL 173
V V N+++ +Y G + + +++ M + D VS+ +I+ ++G +P+ ++
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNG--LPDKALET 376
Query: 174 LNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGR 233
+ + + PD IT +++SAC+ +L+ +K++ E + NA+I +Y +
Sbjct: 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436
Query: 234 CGLFEKAEQLFKELESKG----------------------FF--------PDAVTYNSLL 263
C +KA ++F + K FF P++VT + L
Sbjct: 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAAL 496
Query: 264 YAFAREGNVEKVKEISENMLKMGFG------------------------------KDEMT 293
A AR G + KEI ++L+ G G KD ++
Sbjct: 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVS 556
Query: 294 YNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEM- 352
+N ++ Y G+ +A++L+ M SG NPD VT+ L+ + ++ +++ M
Sbjct: 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616
Query: 353 LDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLD 404
S+ P L+ Y+ ++ +AG EA + + I PD + +L+
Sbjct: 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNF---INKMPITPDPAVWGALLN 665
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 1e-18
Identities = 91/453 (20%), Positives = 186/453 (41%), Gaps = 24/453 (5%)
Query: 188 TYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKEL 247
TY+ ++ AC ++ VY +E+ +PD + N ++ ++ +CG+ A +LF E+
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 248 ESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQH 307
+ + ++ +++ GN + + M + G + T+ ++ G
Sbjct: 185 PER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 308 DVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSAL 367
QL+ + +G D LID K I +A V M + + ++++
Sbjct: 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV----AWNSM 296
Query: 368 ICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGF 427
+ GYA G EA +Y MR SG+ D +S+M+ IF R A + ++ GF
Sbjct: 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356
Query: 428 TPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECY----DHAAE 483
D ++ + + + E+ R V M + I+ + L+ G A E
Sbjct: 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISW----NALIAGYGNHGRGTKAVE 412
Query: 484 ILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFII-ML 542
+ I G+ +H L++LS+ SG + E+ + + ++ + A +I +L
Sbjct: 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472
Query: 543 CKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPS 602
+ LD A A F + M+ +L+ +C ++ + + Y + P
Sbjct: 473 GREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGR--LAAEKLYGMGPE 526
Query: 603 E-DLYRSMVVAYCKMDFPETAHFIADQAEKKGI 634
+ + Y ++ Y A + + ++KG+
Sbjct: 527 KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 3e-17
Identities = 129/640 (20%), Positives = 239/640 (37%), Gaps = 108/640 (16%)
Query: 190 NTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELES 249
N ++S R L A V+G + + DL+++N ++ Y + G F++A L+ +
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 250 KGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDV 309
G PD T+ +L ++ + +E+ ++++ GF D N +I MY K G
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG---- 236
Query: 310 ALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALIC 369
DVV+ ++ D + + + IS ++A+I
Sbjct: 237 ---------------DVVSARLVFDRMPRRDCIS--------------------WNAMIS 261
Query: 370 GYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTP 429
GY + G LE + F+ MR + PD + + ++ + ++ +V GF
Sbjct: 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321
Query: 430 DQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAI 489
D ++ +I + E KV M+ ++ + S K D A E
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME 381
Query: 490 RNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLD 549
++ + D + S+LS+ G +L E ++ S + A I M K + +D
Sbjct: 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441
Query: 550 AALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSM 609
ALE + N K + S+I N R EA F M ++P+ +
Sbjct: 442 KALEVFHN-----IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAA 495
Query: 610 VVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRC 669
+ A ++ I + GI F+ + ++D Y V C R
Sbjct: 496 LSACARIGALMCGKEIHAHVLRTGIGFDGF-LPNALLDLY------------VRCGRMNY 542
Query: 670 A-------PVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVD 722
A D WN L+ Y A G A +FN M+ G +P D +
Sbjct: 543 AWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP--DEV---------- 590
Query: 723 GRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAA-GYFPTMYL 781
+ + +L A +RSG + + + +H M+ P +
Sbjct: 591 -----------------------TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627
Query: 782 YRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSML 821
Y + L + ++ + +++M PD ++W ++L
Sbjct: 628 YACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALL 664
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 2e-16
Identities = 80/384 (20%), Positives = 157/384 (40%), Gaps = 50/384 (13%)
Query: 533 PLTQAFIIML---CKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQ 589
P F +++ +Q +D AL G + K +Y +LI +C + + +
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK-LYTTLISTCAKSGKVDAMFE 493
Query: 590 VFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAY 649
VF +M +E + + ++ ID
Sbjct: 494 VFHEMVNAGVEANVHTFGAL------------------------------------IDGC 517
Query: 650 GRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTV 709
R KA G +R + DR V+NALI A SG +RA V M +
Sbjct: 518 ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP 577
Query: 710 D--SINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIY 767
D ++ L++A G+++ V Q + + + K + + +++ ++ G+ IY
Sbjct: 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637
Query: 768 HGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEA---MVSEMKEAGFKPDLSIWNSMLKL 823
MK G P ++ S L D++ ++ + ++ G K ++S++
Sbjct: 638 DDMKKKGVKPDEVFF----SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693
Query: 824 YTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK 883
+ +++KK +++Y++I+ L+P + N LI C + + L ++ EM++LGL P
Sbjct: 694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753
Query: 884 LDTYKSLISAFGKQQQLEQAEELL 907
TY L+ A ++ + +LL
Sbjct: 754 TITYSILLVASERKDDADVGLDLL 777
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.5 bits (174), Expect = 2e-15
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 289 KDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGK 338
D +TYNT+I Y K+G+ + AL+L+ +MK G P+V TY++LID L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 2e-14
Identities = 74/324 (22%), Positives = 144/324 (44%), Gaps = 26/324 (8%)
Query: 109 AVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPN 168
V DT V A++ +Y++ G + + + D M E V++N+++ G
Sbjct: 255 VVGDTF-VSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEA 309
Query: 169 LGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMI 228
L L E+R SG+ D T++ +I SR + LE A + + L D+ A++
Sbjct: 310 L--CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367
Query: 229 SVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFG 288
+Y + G E A +F + K + +++N+L+ + G K E+ E M+ G
Sbjct: 368 DLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423
Query: 289 KDEMTYNTIIHMYGKQGQHDVALQLYRDM-KLSGRNPDVVTYTVLIDSLGKANKISEAAN 347
+ +T+ ++ G + ++++ M + P + Y +I+ LG+ + EA
Sbjct: 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA-- 481
Query: 348 VMSEMLDASVKPTLRTYSALICGYAKAGN----RLEAEKTFYCMRRSGIRPDHLA-YSVM 402
+ + A KPT+ ++AL+ N RL AEK + G+ P+ L Y V+
Sbjct: 482 -YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLY------GMGPEKLNNYVVL 534
Query: 403 LDIFLRFNETNKAMMLYQEMVSNG 426
L+++ +A + + + G
Sbjct: 535 LNLYNSSGRQAEAAKVVETLKRKG 558
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 2e-13
Identities = 15/50 (30%), Positives = 34/50 (68%)
Query: 184 PDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGR 233
PD++TYNT+I ++ +EEA+K++ +++ +P+++TY+ +I +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 5e-13
Identities = 137/634 (21%), Positives = 256/634 (40%), Gaps = 59/634 (9%)
Query: 295 NTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLD 354
N+ + GQ + AL+L M+ D Y L + E + V S L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 355 ASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNK 414
+ +R +A++ + + G + A F M D +++V++ + + ++
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDE 170
Query: 415 AMMLYQEMVSNGFTPDQALYEIMI---GVLGRENKGEEIR-KVVRDMKELSGINMQEISS 470
A+ LY M+ G PD + ++ G + +G E+ VVR EL + + +
Sbjct: 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230
Query: 471 ILVKGECYD-HAAEIL--RSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHA 527
+ VK C D +A ++ R R+ I + +++S Y +G LE EL F
Sbjct: 231 MYVK--CGDVVSARLVFDRMPRRDCISWN-----AMISGYFENGECLEGLEL--FFTMRE 281
Query: 528 SESTPPL-TQAFIIMLCKA---QKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNER 583
P L T +I C+ ++L + Y GF + ++ SLI
Sbjct: 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF---AVDVSVCNSLIQMYLSLGS 338
Query: 584 FAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYV 643
+ EA +VFS M + + +M+ Y K P+ A E+ + ++++I
Sbjct: 339 WGEAEKVFSRMETKDAVS----WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI-A 393
Query: 644 DIIDA---YGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTM 700
++ A G L + K L V V NALI+ Y+ C ++A VF+ +
Sbjct: 394 SVLSACACLGDLDVGVKLHELAERKGLISYVV---VANALIEMYSKCKCIDKALEVFHNI 450
Query: 701 MRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNI 760
P V S ++ L ++ R E + +++ + K + +++ L A AR G +
Sbjct: 451 ----PEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGAL 505
Query: 761 FEVKKIYH-----GMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLS 815
K+I+ G+ G+ P L L+ + R+ + ++ D+
Sbjct: 506 MCGKEIHAHVLRTGIGFDGFLPNALL-----DLYVRCGRMNYAWNQFNSHEK-----DVV 555
Query: 816 IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEM 875
WN +L Y ++++ + E+ + PDE +F +L+ R +GL H M
Sbjct: 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615
Query: 876 R-KLGLEPKLDTYKSLISAFGKQQQLEQAEELLK 908
K + P L Y ++ G+ +L +A +
Sbjct: 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 8e-13
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 219 PDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAR 268
PD+ TYN +I Y + G E+A +LF E++ +G P+ TY+ L+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 1e-12
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 324 PDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAK 373
PDVVTY LID K K+ EA + +EM +KP + TYS LI G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 7e-12
Identities = 65/261 (24%), Positives = 116/261 (44%), Gaps = 14/261 (5%)
Query: 117 YNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNL--GVDLL 174
+N ++G YA+ G F + L M G PD+ +F + LR+ +P+L G ++
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCV----LRTCGGIPDLARGREVH 210
Query: 175 NEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRC 234
V R G D+ N +I+ + ++ A V+ + +C ++NAMIS Y
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFEN 266
Query: 235 GLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTY 294
G + +LF + PD +T S++ A G+ +E+ ++K GF D
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326
Query: 295 NTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLD 354
N++I MY G A +++ M+ D V++T +I K +A + M
Sbjct: 327 NSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQ 382
Query: 355 ASVKPTLRTYSALICGYAKAG 375
+V P T ++++ A G
Sbjct: 383 DNVSPDEITIASVLSACACLG 403
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 2e-11
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 114 VQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINA 158
V YN ++ Y + G+ ++ +L + M+KRG +P++ +++ LI+
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 3e-09
Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 147 PDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSR 198
PD+V++NTLI+ + G + + L NE+++ G++P++ TY+ +I +
Sbjct: 1 PDVVTYNTLIDGYCKKGKV--EEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 2e-08
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 847 PDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGK 896
PD ++NTLI YC+ + EE L L +EM+K G++P + TY LI K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 1e-07
Identities = 51/238 (21%), Positives = 103/238 (43%), Gaps = 11/238 (4%)
Query: 673 DRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVI 732
D V ALI Y+ G E AR VF+ M P T + N +L + G E +
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCLY 313
Query: 733 QELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKG 792
E++D I + + +M+ F+R + K+ + G+ G+ + + L+ K
Sbjct: 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373
Query: 793 KRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSF 852
R+ D + M + +L WN+++ Y K +++++ + + P+ +F
Sbjct: 374 GRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429
Query: 853 NTLIIMYCR-DCRPEEGLSLMHEM-RKLGLEPKLDTYKSLISAFGKQQQLEQAEELLK 908
++ CR E+G + M ++P+ Y +I G++ L++A +++
Sbjct: 430 -LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 4e-07
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 223 TYNAMISVYGRCGLFEKAEQLFKELESKGFFPDA 256
TYN +I + G E+A +LFKE++ +G PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 9e-07
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 359 PTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLD 404
P + TY+ LI GY K G EA K F M++ GI+P+ YS+++D
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 2e-06
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 394 PDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGR 443
PD + Y+ ++D + + + +A+ L+ EM G P+ Y I+I L +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-06
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 223 TYNAMISVYGRCGLFEKAEQLFKELESKGF 252
TYN++IS Y + G E+A +LFKE++ KG
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 8e-06
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 324 PDVVTYTVLIDSLGKANKISEAANVMSEM 352
PDVVTY LID L +A ++ EA ++ EM
Sbjct: 5 PDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 292 MTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDV 326
+TYNT+I K G+ + AL+L+++MK G PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-05
Identities = 9/50 (18%), Positives = 30/50 (60%)
Query: 812 PDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCR 861
PD+ +N+++ Y ++ ++++ E+++ ++P+ +++ LI C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 187 ITYNTIISACSRESNLEEAMKVYGDLEAHNCQPD 220
+TYNT+I + +EEA++++ +++ +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 216 NCQPDLWTYNAMISVYGRCGLFEKAEQLFKELE 248
+PD+ TYN +I R G ++A +L E+E
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 116 VYNAMMGIYARNGRFQKVQELLDLMRKRGCEPD 148
YN ++ + GR ++ EL M++RG EPD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 7e-05
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 851 SFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEP 882
++NTLI C+ R EE L L EM++ G+EP
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 9e-05
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 180 SGLRPDIITYNTIISACSRESNLEEAMKV 208
GL+PD++TYNT+I R ++EA+++
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVEL 29
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 1e-04
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 677 WNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQAL 719
+N LI Y G E A +FN M + G P V + + L+ L
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 1e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 361 LRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRP 394
L TY+AL+ AKAG+ A M+ SG++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 116 VYNAMMGIYARNGRFQKVQELLDLMRKRGC 145
YN+++ Y + G+ ++ EL M+++G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 3e-04
Identities = 44/221 (19%), Positives = 99/221 (44%), Gaps = 2/221 (0%)
Query: 571 YESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAE 630
+L+ +C + A +V+ + YNI+ + ++Y V + + + A I D +
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641
Query: 631 KKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCY 690
KKG+ D + ++D G KA ++ R++ + +++L+ A + + +
Sbjct: 642 KKGVK-PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700
Query: 691 ERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLM 750
++A ++ + PTV ++N L+ AL +L + V+ E++ + + + ++
Sbjct: 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760
Query: 751 LDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCK 791
L A R + + K G P + + R ++GL C
Sbjct: 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL-CL 800
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 4e-04
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 250 KGFFPDAVTYNSLLYAFAREGNVEKVKEISENM 282
KG PD VTYN+L+ R G V++ E+ + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 4e-04
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 221 LWTYNAMISVYGRCGLFEKAEQLFKELESKGFFP 254
L TYNA++ + G + A + +E+++ G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 5e-04
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 290 DEMTYNTIIHMYGKQGQHDVALQLYRDMK 318
D +TYNT+I + G+ D A++L +M+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 327 VTYTVLIDSLGKANKISEAANVMSEMLDASVKPT 360
VTY LID L KA ++ EA + EM + ++P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 7e-04
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 293 TYNTIIHMYGKQGQHDVALQLYRDMKLSGRNP 324
TYN ++ K G D+AL + +MK SG P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 9e-04
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 293 TYNTIIHMYGKQGQHDVALQLYRDMKLSG 321
TYN++I Y K G+ + AL+L+++MK G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 851 SFNTLIIMYCRDCRPEEGLSLMHEMRKLGL 880
++N+LI YC+ + EE L L EM++ G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 363 TYSALICGYAKAGNRLEAEKTFYCMRRSGI 392
TY++LI GY KAG EA + F M+ G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.8 bits (96), Expect = 0.001
Identities = 43/251 (17%), Positives = 83/251 (33%), Gaps = 3/251 (1%)
Query: 106 AESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAM 165
+ + + + A + + G + ELL+ + DL L+ L
Sbjct: 15 LAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGR 74
Query: 166 VPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYN 225
+ L + L + EEA+++ A + PDL
Sbjct: 75 LEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEAL 134
Query: 226 AMISVYGRCGLFEKAEQLFKELE--SKGFFPDAVTYNSLLYAFAREGNVEKVKEISENML 283
+ G +E+A +L+++ A +L G E+ E+ E L
Sbjct: 135 LALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194
Query: 284 KMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKIS 343
K+ D + +Y K G+++ AL+ Y L + L L + +
Sbjct: 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKA-LELDPDNAEALYNLALLLLELGRYE 253
Query: 344 EAANVMSEMLD 354
EA + + L+
Sbjct: 254 EALEALEKALE 264
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 80/392 (20%), Positives = 159/392 (40%), Gaps = 31/392 (7%)
Query: 77 SPNA-RMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQE 135
S A R+LA+I LG+ ++ A+ T A D + + Y G F+K E
Sbjct: 328 SHQARRLLASIQLRLGRVDE---AIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAE 384
Query: 136 LLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGV-DLLNEVRRSGLRPDIITYNT-II 193
L + +P+ + T + + P+ + DL + L P++ + +I
Sbjct: 385 YLAKATEL--DPENAAARTQL-GISKLSQGDPSEAIADLETAAQ---LDPELGRADLLLI 438
Query: 194 SACSRESNLEEAMKVYGDLEAHNCQPD-LWTYNAMISVYGRCGLFEKAEQLFKE-LESK- 250
+ R ++A+ LE QPD +N + ++Y G KA + F++ L +
Sbjct: 439 LSYLRSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP 496
Query: 251 GFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVA 310
FFP A +L +EGN + + E +L + K+ + +Y + G + A
Sbjct: 497 DFFPAAA---NLARIDIQEGNPDDAIQRFEKVLTI-DPKNLRAILALAGLYLRTGNEEEA 552
Query: 311 LQLYRDMKLSGRNPDVVT-YTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALIC 369
+ K + NP + L ++ +A +++E DA+ + + L
Sbjct: 553 VAWLE--KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGR 609
Query: 370 GYAKAGNRLEAEKTFYCMRRSGIRPDH-LAYSVMLDIFLRFNETNKAMMLYQEMVSNGFT 428
AG+ +A +F + ++PD LA ++ D + KA+ + +
Sbjct: 610 AQLAAGDLNKAVSSF--KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL--K 665
Query: 429 PDQALYEIMIG-VLGRENKGEEIRKVVRDMKE 459
PD +I + +L + E +K+ + +++
Sbjct: 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 362 RTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPD 395
TY+ LI G KAG EA + F M+ GI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 676 VWNALIKAYAASGCYERARAVFNTMMRDGPSPTV 709
+N LI +G E A +F M G P V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 257 VTYNSLLYAFAREGNVEKVKEISENMLKMGF 287
VTYN+L+ + G VE+ E+ + M + G
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 187 ITYNTIISACSRESNLEEAMKVYGDLEAHNC 217
+TYN++IS + LEEA++++ +++
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 114 VQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEP 147
++ YNA++ A+ G +L+ M+ G +P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.003
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 398 AYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPD 430
Y+ ++D + +A+ L++EM G PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.004
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 750 MLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCK 791
++D + + G + E K+++ MK G P +Y Y ++ CK
Sbjct: 9 LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 676 VWNALIKAYAASGCYERARAVFNTMMRDG 704
+N+LI Y +G E A +F M G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 909 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.98 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.85 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.78 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.77 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.75 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.72 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.72 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.71 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.7 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.69 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.69 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.69 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.68 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.68 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.67 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.67 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.66 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.66 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.6 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.6 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.58 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.56 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.56 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.55 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.53 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.51 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.5 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.48 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.47 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.45 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.44 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.44 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.43 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.4 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.37 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.33 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.31 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.31 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.29 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.28 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.27 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.27 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.27 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.27 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.26 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.25 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.24 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.12 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.08 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.07 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.01 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.99 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.91 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.9 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.9 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.89 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.89 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.87 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.86 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.85 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.8 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.78 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.76 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.75 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.74 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.72 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.68 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.67 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.66 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.64 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.63 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.61 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.6 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.6 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.59 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.59 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.56 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.53 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.52 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.51 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.49 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.48 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.44 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.41 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.32 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.25 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.23 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.23 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.21 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.18 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.17 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.12 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.1 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.09 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.09 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.07 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.06 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.06 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.06 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.06 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.05 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.04 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.0 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.95 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.94 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.94 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.93 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.93 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.91 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.89 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.88 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.87 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.85 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.84 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.83 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.8 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.78 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.77 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.76 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.71 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.7 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.7 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.68 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.66 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.64 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.63 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.61 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.6 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.59 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.59 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.59 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.58 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.58 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.56 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.56 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.55 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.53 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.51 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.51 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.47 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.47 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.41 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.4 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.38 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.32 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.31 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.3 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.23 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.22 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.18 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.16 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.15 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.15 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.14 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.12 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.12 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.09 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.07 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.03 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.01 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.98 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.98 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.96 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.94 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.93 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.92 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.92 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.85 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.82 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.82 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.81 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.74 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.72 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.71 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.65 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.63 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.57 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.55 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.5 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.46 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.44 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.42 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.41 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.33 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.33 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.28 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.16 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.15 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.06 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.05 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.96 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.9 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.87 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.85 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.8 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.74 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.73 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.73 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.65 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.64 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.63 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.61 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.61 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.37 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.35 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.29 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.23 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.2 | |
| PRK09687 | 280 | putative lyase; Provisional | 95.15 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.09 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.97 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.93 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.79 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.7 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.68 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.55 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.43 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.42 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.29 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.17 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.08 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.08 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.7 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.55 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.47 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.46 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.43 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.27 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.13 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.04 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.04 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.01 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.7 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.55 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.46 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.94 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.81 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.74 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 91.66 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.61 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.47 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.47 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.41 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.39 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.25 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.14 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.96 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.93 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.69 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.38 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.3 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.84 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.18 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.87 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 88.51 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.5 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.3 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.19 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.97 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.96 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.69 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 87.44 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.26 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 87.18 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.01 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.93 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 86.42 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.26 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 85.93 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.69 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.65 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 85.31 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 85.2 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 85.01 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 85.0 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.91 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 84.53 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 84.53 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 84.38 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.13 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.09 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.04 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.96 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.86 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 83.82 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 83.81 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.66 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 83.64 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 83.57 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.56 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.49 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 82.81 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 82.57 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.56 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.41 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 81.76 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 81.51 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.08 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 80.79 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 80.74 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 80.51 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 80.1 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 80.01 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-85 Score=764.56 Aligned_cols=678 Identities=20% Similarity=0.286 Sum_probs=644.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 002549 111 DDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYN 190 (909)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 190 (909)
.++..++|.++.+|++.|++++|..+|+.|.+.|++|+..+|..++.+|.+.+.. ..+..++..+.+.+..++..++|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAV--EEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCH--HHHHHHHHHHHHcCCCCCchHHH
Confidence 5678899999999999999999999999999999999999999999999988864 56899999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002549 191 TIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREG 270 (909)
Q Consensus 191 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 270 (909)
+|+.+|++.|+++.|.++|++|. .||+++||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.+
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 99999999999999999999997 58999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002549 271 NVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMS 350 (909)
Q Consensus 271 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (909)
+++.+.+++..+.+.|+.||..+++.++.+|++.|+++.|..+|++|. .||..+|+++|.+|++.|++++|+++|+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997 5899999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 002549 351 EMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPD 430 (909)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 430 (909)
+|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 579
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 002549 431 QALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVS 510 (909)
Q Consensus 431 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~ 510 (909)
..+|++++.+|++.|++++|.++|++|.+ .|+.||..++..++.+|++.
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~-------------------------------~g~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQ-------------------------------DNVSPDEITIASVLSACACL 402 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHH-------------------------------hCCCCCceeHHHHHHHHhcc
Confidence 99999999999999998888877777665 88999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHH
Q 002549 511 GRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQV 590 (909)
Q Consensus 511 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 590 (909)
|+++.|.++++.+.+.|..++..+++.++.+|+++|++++|.++|+++.+ ++..+|+++|.+|++.|+.++|+.+
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-----KDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999864 5788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCC
Q 002549 591 FSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCA 670 (909)
Q Consensus 591 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 670 (909)
|++|.. ++.||..||..++.+|++.|..+.+.+++..+.+.| .
T Consensus 478 f~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g------------------------------------~ 520 (857)
T PLN03077 478 FRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG------------------------------------I 520 (857)
T ss_pred HHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC------------------------------------C
Confidence 999986 699999999999999999999888888877766544 5
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHH
Q 002549 671 PVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLM 750 (909)
Q Consensus 671 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 750 (909)
.+|..++|+|+.+|+++|++++|.++|+.+ .||..+|+.++.+|+++|+.++|+++|++|.+.|+.||..||+.+
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Confidence 568889999999999999999999999987 579999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCC
Q 002549 751 LDAFARSGNIFEVKKIYHGMK-AAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIED 829 (909)
Q Consensus 751 ~~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 829 (909)
+.+|.+.|++++|.++|+.|. +.|+.|+..+|++++++|++.|++++|++++++|. ++||..+|++|+.+|..+|+
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999 68999999999999999999999999999999984 79999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh
Q 002549 830 FKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLD 885 (909)
Q Consensus 830 ~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 885 (909)
.+.|....+++++ +.|+. ..|..+++.|+..|+|++|.++++.|.+.|+.+++.
T Consensus 673 ~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 673 VELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred hHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999999 89965 777888999999999999999999999998887753
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-77 Score=702.47 Aligned_cols=675 Identities=18% Similarity=0.244 Sum_probs=632.4
Q ss_pred ChhhHHHHHHH-hccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCHHHHHHHH
Q 002549 44 TPTDYCFVVKW-VGQVSWQRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESA-VDDTVQVYNAMM 121 (909)
Q Consensus 44 ~~~~~~~~~~~-~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~ 121 (909)
++..+..+++. +..|++..|+.+|..|.. .+.+|+..+|..++..+.+.+.++.+..++..+... ..+++.++|+|+
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 34445555554 456799999999999954 458899999999999999999999999999987655 457788999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002549 122 GIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESN 201 (909)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 201 (909)
.+|++.|+++.|+++|++|. .||.++||++|.+|++.|.+ ++|..+|++|...|+.||.+||++++.+|++.++
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~--~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYF--DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCH--HHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 99999999999999999997 47999999999999999974 6799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002549 202 LEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISEN 281 (909)
Q Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 281 (909)
+..+.+++..|.+.|+.||+.+||+||.+|++.|++++|.++|++|.. ||.++|+.+|.+|++.|++++|.++|.+
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999964 6899999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 002549 282 MLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTL 361 (909)
Q Consensus 282 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 361 (909)
|.+.|+.||..+|+.++.+|++.|+.+.|.+++..|.+.|..||..+|++|+.+|++.|++++|.++|++|. .||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 4789
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002549 362 RTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVL 441 (909)
Q Consensus 362 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 441 (909)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+++.|+.+|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 002549 442 GRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIE 521 (909)
Q Consensus 442 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~ 521 (909)
++.|++++|.++|++|.+.+...++.+...+.+.|+.++|+.+|++|.. ++.||..|+..++.+|++.|..+.+.+++.
T Consensus 435 ~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred HHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 9999999999999999988888889999999999999999999999985 699999999999999999999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC
Q 002549 522 FVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEP 601 (909)
Q Consensus 522 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 601 (909)
.+.+.+..++..++++++.+|+++|++++|.++|+.+ +++..+|+++|.+|++.|+.++|+++|++|.+.|+.|
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999887 4699999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHH-HcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHH
Q 002549 602 SEDLYRSMVVAYCKMDFPETAHFIADQAE-KKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNAL 680 (909)
Q Consensus 602 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 680 (909)
|..||..++.+|++.|.+++|..+|+.|. ..|+.|+ ...|..+++.|++.|++++|.++++++. ..||..+|++|
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aL 663 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGAL 663 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHH
Confidence 99999999999999999999999999998 5788874 5788999999999999999999999874 67899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHH
Q 002549 681 IKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKS 745 (909)
Q Consensus 681 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 745 (909)
+.+|...|+.+.+....+++++..|. +...|..+.+.|+..|+|++|.++.+.|.+.|+++++.
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999887665 66778888899999999999999999999998887764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-66 Score=587.66 Aligned_cols=545 Identities=17% Similarity=0.223 Sum_probs=335.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHH
Q 002549 78 PNARMLATILAVLGKANQENLAVETFMRAESA--VDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTL 155 (909)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 155 (909)
++...|..++..+++.|++++|+++|+.|... .+++..+++.++..|.+.|.+++|+.+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 34445555666666666666666666666544 234455566666666666666666666666653 666666666
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 002549 156 INARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCG 235 (909)
Q Consensus 156 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 235 (909)
|.+|++.|++ +.|..+|+.|.+.|+.||.++|++||.+|++.|++++|.++|++|.+.|+.||.++|+.||.+|++.|
T Consensus 444 L~a~~k~g~~--e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 444 MSVCASSQDI--DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHhCcCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 6666666643 44666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002549 236 LFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLK--MGFGKDEMTYNTIIHMYGKQGQHDVALQL 313 (909)
Q Consensus 236 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 313 (909)
++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666666666666666666666666666666666666666666654 45566666666666666666666666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002549 314 YRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIR 393 (909)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (909)
|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 002549 394 PDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILV 473 (909)
Q Consensus 394 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 473 (909)
||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.+++++|.+
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~-------------- 747 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-------------- 747 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------
Confidence 666666666666666666666666666666666666666666666666666666666666666554
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 002549 474 KGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALE 553 (909)
Q Consensus 474 ~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 553 (909)
.|+.||..+|..++.+|++.|++++|.+++..+.+.+..++..+++.++.++. +.+++|..
T Consensus 748 -----------------~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~ 808 (1060)
T PLN03218 748 -----------------LGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACA 808 (1060)
T ss_pred -----------------cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhh
Confidence 55666666666666666666666666666666666666666666666654422 12333333
Q ss_pred HHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 002549 554 EYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKG 633 (909)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 633 (909)
..+.+.... + .......+..++|+.+|++|++.|+.||..||..++.+++..+..+.+..+++.+...+
T Consensus 809 l~~~v~~f~--~---------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 809 LGEPVVSFD--S---------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred hhhhhhhhh--c---------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 332222110 0 00111112234566666666666666666666666655555566666555555544333
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChH
Q 002549 634 IPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRK 675 (909)
Q Consensus 634 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 675 (909)
.. .+...|+.+++.+++. .++|..+++++.+.|+.|+..
T Consensus 878 ~~-~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 878 DS-QKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CC-cchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 22 2345566666655321 246666666666666666543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-66 Score=587.66 Aligned_cols=559 Identities=17% Similarity=0.262 Sum_probs=490.1
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 002549 98 LAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGC-EPDLVSFNTLINARLRSGAMVPNLGVDLLNE 176 (909)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~ 176 (909)
.++...+..... .++...|..++..|++.|++++|+++|++|.+.|+ +++..+++.++.+|++.|.. .+|..+|+.
T Consensus 355 ~~~~~~~~~~~~-~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~--~eAl~lf~~ 431 (1060)
T PLN03218 355 NSLAAYNGGVSG-KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAV--KEAFRFAKL 431 (1060)
T ss_pred hhHHHhccccCC-CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCH--HHHHHHHHH
Confidence 334444444333 56778899999999999999999999999999986 57888888999999998864 568888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH
Q 002549 177 VRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDA 256 (909)
Q Consensus 177 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 256 (909)
|.. ||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 432 M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv 507 (1060)
T PLN03218 432 IRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507 (1060)
T ss_pred cCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH
Confidence 864 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHH
Q 002549 257 VTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKL--SGRNPDVVTYTVLID 334 (909)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~ 334 (909)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ 587 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999976 578999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 002549 335 SLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNK 414 (909)
Q Consensus 335 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 414 (909)
+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++
T Consensus 588 ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCC
Q 002549 415 AMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIE 494 (909)
Q Consensus 415 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 494 (909)
|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ .|+.
T Consensus 668 A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~-------------------------------~g~~ 716 (1060)
T PLN03218 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-------------------------------IKLR 716 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------------------------------cCCC
Confidence 999999999999999999999999999999999999999998876 7889
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHH
Q 002549 495 LDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESL 574 (909)
Q Consensus 495 ~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 574 (909)
||..+|+.++.+|++.|++++|.++|+.|.+.+..|+..++..++..|++.|+++.|.++|..+.+.+ +.|+..+|+.+
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsL 795 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCI 795 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888 67899999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCC
Q 002549 575 IHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKL 654 (909)
Q Consensus 575 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 654 (909)
+..|. +++++|..+.+.+...+. .......+..+.|..+|++|.+.|+.|+.. ++..++..++..+.
T Consensus 796 Iglc~--~~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~-T~~~vL~cl~~~~~ 862 (1060)
T PLN03218 796 TGLCL--RRFEKACALGEPVVSFDS----------GRPQIENKWTSWALMVYRETISAGTLPTME-VLSQVLGCLQLPHD 862 (1060)
T ss_pred HHHHH--HHHHHHhhhhhhhhhhhc----------cccccccchHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccccc
Confidence 87654 356777666555543210 011112234567999999999999888644 45556677777788
Q ss_pred hHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc
Q 002549 655 WQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVD 710 (909)
Q Consensus 655 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 710 (909)
...+.++++.+...+.+++..+|+.++.++.+. .++|..+|+.|.+.|..|+..
T Consensus 863 ~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 863 ATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 888888888877776777888888888876322 357888888888888887764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-60 Score=541.74 Aligned_cols=476 Identities=20% Similarity=0.302 Sum_probs=422.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002549 218 QPDLWTYNAMISVYGRCGLFEKAEQLFKELESKG-FFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNT 296 (909)
Q Consensus 218 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 296 (909)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4466788888888888888888888888888754 678889999999999999999999999999998898899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002549 297 IIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGN 376 (909)
Q Consensus 297 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 376 (909)
++.+|++.|+++.|.++|++|. .||..+|++++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999987 488889999999999999999999999999888888888888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 002549 377 RLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRD 456 (909)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 456 (909)
.+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++|.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--------------------------------- 286 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--------------------------------- 286 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---------------------------------
Confidence 88888888888888888888888888888888888888877777663
Q ss_pred HHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHH
Q 002549 457 MKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQ 536 (909)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 536 (909)
T Consensus 287 -------------------------------------------------------------------------------- 286 (697)
T PLN03081 287 -------------------------------------------------------------------------------- 286 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 002549 537 AFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKM 616 (909)
Q Consensus 537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 616 (909)
+++..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||..++.+|++.
T Consensus 287 ----------------------------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 287 ----------------------------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred ----------------------------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 1244567777777778888888888888888889999999999999998888
Q ss_pred CChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHH
Q 002549 617 DFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAV 696 (909)
Q Consensus 617 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 696 (909)
|++++|.+++..+.+. |.++|..++++|+.+|+++|++++|.++
T Consensus 339 g~~~~a~~i~~~m~~~------------------------------------g~~~d~~~~~~Li~~y~k~G~~~~A~~v 382 (697)
T PLN03081 339 ALLEHAKQAHAGLIRT------------------------------------GFPLDIVANTALVDLYSKWGRMEDARNV 382 (697)
T ss_pred cchHHHHHHHHHHHHh------------------------------------CCCCCeeehHHHHHHHHHCCCHHHHHHH
Confidence 8887777776666553 4667899999999999999999999999
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCC
Q 002549 697 FNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA-AGY 775 (909)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~ 775 (909)
|++| ..||..+||.++.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+
T Consensus 383 f~~m----~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 383 FDRM----PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred HHhC----CCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 9999 45899999999999999999999999999999999999999999999999999999999999999986 699
Q ss_pred CchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC-hhhHHH
Q 002549 776 FPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-EDSFNT 854 (909)
Q Consensus 776 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 854 (909)
.|+..+|++++++|++.|++++|.++++++ ++.|+..+|++++.+|+.+|+++.|..+++++.+ +.|+ ..+|..
T Consensus 459 ~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~ 533 (697)
T PLN03081 459 KPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVV 533 (697)
T ss_pred CCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHH
Confidence 999999999999999999999999999876 5799999999999999999999999999999987 8896 589999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 002549 855 LIIMYCRDCRPEEGLSLMHEMRKLGLEPK 883 (909)
Q Consensus 855 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 883 (909)
++.+|++.|++++|.+++++|.+.|+.+.
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999887543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-59 Score=535.30 Aligned_cols=473 Identities=18% Similarity=0.274 Sum_probs=421.5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 002549 112 DTVQVYNAMMGIYARNGRFQKVQELLDLMRKRG-CEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYN 190 (909)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 190 (909)
.+..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.+.. +.+..++..|.+.|+.||..+||
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~--~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI--RCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHhCCCcchHHHH
Confidence 456689999999999999999999999999864 789999999999999999864 56899999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002549 191 TIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREG 270 (909)
Q Consensus 191 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 270 (909)
.|+.+|++.|+++.|.++|++|. .||.++||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999997 58999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002549 271 NVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMS 350 (909)
Q Consensus 271 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (909)
..+.+.+++..+.+.|+.+|..+|+.|+++|+++|++++|.++|++|. .+|.++|+++|.+|++.|++++|+++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997 5799999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 002549 351 EMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPD 430 (909)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 430 (909)
+|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|++.|++++|.++|++|. .||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 579
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 002549 431 QALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVS 510 (909)
Q Consensus 431 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~ 510 (909)
..+|++||.+|++.|+.++|.++|++|.+ .|+.||..||+.++.+|.+.
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~-------------------------------~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIA-------------------------------EGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------------hCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999998888877777665 89999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHH
Q 002549 511 GRHLEACELIEFVKQH-ASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQ 589 (909)
Q Consensus 511 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 589 (909)
|.+++|.++|+.|.+. +. .|+..+|+.++.+|++.|++++|.+
T Consensus 440 g~~~~a~~~f~~m~~~~g~------------------------------------~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRI------------------------------------KPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred CcHHHHHHHHHHHHHhcCC------------------------------------CCCccchHhHHHHHHhcCCHHHHHH
Confidence 9999999999888753 33 4566677777777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcC
Q 002549 590 VFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRC 669 (909)
Q Consensus 590 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 669 (909)
++++| +..|+..+|..++.+|...|+.+.|...++++.+ +.|+
T Consensus 484 ~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~-------------------------------- 526 (697)
T PLN03081 484 MIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPE-------------------------------- 526 (697)
T ss_pred HHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCC--------------------------------
Confidence 77665 4678888888888888888888777777766643 4443
Q ss_pred CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002549 670 APVDRKVWNALIKAYAASGCYERARAVFNTMMRDGP 705 (909)
Q Consensus 670 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 705 (909)
+...|..|+++|++.|++++|.++++.|.+.|.
T Consensus 527 ---~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 527 ---KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred ---CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 344555555666666666666666666665554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=480.66 Aligned_cols=828 Identities=13% Similarity=0.032 Sum_probs=567.9
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCH-----------------
Q 002549 52 VKWVGQVSWQRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTV----------------- 114 (909)
Q Consensus 52 ~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------- 114 (909)
...+.+|++..|+..|+...... |.++..+..+..++.+.|+++.|...|+++....+++.
T Consensus 30 ~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 107 (899)
T TIGR02917 30 KSYLQKNKYKAAIIQLKNALQKD--PNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQ 107 (899)
T ss_pred HHHHHcCChHhHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHH
Confidence 33444556666666665554332 44555555566666666666666666655554433333
Q ss_pred ------------------HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 002549 115 ------------------QVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNE 176 (909)
Q Consensus 115 ------------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~ 176 (909)
..+..+...|...|++++|...|+++.+.. +.+...+..+...+...|+ .++|..+++.
T Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~--~~~A~~~~~~ 184 (899)
T TIGR02917 108 QVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENR--FDEARALIDE 184 (899)
T ss_pred HHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCC--HHHHHHHHHH
Confidence 344444455555555555555555544432 1223344444444444443 2345555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH
Q 002549 177 VRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDA 256 (909)
Q Consensus 177 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 256 (909)
+.+.. +++..++..+...+...|++++|...|++..+.+ +.+..++..++..+...|++++|...++.+.+.... +.
T Consensus 185 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 261 (899)
T TIGR02917 185 VLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SP 261 (899)
T ss_pred HHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Cc
Confidence 44432 2234444555555555555555555555554443 334445555555555555555555555555443222 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 002549 257 VTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSL 336 (909)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 336 (909)
..+......+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...+
T Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 339 (899)
T TIGR02917 262 LAHYLKALVDFQKKNYEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQ 339 (899)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 222222223344555555555555555443 1222333344445556666666666666665543 23444555666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 002549 337 GKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAM 416 (909)
Q Consensus 337 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 416 (909)
.+.|++++|...++.+.... +.+...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.
T Consensus 340 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 417 (899)
T TIGR02917 340 LRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAI 417 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHH
Confidence 77777777777777766543 2355666667777777777777777777776643 234556666666777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHH---HHHHHHhcccHHHHHHHHHHHHHcCC
Q 002549 417 MLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQE---ISSILVKGECYDHAAEILRSAIRNGI 493 (909)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~ 493 (909)
..++.+.+... ........++..+.+.|++++|.++++.+....+..+.. +..++...|++++|...|+++++..
T Consensus 418 ~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 495 (899)
T TIGR02917 418 ADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE- 495 (899)
T ss_pred HHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-
Confidence 77777765421 123344455667777777777777777777665555443 4456777788888888888877643
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHH
Q 002549 494 ELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYES 573 (909)
Q Consensus 494 ~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 573 (909)
+.+...+..+...+...|++++|...++.+.+..+. +...+..++..+.+.|+.++|+..++++.... |.+...+..
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 572 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALA 572 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHH
Confidence 334455666777788888888888888888776654 45566777778888888888888888887665 667778888
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcC
Q 002549 574 LIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLK 653 (909)
Q Consensus 574 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 653 (909)
++..+...|++++|..+++.+... .+.+..++..+...+...|++++|+..++.+++ ..|+++..+..++..+...|
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 649 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA--LQPDSALALLLLADAYAVMK 649 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcC
Confidence 888888888888888888888754 245677888888888888999999999888887 56778888888899999999
Q ss_pred ChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHH
Q 002549 654 LWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQ 733 (909)
Q Consensus 654 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 733 (909)
++++|...++++.+. .|.+...+..++..+...|++++|..+++.+.+..+. +...+..++..+...|++++|.+.++
T Consensus 650 ~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 650 NYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred CHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999988876 5667888888888999999999999999998887765 66778888888999999999999999
Q ss_pred HHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCC
Q 002549 734 ELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPD 813 (909)
Q Consensus 734 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 813 (909)
++.+.+ |+..++..++.++.+.|++++|.+.++++.+.. +.+...+..++..|.+.|++++|++.|+++.+. .+++
T Consensus 728 ~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~ 803 (899)
T TIGR02917 728 KALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-APDN 803 (899)
T ss_pred HHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCC
Confidence 988765 333666678888999999999999999988753 346788889999999999999999999999874 2456
Q ss_pred HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 002549 814 LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLIS 892 (909)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 892 (909)
..+++.++..+...|+ ++|+++++++++ +.|+. ..+..++.++...|++++|.++++++.+.+.. ++.++..++.
T Consensus 804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 879 (899)
T TIGR02917 804 AVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLAL 879 (899)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHH
Confidence 6789999999999999 889999999999 78855 67779999999999999999999999976433 7889999999
Q ss_pred HHhccCCHHHHHHhhcC
Q 002549 893 AFGKQQQLEQAEELLKS 909 (909)
Q Consensus 893 ~~~~~g~~~~A~~~~~~ 909 (909)
++.+.|+.++|.+++++
T Consensus 880 ~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 880 ALLATGRKAEARKELDK 896 (899)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 99999999999998863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-47 Score=459.60 Aligned_cols=792 Identities=12% Similarity=0.067 Sum_probs=679.9
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 002549 56 GQVSWQRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQE 135 (909)
Q Consensus 56 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 135 (909)
..|++..|+..|...... ..+.+...+..+...+.+.|+++.|...|+++....+.+..++..+...+...|++++|..
T Consensus 102 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 180 (899)
T TIGR02917 102 LQGKFQQVLDELPGKTLL-DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARA 180 (899)
T ss_pred HCCCHHHHHHhhcccccC-CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHH
Confidence 456788888777654211 1344566778888899999999999999999988878888999999999999999999999
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002549 136 LLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAH 215 (909)
Q Consensus 136 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 215 (909)
+++++.+.. +++...+..+...+...|+ .++|...|+...+..+ .+..++..++..+...|++++|...++.+.+.
T Consensus 181 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~--~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 256 (899)
T TIGR02917 181 LIDEVLTAD-PGNVDALLLKGDLLLSLGN--IELALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKK 256 (899)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999998764 4567778888788888886 4679999999887654 46788899999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002549 216 NCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYN 295 (909)
Q Consensus 216 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 295 (909)
. +.+...+......+...|++++|...|+++.+.+.. +...+..+...+...|++++|...++.+.+.. +.+...+.
T Consensus 257 ~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 333 (899)
T TIGR02917 257 A-PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARR 333 (899)
T ss_pred C-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 5 344555555666778899999999999999886533 33445556667889999999999999998865 45677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002549 296 TIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAG 375 (909)
Q Consensus 296 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 375 (909)
.+...+.+.|++++|...++++.... +.+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|
T Consensus 334 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 411 (899)
T TIGR02917 334 LLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQG 411 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCC
Confidence 89999999999999999999998765 4567789999999999999999999999998764 236677888888999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 002549 376 NRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVR 455 (909)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 455 (909)
++++|.+.++.+.+... ........++..+.+.|++++|..+++.+... .+++..++..+...+...|++++|.+.++
T Consensus 412 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (899)
T TIGR02917 412 DPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFE 489 (899)
T ss_pred ChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999988643 23455667788899999999999999999875 35567889999999999999999999999
Q ss_pred HHHHhcCCChHH---HHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh
Q 002549 456 DMKELSGINMQE---ISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTP 532 (909)
Q Consensus 456 ~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 532 (909)
++.+..+..+.. +..++...|++++|...++++.... +.+...+..+...+...|+.++|...++.+...++. +.
T Consensus 490 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 567 (899)
T TIGR02917 490 KALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EI 567 (899)
T ss_pred HHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-ch
Confidence 999887777665 4467788999999999999998764 346677888999999999999999999999887665 45
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 002549 533 PLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVA 612 (909)
Q Consensus 533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 612 (909)
..+..++..|.+.|++++|+..++.+.... |.+...|..++.++...|++++|...|+.+.+.. +.+...+..+...
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 644 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADA 644 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 567788999999999999999999998765 7788999999999999999999999999998653 3456778888999
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHH
Q 002549 613 YCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYER 692 (909)
Q Consensus 613 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 692 (909)
+...|++++|...++++.. ..|++...+..++..+...|++++|..+++.+.+. .+.+...+..++.++...|++++
T Consensus 645 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALE--LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ-HPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcCChHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999987 67889999999999999999999999999999887 56788889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002549 693 ARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA 772 (909)
Q Consensus 693 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 772 (909)
|...|+++++.++.+ .++..++.++...|++++|.+.++++.+.. +.+..++..+...|...|++++|...|+++.+
T Consensus 722 A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 722 AIQAYRKALKRAPSS--QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHhhCCCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999976553 678889999999999999999999998865 45677888899999999999999999999998
Q ss_pred cCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC-Chh
Q 002549 773 AGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP-DED 850 (909)
Q Consensus 773 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 850 (909)
.. +++..+++.++..+.+.|+ ++|+.+++++.+ ..|+. .++..++.++...|++++|.++++++++ ..| ++.
T Consensus 799 ~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~ 872 (899)
T TIGR02917 799 KA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN--IAPEAAA 872 (899)
T ss_pred hC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCChH
Confidence 64 3577889999999999999 889999999987 34544 6788889999999999999999999999 667 678
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHH
Q 002549 851 SFNTLIIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 851 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 876 (909)
++.+++.+|++.|++++|.+++++|+
T Consensus 873 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 873 IRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999999999999986
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-29 Score=302.70 Aligned_cols=684 Identities=13% Similarity=0.089 Sum_probs=457.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHc
Q 002549 83 LATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRS 162 (909)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 162 (909)
+-..++.....++.+.|.+.+.++....|.++.++..++..+.+.|+.++|.+.+++..+.. |+...+..+.
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~------ 102 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSR------ 102 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHH------
Confidence 55667788889999999999999998888999999999999999999999999999999874 4433221111
Q ss_pred CCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHhHHH
Q 002549 163 GAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLW-TYNAMISVYGRCGLFEKAE 241 (909)
Q Consensus 163 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~ 241 (909)
..+. . ..|+......+...+.+.|++++|...|+.+.+.+ +|+.. ....+.......|+.++|+
T Consensus 103 ------------~~~~-~-~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~ 167 (1157)
T PRK11447 103 ------------TTML-L-STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAI 167 (1157)
T ss_pred ------------HHHH-h-cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHH
Confidence 1111 1 12444445666777889999999999999998765 44432 1111222223458899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002549 242 QLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSG 321 (909)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 321 (909)
+.|+++.+..+. +...+..+...+...|++++|.+.++++.+.. +. ....+...+..+...+
T Consensus 168 ~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~--~~---------------~~~aa~~~~~~l~~~~ 229 (1157)
T PRK11447 168 NQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP--AG---------------RDAAAQLWYGQIKDMP 229 (1157)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC--Cc---------------hHHHHHHHHHHHhccC
Confidence 999998887433 56667778888888899999999998887632 11 0111222222222222
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002549 322 RNPDV-VTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYS 400 (909)
Q Consensus 322 ~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 400 (909)
..+.. ..+...+..+-.....+.|...+..+......|.... ......+...|++++|+..|++..+.. +.+...+.
T Consensus 230 ~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~ 307 (1157)
T PRK11447 230 VSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALG 307 (1157)
T ss_pred CChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 11111 1222223333333344556666666544322333222 233455667788888888888877753 23667777
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhccc
Q 002549 401 VMLDIFLRFNETNKAMMLYQEMVSNGFTPDQ---ALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGEC 477 (909)
Q Consensus 401 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (909)
.+...+.+.|++++|...|++.++. .|+. ..|..++... .
T Consensus 308 ~Lg~~~~~~g~~~eA~~~l~~Al~~--~p~~~~~~~~~~ll~~~----~------------------------------- 350 (1157)
T PRK11447 308 ALGQAYSQQGDRARAVAQFEKALAL--DPHSSNRDKWESLLKVN----R------------------------------- 350 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCccchhHHHHHHHhh----h-------------------------------
Confidence 7788888888888888888887764 2321 1122111100 0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 002549 478 YDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSN 557 (909)
Q Consensus 478 ~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 557 (909)
..........+...|++++|...++.+++..|. +...+..+...+...|++++|++.|++
T Consensus 351 -------------------~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 351 -------------------YWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred -------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 000111123334455555555555555554443 233344455556666666666666666
Q ss_pred hhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 002549 558 AWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIE--------PSEDLYRSMVVAYCKMDFPETAHFIADQA 629 (909)
Q Consensus 558 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 629 (909)
+.+.. |.+...+..+...+. .++.++|+.+++.+...... .....+......+...|++++|+..++++
T Consensus 411 aL~~~--p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~A 487 (1157)
T PRK11447 411 ALRMD--PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQR 487 (1157)
T ss_pred HHHhC--CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 65543 445555555555553 34556666666544221000 01123445666778899999999999999
Q ss_pred HHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Q 002549 630 EKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTV 709 (909)
Q Consensus 630 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 709 (909)
++ +.|+++.++..++.+|...|++++|+..++++++. .|.++..+..+...+...|++++|+..++++......++.
T Consensus 488 l~--~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~-~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~ 564 (1157)
T PRK11447 488 LA--LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ-KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNI 564 (1157)
T ss_pred HH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhH
Confidence 88 78999999999999999999999999999999876 4667777777777778889999999999887543222222
Q ss_pred c---------cHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHH
Q 002549 710 D---------SINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMY 780 (909)
Q Consensus 710 ~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 780 (909)
. .+..++..+...|++++|.++++. .+.+...+..+...+.+.|++++|+..|+++.+.. +.+..
T Consensus 565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~ 638 (1157)
T PRK11447 565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNAD 638 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 1 123456678899999999999882 23445566778899999999999999999999853 23678
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-------hhH
Q 002549 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-------DSF 852 (909)
Q Consensus 781 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~ 852 (909)
.+..++..|...|++++|++.++.+.+ ..|+. .++..+..++...|++++|.++++++++ ..|+. ..+
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~~~~~~~~~~a~~~ 714 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP--QAKSQPPSMESALVL 714 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh--hCccCCcchhhHHHH
Confidence 889999999999999999999999886 45554 5677788889999999999999999998 44421 356
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHH-cCCCC
Q 002549 853 NTLIIMYCRDCRPEEGLSLMHEMRK-LGLEP 882 (909)
Q Consensus 853 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p 882 (909)
..++..+...|++++|+..|+++.. .++.|
T Consensus 715 ~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 715 RDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 6778999999999999999999975 44544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-30 Score=308.43 Aligned_cols=650 Identities=13% Similarity=0.067 Sum_probs=416.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHH---------
Q 002549 189 YNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTY--------- 259 (909)
Q Consensus 189 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--------- 259 (909)
....++.+...++.+.|.+.+.++.... +.|+.++..++..+.+.|+.++|.+.+++..+.. |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHh
Confidence 3444566777788888888888887764 5567778888888888888888888888887764 332222
Q ss_pred --------HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 002549 260 --------NSLLYAFAREGNVEKVKEISENMLKMGFGKDEM-TYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYT 330 (909)
Q Consensus 260 --------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 330 (909)
......+.+.|++++|.+.++.+.+.. +++.. ....+.......|+.++|++.++++.+.. +.+...+.
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 122223444555555555555554432 12211 11111111112345555555555554442 11233344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 002549 331 VLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPD-HLAYSVMLDIFLRF 409 (909)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 409 (909)
.+...+...|+.++|+..++++.... +. ....+...+..+...+..++ ...+...+..+-..
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~--~~---------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~ 248 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSP--AG---------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDG 248 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCC--Cc---------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCc
Confidence 44444555555555555555544321 00 00001111111111111111 01111111111111
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHH
Q 002549 410 NETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAI 489 (909)
Q Consensus 410 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 489 (909)
...+.|...+.........|+... ... ...+...|++++|+..|++++
T Consensus 249 ~~~~~A~~~L~~~~~~~~dp~~~~-~~~-------------------------------G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 249 DSVAAARSQLAEQQKQLADPAFRA-RAQ-------------------------------GLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred hHHHHHHHHHHHHHHhccCcchHH-HHH-------------------------------HHHHHHCCCHHHHHHHHHHHH
Confidence 122233333333322211111110 111 223333444445555554444
Q ss_pred HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh-------------hHHHHHHHHHhcCCHHHHHHHHH
Q 002549 490 RNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPP-------------LTQAFIIMLCKAQKLDAALEEYS 556 (909)
Q Consensus 490 ~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~g~~~~A~~~~~ 556 (909)
+.. +.+...+..+..++...|++++|...|+.+++..+..... ........+.+.|++++|++.|+
T Consensus 297 ~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 297 RAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 332 2244555566666666666666666666666655443211 11223556778999999999999
Q ss_pred HhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCC--
Q 002549 557 NAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGI-- 634 (909)
Q Consensus 557 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 634 (909)
++.... |.+...+..+..++...|++++|++.|++..+.. +.+...+..+...+. .+++++|..+++.+.....
T Consensus 376 ~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 376 QARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHH
Confidence 999876 7788899999999999999999999999998643 223555666666654 4678999888765432100
Q ss_pred -----CCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Q 002549 635 -----PFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTV 709 (909)
Q Consensus 635 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 709 (909)
..-....+..++..+...|++++|++.|+++++. .|.++.++..++.+|...|++++|...++++++..|. +.
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~ 529 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL-DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DP 529 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CH
Confidence 0001234567888899999999999999999987 5678889999999999999999999999999987765 55
Q ss_pred ccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHH
Q 002549 710 DSINGLLQALIVDGRLNELYVVIQELQDMDFKISKS---------SILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMY 780 (909)
Q Consensus 710 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 780 (909)
..+..+...+...|++++|+..++++......++.. .+..+...+...|+.++|..+++. .+++..
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~ 604 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTR 604 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCch
Confidence 556666667788999999999999876543332221 223456788899999999999872 234566
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHCCCCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHH
Q 002549 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIM 858 (909)
Q Consensus 781 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 858 (909)
.+..+...+.+.|++++|++.|+++++ ..|+ ...+..++.+|...|++++|++.++++++ ..|+. .....++.+
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALA 680 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHH
Confidence 778899999999999999999999998 3565 57889999999999999999999999998 78865 667789999
Q ss_pred HHhcCChhhHHHHHHHHHHcCC--CC---ChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 859 YCRDCRPEEGLSLMHEMRKLGL--EP---KLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 859 ~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
+...|++++|.++++++.+... .| +...+..++..+...|+.++|...++
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999986321 22 23467778899999999999999875
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-27 Score=269.50 Aligned_cols=659 Identities=11% Similarity=-0.005 Sum_probs=431.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002549 197 SRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVK 276 (909)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 276 (909)
...|++++|+..|+...+.. +.+..++..|...|.+.|++++|+..+++..+.. |+...|..++..+ +++++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHH
Confidence 34499999999999998876 4458888999999999999999999999998873 4444444444333 8888999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 002549 277 EISENMLKMGFGKDEMTYNTIIHM--------YGKQGQHDVALQLYRDMKLSGRNPDVVTYTVL-IDSLGKANKISEAAN 347 (909)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~ 347 (909)
.+++++.+.. +.+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|+.
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999999876 4456666666655 6555 44444444 3333334445555544 889999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 002549 348 VMSEMLDASVKPTLRTYSALICGYAK-AGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNG 426 (909)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 426 (909)
++.++.+.+. .+..-...+...|.. .++ +.+..++.. .++.+......++..+.+.|+.++|..+++++...-
T Consensus 204 lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 9999998863 345556677777777 466 777777543 234678888899999999999999999999876542
Q ss_pred C-CCCHHHHHHHHHHHhcCCCHH-HHHHHH-HHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002549 427 F-TPDQALYEIMIGVLGRENKGE-EIRKVV-RDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSI 503 (909)
Q Consensus 427 ~-~~~~~~~~~ll~~~~~~g~~~-~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l 503 (909)
. .|+..+|..++.-+ +... .+..-+ ++.........-.+...+.+.+.++.+.++. .+.|..... .+
T Consensus 278 ~~~~~~~~~~~~l~r~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~ 347 (987)
T PRK09782 278 TTDAQEKSWLYLLSKY---SANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEML-EE 347 (987)
T ss_pred cCCCccHHHHHHHHhc---cCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHH-HH
Confidence 2 35555555544332 2221 111111 1111100001112345667777777555442 133333322 22
Q ss_pred HHHHh-ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhcc-CCcccchhhHHHHHHHHHhc
Q 002549 504 LSSYN-VSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGF-GFFSKSKTMYESLIHSCEYN 581 (909)
Q Consensus 504 ~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~ 581 (909)
-.+.. ..+...++...+..+.+..+. +......+.....+.|+.++|..+|+..... +....+......++..+..+
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 426 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESH 426 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhC
Confidence 22222 336777777777777665443 3444555666677888888888888888762 11111334455777777777
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHH-cCCCCC--CchHHHHHHHHhhhcCChHHH
Q 002549 582 ERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEK-KGIPFE--DLSIYVDIIDAYGRLKLWQKA 658 (909)
Q Consensus 582 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~--~~~~~~~l~~~~~~~~~~~~A 658 (909)
+......++..-. .+++...- |.-.|+..++...++.... .+..|+ +..++..++.++.. ++.++|
T Consensus 427 ~~~~~~~~~~~l~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 427 PYLATPAKVAILS----KPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred CcccchHHHHHhc----cccccchh------HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 6633222221111 11111111 1122333333333333322 225566 77888888888876 788888
Q ss_pred HHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhC
Q 002549 659 ESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDM 738 (909)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 738 (909)
+..+.+.... .|+......++..+...|++++|...|+++.... |+...+..++.++.+.|++++|...+++..+.
T Consensus 496 i~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 496 LYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888877765 2343333344555567888999998888876542 33445667777888888988899888888876
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhH
Q 002549 739 DFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIW 817 (909)
Q Consensus 739 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~ 817 (909)
+. .....+..+.......|++++|...+++.++.. |+...+..++..+.+.|++++|+..++++++ ..|+. ..+
T Consensus 572 ~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~ 646 (987)
T PRK09782 572 GL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQ 646 (987)
T ss_pred CC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 52 222233333444455688999999988888743 6677888888888889999999999988887 45655 567
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHh
Q 002549 818 NSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK-LDTYKSLISAFG 895 (909)
Q Consensus 818 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 895 (909)
+.++.++...|++++|++.++++++ +.|+. ..+.+++.++...|++++|+..+++..+ ..|+ ..+....+....
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHH
Confidence 7777788888899999999999888 78854 7788888999999999999999888884 4565 355556666677
Q ss_pred ccCCHHHHHHhh
Q 002549 896 KQQQLEQAEELL 907 (909)
Q Consensus 896 ~~g~~~~A~~~~ 907 (909)
+..+++.|.+-+
T Consensus 723 ~~~~~~~a~~~~ 734 (987)
T PRK09782 723 QRFNFRRLHEEV 734 (987)
T ss_pred HHHHHHHHHHHH
Confidence 777777776644
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-25 Score=254.83 Aligned_cols=682 Identities=10% Similarity=0.015 Sum_probs=356.0
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHH
Q 002549 91 GKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLG 170 (909)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a 170 (909)
...|++++|+..|+++....|.++.++..|...|...|++++|+..+++..+. .|+...|..++..+ ++ ..+|
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~--~~kA 127 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PV--EVKS 127 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---cc--ChhH
Confidence 34489999999999998888888999999999999999999999999988876 45444444433222 22 2345
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCHhHHH
Q 002549 171 VDLLNEVRRSGLRPDIITYNTIISA--------CSRESNLEEAMKVYGDLEAHNCQPDLWTYNAM-ISVYGRCGLFEKAE 241 (909)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~ 241 (909)
..+++++.+..+. +..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|+
T Consensus 128 ~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 128 VTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 6666666654322 23333333333 4333 33333333 2222122233333333 55666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002549 242 QLFKELESKGFFPDAVTYNSLLYAFAR-EGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLS 320 (909)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 320 (909)
+++.++.+.+.. +..-...+..+|.. .++ +.+..++.. .+..+...+..++..|.+.|+.++|.++++++...
T Consensus 203 ~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 203 TLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 666666655432 23333344444444 234 444444221 12234555555555555555555555555554322
Q ss_pred CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HH
Q 002549 321 GRN-PDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDH-LA 398 (909)
Q Consensus 321 ~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~ 398 (909)
-.. |+..+|.-++ .+.+... ..|..-|.+ + ..++. ..
T Consensus 277 ~~~~~~~~~~~~~l---~r~~~~~----------------------------------~~~~~~~~~--~--~~~~~~~~ 315 (987)
T PRK09782 277 FTTDAQEKSWLYLL---SKYSANP----------------------------------VQALANYTV--Q--FADNRQYV 315 (987)
T ss_pred ccCCCccHHHHHHH---HhccCch----------------------------------hhhccchhh--h--hHHHHHHH
Confidence 111 2222222221 1111111 001111111 0 00110 11
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHhcCCChHH---HHHHHH
Q 002549 399 YSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIG--VLGRENKGEEIRKVVRDMKELSGINMQE---ISSILV 473 (909)
Q Consensus 399 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~ 473 (909)
...++..+.+.++++.+.++.. +.|..... .++ .....+...++.+.++.+.+..+..+.. .+...+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~ 387 (987)
T PRK09782 316 VGATLPVLLKEGQYDAAQKLLA------TLPANEML--EERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLM 387 (987)
T ss_pred HHHHHHHHHhccHHHHHHHHhc------CCCcchHH--HHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 1123455555666654443321 23322221 222 1122355556666666666654544444 345566
Q ss_pred hcccHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 002549 474 KGECYDHAAEILRSAIRN-G-IELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAA 551 (909)
Q Consensus 474 ~~~~~~~a~~~~~~~~~~-~-~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 551 (909)
++|++++|..++++.... + ..++......++..|...+......++.......+.. .. .....+.-....+
T Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~----~~---~~~~~~~~~~~~~ 460 (987)
T PRK09782 388 QNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLA----EQ---RQWQSQLPGIADN 460 (987)
T ss_pred HcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccc----hh---HHHHhhhhhhhhh
Confidence 777777777777777652 1 2223333446677777766644433332221110000 00 0000011111222
Q ss_pred HHHHHHhhccCCccc--chhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 002549 552 LEEYSNAWGFGFFSK--SKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQA 629 (909)
Q Consensus 552 ~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 629 (909)
...+.++.... |+ +...|..+..++.. ++.++|+..+.+.... .|+...
T Consensus 461 ~~~~~~al~~~--p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~------------------------ 511 (987)
T PRK09782 461 CPAIVRLLGDM--SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ------------------------ 511 (987)
T ss_pred HHHHHHhcccC--CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH------------------------
Confidence 33333333221 44 55556666655554 5555566655554432 233222
Q ss_pred HHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Q 002549 630 EKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTV 709 (909)
Q Consensus 630 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 709 (909)
...++..+...|++++|...++++... +|+...+..++.++.+.|++++|...++++++..|. +.
T Consensus 512 ------------~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~ 576 (987)
T PRK09782 512 ------------HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DN 576 (987)
T ss_pred ------------HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cH
Confidence 222333334555555555555554432 233334445555666666666666666666665433 21
Q ss_pred ccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 002549 710 DSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLF 789 (909)
Q Consensus 710 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 789 (909)
..+..+...+...|++++|...+++..+.. |+...+..+..++.+.|++++|...+++..... +.+...++.+...+
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL 653 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYAL 653 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 222222222333466666666666666544 234555666667777777777777777777643 22456677777778
Q ss_pred hccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhh
Q 002549 790 CKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEE 867 (909)
Q Consensus 790 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 867 (909)
...|++++|++.++++++ ..|+. ..+..++.++...|++++|+..++++++ +.|+. .+....++...+..+++.
T Consensus 654 ~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~ 729 (987)
T PRK09782 654 WDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRR 729 (987)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHH
Confidence 888888888888888876 34543 6677778888888888888888888888 77866 566677777777777788
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 002549 868 GLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQ 899 (909)
Q Consensus 868 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 899 (909)
|.+-+++.. .+.|+..+.....+.+...|+
T Consensus 730 a~~~~~r~~--~~~~~~~a~~~~g~~~~~~~~ 759 (987)
T PRK09782 730 LHEEVGRRW--TFSFDSSIGLRSGAMSTANNN 759 (987)
T ss_pred HHHHHHHHh--hcCccchhccccchHhhhccc
Confidence 887777766 345554444444444444444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-22 Score=213.78 Aligned_cols=562 Identities=11% Similarity=0.101 Sum_probs=290.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002549 202 LEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESK--GFFPDAVTYNSLLYAFAREGNVEKVKEIS 279 (909)
Q Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 279 (909)
++.|...|....+.. ++|+..+-.-.......|++..|+.+|...... ...||+.. .+..++.+.|+.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 466666666665554 444444444444444556666666666664433 22333221 2223444666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002549 280 ENMLKMGFGKDEMTYNTIIHMYGKQ---GQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDAS 356 (909)
Q Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 356 (909)
....+.+. .++.++..|.-.-... ..+..+..++...-... +-+++..+.|...|...|+++.++.+...+....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 66665431 2222332222221111 22344444444443322 2345555666666666666666666666665432
Q ss_pred CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHH
Q 002549 357 VK--PTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPD-QAL 433 (909)
Q Consensus 357 ~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~ 433 (909)
.. .-...|..+.++|...|++++|...|.+..+.....-+..+-.|...+.+.|+++.+...|+...+. .|| ..+
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~et 378 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYET 378 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHH
Confidence 11 1123455566666666666666666655554321111233344556666666666666666666654 333 333
Q ss_pred HHHHHHHHhcCC----CHHHHHHHHHHHHHhcCCChHHH---HHHHHhcccHHHHHHHHHHHH----HcCCCCCHHHHHH
Q 002549 434 YEIMIGVLGREN----KGEEIRKVVRDMKELSGINMQEI---SSILVKGECYDHAAEILRSAI----RNGIELDHEKLLS 502 (909)
Q Consensus 434 ~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~----~~~~~~d~~~~~~ 502 (909)
...|...|...+ ..+.|..++.+..+..+.+.+.. +.++....-+.. +..|..+. ..+-.+.++.++.
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 344444443332 33444444444444333333321 122222221111 33332222 2333345555555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHH
Q 002549 503 ILSSYNVSGRHLEACELIEFVKQH---ASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCE 579 (909)
Q Consensus 503 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 579 (909)
+...+...|.+..|...|..+... ....+.. -.++..+-..+..++.
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~------------------------------~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEG------------------------------KSTNLTLKYNLARLLE 507 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc------------------------------ccchhHHHHHHHHHHH
Confidence 555555666666665555555433 0000000 0111222344455555
Q ss_pred hcccHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHH
Q 002549 580 YNERFAEASQVFSDMRFYNIEPSED-LYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKA 658 (909)
Q Consensus 580 ~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 658 (909)
..++++.|.++|..+... .|.-. .|..++......++..+|...++.++. ++..++.++..+++.+.+...|..|
T Consensus 508 ~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred hhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhccc
Confidence 556666666666666543 23322 233332222233455566666666655 4555666777777777777777777
Q ss_pred HHHHHHHHhcCC-CCChHhHHHHHHHHHHc------------CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCch
Q 002549 659 ESLVGCLRQRCA-PVDRKVWNALIKAYAAS------------GCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRL 725 (909)
Q Consensus 659 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 725 (909)
.+-|+.+.+.-. .+|+.+.-+|++.|.+. +.+++|+++|.++++.+|+ |..+-|.++.+++..|++
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCc
Confidence 776666554322 23555555666655432 4566777777777777666 666777777777777777
Q ss_pred hhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHhccCchHHHHHHHHH
Q 002549 726 NELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAA-GYFPTMYLYRVMSGLFCKGKRVRDVEAMVSE 804 (909)
Q Consensus 726 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 804 (909)
.+|..+|.+..+... ....+|..+.++|...|.+..|+++|+...+. ....+..+...|..++.+.|++.+|.+.+..
T Consensus 663 ~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 663 SEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred hHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 777777777766543 22234444667777777777777777777653 3234566667777777777777777777766
Q ss_pred HHH
Q 002549 805 MKE 807 (909)
Q Consensus 805 ~~~ 807 (909)
+..
T Consensus 742 a~~ 744 (1018)
T KOG2002|consen 742 ARH 744 (1018)
T ss_pred HHH
Confidence 665
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-26 Score=226.47 Aligned_cols=448 Identities=13% Similarity=0.092 Sum_probs=200.9
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHH---HHHHHHh
Q 002549 399 YSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQ-ALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQE---ISSILVK 474 (909)
Q Consensus 399 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~ 474 (909)
...|..-..+.|++++|.+.-...-.. .|+. ...-.+-..+....+.+.....-....+..+.-.+. +.+++..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 344555556667777776654443322 1211 111112223444444444333333333323322222 3344445
Q ss_pred cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 002549 475 GECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEE 554 (909)
Q Consensus 475 ~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 554 (909)
.|+++.|+..|+.+++.. +.....|..+..++...|+.+.|.+.|..+++.+|.. ......+...+...|++++|...
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l-~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDL-YCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcch-hhhhcchhHHHHhhcccchhHHH
Confidence 555555555555554431 1122334455555555555555555555555444331 11222333344445555555555
Q ss_pred HHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 002549 555 YSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPS-EDLYRSMVVAYCKMDFPETAHFIADQAEKKG 633 (909)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 633 (909)
|.++.+.. |.-..+|+.|...+..+|+.-.|+..|++..+ +.|+ ...|..+...|...+.+++|+..|.+++.
T Consensus 207 YlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~-- 280 (966)
T KOG4626|consen 207 YLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN-- 280 (966)
T ss_pred HHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--
Confidence 55544433 34444455555555555555555555554443 2232 23344444444444445555544444443
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Q 002549 634 IPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSIN 713 (909)
Q Consensus 634 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 713 (909)
+.|+...++..++-.|.++|.++-|+..|+++++. .|.-+..|+.|+.++...|++.+|.+.+++++...+. ...+.+
T Consensus 281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~ 358 (966)
T KOG4626|consen 281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL-QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMN 358 (966)
T ss_pred cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc-CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHH
Confidence 44444444444444455555555555555544443 2333444444555444445555555555554444333 334444
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHhc
Q 002549 714 GLLQALIVDGRLNELYVVIQELQDMDFKIS-KSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPT-MYLYRVMSGLFCK 791 (909)
Q Consensus 714 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 791 (909)
.|..+|.+.|+.++|..+|....+.. |. ....+.|...|-++|++++|+..|++.++ +.|+ ...|+.+...|-.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 44444445555555544444444322 11 22333444444444444444444444443 2333 2344444444444
Q ss_pred cCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChh
Q 002549 792 GKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPE 866 (909)
Q Consensus 792 ~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 866 (909)
.|+.+.|++.+.+++. +.|.. ...+.|...|...|+..+|+..|+++++ ++||. .++.+++.++--..+|.
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhccc
Confidence 4444444444444443 33332 3344444444444444444444444444 44443 44444444444333333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-22 Score=212.58 Aligned_cols=558 Identities=11% Similarity=0.067 Sum_probs=366.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002549 307 HDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDAS--VKPTLRTYSALICGYAKAGNRLEAEKTF 384 (909)
Q Consensus 307 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 384 (909)
++.|...|....+.. ++++..+-.-.......|++..|+.+|....... ..||+. ..+..++.+.|+.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 466666666665543 2333222222222334566666666666654332 223322 22334445666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcC---CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 002549 385 YCMRRSGIRPDHLAYSVMLDIFLRFN---ETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELS 461 (909)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 461 (909)
....+... .++.++..|...-.... .+..+..++...-... .-|+...+.|.+.|.-.|+++.+..+...+....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 66665321 12223333322222222 2334444444443321 2345555666666666666666666666555533
Q ss_pred CCChHH------HHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhH
Q 002549 462 GINMQE------ISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLT 535 (909)
Q Consensus 462 ~~~~~~------~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 535 (909)
...+.. +...+-..|++++|...|....+.....-...+..+.+.+...|+.+.+...|+.+....|.. ..+.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~-~etm 379 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN-YETM 379 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch-HHHH
Confidence 211111 234555667777777777766554333323446677888889999999999998888876653 4444
Q ss_pred HHHHHHHHhcC----CHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHH----HhCCCCCCHHHHH
Q 002549 536 QAFIIMLCKAQ----KLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDM----RFYNIEPSEDLYR 607 (909)
Q Consensus 536 ~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~ 607 (909)
..++..|...+ ..+.|..+..+..... |.+...|-.+...+.+..-+.. +..|... ...+..+.++..+
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHH
Confidence 55566665554 5677888888877764 7788999988888877665555 6666543 3455567888899
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHc---CCCCCC-----chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHH
Q 002549 608 SMVVAYCKMDFPETAHFIADQAEKK---GIPFED-----LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNA 679 (909)
Q Consensus 608 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 679 (909)
.+...+...|+++.|...++.++.. ..+++. .+.-+.++.++-..++.+.|.++|..+++. .|.-...|--
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke-hp~YId~ylR 535 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE-HPGYIDAYLR 535 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CchhHHHHHH
Confidence 9999999999999999999988865 122222 345778888999999999999999999887 4555666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCC-CCccHHHHHHHHHHHHh--
Q 002549 680 LIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMD-FKISKSSILLMLDAFAR-- 756 (909)
Q Consensus 680 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-- 756 (909)
++.+....++..+|...++.++..+.. ++..+..++..+.....+..|.+-|....+.. ..+|..+...|.+.|.+
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 664555568899999999999887654 66677778888888888888888777665543 33677777778886653
Q ss_pred ----------cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhc
Q 002549 757 ----------SGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTG 826 (909)
Q Consensus 757 ----------~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 826 (909)
.+..++|+++|.++++.. +-|...-|-++-.++..|++++|..+|.+..+.. .-+..+|..++.+|..
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVE 692 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHH
Confidence 234667788888777643 3367777778888888888888888888887742 2244678888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 827 IEDFKKTIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 827 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
+|++..|+++|+..+++-..- ++.....|+.++.+.|++.+|.+.+.....
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 888888888888887754322 457777888888888888888888877764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-25 Score=222.28 Aligned_cols=444 Identities=13% Similarity=0.092 Sum_probs=356.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002549 329 YTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLR 408 (909)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 408 (909)
...|..-..+.|++++|++.....-..+ ..+....-.+-..+.+..++++...--....+. .+.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 4556667778888888888766554443 122223333344556666666555443333332 12346778888888888
Q ss_pred cCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHH
Q 002549 409 FNETNKAMMLYQEMVSNGFTP-DQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRS 487 (909)
Q Consensus 409 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 487 (909)
.|++++|+.+++.+++. .| ....|..+..++...|+.+.|...+....+
T Consensus 129 rg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alq---------------------------- 178 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---------------------------- 178 (966)
T ss_pred hchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh----------------------------
Confidence 88888888888888865 44 356677777777777777777766655544
Q ss_pred HHHcCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCccc
Q 002549 488 AIRNGIELDHEKL-LSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSK 566 (909)
Q Consensus 488 ~~~~~~~~d~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 566 (909)
+.|+.... +.+.......|+..+|...+-.+++..+.. ...+..|...+...|++..|++.|+++.+.+ |.
T Consensus 179 -----lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f-AiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~ 250 (966)
T KOG4626|consen 179 -----LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCF-AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PN 250 (966)
T ss_pred -----cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCce-eeeehhcchHHhhcchHHHHHHHHHHhhcCC--Cc
Confidence 46666654 445566777899999999999988877643 4567889999999999999999999999987 77
Q ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHH
Q 002549 567 SKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPS-EDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDI 645 (909)
Q Consensus 567 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 645 (909)
-..+|..|...|...+.+++|+..|.+... ..|+ ...+..+...|-..|..|-|+..|+++++ ++|.-+.+++.+
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~Nl 326 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNL 326 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHH
Confidence 888999999999999999999999988765 4665 45677788888999999999999999998 899999999999
Q ss_pred HHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCch
Q 002549 646 IDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRL 725 (909)
Q Consensus 646 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 725 (909)
++++-..|+..+|...|.+++.. .+......+.|+..|..+|+++.|..+|.++++..|. -....+.|...|-++|++
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccH
Confidence 99999999999999999999987 5667889999999999999999999999999997665 456789999999999999
Q ss_pred hhHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHhccCchHHHHHHHH
Q 002549 726 NELYVVIQELQDMDFKIS-KSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPT-MYLYRVMSGLFCKGKRVRDVEAMVS 803 (909)
Q Consensus 726 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 803 (909)
++|+..+++.... +|. ...++.+...|...|+.+.|.+.+.+.+. +.|+ .+..+.|...|-..|+..+|++-++
T Consensus 405 ~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 405 DDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 9999999998864 455 46788899999999999999999999998 4575 4688999999999999999999999
Q ss_pred HHHHCCCCCCH-HhHHHHHHHh
Q 002549 804 EMKEAGFKPDL-SIWNSMLKLY 824 (909)
Q Consensus 804 ~~~~~~~~p~~-~~~~~l~~~~ 824 (909)
+.++ ++||. ..+-.++.++
T Consensus 481 ~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 481 TALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHc--cCCCCchhhhHHHHHH
Confidence 9998 78987 4555555543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-20 Score=211.39 Aligned_cols=396 Identities=12% Similarity=0.021 Sum_probs=277.0
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 002549 468 ISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQK 547 (909)
Q Consensus 468 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 547 (909)
....+...|++++|+..|++++.. .|++..+..+..+|...|++++|+..++.+++..|. ....+..+...|...|+
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCC
Confidence 346778889999999999998764 567778888889999999999999999999988765 35567778888999999
Q ss_pred HHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHH---------------------
Q 002549 548 LDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLY--------------------- 606 (909)
Q Consensus 548 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--------------------- 606 (909)
+++|+..|..+...+ +.+......++..+........+...++.-.. ..|.....
T Consensus 210 ~~eA~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 210 YADALLDLTASCIID--GFRNEQSAQAVERLLKKFAESKAKEILETKPE--NLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HHHHHHHHHHHHHhC--CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999887776543 11211112222211111111111111111000 00000000
Q ss_pred ---------HHHHHH---HhhcCChhhHHHHHHHHHHcC-CCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC
Q 002549 607 ---------RSMVVA---YCKMDFPETAHFIADQAEKKG-IPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD 673 (909)
Q Consensus 607 ---------~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 673 (909)
..+... ....+.+++|...++.++..+ ..|....++..++..+...|++++|+..++++++. .|.+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-~P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-DPRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCc
Confidence 000000 112356788888888888753 45667778888888888888888888888888876 4555
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 002549 674 RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDA 753 (909)
Q Consensus 674 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 753 (909)
...|..++.++...|++++|...|+++++..|. +...|..++..+...|++++|+..|++..+.. +.+...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 677888888888888888888888888887665 66778888888888888888888888888765 2334556667788
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-Hh-------HHHHHHHhh
Q 002549 754 FARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SI-------WNSMLKLYT 825 (909)
Q Consensus 754 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~-------~~~l~~~~~ 825 (909)
+.+.|++++|+..|++.++.. +.+...++.++..+...|++++|++.|+++++ +.|+. .+ ++..+..+.
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHH
Confidence 888888888888888887642 23467788888888888888888888888876 33432 11 111222233
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 002549 826 GIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKL 878 (909)
Q Consensus 826 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 878 (909)
..|++++|+++++++++ +.|+. .++..++.++.+.|++++|+++|++..+.
T Consensus 520 ~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 520 WKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45888888888888888 67865 56778888888888888888888888753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-19 Score=199.48 Aligned_cols=434 Identities=11% Similarity=0.015 Sum_probs=268.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 002549 362 RTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTP-DQALYEIMIGV 440 (909)
Q Consensus 362 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~ 440 (909)
..+......+.+.|++++|...|++..+. .|+...|..+..+|.+.|++++|+..++..++. .| +...+..+..+
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a 203 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Confidence 34556777888999999999999998874 577888888999999999999999999998875 44 45678888889
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 002549 441 LGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELI 520 (909)
Q Consensus 441 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~ 520 (909)
|...|++++|...+..+....+.........+.+. ....+.......++.... +...+..+.. +......
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~------- 273 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNEQSAQAVERL-LKKFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRP------- 273 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHH-HHHHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccC-------
Confidence 99999999998887766554443333222111110 011122222222211110 0001111111 1000000
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHH---HhcccHHHHHHHHHHHHhC
Q 002549 521 EFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSC---EYNERFAEASQVFSDMRFY 597 (909)
Q Consensus 521 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~ 597 (909)
..+..-+....+.. +.....+..+.... ...+++++|+..|+...+.
T Consensus 274 ----------------------------~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~ 323 (615)
T TIGR00990 274 ----------------------------KPRPAGLEDSNELD--EETGNGQLQLGLKSPESKADESYEEAARAFEKALDL 323 (615)
T ss_pred ----------------------------Ccchhhhhcccccc--cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhc
Confidence 00000011000000 00011111111111 1235666666666666654
Q ss_pred C-CCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChH
Q 002549 598 N-IEP-SEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRK 675 (909)
Q Consensus 598 ~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 675 (909)
+ ..| ....+..+...+...|++++|+..+++++. +.|+....+..++.++...|++++|+..|+++++. .|.++.
T Consensus 324 ~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~ 400 (615)
T TIGR00990 324 GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE--LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-NSEDPD 400 (615)
T ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH
Confidence 3 123 233455555566667777777777777766 56666777777777777777777777777777665 455677
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 002549 676 VWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFA 755 (909)
Q Consensus 676 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 755 (909)
+|..++.++...|++++|...|+++++..|. +...+..++.++.+.|++++|+..+++..+.. +.+...+..+..++.
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 7777777777777777777777777776655 55666677777777777777777777776543 334556666777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCC--c---hH-HHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccC
Q 002549 756 RSGNIFEVKKIYHGMKAAGYF--P---TM-YLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIE 828 (909)
Q Consensus 756 ~~g~~~~a~~~~~~~~~~~~~--p---~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 828 (909)
..|++++|++.|++....... + +. ..++.....+...|++++|+++++++++ ..|+. ..+..++.++...|
T Consensus 479 ~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQG 556 (615)
T ss_pred HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcc
Confidence 888888888888887763211 1 11 1122223334456899999999999887 34655 57888899999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC
Q 002549 829 DFKKTIQVYQEIQEADLQPD 848 (909)
Q Consensus 829 ~~~~A~~~~~~~~~~~~~p~ 848 (909)
++++|++.|+++++ +.+.
T Consensus 557 ~~~eAi~~~e~A~~--l~~~ 574 (615)
T TIGR00990 557 DVDEALKLFERAAE--LART 574 (615)
T ss_pred CHHHHHHHHHHHHH--Hhcc
Confidence 99999999999988 5554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-17 Score=169.90 Aligned_cols=668 Identities=13% Similarity=0.087 Sum_probs=387.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002549 190 NTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFARE 269 (909)
Q Consensus 190 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 269 (909)
-...+.....|++++|.+++.++++.. +.+...|.+|...|-..|+.+++...+-..-..+.. |...|..+.....+.
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhc
Confidence 333444445599999999999999886 677889999999999999999999888666555433 678899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH----HHHHHHHhcCCHHHH
Q 002549 270 GNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYT----VLIDSLGKANKISEA 345 (909)
Q Consensus 270 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A 345 (909)
|+++.|.-.+.+.++.. +++...+---+..|-+.|+...|.+.|.++.....+.|..-.. ..+..+...++-+.|
T Consensus 221 ~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred ccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999886 4565555566778999999999999999999875322322222 234556667777889
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH--
Q 002549 346 ANVMSEMLDA-SVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEM-- 422 (909)
Q Consensus 346 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-- 422 (909)
.+.++..... +-..+...++.++..+.+...++.|......+......+|..-+.+- ..++. -+.-.
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~~-----~~~~~~~ 369 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRRE-----EPNALCE 369 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhccc-----ccccccc
Confidence 9888888762 22345567778888888888888888888777764444544333210 00000 00000
Q ss_pred HHCCCCCCHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHH
Q 002549 423 VSNGFTPDQALYEIMIGVL-GRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLL 501 (909)
Q Consensus 423 ~~~~~~~~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~ 501 (909)
...++.++...+..++... .+.+...+++..+ ..+ .... +.-+...+.
T Consensus 370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~--l~~-~n~~----------------------------~~d~~dL~~ 418 (895)
T KOG2076|consen 370 VGKELSYDLRVIRLMICLVHLKERELLEALLHF--LVE-DNVW----------------------------VSDDVDLYL 418 (895)
T ss_pred CCCCCCccchhHhHhhhhhcccccchHHHHHHH--HHH-hcCC----------------------------hhhhHHHHH
Confidence 0112344444422222111 1222222222111 111 1100 111223344
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhc
Q 002549 502 SILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYN 581 (909)
Q Consensus 502 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 581 (909)
.+..++.+.|++.+|..++..+..........+|..++.+|...|.++.|++.|..++... |.+....-+|...+.+.
T Consensus 419 d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~ 496 (895)
T KOG2076|consen 419 DLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQL 496 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhc
Confidence 4555555555555555555555555555455555555555555555555555555555544 44555555555555555
Q ss_pred ccHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc---------------------
Q 002549 582 ERFAEASQVFSDMRF--------YNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKK--------------------- 632 (909)
Q Consensus 582 g~~~~A~~~~~~m~~--------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------- 632 (909)
|+.++|++.+..+.. .+..|+..........+.+.|+.++=+.+...++..
T Consensus 497 g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~ 576 (895)
T KOG2076|consen 497 GNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAG 576 (895)
T ss_pred CCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcc
Confidence 555555555555331 112333333334444445555544322222222110
Q ss_pred CCCCCCchHHHHHHHHhhhcCChHHHHHHHHHH------HhcCCCCCh--HhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002549 633 GIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCL------RQRCAPVDR--KVWNALIKAYAASGCYERARAVFNTMMRDG 704 (909)
Q Consensus 633 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 704 (909)
+-.+-.......++.+-.+.+++.....-...- ...+...+. ..+.-++.++.+.+.+++|..+...++...
T Consensus 577 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~ 656 (895)
T KOG2076|consen 577 TTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAY 656 (895)
T ss_pred ccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 001122233333444444444333222222111 111111111 234456778888899999999998887753
Q ss_pred CCC-Ccc---cH-HHHHHHHHhcCchhhHHHHHHHHHhC-CC--CccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002549 705 PSP-TVD---SI-NGLLQALIVDGRLNELYVVIQELQDM-DF--KISK-SSILLMLDAFARSGNIFEVKKIYHGMKAAGY 775 (909)
Q Consensus 705 ~~~-~~~---~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 775 (909)
..- +.. .+ ...+.+....+++.+|...+..|... +. .|.. ..|+...+...+.|+----.+++..+.....
T Consensus 657 ~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~ 736 (895)
T KOG2076|consen 657 IFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNK 736 (895)
T ss_pred hhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 221 111 22 23345566888999999988888755 11 2222 2333344444444433322333333332211
Q ss_pred CchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHH-hh----------ccCCHHHHHHHHHHHHHcC
Q 002549 776 FPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKL-YT----------GIEDFKKTIQVYQEIQEAD 844 (909)
Q Consensus 776 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~----------~~g~~~~A~~~~~~~~~~~ 844 (909)
.-++..+...+..+..++.+..|+..+-.+.. ..||....+.+++. +. ++-..-+++.+.++-.+
T Consensus 737 ~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~-- 812 (895)
T KOG2076|consen 737 DDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKE-- 812 (895)
T ss_pred cCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--
Confidence 11233333334556678889999998877776 46886655554432 21 11235667777777766
Q ss_pred CCC--C-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh-------------hHHHHHHHHhccCCHHHHHHhhc
Q 002549 845 LQP--D-EDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLD-------------TYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 845 ~~p--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------------~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
+.- + -.++.+++.+|-..|-..-|..+|++... ..|-++ .-..|.-+|..+|+.+.|..+++
T Consensus 813 lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~--~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 813 LRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE--VSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred hhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC--CCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 333 2 38899999999999999999999999994 432211 23356667999999999999986
Q ss_pred C
Q 002549 909 S 909 (909)
Q Consensus 909 ~ 909 (909)
+
T Consensus 891 k 891 (895)
T KOG2076|consen 891 K 891 (895)
T ss_pred h
Confidence 4
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-20 Score=201.62 Aligned_cols=304 Identities=13% Similarity=0.102 Sum_probs=190.1
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChh
Q 002549 541 MLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPE 620 (909)
Q Consensus 541 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 620 (909)
.+...|++++|+..|+++.+.+ |.+..++..+...+...|++++|..+++.+...+..++..
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---------------- 105 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ---------------- 105 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH----------------
Confidence 3445666777777777776654 5566667777777777777777777777665432111110
Q ss_pred hHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 002549 621 TAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTM 700 (909)
Q Consensus 621 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 700 (909)
...++..++..|...|++++|..+|+++.+. .+.+..+++.++.++...|++++|.+.++++
T Consensus 106 -----------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 106 -----------------RLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred -----------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 0123344555555555555565555555543 3344556666666666666666666666666
Q ss_pred HHcCCCCCc----ccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002549 701 MRDGPSPTV----DSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYF 776 (909)
Q Consensus 701 ~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 776 (909)
.+.++.+.. ..+..++..+.+.|++++|...++++.+.. +.+...+..++..+.+.|++++|.++++++.+.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 665443221 123445555666666666666666666543 222344555666777777777777777777664322
Q ss_pred chHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 002549 777 PTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLI 856 (909)
Q Consensus 777 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 856 (909)
....+++.++.+|.+.|++++|.+.++++.+ ..|+...+..++..+.+.|++++|+.+++++++ ..|+..++..+.
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~ 322 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALE--EYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLL 322 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHH
Confidence 2245567777777778888888888877776 356666667777777778888888888888777 677777777666
Q ss_pred HHHHh---cCChhhHHHHHHHHHHcCCCCChh
Q 002549 857 IMYCR---DCRPEEGLSLMHEMRKLGLEPKLD 885 (909)
Q Consensus 857 ~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 885 (909)
..+.. .|+.++|+.++++|.+.++.|+++
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 65553 457778888888887766666665
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-20 Score=199.02 Aligned_cols=285 Identities=14% Similarity=0.166 Sum_probs=231.6
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC---hHhHHHHHHHHHHcCCH
Q 002549 614 CKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD---RKVWNALIKAYAASGCY 690 (909)
Q Consensus 614 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 690 (909)
...|++++|...+.++++ ..|++..++..++..+...|++++|..+++.+...+..++ ...+..++..|...|++
T Consensus 46 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLK--VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HhcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555556666665555 4566677777788888888888888888888776422111 35678899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccH----HHHHHHHHHHHhcCCHHHHHHH
Q 002549 691 ERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISK----SSILLMLDAFARSGNIFEVKKI 766 (909)
Q Consensus 691 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~ 766 (909)
++|..+|+++.+..+. +..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEGDF-AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999987554 6778999999999999999999999999887644332 2345677888999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH--HhHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 002549 767 YHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL--SIWNSMLKLYTGIEDFKKTIQVYQEIQEAD 844 (909)
Q Consensus 767 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 844 (909)
|+++.+.. +.+...+..++..|.+.|++++|+++++++.+. .|+. .++..++.+|...|+.++|.+.++++.+
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-- 277 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE-- 277 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 99998753 234567888999999999999999999999874 4543 5678899999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhc---cCCHHHHHHhhc
Q 002549 845 LQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGK---QQQLEQAEELLK 908 (909)
Q Consensus 845 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~ 908 (909)
..|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++|..+++
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 7898877789999999999999999999999854 7898888888887764 568888887765
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-19 Score=200.26 Aligned_cols=363 Identities=10% Similarity=0.016 Sum_probs=218.9
Q ss_pred HHHhcccHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 002549 471 ILVKGECYDHAAEILRSAIRNG--IELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKL 548 (909)
Q Consensus 471 ~~~~~~~~~~a~~~~~~~~~~~--~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 548 (909)
.+.++.+|+.-.-.+....+.. -.-+...+..++..+.+.|+.++|..++..++...+..... ...++......|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~-l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDL-LRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhH-HHHHhhhHhhcCCH
Confidence 4455666655444443332211 11122235555666677777777777777777766665333 33344555557777
Q ss_pred HHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHH
Q 002549 549 DAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEP-SEDLYRSMVVAYCKMDFPETAHFIAD 627 (909)
Q Consensus 549 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 627 (909)
++|++.|+++.... |.+...+..+...+...|++++|+..+++.... .| +...+..+...+...|++++|...++
T Consensus 93 ~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 93 DAVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 77777777777665 666667777777777777777777777776653 33 34455566666677777777777766
Q ss_pred HHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 002549 628 QAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSP 707 (909)
Q Consensus 628 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 707 (909)
.+.. ..|++...+..++ .+...|++++|...++.+++....++...+..++.++...|++++|...++++++..|.
T Consensus 169 ~~~~--~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~- 244 (656)
T PRK15174 169 TQAQ--EVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD- 244 (656)
T ss_pred HHHH--hCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-
Confidence 6655 4455555554433 35666777777777776665422233333444456666677777777777777766554
Q ss_pred CcccHHHHHHHHHhcCchhh----HHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHH
Q 002549 708 TVDSINGLLQALIVDGRLNE----LYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYR 783 (909)
Q Consensus 708 ~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 783 (909)
+...+..+...+...|++++ |...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~ 322 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRA 322 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 45556666666777777664 566666666554 2234555666666777777777777777766532 12344555
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHCCCCCCHHh-HHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC
Q 002549 784 VMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSI-WNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD 848 (909)
Q Consensus 784 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 848 (909)
.++..|.+.|++++|++.++++.+ ..|+... +..++.++...|+.++|+..|+++++ ..|+
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~--~~P~ 384 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ--ARAS 384 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hChh
Confidence 666666677777777777776665 2454433 33345556666777777777777766 5554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-15 Score=152.18 Aligned_cols=611 Identities=12% Similarity=0.060 Sum_probs=434.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002549 200 SNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEIS 279 (909)
Q Consensus 200 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 279 (909)
+|...|..++....+.+ +.++..|-.-.+.--..|++..|..+..+=-+. ++-+...|...+ +....+.|..+.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHH
Confidence 57788888998888877 556777777777777778888887776544333 233444554333 556677787777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002549 280 ENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDV-VTYTVLIDSLGKANKISEAANVMSEMLDASVK 358 (909)
Q Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 358 (909)
....+.. +.++..|.--++. ..+...=..++++.++. .|+. ..|... ......+.|.-++.+..+. ++
T Consensus 339 A~Avr~~-P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~--iP~sv~LWKaA----VelE~~~darilL~rAvec-cp 407 (913)
T KOG0495|consen 339 ANAVRFL-PTSVRLWLKAADL---ESDTKNKKRVLRKALEH--IPRSVRLWKAA----VELEEPEDARILLERAVEC-CP 407 (913)
T ss_pred HHHHHhC-CCChhhhhhHHhh---hhHHHHHHHHHHHHHHh--CCchHHHHHHH----HhccChHHHHHHHHHHHHh-cc
Confidence 7777653 4445444433332 22334445666666665 3444 345433 3455666688888887764 22
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH----CCCCCCHHHH
Q 002549 359 PTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVS----NGFTPDQALY 434 (909)
Q Consensus 359 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~ 434 (909)
.+.. |.-++.+..-++.|.+++.+..+. ++.+...|.+-...--.+|..+...+++.+-+. .|+..+...|
T Consensus 408 ~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 408 QSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred chHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 2333 334556667788888888888775 556777777777777778888877777665443 4666666666
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCC
Q 002549 435 EIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELD--HEKLLSILSSYNVSGR 512 (909)
Q Consensus 435 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d--~~~~~~l~~~~~~~~~ 512 (909)
..=...+-+.|..-.+. .+....+..|++.. ..||..-.+.|.+.+.
T Consensus 483 l~eAe~~e~agsv~TcQ-------------------------------AIi~avigigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQ-------------------------------AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred HHHHHHHhhcCChhhHH-------------------------------HHHHHHHhhccccchhHhHHhhhHHHHHhcch
Confidence 55444554444444433 34444444554432 3467777888888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHH
Q 002549 513 HLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFS 592 (909)
Q Consensus 513 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 592 (909)
.+-|+.++..+++-.|. ...++...+..--..|..++-..+++++...- |.....|......+...|+...|..++.
T Consensus 532 ~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~~--pkae~lwlM~ake~w~agdv~~ar~il~ 608 (913)
T KOG0495|consen 532 IECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--PKAEILWLMYAKEKWKAGDVPAARVILD 608 (913)
T ss_pred HHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHhcCCcHHHHHHHH
Confidence 88888888888876654 45566666666667888888888888888753 7788888888888888899999998888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCC
Q 002549 593 DMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPV 672 (909)
Q Consensus 593 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 672 (909)
...+.... +...+...+........++.|+.++.++.. ......+|.--+....-+++.++|+.++++.++. +|.
T Consensus 609 ~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~ 683 (913)
T KOG0495|consen 609 QAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPD 683 (913)
T ss_pred HHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCc
Confidence 88765432 566777888888888889999999888765 2235667777777788888899999999888887 777
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 002549 673 DRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLD 752 (909)
Q Consensus 673 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 752 (909)
-...|-.++..+-+.++++.|.+.|..-.+.-|. .+..|-.|...--+.|.+..|..++++..-.+ +.+...|...+.
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~-~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir 761 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN-SIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIR 761 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC-CchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHH
Confidence 7888888889998999999999998888876555 66778888777778888888999998887766 344556666788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHH
Q 002549 753 AFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKK 832 (909)
Q Consensus 753 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 832 (909)
+-.+.|+.+.|..+..+.++.- +.+-..|.--|....+.++-..+...+.+ +.-|......+...+-...++++
T Consensus 762 ~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHH
Confidence 8888999999988888887632 33556777777777777775555544433 55677777777777778889999
Q ss_pred HHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 002549 833 TIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK 883 (909)
Q Consensus 833 A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 883 (909)
|++-|+++++ +.||. .+|..+-..+.+.|.-++-.+++.+.. ...|.
T Consensus 836 ar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~--~~EP~ 883 (913)
T KOG0495|consen 836 AREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE--TAEPT 883 (913)
T ss_pred HHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh--ccCCC
Confidence 9999999998 88887 677788888888998888888888877 33454
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-18 Score=195.30 Aligned_cols=377 Identities=11% Similarity=0.031 Sum_probs=291.1
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCChH------HHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 002549 441 LGRENKGEEIRKVVRDMKELSGINMQ------EISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHL 514 (909)
Q Consensus 441 ~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~ 514 (909)
+.+..+++..--++....+......+ .......+.|++++|..+++..+.....+ ...+..++.++...|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHH
Confidence 45666676655555444332222221 13345668899999999999998765444 444555567777899999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHH
Q 002549 515 EACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDM 594 (909)
Q Consensus 515 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 594 (909)
.|...++.+....|.. ...+..+...+...|++++|++.|+++.... |.+...+..++..+...|++++|...++.+
T Consensus 94 ~A~~~l~~~l~~~P~~-~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQ-PEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 9999999999987764 5567778888999999999999999998875 788899999999999999999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCCh
Q 002549 595 RFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDR 674 (909)
Q Consensus 595 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 674 (909)
......+ ...+.. +..+...|++++|...++.++... +++.......++.++...|++++|+..++++++. .|.+.
T Consensus 171 ~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~-~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-~p~~~ 246 (656)
T PRK15174 171 AQEVPPR-GDMIAT-CLSFLNKSRLPEDHDLARALLPFF-ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-GLDGA 246 (656)
T ss_pred HHhCCCC-HHHHHH-HHHHHHcCCHHHHHHHHHHHHhcC-CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCH
Confidence 6643322 223323 334778899999999999887642 2233444556678889999999999999999887 56678
Q ss_pred HhHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHH
Q 002549 675 KVWNALIKAYAASGCYER----ARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLM 750 (909)
Q Consensus 675 ~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 750 (909)
..+..++.+|...|++++ |...|+++++..|. +...+..++..+...|++++|+..+++..+.. +.+......+
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~L 324 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 888999999999999985 89999999998776 77788999999999999999999999998865 3345566678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCC
Q 002549 751 LDAFARSGNIFEVKKIYHGMKAAGYFPTM-YLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIED 829 (909)
Q Consensus 751 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 829 (909)
..++.+.|++++|...++.+.... |+. ..+..++..+...|++++|++.|+++.+ ..|+.. ..+
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~--~~P~~~-----------~~~ 389 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ--ARASHL-----------PQS 389 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hChhhc-----------hhh
Confidence 889999999999999999998753 443 3344457788899999999999999987 456653 345
Q ss_pred HHHHHHHHHHHHH
Q 002549 830 FKKTIQVYQEIQE 842 (909)
Q Consensus 830 ~~~A~~~~~~~~~ 842 (909)
+++|...|.+.++
T Consensus 390 ~~ea~~~~~~~~~ 402 (656)
T PRK15174 390 FEEGLLALDGQIS 402 (656)
T ss_pred HHHHHHHHHHHHH
Confidence 6677777777776
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-18 Score=200.85 Aligned_cols=424 Identities=11% Similarity=0.048 Sum_probs=304.6
Q ss_pred HHHHHHHHhcCCChHH---HHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 002549 452 KVVRDMKELSGINMQE---ISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHAS 528 (909)
Q Consensus 452 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 528 (909)
..++. ....+..+.. ...+....|+.++|+.++...... -+.+...+..+..++...|++++|...++.+++..|
T Consensus 3 ~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 3 SWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred hhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444 4445556654 446778889999999999888752 244555688888899999999999999999988876
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC-CHHHHH
Q 002549 529 ESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEP-SEDLYR 607 (909)
Q Consensus 529 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~ 607 (909)
.. ......++..+...|++++|+..++++.... |.+.. +..+..++...|+.++|+..++++.+. .| +...+.
T Consensus 81 ~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~ 154 (765)
T PRK10049 81 QN-DDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPT 154 (765)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 64 4556678888889999999999999998875 77777 888889999999999999999998874 34 445556
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCC-----chHHHHHHHHhh-----hcCCh---HHHHHHHHHHHhc-CCCCC
Q 002549 608 SMVVAYCKMDFPETAHFIADQAEKKGIPFED-----LSIYVDIIDAYG-----RLKLW---QKAESLVGCLRQR-CAPVD 673 (909)
Q Consensus 608 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~-~~~~~ 673 (909)
.+...+...+..+.|+..++.+.. .|+. ......++.... ..+++ ++|++.++.+++. ...|+
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 667777788889989888876543 2221 011222222222 22334 7788888888754 11222
Q ss_pred h-HhHH-HH---HHHHHHcCCHHHHHHHHHHHHHcCCC-CCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCc---cH
Q 002549 674 R-KVWN-AL---IKAYAASGCYERARAVFNTMMRDGPS-PTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKI---SK 744 (909)
Q Consensus 674 ~-~~~~-~l---~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~ 744 (909)
. ..+. .. +..+...|++++|+..|+++++.++. |+. ....+..+|...|++++|+.+|+++.+..... ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 2 1122 21 23456778999999999999887543 332 22235678889999999999999987654221 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------Cch---HHHHHHHHHHHhccCchHHHHHHHHHHHHCCC
Q 002549 745 SSILLMLDAFARSGNIFEVKKIYHGMKAAGY-----------FPT---MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGF 810 (909)
Q Consensus 745 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 810 (909)
.....+..++...|++++|...++.+.+... .|+ ...+..++..+...|++++|++.++++...
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-- 388 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-- 388 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 3455566678889999999999999887531 122 234556777888999999999999999873
Q ss_pred CCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHH
Q 002549 811 KPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYK 888 (909)
Q Consensus 811 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 888 (909)
.|+ ...+..++..+...|+.++|++.++++++ +.|+. ..+..++..+...|++++|..+++++.+ ..|+.....
T Consensus 389 ~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~ 464 (765)
T PRK10049 389 APGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQ 464 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 454 46788888888899999999999999999 88975 6677888888999999999999999985 466655444
Q ss_pred HHHHH
Q 002549 889 SLISA 893 (909)
Q Consensus 889 ~l~~~ 893 (909)
.+-+.
T Consensus 465 ~~~~~ 469 (765)
T PRK10049 465 RLARA 469 (765)
T ss_pred HHHHH
Confidence 44433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-18 Score=197.38 Aligned_cols=419 Identities=10% Similarity=0.037 Sum_probs=317.6
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChH---HHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002549 428 TPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQ---EISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSIL 504 (909)
Q Consensus 428 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~ 504 (909)
..++.-..-.+.+....|+.++|++++.+.....+.... .++..+...+++++|...+++++... +.+......++
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 445566667778888999999999999999876666663 35567889999999999999988763 33455677888
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccH
Q 002549 505 SSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERF 584 (909)
Q Consensus 505 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 584 (909)
.++...|+.++|...++.+.+..|.... +..+...+...|+.++|+..++++.+.. |.+...+..+..++...|..
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~--~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPDKAN--LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCh
Confidence 8899999999999999999998776544 7788889999999999999999999876 88888888899999889999
Q ss_pred HHHHHHHHHHHhCCCCCCHH------HHHHHHHHHh-----hcCCh---hhHHHHHHHHHHc-CCCCCCchHHHHH----
Q 002549 585 AEASQVFSDMRFYNIEPSED------LYRSMVVAYC-----KMDFP---ETAHFIADQAEKK-GIPFEDLSIYVDI---- 645 (909)
Q Consensus 585 ~~A~~~~~~m~~~~~~p~~~------~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~~~~~~l---- 645 (909)
++|+..++.... .|+.. .....+.... ..+++ ++|+..++.+++. ...|+....+...
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 999999987653 33320 1111122211 12233 6788888888863 3444443322221
Q ss_pred HHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CcccHHHHHHHHHhc
Q 002549 646 IDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSP---TVDSINGLLQALIVD 722 (909)
Q Consensus 646 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 722 (909)
...+...|++++|+..|+++++.+.+........++..|...|++++|...|+++++..+.. .......+..++.+.
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 23456779999999999999887432111122235778999999999999999998765442 123456677788999
Q ss_pred CchhhHHHHHHHHHhCCC-----------CccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 002549 723 GRLNELYVVIQELQDMDF-----------KISK---SSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGL 788 (909)
Q Consensus 723 g~~~~A~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 788 (909)
|++++|.++++++.+... .|+. ..+..+...+...|++++|+++++++.... +.+...+..++..
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 999999999999987642 1232 245567788899999999999999998753 3367888999999
Q ss_pred HhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 002549 789 FCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMY 859 (909)
Q Consensus 789 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 859 (909)
+...|++++|++.++++++ ..||. ..+..++..+...|++++|+..++++++ ..|+......+-..+
T Consensus 403 ~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 403 LQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999999999999998 56775 5666677788888999999999999999 899887655554444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-14 Score=146.01 Aligned_cols=538 Identities=13% Similarity=0.091 Sum_probs=307.3
Q ss_pred CChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHH
Q 002549 94 NQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDL 173 (909)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~ 173 (909)
+....|+.++....+.+|.++..|.+-.+.--..|++..|..+...-.+. ++-+...|.--++. . .++.|..+
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiRL---h---p~d~aK~v 337 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIRL---H---PPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHhc---C---ChHHHHHH
Confidence 35667888888887777888888887777777777777776665443332 22333333222211 1 12233333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 002549 174 LNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFF 253 (909)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 253 (909)
.....+. -|..+. .-+.+---..+...=.+++++.++.- +.++..|-..+ ...+.+.|.-++.+..+. ++
T Consensus 338 vA~Avr~--~P~Sv~--lW~kA~dLE~~~~~K~RVlRKALe~i-P~sv~LWKaAV----elE~~~darilL~rAvec-cp 407 (913)
T KOG0495|consen 338 VANAVRF--LPTSVR--LWLKAADLESDTKNKKRVLRKALEHI-PRSVRLWKAAV----ELEEPEDARILLERAVEC-CP 407 (913)
T ss_pred HHHHHHh--CCCChh--hhhhHHhhhhHHHHHHHHHHHHHHhC-CchHHHHHHHH----hccChHHHHHHHHHHHHh-cc
Confidence 3333322 122111 01111111122333344455554442 33344443332 233444455555555443 11
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002549 254 PDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLI 333 (909)
Q Consensus 254 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 333 (909)
.+. -|.-+|++...|+.|.+++....+. ++.+..+|.+-...--..|+.+....+..+-..
T Consensus 408 ~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~-------------- 468 (913)
T KOG0495|consen 408 QSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLS-------------- 468 (913)
T ss_pred chH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH--------------
Confidence 111 1223344455555555555555442 344555555444444445554444444332111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCC
Q 002549 334 DSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRP--DHLAYSVMLDIFLRFNE 411 (909)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 411 (909)
++...|+..+...|..=...|-..|..-.+..+.......|+.- ...||..-...|.+.+.
T Consensus 469 -----------------~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 469 -----------------ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred -----------------HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch
Confidence 11223444444444444444444444444444444444444322 24566666677777777
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHc
Q 002549 412 TNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRN 491 (909)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 491 (909)
++-|..+|...+.- ++.+...|......--..|..++...++++.....
T Consensus 532 ~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~------------------------------ 580 (913)
T KOG0495|consen 532 IECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC------------------------------ 580 (913)
T ss_pred HHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------------------------------
Confidence 77777777777653 12244555555555555666666666666655422
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhH
Q 002549 492 GIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMY 571 (909)
Q Consensus 492 ~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 571 (909)
+.....|......+...|++..|..++..+.+..+. +..++.+-+........++.|..+|.++... .++...|
T Consensus 581 --pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~---sgTeRv~ 654 (913)
T KOG0495|consen 581 --PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI---SGTERVW 654 (913)
T ss_pred --CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc---CCcchhh
Confidence 222333444455666678888888888888777666 5667777777777788888888888777764 3567777
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 002549 572 ESLIHSCEYNERFAEASQVFSDMRFYNIEPSE-DLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYG 650 (909)
Q Consensus 572 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 650 (909)
.--+......+..++|+.++++.++. .|+- ..|..+.+.+-+.++.+.|...|..-.+ ..|..+..|..++..-.
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEE 730 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHH
Confidence 77666666777888888888776653 4553 3466666677777777777777766555 56777788888888888
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhh
Q 002549 651 RLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNE 727 (909)
Q Consensus 651 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 727 (909)
+.|....|..++++..-. .|.+...|-..|++=.+.|+.+.|..+..++++.-|. +-..|.--|....+.++-..
T Consensus 731 k~~~~~rAR~ildrarlk-NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLK-NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HhcchhhHHHHHHHHHhc-CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhHHHHHHhccCcccchH
Confidence 888888888888877655 4667778888888888888888888888888776555 55555555554444444333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-17 Score=184.88 Aligned_cols=394 Identities=11% Similarity=0.082 Sum_probs=199.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhc
Q 002549 502 SILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYN 581 (909)
Q Consensus 502 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 581 (909)
.++..+...|+.++|...++...... +........++..|...|++++|+++|+++.+.. |.++..+..++..+...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhc
Confidence 33444444455555555555444110 1111112222334445555555555555555544 44455555555555555
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHH
Q 002549 582 ERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESL 661 (909)
Q Consensus 582 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 661 (909)
++.++|++.++++... .|+...+..++..+...++..+|+..++++++ ..|++...+..+..++.+.|-...|.++
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~--~~P~n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR--LAPTSEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 5555555555555432 23333332222233233444345555555555 4455555555555555555555555555
Q ss_pred HHHHHhcCCCCChHhH--HHHHHHHHHc---------C---CHHHHHHHHHHHHHcCC-CCCccc-H----HHHHHHHHh
Q 002549 662 VGCLRQRCAPVDRKVW--NALIKAYAAS---------G---CYERARAVFNTMMRDGP-SPTVDS-I----NGLLQALIV 721 (909)
Q Consensus 662 ~~~~~~~~~~~~~~~~--~~l~~~~~~~---------g---~~~~A~~~~~~~~~~~~-~~~~~~-~----~~l~~~~~~ 721 (909)
.++-... +.+....+ ...+.-.++. + -.+.|+.-++.++..-+ .|...+ | .-.+-++..
T Consensus 226 ~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~ 304 (822)
T PRK14574 226 AKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV 304 (822)
T ss_pred HHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH
Confidence 5443222 11111000 0000001100 0 23445555555554211 122111 1 122344556
Q ss_pred cCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHhccCchH
Q 002549 722 DGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAG-----YFPTMYLYRVMSGLFCKGKRVR 796 (909)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~ 796 (909)
.|++.++++.++.+...+.+....+...+.++|...+.+++|..+|+.+.... ..++......|..+|...++++
T Consensus 305 r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~ 384 (822)
T PRK14574 305 RHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLD 384 (822)
T ss_pred hhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHH
Confidence 66777777777777766665556666667777777777777777777765421 1223333456666777777777
Q ss_pred HHHHHHHHHHHCCC-----------CCC--HH-hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHh
Q 002549 797 DVEAMVSEMKEAGF-----------KPD--LS-IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP-DEDSFNTLIIMYCR 861 (909)
Q Consensus 797 ~A~~~~~~~~~~~~-----------~p~--~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 861 (909)
+|..+++++.+..- .|| -. ....++..+...|++.+|++.+++++. ..| |......++.++..
T Consensus 385 ~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~ 462 (822)
T PRK14574 385 KAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLA 462 (822)
T ss_pred HHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 77777777665210 111 11 123344555666777777777777766 566 34666667777777
Q ss_pred cCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCCHHHHHHhh
Q 002549 862 DCRPEEGLSLMHEMRKLGLEPK-LDTYKSLISAFGKQQQLEQAEELL 907 (909)
Q Consensus 862 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 907 (909)
.|.+.+|++.++.+. .+.|+ .......+.++...|++++|..+.
T Consensus 463 Rg~p~~A~~~~k~a~--~l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 463 RDLPRKAEQELKAVE--SLAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred cCCHHHHHHHHHHHh--hhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 777777777775555 33444 445556666666777777776554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-14 Score=151.67 Aligned_cols=684 Identities=13% Similarity=0.088 Sum_probs=344.9
Q ss_pred CChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002549 128 GRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMK 207 (909)
Q Consensus 128 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 207 (909)
|++++|..++.+..+.. +.+...|-+|-..+-..|+. .++...+-... +--+.|..-|..+.....+.|+++.|.-
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~--eK~l~~~llAA-HL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDI--EKALNFWLLAA-HLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccH--HHHHHHHHHHH-hcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 55555555555554442 23344455555555444432 22222111111 1111133444444444445555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHH
Q 002549 208 VYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYN----SLLYAFAREGNVEKVKEISENML 283 (909)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----~ll~~~~~~g~~~~a~~~~~~~~ 283 (909)
+|.+.++.. +++....-.-...|-+.|+...|.+.|.++.......|..-+. .+++.+...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555443 2333333333344445555555555555554442211111111 12223333344444444444433
Q ss_pred HCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HCCCCCC
Q 002549 284 KMG-FGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEML--DASVKPT 360 (909)
Q Consensus 284 ~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 360 (909)
..+ -..+...++.++..|.+...++.|......+......+|...|.+-= .++ .-+.-.. ..+..++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----~~~-----~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----RRR-----EEPNALCEVGKELSYD 377 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----hcc-----ccccccccCCCCCCcc
Confidence 311 11223344444444444444444444444444332233333221000 000 0000000 0112223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002549 361 LRTYSALICGYAKAGNRLEAEKTFYCMRRSG--IRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMI 438 (909)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 438 (909)
...+. +.-+..+.+..+....+.....+.. +.-+...|..+..++...|++.+|..+|..+......-+...|..+.
T Consensus 378 l~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 33311 1223334444444555555555555 33456788889999999999999999999998874445677899999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCChHH---HHHHHHhcccHHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHH
Q 002549 439 GVLGRENKGEEIRKVVRDMKELSGINMQE---ISSILVKGECYDHAAEILRSAIR--------NGIELDHEKLLSILSSY 507 (909)
Q Consensus 439 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~--------~~~~~d~~~~~~l~~~~ 507 (909)
.+|...|..++|.+.++......|...+. ++.++.+.|+.++|.+.+..+.. .+..|+..........+
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 99999999999999999999988887775 56788889999999999888641 12233333333334444
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHH
Q 002549 508 NVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEA 587 (909)
Q Consensus 508 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 587 (909)
...|+.++-..+...++.... .. .|.- -+..++...- ... +..+........++.+..+.++....
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~~------~~----~~~f-~~~~k~r~~~--~~~-~~~~~~~~~~~~~~~~~~k~~~~~~~ 602 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDFL------KK----RYIF-PRNKKKRRRA--IAG-TTSKRYSELLKQIIRAREKATDDNVM 602 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHH------HH----HHhc-chHHHHHHHh--hcc-ccccccchhHHHHHHHHhccCchHHh
Confidence 445554443333322222100 00 0000 0000000000 000 00011111111122222211111100
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCc-hHHHHHHHHhhhcCChHHHHHHHHHHH
Q 002549 588 SQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDL-SIYVDIIDAYGRLKLWQKAESLVGCLR 666 (909)
Q Consensus 588 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~ 666 (909)
..-. ... ..+.-....++.-++. ..+..++.++.+.+++++|..+...+.
T Consensus 603 ~~~l----------------------------~d~-~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~ 653 (895)
T KOG2076|consen 603 EKAL----------------------------SDG-TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTAL 653 (895)
T ss_pred hhcc----------------------------cch-hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 0000 000 0000111123333333 556667778888899999998888776
Q ss_pred hcC-CCCChH----hHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCcccHHHHHHHHHhcCchhhHHHHHHHHH
Q 002549 667 QRC-APVDRK----VWNALIKAYAASGCYERARAVFNTMMRD-----GPSPTVDSINGLLQALIVDGRLNELYVVIQELQ 736 (909)
Q Consensus 667 ~~~-~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 736 (909)
... +-.++. .-...+.+.+..+++..|.+.++.++.. .+. ....|+...+.+.+.|+----...+..+.
T Consensus 654 ~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~-q~~l~n~~~s~~~~~~q~v~~~R~~~~~~ 732 (895)
T KOG2076|consen 654 EAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY-QLNLWNLDFSYFSKYGQRVCYLRLIMRLL 732 (895)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 531 112222 2334556677789999999999998876 222 23445555555555555444444444444
Q ss_pred hCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHh----------ccCchHHHHHHHHHH
Q 002549 737 DMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPT-MYLYRVMSGLFC----------KGKRVRDVEAMVSEM 805 (909)
Q Consensus 737 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~----------~~g~~~~A~~~~~~~ 805 (909)
......++.............+.+..|+..+-...... |+ +.+--+++-++. ++-..-++..++.+.
T Consensus 733 ~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~--pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY 810 (895)
T KOG2076|consen 733 VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN--PDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRY 810 (895)
T ss_pred ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33322223333333344566788888888887777643 43 222222222221 222234566666666
Q ss_pred HHCCCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC-------------hhhHHHHHHHHHhcCChhhHHHH
Q 002549 806 KEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-------------EDSFNTLIIMYCRDCRPEEGLSL 871 (909)
Q Consensus 806 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~ 871 (909)
.+..... ...++..++.+|...|=..-|..+|+++++ +.|- ..+-.+|.-.|-.+|+...|.++
T Consensus 811 ~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~--~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqi 888 (895)
T KOG2076|consen 811 KELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE--VSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQI 888 (895)
T ss_pred HHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC--CCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHH
Confidence 5532111 235778899999999999999999999999 5441 23456777889999999999999
Q ss_pred HHHH
Q 002549 872 MHEM 875 (909)
Q Consensus 872 ~~~~ 875 (909)
+++-
T Consensus 889 l~ky 892 (895)
T KOG2076|consen 889 LEKY 892 (895)
T ss_pred HHhh
Confidence 8763
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-16 Score=151.89 Aligned_cols=500 Identities=11% Similarity=0.048 Sum_probs=311.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHH
Q 002549 290 DEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYT-VLIDSLGKANKISEAANVMSEMLDASVKPTL----RTY 364 (909)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~ 364 (909)
.-.+...|..-|.......+|+..++-+.+....|+.-... .+...+.+...+.+|+++++..++.-...+. ...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 34445556667777788888999998888877777765433 3556778888899999999888765322222 233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHH--------HH
Q 002549 365 SALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALY--------EI 436 (909)
Q Consensus 365 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------~~ 436 (909)
+.+.-.+.+.|.++.|...|+...+. .|+..+-..|+-++...|+-++..+.|.+|+.-...||..-| ..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44444567888999999988887764 578776666666666778888888889888875434443221 01
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCCHHH
Q 002549 437 MIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEK-LLSILSSYNVSGRHLE 515 (909)
Q Consensus 437 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~-~~~l~~~~~~~~~~~~ 515 (909)
|+.--.+. ..++.|.+.... .-++++-.--.++..-+.||-.. +.-.+...-.+...+.
T Consensus 358 ll~eai~n-------d~lk~~ek~~ka-------------~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~l 417 (840)
T KOG2003|consen 358 LLNEAIKN-------DHLKNMEKENKA-------------DAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAEL 417 (840)
T ss_pred HHHHHHhh-------HHHHHHHHhhhh-------------hHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhh
Confidence 11111000 011111110000 00111111111111112222111 0000000000000000
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Q 002549 516 ACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMR 595 (909)
Q Consensus 516 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 595 (909)
|.+ +- -.-...+.++|+++.|+++++.+.
T Consensus 418 a~d---------------le------------------------------------i~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 418 AID---------------LE------------------------------------INKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred hhh---------------hh------------------------------------hhHHHHHHhccCHHHHHHHHHHHH
Confidence 000 00 011122445555555555555554
Q ss_pred hCCCCCCHHHHHHH--HHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC
Q 002549 596 FYNIEPSEDLYRSM--VVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD 673 (909)
Q Consensus 596 ~~~~~p~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 673 (909)
+.+-+..+..-+.+ +..+.--.++..|.++.+.++. ++.-++.+...-++.-...|++++|.+.|++++.. ...-
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln--~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n-dasc 523 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN--IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN-DASC 523 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc--ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC-chHH
Confidence 33222222221111 1122223356667777666654 44445566666677777889999999999988876 1222
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 002549 674 RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDA 753 (909)
Q Consensus 674 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 753 (909)
+.....++-.+-..|++++|++.|-++...-.+ +...+..+.+.|....+...|++++.+.... ++.++.++..|.+.
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~il~n-n~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dl 601 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAILLN-NAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADL 601 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHH
Confidence 333344455677889999999999887654333 6667778888898899999999998876543 46668888899999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhh-ccCCHHH
Q 002549 754 FARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYT-GIEDFKK 832 (909)
Q Consensus 754 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 832 (909)
|-+.|+...|.+++-.--.. ++.+..+..+|...|....-.++|+..|+++-- +.|+...|..++..|. +.|++++
T Consensus 602 ydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred hhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHH
Confidence 99999999998877654432 345889999999999999999999999999875 7899999999988775 4599999
Q ss_pred HHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHH
Q 002549 833 TIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCRPEEGLSLMH 873 (909)
Q Consensus 833 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 873 (909)
|+++|+...+ .-| |..++..|++.....|. .+|.++-+
T Consensus 679 a~d~yk~~hr--kfpedldclkflvri~~dlgl-~d~key~~ 717 (840)
T KOG2003|consen 679 AFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL-KDAKEYAD 717 (840)
T ss_pred HHHHHHHHHH--hCccchHHHHHHHHHhccccc-hhHHHHHH
Confidence 9999999987 456 66888899998888775 33444433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-14 Score=163.05 Aligned_cols=446 Identities=12% Similarity=0.064 Sum_probs=219.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 002549 196 CSRESNLEEAMKVYGDLEAHNCQPDL--WTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVE 273 (909)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 273 (909)
..+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++..... .........+...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 445666666666666666553 322 222 55666666666666666666665211 112222233344555566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002549 274 KVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEML 353 (909)
Q Consensus 274 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 353 (909)
+|.++++++.+.. +.+...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 6666666666654 334555555556666666666666666666554 3444444333333333444444666666665
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHH
Q 002549 354 DASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQAL 433 (909)
Q Consensus 354 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 433 (909)
+.. +-+...+..+.....+.|-...|.++..+- |+..+-...... +.+.|.+..+- +..++.
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~----a~~~~~-- 258 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRM----AVLPTR-- 258 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhh----cccccc--
Confidence 543 123444455555555555555555443331 221111111000 01111111110 101100
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHc-CCCC-CHHH----HHHHHHHH
Q 002549 434 YEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRN-GIEL-DHEK----LLSILSSY 507 (909)
Q Consensus 434 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~-d~~~----~~~l~~~~ 507 (909)
....++..+ +.|+.-++.++.. +..| +... ..-.+-++
T Consensus 259 --------~~~~r~~~~----------------------------d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL 302 (822)
T PRK14574 259 --------SETERFDIA----------------------------DKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL 302 (822)
T ss_pred --------cchhhHHHH----------------------------HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH
Confidence 001111122 2233333333321 1111 1111 12233455
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCC----cccchhhHHHHHHHHHhccc
Q 002549 508 NVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGF----FSKSKTMYESLIHSCEYNER 583 (909)
Q Consensus 508 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~ 583 (909)
...++..++++.++.+...+.+...-+..+++++|...++.++|..+|+.+..... .+++......|..++...++
T Consensus 303 ~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 56666777777777766665544455666666777777777777777776644321 12233334667777777788
Q ss_pred HHHHHHHHHHHHhCCC-----------CCCH--H-HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 002549 584 FAEASQVFSDMRFYNI-----------EPSE--D-LYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAY 649 (909)
Q Consensus 584 ~~~A~~~~~~m~~~~~-----------~p~~--~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 649 (909)
+++|..+++.+.+... .||+ . .....+..+.-.|+..+|.+.++.++. ..|.+..+...++.++
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIY 460 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 8888888777765211 1111 1 122233344555555555555555544 4455555555555555
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002549 650 GRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGP 705 (909)
Q Consensus 650 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 705 (909)
...|...+|++.++.+... .|.+..+....+.++...|++++|..+.+.+.+..|
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 461 LARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 5555555555555444443 333444555555555555555555555555555443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-14 Score=137.33 Aligned_cols=448 Identities=16% Similarity=0.183 Sum_probs=300.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcC--CCCchHHHHHHHHHHHCCCCCCHHHH
Q 002549 112 DTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSG--AMVPNLGVDLLNEVRRSGLRPDIITY 189 (909)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~ 189 (909)
..+++=|.|+.. ...|..+++.-+++.|+..|++-+...-..|+...+-.+ .+-. .-++.|-.|.+.|-+ +..+
T Consensus 114 ~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~-~E~~~Fv~~~~~~E~-S~~s- 189 (625)
T KOG4422|consen 114 LQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPF-AEWEEFVGMRNFGED-STSS- 189 (625)
T ss_pred hhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcc-hhHHHHhhccccccc-cccc-
Confidence 345667777654 457899999999999999998888777777776544332 2222 235566677665533 2222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002549 190 NTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFARE 269 (909)
Q Consensus 190 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 269 (909)
.+.|++.+ -+|+.. +....|+.+||.+.|+--..++|.+++++......+.+..+||.+|.+-.
T Consensus 190 -------WK~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S-- 253 (625)
T KOG4422|consen 190 -------WKSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS-- 253 (625)
T ss_pred -------cccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH--
Confidence 35566554 444443 44678999999999999999999999999998888889999999997754
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-
Q 002549 270 GNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDV----ALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISE- 344 (909)
Q Consensus 270 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~- 344 (909)
+....+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+
T Consensus 254 --~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 254 --YSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred --hhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 33348899999999999999999999999999998766 46778899999999999999999999999888754
Q ss_pred HHHHHHHHHH----CCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHc
Q 002549 345 AANVMSEMLD----ASVKP----TLRTYSALICGYAKAGNRLEAEKTFYCMRRSG----IRPD---HLAYSVMLDIFLRF 409 (909)
Q Consensus 345 A~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~ 409 (909)
|..++.+... +..+| +...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|..
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 4444444432 22222 44566777888889999999998876665321 2333 34567788888999
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHH
Q 002549 410 NETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAI 489 (909)
Q Consensus 410 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 489 (909)
...+.-...|+.|.-+-+-|+..+..-++++..-.|.++-..+++.++..-... -+.+-..+++..+.
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght------------~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT------------FRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh------------hhHHHHHHHHHHHh
Confidence 999999999999998878889999999999999999999999988887762111 11222334444444
Q ss_pred HcCCCCCHHH---HHHHHHHHhccCCHHHHH-HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcc
Q 002549 490 RNGIELDHEK---LLSILSSYNVSGRHLEAC-ELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFS 565 (909)
Q Consensus 490 ~~~~~~d~~~---~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 565 (909)
+....|+... +.....-|. . ++.++. ..-.++.+.. -.....+..+..+.+.|..++|.+++.-....+.--
T Consensus 480 ~~k~hp~tp~r~Ql~~~~ak~a-a-d~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~i 555 (625)
T KOG4422|consen 480 RDKLHPLTPEREQLQVAFAKCA-A-DIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKI 555 (625)
T ss_pred cCCCCCCChHHHHHHHHHHHHH-H-HHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcC
Confidence 4444443221 221111110 0 111111 1111222222 223344555666677777777777776664333222
Q ss_pred cchhhHH---HHHHHHHhcccHHHHHHHHHHHHhC
Q 002549 566 KSKTMYE---SLIHSCEYNERFAEASQVFSDMRFY 597 (909)
Q Consensus 566 ~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~ 597 (909)
|-....| .++....+.+....|+..++-|...
T Consensus 556 p~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 556 PRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 2222233 3344444556666666666666543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-13 Score=145.03 Aligned_cols=752 Identities=12% Similarity=0.048 Sum_probs=407.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHH
Q 002549 73 RHWFSPNARMLATILAVLGKANQENLAVETFMRAESA-VDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVS 151 (909)
Q Consensus 73 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 151 (909)
..|+.|+..+|..+|.-|+..|..+.|- +|.-|... .+.+...++.++.+....++.+.+. .|...|
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 3456777777778888887777777776 55444322 3555667777777777777666654 466677
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHH-HH-------HCC-----------------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 002549 152 FNTLINARLRSGAMVPNLGVDLLNE-VR-------RSG-----------------LRPDIITYNTIISACSRESNLEEAM 206 (909)
Q Consensus 152 ~~~ll~~~~~~~~~~~~~a~~~~~~-~~-------~~~-----------------~~~~~~~~~~li~~~~~~g~~~~A~ 206 (909)
|+.|+.+|...|++.. ++..++ |. ..| .-||.. +.+......|-++.+.
T Consensus 86 yt~Ll~ayr~hGDli~---fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL---FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLL 159 (1088)
T ss_pred HHHHHHHHHhccchHH---HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHH
Confidence 7777777777775421 111111 10 111 122221 2233334446666666
Q ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002549 207 KVYGDLEAHNC-QPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKM 285 (909)
Q Consensus 207 ~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 285 (909)
+++..++.... .|..+ .++-......+-+ ++........-.|++.+|..++.+-...|+.+.|..++.+|.+.
T Consensus 160 kll~~~Pvsa~~~p~~v----fLrqnv~~ntpve--kLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV----FLRQNVVDNTPVE--KLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHhhCCcccccchHHH----HHHHhccCCchHH--HHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 66665543221 11111 2333333333322 22222222111478888888888888889999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002549 286 GFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYS 365 (909)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 365 (909)
|++.+..-|-.|+.+ .++..-+..+++-|.+.|+.|+..|+.-.+-.+.++|....+ +.|. +....++
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~s-q~~hg~t 301 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEGS-QLAHGFT 301 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------cccc-chhhhhh
Confidence 988888777766655 677788888888888889899988888777666665541111 1121 2222222
Q ss_pred HHHHHHHHcC-----CHHH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC--CCCC-CHH
Q 002549 366 ALICGYAKAG-----NRLE-----AEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSN--GFTP-DQA 432 (909)
Q Consensus 366 ~l~~~~~~~g-----~~~~-----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~-~~~ 432 (909)
+-+..-.-.| +.+. ....+.+..-.|+......|...+. ....|+-++..++-..+..- ...+ ++.
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 2222222222 1111 1111122112343333333433322 22357777777776666532 1222 234
Q ss_pred HHHHHHHHHhcCCCHHHHHHHH--HHHHHh---cCCChHHHHHHHHhcccHHHHHHHHHHHH----HcCCCC-------C
Q 002549 433 LYEIMIGVLGRENKGEEIRKVV--RDMKEL---SGINMQEISSILVKGECYDHAAEILRSAI----RNGIEL-------D 496 (909)
Q Consensus 433 ~~~~ll~~~~~~g~~~~a~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----~~~~~~-------d 496 (909)
.+..++.-|.+.-+..-...+. ...... ....|. ++..+... +...++.-+.... .....| -
T Consensus 381 a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~-vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~i 458 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPR-VSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLI 458 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHH-HHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHH
Confidence 4555555444322111111111 111111 000010 11111110 1111111111111 111111 1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccC-CcccchhhHHHHH
Q 002549 497 HEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFG-FFSKSKTMYESLI 575 (909)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~li 575 (909)
......++..++..-+..++...-+.....- -...|..++...+.....+.|...+++..... .+.-+..-+..+.
T Consensus 459 rdi~~ql~l~l~se~n~lK~l~~~ekye~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 459 RDIANQLHLTLNSEYNKLKILCDEEKYEDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHH
Confidence 1123445556666666666554433332221 12578889999999999999998888875432 1122445577888
Q ss_pred HHHHhcccHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcC
Q 002549 576 HSCEYNERFAEASQVFSDMRFYNI-EPS-EDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLK 653 (909)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~m~~~~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 653 (909)
+.+.+.+....+..++.++.+.-. .|+ ..++-.++......|+.+.-.++++-+...|+... ..+.....+.+
T Consensus 536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et-----gPl~~vhLrkd 610 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET-----GPLWMVHLRKD 610 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc-----ccceEEEeecc
Confidence 889999999999999998875322 222 34566677778889999999999888877766542 34556677888
Q ss_pred ChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHH
Q 002549 654 LWQKAESLVGCLRQRCAPVDRKVWNALIKAYAA--SGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVV 731 (909)
Q Consensus 654 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 731 (909)
+...|.++++...+. ..+.+.....+.+.+.+ ..+++.+.++-..+. .|.+.|++.+|.++
T Consensus 611 d~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq----------------~f~k~g~~~~a~di 673 (1088)
T KOG4318|consen 611 DQSAAQEAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQ----------------KFEKLGSCVDAGDI 673 (1088)
T ss_pred chhhhhhcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcchhH----------------HHHhcccccchhhc
Confidence 888888888877665 56666666555555432 234444443332221 13333333333222
Q ss_pred H---------------------------HHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHH
Q 002549 732 I---------------------------QELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRV 784 (909)
Q Consensus 732 ~---------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 784 (909)
. +.+.+.| ....|+..|.+.|+++.|..+|.++. +.|+......
T Consensus 674 ~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg------~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~ 744 (1088)
T KOG4318|consen 674 TETPGVRCRNGRDRDTDEGEIVPLELLLELTHELG------KNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFH 744 (1088)
T ss_pred cccCcccccCCCccccccCccccHHHHHHHHhHhH------HHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHH
Confidence 2 2222222 12237788889999999999999887 6687777777
Q ss_pred HHHHHhccCch---HHHHHHHHHHHHCCCCC----CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 002549 785 MSGLFCKGKRV---RDVEAMVSEMKEAGFKP----DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLII 857 (909)
Q Consensus 785 l~~~~~~~g~~---~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 857 (909)
|+..+.+...- .++....+++.+ ..| +...|...+...++....+.|.+.+++..+....-+...+...++
T Consensus 745 LAsIlr~~n~evdvPe~q~e~ekas~--~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k 822 (1088)
T KOG4318|consen 745 LASILRRMNEEVDVPEIQAETEKASE--LRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLK 822 (1088)
T ss_pred HHHHHHhhchhccchhHHHHHHHHHh--cccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence 77777655443 333333344433 222 222233333333444455678888888887532224577778888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHH
Q 002549 858 MYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEE 905 (909)
Q Consensus 858 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 905 (909)
++.... ..|.+.. ..|...+...-..++..+.+.-.+-+|..
T Consensus 823 ~L~~nd--~~aa~sh----a~Ges~~~l~tsRli~~llRrlgl~EA~~ 864 (1088)
T KOG4318|consen 823 CLVKND--QLAAQSH----ASGESSKELLTSRLINILLRRLGLAEALS 864 (1088)
T ss_pred HHHhcC--HHHHHhc----ccccchhhhhhHHHHHHHHHHhhHHHHHH
Confidence 888665 2222222 22444443333345555555555555554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-11 Score=130.20 Aligned_cols=192 Identities=13% Similarity=0.129 Sum_probs=144.3
Q ss_pred HHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCch
Q 002549 646 IDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRL 725 (909)
Q Consensus 646 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 725 (909)
+......+-+++|..+|++. ..+..+.+.|+. ..++.++|.+..++. . ....|..+..+-.+.|..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~----n--~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERC----N--EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhh----C--ChHHHHHHHHHHHhcCch
Confidence 34444555666776666653 224444444443 346788888877775 2 345799999999999999
Q ss_pred hhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHH
Q 002549 726 NELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEM 805 (909)
Q Consensus 726 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 805 (909)
.+|++-|-+ ..|+..|.-+++...+.|+|++-.+++....+..-.|.+. ..|+.+|++.+++.+-++++
T Consensus 1121 ~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---
Confidence 999988876 4567889999999999999999999999888876566544 56888999999988866655
Q ss_pred HHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 002549 806 KEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEM 875 (909)
Q Consensus 806 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 875 (909)
.-||..-...++.-|...|.++.|.-+|...- .|..|+..+...|.+..|...-+++
T Consensus 1190 ----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1190 ----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred ----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35788888888888999898888877776543 4777788888888888887776655
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-14 Score=147.85 Aligned_cols=246 Identities=12% Similarity=0.058 Sum_probs=137.1
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCcccHHHHHHHHHh
Q 002549 644 DIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPS--PTVDSINGLLQALIV 721 (909)
Q Consensus 644 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 721 (909)
.+...+++.-+..+++..-++....-+ +..|..|+.-+...++.+.|....++....... .+..-+..+.+.+.+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 344445555555555544444333212 266777888887788888888887777543221 133345666777777
Q ss_pred cCchhhHHHHHHHHHhCCC-Ccc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHH
Q 002549 722 DGRLNELYVVIQELQDMDF-KIS-KSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVE 799 (909)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 799 (909)
.+...++..++..+.+.-. .|. ..++..+++.....|+.+...++++-+...|+.-+ ..++....+.++...|.
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ 616 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQ 616 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhh
Confidence 8888888888877766322 121 34455566666777777777777777776554432 23333344555555555
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHH---------------------hhccCCHHHHHHHHHHH---HHcC---------CC
Q 002549 800 AMVSEMKEAGFKPDLSIWNSMLKL---------------------YTGIEDFKKTIQVYQEI---QEAD---------LQ 846 (909)
Q Consensus 800 ~~~~~~~~~~~~p~~~~~~~l~~~---------------------~~~~g~~~~A~~~~~~~---~~~~---------~~ 846 (909)
+.++.-.++ .+|.......+... |.+.|++.+|.++.+.= .+.+ +.
T Consensus 617 ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~ 695 (1088)
T KOG4318|consen 617 EAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIV 695 (1088)
T ss_pred hcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccc
Confidence 555444332 23333332222222 22333333332222210 0000 00
Q ss_pred C---------ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCH
Q 002549 847 P---------DEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQL 900 (909)
Q Consensus 847 p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 900 (909)
| +......|...|.+.|+++.|..++.++. ..|+..+..+|+.++.+.+.-
T Consensus 696 ~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~e 755 (1088)
T KOG4318|consen 696 PLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEE 755 (1088)
T ss_pred cHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchh
Confidence 0 11224456678888899999998888885 678888888888887766543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-13 Score=133.74 Aligned_cols=305 Identities=16% Similarity=0.247 Sum_probs=157.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--hcCChhHH-HHHHHHhhhC----------------
Q 002549 49 CFVVKWVGQVSWQRALEVYEWLNLRHWFSPNARMLATILAVLG--KANQENLA-VETFMRAESA---------------- 109 (909)
Q Consensus 49 ~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a-~~~~~~~~~~---------------- 109 (909)
..+++...++....+.-+++.|. +.+.+.++.+--.+++... ...++.-| ++.|-.+...
T Consensus 120 ~nL~kmIS~~EvKDs~ilY~~m~-~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL 198 (625)
T KOG4422|consen 120 NNLLKMISSREVKDSCILYERMR-SENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADL 198 (625)
T ss_pred hHHHHHHhhcccchhHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHH
Confidence 45667777888888888998884 4446777776666655433 22222222 2233333221
Q ss_pred ----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCCCCCC
Q 002549 110 ----VDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPD 185 (909)
Q Consensus 110 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 185 (909)
.|.+..+|..||.++|+--..++|.+++++-.+.....+..+||.+|.+-+-+. ..+++.+|....+.||
T Consensus 199 ~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~------~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 199 LFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV------GKKLVAEMISQKMTPN 272 (625)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc------cHHHHHHHHHhhcCCc
Confidence 234555666666666666666666666666655555556666666665543332 1345556665556666
Q ss_pred HHHHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH-HHHHHHHHHH----CCCCC--
Q 002549 186 IITYNTIISACSRESNLEEA----MKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEK-AEQLFKELES----KGFFP-- 254 (909)
Q Consensus 186 ~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~~~-- 254 (909)
..|+|+++++..+.|+++.| .+++.+|++.|+.|+..+|..+|..+++.++..+ |..++.++.. +.++|
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 66666666666666655433 3344555566666666666666666665555533 2223322221 11111
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHH
Q 002549 255 --DAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDV---VTY 329 (909)
Q Consensus 255 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 329 (909)
|...|...+..|.+..+.+-|.++..-+.... |. .-+.|+. .-|
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~---N~----------------------------~~ig~~~~~~fYy 401 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD---NW----------------------------KFIGPDQHRNFYY 401 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC---ch----------------------------hhcChHHHHHHHH
Confidence 33344445555555555555555444332210 00 0001111 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002549 330 TVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSG 391 (909)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 391 (909)
..+....|+....+.-...|+.|+-.-+-|+..+...++++..-.|.++-..+++..+...|
T Consensus 402 r~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 402 RKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 34444555555555555566665554445555555555555555555555555555555443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-14 Score=138.11 Aligned_cols=474 Identities=13% Similarity=0.103 Sum_probs=276.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHH
Q 002549 223 TYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYN-SLLYAFAREGNVEKVKEISENMLKMGFGKD----EMTYNTI 297 (909)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l 297 (909)
+...|..-|.......+|+..++-+.+....||.-... .+...+.+...+.+|.+.++..++.-...+ ....+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 33445556666777788888888887776666654432 234556677888888888887776532222 2234555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------------HHHHH
Q 002549 298 IHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPT------------LRTYS 365 (909)
Q Consensus 298 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~ 365 (909)
...+.+.|.++.|+..|+...+. .|+..+-..|+-++..-|+.++..+.|..|+..-..|| ....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 55677888888888888887765 57777655566566667888888888888875432222 22222
Q ss_pred HHHH-----HHHHcCCHHHHHHHH---HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 002549 366 ALIC-----GYAKAGNRLEAEKTF---YCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIM 437 (909)
Q Consensus 366 ~l~~-----~~~~~g~~~~a~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 437 (909)
.-|. -.-+.+ -..|++.. .++...-+.|+... + .+-+.+.+..-....+ -...-..-
T Consensus 361 eai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~------g------~dwcle~lk~s~~~~l--a~dlei~k 425 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAA------G------CDWCLESLKASQHAEL--AIDLEINK 425 (840)
T ss_pred HHHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccchhc------c------cHHHHHHHHHhhhhhh--hhhhhhhH
Confidence 2221 111111 11122211 11111112222110 0 0111111111100000 00001112
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCChHHH----HHH-HHh-cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 002549 438 IGVLGRENKGEEIRKVVRDMKELSGINMQEI----SSI-LVK-GECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSG 511 (909)
Q Consensus 438 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~-~~~-~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~ 511 (909)
...|.+.|+++.|.++++-+.+.+....... ..+ +.+ +.++..|.+.-..++.. -.-+......-.+.....|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-dryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-DRYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc-cccCHHHhhcCCceeeecC
Confidence 2346677777777777777766554444332 222 222 33455555555544422 1223333333334455667
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHH
Q 002549 512 RHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVF 591 (909)
Q Consensus 512 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 591 (909)
++++|.+.+..++..+..- ......+...+...|++++|++.|-++... ...+......+...|....+..+|++++
T Consensus 505 d~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i--l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI--LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 7777777777776654332 222222344466677788887777665432 2456667777777777777788888777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCC
Q 002549 592 SDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAP 671 (909)
Q Consensus 592 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 671 (909)
-+.... ++.|+..+..+...|-+.|+...|.+.+-.--. .-|.+..+...|+..|....-+++|+.+|+++.- ..
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 655431 344566777777788888887777776544333 5677788888888888888888888888887653 46
Q ss_pred CChHhHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcC
Q 002549 672 VDRKVWNALIK-AYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDG 723 (909)
Q Consensus 672 ~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 723 (909)
|+..-|..++. |+.+.|++.+|.++++.+.++.|. +..++..|++.+...|
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclkflvri~~dlg 708 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFLVRIAGDLG 708 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHHHHHHHhcccc
Confidence 77778877664 445668888888888888887776 7888888887776666
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.4e-15 Score=156.94 Aligned_cols=285 Identities=11% Similarity=-0.040 Sum_probs=185.5
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC-hHhHHHHHHHHHHcCCHHHHH
Q 002549 616 MDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD-RKVWNALIKAYAASGCYERAR 694 (909)
Q Consensus 616 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 694 (909)
.|+++.|.+.+.+..+ ..|+....+...+.++...|+++.|.+.+.++.+. .|.+ ..+.-.....+...|+++.|.
T Consensus 97 ~g~~~~A~~~l~~~~~--~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 97 EGDYAKAEKLIAKNAD--HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CCCHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4556666655555544 33444444455556666667777777777776554 2222 223334466667777777777
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHH---HhcCCHHHHHHHHHHHH
Q 002549 695 AVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAF---ARSGNIFEVKKIYHGMK 771 (909)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~ 771 (909)
..++.+.+..|. +...+..+...+.+.|++++|.+++.++.+.+..++.........++ ...+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777777777665 55566677777777777777777777777765433322211111111 23333333444555555
Q ss_pred hcCC---CchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHh---HHHHHHHhhccCCHHHHHHHHHHHHHcCC
Q 002549 772 AAGY---FPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSI---WNSMLKLYTGIEDFKKTIQVYQEIQEADL 845 (909)
Q Consensus 772 ~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 845 (909)
+... ..++..+..++..+...|+.++|++.+++.++. .||... ...........++.+.+++.+++.++ .
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~ 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--N 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--h
Confidence 4321 126778888888888999999999999998873 455532 12222223345788888889988888 7
Q ss_pred CCChh---hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 846 QPDED---SFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 846 ~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
.|++. ...++++.+.+.|+|++|.++|++.......|++..+.+++..+.+.|+.++|.++++
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88554 4558899999999999999999954444567888888899999999999999988775
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.7e-14 Score=137.13 Aligned_cols=228 Identities=14% Similarity=0.102 Sum_probs=186.9
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 002549 642 YVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIV 721 (909)
Q Consensus 642 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 721 (909)
+..-+..+.-.|+...|.+-|+.+++. .+-+...|--+..+|...++.++-...|+++.+.+|. ++.+|..-...+.-
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l-~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKL-DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFL 406 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhc-CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHH
Confidence 333445566778999999999999887 4444455777788899999999999999999999888 88889999999999
Q ss_pred cCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHH
Q 002549 722 DGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAM 801 (909)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 801 (909)
.+++++|+.-|++.+..+ +.+...|-.+.-+..+.+.++++...|+..+++ ++..+++|+-....+...++++.|.+.
T Consensus 407 L~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred HHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHH
Confidence 999999999999988765 333556677777888999999999999999874 344678999999999999999999999
Q ss_pred HHHHHHCCCCCCH-------HhH-HHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHH
Q 002549 802 VSEMKEAGFKPDL-------SIW-NSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLM 872 (909)
Q Consensus 802 ~~~~~~~~~~p~~-------~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 872 (909)
|+.+++ +.|+. ..+ +--+-.+.-.+++.+|+++++++++ +.|.. .++-.|+......|+.++|+++|
T Consensus 485 YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 485 YDKAIE--LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred HHHHHh--hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999987 56652 111 1111123345899999999999999 99976 78999999999999999999999
Q ss_pred HHHHH
Q 002549 873 HEMRK 877 (909)
Q Consensus 873 ~~~~~ 877 (909)
++...
T Consensus 561 Eksa~ 565 (606)
T KOG0547|consen 561 EKSAQ 565 (606)
T ss_pred HHHHH
Confidence 99875
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.9e-11 Score=116.57 Aligned_cols=445 Identities=11% Similarity=0.142 Sum_probs=258.4
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002549 234 CGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQL 313 (909)
Q Consensus 234 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 313 (909)
.+++..|..+|++.+..... +...|...+.+-.+..++..|..+++..+..- |.-...|-..+.+--..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHH
Confidence 33444444444444433211 33334444444444444444444444444321 11112233333333344555555555
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC
Q 002549 314 YRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRS-GI 392 (909)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~ 392 (909)
|+...+- .|+..+|.+.|..-.+....+.|..+++..+-. .|++.+|.--...=-+.|....|..+|+...+. |-
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 5554443 455555555555555555555555555554432 345555544444444555555555555544431 00
Q ss_pred -CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHH
Q 002549 393 -RPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPD--QALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEIS 469 (909)
Q Consensus 393 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 469 (909)
.-+...+.+....-.++..++.|.-+|+-.++. ++.+ ...|..+...--+-|+.....+.+-.-.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk---------- 308 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK---------- 308 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh----------
Confidence 011222333333334555666777777666654 1212 23333333333333443333322211000
Q ss_pred HHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh-hHHHHHHH---HH--
Q 002549 470 SILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPP-LTQAFIIM---LC-- 543 (909)
Q Consensus 470 ~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~---~~-- 543 (909)
--|+..+.. -+.|-.+|-..+..-...|+.+...++++.++...|+.... .+...+-. |+
T Consensus 309 -------------~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 309 -------------FQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred -------------hHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence 012222222 23455566666666677788888888888888766554322 22332222 21
Q ss_pred ---hcCCHHHHHHHHHHhhccCCcccchhhHHHHHH----HHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 002549 544 ---KAQKLDAALEEYSNAWGFGFFSKSKTMYESLIH----SCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKM 616 (909)
Q Consensus 544 ---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 616 (909)
...+.+.+.++|+...+. +|....++.-+=- --.++.+...|..++...+ |.-|...+|...+..-.+.
T Consensus 375 eEle~ed~ertr~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL 450 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQL 450 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHH
Confidence 367889999999998874 5666655554433 3446788999999988776 6789999999999999999
Q ss_pred CChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCC-CCChHhHHHHHHHHHHcCCHHHHHH
Q 002549 617 DFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCA-PVDRKVWNALIKAYAASGCYERARA 695 (909)
Q Consensus 617 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 695 (909)
++++.+..+|++.++ ..|.+..++...+..-...|+++.|..+|+-+++... .-....|.+.|.-=...|.++.|..
T Consensus 451 ~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~ 528 (677)
T KOG1915|consen 451 REFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARA 528 (677)
T ss_pred hhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHH
Confidence 999999999999998 7899999999999999999999999999999886521 1124567777777778899999999
Q ss_pred HHHHHHHcCCCCCcccHHHHHH
Q 002549 696 VFNTMMRDGPSPTVDSINGLLQ 717 (909)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~l~~ 717 (909)
++++.++.. +.+..|-+...
T Consensus 529 LYerlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 529 LYERLLDRT--QHVKVWISFAK 548 (677)
T ss_pred HHHHHHHhc--ccchHHHhHHH
Confidence 999999853 34446665554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-11 Score=119.69 Aligned_cols=451 Identities=11% Similarity=0.109 Sum_probs=267.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 002549 291 EMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTL-RTYSALIC 369 (909)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~ 369 (909)
...|......--..+++..|..+|+..+... ..+...|.-.+.+-.++..+..|..+++..+.. -|-+ ..|...+.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence 3344444444445555666666666665543 334445555566666666666666666666553 2222 22333344
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHH
Q 002549 370 GYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEE 449 (909)
Q Consensus 370 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 449 (909)
+=-..|++..|.++|++-.+ ..|+...|.+.|+.-.+...++.|..++++..-. .|+..+|-.....-.++|....
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 44456666777777766655 3567777777777777777777777777776643 5677777666666666777666
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 002549 450 IRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASE 529 (909)
Q Consensus 450 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 529 (909)
+..+++...+..+..... ...+.+...--.....++.|.-++..++++-|.
T Consensus 226 aR~VyerAie~~~~d~~~-----------------------------e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk 276 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEA-----------------------------EILFVAFAEFEERQKEYERARFIYKYALDHIPK 276 (677)
T ss_pred HHHHHHHHHHHhhhHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 666666555422221110 001111111222233344444445544444333
Q ss_pred CC-hhhHHHHHHHHHhcCC---HHHHH-----HHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCC
Q 002549 530 ST-PPLTQAFIIMLCKAQK---LDAAL-----EEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIE 600 (909)
Q Consensus 530 ~~-~~~~~~l~~~~~~~g~---~~~A~-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 600 (909)
.. ..++..+...--+-|+ +++++ --|+..+..+ |.|-.+|--.+..-...|+.+...++|+..+. +++
T Consensus 277 ~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n--p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvp 353 (677)
T KOG1915|consen 277 GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN--PYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVP 353 (677)
T ss_pred ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCC
Confidence 22 2233333333223333 23332 2355566555 77888888888888888999999999998875 455
Q ss_pred CCHH--HHHHHH----H-HH---hhcCChhhHHHHHHHHHHcCCCCCC----chHHHHHHHHhhhcCChHHHHHHHHHHH
Q 002549 601 PSED--LYRSMV----V-AY---CKMDFPETAHFIADQAEKKGIPFED----LSIYVDIIDAYGRLKLWQKAESLVGCLR 666 (909)
Q Consensus 601 p~~~--~~~~l~----~-~~---~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 666 (909)
|-.. .|...+ . +| ....+.+.+.++|+..++ +.|-. ..++...+....++.++..|.+++..++
T Consensus 354 p~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI 431 (677)
T KOG1915|consen 354 PASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI 431 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 5321 122111 1 22 346678888888888887 44543 3344455555677788888888888877
Q ss_pred hcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCC-CccHH
Q 002549 667 QRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDF-KISKS 745 (909)
Q Consensus 667 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 745 (909)
.. .|-..++...|..=.+.++++.+..++++.++-+|. +..+|......-...|+++.|..+|.-.++... .-...
T Consensus 432 G~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel 508 (677)
T KOG1915|consen 432 GK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPEL 508 (677)
T ss_pred cc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence 54 566777777777777888888888888888887777 777777776666677777777777777665542 22234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 002549 746 SILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSG 787 (909)
Q Consensus 746 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 787 (909)
.+-+.|+.-...|.+++|..+|+++++.. +-..+|.+.+.
T Consensus 509 lwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 509 LWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAK 548 (677)
T ss_pred HHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHH
Confidence 44555555566777777777777777632 33335544443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-12 Score=126.00 Aligned_cols=194 Identities=14% Similarity=0.097 Sum_probs=118.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 002549 538 FIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMD 617 (909)
Q Consensus 538 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 617 (909)
++..|.-.++.++|+..|+++++.+ |....+|+.++.-|....+...|++-++..+
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---------------------- 391 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---------------------- 391 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHH----------------------
Confidence 4445555666677777777776665 6666666666666665555555555555444
Q ss_pred ChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q 002549 618 FPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVF 697 (909)
Q Consensus 618 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 697 (909)
+ +.|.+..+|..++++|.-.+...-|+-.|+++.+. .|.|+.+|.+|+.+|.+.++.++|+..|
T Consensus 392 -------------d--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 392 -------------D--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred -------------h--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 3 56666666666666666666666677777766665 5667777777777777777777777777
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhC----CCCcc-H-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002549 698 NTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDM----DFKIS-K-SSILLMLDAFARSGNIFEVKKIYHGMK 771 (909)
Q Consensus 698 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 771 (909)
.+++..+.. +...+..|+..|-+.++.++|.+.+.+.++. |...+ . ....-|...+.+.+++++|..+.....
T Consensus 456 krai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 456 KRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 777765544 4456666777777777777776666665442 21111 1 111114444555666666655555444
Q ss_pred h
Q 002549 772 A 772 (909)
Q Consensus 772 ~ 772 (909)
.
T Consensus 535 ~ 535 (559)
T KOG1155|consen 535 K 535 (559)
T ss_pred c
Confidence 3
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-12 Score=124.65 Aligned_cols=365 Identities=12% Similarity=0.027 Sum_probs=195.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHH--HHHH
Q 002549 427 FTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKL--LSIL 504 (909)
Q Consensus 427 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~--~~l~ 504 (909)
...|...+....-.+.+.|....|...+.......|..+.....+-.-....+.+ .... .+...|...+ --+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~----~~l~-~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEIL----SILV-VGLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHH----HHHH-hcCcccchHHHHHHHH
Confidence 3445444444444566777778888877777766666555433221111111111 1111 1111111111 1122
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcc-cchhhHHHHHHHHHhccc
Q 002549 505 SSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFS-KSKTMYESLIHSCEYNER 583 (909)
Q Consensus 505 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~ 583 (909)
.++......+++..-.......|.+....+-+..+.......+++.|+.+|+.+.+.+... .+..+|+.++-.-....+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 3344444555555555555555555555555555555555666666666666665543111 134444444422211111
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHH
Q 002549 584 FAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVG 663 (909)
Q Consensus 584 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 663 (909)
+..+.+-...=-+-.++|...+.+.|.-.++.|+|+.+|+.+++ ++|....+|..++--|...++...|++-|+
T Consensus 315 ----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 ----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred ----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11111111000122345556666666666666777777777666 666666667777777777777777777777
Q ss_pred HHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCcc
Q 002549 664 CLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKIS 743 (909)
Q Consensus 664 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 743 (909)
.+++. .|-|-..|..|+.+|.-.+...=|+-.|+++.+..|. |...|..|+.+|.+.++.++|++.|.+....+ ..+
T Consensus 389 rAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 66665 3556666666777776666666677777776665555 66666667777766777777777666666555 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCc-hHHHHHHHHHHHhccCchHHHHHHHHHH
Q 002549 744 KSSILLMLDAFARSGNIFEVKKIYHGMKAA----G-YFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEM 805 (909)
Q Consensus 744 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 805 (909)
...+..+...|.+.++.++|...|++.++. | +.| +......|...+.+.+++++|.......
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 555666666666666666666666666541 1 222 2333334455555555555555544444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-09 Score=111.14 Aligned_cols=578 Identities=12% Similarity=0.136 Sum_probs=320.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002549 187 ITYNTIISACSRESNLEEAMKVYGDLEAH-NCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYA 265 (909)
Q Consensus 187 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 265 (909)
..|-..+....++|++..-...|+..+.. .+.-....|...+......|-++-+..++++.++. ++..-.-.|.-
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 36777788888899999999999887654 22234457888888888888999999999998875 44446777888
Q ss_pred HHHcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHhcCCCCCH--HHHHHHHH
Q 002549 266 FAREGNVEKVKEISENMLKM------GFGKDEMTYNTIIHMYGKQGQHDVAL---QLYRDMKLSGRNPDV--VTYTVLID 334 (909)
Q Consensus 266 ~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~--~~~~~li~ 334 (909)
+++.+++++|.+.+..++.. ..+.+...|.-+-+..++.-+.-..+ .+++.+... .+|- ..|++|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 88999999998888776532 12445556666666665544332222 233333322 3444 36788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 002549 335 SLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNK 414 (909)
Q Consensus 335 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 414 (909)
-|.+.|.+++|..+|++.... ...+.-|+.+..+|+.-....-+..+= ...+.+..+. ..-+++-
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~ 321 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLEL 321 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHH
Confidence 888888888888888887654 235556666666666533222221111 0000111111 1112333
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCC
Q 002549 415 AMMLYQEMVSNGFTPDQALYEIMIG-VLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGI 493 (909)
Q Consensus 415 A~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 493 (909)
...-|+.+.+.+ | .+++ .+++++ ...+.+..+ ..-+..++..+-...|.++++. +
T Consensus 322 ~~a~~e~lm~rr--~------~~lNsVlLRQn-~~nV~eW~k--------------RV~l~e~~~~~~i~tyteAv~~-v 377 (835)
T KOG2047|consen 322 HMARFESLMNRR--P------LLLNSVLLRQN-PHNVEEWHK--------------RVKLYEGNAAEQINTYTEAVKT-V 377 (835)
T ss_pred HHHHHHHHHhcc--c------hHHHHHHHhcC-CccHHHHHh--------------hhhhhcCChHHHHHHHHHHHHc-c
Confidence 344444444331 1 1111 111111 001111110 1111223333333344333322 1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccc---hhh
Q 002549 494 ELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKS---KTM 570 (909)
Q Consensus 494 ~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 570 (909)
.|- ..+.....++..+...|-..|+++.|..+|+++.+.+ ++.- ..+
T Consensus 378 dP~-----------------------------ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~-y~~v~dLa~v 427 (835)
T KOG2047|consen 378 DPK-----------------------------KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP-YKTVEDLAEV 427 (835)
T ss_pred Ccc-----------------------------cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC-ccchHHHHHH
Confidence 110 1122233455566666666777777777777766543 2211 233
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 002549 571 YESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYG 650 (909)
Q Consensus 571 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 650 (909)
|..-...=.++.+++.|+.+.++... .|.... ..+...+.+-.++ ++ .+..+|...++...
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~---vP~~~~-----~~~yd~~~pvQ~r-lh----------rSlkiWs~y~DleE 488 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATH---VPTNPE-----LEYYDNSEPVQAR-LH----------RSLKIWSMYADLEE 488 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh-----hhhhcCCCcHHHH-HH----------HhHHHHHHHHHHHH
Confidence 44444444455666666666655542 333222 1112222222111 11 13456677777777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHH-h--cCchh
Q 002549 651 RLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTV-DSINGLLQALI-V--DGRLN 726 (909)
Q Consensus 651 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~-~--~g~~~ 726 (909)
..|-++....+|+++++..+. .+.+.-..+.-+-.+.-++++.+++++-+...+-|++ ..|+..+.-+. + ..+.+
T Consensus 489 s~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 778888888888888766333 3333333333344566788899999888887666654 33555544333 2 23568
Q ss_pred hHHHHHHHHHhCCCCccHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhccCchHHHHHHH
Q 002549 727 ELYVVIQELQDMDFKISKS--SILLMLDAFARSGNIFEVKKIYHGMKAAGYFP--TMYLYRVMSGLFCKGKRVRDVEAMV 802 (909)
Q Consensus 727 ~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 802 (909)
.|..+|++..+ +.+|... .|......-.+-|-...|+.++++... ++.+ -...||..|.--...=-......++
T Consensus 568 raRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iY 645 (835)
T KOG2047|consen 568 RARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIY 645 (835)
T ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHH
Confidence 88888888887 5555532 233233333455777788888888665 2333 3456676665433332344566778
Q ss_pred HHHHHCCCCCCHHhHH---HHHHHhhccCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCC
Q 002549 803 SEMKEAGFKPDLSIWN---SMLKLYTGIEDFKKTIQVYQEIQEADLQP--DEDSFNTLIIMYCRDCR 864 (909)
Q Consensus 803 ~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 864 (909)
+++++ .-||...-. -+...=++.|..+.|..+|...-+. ..| +..-|...-..-.+.|+
T Consensus 646 ekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 646 EKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 88877 456664322 2333446678888888888777663 345 33556666677777777
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-15 Score=152.28 Aligned_cols=270 Identities=13% Similarity=0.130 Sum_probs=161.1
Q ss_pred hhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcC--CCCChHhHHHHHHHHHHcCCHHHHHHHH
Q 002549 620 ETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRC--APVDRKVWNALIKAYAASGCYERARAVF 697 (909)
Q Consensus 620 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 697 (909)
++|...|...-. ..++...+...++.+|.+.+++++|+.+|+.+.+.. .-.+..+|...+.-+ .+ +-++.++
T Consensus 336 ~~A~~~~~klp~--h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~-~v~Ls~L 409 (638)
T KOG1126|consen 336 REALNLFEKLPS--HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QD-EVALSYL 409 (638)
T ss_pred HHHHHHHHhhHH--hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---Hh-hHHHHHH
Confidence 344444444222 233444555666666666666666666666655431 011344444333221 11 1122222
Q ss_pred -HHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002549 698 -NTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYF 776 (909)
Q Consensus 698 -~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 776 (909)
+.+++.++. ++.+|-.++++|.-+++.+.|++.|++..+.+ +-...+|+.+..-+....++|.|...|+..+.
T Consensus 410 aq~Li~~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---- 483 (638)
T KOG1126|consen 410 AQDLIDTDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG---- 483 (638)
T ss_pred HHHHHhhCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc----
Confidence 222333333 55666666666666666666666666666554 12345556555666666677777777777664
Q ss_pred chHHHHHH---HHHHHhccCchHHHHHHHHHHHHCCCCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC-Chhh
Q 002549 777 PTMYLYRV---MSGLFCKGKRVRDVEAMVSEMKEAGFKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP-DEDS 851 (909)
Q Consensus 777 p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~ 851 (909)
.++.+||+ ++..|.|.++++.|+-.|+++.+ +.|. .+....++..+.+.|+.++|+++++++.- ++| |+.+
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~ 559 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLC 559 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchh
Confidence 44444443 44567777777777777777776 5554 35666666677777777777777777777 677 5566
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCCHHHHHHhh
Q 002549 852 FNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK-LDTYKSLISAFGKQQQLEQAEELL 907 (909)
Q Consensus 852 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 907 (909)
-...+..+...+++++|+..++++.+ +.|+ ...+..++..|.+.|+.+.|+.-|
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 66777777777777777777777763 3554 556667777777777777776644
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9e-10 Score=117.90 Aligned_cols=612 Identities=15% Similarity=0.134 Sum_probs=372.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002549 189 YNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNA-----MISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLL 263 (909)
Q Consensus 189 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 263 (909)
+-.+.+.|.+.|-+..|++.|.++... .. +++.+. .+-.|...-.++.+.+.++.|...++..|..+...+.
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DI--KR-~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDI--KR-VVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHH--HH-HHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 566778899999999999988876542 11 111111 2334556668899999999999998888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC-----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH------------hc
Q 002549 264 YAFAREGNVEKVKEISENMLKM-----------GFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMK------------LS 320 (909)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------~~ 320 (909)
.-|+..--.+...++|+..... ++..|+.+.-..|.+.|+.|++.+..++.++-. +.
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 8888776677777777765543 345677777788999999999988887755421 11
Q ss_pred C---------------CCCCHHHH------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHH
Q 002549 321 G---------------RNPDVVTY------TVLIDSLGKANKISEAANVMSEMLDASVKP-----------TLRTYSALI 368 (909)
Q Consensus 321 ~---------------~~~~~~~~------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~ 368 (909)
. ..+|.+.| ...|..|.+.=+....-.+...+++-.+.- ......-|.
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHH
Confidence 0 01122221 112333333222222111111111111100 111124456
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCH-
Q 002549 369 CGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKG- 447 (909)
Q Consensus 369 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~- 447 (909)
.-.-+.+++.--...++.....|. .|..++|+|...|..++.-.+- .++.+-.-| +..+.-||...+.
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~------fLkeN~yYD----s~vVGkYCEKRDP~ 914 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPER------FLKENPYYD----SKVVGKYCEKRDPH 914 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHH------hcccCCcch----hhHHhhhhcccCCc
Confidence 677788888888888888888886 6889999999888766543221 111111111 1112223322221
Q ss_pred ------------HHHHHHHH------HHHH--hcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCC--CCHHHHHHHHH
Q 002549 448 ------------EEIRKVVR------DMKE--LSGINMQEISSILVKGECYDHAAEILRSAIRNGIE--LDHEKLLSILS 505 (909)
Q Consensus 448 ------------~~a~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~d~~~~~~l~~ 505 (909)
.+...+.. ...+ ....+++-+...+....- --.++.++.+..+++ .|+...+....
T Consensus 915 lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~--~rRqLiDqVv~tal~E~~dPe~vS~tVk 992 (1666)
T KOG0985|consen 915 LACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENP--YRRQLIDQVVQTALPETQDPEEVSVTVK 992 (1666)
T ss_pred eEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccCh--HHHHHHHHHHHhcCCccCChHHHHHHHH
Confidence 11111110 0000 011122222222221111 122445555554433 46666777788
Q ss_pred HHhccCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccH
Q 002549 506 SYNVSGRHLEACELIEFVKQHAS-ESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERF 584 (909)
Q Consensus 506 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 584 (909)
++...+-..+-+++++.+.-.+. -+...-...++..-+-..+.....+..+++-..+ -..+...+..++-+
T Consensus 993 AfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD--------a~~ia~iai~~~Ly 1064 (1666)
T KOG0985|consen 993 AFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD--------APDIAEIAIENQLY 1064 (1666)
T ss_pred HHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC--------chhHHHHHhhhhHH
Confidence 88888999999999988764332 2222222333333333344455556666654432 12344556677888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHH
Q 002549 585 AEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGC 664 (909)
Q Consensus 585 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 664 (909)
+||..+|+..- .+......++. ..+..++|.++.++. +.+.+|..++.+....|...+|++-|-+
T Consensus 1065 EEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~-------n~p~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1065 EEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC-------NEPAVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred HHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh-------CChHHHHHHHHHHHhcCchHHHHHHHHh
Confidence 99999998753 34444444443 345667777665442 4578999999999999999999888765
Q ss_pred HHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccH
Q 002549 665 LRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISK 744 (909)
Q Consensus 665 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 744 (909)
+ .|+..|...+....+.|+|++-.+++..+.++..+|.+. ..|+.+|++.++..+-.+++. -|+.
T Consensus 1130 a------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~ 1194 (1666)
T KOG0985|consen 1130 A------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNV 1194 (1666)
T ss_pred c------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCc
Confidence 3 378889999999999999999999999999887776654 468889999998877555442 4778
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHh
Q 002549 745 SSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLY 824 (909)
Q Consensus 745 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 824 (909)
.....+.+-|...|.++.|.-+|... ..|..|...+...|++..|...-+++ .+..+|--...+|
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFAC 1259 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHH
Confidence 88888999999999999998888654 35677777788888888777766554 2445677776677
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 002549 825 TGIEDFKKTIQVYQEIQEADLQP--DEDSFNTLIIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 825 ~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 876 (909)
...+.+.-| .-.|++- ...-+-.++.-|-.-|-++|-+.+++...
T Consensus 1260 vd~~EFrlA-------QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1260 VDKEEFRLA-------QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hchhhhhHH-------HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 665544333 1122332 22334445555555555555555555444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-12 Score=129.06 Aligned_cols=215 Identities=12% Similarity=0.033 Sum_probs=121.4
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Q 002549 634 IPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSIN 713 (909)
Q Consensus 634 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 713 (909)
..|+.+..|..++--|...|++.+|++.|.+.... .+.-...|-.++..|.-.|..++|...+..+-+.-+. ....+-
T Consensus 307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l-D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~L 384 (611)
T KOG1173|consen 307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL-DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSL 384 (611)
T ss_pred hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc-CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHH
Confidence 34444444444444444445555555555444433 2222344444555555555555555555554444332 222233
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCC----chHHHHHHHHH
Q 002549 714 GLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA--AGYF----PTMYLYRVMSG 787 (909)
Q Consensus 714 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----p~~~~~~~l~~ 787 (909)
.++--|.+.++..-|.+.|.+..... +.|+...+-+.-+....+.+.+|..+|+..+. ..+. --..+++.|+.
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 33334444455555555555444332 22333444444444445556666666665552 0111 13346788888
Q ss_pred HHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 002549 788 LFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNT 854 (909)
Q Consensus 788 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 854 (909)
.|.+++++++|+..+++.+.. .+-|..++.+++-.|...|+++.|++.|.+.+- ++|++.....
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~ 527 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISE 527 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHH
Confidence 889999999999999998873 233567888888888888999999999999988 8887744443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-12 Score=129.53 Aligned_cols=284 Identities=14% Similarity=0.098 Sum_probs=227.1
Q ss_pred CCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHH
Q 002549 599 IEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWN 678 (909)
Q Consensus 599 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 678 (909)
..-+......-...|...+++.+...+.+..++ ..|-+...+-.-+..+.+.|+..+-..+=-++.+. .|..+..|.
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle--~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLE--KDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHh--hCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchh
Confidence 344566666777778888899999999988887 66667677766666888888888777777777776 788899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 002549 679 ALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSG 758 (909)
Q Consensus 679 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 758 (909)
+++--|...|++.+|++.|.+....++. =...|-..++.|+-.|..+.|...+..+.+.=.. ...-+.-+.--|.+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhc
Confidence 9999999999999999999999887665 3467999999999999999999998877654211 1111122444677899
Q ss_pred CHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHC--CCCCC----HHhHHHHHHHhhccCCHH
Q 002549 759 NIFEVKKIYHGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEA--GFKPD----LSIWNSMLKLYTGIEDFK 831 (909)
Q Consensus 759 ~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~ 831 (909)
+++.|.++|.+... +.| ++.+.+-++-.....+.+.+|..+|+..+.. ...+. ..+++.|+.+|++.+.++
T Consensus 395 n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 395 NLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred cHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 99999999999886 445 6778888877777889999999999998731 11111 246899999999999999
Q ss_pred HHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 002549 832 KTIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISA 893 (909)
Q Consensus 832 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 893 (909)
+|+..+++.+. +.| +..++..++-+|...|+++.|.+.|.+.. .+.|+......++..
T Consensus 473 eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 473 EAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHH
Confidence 99999999999 888 56899999999999999999999999998 789987655555543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.5e-10 Score=116.16 Aligned_cols=476 Identities=12% Similarity=0.069 Sum_probs=313.9
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH---HHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHH--
Q 002549 409 FNETNKAMMLYQEMVSNGFTPDQALYEIMIG---VLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAE-- 483 (909)
Q Consensus 409 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-- 483 (909)
.+..+++..-+......+..-+..++..+.. .|...++.+++ .++.-+.+ .++.....+++..
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~e-----------s~i~Re~~~d~ilsl 307 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEE-----------SLIPRENIEDAILSL 307 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHh-----------hccccccHHHHHHHH
Confidence 4555666666666666666656555554443 34456666665 22222221 1222222222222
Q ss_pred --HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 002549 484 --ILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGF 561 (909)
Q Consensus 484 --~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 561 (909)
.++++....+.-|+..|..+.-+....|+++.+.+.|++...... .....+..+...|...|.-..|+.+.+.....
T Consensus 308 m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 308 MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKK 386 (799)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 223333334556778888888888999999999999998876433 34667888888899999999999999988766
Q ss_pred CCcccchhhHHHHHHHHHh-cccHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHhhc----CC-------hhhHHHH
Q 002549 562 GFFSKSKTMYESLIHSCEY-NERFAEASQVFSDMRFY--NI--EPSEDLYRSMVVAYCKM----DF-------PETAHFI 625 (909)
Q Consensus 562 ~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~--~~--~p~~~~~~~l~~~~~~~----~~-------~~~a~~~ 625 (909)
..-|+++..+...-..|.. .+..++++++-.+.+.. +. ...+..+..+.-+|... .. ..++++.
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 4335555555555555554 57888888887777651 11 11223333333333221 11 3467778
Q ss_pred HHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002549 626 ADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGP 705 (909)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 705 (909)
++++.+ ++|.++.+...++--|...++++.|....++.++.+...+...|..|+.++..++++..|+.+.+..+..-+
T Consensus 467 le~av~--~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 467 LEEAVQ--FDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHHHh--cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 888877 789999999999999999999999999999999887778999999999999999999999999999988644
Q ss_pred CCCcccHHHHHHHHHhcCchhhHHHHHHHHHhC---------------------C-------CCccHHHHHHHHHHHHhc
Q 002549 706 SPTVDSINGLLQALIVDGRLNELYVVIQELQDM---------------------D-------FKISKSSILLMLDAFARS 757 (909)
Q Consensus 706 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~ 757 (909)
. |...-..-++.-...++.++++....++... | ......++..+.......
T Consensus 545 ~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 545 D-NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred h-hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 4 3332223333334456666666555444311 0 000011221111111100
Q ss_pred CCHHHHHHHHHHHHhcCCCc--h------HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCC-CHHhHHHHHHHhhccC
Q 002549 758 GNIFEVKKIYHGMKAAGYFP--T------MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIE 828 (909)
Q Consensus 758 g~~~~a~~~~~~~~~~~~~p--~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 828 (909)
+..-..... +......| + ...|....+.+.+.+..++|...+.++.. +.| ....|...+..+-..|
T Consensus 624 ~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 624 LKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred hhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHH
Confidence 000000000 11111112 1 23556667788899999999988888876 334 4466777777888889
Q ss_pred CHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHH--HHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHH
Q 002549 829 DFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLS--LMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEE 905 (909)
Q Consensus 829 ~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 905 (909)
+.++|.+.|..++. ++|+. .....++.++.+.|+..-|.+ ++..+.+.+ .-++..|-.++..+.+.|+.+.|-+
T Consensus 699 ~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 699 QLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred hhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHH
Confidence 99999999999999 99965 788899999999999888888 999988552 3358899999999999999999987
Q ss_pred hhc
Q 002549 906 LLK 908 (909)
Q Consensus 906 ~~~ 908 (909)
-|+
T Consensus 776 cf~ 778 (799)
T KOG4162|consen 776 CFQ 778 (799)
T ss_pred HHH
Confidence 664
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-16 Score=156.59 Aligned_cols=257 Identities=14% Similarity=0.139 Sum_probs=59.0
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCC
Q 002549 610 VVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGC 689 (909)
Q Consensus 610 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 689 (909)
...+...|++++|..+++.......+|++...+..++......+++++|...++++.+. .+.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-DKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc-ccccc
Confidence 44455555555555555443332223444555555555555555555555555555443 12233344444443 34455
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002549 690 YERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMD-FKISKSSILLMLDAFARSGNIFEVKKIYH 768 (909)
Q Consensus 690 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 768 (909)
+++|.++++...+.. ++...+...+..+...++++++..+++++.... .+.+...+..+...+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555544432 222334444444445555555555555443321 12233344444444444555555555555
Q ss_pred HHHhcCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC
Q 002549 769 GMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP 847 (909)
Q Consensus 769 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 847 (909)
+.++.. | +....+.++..+...|+.+++.++++...+.. +.|...+..++.+|...|+.++|+..+++..+ .+|
T Consensus 171 ~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p 245 (280)
T PF13429_consen 171 KALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNP 245 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HST
T ss_pred HHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc--ccc
Confidence 544422 3 23444444444444455444444444444321 22333344444444444555555555555444 344
Q ss_pred -ChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 002549 848 -DEDSFNTLIIMYCRDCRPEEGLSLMHEM 875 (909)
Q Consensus 848 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 875 (909)
|+....+++.++...|+.++|.++++++
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp T-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 2344444445555555555555444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-12 Score=125.82 Aligned_cols=431 Identities=11% Similarity=0.068 Sum_probs=217.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 002549 328 TYTVLIDSLGKANKISEAANVMSEMLDASVKPT-LRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPD-HLAYSVMLDI 405 (909)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 405 (909)
.+-...+-|.++|.+++|++.+...++. .|+ .+.|.....+|...|+|+++.+--.+.++ +.|+ +..+..-.++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHH
Confidence 4555666778888888888888888875 466 67777888888888888888877777666 3455 2344444555
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHH
Q 002549 406 FLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEIL 485 (909)
Q Consensus 406 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 485 (909)
+-..|++++|+.= .|..+++..+....-...+.++++.. |....
T Consensus 193 ~E~lg~~~eal~D-------------~tv~ci~~~F~n~s~~~~~eR~Lkk~-----------------------a~~ka 236 (606)
T KOG0547|consen 193 HEQLGKFDEALFD-------------VTVLCILEGFQNASIEPMAERVLKKQ-----------------------AMKKA 236 (606)
T ss_pred HHhhccHHHHHHh-------------hhHHHHhhhcccchhHHHHHHHHHHH-----------------------HHHHH
Confidence 5566666655321 22233333333332223333333221 11111
Q ss_pred HHHHH-c--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHhhcc
Q 002549 486 RSAIR-N--GIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCK-AQKLDAALEEYSNAWGF 561 (909)
Q Consensus 486 ~~~~~-~--~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 561 (909)
++-.+ . .+-|....+.+....+...- .......+...+......+-..+.. ...+..|...+.+....
T Consensus 237 ~e~~k~nr~p~lPS~~fi~syf~sF~~~~--------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~ 308 (606)
T KOG0547|consen 237 KEKLKENRPPVLPSATFIASYFGSFHADP--------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLG 308 (606)
T ss_pred HHhhcccCCCCCCcHHHHHHHHhhccccc--------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhh
Confidence 11111 1 11222222222222111000 0000000011111111111111111 11233333333222111
Q ss_pred CCcccc-----------hhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 002549 562 GFFSKS-----------KTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAE 630 (909)
Q Consensus 562 ~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 630 (909)
....++ ..+...-..-+.-.|+.-.|..-|+..+.....++.. |..+...|....+.++-...|+.+.
T Consensus 309 ~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~ 387 (606)
T KOG0547|consen 309 SESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAE 387 (606)
T ss_pred hhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHH
Confidence 000000 1111111122233466666777777666544333322 5555556666666777777777666
Q ss_pred HcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc
Q 002549 631 KKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVD 710 (909)
Q Consensus 631 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 710 (909)
. ++|.++.+|..-+.++.-.+++++|..-|++.+.. .|.+...|-.+.-+..++++++++...|+...++.|+ .+.
T Consensus 388 ~--ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L-~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~E 463 (606)
T KOG0547|consen 388 D--LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL-DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPE 463 (606)
T ss_pred h--cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-Cch
Confidence 6 66777777777777777777777777777776665 3445555555655556666777777777777666655 555
Q ss_pred cHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 002549 711 SINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFC 790 (909)
Q Consensus 711 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 790 (909)
.|+....++..++++++|.+.|+..++...+.+.... .+.+.+-..++-.-.
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v----------------------------~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV----------------------------NAAPLVHKALLVLQW 515 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc----------------------------cchhhhhhhHhhhch
Confidence 5666666666666666666666665544322111000 111111111211112
Q ss_pred ccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 002549 791 KGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 791 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
+ ++++.|+++++++.+ +.|.. ..+.+|...-.++|+.++|+++|++...
T Consensus 516 k-~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 516 K-EDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred h-hhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 566667777777665 34433 5666666666677777777777777655
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-11 Score=116.52 Aligned_cols=220 Identities=12% Similarity=0.089 Sum_probs=134.9
Q ss_pred HHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----hhcCChhhHH
Q 002549 549 DAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAY-----CKMDFPETAH 623 (909)
Q Consensus 549 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-----~~~~~~~~a~ 623 (909)
+.|++++-.+.+ .-+++...|+-.|.++++..+|..+.+++.- ..|-......++.+- .......-|.
T Consensus 271 EgALqVLP~L~~-----~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 271 EGALQVLPSLMK-----HIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred ccHHHhchHHHh-----hChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 445555544332 2344555666667777777777777666531 223333333333221 1112244566
Q ss_pred HHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002549 624 FIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRD 703 (909)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 703 (909)
+.|...-..+..-+.+.-...++..+.-..++++.+..+..+... +..|...-..++.+++..|++.+|.++|-++..-
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 666665556666677777777888888888888888888887766 4444444445788888899999999999887543
Q ss_pred CCCCCcccHH-HHHHHHHhcCchhhHHHHHHHHHhCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH
Q 002549 704 GPSPTVDSIN-GLLQALIVDGRLNELYVVIQELQDMDFKISKS-SILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYL 781 (909)
Q Consensus 704 ~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 781 (909)
..+ |..+|. .|.++|.+.++++-|..++-++. .+.+.. .+..+.+.|.+.+.+--|.+.|+.+... .|+++.
T Consensus 423 ~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEn 496 (557)
T KOG3785|consen 423 EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPEN 496 (557)
T ss_pred hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccc
Confidence 333 444554 45578888888888877665533 222222 3334556677888777777777777663 366665
Q ss_pred H
Q 002549 782 Y 782 (909)
Q Consensus 782 ~ 782 (909)
|
T Consensus 497 W 497 (557)
T KOG3785|consen 497 W 497 (557)
T ss_pred c
Confidence 5
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.3e-16 Score=156.53 Aligned_cols=256 Identities=16% Similarity=0.214 Sum_probs=114.3
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHhcC-CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 002549 644 DIIDAYGRLKLWQKAESLVGCLRQRC-APVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVD 722 (909)
Q Consensus 644 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 722 (909)
.++.++...|++++|.+++++..... .+.++..|..++..+...++++.|...+++++..++. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 56889999999999999997765543 3567788888888888899999999999999988766 66677777777 799
Q ss_pred CchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHhccCchHHHHHH
Q 002549 723 GRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAA-GYFPTMYLYRVMSGLFCKGKRVRDVEAM 801 (909)
Q Consensus 723 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 801 (909)
+++++|.+++...-+.. +++..+..++..+...|+++++..+++.+... ..+++...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998765543 45566777888999999999999999998763 2346788899999999999999999999
Q ss_pred HHHHHHCCCCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 002549 802 VSEMKEAGFKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLG 879 (909)
Q Consensus 802 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 879 (909)
++++++ ..|+ ......++..+...|+.+++.++++...+ ..| |+..+..++.+|...|++++|+.++++..+.
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~- 243 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLK--AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL- 243 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH--H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH--HCcCHHHHHHHHHHHhccccccccccccccccccc-
Confidence 999998 5675 57788999999999999999999999988 335 5577789999999999999999999999864
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 880 LEPKLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 880 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
.+.|+....++++++...|+.++|.++..
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp STT-HHHHHHHHHHHT-------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 24478888999999999999999998764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.5e-14 Score=142.66 Aligned_cols=278 Identities=13% Similarity=0.109 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHhhcCChhhH
Q 002549 547 KLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEP----SEDLYRSMVVAYCKMDFPETA 622 (909)
Q Consensus 547 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~~~~~~a 622 (909)
+..+|+..|++.... ++........+..+|...+++++|..+|+.+++. .| +.++|.+.+--+.+ +-+
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHLq~----~v~ 405 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHLQD----EVA 405 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHHHh----hHH
Confidence 456677777774443 2444455566777777777777777777777653 23 34444444432221 111
Q ss_pred HHHHH-HHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002549 623 HFIAD-QAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMM 701 (909)
Q Consensus 623 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 701 (909)
..++. .+.. ..|+.+..|..+++.|.-+++++.|++.|+++++. .|-...+|+.++.-+....++|.|...|+.++
T Consensus 406 Ls~Laq~Li~--~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 406 LSYLAQDLID--TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL-DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHHHh--hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-CCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 22211 1111 34445555555555555555555555555555543 22244455555555555555555555555554
Q ss_pred HcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-hHH
Q 002549 702 RDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFP-TMY 780 (909)
Q Consensus 702 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~ 780 (909)
..++. +.-+|.. +.-.|.+.++++.|.-.|+++.+ +.| +..
T Consensus 483 ~~~~r-hYnAwYG-----------------------------------lG~vy~Kqek~e~Ae~~fqkA~~--INP~nsv 524 (638)
T KOG1126|consen 483 GVDPR-HYNAWYG-----------------------------------LGTVYLKQEKLEFAEFHFQKAVE--INPSNSV 524 (638)
T ss_pred cCCch-hhHHHHh-----------------------------------hhhheeccchhhHHHHHHHhhhc--CCccchh
Confidence 43333 3333333 44455566666666666666655 334 444
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHCCCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHH
Q 002549 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIM 858 (909)
Q Consensus 781 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 858 (909)
....++..+.+.|+.|+|+++++++.. ..| |...-...+..+...+++++|++.++++.+ +-|+. .++..++..
T Consensus 525 i~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki 600 (638)
T KOG1126|consen 525 ILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKI 600 (638)
T ss_pred HHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHH
Confidence 555566667777777777777777765 333 444444555666677778888888888877 77754 667777778
Q ss_pred HHhcCChhhHHHHHHHHHH
Q 002549 859 YCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 859 ~~~~g~~~~A~~~~~~~~~ 877 (909)
|.+.|+.+.|+.-|-.|.+
T Consensus 601 ~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 601 YKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHccchHHHHhhHHHhc
Confidence 8888888888777777764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.1e-13 Score=140.89 Aligned_cols=283 Identities=12% Similarity=0.076 Sum_probs=176.5
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCch-HHHHHHHHhhhcCChHHH
Q 002549 581 NERFAEASQVFSDMRFYNIEPSEDLY-RSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLS-IYVDIIDAYGRLKLWQKA 658 (909)
Q Consensus 581 ~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A 658 (909)
.|+++.|.+.+....+.. +++..+ .....+....|+++.|..++.++.+ ..|+... .....+..+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHH
Confidence 688888887776654321 222332 2223344677888888888888776 4555432 222346777778888888
Q ss_pred HHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-------cHHHHHHHHHhcCchhhHHHH
Q 002549 659 ESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVD-------SINGLLQALIVDGRLNELYVV 731 (909)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~ 731 (909)
...++++.+. .|.++.+...+...|.+.|++++|.+++..+.+....+... +|..++.......+.+...++
T Consensus 173 l~~l~~~~~~-~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEV-APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888887776 46677777777888888888888888888887765542111 112222222223333444444
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCC
Q 002549 732 IQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFK 811 (909)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 811 (909)
++.+.+. .+.++.....+...+...|+.++|.+++++..+.. |+.... ++......++.+++++.++++.+. .
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~ 324 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--H 324 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhh--C
Confidence 4444322 23445566667777777777777777777777632 333222 222233457777777777777763 4
Q ss_pred CCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 812 PDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 812 p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
||. .....++..|...|++++|.+.|+++++ ..|+..++..++.++.+.|+.++|.+++++...
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444 4566667777777777777777777777 677777777777777777777777777777654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-12 Score=138.42 Aligned_cols=278 Identities=10% Similarity=0.047 Sum_probs=199.4
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCchHHHHH-HHHhhhcCChHHHHHHHHHHHhcCCCCChHhHH--HHHHHHHHcCCHHH
Q 002549 616 MDFPETAHFIADQAEKKGIPFEDLSIYVDI-IDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWN--ALIKAYAASGCYER 692 (909)
Q Consensus 616 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~ 692 (909)
.|+++.|.+......+. ++.+..+..+ +......|+++.|.+.+.++.+. +|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 58888888776655442 2234444444 34448888999999999888764 33433222 33667788889999
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccH-------HHHHHHHHHHHhcCCHHHHHH
Q 002549 693 ARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISK-------SSILLMLDAFARSGNIFEVKK 765 (909)
Q Consensus 693 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~ 765 (909)
|...++++.+..|+ +...+..+...|.+.|+|++|.+++.++.+....++. .++..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999998888776 6677788888888889999999888888877654332 123333444444455666666
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCC
Q 002549 766 IYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADL 845 (909)
Q Consensus 766 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 845 (909)
+++.+.+. .+.++.....++..+...|+.++|.+.+++..+ .+||.... ++.+....++.+++++..++.++ .
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~ 323 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--Q 323 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHh--h
Confidence 66666432 234667778888888889999999998888887 35555322 23333455888889999988888 7
Q ss_pred CCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 846 QPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 846 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
.|++ ..+..++..+.+.|+|++|.+.|+++. ...|+...+..+..++-+.|+.++|...+.
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al--~~~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL--KQRPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8865 567788888888999999999998888 457888888888888889999988887764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-12 Score=137.80 Aligned_cols=295 Identities=10% Similarity=0.021 Sum_probs=161.2
Q ss_pred HhcccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 002549 473 VKGECYDHAAEILRSAIRNGIELDH-EKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAA 551 (909)
Q Consensus 473 ~~~~~~~~a~~~~~~~~~~~~~~d~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 551 (909)
...|+++.|.+.+.+..+. .|++ ..+.....+....|+.+.|.+.+..+.+..+.....+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3456666666666555444 3433 334455677788899999999998888766665544555567778889999999
Q ss_pred HHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---hhcCChhhHHHHHHH
Q 002549 552 LEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAY---CKMDFPETAHFIADQ 628 (909)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~---~~~~~~~~a~~~~~~ 628 (909)
.+.++.+.+.. |.++..+..+...+.+.|++++|.+++..+.+.++.+..........+. ...+..+.+...+..
T Consensus 173 l~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999998876 8888888999999999999999999999998776443322211111111 111222222223332
Q ss_pred HHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 002549 629 AEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPT 708 (909)
Q Consensus 629 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 708 (909)
+... .|. . .+.++..+..++..+...|++++|.+++++.++..|...
T Consensus 251 ~~~~--~p~------------------------------~-~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 251 WWKN--QPR------------------------------H-RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred HHHH--CCH------------------------------H-HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 2221 120 0 112444444444455555555555555555554433311
Q ss_pred cccHHHHHHH--HHhcCchhhHHHHHHHHHhCCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHH
Q 002549 709 VDSINGLLQA--LIVDGRLNELYVVIQELQDMDFKISK--SSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRV 784 (909)
Q Consensus 709 ~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 784 (909)
...+. ++.. ....++.+.+.+.+++..+.. +.++ ....++...+.+.|++++|.+.|+........|+...+..
T Consensus 298 ~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~ 375 (409)
T TIGR00540 298 AISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAM 375 (409)
T ss_pred cchhH-HHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHH
Confidence 11101 1111 122234444444444444332 1122 3334455555555555555555553322223355555555
Q ss_pred HHHHHhccCchHHHHHHHHHHH
Q 002549 785 MSGLFCKGKRVRDVEAMVSEMK 806 (909)
Q Consensus 785 l~~~~~~~g~~~~A~~~~~~~~ 806 (909)
++..+.+.|+.++|.+++++.+
T Consensus 376 La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 376 AADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 5555666666666666655543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-09 Score=107.06 Aligned_cols=567 Identities=13% Similarity=0.131 Sum_probs=309.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHH
Q 002549 80 ARMLATILAVLGKANQENLAVETFMRAESAVDDT--VQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLIN 157 (909)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 157 (909)
+.+|-.-+..+.++|....-+..|+++....|.+ ...|...+......+-++-+..++.+..+. .|. .-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHH
Confidence 3466667777778888888888888877665543 357888888888888888888888887765 233 3455566
Q ss_pred HHHHcCCCCchHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCC--HHHHHH
Q 002549 158 ARLRSGAMVPNLGVDLLNEVRRS------GLRPDIITYNTIISACSRESNLE---EAMKVYGDLEAHNCQPD--LWTYNA 226 (909)
Q Consensus 158 ~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~--~~~~~~ 226 (909)
-++++++. ++|.+.+...... ..+.+-..|.-+.+...+.-+.- ....+++.+... -+| ...|++
T Consensus 178 ~L~~~d~~--~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S 253 (835)
T KOG2047|consen 178 YLAKSDRL--DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCS 253 (835)
T ss_pred HHHhccch--HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence 66777754 3455555544321 12334455666655555543332 223344444332 344 357899
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002549 227 MISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQ 306 (909)
Q Consensus 227 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 306 (909)
|.+.|.+.|.+++|.++|++.... .....-|..+.++|+.-....-+..+--.-.+.+-+.+...
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~d------------- 318 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVD------------- 318 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhh-------------
Confidence 999999999999999999988765 22455567777777654332222221100001111112222
Q ss_pred HHHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHH
Q 002549 307 HDVALQLYRDMKLSG-----------RNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKP------TLRTYSALIC 369 (909)
Q Consensus 307 ~~~A~~~~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~ 369 (909)
++-...-|+.+.... -+.++..|..-+.. ..|+..+-...+.+..+. +.| ....|..+..
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHH
Confidence 222222333332221 12344455544443 356777777777777653 122 2345677777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 002549 370 GYAKAGNRLEAEKTFYCMRRSGIRPD---HLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENK 446 (909)
Q Consensus 370 ~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 446 (909)
.|-..|+++.|+.+|++..+-..+.- ..+|......-.+..+++.|.++.+.... .|.... + .+...+.
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~-~~yd~~~ 467 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L-EYYDNSE 467 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h-hhhcCCC
Confidence 78888888888888888776433211 33455555555566677777776666543 232211 1 1111111
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 002549 447 GEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQH 526 (909)
Q Consensus 447 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 526 (909)
.-++ ++ ......|...+..-...|-++....+++.+++.
T Consensus 468 pvQ~-rl----------------------------------------hrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 468 PVQA-RL----------------------------------------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred cHHH-HH----------------------------------------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1100 00 001123333444444455666666677776665
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhc---ccHHHHHHHHHHHHhCCCCCCH
Q 002549 527 ASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYN---ERFAEASQVFSDMRFYNIEPSE 603 (909)
Q Consensus 527 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~ 603 (909)
... ++.+....+..+-...-++++.++|++-...-..|.-...|+..+.-+..+ ...+.|..+|++.++ |++|..
T Consensus 507 ria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 507 RIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred hcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 443 233344444455566677888888888766654455566777777666652 356778888888776 555543
Q ss_pred HHH--HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHh---HH
Q 002549 604 DLY--RSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKV---WN 678 (909)
Q Consensus 604 ~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~ 678 (909)
.-+ ......=-+.|-...|..+++++...-...+-..+|+..+.--...=-.....++|+++++. .| +..+ .-
T Consensus 585 aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~-Lp-~~~~r~mcl 662 (835)
T KOG2047|consen 585 AKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES-LP-DSKAREMCL 662 (835)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh-CC-hHHHHHHHH
Confidence 322 22222223456667777777776543222222444444443222222233445666666654 22 2222 22
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCcccHHHHHHHHHhcCch
Q 002549 679 ALIKAYAASGCYERARAVFNTMMRD-GPSPTVDSINGLLQALIVDGRL 725 (909)
Q Consensus 679 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 725 (909)
-....=++.|..+.|..++....+. +|..+..-|.+.=..=.++|+-
T Consensus 663 rFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 663 RFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred HHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 2334445567777777777766554 2333344455555555666663
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.1e-10 Score=106.50 Aligned_cols=457 Identities=11% Similarity=0.066 Sum_probs=252.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 002549 333 IDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNET 412 (909)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 412 (909)
+.-+....++..|..+++--...+-+-...+-..+..++.+.|++++|...+..+.+.. .|+...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34455667777777777665543322223344445566677888888888887777643 35556666666666666777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHc
Q 002549 413 NKAMMLYQEMVSNGFTPDQALY-EIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRN 491 (909)
Q Consensus 413 ~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 491 (909)
.+|..+-... |+.... ..|...-.+.|+-++...+-..+.+.. ...-+++++.-..-.+.+|+.+|++.+..
T Consensus 108 ~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 108 IEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777665543 333333 333444456666555554444433311 11112333333344455555555555432
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhH
Q 002549 492 GIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMY 571 (909)
Q Consensus 492 ~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 571 (909)
.|+-..++. -++..|.+..-++-+.+++..-... +|.++.+.
T Consensus 181 --n~ey~alNV----------------------------------y~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~ 222 (557)
T KOG3785|consen 181 --NPEYIALNV----------------------------------YMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAK 222 (557)
T ss_pred --ChhhhhhHH----------------------------------HHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHH
Confidence 122222221 2233344444444444444443332 34555555
Q ss_pred HHHHHHHHh--cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 002549 572 ESLIHSCEY--NERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAY 649 (909)
Q Consensus 572 ~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 649 (909)
|.......+ .|+.. .+-..++.+.+-..-+..-..+-+-+.-..+-|.|.+++-.+++ +. +.+...++--|
T Consensus 223 NLkacn~fRl~ngr~a--e~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~I---PEARlNL~iYy 295 (557)
T KOG3785|consen 223 NLKACNLFRLINGRTA--EDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--HI---PEARLNLIIYY 295 (557)
T ss_pred HHHHHHHhhhhccchh--HHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh--hC---hHhhhhheeee
Confidence 544444333 23322 22222222211100000000001111222345667766655554 22 34556677778
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHh
Q 002549 650 GRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASG-------CYERARAVFNTMMRDGPSPTV-DSINGLLQALIV 721 (909)
Q Consensus 650 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 721 (909)
.++++.++|..+.+++. |.++.-|-.-+-.+...| ...-|...|...-+.+..-|. .--.++..++.-
T Consensus 296 L~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred cccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 89999999988887653 223333322222233332 345566666665444433232 224456667777
Q ss_pred cCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHH
Q 002549 722 DGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAM 801 (909)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 801 (909)
.-++++.+..++.+..--...|...+ .+.++.+..|++.+|.++|-++....+.-...-...|..+|.++++...|.++
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 78889999999888766544444444 37889999999999999998887644333333345667889999999999888
Q ss_pred HHHHHHCCCCCCHHh-HHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhH
Q 002549 802 VSEMKEAGFKPDLSI-WNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSF 852 (909)
Q Consensus 802 ~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 852 (909)
+-++- .+.+..+ ...+.+.|.+.+.+=-|.+.|..+.. +.|++..|
T Consensus 451 ~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 451 MLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 76663 2334444 34455678999999999999998888 78876654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-08 Score=102.74 Aligned_cols=715 Identities=13% Similarity=0.120 Sum_probs=317.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 002549 58 VSWQRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELL 137 (909)
Q Consensus 58 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 137 (909)
+++..|-.+|- .|. . ....|.+|....++++|+.+-.-. ..|.-...-.+.++.+...|+-++|-++=
T Consensus 545 kkfk~ae~ifl---eqn-----~--te~aigmy~~lhkwde~i~lae~~--~~p~~eklk~sy~q~l~dt~qd~ka~elk 612 (1636)
T KOG3616|consen 545 KKFKEAEMIFL---EQN-----A--TEEAIGMYQELHKWDEAIALAEAK--GHPALEKLKRSYLQALMDTGQDEKAAELK 612 (1636)
T ss_pred hhhhHHHHHHH---hcc-----c--HHHHHHHHHHHHhHHHHHHHHHhc--CChHHHHHHHHHHHHHHhcCchhhhhhhc
Confidence 35666666662 221 1 124677888888888888765421 11223334455566667777777765432
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCCCCCCHHHHHHHH-------------HHHHhcCCHHH
Q 002549 138 DLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTII-------------SACSRESNLEE 204 (909)
Q Consensus 138 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-------------~~~~~~g~~~~ 204 (909)
.. +- .-...|..|.++|... .|.+... -...+..|......+. ..|.+..+++.
T Consensus 613 ----~s----dg-d~laaiqlyika~~p~--~a~~~a~--n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk 679 (1636)
T KOG3616|consen 613 ----ES----DG-DGLAAIQLYIKAGKPA--KAARAAL--NDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK 679 (1636)
T ss_pred ----cc----cC-ccHHHHHHHHHcCCch--HHHHhhc--CHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH
Confidence 11 11 1233466677777542 2222110 0001112333333333 33334444455
Q ss_pred HHHHHHHHHh---------CCCCCCHHHH-HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002549 205 AMKVYGDLEA---------HNCQPDLWTY-NAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEK 274 (909)
Q Consensus 205 A~~~~~~~~~---------~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 274 (909)
|.++|.+--. ..++..+++. ......+...|+++.|+..|-+..- .-..+.+-....++.+
T Consensus 680 ale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~k 750 (1636)
T KOG3616|consen 680 ALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKK 750 (1636)
T ss_pred HHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhh
Confidence 5554432110 0111111111 1122233334444444444322211 1122333445556666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002549 275 VKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLD 354 (909)
Q Consensus 275 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 354 (909)
|..+++.+.+.. .-.--|..+.+.|+..|+++.|.++|.+.- .++-.|.+|.+.|+++.|.++-++..
T Consensus 751 ai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~- 818 (1636)
T KOG3616|consen 751 AISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH- 818 (1636)
T ss_pred hHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc-
Confidence 666666655543 223345556666666666666666665432 23344566666666666666655543
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHH
Q 002549 355 ASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALY 434 (909)
Q Consensus 355 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 434 (909)
|.+...+.|.+-..-.-..|++.+|++++-.+. .|+. .|.+|-+.|..+..+++.++-... .-..|.
T Consensus 819 -~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~ 885 (1636)
T KOG3616|consen 819 -GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTH 885 (1636)
T ss_pred -CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHH
Confidence 223334444444444555666666665553322 1331 234455555555555444433211 011233
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH-----------------------hcCCChH-HHHHHHHhcccHHHHHHHHHHHHH
Q 002549 435 EIMIGVLGRENKGEEIRKVVRDMKE-----------------------LSGINMQ-EISSILVKGECYDHAAEILRSAIR 490 (909)
Q Consensus 435 ~~ll~~~~~~g~~~~a~~~~~~~~~-----------------------~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~ 490 (909)
..+..-|...|+...|...+-+..+ ..+.+.. .+..++.+.--.+.|..++...
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~-- 963 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKH-- 963 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhh--
Confidence 3333444444555444444322211 0111111 1222222222233333333221
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhh
Q 002549 491 NGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTM 570 (909)
Q Consensus 491 ~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 570 (909)
..+..-+...+..+.++-|.++-....+.. ...+...+...+-..|++++|-+.|-.+.+.+ .-..+
T Consensus 964 -------gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskhyveaikln---tynit 1030 (1636)
T KOG3616|consen 964 -------GLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN---TYNIT 1030 (1636)
T ss_pred -------hhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHhhHHHhhcc---cccch
Confidence 112223334455566666665554444322 23455566667778888888888888877654 22334
Q ss_pred HHHHH-----HHHHhcc-cHHHHHHHHHHHHh--------CCCCCC--HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCC
Q 002549 571 YESLI-----HSCEYNE-RFAEASQVFSDMRF--------YNIEPS--EDLYRSMVVAYCKMDFPETAHFIADQAEKKGI 634 (909)
Q Consensus 571 ~~~li-----~~~~~~g-~~~~A~~~~~~m~~--------~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 634 (909)
|...+ .-+.+.| ++++|..+|-.=.+ ...-|+ +..+..-.......|++.+|..++-++ -
T Consensus 1031 wcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllra----n 1106 (1636)
T KOG3616|consen 1031 WCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRA----N 1106 (1636)
T ss_pred hhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeec----C
Confidence 43322 2234445 56667666522110 001111 111222222233344444444433221 1
Q ss_pred CCCCchHHHHHHHHhhhcCChHHHHHHHHHHHh----------------cCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q 002549 635 PFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQ----------------RCAPVDRKVWNALIKAYAASGCYERARAVFN 698 (909)
Q Consensus 635 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 698 (909)
.|+ ...+.|...+-|.+|+++.+..+- .| .-.+..+-.-..-.-++|+|.+|...+-
T Consensus 1107 kp~------i~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~g-argvd~fvaqak~weq~gd~rkav~~~l 1179 (1636)
T KOG3616|consen 1107 KPD------IALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKG-ARGVDGFVAQAKEWEQAGDWRKAVDALL 1179 (1636)
T ss_pred CCc------hHHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHhcccHHHHHHHHh
Confidence 121 234455666667776666543221 11 0122233333444455566666666555
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002549 699 TMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISK--SSILLMLDAFARSGNIFEVKKIYHGMKAAGYF 776 (909)
Q Consensus 699 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 776 (909)
++-+ |+.--..|+..| +++|..+--++. .++. ......+-++...|.-+.|.+++-..-
T Consensus 1180 kinr-----dst~nd~l~e~~-----~~kaadl~ikfl----~~d~nme~i~aa~~al~~~~~~e~aael~l~f~----- 1240 (1636)
T KOG3616|consen 1180 KINR-----DSTDNDALAEHC-----TEKAADLSIKFL----MGDENMEVIGAAGGALDEAGCHEAAAELLLLFD----- 1240 (1636)
T ss_pred hhcc-----CCCCcHHHHHHH-----HHHHHhhhhhhc----CCccchhhHHhcchhhhcccccHHHHHHHHHhh-----
Confidence 5421 111111222111 111111111110 1111 222233333333444444433332111
Q ss_pred chHHHHHHHHHHHhccCchHHHHHH---------------HHHHHHCCCCCCH---HhHHHHHHHhhccCCHHHHHHHHH
Q 002549 777 PTMYLYRVMSGLFCKGKRVRDVEAM---------------VSEMKEAGFKPDL---SIWNSMLKLYTGIEDFKKTIQVYQ 838 (909)
Q Consensus 777 p~~~~~~~l~~~~~~~g~~~~A~~~---------------~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~ 838 (909)
.....++++++..++.+|.++ +.+.++..-+.|. +-..+.+..+..++++++|++..
T Consensus 1241 ----~~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vdviaaidl~ien~qwdk~idta- 1315 (1636)
T KOG3616|consen 1241 ----LSKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIENDQWDKAIDTA- 1315 (1636)
T ss_pred ----hHHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchhHHHHHHHHHhcccHHHHHHHH-
Confidence 111234445544444444443 3333332222232 12344556777888888887644
Q ss_pred HHHHcCCCCChhhHH-HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhh
Q 002549 839 EIQEADLQPDEDSFN-TLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDT 886 (909)
Q Consensus 839 ~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 886 (909)
.+.+++|--.-|. ..+..+.+.|+...|+.++++- |-+.|+..
T Consensus 1316 --k~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~---ga~anpan 1359 (1636)
T KOG3616|consen 1316 --KKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQH---GAPANPAN 1359 (1636)
T ss_pred --HhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHh---CCCCCccc
Confidence 4556777544443 4556777889999998888775 55444443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-09 Score=114.57 Aligned_cols=508 Identities=13% Similarity=0.107 Sum_probs=285.8
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002549 232 GRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAF---AREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHD 308 (909)
Q Consensus 232 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 308 (909)
.+.+..++++.-+......++..+..++..+..++ ...++.+++ ++-.....-+.|....+.+.+..
T Consensus 238 ~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilsl-------- 307 (799)
T KOG4162|consen 238 KKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSL-------- 307 (799)
T ss_pred cCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHH--------
Confidence 34467778888888877777777777776665443 345566655 22222222222222222221111
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002549 309 VALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMR 388 (909)
Q Consensus 309 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 388 (909)
.-.+.++....+..|...|..+.-++...|+++.+-+.|++....- .-....|..+...|...|.-..|..+++...
T Consensus 308 --m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~ 384 (799)
T KOG4162|consen 308 --MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESL 384 (799)
T ss_pred --HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhc
Confidence 0112222222334566677777777788888888888888876532 2355667777777777787777777777665
Q ss_pred HCCCCCC-HHHHHHHHHHHH-HcCCHhHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHhcC-----------CCHHHHH
Q 002549 389 RSGIRPD-HLAYSVMLDIFL-RFNETNKAMMLYQEMVSN--GF--TPDQALYEIMIGVLGRE-----------NKGEEIR 451 (909)
Q Consensus 389 ~~~~~~~-~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------g~~~~a~ 451 (909)
...-.|+ ...+-..-..|. +.+.++++..+-.+.++. +. ......+..+.-+|... ....++.
T Consensus 385 ~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 385 KKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred ccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 5432233 333333333333 346667777766666652 11 12233344444344321 1234567
Q ss_pred HHHHHHHHhcCCChHHHHH---HHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 002549 452 KVVRDMKELSGINMQEISS---ILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHAS 528 (909)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 528 (909)
+.+++..+.++.+|+.+.. -+....+.+.|.+..++.+..+...+...|..+.-.+...+++.+|..+.+..+...+
T Consensus 465 qale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 465 QALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 7788888888888877654 3455677888888888888887777888888888888888888888888887766433
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC--CHHHH
Q 002549 529 ESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEP--SEDLY 606 (909)
Q Consensus 529 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~ 606 (909)
.. ......-+..-...++.++|+.....+... |...- ...+.++-.....+...+.-.-..| ...++
T Consensus 545 ~N-~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~---------we~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 545 DN-HVLMDGKIHIELTFNDREEALDTCIHKLAL---------WEAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred hh-hhhchhhhhhhhhcccHHHHHHHHHHHHHH---------HHhhh-hHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 21 111111122222355666665554444321 11000 0001111111222222221100011 11222
Q ss_pred HHHHHHHh---hcCChhhHHHHHHHHHHcCCCCCC-------chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHh
Q 002549 607 RSMVVAYC---KMDFPETAHFIADQAEKKGIPFED-------LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKV 676 (909)
Q Consensus 607 ~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 676 (909)
..+..... +.-..+.. +-.....|.. ...+...+..+.+.++.++|...+.++.+. .+.....
T Consensus 614 r~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~ 686 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASV 686 (799)
T ss_pred HHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHH
Confidence 22222111 11111111 0001111221 233445666677777777777777777665 5666777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHH--HHHHHHhCCCCccHHHHHHHHHHH
Q 002549 677 WNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYV--VIQELQDMDFKISKSSILLMLDAF 754 (909)
Q Consensus 677 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~ 754 (909)
|+..+..+...|++++|.+.|..++..+|. ++.+...+..++.+.|+..-|.. ++..+.+.+ +.++..|..+..++
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVF 764 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 777777777778888888888887776666 66667777777777777776666 777777766 34455566677777
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 002549 755 ARSGNIFEVKKIYHGMKA 772 (909)
Q Consensus 755 ~~~g~~~~a~~~~~~~~~ 772 (909)
-+.|+.++|.+.|+...+
T Consensus 765 k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHccchHHHHHHHHHHHh
Confidence 888888888888877765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.8e-09 Score=110.11 Aligned_cols=589 Identities=12% Similarity=0.101 Sum_probs=338.7
Q ss_pred CHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-C--------CC
Q 002549 185 DIITYNTIIS--ACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESK-G--------FF 253 (909)
Q Consensus 185 ~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~--------~~ 253 (909)
|..|-..+++ .|...|+.+.|.+-.+-+. +...|..|.+.+.+..+.+-|.-.+..|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 5667777764 4778899999999888776 5678999999999999999888887777532 1 11
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002549 254 PDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLI 333 (909)
Q Consensus 254 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 333 (909)
|+ .+-..+.-.-...|.+++|..++.+-.+ |..|=..|-..|.+++|.++-+.--.-. =..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence 21 2222222234578889999999987665 3445566778899999998876433221 123555556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 002549 334 DSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETN 413 (909)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 413 (909)
.-+-..++.+.|++.|++.-. |-...+..|. .++..-+...+.+ .|...|.-....+-..|+.+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchH
Confidence 666677889999998887521 1111222221 1222222333332 24455555556666778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCC
Q 002549 414 KAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGI 493 (909)
Q Consensus 414 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 493 (909)
.|+.+|..... |-++++..|-.|+.++|.++.++-.. ....-.+++.|-..|++.+|...|.++.
T Consensus 930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esgd--~AAcYhlaR~YEn~g~v~~Av~FfTrAq---- 994 (1416)
T KOG3617|consen 930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESGD--KAACYHLARMYENDGDVVKAVKFFTRAQ---- 994 (1416)
T ss_pred HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhccc--HHHHHHHHHHhhhhHHHHHHHHHHHHHH----
Confidence 88888877653 56677778888888888877765322 1122346677778888888888887763
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHhhccCCcccchhhHH
Q 002549 494 ELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQ-KLDAALEEYSNAWGFGFFSKSKTMYE 572 (909)
Q Consensus 494 ~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ 572 (909)
++...|+.|-..+.-++-. ..+.-.++.. ....+..|-.+| ..+.|..+|.++-..+
T Consensus 995 -----afsnAIRlcKEnd~~d~L~---nlal~s~~~d----~v~aArYyEe~g~~~~~AVmLYHkAGm~~---------- 1052 (1416)
T KOG3617|consen 995 -----AFSNAIRLCKENDMKDRLA---NLALMSGGSD----LVSAARYYEELGGYAHKAVMLYHKAGMIG---------- 1052 (1416)
T ss_pred -----HHHHHHHHHHhcCHHHHHH---HHHhhcCchh----HHHHHHHHHHcchhhhHHHHHHHhhcchH----------
Confidence 4555555554444332221 1111111110 111222343444 5555555554442211
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhc
Q 002549 573 SLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRL 652 (909)
Q Consensus 573 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 652 (909)
-.+.......++ .|++++.+=+ ....|+..++.....++...++++|..++..+.+. .... -++..
T Consensus 1053 kALelAF~tqQf-~aL~lIa~DL--d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~----------~~Al-qlC~~ 1118 (1416)
T KOG3617|consen 1053 KALELAFRTQQF-SALDLIAKDL--DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF----------SGAL-QLCKN 1118 (1416)
T ss_pred HHHHHHHhhccc-HHHHHHHHhc--CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------HHHH-HHHhc
Confidence 001111111111 2333333222 23346677777777777888888888777655441 1111 12223
Q ss_pred CChHHHHHHHHHHH-hc-CCCC---ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhh
Q 002549 653 KLWQKAESLVGCLR-QR-CAPV---DRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNE 727 (909)
Q Consensus 653 ~~~~~A~~~~~~~~-~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 727 (909)
.+..--.++-+.+- .+ +.++ ...+...++..|.++|.|..|-+-|.++-. + -.-++++.+.|+.++
T Consensus 1119 ~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd---K------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1119 RNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD---K------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred CCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh---H------HHHHHHHHhcCCcce
Confidence 33333333333331 11 1222 145667788899999999999888777622 1 134566666666544
Q ss_pred HH-------------HHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCc
Q 002549 728 LY-------------VVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKR 794 (909)
Q Consensus 728 A~-------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 794 (909)
.. -.-+-++..++..++.+...++..|.+..-++.--.+|.....- ....|..+-. ..|-
T Consensus 1190 I~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydK---a~gA 1262 (1416)
T KOG3617|consen 1190 IRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDK---AMGA 1262 (1416)
T ss_pred EEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhH---HhHH
Confidence 21 11233445677888888888888888776666665566555431 1222222211 2355
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-hHHHH----------HHHhh-ccCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHH
Q 002549 795 VRDVEAMVSEMKEAGFKPDLS-IWNSM----------LKLYT-GIEDFKKTIQVYQEIQEADLQPD----EDSFNTLIIM 858 (909)
Q Consensus 795 ~~~A~~~~~~~~~~~~~p~~~-~~~~l----------~~~~~-~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~ 858 (909)
+++|-..+.++..++ +.. .++.| +.... ...|..+.+.-.+.+++.-..|| ...|..|+..
T Consensus 1263 l~eA~kCl~ka~~k~---~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~ 1339 (1416)
T KOG3617|consen 1263 LEEAAKCLLKAEQKN---MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIED 1339 (1416)
T ss_pred HHHHHHHHHHHHhhc---chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHH
Confidence 667777777766432 222 22222 22211 12366677777777777323332 2457788999
Q ss_pred HHhcCChhhHHHHHHHHHHc
Q 002549 859 YCRDCRPEEGLSLMHEMRKL 878 (909)
Q Consensus 859 ~~~~g~~~~A~~~~~~~~~~ 878 (909)
|....+|..|...+++|..+
T Consensus 1340 ~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1340 HVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHhhhhccHHHHHHHHHhhc
Confidence 99999999999999999864
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-08 Score=102.89 Aligned_cols=404 Identities=14% Similarity=0.091 Sum_probs=214.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002549 191 TIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREG 270 (909)
Q Consensus 191 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 270 (909)
+.|+.|.+.|.+..|.+....-.. ...|......+..++.+..-+++|-++|+++.. +...+..|-+..
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgd 688 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGD 688 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHccc
Confidence 345666777766666555422111 133555555566666666666666666666542 112233333333
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002549 271 NVEKVKEISENMLKMGFGKDEMTY-NTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVM 349 (909)
Q Consensus 271 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 349 (909)
-+.+|.++-+.. +|..+++. ......+...|+++.|+.-|-+... ....+.+-.....+.+|+.++
T Consensus 689 af~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~il 755 (1636)
T KOG3616|consen 689 AFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISIL 755 (1636)
T ss_pred HHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHH
Confidence 344454443321 22222222 2233445566777777766654431 222345556677888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 002549 350 SEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTP 429 (909)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 429 (909)
+.+.+... -..-|..+...|...|+++.|+++|.+.- .++..|.+|.+.|+++.|.++-++.. |-..
T Consensus 756 dniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~ 822 (1636)
T KOG3616|consen 756 DNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEA 822 (1636)
T ss_pred HHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--Cchh
Confidence 88776532 23345666778888888888888885432 34566788888888888888777665 2233
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 002549 430 DQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNV 509 (909)
Q Consensus 430 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~ 509 (909)
....|-+-..-+-+.|++.+|.+++-.+ ..|+....+|-+.|..+..+.+..+- ....-..|-..+..-+..
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti-----~~p~~aiqmydk~~~~ddmirlv~k~---h~d~l~dt~~~f~~e~e~ 894 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITI-----GEPDKAIQMYDKHGLDDDMIRLVEKH---HGDHLHDTHKHFAKELEA 894 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEc-----cCchHHHHHHHhhCcchHHHHHHHHh---ChhhhhHHHHHHHHHHHh
Confidence 4455555556677788888887766332 23444445555555555554444332 111122344455556666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHH
Q 002549 510 SGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQ 589 (909)
Q Consensus 510 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 589 (909)
.|+...|...|-.+. -+.+.+.+|...+-+++|.++-+. .| ..+.. -.+.....+.=--+.|..
T Consensus 895 ~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakt---eg--g~n~~--k~v~flwaksiggdaavk 958 (1636)
T KOG3616|consen 895 EGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKT---EG--GANAE--KHVAFLWAKSIGGDAAVK 958 (1636)
T ss_pred ccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhc---cc--cccHH--HHHHHHHHHhhCcHHHHH
Confidence 677666665543322 234445566666666665444322 11 01111 111111222212233344
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhc
Q 002549 590 VFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQR 668 (909)
Q Consensus 590 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 668 (909)
++.+. | .+...+...+..+.++-|..+-.-+.+. ....+...++..+...|++++|.+.|-++++.
T Consensus 959 llnk~---g------ll~~~id~a~d~~afd~afdlari~~k~----k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 959 LLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAKD----KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred HHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhhc----cCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 43321 0 1222233344455555555554444332 23455666677777778888887777766654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-11 Score=113.70 Aligned_cols=223 Identities=12% Similarity=0.091 Sum_probs=114.1
Q ss_pred cCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhhcCChhh
Q 002549 545 AQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPS---EDLYRSMVVAYCKMDFPET 621 (909)
Q Consensus 545 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~ 621 (909)
..+.++|+++|-.+.+.+ |.+..+-.+|...|-+.|..|.|+.+-+.+.+..--+. ......+..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 345555555555555543 44555555566666666666666666555543211111 1122334444555555555
Q ss_pred HHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC----hHhHHHHHHHHHHcCCHHHHHHHH
Q 002549 622 AHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD----RKVWNALIKAYAASGCYERARAVF 697 (909)
Q Consensus 622 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 697 (909)
|..+|..+...+ .-...+...|+..|-...+|++|+++-+++.+.+..+. ...|.-|...+....+.+.|..++
T Consensus 126 AE~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 126 AEDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 555555554321 11234555566666666666666666666655433322 234445555555556667777777
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002549 698 NTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA 772 (909)
Q Consensus 698 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 772 (909)
.++++.+++ .+..--.+.+.....|+++.|++.++...+.+...-+.+...|..+|.+.|+.++....+..+.+
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777665554 44433444455555555555555555555544433344444444444444444444444444443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-09 Score=113.41 Aligned_cols=355 Identities=9% Similarity=-0.051 Sum_probs=186.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHH
Q 002549 496 DHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLI 575 (909)
Q Consensus 496 d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 575 (909)
+..+|+.+.- ....|++.-+...|-......|. ....+..+...+.+..+++-|...|.+..... |.+...|....
T Consensus 816 n~~~WnaLGV-lsg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd--P~nl~~WlG~A 891 (1238)
T KOG1127|consen 816 NEGLWNALGV-LSGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD--PLNLVQWLGEA 891 (1238)
T ss_pred cHHHHHHHHH-hhccchhhhhhhhhhhhhhcccc-chhheeccceeEEecccHHHhhHHHHhhhhcC--chhhHHHHHHH
Confidence 4455555443 36667888887777666555444 45567777888889999999999999998876 88999998888
Q ss_pred HHHHhcccHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhh
Q 002549 576 HSCEYNERFAEASQVFSDM----RFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGR 651 (909)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 651 (909)
......|+.-+++.+|..- ...|-.|+..-+..........|+.++-+...+.+
T Consensus 892 li~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki---------------------- 949 (1238)
T KOG1127|consen 892 LIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI---------------------- 949 (1238)
T ss_pred HhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh----------------------
Confidence 8888899999999988762 12344455555555555556666655433332211
Q ss_pred cCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCcccHH----HHHHHHHhcCchh
Q 002549 652 LKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRD-GPSPTVDSIN----GLLQALIVDGRLN 726 (909)
Q Consensus 652 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~g~~~ 726 (909)
..|.-.++..... .|.+..+|...+...-+.+.+..|.+...+.+.. ..+-+...|+ ...+.++..|.++
T Consensus 950 ----~sAs~al~~yf~~-~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe 1024 (1238)
T KOG1127|consen 950 ----SSASLALSYYFLG-HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFE 1024 (1238)
T ss_pred ----hhhHHHHHHHHhc-CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchh
Confidence 1122222232222 4555666666666666666666666666554321 0111222333 2334444455555
Q ss_pred hHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCch-HHHHHHHHHHHhccCchHHHHHHHHH
Q 002549 727 ELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAA-GYFPT-MYLYRVMSGLFCKGKRVRDVEAMVSE 804 (909)
Q Consensus 727 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 804 (909)
.|..-+...-. ..+......-+.. .-.|+++++.+.|++...- .-..+ +.....++......+..+.|...+-+
T Consensus 1025 ~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe 1100 (1238)
T KOG1127|consen 1025 SAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFE 1100 (1238)
T ss_pred hHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHH
Confidence 44333322110 1111111111111 3356777777777777652 11122 23334444555566667777766666
Q ss_pred HHHCCCCCCHHhHHHHHHHhhccC---CHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 002549 805 MKEAGFKPDLSIWNSMLKLYTGIE---DFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGL 880 (909)
Q Consensus 805 ~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 880 (909)
.... -+|+..+...+...+.-.. ...-+++-+.+..+. .--. ..-...-..|.+.|+-.-..+.+++..- .
T Consensus 1101 ~~~l-s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~--e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h--~ 1175 (1238)
T KOG1127|consen 1101 VKSL-SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKL--EWFCWPPGLLKELIYALQGRSVAVKKQIQRAVH--S 1175 (1238)
T ss_pred HHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhh--HHhccChhHHHHHHHHHhhhhHHHHHHHHHHHh--c
Confidence 5542 2444444444433332222 222222333332221 0001 1111223456666776666666666653 2
Q ss_pred CC-ChhhHHHH
Q 002549 881 EP-KLDTYKSL 890 (909)
Q Consensus 881 ~p-~~~~~~~l 890 (909)
.| |+..|..|
T Consensus 1176 ~P~~~~~WslL 1186 (1238)
T KOG1127|consen 1176 NPGDPALWSLL 1186 (1238)
T ss_pred CCCChHHHHHH
Confidence 33 34455444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-11 Score=112.72 Aligned_cols=292 Identities=12% Similarity=0.081 Sum_probs=221.9
Q ss_pred HhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCC--chHHHHHHHHhhhcCChH
Q 002549 579 EYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFED--LSIYVDIIDAYGRLKLWQ 656 (909)
Q Consensus 579 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 656 (909)
.-..+.++|.++|-+|.+.. +-..++-.++.+.+.+.|..|.|+.+++.++...--+.. ..+...|+.-|...|-++
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 34578899999999998632 223344567888999999999999999998863211111 556778999999999999
Q ss_pred HHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc----HHHHHHHHHhcCchhhHHHHH
Q 002549 657 KAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDS----INGLLQALIVDGRLNELYVVI 732 (909)
Q Consensus 657 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~ 732 (909)
.|+.+|..+.+. ...-..+...|+..|....+|++|+++.++..+.++.+..+- |--+...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de-~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDE-GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcc-hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999999875 233466788899999999999999999999999876654322 333334444567889999999
Q ss_pred HHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCC
Q 002549 733 QELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP 812 (909)
Q Consensus 733 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 812 (909)
.+..+.+.+--..++ .+.+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++.+..+..+.+. .+
T Consensus 204 ~kAlqa~~~cvRAsi-~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~ 280 (389)
T COG2956 204 KKALQADKKCVRASI-ILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NT 280 (389)
T ss_pred HHHHhhCccceehhh-hhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cC
Confidence 999887754444443 477889999999999999999999775556778899999999999999999999999884 44
Q ss_pred CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH---hcCChhhHHHHHHHHHH
Q 002549 813 DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYC---RDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 877 (909)
+...-..+...--...-.+.|.....+-+. -+|+...+..++.... ..|++.+.+.++++|+.
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 444444444443444445666666666655 5999988888886554 34678888889999885
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-10 Score=110.64 Aligned_cols=269 Identities=11% Similarity=0.052 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHH
Q 002549 603 EDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIK 682 (909)
Q Consensus 603 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 682 (909)
...+..+...+...|+.++|+..|++... ++|.........+..+...|+++.-..+...+... ......-|-.-+.
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK-VKYTASHWFVHAQ 308 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-hhcchhhhhhhhh
Confidence 33344444444444444444444444433 45555555555556666666666666666655543 2223333444444
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHH
Q 002549 683 AYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFE 762 (909)
Q Consensus 683 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 762 (909)
.....++++.|+.+-++.++.++. ++..|-.-++.+.+.|+.++|.=.|...+... +.+-..|..|+..|...|+..+
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHH
Confidence 445667888888888888887666 66666666677778888888887777766543 2334667777777777777777
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHH-HHHh-ccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHH
Q 002549 763 VKKIYHGMKAAGYFPTMYLYRVMS-GLFC-KGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQE 839 (909)
Q Consensus 763 a~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 839 (909)
|.-.-+...+. ++-+..+...++ ..+. ...--++|..++++.++ +.|+- ...+.+...|...|..+.++.++++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 77666665542 112223333221 1111 22234678888888876 67776 4566667777788888888888888
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 002549 840 IQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK 883 (909)
Q Consensus 840 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 883 (909)
.+. ..||..-.+.|++.+...+.+.+|.+.|..+. .+.|+
T Consensus 464 ~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL--r~dP~ 503 (564)
T KOG1174|consen 464 HLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL--RQDPK 503 (564)
T ss_pred HHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH--hcCcc
Confidence 887 78888888888888888888888888888877 44555
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.2e-10 Score=106.50 Aligned_cols=272 Identities=11% Similarity=0.028 Sum_probs=162.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 002549 531 TPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMV 610 (909)
Q Consensus 531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 610 (909)
+..+...+...+...|+.++|+..|++....+ |.+..........+.+.|+.+.-..+...+.... .-....|-.-+
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 44455556666666666666666666665544 4344444444444555566655555554443211 01111122222
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCH
Q 002549 611 VAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCY 690 (909)
Q Consensus 611 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 690 (909)
.......+++.|..+-.+.+. .+|.+...+..-++++...|+.++|.-.|+.+... -|.+..+|.-|+.+|...|++
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchH
Confidence 223334455556555555554 55556666666666666666666666666665544 344556666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHH-hcCCHHHHHHHHHH
Q 002549 691 ERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFA-RSGNIFEVKKIYHG 769 (909)
Q Consensus 691 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~ 769 (909)
.+|.-+.+...+.-+. +..++..++ ..+|. ...--++|.+++++
T Consensus 385 kEA~~~An~~~~~~~~-sA~~LtL~g----------------------------------~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 385 KEANALANWTIRLFQN-SARSLTLFG----------------------------------TLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHHHHHHHHHhhc-chhhhhhhc----------------------------------ceeeccCchhHHHHHHHHHh
Confidence 6665555555443222 222222211 01111 11224678888888
Q ss_pred HHhcCCCch-HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC
Q 002549 770 MKAAGYFPT-MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD 848 (909)
Q Consensus 770 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 848 (909)
.+.. .|+ ....+.+...+...|+..+++.++++.+. ..||...-+.|+..+...+.+++|.+.|..++. ++|+
T Consensus 430 ~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~ 503 (564)
T KOG1174|consen 430 SLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPK 503 (564)
T ss_pred hhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCcc
Confidence 7763 343 34556778888899999999999999987 578999999999999999999999999999999 8996
Q ss_pred h
Q 002549 849 E 849 (909)
Q Consensus 849 ~ 849 (909)
+
T Consensus 504 ~ 504 (564)
T KOG1174|consen 504 S 504 (564)
T ss_pred c
Confidence 5
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-11 Score=137.75 Aligned_cols=247 Identities=11% Similarity=0.045 Sum_probs=167.2
Q ss_pred hhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhh---------cCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCC
Q 002549 619 PETAHFIADQAEKKGIPFEDLSIYVDIIDAYGR---------LKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGC 689 (909)
Q Consensus 619 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 689 (909)
.++|+..++++++ ++|++..++..++.++.. .+++++|...++++++. .|.+..++..++.++...|+
T Consensus 277 ~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l-dP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL-DHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHccC
Confidence 3566666666665 566666666666655432 23467888888888776 56677778788888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002549 690 YERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHG 769 (909)
Q Consensus 690 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 769 (909)
+++|...|+++++.+|. +...+..++.++...|++++|+..++++.+.+..+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~-~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA-AGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHhccCHHHHHHHHHH
Confidence 88888888888887766 5666777788888888888888888888776543222 222334456667888888888888
Q ss_pred HHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHc-CCCC
Q 002549 770 MKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEA-DLQP 847 (909)
Q Consensus 770 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p 847 (909)
+.+...+-++..+..+..+|...|++++|.+.++++.. ..|+. ...+.+...|...| ++|...++++.+. ...|
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 77643122455567778888888999999999888765 35554 34555555667766 4777777777652 2233
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 848 DEDSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 848 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
....+ +...|.-.|+.+.+..+ +++.+
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 33233 55666667777777666 77654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-10 Score=111.06 Aligned_cols=291 Identities=14% Similarity=0.120 Sum_probs=199.9
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC-CCchHHHHHHHHhhhcCChHHHH
Q 002549 581 NERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPF-EDLSIYVDIIDAYGRLKLWQKAE 659 (909)
Q Consensus 581 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 659 (909)
.|+|..|..+..+-.+.+..| ...|.....+-...|+.+.+-.++.++.+ ..+ +...+.......+...|+++.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae--~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAE--LAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhc--cCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 467777777666655544333 22344445556667777777777777665 222 23555666667778888888888
Q ss_pred HHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-------ccHHHHHHHHHhcCchhhHHHHH
Q 002549 660 SLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTV-------DSINGLLQALIVDGRLNELYVVI 732 (909)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~ 732 (909)
.-+.++.+. .|.++.+......+|.+.|++.....++.++.+.+.-.+. .+|..+++-....+..+.-...+
T Consensus 174 ~~v~~ll~~-~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEM-TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHh-CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 888888776 4667788888888888888888888888888887654332 34555554444444444444455
Q ss_pred HHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCC
Q 002549 733 QELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP 812 (909)
Q Consensus 733 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 812 (909)
+..... .+.++....+++.-+.+.|+.++|.++..+..+++..|+...+ -...+-++.+.-++..++..+. .+-
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~----~~~l~~~d~~~l~k~~e~~l~~-h~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRL----IPRLRPGDPEPLIKAAEKWLKQ-HPE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHH----HhhcCCCCchHHHHHHHHHHHh-CCC
Confidence 554332 2445556666777788888889998888888888777772221 2234667777777777777663 233
Q ss_pred CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 002549 813 DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK 883 (909)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 883 (909)
+.-.+.+|+..|.+++.+.+|.++++.+++ ..|+..+|..+++++.+.|++++|.+.+++....-..|+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 446788888888888999999999998888 888888899999999999999999888888775444444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-10 Score=112.38 Aligned_cols=281 Identities=12% Similarity=0.087 Sum_probs=224.6
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHH
Q 002549 616 MDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARA 695 (909)
Q Consensus 616 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 695 (909)
.|++..|.....+..+++- .....+..-+.+--..|+.+.|-.++.++.+....+...+.-.........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 5899999999988877543 34556666677788889999999999999886445556677777888999999999999
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 002549 696 VFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISK-------SSILLMLDAFARSGNIFEVKKIYH 768 (909)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~ 768 (909)
-..++.+.+|. +........++|.+.|+|.+...++.++.+.+.-.+. .++..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999998887 6677888899999999999999999999998865443 355556665555555555455555
Q ss_pred HHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC
Q 002549 769 GMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD 848 (909)
Q Consensus 769 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 848 (909)
..... ..-++....+++.-+.++|..++|.+++.+.+++...|.. .....+.+-++...=++..++.++ ..|+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~--~h~~ 326 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLK--QHPE 326 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHH--hCCC
Confidence 55432 2235667778899999999999999999999987666651 222345667888888888888887 5664
Q ss_pred -hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 849 -EDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 849 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
+..+.+|+..|.+.+.|.+|.++|+... ...|+..+|..++++|-+.|+.++|....+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 4778899999999999999999999877 568899999999999999999999987643
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-09 Score=108.04 Aligned_cols=458 Identities=13% Similarity=0.111 Sum_probs=279.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhccc
Q 002549 399 YSVMLDIFLRFNETNKAMMLYQEMVSNGFTPD-QALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGEC 477 (909)
Q Consensus 399 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (909)
|..++.+| ..+++...++..+.+++. .|+ ..+.....-.++..|+.++|....+.....+
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d---------------- 71 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND---------------- 71 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccC----------------
Confidence 44444443 456666677766666653 222 2233222224555666666666655444321
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 002549 478 YDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSN 557 (909)
Q Consensus 478 ~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 557 (909)
.-..+.|-.+.-.+....++++|++.+..++..+++ +..++..+...-.+.++++.....-..
T Consensus 72 ----------------~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~ 134 (700)
T KOG1156|consen 72 ----------------LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQ 134 (700)
T ss_pred ----------------cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 122334444444445555666666666666665554 345566666666677777777666666
Q ss_pred hhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCC-CCCCHHHHHH------HHHHHhhcCChhhHHHHHHHHH
Q 002549 558 AWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYN-IEPSEDLYRS------MVVAYCKMDFPETAHFIADQAE 630 (909)
Q Consensus 558 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~------l~~~~~~~~~~~~a~~~~~~~~ 630 (909)
..+.. |..-..|..++.+..-.|++..|..+++...+.- ..|+...+.. -.....+.|.++.|.+.+..-.
T Consensus 135 LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 135 LLQLR--PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred HHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh
Confidence 66654 6677889999999999999999999998886543 2455544432 2234566778787777665443
Q ss_pred HcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCCc
Q 002549 631 KKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERAR-AVFNTMMRDGPSPTV 709 (909)
Q Consensus 631 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~ 709 (909)
.. ..+.......-+..+.+.+++++|..++..++.. .|.+...|..+..++..-.+.-+++ .+|....+..+...
T Consensus 213 ~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r-nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e- 288 (700)
T KOG1156|consen 213 KQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER-NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE- 288 (700)
T ss_pred hH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh-CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-
Confidence 31 1223344455678899999999999999999987 4544444555555654444444555 66666655433311
Q ss_pred ccHHHHHHHHHhcCch-hhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcC----------
Q 002549 710 DSINGLLQALIVDGRL-NELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFE----VKKIYHGMKAAG---------- 774 (909)
Q Consensus 710 ~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~---------- 774 (909)
+...+-.-.....+. +..-+++..+.+.|+++-...+.++ |-.-...+- +..+.+.+...|
T Consensus 289 -~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 289 -CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred -cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 111111112222333 4445677788888877655444433 322111111 112222221111
Q ss_pred CCchHHHHH--HHHHHHhccCchHHHHHHHHHHHHCCCCCCHH-hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhh
Q 002549 775 YFPTMYLYR--VMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLS-IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDS 851 (909)
Q Consensus 775 ~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 851 (909)
-+|+...|. .++..+.+.|+++.|+..++.++. .+|..+ -|..-...+.+.|++++|...++++.+.+ .||...
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~I 441 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAI 441 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHH
Confidence 145666555 456778899999999999999996 577663 45566778899999999999999999833 334443
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh--------hHHHH--HHHHhccCCHHHHHHhh
Q 002549 852 FNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLD--------TYKSL--ISAFGKQQQLEQAEELL 907 (909)
Q Consensus 852 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--------~~~~l--~~~~~~~g~~~~A~~~~ 907 (909)
-..-+.-..+..+.++|.++.....+.|. +.. .|-.+ +.+|.++|++.+|.+=+
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 33667777889999999999999887654 211 12222 66789999999998754
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-08 Score=109.57 Aligned_cols=599 Identities=9% Similarity=-0.018 Sum_probs=324.2
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002549 236 LFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYR 315 (909)
Q Consensus 236 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 315 (909)
+...|+..|-+..+.... -...|..|...|+..-+...|.+.|+...+.+ ..+...+....+.|+...+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 356666666555554322 23456777777777667777888887777665 4566777777888888888888877733
Q ss_pred HHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002549 316 DMKLSGR-NPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRP 394 (909)
Q Consensus 316 ~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (909)
...++.. ..-...|....-.|.+.++...|+.-|+......+ -|...|..+..+|...|++..|.++|.+.... .|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 3322210 01112344444456677778888888877776543 26777888888888888888888888777663 33
Q ss_pred CHHHHHH--HHHHHHHcCCHhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChH
Q 002549 395 DHLAYSV--MLDIFLRFNETNKAMMLYQEMVSNG------FTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQ 466 (909)
Q Consensus 395 ~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 466 (909)
+. .|.. .....+..|.+.+|...+....... ..--..++..+...+.-.|-...+..++++.
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks--------- 697 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS--------- 697 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH---------
Confidence 32 2221 2223456677777777777665420 0000111111111222222222233333222
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH---HH---HH-HHHHHHhcCCCCChhhHHHHH
Q 002549 467 EISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHL---EA---CE-LIEFVKQHASESTPPLTQAFI 539 (909)
Q Consensus 467 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~---~a---~~-~~~~~~~~~~~~~~~~~~~l~ 539 (909)
++.+.-.+......+...|..+..+|.---..+ -. .. ++.+....+..++..+.
T Consensus 698 ---------------ie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l---- 758 (1238)
T KOG1127|consen 698 ---------------IESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLL---- 758 (1238)
T ss_pred ---------------HHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHH----
Confidence 222222221111111111111111110000000 00 00 00011111111111100
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHh----c---c-cHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 002549 540 IMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEY----N---E-RFAEASQVFSDMRFYNIEPSEDLYRSMVV 611 (909)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~---g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 611 (909)
--+.+.+-..... ..++.+|..++..|.+ . + +...|+..+...++. ...+..+|+.+.-
T Consensus 759 ---------~Lg~~c~~~hlsl---~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGV 825 (1238)
T KOG1127|consen 759 ---------FLGYECGIAHLSL---AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGV 825 (1238)
T ss_pred ---------HHHHHHhhHHHHH---hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHH
Confidence 0111122122211 2235667666655544 1 1 223566667665542 1234455555544
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHH
Q 002549 612 AYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYE 691 (909)
Q Consensus 612 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 691 (909)
. ...|++.-+..-|-+... ..|.....|.+++..+....+++.|...|..+... .|.+...|--........|+.-
T Consensus 826 l-sg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL-dP~nl~~WlG~Ali~eavG~ii 901 (1238)
T KOG1127|consen 826 L-SGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL-DPLNLVQWLGEALIPEAVGRII 901 (1238)
T ss_pred h-hccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhhhc-CchhhHHHHHHHHhHHHHHHHH
Confidence 3 555677766666655554 67888899999999999999999999999998876 6777788876666777789888
Q ss_pred HHHHHHHHHHHc----CCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhC---------CCCccHHHHHHHHHHHHhcC
Q 002549 692 RARAVFNTMMRD----GPSPTVDSINGLLQALIVDGRLNELYVVIQELQDM---------DFKISKSSILLMLDAFARSG 758 (909)
Q Consensus 692 ~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g 758 (909)
++..+|..--+. |--|+..-|.........+|++++-+...+.+-.. +.+.....|...+....+.+
T Consensus 902 ~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ 981 (1238)
T KOG1127|consen 902 ERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLE 981 (1238)
T ss_pred HHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHH
Confidence 888888873332 22233333433334445667666655444443322 22334556666677777888
Q ss_pred CHHHHHHHHHHHHhc-CCCchHHHHH----HHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHH
Q 002549 759 NIFEVKKIYHGMKAA-GYFPTMYLYR----VMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKT 833 (909)
Q Consensus 759 ~~~~a~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 833 (909)
.+.+|..+..+.... ...-+...|+ .....++..|.++.|...+..... ..|..+-..-+ +....|+++++
T Consensus 982 ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l-~lFfkndf~~s 1057 (1238)
T KOG1127|consen 982 EYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDL-TLFFKNDFFSS 1057 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhH-HHHHHhHHHHH
Confidence 888888887776430 1112233333 445566677777766554433211 11221111111 22557899999
Q ss_pred HHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 002549 834 IQVYQEIQEADLQPDE----DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLIS 892 (909)
Q Consensus 834 ~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 892 (909)
++.|++++. +.-+. .....++++....+..+.|...+-+.... ..|+....-++..
T Consensus 1058 l~~fe~aLs--is~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~sll~L~A 1117 (1238)
T KOG1127|consen 1058 LEFFEQALS--ISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQASSLLPLPA 1117 (1238)
T ss_pred HHHHHHHhh--hcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-CccchhhHHHHHH
Confidence 999999998 44433 23446677888888889999888777653 2444444444433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-09 Score=111.22 Aligned_cols=419 Identities=15% Similarity=0.131 Sum_probs=280.1
Q ss_pred cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 002549 475 GECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEE 554 (909)
Q Consensus 475 ~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 554 (909)
.++|...+...+.+++ ..+....++....-.+...|+-++|.......++.++. +...|..++..+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHH
Confidence 3556666666666665 33334445555555667789999999998888876554 567889899999999999999999
Q ss_pred HHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 002549 555 YSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPS-EDLYRSMVVAYCKMDFPETAHFIADQAEKKG 633 (909)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 633 (909)
|+++...+ |.|...|.-+...-.+.|+++.....-....+. .|. ...|..+..+..-.|+...|..+.+......
T Consensus 98 y~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 98 YRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999987 889999998888888889988888777776653 444 4557777888888999999999999888754
Q ss_pred C-CCCC-----chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 002549 634 I-PFED-----LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSP 707 (909)
Q Consensus 634 ~-~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 707 (909)
. .|+. ............+.|..++|.+.+...... +-.....-..-...+.+.+++++|..++...+..+|+
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd- 251 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD- 251 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-
Confidence 3 2222 122223345567778888888877765433 2222233344567788899999999999999996655
Q ss_pred CcccHHHHHHHHHhcCchhhHH-HHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 002549 708 TVDSINGLLQALIVDGRLNELY-VVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMS 786 (909)
Q Consensus 708 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 786 (909)
+...|..+..++.+--+.-+++ .+|....+.-++..... ..=++......-.+...+++..+.+.|+++-... +.
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~-Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d---l~ 327 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR-RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD---LR 327 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch-hccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh---hH
Confidence 5555555556665333334444 66666655433222111 1111222223334455667777777887653332 33
Q ss_pred HHHhccCchHHHHHHHHHHHH--CC------------CCCCHHhH--HHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-
Q 002549 787 GLFCKGKRVRDVEAMVSEMKE--AG------------FKPDLSIW--NSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE- 849 (909)
Q Consensus 787 ~~~~~~g~~~~A~~~~~~~~~--~~------------~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~- 849 (909)
..|-.-.+.+=-+++...+.. .| -+|....| ..++.-+-+.|+++.|..+++.++. -.|..
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTli 405 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLI 405 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHH
Confidence 333222222211222222211 01 14555444 4456667788999999999999999 78865
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 850 DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 850 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
.-|..-++.+...|.+++|..++++..+.. .||..+=..-+.-..+++..++|.+++.
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLS 463 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHH
Confidence 788899999999999999999999998652 4565554456666789999999998763
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.3e-12 Score=116.11 Aligned_cols=235 Identities=14% Similarity=0.131 Sum_probs=196.6
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 002549 640 SIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQAL 719 (909)
Q Consensus 640 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 719 (909)
-....++..|.+.|.+.+|.+.++..++. .+.+.+|-.|..+|.+..++..|+.++.+.++..|. ++.....+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHH
Confidence 34467889999999999999999998876 445667777889999999999999999999987665 665566778889
Q ss_pred HhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHH
Q 002549 720 IVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVE 799 (909)
Q Consensus 720 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 799 (909)
...++.++|.++++...+.. +.+...+..+...|.-.++++-|+.+|+++++.|+ .++..|+.+.-++.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhH
Confidence 99999999999999988764 33334445566678888999999999999999885 57788888988888999999999
Q ss_pred HHHHHHHHCCCCCCH--HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHH
Q 002549 800 AMVSEMKEAGFKPDL--SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 800 ~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 876 (909)
..|+.++.....|+. ..|..+.......||+..|.+.|+-++. -+|+. .++++|+-.-.+.|+.++|..++....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 999999876555665 5799999999999999999999999998 67765 899999999999999999999999887
Q ss_pred HcCCCCC
Q 002549 877 KLGLEPK 883 (909)
Q Consensus 877 ~~~~~p~ 883 (909)
...|+
T Consensus 457 --s~~P~ 461 (478)
T KOG1129|consen 457 --SVMPD 461 (478)
T ss_pred --hhCcc
Confidence 34554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.2e-11 Score=133.76 Aligned_cols=242 Identities=12% Similarity=0.022 Sum_probs=186.2
Q ss_pred CChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcC
Q 002549 653 KLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAAS---------GCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDG 723 (909)
Q Consensus 653 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 723 (909)
+.+++|...|+++++. .|.+...|..++.+|... +++++|...++++++.+|. +...+..+..++...|
T Consensus 275 ~~~~~A~~~~~~Al~l-dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNM-SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 4568999999999987 566777787777766532 4489999999999998887 7788889999999999
Q ss_pred chhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHhccCchHHHHHHH
Q 002549 724 RLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTM-YLYRVMSGLFCKGKRVRDVEAMV 802 (909)
Q Consensus 724 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 802 (909)
++++|...++++.+.+ +.+...+..+..++...|++++|...+++..+.. |+. ..+..++..+...|++++|+..+
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999999886 3445667778899999999999999999999854 432 23333444566789999999999
Q ss_pred HHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHH-cC
Q 002549 803 SEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRK-LG 879 (909)
Q Consensus 803 ~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 879 (909)
+++.+.. +|+. ..+..+..++...|++++|.+.++++.. ..|+. .....++..|+..| ++|...++++.+ ..
T Consensus 430 ~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 430 DELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 9998642 4554 4577788888899999999999999887 67765 55667777888888 488888888776 33
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHh
Q 002549 880 LEPKLDTYKSLISAFGKQQQLEQAEEL 906 (909)
Q Consensus 880 ~~p~~~~~~~l~~~~~~~g~~~~A~~~ 906 (909)
..|...-+ +...+.-.|+.+.|..+
T Consensus 505 ~~~~~~~~--~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 505 RIDNNPGL--LPLVLVAHGEAIAEKMW 529 (553)
T ss_pred HhhcCchH--HHHHHHHHhhhHHHHHH
Confidence 44443333 34445566777776654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-11 Score=113.39 Aligned_cols=229 Identities=9% Similarity=0.045 Sum_probs=159.6
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhh
Q 002549 572 ESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGR 651 (909)
Q Consensus 572 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 651 (909)
+.+..+|.+.|.+.+|...|+.-++. .|-+.||..+...|.+.++++.|+.++.+-++ ..|.+.+....+++.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHH
Confidence 67889999999999999999887764 67778888889999999999999999888776 567777777777788888
Q ss_pred cCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHH
Q 002549 652 LKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVV 731 (909)
Q Consensus 652 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 731 (909)
.++.++|.++|+.+++. .+.++.....+...|.-.|+++-|+++++++++.|.. +...|+++.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 88888888888877766 4555665555666666677788888888888877766 666777777777777777777777
Q ss_pred HHHHHhCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 002549 732 IQELQDMDFKIS--KSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKE 807 (909)
Q Consensus 732 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 807 (909)
|++....-..|+ ..+|-.+..+....||+..|.+.|+..+..+ ......+|.|.-.-.+.|+.++|..+++.+..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 777665443333 1223234444455566666666666555432 12344555555555555666666665555544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.7e-11 Score=122.64 Aligned_cols=240 Identities=17% Similarity=0.213 Sum_probs=137.6
Q ss_pred CCCchHHHHHHHHhhhcCChHHHHHHHHHHHhc-----C-CCCC-hHhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Q 002549 636 FEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQR-----C-APVD-RKVWNALIKAYAASGCYERARAVFNTMMRD----- 703 (909)
Q Consensus 636 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 703 (909)
|.-..+...++..|...|+++.|+..++.+++. | ..|. ....+.++..|...+++++|..+|++++..
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333444555666666666666666666665443 1 1122 223334667777778888888888877653
Q ss_pred CCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC-c
Q 002549 704 GPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA-----AGYF-P 777 (909)
Q Consensus 704 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-p 777 (909)
|.. +. --..++..|..+|.+.|++++|..+++...+ .|.. |
T Consensus 276 G~~-h~--------------------------------~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~ 322 (508)
T KOG1840|consen 276 GED-HP--------------------------------AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP 322 (508)
T ss_pred CCC-CH--------------------------------HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH
Confidence 111 10 0012333344444445555444444444432 1111 1
Q ss_pred hH-HHHHHHHHHHhccCchHHHHHHHHHHHH---CCCCCCH----HhHHHHHHHhhccCCHHHHHHHHHHHHHcC-----
Q 002549 778 TM-YLYRVMSGLFCKGKRVRDVEAMVSEMKE---AGFKPDL----SIWNSMLKLYTGIEDFKKTIQVYQEIQEAD----- 844 (909)
Q Consensus 778 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 844 (909)
.+ ..++.++..++..+++++|..+++...+ ..+.++. -++..|...|.+.|++++|.+++++++...
T Consensus 323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG 402 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc
Confidence 21 2344555666667777777777666543 1123333 246777777888888888888888877631
Q ss_pred -CCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHH--c---CCCCC-hhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 845 -LQPD-EDSFNTLIIMYCRDCRPEEGLSLMHEMRK--L---GLEPK-LDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 845 -~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
..+. ...+++++..|.+.+++++|.++|.+... . ...|+ ..+|..|+..|...|++++|.++.+
T Consensus 403 ~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 403 KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 1222 24667778888888888888887777654 1 12233 4567788888888888888877654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-10 Score=114.49 Aligned_cols=198 Identities=14% Similarity=0.073 Sum_probs=119.2
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQA 718 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 718 (909)
...+..++..+...|++++|.+.++++++. .|.+...+..++..+...|++++|.+.+++.++..+. +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH-DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 344455555555666666666666655544 3444555555566666666666666666666554443 33334444444
Q ss_pred HHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHhccCchHH
Q 002549 719 LIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGY-FPTMYLYRVMSGLFCKGKRVRD 797 (909)
Q Consensus 719 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~ 797 (909)
+ ...|++++|.+.+++..+... ......+..++..+...|++++
T Consensus 109 ~-----------------------------------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 109 L-----------------------------------CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred H-----------------------------------HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH
Confidence 4 444444555555444443211 1123445556667777777777
Q ss_pred HHHHHHHHHHCCCCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 002549 798 VEAMVSEMKEAGFKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCRPEEGLSLMHEM 875 (909)
Q Consensus 798 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 875 (909)
|.+.+++..+. .|+ ...+..++..+...|++++|.+.++++++ ..| +...+..++..+...|+.++|..+.+.+
T Consensus 154 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 154 AEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQ--TYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777763 343 45677777777788888888888888877 345 3456667777777788888888887776
Q ss_pred HH
Q 002549 876 RK 877 (909)
Q Consensus 876 ~~ 877 (909)
..
T Consensus 230 ~~ 231 (234)
T TIGR02521 230 QK 231 (234)
T ss_pred Hh
Confidence 53
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-10 Score=103.22 Aligned_cols=190 Identities=11% Similarity=0.069 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 002549 676 VWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFA 755 (909)
Q Consensus 676 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 755 (909)
+...|+-.|.+.|++..|..-++++++.+|+ +..+|..+.. .|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~-----------------------------------~Yq 80 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAH-----------------------------------YYQ 80 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH-----------------------------------HHH
Confidence 3445666777788888888888888776655 4444444443 444
Q ss_pred hcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHH
Q 002549 756 RSGNIFEVKKIYHGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKT 833 (909)
Q Consensus 756 ~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A 833 (909)
+.|+.+.|.+.|++.++. .| +-.+.|.....+|..|++++|.+.|+++...+..|.. .+|..++.+-.+.|+.+.|
T Consensus 81 ~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A 158 (250)
T COG3063 81 KLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQA 158 (250)
T ss_pred HcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhH
Confidence 444555555555555542 23 4456777777788888888888888888776555543 5677777777778888888
Q ss_pred HHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHh
Q 002549 834 IQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEEL 906 (909)
Q Consensus 834 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 906 (909)
.+.+++.++ +.|+. .+...+...+.+.|++-.|..+++.....+- ++....---|+.-...|+.+.|-++
T Consensus 159 ~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 159 EEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 888888888 77754 6777888888888888888888888766543 6666655556666677777666543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-08 Score=103.43 Aligned_cols=121 Identities=13% Similarity=0.069 Sum_probs=66.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002549 332 LIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNE 411 (909)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 411 (909)
=++.+...|++++|.+....++..+ +-+...+..-+-+..+.+.+++|..+.+.-... ..+..-+-.-..++.+.++
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 3455566777777777777777654 334555555556666777777777554432210 0011111111233346677
Q ss_pred HhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 002549 412 TNKAMMLYQEMVSNGFTPD-QALYEIMIGVLGRENKGEEIRKVVRDMKEL 460 (909)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 460 (909)
.++|...++. ..++ ..+...-...+.+.|++++|..+++.+.+.
T Consensus 95 ~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 95 LDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 7777776662 2222 234444455566666777776666666553
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-10 Score=111.70 Aligned_cols=197 Identities=10% Similarity=0.065 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 002549 571 YESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYG 650 (909)
Q Consensus 571 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 650 (909)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++++. ..|++...+..++..+.
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALT--LNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHH
Confidence 3333444444444444444444433321 11223333344444444444444444444444 33444555555566666
Q ss_pred hcCChHHHHHHHHHHHhcC-CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHH
Q 002549 651 RLKLWQKAESLVGCLRQRC-APVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELY 729 (909)
Q Consensus 651 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 729 (909)
..|++++|.+.++++.+.. .+.....+..++.++...|++++|...++++++..+. +...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666655431 1223445555666666667777777777776665544 4445666666666777777777
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002549 730 VVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA 772 (909)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 772 (909)
..+++..+. .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777666655 233444555566666677777777777666654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-09 Score=111.62 Aligned_cols=210 Identities=10% Similarity=0.101 Sum_probs=113.2
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhh
Q 002549 572 ESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGR 651 (909)
Q Consensus 572 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 651 (909)
+.+...|...+++++|..+|+++... ++... -.-.|.-..++..|+.+|.+
T Consensus 245 ~~~a~~y~~~~k~~eAv~ly~~AL~i----------------------------~e~~~-G~~h~~va~~l~nLa~ly~~ 295 (508)
T KOG1840|consen 245 NILALVYRSLGKYDEAVNLYEEALTI----------------------------REEVF-GEDHPAVAATLNNLAVLYYK 295 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH----------------------------HHHhc-CCCCHHHHHHHHHHHHHHhc
Confidence 34666777778888888888776531 00000 00112223344555555556
Q ss_pred cCChHHHHHHHHHHHhc-----C-CCCC-hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCcccHHHHHHHHHh
Q 002549 652 LKLWQKAESLVGCLRQR-----C-APVD-RKVWNALIKAYAASGCYERARAVFNTMMRDG---PSPTVDSINGLLQALIV 721 (909)
Q Consensus 652 ~~~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 721 (909)
.|++++|...++++.+. + .++. ...++.++..|...+++++|..++.+.++.- +.++.+
T Consensus 296 ~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~----------- 364 (508)
T KOG1840|consen 296 QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV----------- 364 (508)
T ss_pred cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch-----------
Confidence 66665555555554321 0 1122 2344556677777888888888888766532 111110
Q ss_pred cCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCc-hHHHHHHHHHHHhccCc
Q 002549 722 DGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAA------GYFP-TMYLYRVMSGLFCKGKR 794 (909)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~ 794 (909)
.-..++..+...|.+.|++++|.+++++++.. +..+ ....++.|...|.+.++
T Consensus 365 --------------------~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~ 424 (508)
T KOG1840|consen 365 --------------------NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK 424 (508)
T ss_pred --------------------HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence 01223444555555555555555555555431 1112 23456666667777777
Q ss_pred hHHHHHHHHHHHHC--CC---CCCH-HhHHHHHHHhhccCCHHHHHHHHHHHH
Q 002549 795 VRDVEAMVSEMKEA--GF---KPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQ 841 (909)
Q Consensus 795 ~~~A~~~~~~~~~~--~~---~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 841 (909)
+.+|.++|.+...- -+ .|+. .+|..|+.+|...|+++.|+++.+++.
T Consensus 425 ~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 77777777665321 12 2233 456667777777777777777766665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-07 Score=97.79 Aligned_cols=249 Identities=18% Similarity=0.218 Sum_probs=150.3
Q ss_pred CHHHHHHHH--HHHHhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHH
Q 002549 79 NARMLATIL--AVLGKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLI 156 (909)
Q Consensus 79 ~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 156 (909)
|+.+--.++ +.|...|..+.|.+..+-+. +..+|..|.+.+.+.++.+-|.-.+..|....
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aR------------ 787 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR------------ 787 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhh------------
Confidence 333333444 34677788888877665443 56789999999999999998888887776321
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 002549 157 NARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGL 236 (909)
Q Consensus 157 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 236 (909)
..+.+++..+.|-. ... ...-.....|.+++|..+|.+..+ |..|=+.|-..|.
T Consensus 788 -------------gaRAlR~a~q~~~e--~ea--kvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~ 841 (1416)
T KOG3617|consen 788 -------------GARALRRAQQNGEE--DEA--KVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGM 841 (1416)
T ss_pred -------------hHHHHHHHHhCCcc--hhh--HHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhccc
Confidence 11122333332211 111 111122344677777777776654 3344455666677
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHCC---------CCCCHHHHHHH
Q 002549 237 FEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENM----------LKMG---------FGKDEMTYNTI 297 (909)
Q Consensus 237 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----------~~~~---------~~~~~~~~~~l 297 (909)
+++|+++-+.--+-. -..||..-..-+-..++.+.|++.|++. ++.. -..|...|.-.
T Consensus 842 w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WW 918 (1416)
T KOG3617|consen 842 WSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWW 918 (1416)
T ss_pred HHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHH
Confidence 777776654322211 2234444444444556666666555432 1111 02344555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 002549 298 IHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNR 377 (909)
Q Consensus 298 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 377 (909)
..-+-..|+.|.|+.+|..... |-++++..|-+|+.++|-++-++- -|..++..+.+.|-..|++
T Consensus 919 gqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v 983 (1416)
T KOG3617|consen 919 GQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDV 983 (1416)
T ss_pred HHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHH
Confidence 5555567888888888777653 666777778888888888777663 3667777888888888888
Q ss_pred HHHHHHHHHHH
Q 002549 378 LEAEKTFYCMR 388 (909)
Q Consensus 378 ~~a~~~~~~~~ 388 (909)
.+|...|.+..
T Consensus 984 ~~Av~FfTrAq 994 (1416)
T KOG3617|consen 984 VKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHHH
Confidence 88888887654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-10 Score=114.97 Aligned_cols=259 Identities=14% Similarity=0.087 Sum_probs=188.4
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHH
Q 002549 612 AYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYE 691 (909)
Q Consensus 612 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 691 (909)
-+.+.|+..+|.-.|+.+++ -+|++..+|..|+.+....++=..|+..+++.++. .|.+..+...|+-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVk--qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L-dP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVK--QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL-DPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHh--hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhHH
Confidence 34567778888888887777 57888888888888888888888888888888776 5667777778888888888888
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002549 692 RARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMK 771 (909)
Q Consensus 692 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 771 (909)
+|+..++.-+...|+ |..+..+ ...++... .+-.++... +.+..++|-.+.
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~----------~~s~~~~~~-------------l~~i~~~fLeaa 421 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSA-GENEDFEN----------TKSFLDSSH-------------LAHIQELFLEAA 421 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhcccc-CccccccC----------CcCCCCHHH-------------HHHHHHHHHHHH
Confidence 888888887764433 2111110 00000000 001122222 223334444444
Q ss_pred -hcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh
Q 002549 772 -AAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE 849 (909)
Q Consensus 772 -~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 849 (909)
..+..+++.+...|.-.|--.|.++.|...|+.++. .+|+. .+||-|+..++...+.++|+..|+++++ +.|..
T Consensus 422 ~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~y 497 (579)
T KOG1125|consen 422 RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGY 497 (579)
T ss_pred HhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCe
Confidence 345457888899999999999999999999999998 57755 7899999999999999999999999999 99986
Q ss_pred -hhHHHHHHHHHhcCChhhHHHHHHHHHH---cC------CCCChhhHHHHHHHHhccCCHHHHHHh
Q 002549 850 -DSFNTLIIMYCRDCRPEEGLSLMHEMRK---LG------LEPKLDTYKSLISAFGKQQQLEQAEEL 906 (909)
Q Consensus 850 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~ 906 (909)
.+..+|+-+|...|.|.||.+.|-+++. .+ ..++..+|.+|=.++.-.++.|-+.+.
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 8999999999999999999999988775 21 112235788888888888887755443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-09 Score=111.09 Aligned_cols=216 Identities=12% Similarity=0.042 Sum_probs=113.1
Q ss_pred ChhhHHHHHHHHHHc-CCCCCC-chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHH
Q 002549 618 FPETAHFIADQAEKK-GIPFED-LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARA 695 (909)
Q Consensus 618 ~~~~a~~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 695 (909)
..+.++.-+.+++.. .+.|+. ...+..++..|...|++++|...|+++++. .|.++..|+.++..+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL-RPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 344444445444431 122222 455666777777777777777777777665 45566777777777777777777777
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002549 696 VFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGY 775 (909)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 775 (909)
.|+++++..|. +..+|..++.++...|++++|++.+++..+.... ..........+...++.++|...+.+.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~--~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN--DPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 77777776655 4556666666666667777777777666654321 1111111112233455666666665443321
Q ss_pred CchHHHHHHHHHHHhccCchHHHHHHHHHHHHCC-----CCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 002549 776 FPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAG-----FKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 776 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
.|+...+ .++ ....|+.+++ +.++.+.+.- ..|+ ...|..++..+...|++++|+..|+++++
T Consensus 196 ~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 196 DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1211111 111 1223443332 2333332210 0111 13455555556666666666666666665
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-08 Score=92.87 Aligned_cols=211 Identities=10% Similarity=0.008 Sum_probs=117.0
Q ss_pred HHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 002549 469 SSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKL 548 (909)
Q Consensus 469 ~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 548 (909)
..-++..+++..|+.-|..+++.. +.+-.++..-...|...|+-..|+.-++.+++..|+... ....-...+.+.|.+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~-ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMA-ARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHH-HHHHhchhhhhcccH
Confidence 344555566666666666664321 111122222334566666666666666666655444211 112223345566666
Q ss_pred HHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHH
Q 002549 549 DAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQ 628 (909)
Q Consensus 549 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 628 (909)
+.|..-|+.+.+.. |.+... ..++.+ +.+.+++ ......+..+...|+...|+.....
T Consensus 123 e~A~~DF~~vl~~~--~s~~~~----~eaqsk-------l~~~~e~---------~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 123 EQAEADFDQVLQHE--PSNGLV----LEAQSK-------LALIQEH---------WVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred HHHHHHHHHHHhcC--CCcchh----HHHHHH-------HHhHHHH---------HHHHHHHHHHhcCCchhhHHHHHHH
Confidence 66666666665543 110000 000000 0011111 0122233345556777777777777
Q ss_pred HHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002549 629 AEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPS 706 (909)
Q Consensus 629 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 706 (909)
+++ +.|.+.+.+..-+.+|...|....|+.-++.+.+. ...++....-+...+...|+.+.++...++.++.+|.
T Consensus 181 llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 181 LLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred HHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence 777 77777788888888888888888888777777665 3345666666667777778888888888888775543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-07 Score=94.59 Aligned_cols=462 Identities=18% Similarity=0.138 Sum_probs=257.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHH--HHHHH
Q 002549 364 YSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEI--MIGVL 441 (909)
Q Consensus 364 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--ll~~~ 441 (909)
..+=++.+.+.|++++|.+...++...+ +.+...+.+-+-++.+.+++++|+.+.+.-.. ..+++. +=.+|
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHH
Confidence 3344566778899999999999998865 45566777777788899999999865544221 112222 23444
Q ss_pred --hcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHH
Q 002549 442 --GRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDH-EKLLSILSSYNVSGRHLEACE 518 (909)
Q Consensus 442 --~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~-~~~~~l~~~~~~~~~~~~a~~ 518 (909)
.+.++.++|...++...+.+.......+..+.+.++|++|+.+|+.+.+.+.+.-. ..-..++.+-.. ..+.
T Consensus 88 c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~- 162 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ- 162 (652)
T ss_pred HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-
Confidence 46899999999887443322222223457788889999999999999876644322 222222221110 1111
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhc--------cCCcccch-----hhHHHHHHHHHhcccHH
Q 002549 519 LIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWG--------FGFFSKSK-----TMYESLIHSCEYNERFA 585 (909)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~-----~~~~~li~~~~~~g~~~ 585 (909)
+.+ .....+..+...+......+...|++.+|+++++.+.. .+....+. .+...|..++-..|+..
T Consensus 163 ~~q-~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQ-SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHH-hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 111 11112222333334445557778899999988888721 11000111 12233445555678888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHh---hcCChhh--HHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHH
Q 002549 586 EASQVFSDMRFYNIEPSEDLYRSMVVAYC---KMDFPET--AHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAES 660 (909)
Q Consensus 586 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~---~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 660 (909)
+|..++...+... .+|.........-+. .-.++-. ++..++.. .....+.+..
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~---------------------~~~l~~~~l~ 299 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ---------------------VFKLAEFLLS 299 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHH---------------------HHHhHHHHHH
Confidence 8888887777653 334333222222111 1111111 00000000 0001111111
Q ss_pred HHHHHHhcCCCCChHhH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH--HhcCchhhHHHHHHHHHh
Q 002549 661 LVGCLRQRCAPVDRKVW-NALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQAL--IVDGRLNELYVVIQELQD 737 (909)
Q Consensus 661 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 737 (909)
.+..-.. ..... +.++..| .+..+.+.++....-. ..|. ..+.+++... .+...+..|.+++...-+
T Consensus 300 ~Ls~~qk-----~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~ 369 (652)
T KOG2376|consen 300 KLSKKQK-----QAIYRNNALLALF--TNKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD 369 (652)
T ss_pred HHHHHHH-----HHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 1111110 11222 2333333 3445555555544422 1122 2233444332 223357778888888776
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCC
Q 002549 738 MDFKISKSSILLMLDAFARSGNIFEVKKIYH--------GMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAG 809 (909)
Q Consensus 738 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 809 (909)
.....+..+....++.....|+++.|.+++. .+.+.+..|. +...++..+.+.+..+.|.+++.++...-
T Consensus 370 ~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 370 GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 6544445666677778888999999999998 5555444444 44556777778877777777777765310
Q ss_pred --CCCCHHh----HHHHHHHhhccCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 002549 810 --FKPDLSI----WNSMLKLYTGIEDFKKTIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCRPEEGLSLMHEM 875 (909)
Q Consensus 810 --~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 875 (909)
..+.... +.-++..--+.|+-++|..+++++.+ .+| |..+...++.+|++. +++.|..+-+.+
T Consensus 448 ~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 448 RKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 1222222 33333333456999999999999999 777 558888999999976 568888776654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-09 Score=108.40 Aligned_cols=228 Identities=11% Similarity=0.036 Sum_probs=165.4
Q ss_pred CChHHHHHHHHHHHhcCC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHH
Q 002549 653 KLWQKAESLVGCLRQRCA---PVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELY 729 (909)
Q Consensus 653 ~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 729 (909)
+..+.++..+.+++.... +.....|..++..|...|++++|...|+++++..|+ +...|+.++..+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 466778888888875411 122456888899999999999999999999998887 7889999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCC
Q 002549 730 VVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAG 809 (909)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 809 (909)
..|++..+... .+..++..+..++...|++++|.+.|++..+.. |+..........+...+++++|++.+++....
T Consensus 119 ~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 119 EAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 99999998652 235667778888999999999999999999854 43322222223345678899999999876642
Q ss_pred CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHc-----CCCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 002549 810 FKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEA-----DLQPD-EDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK 883 (909)
Q Consensus 810 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 883 (909)
..|+...+ .+ .....|+..++ +.++.+.+. .+.|+ ..+|..++..+...|++++|+.+|++..+.. .||
T Consensus 195 ~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 195 LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 34443332 22 22334555443 344444421 13343 3689999999999999999999999998653 346
Q ss_pred hhhHHHH
Q 002549 884 LDTYKSL 890 (909)
Q Consensus 884 ~~~~~~l 890 (909)
.+-++..
T Consensus 270 ~~e~~~~ 276 (296)
T PRK11189 270 FVEHRYA 276 (296)
T ss_pred HHHHHHH
Confidence 5555543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-08 Score=95.01 Aligned_cols=192 Identities=18% Similarity=0.063 Sum_probs=113.8
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhhcCC
Q 002549 540 IMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYR-SMVVAYCKMDF 618 (909)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~ 618 (909)
..+...|++.+|+..|..+.+.+ |.+-.++..-...|...|+..-|+.=+...++ ++||-..-. .-...+.+.|.
T Consensus 46 k~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 33444555555555555555443 33434444444455555555555555555543 244433211 11234455566
Q ss_pred hhhHHHHHHHHHHcCCCCCC---------------chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHH
Q 002549 619 PETAHFIADQAEKKGIPFED---------------LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKA 683 (909)
Q Consensus 619 ~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 683 (909)
++.|..-|+.++.+ .|++ ...+...+..+...|+...|++++..+++. .|.|...+..-..+
T Consensus 122 le~A~~DF~~vl~~--~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 122 LEQAEADFDQVLQH--EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKC 198 (504)
T ss_pred HHHHHHHHHHHHhc--CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHH
Confidence 66666666655552 2211 111233344556677888888888888876 56677788788888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCC
Q 002549 684 YAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMD 739 (909)
Q Consensus 684 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 739 (909)
|...|++..|+.-++.+.+.... +..+..-+...+...|+.+.++....+..+.+
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLD 253 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccC
Confidence 88888888888877777665444 55556666677777888888887777777654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.3e-09 Score=109.96 Aligned_cols=286 Identities=13% Similarity=0.129 Sum_probs=195.7
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHc---
Q 002549 611 VAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAAS--- 687 (909)
Q Consensus 611 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 687 (909)
..+...|++++|+..+..... ..+|...+....+..+.+.|++++|..++..+++. .|.+..-|..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHhhhccc
Confidence 345566677777766655443 45566777788888888899999999999998887 455666666666665222
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCch-hhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 002549 688 --GCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRL-NELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVK 764 (909)
Q Consensus 688 --g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 764 (909)
.+.+.-.++++......|. ..+...+.-.+.....+ ..+..++..+...|+++ +|..+-..|....+.+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 2567778888888776654 22232232222222233 33456666777777654 3444444555555555555
Q ss_pred HHHHHHHhc----C----------CCchHHHH--HHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhcc
Q 002549 765 KIYHGMKAA----G----------YFPTMYLY--RVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGI 827 (909)
Q Consensus 765 ~~~~~~~~~----~----------~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 827 (909)
.++...... + -+|+...| .-+...|...|++++|++.++++++ .+|.. ..|..-+..+.+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHC
Confidence 555554421 1 13444444 4557788899999999999999998 57775 5677788899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhH--------HHHHHHHhccC
Q 002549 828 EDFKKTIQVYQEIQEADLQPDEDSFN-TLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTY--------KSLISAFGKQQ 898 (909)
Q Consensus 828 g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--------~~l~~~~~~~g 898 (909)
|++++|.+.++.+.+ +.+.....+ -.+.-+.+.|+.++|.+++......+..|....+ ...+.+|.+.|
T Consensus 242 G~~~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 242 GDLKEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999 888665555 4567888999999999999988765544433222 34578899999
Q ss_pred CHHHHHHhhc
Q 002549 899 QLEQAEELLK 908 (909)
Q Consensus 899 ~~~~A~~~~~ 908 (909)
++..|++.+.
T Consensus 320 ~~~~ALk~~~ 329 (517)
T PF12569_consen 320 DYGLALKRFH 329 (517)
T ss_pred hHHHHHHHHH
Confidence 9999998763
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-08 Score=101.36 Aligned_cols=384 Identities=11% Similarity=0.034 Sum_probs=253.8
Q ss_pred HHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 002549 469 SSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKL 548 (909)
Q Consensus 469 ~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 548 (909)
.+.....|+++.|+..|.+++..... +.+.|..-..+|...|++++|.+=-....+..|. -..-|...+..+.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccH
Confidence 35667889999999999999876544 8888999999999999999999888887777665 345677788888889999
Q ss_pred HHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHH--HHhCCCCCC--------HHHHHHHHHHHhhcC-
Q 002549 549 DAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSD--MRFYNIEPS--------EDLYRSMVVAYCKMD- 617 (909)
Q Consensus 549 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--m~~~~~~p~--------~~~~~~l~~~~~~~~- 617 (909)
++|+..|..-++.. |.+...++.+..++..... +.+.|.. |. .++..+ ...|..++..+.+.-
T Consensus 87 ~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~-~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYA---ADQLFTKPYFH-EKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred HHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHH---hhhhccCcHHH-HHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 99999999999886 8888899999888822111 1111110 00 000011 111222222111100
Q ss_pred ------ChhhHHHHHHHHH---------------HcCCCCC---------------------CchHHHHHHHHhhhcCCh
Q 002549 618 ------FPETAHFIADQAE---------------KKGIPFE---------------------DLSIYVDIIDAYGRLKLW 655 (909)
Q Consensus 618 ------~~~~a~~~~~~~~---------------~~~~~~~---------------------~~~~~~~l~~~~~~~~~~ 655 (909)
+...-......+. ..+..|. .......+++...+..++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 0000000000000 0011110 012244577777778888
Q ss_pred HHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH-------HHHHhcCchhhH
Q 002549 656 QKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLL-------QALIVDGRLNEL 728 (909)
Q Consensus 656 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~~~~A 728 (909)
+.|++.+...++.. .+...++....+|...|++.++...-+..++.|-. ....++.+. .+|.+.++++.+
T Consensus 241 ~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 241 ETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 88888888887762 56667777778888888888888887777776644 333333333 345556777888
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHhccCchHHHHHHHHHHHH
Q 002549 729 YVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTM-YLYRVMSGLFCKGKRVRDVEAMVSEMKE 807 (909)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 807 (909)
+..|++.......|+. ..+....+++.+..+...-. .|.. .-...-+..+.+.|++..|+..+.++++
T Consensus 318 i~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 8888776654444332 22233344444444444332 2322 1112235667789999999999999998
Q ss_pred CCCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 002549 808 AGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKL 878 (909)
Q Consensus 808 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 878 (909)
. .| |...|.....+|.+.|++..|+.-.+..++ ++|+. ..|..-+.++....+|++|.+.|++..+.
T Consensus 387 r--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 387 R--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred c--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 45 457888899999999999999999999999 88975 78888899999999999999999998754
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5e-08 Score=98.69 Aligned_cols=237 Identities=14% Similarity=0.096 Sum_probs=164.9
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHH------
Q 002549 606 YRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNA------ 679 (909)
Q Consensus 606 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------ 679 (909)
...+..+..+..+++.|++-++.++. +. .+..-+...+.+|...|.+.+......+..+.|.. ...-++.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~e--l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~ 302 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALE--LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHH
Confidence 34455555566667777777777766 34 56667777777888888888877777776665432 2222222
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 002549 680 -LIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSG 758 (909)
Q Consensus 680 -l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 758 (909)
++.+|.+.++++.|+..|.+.+...-.|+.. .+....++++.......-.+... ..-...-.+.+.+.|
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKG 372 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhcc
Confidence 3446777899999999999988765554432 22233455555444443333222 122223467788999
Q ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHH
Q 002549 759 NIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVY 837 (909)
Q Consensus 759 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 837 (909)
++..|...|.+++... +.|...|....-+|.+.|.+..|++-.+..++ ..|+. ..|.-=+.++....++++|++.|
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999865 34788999999999999999999999999888 45665 45666677777778999999999
Q ss_pred HHHHHcCCCCCh-hhHHHHHHHHHh
Q 002549 838 QEIQEADLQPDE-DSFNTLIIMYCR 861 (909)
Q Consensus 838 ~~~~~~~~~p~~-~~~~~l~~~~~~ 861 (909)
++.++ .+|+. .....+..++..
T Consensus 450 ~eale--~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 450 QEALE--LDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHh--cCchhHHHHHHHHHHHHH
Confidence 99999 88976 455566666654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.5e-09 Score=93.74 Aligned_cols=197 Identities=10% Similarity=0.042 Sum_probs=127.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 002549 641 IYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALI 720 (909)
Q Consensus 641 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 720 (909)
+...++-.|...|+...|..-++++++. .|.+..+|..+...|...|+.+.|.+.|+++++..|+ +-...|+....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~-DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH-DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 4556777888889999999999998887 6777888888899999999999999999999998777 6777888888888
Q ss_pred hcCchhhHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhccCchHHH
Q 002549 721 VDGRLNELYVVIQELQDMDFKIS-KSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDV 798 (909)
Q Consensus 721 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 798 (909)
..|++++|.+.|++......-+. ..++..+.-+..+.|+.+.|...|++.++.. | .....-.+.....+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHH
Confidence 88888888888888776543222 3455555555555566666666666555532 2 122333444444555555555
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 002549 799 EAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 799 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
...++.....+ .+...+.-..+..-...||-+.|-++=.++..
T Consensus 193 r~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555554422 23333333333344444555555444444444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-11 Score=85.27 Aligned_cols=50 Identities=34% Similarity=0.665 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHH
Q 002549 112 DTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLR 161 (909)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 161 (909)
|++.+||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57889999999999999999999999999999999999999999998874
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-08 Score=105.57 Aligned_cols=258 Identities=11% Similarity=-0.008 Sum_probs=135.7
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHh----hhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCC
Q 002549 614 CKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAY----GRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGC 689 (909)
Q Consensus 614 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 689 (909)
...|++++|...++++++ ..|++..++.. +..+ ...+....+.+.+...... .+........++..+...|+
T Consensus 54 ~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 54 WIAGDLPKALALLEQLLD--DYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHcCCHHHHHHHHHHHHH--HCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCC
Confidence 444555555555555554 34444433331 1111 1223333333333331111 22233444455566666777
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCC-ccH--HHHHHHHHHHHhcCCHHHHHHH
Q 002549 690 YERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFK-ISK--SSILLMLDAFARSGNIFEVKKI 766 (909)
Q Consensus 690 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~ 766 (909)
+++|...+++.++..|. +...+..+..++...|++++|..++++....... ++. ..+..+...+...|++++|..+
T Consensus 130 ~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 130 YDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777766554 4455566666677777777777777666554321 121 2334566667777777777777
Q ss_pred HHHHHhcCC-CchHHHH-H--HHHHHHhccCchHHHHHH--HHHHHHCCCCCCH---HhHHHHHHHhhccCCHHHHHHHH
Q 002549 767 YHGMKAAGY-FPTMYLY-R--VMSGLFCKGKRVRDVEAM--VSEMKEAGFKPDL---SIWNSMLKLYTGIEDFKKTIQVY 837 (909)
Q Consensus 767 ~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~ 837 (909)
+++...... .+..... + .+...+...|..+.+.++ +...... ..|+. ........++...|+.++|...+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 777654221 1111111 1 233334444443333333 2111111 11111 22234556677888999999999
Q ss_pred HHHHHcCCC-------C-ChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 838 QEIQEADLQ-------P-DEDSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 838 ~~~~~~~~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
+.+...... + ........+.++...|++++|.+.+.+...
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888653211 1 123344566778889999999999988875
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-08 Score=107.71 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=39.1
Q ss_pred HHHHHHhcC-ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 855 LIIMYCRDC-RPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 855 l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
.+.-+.+.. -.++|.++++-+.+.+ ..+..+|..-.+.|.+.|++=-|.+-+.
T Consensus 462 ~GekL~~t~dPLe~A~kfl~pL~~~a-~~~~et~~laFeVy~Rk~K~LLaLqaL~ 515 (517)
T PF12569_consen 462 LGEKLLKTEDPLEEAMKFLKPLLELA-PDNIETHLLAFEVYLRKGKYLLALQALK 515 (517)
T ss_pred cHHHHhcCCcHHHHHHHHHHHHHHhC-ccchhhHHHHhHHHHhcCcHHHHHHHHH
Confidence 444455554 3688999999888653 2357788888899999999988887654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-11 Score=84.00 Aligned_cols=49 Identities=47% Similarity=0.817 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002549 219 PDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFA 267 (909)
Q Consensus 219 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 267 (909)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444444444444444444444444444444444444444444444443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-08 Score=91.69 Aligned_cols=195 Identities=13% Similarity=0.104 Sum_probs=122.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 002549 189 YNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNS-LLYAFA 267 (909)
Q Consensus 189 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-ll~~~~ 267 (909)
+++.+.-+.+..++++|++++....+.. +.+....+.|..+|....++..|-+.++++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3444444566778888888888777664 346777888888888888888888888888764 333333321 123455
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002549 268 REGNVEKVKEISENMLKMGFGKDEMTYNTIIH--MYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEA 345 (909)
Q Consensus 268 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 345 (909)
+.+.+..|+.+...|.+. ++...-..-+. .....+++..+..+.++.... .+..+.+...-...+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 677788888888777642 22221111111 223557777777777766532 2333444444445677888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002549 346 ANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIR 393 (909)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (909)
++-|+...+-+.--+...|+..+.. .+.|+++.|.+...++.+.|++
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhh
Confidence 8888887765433355666665543 4567788888888888777653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.8e-09 Score=104.95 Aligned_cols=256 Identities=12% Similarity=0.133 Sum_probs=189.7
Q ss_pred HHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCC
Q 002549 575 IHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKL 654 (909)
Q Consensus 575 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 654 (909)
..-+.+.|+..+|.-.|+..++.+ +-+...|..+.......++-..|+..+.++++ ++|++..++..|+-.|...|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhh
Confidence 445678899999999999987653 33678899999999999999999999999998 999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHH
Q 002549 655 WQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQE 734 (909)
Q Consensus 655 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 734 (909)
-.+|.+++.+-+... ++-. | +..+ ...++...- + ..++...+. +..++|-.
T Consensus 369 q~~Al~~L~~Wi~~~-p~y~--~--l~~a-~~~~~~~~~---------~-s~~~~~~l~-------------~i~~~fLe 419 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNK-PKYV--H--LVSA-GENEDFENT---------K-SFLDSSHLA-------------HIQELFLE 419 (579)
T ss_pred HHHHHHHHHHHHHhC-ccch--h--cccc-CccccccCC---------c-CCCCHHHHH-------------HHHHHHHH
Confidence 999999999877652 2211 1 1100 001111100 0 111222222 22333333
Q ss_pred H-HhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCC
Q 002549 735 L-QDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP 812 (909)
Q Consensus 735 ~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 812 (909)
+ .+.+.++|+.+...|.-.|.-.|++++|...|+.++.. .| |...||-|+..++...+.++|++.|.++++ ++|
T Consensus 420 aa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP 495 (579)
T KOG1125|consen 420 AARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQP 495 (579)
T ss_pred HHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCC
Confidence 3 44555678888888888888999999999999999973 46 567999999999999999999999999998 789
Q ss_pred CH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC-----------hhhHHHHHHHHHhcCChhhH
Q 002549 813 DL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-----------EDSFNTLIIMYCRDCRPEEG 868 (909)
Q Consensus 813 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----------~~~~~~l~~~~~~~g~~~~A 868 (909)
+. .++..|+-.|...|.+++|.++|=.++. +.+. ...|-+|=.++.-.++.+-+
T Consensus 496 ~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~--mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 496 GYVRVRYNLGISCMNLGAYKEAVKHLLEALS--MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred CeeeeehhhhhhhhhhhhHHHHHHHHHHHHH--hhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 87 5677888899999999999999999887 3321 12444555555555555533
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.9e-07 Score=95.91 Aligned_cols=59 Identities=2% Similarity=0.049 Sum_probs=34.0
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHCCCC-------CC-HHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 002549 784 VMSGLFCKGKRVRDVEAMVSEMKEAGFK-------PD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 784 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
..+..+...|+.++|..+++.+...... .. ........-++...|+.++|++.+.+++.
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555566777777777777666542111 01 11122223345667888888888888776
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.4e-08 Score=97.42 Aligned_cols=240 Identities=10% Similarity=0.058 Sum_probs=164.8
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcC-ChHHHHH
Q 002549 582 ERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLK-LWQKAES 660 (909)
Q Consensus 582 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~ 660 (909)
+++.+|...|+.+.. ..+..++|+..+++++. +.|++.+++...+.++...| ++++++.
T Consensus 34 ~~~~~a~~~~ra~l~------------------~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~ 93 (320)
T PLN02789 34 PEFREAMDYFRAVYA------------------SDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELD 93 (320)
T ss_pred HHHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHH
Confidence 455666666655543 34566788888888877 78888888888888888887 5788888
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhC
Q 002549 661 LVGCLRQRCAPVDRKVWNALIKAYAASGCY--ERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDM 738 (909)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 738 (909)
.++++++. .|.+..+|+....++.+.|+. ++++.+++++++.+++ +..+|+....++...|+++++++.++++++.
T Consensus 94 ~~~~~i~~-npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 94 FAEDVAED-NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHH-CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 88888876 566777788777666666653 6778888888888877 7888888888888888888888888887776
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCC-HHhH
Q 002549 739 DFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPD-LSIW 817 (909)
Q Consensus 739 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 817 (909)
+..... .++....++.+.|... + .....+++++...+++. ..|+ ...|
T Consensus 172 d~~N~s-AW~~R~~vl~~~~~l~------------~----------------~~~~~e~el~y~~~aI~--~~P~N~SaW 220 (320)
T PLN02789 172 DVRNNS-AWNQRYFVITRSPLLG------------G----------------LEAMRDSELKYTIDAIL--ANPRNESPW 220 (320)
T ss_pred CCCchh-HHHHHHHHHHhccccc------------c----------------ccccHHHHHHHHHHHHH--hCCCCcCHH
Confidence 644332 2222222211111000 0 00113466777777776 3554 4778
Q ss_pred HHHHHHhhcc----CCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcC------------------ChhhHHHHHHH
Q 002549 818 NSMLKLYTGI----EDFKKTIQVYQEIQEADLQPD-EDSFNTLIIMYCRDC------------------RPEEGLSLMHE 874 (909)
Q Consensus 818 ~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g------------------~~~~A~~~~~~ 874 (909)
+.+...+... ++..+|.+.+.++.+ ..|+ +.++..|++.|+... ..++|.++++.
T Consensus 221 ~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 298 (320)
T PLN02789 221 RYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSE 298 (320)
T ss_pred HHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHH
Confidence 8888888773 456779999999887 6775 477888999998642 23678888888
Q ss_pred HH
Q 002549 875 MR 876 (909)
Q Consensus 875 ~~ 876 (909)
+.
T Consensus 299 l~ 300 (320)
T PLN02789 299 LE 300 (320)
T ss_pred HH
Confidence 73
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.2e-07 Score=108.21 Aligned_cols=375 Identities=10% Similarity=0.005 Sum_probs=229.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHH
Q 002549 500 LLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCE 579 (909)
Q Consensus 500 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 579 (909)
.......+...|++.+|......+... .............+...|+++.+...++.+.... ...++.........+.
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHH
Confidence 445566777888888877644433211 0011112223334556788887777776652211 1223334444555666
Q ss_pred hcccHHHHHHHHHHHHhCCCC------CCH--HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCC----chHHHHHHH
Q 002549 580 YNERFAEASQVFSDMRFYNIE------PSE--DLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFED----LSIYVDIID 647 (909)
Q Consensus 580 ~~g~~~~A~~~~~~m~~~~~~------p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~ 647 (909)
..|++++|...+......--. |.. .........+...|+++.|...++.++.. ....+ ......++.
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAE-LPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHH
Confidence 788999999888877542111 111 11222233456788999999999988763 12112 234456777
Q ss_pred HhhhcCChHHHHHHHHHHHhcCCC---C--ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC----cccHHHH
Q 002549 648 AYGRLKLWQKAESLVGCLRQRCAP---V--DRKVWNALIKAYAASGCYERARAVFNTMMRDGP---SPT----VDSINGL 715 (909)
Q Consensus 648 ~~~~~~~~~~A~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~----~~~~~~l 715 (909)
.+...|++++|...++++...... + ....+..+...+...|+++.|...+++.+.... .++ ...+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 788899999999999887643111 1 123445667778888999999999988776411 111 1223445
Q ss_pred HHHHHhcCchhhHHHHHHHHHhCC--CCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCchHH--H-H-HHH
Q 002549 716 LQALIVDGRLNELYVVIQELQDMD--FKI--SKSSILLMLDAFARSGNIFEVKKIYHGMKAA--GYFPTMY--L-Y-RVM 785 (909)
Q Consensus 716 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~--~-~-~~l 785 (909)
...+...|++++|...+.+..... ..+ ....+..+..++...|++++|...+...... ....... . . ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 566777899999998888775431 111 2334444666778889999999988888652 1111110 0 0 112
Q ss_pred HHHHhccCchHHHHHHHHHHHHCCCCCCHHh----HHHHHHHhhccCCHHHHHHHHHHHHHc----CCCCCh-hhHHHHH
Q 002549 786 SGLFCKGKRVRDVEAMVSEMKEAGFKPDLSI----WNSMLKLYTGIEDFKKTIQVYQEIQEA----DLQPDE-DSFNTLI 856 (909)
Q Consensus 786 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~ 856 (909)
...+...|+.+.|.+++....... ...... +..+..++...|+.++|...+++++.. |..++. .+...++
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPE-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCC-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 234456788888888877765321 111111 345666778889999999999988763 222222 4667788
Q ss_pred HHHHhcCChhhHHHHHHHHHHcC
Q 002549 857 IMYCRDCRPEEGLSLMHEMRKLG 879 (909)
Q Consensus 857 ~~~~~~g~~~~A~~~~~~~~~~~ 879 (909)
.++.+.|+.++|...+.++.+..
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999999999999998754
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.7e-07 Score=84.20 Aligned_cols=429 Identities=13% Similarity=0.096 Sum_probs=221.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHH-H
Q 002549 360 TLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIM-I 438 (909)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-l 438 (909)
...-+++++....+..++.+|.+++..-.+... .+....+.|..+|....++..|...++++-.. .|...-|... .
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A 85 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQA 85 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHH
Confidence 334466777777888888888888887776531 36667777888888888888888888888653 6666555432 3
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 002549 439 GVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACE 518 (909)
Q Consensus 439 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~ 518 (909)
..+.+.+.+.+|++++..+.+.+ +- -...+..-.......+++..+..
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~~----~L----------------------------~~~~lqLqaAIkYse~Dl~g~rs 133 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDNP----AL----------------------------HSRVLQLQAAIKYSEGDLPGSRS 133 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCCH----HH----------------------------HHHHHHHHHHHhcccccCcchHH
Confidence 45666777777777766554310 00 00001111112234566666666
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCC
Q 002549 519 LIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYN 598 (909)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 598 (909)
+.++... ..+........-...+.|++++|++-|+.+.+.+.+.| ..+| .+.-+..+.|+++.|++...++++.|
T Consensus 134 LveQlp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAY-niALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 134 LVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAY-NLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHhccC---CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHH-HHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 6665442 22344445555667789999999999999988774433 2333 44556667899999999999999887
Q ss_pred CCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHH
Q 002549 599 IEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWN 678 (909)
Q Consensus 599 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 678 (909)
++..++.- .|..- .|++...+ ++ -..+.... -+..+|
T Consensus 209 ~r~HPElg---------IGm~t-----------egiDvrsv------gN----------t~~lh~Sa-------l~eAfN 245 (459)
T KOG4340|consen 209 IRQHPELG---------IGMTT-----------EGIDVRSV------GN----------TLVLHQSA-------LVEAFN 245 (459)
T ss_pred hhcCCccC---------cccee-----------ccCchhcc------cc----------hHHHHHHH-------HHHHhh
Confidence 65432210 00000 00000000 00 00000000 112233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhc
Q 002549 679 ALIKAYAASGCYERARAVFNTMMRDG-PSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARS 757 (909)
Q Consensus 679 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 757 (909)
.-...+.+.|+++.|.+.+-.|--+. .+.|++|...+.. .-..+++.+..+-++-+.+.+. ....||..++-.||+.
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al-~n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL-MNMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH-hcccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhh
Confidence 33334445555555555555552211 1123344433321 1123344444444554444432 3445565666666666
Q ss_pred CCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCC---HHHH
Q 002549 758 GNIFEVKKIYHGMKAAGYF-PTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIED---FKKT 833 (909)
Q Consensus 758 g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A 833 (909)
.-++-|..++.+-....+. .+.+.|+.|=......-..++|++-++.+... +.........-+.--...++ ...|
T Consensus 324 eyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~-l~~kLRklAi~vQe~r~~~dd~a~R~a 402 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQVQEARHNRDDEAIRKA 402 (459)
T ss_pred HHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 6666555555433221111 23344443332223334455555544443220 00000000001111111111 2234
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 002549 834 IQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKL 878 (909)
Q Consensus 834 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 878 (909)
++-|++.++. --.+....++.|++..++..+.+.|+.-.+.
T Consensus 403 i~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 403 VNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 4444444441 1135556788999999999999999988754
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.9e-08 Score=97.72 Aligned_cols=254 Identities=13% Similarity=0.139 Sum_probs=163.5
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCC-CCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCC
Q 002549 611 VAYCKMDFPETAHFIADQAEKKGIPF-EDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGC 689 (909)
Q Consensus 611 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 689 (909)
..+.-.|++..++.-.+ .. ...+ ........+.+++...|+++.++ ..+... .+|.......+...+...++
T Consensus 9 rn~fy~G~Y~~~i~e~~--~~-~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS--LK-SFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHCTT-HHHHCHHHH--CH-TSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHhhhHHHHHHHhh--cc-CCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccc
Confidence 44556788888886555 22 1222 23556677888899999877654 333333 35566666666555544355
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHH-HHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002549 690 YERARAVFNTMMRDGPSPTVDSIN-GLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYH 768 (909)
Q Consensus 690 ~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 768 (909)
-+.++.-++..+.....++..++. .....+...|++++|++++..- .+.......+.++.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666665554333221222222 2234566789999999888652 344555667889999999999999999
Q ss_pred HHHhcCCCchHH---HHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCC
Q 002549 769 GMKAAGYFPTMY---LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADL 845 (909)
Q Consensus 769 ~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 845 (909)
.|.+.+ .|.. ...+.+..+.-.+.+.+|.-+|+++.+. +.++..+.+.+..++...|++++|.+.++++++ .
T Consensus 156 ~~~~~~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~ 230 (290)
T PF04733_consen 156 NMQQID--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--K 230 (290)
T ss_dssp HHHCCS--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C
T ss_pred HHHhcC--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--h
Confidence 998743 3322 1223333333345789999999998663 567778888999999999999999999999887 6
Q ss_pred CCC-hhhHHHHHHHHHhcCCh-hhHHHHHHHHHHcCCCCCh
Q 002549 846 QPD-EDSFNTLIIMYCRDCRP-EEGLSLMHEMRKLGLEPKL 884 (909)
Q Consensus 846 ~p~-~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~ 884 (909)
+|+ +.++.+++-+....|+. +.+.+++.++.+. .|+.
T Consensus 231 ~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h 269 (290)
T PF04733_consen 231 DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNH 269 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTS
T ss_pred ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCC
Confidence 774 57888898888888988 6778888888753 5553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.6e-08 Score=94.92 Aligned_cols=223 Identities=17% Similarity=0.146 Sum_probs=106.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHH
Q 002549 500 LLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCE 579 (909)
Q Consensus 500 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 579 (909)
...+.+++...|+.+.++. .+.... .+.......+...+...++-+.++..++........+.++.........+.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 3444556666666554332 222222 222222233333333334444555555444332211122222222223444
Q ss_pred hcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHh--hhc--CCh
Q 002549 580 YNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAY--GRL--KLW 655 (909)
Q Consensus 580 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~--~~~ 655 (909)
..|++++|+++++.. .+.+.....+..+.+.++++.|...++.+.+ +..+ .+...++.++ ... +++
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD--~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDED--SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCC--HHHHHHHHHHHHHHHTTTCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc--HHHHHHHHHHHHHHhCchhH
Confidence 456666666655432 2344555555666666666666666666554 2222 2233333322 222 356
Q ss_pred HHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCch-hhHHHHHHH
Q 002549 656 QKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRL-NELYVVIQE 734 (909)
Q Consensus 656 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 734 (909)
++|..+|+++.+. +++++.+.|.++.++...|++++|.+++.++++.++. +..++.+++-+....|+. +.+.+.+.+
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 6777777776554 4566666777777777777777777777776666555 555555566555555655 334455555
Q ss_pred HHhC
Q 002549 735 LQDM 738 (909)
Q Consensus 735 ~~~~ 738 (909)
+.+.
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 5543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=9e-07 Score=89.23 Aligned_cols=205 Identities=12% Similarity=0.037 Sum_probs=142.4
Q ss_pred hcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcc-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCh--h
Q 002549 544 KAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNE-RFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFP--E 620 (909)
Q Consensus 544 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~--~ 620 (909)
..+..++|+..++.+.+.. |.+..+|+....++...| ++++++..++.+.+... .+..+|..-...+.+.+.. +
T Consensus 49 ~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhH
Confidence 4456677777777777665 667777777777777766 56788888887776432 2333444333334444542 5
Q ss_pred hHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHc---CC----HHHH
Q 002549 621 TAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAAS---GC----YERA 693 (909)
Q Consensus 621 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A 693 (909)
++..+++.++. .+|.+..++...+.++...|++++|++.++++++. .+.+..+|+....++.+. |. .+++
T Consensus 126 ~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 126 KELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-DVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-CCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 67777777776 78889999999999999999999999999998887 466778888877766554 22 2567
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhc----CchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHh
Q 002549 694 RAVFNTMMRDGPSPTVDSINGLLQALIVD----GRLNELYVVIQELQDMDFKISKSSILLMLDAFAR 756 (909)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 756 (909)
++...+++...|. +..+|+.+...+... ++..+|.+.+.+..+.+ ..+...+..|++.|+.
T Consensus 203 l~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 8888888888887 788888888888763 34466777777766543 2334455566666654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.89 E-value=0.00026 Score=76.98 Aligned_cols=234 Identities=14% Similarity=0.104 Sum_probs=141.6
Q ss_pred ChhhHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 002549 44 TPTDYCFVVKWVGQVSWQRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAMMGI 123 (909)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (909)
....+..+...+..+++..|++....+..+++..+.+.++..++ +.|.|+.++|..+++......+.|..|-..+-.+
T Consensus 9 ~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~ 86 (932)
T KOG2053|consen 9 SERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNV 86 (932)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHH
Confidence 33445566677778889999999998877764444444443333 5688999999988876665556788999999999
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002549 124 YARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVP--NLGVDLLNEVRRSGLRPDIITYNTIISACSRESN 201 (909)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 201 (909)
|.+.++.++|..++++.... .|+......++.++++.+.+.. ..|.+++. .++-+.+.+-++++.....-.
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-----~~pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-----NFPKRAYYFWSVISLILQSIF 159 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCcccchHHHHHHHHHHhcc
Confidence 99999999999999998866 6777777788888888765421 11333333 233456777777776654321
Q ss_pred ----------HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHc
Q 002549 202 ----------LEEAMKVYGDLEAHN-CQPDLWTYNAMISVYGRCGLFEKAEQLF-KELESKGFFPDAVTYNSLLYAFARE 269 (909)
Q Consensus 202 ----------~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~ll~~~~~~ 269 (909)
..-|...++.+.+.+ ..-+..-.-.-...+-..|++++|++++ ...-+.-..-+...-+.-+..+...
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL 239 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 233444444444432 1111111222222334455566666655 2222222222333333444455555
Q ss_pred CCHHHHHHHHHHHHHCC
Q 002549 270 GNVEKVKEISENMLKMG 286 (909)
Q Consensus 270 g~~~~a~~~~~~~~~~~ 286 (909)
+++.+..++-.++...|
T Consensus 240 ~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKG 256 (932)
T ss_pred cChHHHHHHHHHHHHhC
Confidence 55555555555555544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.3e-07 Score=100.27 Aligned_cols=259 Identities=11% Similarity=0.157 Sum_probs=176.9
Q ss_pred cccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHH
Q 002549 564 FSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLY-RSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIY 642 (909)
Q Consensus 564 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 642 (909)
.|.+...|..|+..+...+++++|.++.+...+ ..|+...+ ......+.+.++...+..+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------- 87 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL----------------- 87 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh-----------------
Confidence 377888999999999999999999999987665 35655443 3333355555554433322
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 002549 643 VDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVD 722 (909)
Q Consensus 643 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 722 (909)
.++.......++.-...++..+.+ .+.+..++..++.+|-+.|+.++|..+++++++.++. |....|.++..|...
T Consensus 88 -~~l~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 88 -NLIDSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE 163 (906)
T ss_pred -hhhhhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh
Confidence 345555566667555555555555 3556678888999999999999999999999998877 888899999888888
Q ss_pred CchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHH
Q 002549 723 GRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMV 802 (909)
Q Consensus 723 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 802 (909)
+.++|.+++.+... .+...+++.++.++|.++.... |+ +.+.-..+.
T Consensus 164 -dL~KA~~m~~KAV~---------------~~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~ 210 (906)
T PRK14720 164 -DKEKAITYLKKAIY---------------RFIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIE 210 (906)
T ss_pred -hHHHHHHHHHHHHH---------------HHHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHH
Confidence 89999988888553 3556668888888888888743 22 122223333
Q ss_pred HHHHHC-CCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHH-cC
Q 002549 803 SEMKEA-GFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-EDSFNTLIIMYCRDCRPEEGLSLMHEMRK-LG 879 (909)
Q Consensus 803 ~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 879 (909)
+.+... ++.--..++.-+-..|...+++++++.+++.+++ +.|+ ..+...++.+|. ++|.. ...+++..+ .+
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~ 285 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSD 285 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhc
Confidence 333321 2222334556666777788899999999999999 8885 488888999887 44433 444444443 34
Q ss_pred CCCC
Q 002549 880 LEPK 883 (909)
Q Consensus 880 ~~p~ 883 (909)
+.-+
T Consensus 286 l~~~ 289 (906)
T PRK14720 286 IGNN 289 (906)
T ss_pred cccC
Confidence 4433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.1e-06 Score=98.63 Aligned_cols=371 Identities=10% Similarity=-0.060 Sum_probs=236.3
Q ss_pred HHHHhcccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 002549 470 SILVKGECYDHAAEILRSAIRNGIELDH-EKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKL 548 (909)
Q Consensus 470 ~~~~~~~~~~~a~~~~~~~~~~~~~~d~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 548 (909)
..+...|.+.+|......+ +..+.. .............|+...+...+..+.......+..........+...|++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a---~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAA---GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHCCCHHHHHHHHHHC---CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 4566778888777655443 211111 112223344556788888777776653221222233344555666788999
Q ss_pred HHHHHHHHHhhccCCc-----ccch--hhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcC
Q 002549 549 DAALEEYSNAWGFGFF-----SKSK--TMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSE----DLYRSMVVAYCKMD 617 (909)
Q Consensus 549 ~~A~~~~~~~~~~~~~-----~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~ 617 (909)
++|...+..+...-.. ++.. .....+...+...|++++|...+++....-...+. .....+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 9999999887543210 0111 11222334556789999999999987653212222 23344555677899
Q ss_pred ChhhHHHHHHHHHHcCCCCCC----chHHHHHHHHhhhcCChHHHHHHHHHHHhc----CCC---CChHhHHHHHHHHHH
Q 002549 618 FPETAHFIADQAEKKGIPFED----LSIYVDIIDAYGRLKLWQKAESLVGCLRQR----CAP---VDRKVWNALIKAYAA 686 (909)
Q Consensus 618 ~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~ 686 (909)
++++|...+.++....-...+ ......++.++...|++++|...+++..+. +.+ .....+..++..+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 999999999998763221111 345567788899999999999999987653 111 122345566777888
Q ss_pred cCCHHHHHHHHHHHHHcCCC--C--CcccHHHHHHHHHhcCchhhHHHHHHHHHhCC--CCccHH---HH-HHHHHHHHh
Q 002549 687 SGCYERARAVFNTMMRDGPS--P--TVDSINGLLQALIVDGRLNELYVVIQELQDMD--FKISKS---SI-LLMLDAFAR 756 (909)
Q Consensus 687 ~g~~~~A~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~---~~-~~l~~~~~~ 756 (909)
.|++++|...+.+....... + ....+..+...+...|++++|...+.+..... ...... .. ...+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 89999999999998764221 1 23334456677889999999999998886431 111111 11 112244556
Q ss_pred cCCHHHHHHHHHHHHhcCCCch---HHHHHHHHHHHhccCchHHHHHHHHHHHHC----CCCCCH-HhHHHHHHHhhccC
Q 002549 757 SGNIFEVKKIYHGMKAAGYFPT---MYLYRVMSGLFCKGKRVRDVEAMVSEMKEA----GFKPDL-SIWNSMLKLYTGIE 828 (909)
Q Consensus 757 ~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g 828 (909)
.|+.+.|...+........... ...+..+...+...|+.++|...++++... |..++. .+...+..++...|
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 8999999999877654221111 112456777888999999999999998652 222222 35666777889999
Q ss_pred CHHHHHHHHHHHHHc
Q 002549 829 DFKKTIQVYQEIQEA 843 (909)
Q Consensus 829 ~~~~A~~~~~~~~~~ 843 (909)
+.++|...+.++++.
T Consensus 746 ~~~~A~~~L~~Al~l 760 (903)
T PRK04841 746 RKSEAQRVLLEALKL 760 (903)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999994
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=0.00019 Score=73.35 Aligned_cols=208 Identities=9% Similarity=0.084 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc---CchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 002549 690 YERARAVFNTMMRDGPSPTVDSINGLLQALIVD---GRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKI 766 (909)
Q Consensus 690 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 766 (909)
.++|..++++.++.-...+...|..+...--.. .+.+.....++++.......-..+|..+++.-.+..-++.|+.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 566777777766543332333333333211111 13556677777777655444455666677777788889999999
Q ss_pred HHHHHhcCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 002549 767 YHGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEAD 844 (909)
Q Consensus 767 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 844 (909)
|.++.+.+..+ .+.++++++..||. ++..-|..+|+--+++ + +|. .-....+.-+...|+...|..+|++++..+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-F-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-c-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999877777 78888899887764 6678899999887763 3 454 445666777788899999999999999877
Q ss_pred CCCCh--hhHHHHHHHHHhcCChhhHHHHHHHHHHc-C--CCCChhhHHHHHHHHhccCCH
Q 002549 845 LQPDE--DSFNTLIIMYCRDCRPEEGLSLMHEMRKL-G--LEPKLDTYKSLISAFGKQQQL 900 (909)
Q Consensus 845 ~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~p~~~~~~~l~~~~~~~g~~ 900 (909)
+.|+. ..|..++.--..-|+.+-++++-+++... . ..|.-..-..+++-|.-.+.+
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence 77764 78999998888899999999998877652 2 332222333455555544443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.85 E-value=0.00036 Score=75.99 Aligned_cols=111 Identities=16% Similarity=0.178 Sum_probs=64.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002549 198 RESNLEEAMKVYGDLEAHNCQPDLWTYNAMIS--VYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKV 275 (909)
Q Consensus 198 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 275 (909)
..+++..|....+.+.+.. |+.. |...+. .+.+.|+.++|..+++.....+.. |..|...+-..|...++.++|
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 4466677777776666542 3322 112222 245667777777666666555444 666666666666677777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002549 276 KEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLY 314 (909)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 314 (909)
..+++...... |+..-...+..+|.+.+++.+-.+.-
T Consensus 97 ~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa 133 (932)
T KOG2053|consen 97 VHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAA 133 (932)
T ss_pred HHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666543 45555556666666666655543333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-06 Score=92.71 Aligned_cols=219 Identities=14% Similarity=0.065 Sum_probs=162.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 002549 531 TPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMV 610 (909)
Q Consensus 531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 610 (909)
--.....+...+.+.|-...|+..|++.. .|...|.+|...|+.++|..+..+-.+ -+|++..|..++
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 33445566777788888888888887764 477788888888888888887777765 367777777777
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCH
Q 002549 611 VAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCY 690 (909)
Q Consensus 611 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 690 (909)
+......-+++|.++.+.... .+...++....+.++++++.+.++...+. .|....+|..++.+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sa--------rA~r~~~~~~~~~~~fs~~~~hle~sl~~-nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISA--------RAQRSLALLILSNKDFSEADKHLERSLEI-NPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhH--------HHHHhhccccccchhHHHHHHHHHHHhhc-CccchhHHHhccHHHHHHhhh
Confidence 776666667777777654332 24455555566678888888888887776 566778888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002549 691 ERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGM 770 (909)
Q Consensus 691 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 770 (909)
+.|.+.|.......|. +...||++..+|.+.|+-.+|...+++..+.+ ..+...+....-...+.|.+++|.+.++++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 8888888888887666 66778888888888888888888888888777 333334444445567788888888888888
Q ss_pred Hh
Q 002549 771 KA 772 (909)
Q Consensus 771 ~~ 772 (909)
.+
T Consensus 614 l~ 615 (777)
T KOG1128|consen 614 LD 615 (777)
T ss_pred HH
Confidence 75
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.2e-07 Score=102.05 Aligned_cols=132 Identities=10% Similarity=0.057 Sum_probs=89.4
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHH-hHH
Q 002549 741 KISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPT-MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLS-IWN 818 (909)
Q Consensus 741 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~ 818 (909)
..+...+..|..+..+.|.+++|..+++.+.+. .|+ ......++..+.+.+++++|+..+++++. ..|++. ...
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 444566666777777777777777777777763 353 44555666777777777777777777776 456653 445
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 002549 819 SMLKLYTGIEDFKKTIQVYQEIQEADLQPD-EDSFNTLIIMYCRDCRPEEGLSLMHEMRKL 878 (909)
Q Consensus 819 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 878 (909)
.+..++...|++++|.++|++++. -.|+ ..++..++.++-..|+.++|...|++..+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555566666777777777777776 4665 367777777777777777777777777653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-06 Score=81.37 Aligned_cols=154 Identities=14% Similarity=0.147 Sum_probs=99.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCC
Q 002549 750 MLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIED 829 (909)
Q Consensus 750 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 829 (909)
+...+.-.|+-+.+..+..+.... .+.+......++....+.|++.+|+..+.++... -+||...|+.++.+|-+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccC
Confidence 334455555555555555554331 1234445555666777777777777777777663 24455677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 830 FKKTIQVYQEIQEADLQPD-EDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 830 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
+++|...|.++++ +.|+ +..+++++..|.-.|+++.|..++.+....+ ..|..+-..+..+....|++++|+.+..
T Consensus 150 ~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777777777777 7774 4667777777777777777777777776442 2245555667777777777777776653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-06 Score=85.94 Aligned_cols=193 Identities=13% Similarity=0.071 Sum_probs=120.4
Q ss_pred CCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCCh---HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-
Q 002549 635 PFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDR---KVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVD- 710 (909)
Q Consensus 635 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 710 (909)
.+..+..+..++..+...|++++|...++++++. .|.++ .++..++.++...|++++|...++++++..|.....
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESR-YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3455677888888888889999999988888775 34333 466778888888999999999999998876652221
Q ss_pred -cHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH-HHHHHHHHH
Q 002549 711 -SINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTM-YLYRVMSGL 788 (909)
Q Consensus 711 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~ 788 (909)
++..+..++... +...+...|+.++|.+.++++.+.. |+. ..+..+...
T Consensus 108 ~a~~~~g~~~~~~---------------------------~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~ 158 (235)
T TIGR03302 108 YAYYLRGLSNYNQ---------------------------IDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM 158 (235)
T ss_pred HHHHHHHHHHHHh---------------------------cccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH
Confidence 233344443332 0001222355666666666666532 321 111111110
Q ss_pred HhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCC
Q 002549 789 FCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD----EDSFNTLIIMYCRDCR 864 (909)
Q Consensus 789 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~ 864 (909)
+..... .. .....+...|...|++++|+..++++++ ..|+ ...+..++.++.+.|+
T Consensus 159 ----~~~~~~------~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 159 ----DYLRNR------LA--------GKELYVARFYLKRGAYVAAINRFETVVE--NYPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred ----HHHHHH------HH--------HHHHHHHHHHHHcCChHHHHHHHHHHHH--HCCCCcchHHHHHHHHHHHHHcCC
Confidence 000000 00 0112455567788888888888888887 4553 3577888888888899
Q ss_pred hhhHHHHHHHHHH
Q 002549 865 PEEGLSLMHEMRK 877 (909)
Q Consensus 865 ~~~A~~~~~~~~~ 877 (909)
+++|..+++.+..
T Consensus 219 ~~~A~~~~~~l~~ 231 (235)
T TIGR03302 219 KDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00047 Score=70.57 Aligned_cols=210 Identities=13% Similarity=0.009 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC---ChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHH
Q 002549 584 FAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMD---FPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAES 660 (909)
Q Consensus 584 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 660 (909)
.+++..+++..++.-..-+..+|..+...--..- ..+....++++++.. ..-+..-++..+++.-.+..-...|+.
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~-~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKI-EDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhh-hccCCceehhHHHHHHHHhhhHHHHHH
Confidence 4556666665554322223333333332211111 244555666666552 222335677888888889999999999
Q ss_pred HHHHHHhcCCCC-ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCC
Q 002549 661 LVGCLRQRCAPV-DRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMD 739 (909)
Q Consensus 661 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 739 (909)
+|.++.+.+..+ ++.+.++++.-|| .++.+.|.++|+--+++... +..-....+..+...++-..+..+|++....+
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 999998776555 7888888887665 68899999999999887544 44444556677788899999999999999886
Q ss_pred CCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhccCchH
Q 002549 740 FKIS--KSSILLMLDAFARSGNIFEVKKIYHGMKAA---GYFPTMYLYRVMSGLFCKGKRVR 796 (909)
Q Consensus 740 ~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~ 796 (909)
..++ ...|...++.-..-|++..+.++-++.... ...|....-..+++.|.-.+.+.
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 6555 467888888888899999998888887652 12222233344555555555444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-06 Score=90.94 Aligned_cols=218 Identities=10% Similarity=0.089 Sum_probs=118.0
Q ss_pred CchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 002549 638 DLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQ 717 (909)
Q Consensus 638 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 717 (909)
-......++..+.+.|-..+|..+++ ....|...+.+|...|+.++|..+..+-++ .+|+...|..++.
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~E---------rlemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFE---------RLEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHH---------hHHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34444555566666666666666655 245556666666666666666666665555 2345555555555
Q ss_pred HHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHH
Q 002549 718 ALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRD 797 (909)
Q Consensus 718 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 797 (909)
......-+++|.++.+..... .-..+..-....++++++.+.|+.-.+.. +--..+|-.+..+..+++++..
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHH
Confidence 555555555555555543221 11111112223456666666666555421 1134455555555556666666
Q ss_pred HHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 002549 798 VEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 798 A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 876 (909)
|.+.|..-.. ..||. ..||++-.+|.+.|+..+|...++++++.+ .-+...|-+...+..+.|.+++|.+.+.++.
T Consensus 538 av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 538 AVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 6666666555 34554 456666666666666666666666666633 1122444555555566666666666666665
Q ss_pred H
Q 002549 877 K 877 (909)
Q Consensus 877 ~ 877 (909)
.
T Consensus 615 ~ 615 (777)
T KOG1128|consen 615 D 615 (777)
T ss_pred H
Confidence 4
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.6e-06 Score=83.00 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=43.2
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChH---hHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCC
Q 002549 640 SIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRK---VWNALIKAYAAS--------GCYERARAVFNTMMRDGPS 706 (909)
Q Consensus 640 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~ 706 (909)
.++..++.++...|++++|...++++++. .|.++. .+..++.++... |++++|.+.|+++++..|.
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRL-HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN 147 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence 34566677777777777777777777665 333332 455555666544 6778888888888876555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.9e-06 Score=95.17 Aligned_cols=234 Identities=9% Similarity=0.058 Sum_probs=152.6
Q ss_pred cCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Q 002549 632 KGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDS 711 (909)
Q Consensus 632 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 711 (909)
.+.+|+...++..|+..+...+++++|..+++..++. .|.....|..++..+.+.++++++..+ .+...-+ ...-
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~-~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~--~~~~ 98 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE-HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS--QNLK 98 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc--cccc
Confidence 4467778888888888888888888888888877765 555666666666677777777777666 4433221 1112
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Q 002549 712 INGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCK 791 (909)
Q Consensus 712 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 791 (909)
|..+-..|.. +.+. ..+...+..++.+|.+.|+.++|..+|+++++.. +-|+.+.|.++..|..
T Consensus 99 ~~~ve~~~~~-------------i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 99 WAIVEHICDK-------------ILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred hhHHHHHHHH-------------HHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 2222222222 2221 2233456667788888888888888888888755 3467788888888887
Q ss_pred cCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhH-------------------
Q 002549 792 GKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSF------------------- 852 (909)
Q Consensus 792 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~------------------- 852 (909)
. ++++|++++.++... +...+++.++.++|+++++ ..|+...+
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVG 224 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHH
Confidence 7 888888888887652 4445577777777777777 66653221
Q ss_pred --HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHh----ccCCHHHHHH
Q 002549 853 --NTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFG----KQQQLEQAEE 905 (909)
Q Consensus 853 --~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~ 905 (909)
.-+-..|-..++|+++.++++...+.. ..|......+++.|. ..-+++++++
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~~kY~~~~~~ee~l~ 282 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYKEKYKDHSLLEDYLK 282 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHHHHccCcchHHHHHH
Confidence 122256667788999999999999642 224555555555543 3344555444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-06 Score=81.54 Aligned_cols=129 Identities=6% Similarity=0.065 Sum_probs=102.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHh-hccCC--HHH
Q 002549 757 SGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLY-TGIED--FKK 832 (909)
Q Consensus 757 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~-~~~g~--~~~ 832 (909)
.++.+++...++..++.. +.+...|..++..|...|++++|+..++++.+ ..|+. ..+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 556677777788777643 34788999999999999999999999999998 55654 6777777764 66676 599
Q ss_pred HHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 002549 833 TIQVYQEIQEADLQPD-EDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLIS 892 (909)
Q Consensus 833 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 892 (909)
|.++++++++ ..|+ ..++..++..+.+.|++++|+..++++.+. ..|+.. ...++.
T Consensus 129 A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~-r~~~i~ 185 (198)
T PRK10370 129 TREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVN-RTQLVE 185 (198)
T ss_pred HHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCcc-HHHHHH
Confidence 9999999999 8895 588999999999999999999999999865 244443 334443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.9e-06 Score=77.08 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=85.6
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHH
Q 002549 607 RSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAA 686 (909)
Q Consensus 607 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 686 (909)
..+-..+...|+-+....+...... ..|.+..+...++....+.|++.+|...+.++... .|+|...|+.++-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHH
Confidence 3334444445554444444443322 34445555555666666666666666666666655 45666666666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 002549 687 SGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKI 766 (909)
Q Consensus 687 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 766 (909)
.|+.+.|..-|.++++..+. +...++++.-.+.-.|+.++|..++......+.. +..+-..+.-+....|++++|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 66666666666666665554 4455566665555566666666665555544321 222233344444445555555444
Q ss_pred HH
Q 002549 767 YH 768 (909)
Q Consensus 767 ~~ 768 (909)
-.
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 43
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.63 E-value=5e-08 Score=60.43 Aligned_cols=32 Identities=31% Similarity=0.804 Sum_probs=16.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002549 181 GLRPDIITYNTIISACSRESNLEEAMKVYGDL 212 (909)
Q Consensus 181 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 212 (909)
|+.||.+|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.6e-06 Score=92.37 Aligned_cols=134 Identities=11% Similarity=0.061 Sum_probs=70.1
Q ss_pred ccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHH
Q 002549 565 SKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSE-DLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYV 643 (909)
Q Consensus 565 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 643 (909)
|.++..+-.|.....+.|++++|..+++...+ ..|+. .....+...+.+.+++++|...+++++. ..|++...+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 44455555555555555555555555555544 23432 2334444455555555555555555554 4455555555
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002549 644 DIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRD 703 (909)
Q Consensus 644 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 703 (909)
.++.++...|++++|..+|++++.. .|.+..++..++.++...|+.++|...|+++++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555555555542 3334555555555555555555555555555543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.6e-08 Score=60.21 Aligned_cols=33 Identities=39% Similarity=0.813 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 002549 216 NCQPDLWTYNAMISVYGRCGLFEKAEQLFKELE 248 (909)
Q Consensus 216 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 248 (909)
|+.||.+|||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887773
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.7e-06 Score=81.91 Aligned_cols=159 Identities=14% Similarity=0.066 Sum_probs=100.1
Q ss_pred CCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Q 002549 637 EDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLL 716 (909)
Q Consensus 637 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 716 (909)
......+..+-.+...|++++|+..++.++.. .|.|+..+......+...|+.++|.+.+++++...|. ....+-++.
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a 381 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLA 381 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHH
Confidence 34444555555566667777777777776665 5666666666677777777777777777777775554 344555666
Q ss_pred HHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchH
Q 002549 717 QALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVR 796 (909)
Q Consensus 717 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 796 (909)
.+|.+.|++.+|+.+++...... +.++.+|..|..+|...|+..++.....+ .|...|+++
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~ 442 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLE 442 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHH
Confidence 77777777777777777665543 45566666677777777766665544433 334567777
Q ss_pred HHHHHHHHHHHCCCCCCHHhH
Q 002549 797 DVEAMVSEMKEAGFKPDLSIW 817 (909)
Q Consensus 797 ~A~~~~~~~~~~~~~p~~~~~ 817 (909)
+|+..+..+.+. .+++..+|
T Consensus 443 ~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 443 QAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred HHHHHHHHHHHh-ccCCcHHH
Confidence 777777666653 34455443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-06 Score=82.70 Aligned_cols=120 Identities=11% Similarity=0.078 Sum_probs=86.9
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHH-HHcCC--HHH
Q 002549 616 MDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAY-AASGC--YER 692 (909)
Q Consensus 616 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~ 692 (909)
.++.+++...+...++ ..|++...|..++..|...|++++|...|+++.+. .|.+..++..++.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 3455666666666666 66777788888888888888888888888887776 455777777777753 56566 478
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCC
Q 002549 693 ARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMD 739 (909)
Q Consensus 693 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 739 (909)
|.++++++++.+|+ +...+..+...+.+.|++++|+..++++.+..
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 88888888887776 66777777777777777777777777776654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-06 Score=77.50 Aligned_cols=103 Identities=11% Similarity=-0.104 Sum_probs=64.6
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHc
Q 002549 608 SMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAAS 687 (909)
Q Consensus 608 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 687 (909)
.....+...|++++|...++.++. +.|++..++..++.++...|++++|...|+++.+. .|.+...+..++.++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHc
Confidence 344455556666666666666655 56666666666666666666777777766666665 455666666666666667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHH
Q 002549 688 GCYERARAVFNTMMRDGPSPTVDSING 714 (909)
Q Consensus 688 g~~~~A~~~~~~~~~~~~~~~~~~~~~ 714 (909)
|++++|...|+++++..|. +...|..
T Consensus 106 g~~~eAi~~~~~Al~~~p~-~~~~~~~ 131 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYA-DASWSEI 131 (144)
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 7777777777776665444 3333433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-06 Score=76.93 Aligned_cols=108 Identities=15% Similarity=0.000 Sum_probs=85.5
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002549 625 IADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDG 704 (909)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 704 (909)
+++++++ ++|++ +..++..+...|++++|...|+.++.. .|.+...|..++.++...|++++|...|+++++.+
T Consensus 15 ~~~~al~--~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 15 ILKQLLS--VDPET---VYASGYASWQEGDYSRAVIDFSWLVMA-QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH--cCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4444444 44543 456788888888999999998888876 56678888888888888899999999999988877
Q ss_pred CCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCC
Q 002549 705 PSPTVDSINGLLQALIVDGRLNELYVVIQELQDMD 739 (909)
Q Consensus 705 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 739 (909)
|. +...+..++.++...|++++|+..|++..+..
T Consensus 89 p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 AS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 76 77788888888888888888888888887654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.8e-05 Score=77.76 Aligned_cols=187 Identities=10% Similarity=0.053 Sum_probs=110.8
Q ss_pred HHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCch
Q 002549 646 IDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRL 725 (909)
Q Consensus 646 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 725 (909)
+.++...|++++|.+.--.+++. .+.+......-..++.-.++.+.|...|++.++.+|. .......-
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkl-d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpd--h~~sk~~~--------- 243 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKL-DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPD--HQKSKSAS--------- 243 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhc-ccchhHHHHhcccccccccchHHHHHHHhhhhccChh--hhhHHhHh---------
Confidence 34556666777777666666654 2333333333334444556777777777777765543 11111110
Q ss_pred hhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhccCchHHHHHHH
Q 002549 726 NELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA---AGYFPTMYLYRVMSGLFCKGKRVRDVEAMV 802 (909)
Q Consensus 726 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 802 (909)
.-.+.++..... .+-..+.|++.+|.+.|.+.+. ..+.|+...|........+.|+..+|+.-.
T Consensus 244 -~~~k~le~~k~~------------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc 310 (486)
T KOG0550|consen 244 -MMPKKLEVKKER------------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDC 310 (486)
T ss_pred -hhHHHHHHHHhh------------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhh
Confidence 001111111111 2455678899999999998886 344566777888888888999999999999
Q ss_pred HHHHHCCCCCCHHhHHHHHHH--hhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHH
Q 002549 803 SEMKEAGFKPDLSIWNSMLKL--YTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYC 860 (909)
Q Consensus 803 ~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 860 (909)
+.+++ +. +..+...+..+ +...+++++|.+-|+++.+....+.. .++.....++-
T Consensus 311 ~~Al~--iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 311 NEALK--ID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred hhhhh--cC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 88875 32 22444444444 44458999999999999884333322 44444444444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.4e-05 Score=78.10 Aligned_cols=139 Identities=13% Similarity=-0.003 Sum_probs=120.7
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHH
Q 002549 613 YCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYER 692 (909)
Q Consensus 613 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 692 (909)
....|.+++|+..++.+++ ..|+++......++.+.+.++..+|.+.+++++.. .|.....+-.++.+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCccHHHHHHHHHHHhcCChHH
Confidence 4456788888888888877 67899999999999999999999999999999887 56568888889999999999999
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002549 693 ARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA 772 (909)
Q Consensus 693 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 772 (909)
|+.+++......|+ +...|..|.++|...|+..++....-+ .+.-.|++++|...+....+
T Consensus 393 ai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 99999999998887 889999999999999998887775544 67778999999999998887
Q ss_pred c
Q 002549 773 A 773 (909)
Q Consensus 773 ~ 773 (909)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 3
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.5e-05 Score=85.69 Aligned_cols=224 Identities=12% Similarity=0.116 Sum_probs=145.8
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCC-----ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 002549 634 IPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPV-----DRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPT 708 (909)
Q Consensus 634 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 708 (909)
-.|++...|...+......++.+.|+++.++++.. ..+ -.-+|.++++.-...|.-+...++|+++.+. .. .
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-cd-~ 1529 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-CD-A 1529 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-cc-h
Confidence 45777777777777777777777777777777653 211 2456667777666677777777788877663 22 2
Q ss_pred cccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch---HHHHHHH
Q 002549 709 VDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPT---MYLYRVM 785 (909)
Q Consensus 709 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l 785 (909)
...|..|...|.+.+++++|.++++.|.+.- ......|...++.+.+..+-++|..++.+.++. .|. .......
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKF 1606 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHH
Confidence 3446667777777777777777777776653 245566666777777777777777777777763 233 3334444
Q ss_pred HHHHhccCchHHHHHHHHHHHHCCCCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhc
Q 002549 786 SGLFCKGKRVRDVEAMVSEMKEAGFKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE--DSFNTLIIMYCRD 862 (909)
Q Consensus 786 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~ 862 (909)
+..-.++|+.+.+..+|+..+.. .|. ...|+.++..=.++|+.+-++.+|++++..++.|.. ..|.-...---..
T Consensus 1607 AqLEFk~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred HHHHhhcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhc
Confidence 55556777777777777777763 333 356777777777777777788888888777666643 3333333333334
Q ss_pred CCh
Q 002549 863 CRP 865 (909)
Q Consensus 863 g~~ 865 (909)
|+-
T Consensus 1685 Gde 1687 (1710)
T KOG1070|consen 1685 GDE 1687 (1710)
T ss_pred Cch
Confidence 553
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.8e-05 Score=86.09 Aligned_cols=233 Identities=15% Similarity=0.117 Sum_probs=149.3
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC----CchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHH
Q 002549 605 LYRSMVVAYCKMDFPETAHFIADQAEKKGIPFE----DLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNAL 680 (909)
Q Consensus 605 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 680 (909)
.|...+....+.++.++|+.+.++++.. +++. -..+|..+.+....-|.-+...++|+++.+.+. .-.+|..|
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~V~~~L 1536 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYTVHLKL 1536 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHHHHHHH
Confidence 3444555555555555555555555542 2111 144555555555555666667777777776532 23456677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccH-HHHHHHHHHHHhcCC
Q 002549 681 IKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISK-SSILLMLDAFARSGN 759 (909)
Q Consensus 681 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~ 759 (909)
...|...+++++|.++++.|+++.- -....|...+..+.++++-+.|..+++++.+.-.+... ..+...++.-.+.||
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 7777777777788888877777633 24556777777777777777777777777665433222 334445666778899
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHH--hHHHHHHHhhccCCHHHHHHHH
Q 002549 760 IFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLS--IWNSMLKLYTGIEDFKKTIQVY 837 (909)
Q Consensus 760 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~ 837 (909)
.+.++.+|+..+..- +--...|+.+++.-.++|..+.+..+|+++.+.++.|... .|.--+..=..+|+-..+..+=
T Consensus 1616 aeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred chhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 999999999888742 3356789999999999999999999999999887776542 3333333333445544444444
Q ss_pred HHHHH
Q 002549 838 QEIQE 842 (909)
Q Consensus 838 ~~~~~ 842 (909)
.++.+
T Consensus 1695 arA~E 1699 (1710)
T KOG1070|consen 1695 ARAKE 1699 (1710)
T ss_pred HHHHH
Confidence 44433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00022 Score=65.67 Aligned_cols=149 Identities=10% Similarity=0.049 Sum_probs=79.9
Q ss_pred CCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhH
Q 002549 493 IELDHEK-LLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMY 571 (909)
Q Consensus 493 ~~~d~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 571 (909)
..++..+ +..++-+....|+.+.|...++.+....|. +..+...-+..+-..|++++|+++|+++.+.+ |.+..++
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~ 123 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIR 123 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHH
Confidence 4555554 344555666777777777777777666533 23333333334555667777777777776665 5566666
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHH
Q 002549 572 ESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIID 647 (909)
Q Consensus 572 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 647 (909)
-.-+...-.+|+.-+|++-+.+..+. +..|.+.|..+...|...|++++|...+++++- +.|-++..+..++.
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae 196 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAE 196 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHH
Confidence 55555555555555555555554432 233444455555555555555555444444443 33433333333333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-05 Score=78.83 Aligned_cols=293 Identities=10% Similarity=-0.011 Sum_probs=162.9
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcC
Q 002549 574 LIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLK 653 (909)
Q Consensus 574 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 653 (909)
....+....++.+|+..+...++..+ -+..-|..-...+...++++++..-.+..++ +.|............+...+
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhH
Confidence 33444455555555555555554321 1222333334444444555554444433333 34444444444444444444
Q ss_pred ChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCcccHHHHH-HHHHhcCchhhHHHH
Q 002549 654 LWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGP-SPTVDSINGLL-QALIVDGRLNELYVV 731 (909)
Q Consensus 654 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~A~~~ 731 (909)
+..+|.+.++.-. . +....|+..+++...... +|...+|..+- .++...|++++|.+.
T Consensus 132 ~~i~A~~~~~~~~---------~-----------~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQ---------A-----------YKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhhhhh---------h-----------hHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 4444444443100 0 011222233333322221 13333343332 445566777777766
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH-------------HHHHHHHHHHhccCchHHH
Q 002549 732 IQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTM-------------YLYRVMSGLFCKGKRVRDV 798 (909)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------------~~~~~l~~~~~~~g~~~~A 798 (909)
-....+.+.. +....-.-..++.-.++.+.|..-|++.+..+ |+. ..+..-.+-..+.|++.+|
T Consensus 192 a~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 192 AIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 6665554421 11111112233445566777777777766533 321 2233334556789999999
Q ss_pred HHHHHHHHHCCCCCCHH-----hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHH
Q 002549 799 EAMVSEMKEAGFKPDLS-----IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLM 872 (909)
Q Consensus 799 ~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 872 (909)
.+.+.+.+. +.|++. .|.....+..+.|++.+|+.-.+.+++ ++|.- ..+..-+.++.-.++|++|++.+
T Consensus 269 ~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 269 YECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred HHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999986 566543 456666677889999999999999999 88864 88889999999999999999999
Q ss_pred HHHHHcCCCCC-hhhHHHHHHHHhc
Q 002549 873 HEMRKLGLEPK-LDTYKSLISAFGK 896 (909)
Q Consensus 873 ~~~~~~~~~p~-~~~~~~l~~~~~~ 896 (909)
++..+....+. ..+++....++-+
T Consensus 345 ~~a~q~~~s~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 345 EKAMQLEKDCEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHhhccccchHHHHHHHHHHHHH
Confidence 99987543332 3334333434443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.9e-05 Score=71.00 Aligned_cols=247 Identities=11% Similarity=0.088 Sum_probs=146.9
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCH
Q 002549 611 VAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCY 690 (909)
Q Consensus 611 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 690 (909)
.-+.-.|++..++..-.... ..+........+.++|...|.+.....-.... ..+.......+......-++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~---~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~----~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFS---SSKTDVELDVYMYRAYLALGQYQIVISEIKEG----KATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhc---cccchhHHHHHHHHHHHHcccccccccccccc----cCChHHHHHHHHHHhhCcchh
Confidence 33444577766665543322 33356667777788888888766544333221 122333333333333333444
Q ss_pred HHHHH-HHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002549 691 ERARA-VFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHG 769 (909)
Q Consensus 691 ~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 769 (909)
+.-+. +.+.+.......+......-+..|...|++++|...+.... ..+ ....=...+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE--~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLE--AAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 33333332222122222223355778888888888877621 111 122223455677788888888888
Q ss_pred HHhcCCCchHHHHHHHHHH----HhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCC
Q 002549 770 MKAAGYFPTMYLYRVMSGL----FCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADL 845 (909)
Q Consensus 770 ~~~~~~~p~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 845 (909)
|.+. .+..+.+.|+.+ ....++..+|.=+|+++-++ ++|...+.+....++...|++++|..+++.++. -
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--k 236 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--K 236 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--c
Confidence 8873 233444444443 34556788888888888764 678888888888888888888888888888887 3
Q ss_pred CC-ChhhHHHHHHHHHhcCChhhH-HHHHHHHH
Q 002549 846 QP-DEDSFNTLIIMYCRDCRPEEG-LSLMHEMR 876 (909)
Q Consensus 846 ~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 876 (909)
.| ++.++.+++-+-...|+..++ .+.+.++.
T Consensus 237 d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 44 567777877777777776444 45566665
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.4e-05 Score=68.69 Aligned_cols=173 Identities=13% Similarity=0.063 Sum_probs=99.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002549 534 LTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAY 613 (909)
Q Consensus 534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 613 (909)
++..++.+...+|+.+.|...++++...- |.+...--.-...+...|++++|.++++.+++.+ +.|..++..-+...
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence 44455555666777777777777766553 5555544443444555677777777777776544 33445555555555
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcC---CH
Q 002549 614 CKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASG---CY 690 (909)
Q Consensus 614 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~ 690 (909)
-..|+.-+|++-+...++ .-+.+..+|..+...|...|+++.|.-.+++++=. .|.++..+..+...+...| ++
T Consensus 131 ka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~-~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI-QPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHH
Confidence 555665566665555555 34556666666666666666666666666665543 3445555555555443332 45
Q ss_pred HHHHHHHHHHHHcCCCCCcccHH
Q 002549 691 ERARAVFNTMMRDGPSPTVDSIN 713 (909)
Q Consensus 691 ~~A~~~~~~~~~~~~~~~~~~~~ 713 (909)
..|.++|.+.++..++ +...+.
T Consensus 208 ~~arkyy~~alkl~~~-~~ral~ 229 (289)
T KOG3060|consen 208 ELARKYYERALKLNPK-NLRALF 229 (289)
T ss_pred HHHHHHHHHHHHhChH-hHHHHH
Confidence 5566666666665442 433333
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.3e-06 Score=72.96 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=70.5
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Q 002549 634 IPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSIN 713 (909)
Q Consensus 634 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 713 (909)
.+|++......++..+...|++++|.+.++.+.+. .|.++..+..++.++...|++++|...++++++.++. +...+.
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~ 89 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY-DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYF 89 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHH
Confidence 55666666666777777777777777777776665 3556677777777777777777777777777666554 455566
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHhCC
Q 002549 714 GLLQALIVDGRLNELYVVIQELQDMD 739 (909)
Q Consensus 714 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 739 (909)
.+..++...|++++|...+++..+..
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 66666667777777777766666543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00037 Score=64.76 Aligned_cols=248 Identities=15% Similarity=0.107 Sum_probs=154.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002549 195 ACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEK 274 (909)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 274 (909)
-+.-.|+|..++..-...... +.++..-.-+-++|...|.+..... +++... .|.......+.......++.+.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHH
Confidence 344457777777666555433 1344555556667777777654332 222221 2333333333333333344333
Q ss_pred -HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002549 275 -VKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEML 353 (909)
Q Consensus 275 -a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 353 (909)
..++.+.+.......+......-...|++.|++++|+...+... +......=+..+.+..+++-|.+.++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555444554555555667888999999998877622 33333344455677888899999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 002549 354 DASVKPTLRTYSALICGYAK----AGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTP 429 (909)
Q Consensus 354 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 429 (909)
+. -+..|.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..+++..+.+. ..
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~ 239 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AK 239 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 74 366777777777764 34688888999998874 46888888888889999999999999999988764 33
Q ss_pred CHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 002549 430 DQALYEIMIGVLGRENKG-EEIRKVVRDMKE 459 (909)
Q Consensus 430 ~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 459 (909)
++.+...++-.-...|.. +...+.+..+..
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 566665555554445544 334455555554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.5e-05 Score=68.88 Aligned_cols=100 Identities=7% Similarity=0.042 Sum_probs=84.2
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHH
Q 002549 783 RVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-EDSFNTLIIMYC 860 (909)
Q Consensus 783 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 860 (909)
=.+...+...|++++|+++|+-+.. +.|.. .-|..|+.+|...|++++|+..|.++.. +.|| +.++.+++.++.
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHH
Confidence 3455667789999999999999987 55655 6688899999999999999999999999 8895 589999999999
Q ss_pred hcCChhhHHHHHHHHHH-cCCCCChhh
Q 002549 861 RDCRPEEGLSLMHEMRK-LGLEPKLDT 886 (909)
Q Consensus 861 ~~g~~~~A~~~~~~~~~-~~~~p~~~~ 886 (909)
..|+.++|.+.|+..+. .+..|....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~~~~~~~~ 141 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICGEVSEHQI 141 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhccChhHHH
Confidence 99999999999999987 344444333
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=78.75 Aligned_cols=114 Identities=18% Similarity=0.077 Sum_probs=63.2
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCC--CchHHHHHHHHhhhcCChHHHHHHHHHH--Hhc--CCC-CChHhHHHHHH
Q 002549 610 VVAYCKMDFPETAHFIADQAEKKGIPFE--DLSIYVDIIDAYGRLKLWQKAESLVGCL--RQR--CAP-VDRKVWNALIK 682 (909)
Q Consensus 610 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~--~~~-~~~~~~~~l~~ 682 (909)
..-+|+.|+.+..+.+|+.+++.|-.-- -..+|..|+++|.-.++|++|+++...= +.+ |.. -.......|++
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4467888888888888888887553211 1445667777777778888887765431 111 111 12333444555
Q ss_pred HHHHcCCHHHHHHHHHH----HHHcCCC-CCcccHHHHHHHHHhcC
Q 002549 683 AYAASGCYERARAVFNT----MMRDGPS-PTVDSINGLLQALIVDG 723 (909)
Q Consensus 683 ~~~~~g~~~~A~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~g 723 (909)
.+--.|.+++|+-.-.+ +.+.|-. .....+..+...|...|
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKG 149 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcc
Confidence 55566777776544333 2222211 12344555666665544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.2e-05 Score=66.80 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=81.7
Q ss_pred CC-CCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Q 002549 634 IP-FEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSI 712 (909)
Q Consensus 634 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 712 (909)
+. ++.......++..+...|++++|..+|+-+... .|.+...|..|+.++...|++++|+..|.++...+++ +..++
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~-Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~ 106 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY-DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAP 106 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHH
Confidence 55 566677777888888888888888888888776 5667778888888888888999999999988888776 77788
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHHh
Q 002549 713 NGLLQALIVDGRLNELYVVIQELQD 737 (909)
Q Consensus 713 ~~l~~~~~~~g~~~~A~~~~~~~~~ 737 (909)
..+..++...|+.+.|.+.|+..+.
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888888777776553
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.5e-05 Score=68.17 Aligned_cols=110 Identities=13% Similarity=0.012 Sum_probs=79.7
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCC
Q 002549 661 LVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDF 740 (909)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 740 (909)
.+++++.. .|.+......++..+...|++++|.+.|+.+...++. +...|..+..++...|++++|...+++..+.+
T Consensus 5 ~~~~~l~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGL-DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcC-ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 45555554 3445566777888888889999999999998887765 66777788888888888888888888777665
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002549 741 KISKSSILLMLDAFARSGNIFEVKKIYHGMKAA 773 (909)
Q Consensus 741 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 773 (909)
+.+...+..+...+...|++++|...|+...+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334455555666777777777777777777663
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00017 Score=62.74 Aligned_cols=132 Identities=8% Similarity=0.052 Sum_probs=87.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH---HhHH
Q 002549 742 ISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL---SIWN 818 (909)
Q Consensus 742 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~ 818 (909)
|....-..|..+....|+..+|...|++....-+.-+....-.+..+....+++..|...++++.+. +|+. .+-.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCCchH
Confidence 3333344466777777777777777777776545556666667777777777777777777777663 2332 2344
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 819 SMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 819 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
.+..+|...|++.+|...|+.++. ..|++..-...+..+.++|+.++|..-+....+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 556667777777777777777777 677777777777777777777766665555543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.18 E-value=4e-05 Score=68.36 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=77.3
Q ss_pred ccCchHHHHHHHHHHHHCCCCCCH----HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhc
Q 002549 791 KGKRVRDVEAMVSEMKEAGFKPDL----SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE----DSFNTLIIMYCRD 862 (909)
Q Consensus 791 ~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~ 862 (909)
..++...+...++.+.+. .|+. .....+...+...|++++|...|+++++.. ||+ .....++.++...
T Consensus 23 ~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~~a~l~LA~~~~~~ 98 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPELKPLARLRLARILLQQ 98 (145)
T ss_pred HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHc
Confidence 366777777777777763 3333 233445567777888888888888888743 443 3455678888888
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 863 CRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 863 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
|++++|+..++..... ...+..+...+++|.+.|++++|+..|+
T Consensus 99 ~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 99 GQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred CCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888888664322 2234466677888888888888888775
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.011 Score=59.67 Aligned_cols=206 Identities=13% Similarity=0.118 Sum_probs=128.6
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-----cHHHHHHHHH----hcCchhhHHHHHHHHHhCCCCccH
Q 002549 674 RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVD-----SINGLLQALI----VDGRLNELYVVIQELQDMDFKISK 744 (909)
Q Consensus 674 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~ 744 (909)
...+..++....+.++...|...+.-....+|..++. +-..+-...+ ...+..+-+.++......++.--.
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ 377 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ 377 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 3456667777888899999999998887766553311 1112222222 233445556677776665543221
Q ss_pred HHHHH---HHHHHHhcCC-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHCCCCC
Q 002549 745 SSILL---MLDAFARSGN-IFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCK--------GKRVRDVEAMVSEMKEAGFKP 812 (909)
Q Consensus 745 ~~~~~---l~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p 812 (909)
.... -+.-+.+.|. -++|+.+++.+++ ++|......+.+..+.| ...+..-+.+-+-+.+.|++|
T Consensus 378 -Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 378 -LVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred -HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 1111 2233555565 7889999999887 23322222222222221 122333333333444567776
Q ss_pred CH----HhHHHHHHH--hhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhh
Q 002549 813 DL----SIWNSMLKL--YTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDT 886 (909)
Q Consensus 813 ~~----~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 886 (909)
-. ..-|-|..| +..+|++.++.-+..-+.+ +.|++.+|..+|-++....+|+||.+++..+ +|+..+
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~ 527 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERM 527 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhh
Confidence 33 345555554 5678999999999999999 9999999999999999999999999999884 667666
Q ss_pred HHH
Q 002549 887 YKS 889 (909)
Q Consensus 887 ~~~ 889 (909)
++.
T Consensus 528 ~ds 530 (549)
T PF07079_consen 528 RDS 530 (549)
T ss_pred HHH
Confidence 553
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.4e-05 Score=77.43 Aligned_cols=124 Identities=11% Similarity=0.179 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhh
Q 002549 746 SILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYT 825 (909)
Q Consensus 746 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 825 (909)
....++..+...++++.|..+++++.+.. |+ +...++..+...++-.+|.+++.+.++. .+-|...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 34446666777788888888888888754 44 3344677777778888899998888863 2335456666667788
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHH
Q 002549 826 GIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 826 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 876 (909)
..++++.|+++.+++.+ +.|+. .+|..|+.+|...|++++|+-.++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88999999999999999 88965 789999999999999999998887664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.9e-05 Score=73.58 Aligned_cols=97 Identities=15% Similarity=0.274 Sum_probs=59.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccC
Q 002549 751 LDAFARSGNIFEVKKIYHGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIE 828 (909)
Q Consensus 751 ~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 828 (909)
.+-..+.+++++|+..|.+.++. .| |...|..-..+|.+.|.++.|++-.+..+. +.|.. .+|..|+.+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 44455666666666666666653 34 444555556666666666666666666665 44544 45666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHH
Q 002549 829 DFKKTIQVYQEIQEADLQPDEDSFN 853 (909)
Q Consensus 829 ~~~~A~~~~~~~~~~~~~p~~~~~~ 853 (909)
++++|++.|+++++ +.|+..+|.
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHH
Confidence 66666666666666 666655443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00011 Score=75.62 Aligned_cols=121 Identities=17% Similarity=0.289 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHH
Q 002549 780 YLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP-DEDSFNTLIIM 858 (909)
Q Consensus 780 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 858 (909)
.....|+..+...++++.|+++++++.+. .|+.. ..++..+...++-.+|++++++.++ ..| +...+..-+..
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER--DPEVA--VLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcHH--HHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 44456666777889999999999999874 46643 4467777778899999999999998 688 44667778889
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 859 YCRDCRPEEGLSLMHEMRKLGLEPK-LDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 859 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
|.+.|+++.|+++.+++. ...|+ ..+|..|+.+|.+.|++++|+-.++
T Consensus 244 Ll~k~~~~lAL~iAk~av--~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAV--ELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHhcCCHHHHHHHHHHHH--HhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 999999999999999999 45665 7799999999999999999998775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.9e-05 Score=65.80 Aligned_cols=116 Identities=8% Similarity=0.027 Sum_probs=83.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH----HhHHHHHHHhhccCC
Q 002549 756 RSGNIFEVKKIYHGMKAAGYF--PTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL----SIWNSMLKLYTGIED 829 (909)
Q Consensus 756 ~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~ 829 (909)
..++...+...++.+.+.... ......-.+...+...|++++|...|+.+.+.. ||. .....+...+...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCC
Confidence 377888888888888764211 123444556677888899999999999988754 443 244556777888899
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 002549 830 FKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEM 875 (909)
Q Consensus 830 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 875 (909)
+++|+..++.... -...+..+..++++|.+.|++++|...|++.
T Consensus 101 ~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 9999999876433 1224466778889999999999999998875
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.015 Score=57.45 Aligned_cols=272 Identities=14% Similarity=0.092 Sum_probs=148.1
Q ss_pred CCCCHHHHHHHHHH--HhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhh
Q 002549 493 IELDHEKLLSILSS--YNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTM 570 (909)
Q Consensus 493 ~~~d~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 570 (909)
+..|...+..++.+ ..-.|+++.|.+-|+.|.... ..-..-...|..--.+.|..+.|+++-++..... |.-...
T Consensus 114 lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA 190 (531)
T COG3898 114 LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPWA 190 (531)
T ss_pred hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCchH
Confidence 44555555555543 345788888888888887631 1111111122222346788888888888887665 777888
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhCC-CCCCHHHH--HHHHHH--Hhh-cCChhhHHHHHHHHHHcCCCCCCchHHHH
Q 002549 571 YESLIHSCEYNERFAEASQVFSDMRFYN-IEPSEDLY--RSMVVA--YCK-MDFPETAHFIADQAEKKGIPFEDLSIYVD 644 (909)
Q Consensus 571 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~--~~l~~~--~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 644 (909)
+...+...+..|+|+.|+++.+.-+... +.++..-- ..++.+ ... ..++..|...-.++.+ +.|+-...-..
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~ 268 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVV 268 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHH
Confidence 9999999999999999999998765432 23332211 111111 000 1123333333333333 34433333333
Q ss_pred HHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCc
Q 002549 645 IIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGR 724 (909)
Q Consensus 645 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 724 (909)
. ..++.+.|+..++-.+++.+-+..|.|++ ...|....-
T Consensus 269 A-----------------------------------Aralf~d~~~rKg~~ilE~aWK~ePHP~i------a~lY~~ar~ 307 (531)
T COG3898 269 A-----------------------------------ARALFRDGNLRKGSKILETAWKAEPHPDI------ALLYVRARS 307 (531)
T ss_pred H-----------------------------------HHHHHhccchhhhhhHHHHHHhcCCChHH------HHHHHHhcC
Confidence 3 34455555566666666665555444432 122222222
Q ss_pred hhhHHHHHHHHHhC-CCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh-ccCchHHHHHH
Q 002549 725 LNELYVVIQELQDM-DFKIS-KSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFC-KGKRVRDVEAM 801 (909)
Q Consensus 725 ~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~ 801 (909)
-+.++.-+++.... .++|+ ......+..+-...|++..|..--+.... ..|....|..|.+.-. ..|+-.++.++
T Consensus 308 gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 308 GDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred CCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHH
Confidence 23333333333221 22333 34444556666667777777666666554 3466667766666654 34777777777
Q ss_pred HHHHHHCCCCC
Q 002549 802 VSEMKEAGFKP 812 (909)
Q Consensus 802 ~~~~~~~~~~p 812 (909)
+.+..+.+-.|
T Consensus 386 lAqav~APrdP 396 (531)
T COG3898 386 LAQAVKAPRDP 396 (531)
T ss_pred HHHHhcCCCCC
Confidence 77777644333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=7e-05 Score=71.07 Aligned_cols=94 Identities=20% Similarity=0.149 Sum_probs=82.9
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCC
Q 002549 610 VVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGC 689 (909)
Q Consensus 610 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 689 (909)
..-..+.+++++|+..|.++++ +.|.++..|..-+.+|++.|.++.|++-++.++.. .|.....|..|+.+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHccCc
Confidence 3456677889999999999998 89999999999999999999999999999999887 56678889999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q 002549 690 YERARAVFNTMMRDGPS 706 (909)
Q Consensus 690 ~~~A~~~~~~~~~~~~~ 706 (909)
+++|.+.|+++++.+|.
T Consensus 165 ~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPD 181 (304)
T ss_pred HHHHHHHHHhhhccCCC
Confidence 99999999999996554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.016 Score=57.29 Aligned_cols=289 Identities=15% Similarity=0.094 Sum_probs=160.5
Q ss_pred cCCHHHHHHHHHHhhccCCcccchhhHHHHHHHH--HhcccHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhhcCChh
Q 002549 545 AQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSC--EYNERFAEASQVFSDMRFYNIEPSEDL--YRSMVVAYCKMDFPE 620 (909)
Q Consensus 545 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~ 620 (909)
.|+-..|.+.-.+..+. +..|....-.++.+. .-.|++++|.+-|+.|.. .|.... +..+.-.-.+.|..+
T Consensus 97 AGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHH
Confidence 55666666665554432 233444444444333 335888888888888874 232221 223333334566666
Q ss_pred hHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 002549 621 TAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTM 700 (909)
Q Consensus 621 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 700 (909)
.|+++-+.+.. .-|.-.-.........+..|+|+.|+++.+...+..
T Consensus 172 aAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~------------------------------- 218 (531)
T COG3898 172 AARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAK------------------------------- 218 (531)
T ss_pred HHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH-------------------------------
Confidence 66666665544 344444444445555555555555555554432210
Q ss_pred HHcCCCCCccc--HHHHHHH--HHh-cCchhhHHHHHHHHHhCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002549 701 MRDGPSPTVDS--INGLLQA--LIV-DGRLNELYVVIQELQDMDFKISKS-SILLMLDAFARSGNIFEVKKIYHGMKAAG 774 (909)
Q Consensus 701 ~~~~~~~~~~~--~~~l~~~--~~~-~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 774 (909)
-..++..- -..|+.+ ... ..+...|...-.+..+ ..|+.. .-.....++.+.|++.++..+++.+.+..
T Consensus 219 ---vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 219 ---VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred ---hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC
Confidence 01111111 0011100 000 1112222222222222 223311 11224467888999999999999998865
Q ss_pred CCchHHHHHHHHHHHhccCchHHHH-HHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhH
Q 002549 775 YFPTMYLYRVMSGLFCKGKRVRDVE-AMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSF 852 (909)
Q Consensus 775 ~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 852 (909)
..|+ ++ +...+.+.|+.-... +-..++.. ++||. .+...+..+-...|++..|..-.+.+.. ..|....|
T Consensus 294 PHP~--ia--~lY~~ar~gdta~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~ 365 (531)
T COG3898 294 PHPD--IA--LLYVRARSGDTALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAY 365 (531)
T ss_pred CChH--HH--HHHHHhcCCCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHH
Confidence 4444 33 233445666543221 12222333 57776 5666677788888999999999999998 89999999
Q ss_pred HHHHHHHHh-cCChhhHHHHHHHHHHcCCCCCh
Q 002549 853 NTLIIMYCR-DCRPEEGLSLMHEMRKLGLEPKL 884 (909)
Q Consensus 853 ~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~ 884 (909)
..|+++-.- .|+-.++..++-+.++..-.|..
T Consensus 366 lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 366 LLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 999987654 59999999999999876556653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.017 Score=61.38 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=37.3
Q ss_pred hhccCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 002549 824 YTGIEDFKKTIQVYQEIQEA-DLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK 883 (909)
Q Consensus 824 ~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 883 (909)
....|..+.|++..-.+.+. ++-|-...|..++-+-|....+.-..+.|-++.+....|+
T Consensus 1031 ql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~ 1091 (1189)
T KOG2041|consen 1031 QLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDD 1091 (1189)
T ss_pred HHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCH
Confidence 34457788887766555442 3445456777777766666666666666666666555555
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0031 Score=63.57 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHhhhc-CChHHHHHHHHHHHhcCCCC-----ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002549 644 DIIDAYGRL-KLWQKAESLVGCLRQRCAPV-----DRKVWNALIKAYAASGCYERARAVFNTMMRDG 704 (909)
Q Consensus 644 ~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 704 (909)
.++..|... |++++|++.|+++.+.-... -..++..++..+...|++++|.++|+++....
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 345556666 67777777776665431000 12344455666777777777777777776543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00048 Score=60.06 Aligned_cols=148 Identities=13% Similarity=0.042 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002549 689 CYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYH 768 (909)
Q Consensus 689 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 768 (909)
|++...+-..+..+ ..|.+..-..|..++.+.|++.||...|++...--.-.|......+.++....++.-.|...++
T Consensus 71 dP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 71 DPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred ChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34444433333333 2344444455566666666666666666666555555555666666666666666666666666
Q ss_pred HHHhcCCC-chHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHH
Q 002549 769 GMKAAGYF-PTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEI 840 (909)
Q Consensus 769 ~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 840 (909)
++.+.... -++..--.+...|...|++.+|+..|+.+.. +.|+..........+.++|+.++|..-+..+
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 66553200 0222233345556666666666666666665 4555544444444555555555554444433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.4e-06 Score=52.00 Aligned_cols=34 Identities=35% Similarity=0.660 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh
Q 002549 116 VYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDL 149 (909)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 149 (909)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.5e-05 Score=73.69 Aligned_cols=132 Identities=9% Similarity=-0.084 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC-CchHHHHHHHHHHHhccCchHHHHHHHHHHHH----CCC-CCCHH
Q 002549 746 SILLMLDAFARSGNIFEVKKIYHGMKA----AGY-FPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKE----AGF-KPDLS 815 (909)
Q Consensus 746 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~ 815 (909)
.|..|.+.|.-.|+++.|+...+.-+. .|- ......+..+.+++.-.|+++.|.+.++.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344556666667778877776665433 121 12345677788888888999999988877543 221 22345
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 816 IWNSMLKLYTGIEDFKKTIQVYQEIQEA-----DLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
+..+|+++|.-..++++|+.++.+=+.. +....-.++.+|+.++...|..++|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 7888999999999999999998885541 1222457888999999999999999999887765
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.7e-06 Score=64.77 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=32.7
Q ss_pred CchHHHHHHHHHHHHCCCCC---CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhH
Q 002549 793 KRVRDVEAMVSEMKEAGFKP---DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEG 868 (909)
Q Consensus 793 g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A 868 (909)
|++++|+.+++++.+. .| +...+..++.+|.+.|++++|++++++ .+ ..|.+ .....++.+|.+.|++++|
T Consensus 3 ~~y~~Ai~~~~k~~~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 3 GNYENAIKYYEKLLEL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp T-HHHHHHHHHHHHHH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred ccHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4445555555555442 22 222333344444555555555555544 22 23322 3333344455555555555
Q ss_pred HHHHHH
Q 002549 869 LSLMHE 874 (909)
Q Consensus 869 ~~~~~~ 874 (909)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.5e-05 Score=63.13 Aligned_cols=77 Identities=25% Similarity=0.401 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCCHHH
Q 002549 827 IEDFKKTIQVYQEIQEADLQP---DEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK-LDTYKSLISAFGKQQQLEQ 902 (909)
Q Consensus 827 ~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 902 (909)
+|++++|+.+++++++ ..| +...+..++.+|.+.|++++|.+++++ .+ ..|. ....-.++.++.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~--~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE--LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHH--HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHH
Confidence 4778888888888887 555 335566678888888888888888877 32 2222 3444456777888888888
Q ss_pred HHHhhc
Q 002549 903 AEELLK 908 (909)
Q Consensus 903 A~~~~~ 908 (909)
|++.|+
T Consensus 77 Ai~~l~ 82 (84)
T PF12895_consen 77 AIKALE 82 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888775
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.3e-05 Score=50.36 Aligned_cols=33 Identities=30% Similarity=0.602 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 002549 115 QVYNAMMGIYARNGRFQKVQELLDLMRKRGCEP 147 (909)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~ 147 (909)
.+||.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00014 Score=67.01 Aligned_cols=97 Identities=11% Similarity=0.065 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCC--HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHH
Q 002549 778 TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPD--LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNT 854 (909)
Q Consensus 778 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ 854 (909)
....+..++..+...|++++|+..+++++.....|. ..++..++.+|...|++++|+..++++++ +.|+. .++..
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~ 111 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHH
Confidence 455667777888888999999999999976321221 24788888999999999999999999998 77854 66777
Q ss_pred HHHHHH-------hcCChhhHHHHHHHHH
Q 002549 855 LIIMYC-------RDCRPEEGLSLMHEMR 876 (909)
Q Consensus 855 l~~~~~-------~~g~~~~A~~~~~~~~ 876 (909)
++.++. ..|++++|...+++..
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 777777 8888887766666554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0013 Score=66.28 Aligned_cols=196 Identities=12% Similarity=0.216 Sum_probs=110.6
Q ss_pred HHHHhhhcCChHHHHHHHHHHHhcCC----CCC-hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 002549 645 IIDAYGRLKLWQKAESLVGCLRQRCA----PVD-RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQAL 719 (909)
Q Consensus 645 l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 719 (909)
.++.|-..|+|++|.+.|.++.+... +.+ ...|...+.+|.+ +++++|.+.++++ +..|
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A---------------~~~y 104 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKA---------------IEIY 104 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHH---------------HHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHH---------------HHHH
Confidence 45566677777777777776543210 000 1122222333322 2555555555554 3445
Q ss_pred HhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh----cCCCc--hHHHHHHHHHHHhcc
Q 002549 720 IVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARS-GNIFEVKKIYHGMKA----AGYFP--TMYLYRVMSGLFCKG 792 (909)
Q Consensus 720 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~----~~~~p--~~~~~~~l~~~~~~~ 792 (909)
...|++..|-..+.. +...|... |++++|.+.|++..+ .+ .+ -..++..++..+.+.
T Consensus 105 ~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 105 REAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 666666666665555 55567777 888888888888875 23 22 245667788889999
Q ss_pred CchHHHHHHHHHHHHCCCCCCH--H----hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC---h---hhHHHHHHHHH
Q 002549 793 KRVRDVEAMVSEMKEAGFKPDL--S----IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD---E---DSFNTLIIMYC 860 (909)
Q Consensus 793 g~~~~A~~~~~~~~~~~~~p~~--~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~---~~~~~l~~~~~ 860 (909)
|++++|+++|++........+. . .+...+-++...||...|.+.+++..+ ..|. + .....|+.++-
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~--~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS--QDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT--TSTTSTTSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHH
Confidence 9999999999998764322221 1 122233345556899999999999887 5553 1 23445556655
Q ss_pred hcCC---hhhHHHHHHHH
Q 002549 861 RDCR---PEEGLSLMHEM 875 (909)
Q Consensus 861 ~~g~---~~~A~~~~~~~ 875 (909)
.|+ +.+|+.-|+.+
T Consensus 247 -~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 247 -EGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp -TT-CCCHHHHCHHHTTS
T ss_pred -hCCHHHHHHHHHHHccc
Confidence 344 45555555554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00014 Score=62.62 Aligned_cols=94 Identities=12% Similarity=0.095 Sum_probs=70.1
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH----HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC----hhhH
Q 002549 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL----SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD----EDSF 852 (909)
Q Consensus 781 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~ 852 (909)
++-.++..+.+.|++++|.+.++++.+. .|+. ..+..++.++...|++++|...+++++. ..|+ ..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK--KYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HCCCCCcccHHH
Confidence 4455666677788888888888888763 3432 3566677788888888888888888887 5564 3457
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHc
Q 002549 853 NTLIIMYCRDCRPEEGLSLMHEMRKL 878 (909)
Q Consensus 853 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 878 (909)
..++.++.+.|++++|.+.++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 77888888888888888888888854
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.8e-05 Score=50.15 Aligned_cols=33 Identities=42% Similarity=0.679 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 002549 223 TYNAMISVYGRCGLFEKAEQLFKELESKGFFPD 255 (909)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 255 (909)
+||++|.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0047 Score=60.15 Aligned_cols=202 Identities=13% Similarity=0.077 Sum_probs=115.4
Q ss_pred CchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Q 002549 638 DLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVW---NALIKAYAASGCYERARAVFNTMMRDGPSPTVDSING 714 (909)
Q Consensus 638 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 714 (909)
+.......+..+...|++++|.+.|+++... .|.+.... -.++.+|.+.+++++|...+++.++..|......+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR-YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3444556677778889999999999998876 45444443 3566788889999999999999999877644444444
Q ss_pred HHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCc
Q 002549 715 LLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKR 794 (909)
Q Consensus 715 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 794 (909)
.+.+.+.... ....+......+ . .........+|...|+.+++ .|..+.-
T Consensus 110 Y~~g~~~~~~---~~~~~~~~~~~~----~--------~~rD~~~~~~A~~~~~~li~---------------~yP~S~y 159 (243)
T PRK10866 110 YMRGLTNMAL---DDSALQGFFGVD----R--------SDRDPQHARAAFRDFSKLVR---------------GYPNSQY 159 (243)
T ss_pred HHHHHhhhhc---chhhhhhccCCC----c--------cccCHHHHHHHHHHHHHHHH---------------HCcCChh
Confidence 4444331100 000010000000 0 00000112234444444443 2223333
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChhhHHH
Q 002549 795 VRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD----EDSFNTLIIMYCRDCRPEEGLS 870 (909)
Q Consensus 795 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 870 (909)
..+|...+..+.+. + - .--..++.-|.+.|.+.-|+.-++.+++ --|+ ..+...++.+|...|..++|.+
T Consensus 160 a~~A~~rl~~l~~~-l--a-~~e~~ia~~Y~~~~~y~AA~~r~~~v~~--~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 160 TTDATKRLVFLKDR-L--A-KYELSVAEYYTKRGAYVAVVNRVEQMLR--DYPDTQATRDALPLMENAYRQLQLNAQADK 233 (243)
T ss_pred HHHHHHHHHHHHHH-H--H-HHHHHHHHHHHHcCchHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence 44555444443320 0 0 0111345567777888888888888887 4553 3567778888888888888888
Q ss_pred HHHHHH
Q 002549 871 LMHEMR 876 (909)
Q Consensus 871 ~~~~~~ 876 (909)
+...+.
T Consensus 234 ~~~~l~ 239 (243)
T PRK10866 234 VAKIIA 239 (243)
T ss_pred HHHHHh
Confidence 776654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00018 Score=59.09 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=57.3
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 002549 642 YVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIV 721 (909)
Q Consensus 642 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 721 (909)
+..++..+...|++++|...++++.+. .+.+..++..++.++...|++++|.+.++...+..+. +..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 445566666666777777777766654 3444456666666677777777777777776665544 33455555555666
Q ss_pred cCchhhHHHHHHHHHh
Q 002549 722 DGRLNELYVVIQELQD 737 (909)
Q Consensus 722 ~g~~~~A~~~~~~~~~ 737 (909)
.|++++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666665555443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0004 Score=59.71 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=57.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC---hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--cccHHHH
Q 002549 641 IYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD---RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPT--VDSINGL 715 (909)
Q Consensus 641 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l 715 (909)
.+..++..+.+.|++++|.+.|+.+.+. .|.+ ...+..++.++...|+++.|...|+.++...|... ...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK-YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4455666666666677777666666554 2222 34555566667777777777777777766544421 2335555
Q ss_pred HHHHHhcCchhhHHHHHHHHHhCC
Q 002549 716 LQALIVDGRLNELYVVIQELQDMD 739 (909)
Q Consensus 716 ~~~~~~~g~~~~A~~~~~~~~~~~ 739 (909)
..++.+.|++++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 555666666666666666655543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00019 Score=74.66 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=51.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCC-HHhHHHHHHHhhccCC
Q 002549 751 LDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPD-LSIWNSMLKLYTGIED 829 (909)
Q Consensus 751 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 829 (909)
...+...|++++|+..|+++++.. +.+...|..++.+|.+.|++++|+..++++++ +.|+ ...|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCC
Confidence 344455566666666666665532 11344555555555566666666666666655 3343 2445555555555666
Q ss_pred HHHHHHHHHHHHHcCCCCCh
Q 002549 830 FKKTIQVYQEIQEADLQPDE 849 (909)
Q Consensus 830 ~~~A~~~~~~~~~~~~~p~~ 849 (909)
+++|+..|+++++ +.|+.
T Consensus 86 ~~eA~~~~~~al~--l~P~~ 103 (356)
T PLN03088 86 YQTAKAALEKGAS--LAPGD 103 (356)
T ss_pred HHHHHHHHHHHHH--hCCCC
Confidence 6666666666665 55543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.049 Score=55.25 Aligned_cols=50 Identities=10% Similarity=0.071 Sum_probs=31.0
Q ss_pred hhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 002549 649 YGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTM 700 (909)
Q Consensus 649 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 700 (909)
+..+|++.++.-.-.-+.+ +.|++.+|..++-++....++++|.+++..+
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3455666666554444444 3556777777776666667777777777665
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.3e-05 Score=48.49 Aligned_cols=32 Identities=38% Similarity=0.630 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 002549 223 TYNAMISVYGRCGLFEKAEQLFKELESKGFFP 254 (909)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 254 (909)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00069 Score=62.54 Aligned_cols=96 Identities=15% Similarity=0.211 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCC-C-HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC-hhhHHHH
Q 002549 779 MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP-D-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-EDSFNTL 855 (909)
Q Consensus 779 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 855 (909)
...+..++..+...|++++|+..|+++++..-.+ + ...+..++.++...|++++|+..++++++ +.|+ ...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 3455666677777788888888887776532112 1 24677777778888888888888888887 6774 3666677
Q ss_pred HHHHHhcCC--------------hhhHHHHHHHHH
Q 002549 856 IIMYCRDCR--------------PEEGLSLMHEMR 876 (909)
Q Consensus 856 ~~~~~~~g~--------------~~~A~~~~~~~~ 876 (909)
+.+|...|+ +++|.+++++..
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~ 147 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI 147 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence 777777665 455666666655
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00046 Score=71.85 Aligned_cols=92 Identities=17% Similarity=0.036 Sum_probs=64.5
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHH
Q 002549 612 AYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYE 691 (909)
Q Consensus 612 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 691 (909)
.+...|+++.|+..|++++. +.|++..++..++.+|...|++++|+..++++++. .|.+...|..++.+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIEL-DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhCCHH
Confidence 34455666677777766666 56677777777777777777777777777777765 4556667777777777777777
Q ss_pred HHHHHHHHHHHcCCC
Q 002549 692 RARAVFNTMMRDGPS 706 (909)
Q Consensus 692 ~A~~~~~~~~~~~~~ 706 (909)
+|...|+++++.+|.
T Consensus 88 eA~~~~~~al~l~P~ 102 (356)
T PLN03088 88 TAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHHhCCC
Confidence 777777777775544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00035 Score=57.26 Aligned_cols=92 Identities=20% Similarity=0.190 Sum_probs=62.9
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCC
Q 002549 610 VVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGC 689 (909)
Q Consensus 610 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 689 (909)
...+...|++++|...+..+.. ..|++..++..++..+...+++++|.+.++.+.+. .+.+...+..++.++...|+
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-DPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHHHHh
Confidence 3344445555555555555544 34555566667777777778888888888877765 35556677788888888888
Q ss_pred HHHHHHHHHHHHHcC
Q 002549 690 YERARAVFNTMMRDG 704 (909)
Q Consensus 690 ~~~A~~~~~~~~~~~ 704 (909)
++.|...+....+..
T Consensus 84 ~~~a~~~~~~~~~~~ 98 (100)
T cd00189 84 YEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHHccC
Confidence 888888888887644
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00012 Score=55.34 Aligned_cols=63 Identities=19% Similarity=0.428 Sum_probs=47.1
Q ss_pred CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcC-ChhhHHHHHHHHHH
Q 002549 813 DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDC-RPEEGLSLMHEMRK 877 (909)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 877 (909)
+..+|..++..+...|++++|+..|+++++ +.|+. ..+..++.+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345677777777777888888888888887 67754 67777888888887 67888888777764
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0085 Score=58.38 Aligned_cols=201 Identities=10% Similarity=0.042 Sum_probs=115.8
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc--HHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHH
Q 002549 673 DRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDS--INGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLM 750 (909)
Q Consensus 673 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 750 (909)
+...+...+..+...|++++|.+.|+.+....|.+.... .-.++.++.+.+++++|+..++++.+.........+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 444444556666778999999999999988776642221 134456667777777777777777766433222222111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCH
Q 002549 751 LDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDF 830 (909)
Q Consensus 751 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 830 (909)
..+.+. .......+..... +.+ .........+|++.|+++++. -|++.- .
T Consensus 111 ~~g~~~---~~~~~~~~~~~~~--~~~----------~~rD~~~~~~A~~~~~~li~~--yP~S~y-------------a 160 (243)
T PRK10866 111 MRGLTN---MALDDSALQGFFG--VDR----------SDRDPQHARAAFRDFSKLVRG--YPNSQY-------------T 160 (243)
T ss_pred HHHHhh---hhcchhhhhhccC--CCc----------cccCHHHHHHHHHHHHHHHHH--CcCChh-------------H
Confidence 111110 0000000100000 000 000112245688888888873 566632 2
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHH--cCCCCChhhHHHHHHHHhccCCHHHHHHhh
Q 002549 831 KKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRK--LGLEPKLDTYKSLISAFGKQQQLEQAEELL 907 (909)
Q Consensus 831 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 907 (909)
++|......+.+. - ...-..++..|.+.|+|.-|..-++.+++ .+..........++.+|.+.|..++|..+.
T Consensus 161 ~~A~~rl~~l~~~---l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 161 TDATKRLVFLKDR---L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHHHH---H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3333322222220 0 02233778899999999999999999997 344444667778899999999999998865
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=71.48 Aligned_cols=151 Identities=11% Similarity=0.113 Sum_probs=89.6
Q ss_pred CCCChHhHHHHHHHHHH--c---CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccH
Q 002549 670 APVDRKVWNALIKAYAA--S---GCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISK 744 (909)
Q Consensus 670 ~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 744 (909)
.+.+...|...+++... . ++.+.|.++|+++++.+|. ....|..+..++.....+ .+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~---------------~~~~ 396 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQ---------------QPLD 396 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhc---------------CCcc
Confidence 56677788777766433 2 2377899999999997776 445555554443222111 1100
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 002549 745 SSILLMLDAFARSGNIFEVKKIYHGMKAAG-YFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKL 823 (909)
Q Consensus 745 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 823 (909)
.+++..+.+...+..... ...+...+..+.-.....|++++|...++++++ ..|+...|..++..
T Consensus 397 ------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~ 462 (517)
T PRK10153 397 ------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKV 462 (517)
T ss_pred ------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHH
Confidence 012223333333333211 122345555555555556777777777777776 45666677777777
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCChhhH
Q 002549 824 YTGIEDFKKTIQVYQEIQEADLQPDEDSF 852 (909)
Q Consensus 824 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 852 (909)
|...|+.++|.+.|+++.. ++|...+|
T Consensus 463 ~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 463 YELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 7777888888888888777 77765553
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00089 Score=58.34 Aligned_cols=104 Identities=9% Similarity=0.006 Sum_probs=87.5
Q ss_pred cCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Q 002549 632 KGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDS 711 (909)
Q Consensus 632 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 711 (909)
.|++++........+.-+...|++++|..+|.-+.-. .+.+...|..|+.++...+++++|+..|..+...++. |..+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p 107 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY-DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRP 107 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCc
Confidence 3466666667777888888999999999999988765 4667888889999999999999999999999887765 7777
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHh
Q 002549 712 INGLLQALIVDGRLNELYVVIQELQD 737 (909)
Q Consensus 712 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 737 (909)
......+|...|+...|...|....+
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 88889999999999999999988776
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.3e-05 Score=46.68 Aligned_cols=31 Identities=35% Similarity=0.725 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 002549 115 QVYNAMMGIYARNGRFQKVQELLDLMRKRGC 145 (909)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 145 (909)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0018 Score=59.72 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=78.0
Q ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHH
Q 002549 567 SKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPS--EDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVD 644 (909)
Q Consensus 567 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 644 (909)
....+..+...+...|++++|...|++.......+. ...+..+...+...|++++|...+.+++. ..|++...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence 444566666666677777777777777664332222 23455566666667777777777776666 45666666666
Q ss_pred HHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCc
Q 002549 645 IIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGR 724 (909)
Q Consensus 645 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 724 (909)
++.++...|+...+..-++.+.. .+++|.+.+++++..+|. + +..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p~-~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAPN-N---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCch-h---HHHHHHHHHhcCc
Confidence 67777666665554443333221 156777788887775443 2 4455555555544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0016 Score=62.67 Aligned_cols=105 Identities=18% Similarity=0.050 Sum_probs=82.1
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCcc
Q 002549 634 IPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASG---CYERARAVFNTMMRDGPSPTVD 710 (909)
Q Consensus 634 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~ 710 (909)
.+|++..-|..|+.+|...|+...|...|.++.+. .++++..+..+..++..+. ...++..+|+++++.++. ++.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ir 228 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIR 228 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHH
Confidence 57888888888888888888888888888888877 5667777777777655442 467788888888887776 777
Q ss_pred cHHHHHHHHHhcCchhhHHHHHHHHHhCCC
Q 002549 711 SINGLLQALIVDGRLNELYVVIQELQDMDF 740 (909)
Q Consensus 711 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 740 (909)
+...|...+.+.|++.+|...++.|.+...
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 777777888888888888888888877653
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00089 Score=69.41 Aligned_cols=119 Identities=16% Similarity=0.185 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 002549 255 DAVTYNSLLYAFAREGNVEKVKEISENMLKMG--FGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVL 332 (909)
Q Consensus 255 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 332 (909)
+......+++.+....+++.+..++-+..... ...-..|..++++.|.+.|..+.++++++.=...|+.||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 44445555555555555555555555554431 1111233345556666666666666666555555666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002549 333 IDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAK 373 (909)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (909)
++.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666665555554444444444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0003 Score=52.31 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=48.9
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002549 644 DIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPS 706 (909)
Q Consensus 644 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 706 (909)
.++..+...|++++|++.|+.+++. .|.+..++..++.++...|++++|...|+++++..|.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ-DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3567778888888888888888877 4667888888888888888888888888888876554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0014 Score=60.27 Aligned_cols=94 Identities=12% Similarity=0.009 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHH
Q 002549 745 SSILLMLDAFARSGNIFEVKKIYHGMKAAGYFP--TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSML 821 (909)
Q Consensus 745 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~ 821 (909)
..+..++..+...|++++|...|++.......| ...++..+...+...|++++|+..++++.+ ..|+. .++..++
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHH
Confidence 344555666667788888888888776542222 234677788888888888888888888876 34443 4566666
Q ss_pred HHhh-------ccCCHHHHHHHHHHH
Q 002549 822 KLYT-------GIEDFKKTIQVYQEI 840 (909)
Q Consensus 822 ~~~~-------~~g~~~~A~~~~~~~ 840 (909)
..+. ..|++++|+..+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 667766555444443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0019 Score=54.16 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=21.6
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCC-chHHHHHHHHhhhcCChHHHHHHHHHHH
Q 002549 615 KMDFPETAHFIADQAEKKGIPFED-LSIYVDIIDAYGRLKLWQKAESLVGCLR 666 (909)
Q Consensus 615 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 666 (909)
..|+.++|+.+|++++..|+.... ..++..++.++...|++++|..++++..
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444443333221 2233344444444444444444444443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0022 Score=53.77 Aligned_cols=97 Identities=19% Similarity=0.073 Sum_probs=71.5
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC--hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc--ccHHHH
Q 002549 640 SIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD--RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTV--DSINGL 715 (909)
Q Consensus 640 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l 715 (909)
.+.+.++.++-..|+.++|+.+|++.+..|.... ...+-.+..++...|++++|..+++......|.+.. .....+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 3566788889999999999999999998876544 446667788899999999999999999886554211 112223
Q ss_pred HHHHHhcCchhhHHHHHHHHH
Q 002549 716 LQALIVDGRLNELYVVIQELQ 736 (909)
Q Consensus 716 ~~~~~~~g~~~~A~~~~~~~~ 736 (909)
..++...|++++|++++-...
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 445667788888887776544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00028 Score=53.27 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=40.9
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcC-CHHHHHHHHHHHHHcC
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASG-CYERARAVFNTMMRDG 704 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 704 (909)
+..+..++..+...|++++|+..|+++++. .|.+..+|..++.+|...| ++++|++.++++++.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 344555666666666666666666666665 4555666666666666666 5666666666666543
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0025 Score=61.41 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=91.4
Q ss_pred chHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhcc---CCHHHHHHHHHHHHHcCCCCC-hhh
Q 002549 777 PTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGI---EDFKKTIQVYQEIQEADLQPD-EDS 851 (909)
Q Consensus 777 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~-~~~ 851 (909)
-|..-|..|...|...|+++.|...|.++.+ +.||. ..+..+..++..+ ....+|.+++++++. .+|+ ..+
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~ira 229 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRA 229 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHH
Confidence 3788999999999999999999999999987 55554 6777777765543 367889999999999 8995 588
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 002549 852 FNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAF 894 (909)
Q Consensus 852 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 894 (909)
...|+..++..|++.+|...++.|.+. .|..+.++.++...
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~~ 270 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHHH
Confidence 889999999999999999999999954 55556666666554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00018 Score=53.56 Aligned_cols=56 Identities=14% Similarity=0.299 Sum_probs=35.1
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 820 MLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
++..+...|++++|++.|+++++ ..|+. ..+..++.++...|++++|..+++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666666666666666666 55643 5666666666666666666666666653
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0012 Score=68.41 Aligned_cols=124 Identities=12% Similarity=0.061 Sum_probs=81.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 002549 286 GFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLS--GRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRT 363 (909)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 363 (909)
+.+.+......+++.+....+++.+..++.++... ....-..|..++++.|.+.|..++++.++..=..-|+.||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33556666677777777777777777777776654 1112233455777777777777777777777777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002549 364 YSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRF 409 (909)
Q Consensus 364 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 409 (909)
++.|+..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777776665555556655555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0044 Score=54.14 Aligned_cols=89 Identities=9% Similarity=-0.032 Sum_probs=74.8
Q ss_pred HHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCC
Q 002549 786 SGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCR 864 (909)
Q Consensus 786 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 864 (909)
..-+...|++++|+.+|+-+...+ .-|..-|..|+.+|...+++++|+..|..+.. +.+ |+..+.+.+.+|...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~--l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT--LLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cccCCCCccchHHHHHHHhCC
Confidence 344558899999999999987632 12445578888888888999999999999988 666 56889999999999999
Q ss_pred hhhHHHHHHHHHH
Q 002549 865 PEEGLSLMHEMRK 877 (909)
Q Consensus 865 ~~~A~~~~~~~~~ 877 (909)
.++|.+.|+....
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999985
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.53 E-value=9.1e-05 Score=45.21 Aligned_cols=28 Identities=43% Similarity=0.781 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 002549 223 TYNAMISVYGRCGLFEKAEQLFKELESK 250 (909)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (909)
+|++++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.023 Score=53.93 Aligned_cols=186 Identities=13% Similarity=0.128 Sum_probs=97.7
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC---hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD---RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGL 715 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 715 (909)
...+...+..+...|++.+|+..|+.+... .|.+ ..+.-.++.++.+.|+++.|...+++.++..|......+...
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 344555666677788888888888887765 3322 345556677788888888888888888887666333333333
Q ss_pred HHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCch
Q 002549 716 LQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRV 795 (909)
Q Consensus 716 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 795 (909)
+.+.+......... ......+...+|...|+.++ ..|..+...
T Consensus 84 ~~g~~~~~~~~~~~----------------------~~~~D~~~~~~A~~~~~~li---------------~~yP~S~y~ 126 (203)
T PF13525_consen 84 MLGLSYYKQIPGIL----------------------RSDRDQTSTRKAIEEFEELI---------------KRYPNSEYA 126 (203)
T ss_dssp HHHHHHHHHHHHHH-----------------------TT---HHHHHHHHHHHHHH---------------HH-TTSTTH
T ss_pred HHHHHHHHhCccch----------------------hcccChHHHHHHHHHHHHHH---------------HHCcCchHH
Confidence 33222111110000 00111122233444444333 334444555
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChhhH
Q 002549 796 RDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE----DSFNTLIIMYCRDCRPEEG 868 (909)
Q Consensus 796 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A 868 (909)
.+|...+..+.+. + ..--..++..|.+.|.+..|..-++.+++ --|++ .+...++.+|.+.|..+.|
T Consensus 127 ~~A~~~l~~l~~~-l---a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~--~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 127 EEAKKRLAELRNR-L---AEHELYIARFYYKRGKYKAAIIRFQYVIE--NYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHH-H---HHHHHHHHHHHHCTT-HHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHH-H---HHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 5555555544320 0 00112245567778888888888888887 45653 3556777788888876644
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0042 Score=67.65 Aligned_cols=118 Identities=9% Similarity=-0.115 Sum_probs=74.0
Q ss_pred hhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhc--------CChHHHHHHHHHHHhc-CCCCChHhHHHHHHHHHHcCC
Q 002549 619 PETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRL--------KLWQKAESLVGCLRQR-CAPVDRKVWNALIKAYAASGC 689 (909)
Q Consensus 619 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 689 (909)
.+.|+.+|+++++ ++|+...++..++.++... .++..+.+..++.... ..+.++.++.++...+...|+
T Consensus 358 ~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 358 LNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 4456666666665 5666655555554444322 1233444444443332 134456677777766667788
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCC
Q 002549 690 YERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDF 740 (909)
Q Consensus 690 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 740 (909)
+++|...++++++.+ |+...|..++.++...|++++|.+.+++....+.
T Consensus 436 ~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 436 TDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 888888888888855 4566777777878888888888888877776553
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0023 Score=58.32 Aligned_cols=114 Identities=21% Similarity=0.356 Sum_probs=71.3
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 002549 101 ETFMRAESAVDDTVQVYNAMMGIYARN-----GRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLN 175 (909)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~ 175 (909)
..|.++... ..+-.+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.||+.+=+ |.+.+ ..+|+
T Consensus 35 ~~f~~~~~~-~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp---~n~fQ 109 (228)
T PF06239_consen 35 ELFERAPGQ-AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVP---RNFFQ 109 (228)
T ss_pred HHHHHHhhc-cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCccc---ccHHH
Confidence 344444222 34666677777766643 6666677778899999999999999999998865 33321 12222
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 002549 176 EVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGL 236 (909)
Q Consensus 176 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 236 (909)
.+-- -|- .+-+-|+.++++|...|+.||..++..++..|++.+.
T Consensus 110 ~~F~---------------hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFM---------------HYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhc---------------cCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2211 111 2345667777777777777777777777777665544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0027 Score=50.82 Aligned_cols=83 Identities=12% Similarity=0.242 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCChHHHHHHHHHHHHcCCCCc------hHHHHHHHHHHHCCCCCCHHH
Q 002549 116 VYNAMMGIYARNGRFQKVQELLDLMRKRGC-EPDLVSFNTLINARLRSGAMVP------NLGVDLLNEVRRSGLRPDIIT 188 (909)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~ 188 (909)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++...-.. -..+.+++.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445566677777999999999999999999 8999999999999887753111 123455666666666666666
Q ss_pred HHHHHHHHHh
Q 002549 189 YNTIISACSR 198 (909)
Q Consensus 189 ~~~li~~~~~ 198 (909)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 6666665543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.019 Score=60.34 Aligned_cols=99 Identities=14% Similarity=0.066 Sum_probs=55.0
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQA 718 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 718 (909)
......++..+.+...+.-|.++|.++-.. .+++......++|.+|..+.++.-+ --...|.-..+.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe----~~~dVy~pyaqw 813 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE----FKDDVYMPYAQW 813 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc----ccccccchHHHH
Confidence 333444445555555666666666665432 2455666777888888877777633 222233334444
Q ss_pred HHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002549 719 LIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA 772 (909)
Q Consensus 719 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 772 (909)
+++..+++||.+ +|-++|+-.+|..+++++..
T Consensus 814 LAE~DrFeEAqk----------------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 814 LAENDRFEEAQK----------------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhhHHHHHH----------------------HHHHhcchHHHHHHHHHhhh
Confidence 555555555444 34445666666666666654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00028 Score=53.17 Aligned_cols=58 Identities=19% Similarity=0.347 Sum_probs=40.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhH
Q 002549 826 GIEDFKKTIQVYQEIQEADLQPD-EDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTY 887 (909)
Q Consensus 826 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 887 (909)
..|++++|++.|+++++ ..|+ ......++.+|.+.|++++|.++++++... .|+...|
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHH
T ss_pred hccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHH
Confidence 45777888888888877 6774 466667788888888888888888777743 4553333
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.076 Score=49.68 Aligned_cols=131 Identities=9% Similarity=0.003 Sum_probs=75.8
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH----
Q 002549 641 IYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLL---- 716 (909)
Q Consensus 641 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~---- 716 (909)
+.+.++..+...|.+.-...++.++++...+.++.....|+++-.+.||.+.|...|++..+...+.|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4455666666777777777777777776556777777788887778888888888888665544443444444333
Q ss_pred -HHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002549 717 -QALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA 772 (909)
Q Consensus 717 -~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 772 (909)
..|.-++++-+|...+.++...+ +.++...+.-.-+..-.|+..+|.+..+.+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22334455555555555554433 11222222222222334555666666666555
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.002 Score=63.08 Aligned_cols=94 Identities=11% Similarity=0.071 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH----HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC----hhhH
Q 002549 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL----SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD----EDSF 852 (909)
Q Consensus 781 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~ 852 (909)
.|...+..+.+.|++++|+..|+.+++ ..|+. ..+.-++.+|...|++++|+..|+++++ ..|+ ..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~--~yP~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK--NYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhHHH
Confidence 344444444556777777777777776 34544 3566677777778888888888888877 4554 3456
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHc
Q 002549 853 NTLIIMYCRDCRPEEGLSLMHEMRKL 878 (909)
Q Consensus 853 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 878 (909)
..++.++...|++++|.++|+++.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66777777788888888888887743
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.054 Score=57.20 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHh
Q 002549 602 SEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQ 667 (909)
Q Consensus 602 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 667 (909)
+.+++..+...+.+...+--|.++|..+-. ...+.+...+.++|++|..+-++..+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcc
Confidence 344455555555555556666666655432 23455666777777777777766554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0039 Score=49.94 Aligned_cols=71 Identities=23% Similarity=0.407 Sum_probs=33.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002549 301 YGKQGQHDVALQLYRDMKLSGR-NPDVVTYTVLIDSLGKAN--------KISEAANVMSEMLDASVKPTLRTYSALICGY 371 (909)
Q Consensus 301 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 371 (909)
+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..+|+.++..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3333555555555555555554 455555555544444321 1223444455555555555555555555444
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0059 Score=61.20 Aligned_cols=94 Identities=16% Similarity=0.096 Sum_probs=40.9
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhh-cCChHHHHHHHHHHHhcCCCCChHhHHHHHHHH
Q 002549 606 YRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGR-LKLWQKAESLVGCLRQRCAPVDRKVWNALIKAY 684 (909)
Q Consensus 606 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 684 (909)
|..++....+.+..+.|+.+|.++.+ ..+....+|...+..-.. .++.+.|..+|+..++. ++.+...|...+..+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 44444444444445555555555542 122233444444444222 23333355555544444 444444444444444
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 002549 685 AASGCYERARAVFNTMMR 702 (909)
Q Consensus 685 ~~~g~~~~A~~~~~~~~~ 702 (909)
...|+.+.|..+|++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~ 98 (280)
T PF05843_consen 81 IKLNDINNARALFERAIS 98 (280)
T ss_dssp HHTT-HHHHHHHHHHHCC
T ss_pred HHhCcHHHHHHHHHHHHH
Confidence 444555555555555443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.085 Score=49.39 Aligned_cols=135 Identities=11% Similarity=0.048 Sum_probs=79.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC----CCchHHHHHH
Q 002549 571 YESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPF----EDLSIYVDII 646 (909)
Q Consensus 571 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~ 646 (909)
.+.++.++.-.|.+.-.+.++++.++...+-++.....+...-.+.|+.+.|..+++...+..-.. ....+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 456666666677777777777777776555566666666666677777777777777554421111 1233444455
Q ss_pred HHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002549 647 DAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPS 706 (909)
Q Consensus 647 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 706 (909)
..|.-++++.+|...+.+++.. .+.++..-|.-+-+..-.|+..+|++..+.|....|.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~-D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRM-DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hheecccchHHHHHHHhhcccc-CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 5556666666666666666554 3444444444444444456666666666666665444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0058 Score=59.92 Aligned_cols=90 Identities=10% Similarity=-0.023 Sum_probs=59.1
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCC---chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC---hHhHHHHHHHHHHc
Q 002549 614 CKMDFPETAHFIADQAEKKGIPFED---LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD---RKVWNALIKAYAAS 687 (909)
Q Consensus 614 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 687 (909)
.+.|++++|+..|+..++ ..|++ +.++..++.+|...|++++|...|+.+++. .|.+ ..++..++.++...
T Consensus 154 ~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-YPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCcchhHHHHHHHHHHHHc
Confidence 334555555555555554 33444 456777788888888888888888887765 3332 44455556677778
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 002549 688 GCYERARAVFNTMMRDGPS 706 (909)
Q Consensus 688 g~~~~A~~~~~~~~~~~~~ 706 (909)
|+++.|..+|+++++..|.
T Consensus 231 g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 231 GDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred CCHHHHHHHHHHHHHHCcC
Confidence 8888888888888876655
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.013 Score=55.58 Aligned_cols=189 Identities=12% Similarity=0.110 Sum_probs=95.1
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc--ccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHH
Q 002549 674 RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTV--DSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLML 751 (909)
Q Consensus 674 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 751 (909)
...+...+..+...|++++|...|+.+....|.... .....++.++.+.|++++|...++++++.-.......+....
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 344455566667778888888888888777655221 223344455555556666655555555432211111111100
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHH
Q 002549 752 DAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFK 831 (909)
Q Consensus 752 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 831 (909)
.+. ..+..... . +......+...+|+..|+++++. -|++. -..
T Consensus 85 ~g~----------~~~~~~~~------~------~~~~~D~~~~~~A~~~~~~li~~--yP~S~-------------y~~ 127 (203)
T PF13525_consen 85 LGL----------SYYKQIPG------I------LRSDRDQTSTRKAIEEFEELIKR--YPNSE-------------YAE 127 (203)
T ss_dssp HHH----------HHHHHHHH------H------H-TT---HHHHHHHHHHHHHHHH---TTST-------------THH
T ss_pred HHH----------HHHHhCcc------c------hhcccChHHHHHHHHHHHHHHHH--CcCch-------------HHH
Confidence 000 00110000 0 00012233455667777776653 34442 223
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----hhhHHHHHHHHhccCCHHHHHH
Q 002549 832 KTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK----LDTYKSLISAFGKQQQLEQAEE 905 (909)
Q Consensus 832 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 905 (909)
+|......+.+. - ...-..++..|.+.|.+..|..-++.+++. .|+ ......++.+|.+.|..+.|..
T Consensus 128 ~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 128 EAKKRLAELRNR---L-AEHELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 333333332220 0 022345788999999999999999999974 333 3456778899999999986653
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0018 Score=49.58 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=43.9
Q ss_pred HHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 002549 822 KLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKL 878 (909)
Q Consensus 822 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 878 (909)
..|...+++++|++.++++++ +.|+. ..+...+.++.+.|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456777888888888888888 77854 67778888888888888888888888843
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.25 Score=48.90 Aligned_cols=222 Identities=16% Similarity=0.130 Sum_probs=110.8
Q ss_pred CChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhc-CCCCChHhHHHHHHHHHHcCCHHHHHH
Q 002549 617 DFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQR-CAPVDRKVWNALIKAYAASGCYERARA 695 (909)
Q Consensus 617 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 695 (909)
+....+...+......................+...+.+..+...+...... ..+.....+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444432111112344444555555555555555555554431 123334444444455555555555555
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002549 696 VFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGY 775 (909)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 775 (909)
.+.......+.+ ......... ..+...|+++.|...+.+......
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLAL----------------------------------GALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHH----------------------------------HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 555554433332 111111111 044555555555555555543110
Q ss_pred --CchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCC--HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC-hh
Q 002549 776 --FPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPD--LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-ED 850 (909)
Q Consensus 776 --~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~ 850 (909)
......+......+...++.+++...+.++.. ..|+ ...+..+...+...+++++|...+.+... ..|+ ..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 237 (291)
T COG0457 162 ELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAE 237 (291)
T ss_pred CccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHH
Confidence 01222233333335556666777777766665 2333 45566666666666777777777777776 5554 34
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 851 SFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 851 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
.+..+...+...|.++++...+.+..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 238 ALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555667777777766664
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0013 Score=49.37 Aligned_cols=64 Identities=22% Similarity=0.366 Sum_probs=46.9
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHH
Q 002549 91 GKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLI 156 (909)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 156 (909)
.+.|+++.|.+.|.++....|.+..++..+..+|.+.|++++|..+++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 45677888888888877777778888888888888888888888888887766 45544444443
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.012 Score=59.10 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002549 223 TYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAR-EGNVEKVKEISENMLKMGFGKDEMTYNTIIHMY 301 (909)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (909)
+|..+++..-+.+..+.|..+|.+..+.+. .+...|......-.. .++.+.|.++|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 455555555555555555555555553321 122223222222112 34444455555555543 234455555555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002549 302 GKQGQHDVALQLYRDMKLSGRNPDVV----TYTVLIDSLGKANKISEAANVMSEMLD 354 (909)
Q Consensus 302 ~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~ 354 (909)
.+.|+.+.|..+|++.... .|... .|...+..-.+.|+.+.+.++..++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555443 12222 444444444444444444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.003 Score=64.85 Aligned_cols=97 Identities=19% Similarity=0.030 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHH----hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHH
Q 002549 778 TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLS----IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFN 853 (909)
Q Consensus 778 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 853 (909)
+...++.+..+|.+.|++++|+..|+++++ +.|+.. +|..+..+|...|+.++|++.++++++ +.+. .|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe--lsn~--~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR--DYNL--KFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcch--hHH
Confidence 567788888888888888888888888887 567653 478888888888888888888888888 3211 121
Q ss_pred HHHH--HHHhcCChhhHHHHHHHHHHcCC
Q 002549 854 TLII--MYCRDCRPEEGLSLMHEMRKLGL 880 (909)
Q Consensus 854 ~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 880 (909)
.+.. .+....+..+..++++.+.+.|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 11222334456666666666443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.35 Score=47.75 Aligned_cols=228 Identities=14% Similarity=0.089 Sum_probs=150.0
Q ss_pred cccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHH
Q 002549 581 NERFAEASQVFSDMRFYNIEP-SEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAE 659 (909)
Q Consensus 581 ~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 659 (909)
.+....+...+.......... ...........+...+....+...+.........+.....+...+..+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 356666777777665533221 3567777888888999999999988887653245666778888899999999999999
Q ss_pred HHHHHHHhcCCCCChHhHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCC--CCcccHHHHHHHHHhcCchhhHHHHHHHHH
Q 002549 660 SLVGCLRQRCAPVDRKVWNALIK-AYAASGCYERARAVFNTMMRDGPS--PTVDSINGLLQALIVDGRLNELYVVIQELQ 736 (909)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 736 (909)
+.+......... +......... ++...|+++.|...+.++....+. .....+.....
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 175 (291)
T COG0457 116 ELLEKALALDPD-PDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGA------------------- 175 (291)
T ss_pred HHHHHHHcCCCC-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhh-------------------
Confidence 999999875322 2233333344 788999999999999999663321 11111111111
Q ss_pred hCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCC-HH
Q 002549 737 DMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPD-LS 815 (909)
Q Consensus 737 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~ 815 (909)
.+...++.+.+...+..............+..+...+...+.+++|...+..... ..|+ ..
T Consensus 176 ----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 237 (291)
T COG0457 176 ----------------LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAE 237 (291)
T ss_pred ----------------HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHH
Confidence 1444556666666666665532111345566666777777778888888888776 3444 34
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC
Q 002549 816 IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD 848 (909)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 848 (909)
.+..+...+...+..+++...+.+..+ ..|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 268 (291)
T COG0457 238 ALYNLALLLLELGRYEEALEALEKALE--LDPD 268 (291)
T ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHHH--hCcc
Confidence 455555555556678888888888887 5665
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.61 Score=50.20 Aligned_cols=86 Identities=16% Similarity=0.145 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCC--------CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 002549 358 KPTLRTYSALICGYAKAGNRLEAEKTFYCMRR-SGIRP--------DHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFT 428 (909)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 428 (909)
.|....|..+.......-.++.|+..|-+... .|++. +...-.+=+.+| -|++++|.++|-+|-.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 46667777777666666667777766655543 22211 111111112222 377888888777765431
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHH
Q 002549 429 PDQALYEIMIGVLGRENKGEEIRKVV 454 (909)
Q Consensus 429 ~~~~~~~~ll~~~~~~g~~~~a~~~~ 454 (909)
..+..+.+.|++-.+.+++
T Consensus 765 -------LAielr~klgDwfrV~qL~ 783 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLI 783 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHH
Confidence 1233445555555555444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.19 Score=46.69 Aligned_cols=207 Identities=14% Similarity=0.183 Sum_probs=107.9
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQA 718 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 718 (909)
.+.|...+..|...+++++|...+.++.+. .+.+...|.+ ..-++.|.-+.+++.+. .--+..++--...
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 334445555566666666666655555432 2222222221 11233333343333321 1012223333444
Q ss_pred HHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C--CCchHHHHHHHHHHHhccC
Q 002549 719 LIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAA---G--YFPTMYLYRVMSGLFCKGK 793 (909)
Q Consensus 719 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~--~~p~~~~~~~l~~~~~~~g 793 (909)
|.+.|.++.|...+++.-+ ....-++++|+++|++...- + ..-....+......|.+..
T Consensus 101 Y~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 5555555555555444322 22345677777777776541 1 1123456667777788888
Q ss_pred chHHHHHHHHHHH----HCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcC--CCC-ChhhHHHHHHHHHhcCCh
Q 002549 794 RVRDVEAMVSEMK----EAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEAD--LQP-DEDSFNTLIIMYCRDCRP 865 (909)
Q Consensus 794 ~~~~A~~~~~~~~----~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p-~~~~~~~l~~~~~~~g~~ 865 (909)
++++|-..+.+-. +..-.|+. ..+.+.+-.|....++..|...++.--+.+ ..| +..+..+|+.+|- .|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCH
Confidence 8888766655432 11112333 235555666667778899988888866621 112 3466667777765 6776
Q ss_pred hhHHHHH
Q 002549 866 EEGLSLM 872 (909)
Q Consensus 866 ~~A~~~~ 872 (909)
+++.+++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 7665554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.013 Score=53.46 Aligned_cols=104 Identities=18% Similarity=0.310 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 002549 254 PDAVTYNSLLYAFAR-----EGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVT 328 (909)
Q Consensus 254 ~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 328 (909)
.+..+|..++..|.+ .|.++-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 366777777777763 46777777778888888888888888888887643 2221 1111111110
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002549 329 YTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGN 376 (909)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 376 (909)
-.-.+-+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 114 --------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 --------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred --------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0123445677888888888888888888888887766554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.012 Score=57.32 Aligned_cols=231 Identities=8% Similarity=-0.010 Sum_probs=114.9
Q ss_pred HHHhhhcCChHHHHHHHHHHHhcCCC--CChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC---cccHHHHHHH
Q 002549 646 IDAYGRLKLWQKAESLVGCLRQRCAP--VDRKVWNALIKAYAASGCYERARAVFNTMMRDG--PSPT---VDSINGLLQA 718 (909)
Q Consensus 646 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~---~~~~~~l~~~ 718 (909)
+.-+....+.+.|+....+.+.+-.. ....++..+..+.+..|.+++++..--.-++.. .+.+ ..+|..+.++
T Consensus 13 g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~ 92 (518)
T KOG1941|consen 13 GLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARS 92 (518)
T ss_pred HHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777666543110 112344555666666777666554433222211 1101 1223334444
Q ss_pred HHhcCchhhHHHHHHHHHhC-CCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCc--hHHHHHHHHHHH
Q 002549 719 LIVDGRLNELYVVIQELQDM-DFKI---SKSSILLMLDAFARSGNIFEVKKIYHGMKAAG---YFP--TMYLYRVMSGLF 789 (909)
Q Consensus 719 ~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~p--~~~~~~~l~~~~ 789 (909)
+.+.-++.+++.+-..-... |..| ......++..++.-.+-++++++.|+...+.- -.| ...++..|...|
T Consensus 93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf 172 (518)
T KOG1941|consen 93 NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLF 172 (518)
T ss_pred HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHH
Confidence 44444444444444433322 2222 12333445555666666677777776666511 012 234566666677
Q ss_pred hccCchHHHHHHHHHHHHC--CCCCCHH--hH-----HHHHHHhhccCCHHHHHHHHHHHHH----cCCCCC-hhhHHHH
Q 002549 790 CKGKRVRDVEAMVSEMKEA--GFKPDLS--IW-----NSMLKLYTGIEDFKKTIQVYQEIQE----ADLQPD-EDSFNTL 855 (909)
Q Consensus 790 ~~~g~~~~A~~~~~~~~~~--~~~p~~~--~~-----~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l 855 (909)
.+..++++|+-+..++.+- .+..+.+ .| ..+.-++...|.+-.|.+..+++.+ .|-.|- ......+
T Consensus 173 ~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~ 252 (518)
T KOG1941|consen 173 AQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCF 252 (518)
T ss_pred HHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 7777777776666665431 1221111 12 2233455666666666666666544 232331 2445566
Q ss_pred HHHHHhcCChhhHHHHHHHHH
Q 002549 856 IIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 856 ~~~~~~~g~~~~A~~~~~~~~ 876 (909)
++.|-..|+.+.|+.-|+.+.
T Consensus 253 aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 253 ADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHhcccHhHHHHHHHHHH
Confidence 666666677666666666654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00096 Score=51.86 Aligned_cols=63 Identities=21% Similarity=0.425 Sum_probs=40.8
Q ss_pred HhHHHHHHHhhccCCHHHHHHHHHHHHHc--CCC---CC-hhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 815 SIWNSMLKLYTGIEDFKKTIQVYQEIQEA--DLQ---PD-EDSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 815 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
.+++.++..|...|++++|+..|+++++. ... |+ ..++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666667777777777777777777652 011 12 24566777788888888888887777653
|
... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.29 Score=44.60 Aligned_cols=97 Identities=19% Similarity=0.119 Sum_probs=70.9
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 002549 642 YVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIV 721 (909)
Q Consensus 642 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 721 (909)
+..-+..|-..|-+.-|+--|.+.+.. .|.-+.++|.|+--+...|+++.|.+.|+...+.+|.-+....| -..++.-
T Consensus 68 ~fERGvlYDSlGL~~LAR~DftQaLai-~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN-Rgi~~YY 145 (297)
T COG4785 68 LFERGVLYDSLGLRALARNDFSQALAI-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN-RGIALYY 145 (297)
T ss_pred HHHhcchhhhhhHHHHHhhhhhhhhhc-CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc-cceeeee
Confidence 334455677778888888888888776 46668899999999999999999999999999987763322222 2233445
Q ss_pred cCchhhHHHHHHHHHhCCC
Q 002549 722 DGRLNELYVVIQELQDMDF 740 (909)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~ 740 (909)
-|++.-|.+-+.+.-+.+.
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~ 164 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDP 164 (297)
T ss_pred cCchHhhHHHHHHHHhcCC
Confidence 6888888887777766653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.16 Score=51.88 Aligned_cols=82 Identities=13% Similarity=-0.017 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHH----HHHHHH----HHHHHcC-CCC--ChhhHHHHHHHHHhcC
Q 002549 795 VRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFK----KTIQVY----QEIQEAD-LQP--DEDSFNTLIIMYCRDC 863 (909)
Q Consensus 795 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~----~~~~~~~-~~p--~~~~~~~l~~~~~~~g 863 (909)
.++|++.|.+.-+ ..||..+-.+++..+...|... +..++. ..+.++| ..+ |-..+.++..+..-.|
T Consensus 242 ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~ 319 (374)
T PF13281_consen 242 LDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAG 319 (374)
T ss_pred HHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcC
Confidence 5667777766655 3455544333333333333211 112222 1122222 222 2244456667777777
Q ss_pred ChhhHHHHHHHHHHc
Q 002549 864 RPEEGLSLMHEMRKL 878 (909)
Q Consensus 864 ~~~~A~~~~~~~~~~ 878 (909)
++++|.+.+++|.+.
T Consensus 320 d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 320 DYEKAIQAAEKAFKL 334 (374)
T ss_pred CHHHHHHHHHHHhhc
Confidence 778888877777754
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0035 Score=47.92 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=37.0
Q ss_pred HHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002549 647 DAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPS 706 (909)
Q Consensus 647 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 706 (909)
..|...+++++|.++++.+++. .|.++..|...+.++...|++++|.+.|++.++.+|.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 3455666666666666666655 4556666666666666666666666666666665443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.98 Score=50.09 Aligned_cols=177 Identities=14% Similarity=0.130 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 002549 259 YNSLLYAFAREGNVEKVKEISENMLKMGFGKD--EMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSL 336 (909)
Q Consensus 259 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 336 (909)
...-|..+++...++.|..+... .+..++ ........+-+.+.|++++|...|-+-...- .| ..+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHHh
Confidence 44556666666667766665543 222222 1122233344456777777777766654321 12 2234555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHhHH
Q 002549 337 GKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGI-RPDHLAYSVMLDIFLRFNETNKA 415 (909)
Q Consensus 337 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 415 (909)
....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|. ..|. ...+..+.+.+-.++|
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~---e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDV---ETALEILRKSNYLDEA 482 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeH---HHHHHHHHHhChHHHH
Confidence 5666666666777777777654 44445667777777777777666655443 221 1122 2344555555666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 002549 416 MMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDM 457 (909)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 457 (909)
..+-..... .......+ +...+++++|.+++..+
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 555444422 22222222 33446677777766543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.056 Score=48.26 Aligned_cols=115 Identities=23% Similarity=0.388 Sum_probs=70.7
Q ss_pred HHhcCCHHHHHHHHHHHHh--cC-CCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCH
Q 002549 754 FARSGNIFEVKKIYHGMKA--AG-YFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDF 830 (909)
Q Consensus 754 ~~~~g~~~~a~~~~~~~~~--~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 830 (909)
....|+.+.+...++++.. .| +-|+... ..........++... ..+...++..+...|++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY-------LDALERLAEALLEAGDY 78 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-H
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCH
Confidence 3456677777777777775 12 2223211 111222222222221 12345566677788999
Q ss_pred HHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCChhhH
Q 002549 831 KKTIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCRPEEGLSLMHEMRK-----LGLEPKLDTY 887 (909)
Q Consensus 831 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 887 (909)
++|+..+++++. ..| |...+..++.+|...|+..+|.+.|+++.+ .|+.|++.+-
T Consensus 79 ~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 79 EEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 999999999999 888 457888999999999999999999988865 5889987664
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.049 Score=56.34 Aligned_cols=113 Identities=14% Similarity=0.107 Sum_probs=68.0
Q ss_pred ChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHH
Q 002549 654 LWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQ 733 (909)
Q Consensus 654 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 733 (909)
...+|.+..+++.+. .+.|+.+...++.+....++++.|...|+++...+|+ ...+|......+.-.|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAvel-d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDI-TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344566666666666 4567777777777777777777777788777776665 55666666666667777777777777
Q ss_pred HHHhCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002549 734 ELQDMDFKIS-KSSILLMLDAFARSGNIFEVKKIYHG 769 (909)
Q Consensus 734 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 769 (909)
+..+....-- .......++.|+.. -+++|+++|-+
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 7555432111 22222233344433 34555555443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.022 Score=57.27 Aligned_cols=95 Identities=12% Similarity=0.147 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHH-HHH
Q 002549 779 MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFN-TLI 856 (909)
Q Consensus 779 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~ 856 (909)
..+++.+..++.+.+++.+|++..++.++ +.| |.-...--+.+|...|+++.|+..|+++++ +.|++.... .++
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLE--LDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELI 332 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 34677888899999999999999999998 445 445666678889999999999999999999 999875444 555
Q ss_pred HHHHhcCCh-hhHHHHHHHHHH
Q 002549 857 IMYCRDCRP-EEGLSLMHEMRK 877 (909)
Q Consensus 857 ~~~~~~g~~-~~A~~~~~~~~~ 877 (909)
.+--+...+ +...++|..|..
T Consensus 333 ~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 333 KLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 555444444 445788888875
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.05 Score=56.31 Aligned_cols=160 Identities=9% Similarity=0.087 Sum_probs=97.3
Q ss_pred ccH--HHHHHHHHhc-----CchhhHHHHHHHHHhC-CCCcc-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 002549 710 DSI--NGLLQALIVD-----GRLNELYVVIQELQDM-DFKIS-KSSILLMLDAFAR---------SGNIFEVKKIYHGMK 771 (909)
Q Consensus 710 ~~~--~~l~~~~~~~-----g~~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 771 (909)
..| ...+++.... .....|+.+|.+.... ...|+ ...|..+..++.. ..+..+|.++.++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554432 2346677888888722 33444 3344444433321 123455666666666
Q ss_pred hcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-
Q 002549 772 AAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE- 849 (909)
Q Consensus 772 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~- 849 (909)
+.+ .-|......++.++.-.|+++.|..+|+++.. +.||. .+|......+...|+.++|.+.+++.++ ++|..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~ 406 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRR 406 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhh
Confidence 644 23566666677767777778888888888876 56776 5666666677777888888888888888 78843
Q ss_pred --hhHHHHHHHHHhcCChhhHHHHHHHH
Q 002549 850 --DSFNTLIIMYCRDCRPEEGLSLMHEM 875 (909)
Q Consensus 850 --~~~~~l~~~~~~~g~~~~A~~~~~~~ 875 (909)
......++.|+.. ..++|+++|-+-
T Consensus 407 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 407 KAVVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 2233344466654 347777776553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.00095 Score=51.90 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHc----C-CCCC-hhhHHHHHHHHhccCCHHHHHHhhcC
Q 002549 850 DSFNTLIIMYCRDCRPEEGLSLMHEMRKL----G-LEPK-LDTYKSLISAFGKQQQLEQAEELLKS 909 (909)
Q Consensus 850 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 909 (909)
.++..++.+|...|++++|++++++..+. | ..|+ ..++..++..+...|++++|.+++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 67889999999999999999999999962 2 1222 55788999999999999999998863
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.011 Score=60.77 Aligned_cols=64 Identities=5% Similarity=-0.027 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH----HHHHHHHHHHhccCchHHHHHHHHHHHH
Q 002549 742 ISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTM----YLYRVMSGLFCKGKRVRDVEAMVSEMKE 807 (909)
Q Consensus 742 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 807 (909)
.+...+..+..+|.+.|++++|+..|++.++. .|+. ..|..+..+|.+.|++++|++.++++++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33567777888899999999999999998874 3553 3588888899999999999999999887
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.86 Score=46.54 Aligned_cols=94 Identities=13% Similarity=0.194 Sum_probs=68.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002549 311 LQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRS 390 (909)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 390 (909)
+++-+++++. +.|..+|-.||.-|..+|.+++..+++++|... .+--..+|..-+.+-...+++...+.+|.+.+..
T Consensus 29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 29 LRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 3555666654 567788999999999999999999999998753 1223456777777777788899999999888875
Q ss_pred CCCCCHHHHHHHHHHHHHc
Q 002549 391 GIRPDHLAYSVMLDIFLRF 409 (909)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~~ 409 (909)
.. +...|...+...-+.
T Consensus 106 ~l--~ldLW~lYl~YIRr~ 122 (660)
T COG5107 106 SL--NLDLWMLYLEYIRRV 122 (660)
T ss_pred hc--cHhHHHHHHHHHHhh
Confidence 43 466666666554443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.14 Score=52.31 Aligned_cols=157 Identities=13% Similarity=0.079 Sum_probs=94.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhc---cCchHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 002549 750 MLDAFARSGNIFEVKKIYHGMKAA---GYFPTMYLYRVMSGLFCK---GKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKL 823 (909)
Q Consensus 750 l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 823 (909)
++-.|....+++.-.++.+.+... .+.-+..+--.++-++-+ .|+.++|++++..++...-.++..++..++..
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333455666666666666666542 111122333344445555 67777777777665444445566666666665
Q ss_pred hhc---------cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH--------HcC---CCCC
Q 002549 824 YTG---------IEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMR--------KLG---LEPK 883 (909)
Q Consensus 824 ~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~---~~p~ 883 (909)
|.. ...+++|+..|.+.-+ ++|+..+=.+++..+...|.-.+...-+++.. +.| -..+
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 532 1248999999999999 78877655566666666665333322111111 222 2334
Q ss_pred hhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 884 LDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 884 ~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
-..+.++..+..-.|+.++|.+.++
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e 329 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAE 329 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566788999999999999988765
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.021 Score=55.20 Aligned_cols=161 Identities=11% Similarity=0.020 Sum_probs=113.3
Q ss_pred HhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhccCchH
Q 002549 720 IVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAA---GYFPTMYLYRVMSGLFCKGKRVR 796 (909)
Q Consensus 720 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~ 796 (909)
...|+..+|...++++.+.- +.|-..+.-.-++|.-.|+.+.-...++++... +++...++-..+..++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35788888888888887654 555566666677888889888888888888752 43334555566777788999999
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHhcCChhhHHHHH
Q 002549 797 DVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP----DEDSFNTLIIMYCRDCRPEEGLSLM 872 (909)
Q Consensus 797 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~ 872 (909)
+|++.-++..+-+ +.|...-.+....+-..|+..++.++.++-... .+- -+..|-+.+-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999998888732 335677777777888888999998887665431 111 1234556666777778899999998
Q ss_pred HHHHHcCCCCC
Q 002549 873 HEMRKLGLEPK 883 (909)
Q Consensus 873 ~~~~~~~~~p~ 883 (909)
++-.-..+..+
T Consensus 271 D~ei~k~l~k~ 281 (491)
T KOG2610|consen 271 DREIWKRLEKD 281 (491)
T ss_pred HHHHHHHhhcc
Confidence 76554334444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.66 Score=44.17 Aligned_cols=81 Identities=20% Similarity=0.132 Sum_probs=53.3
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC---hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD---RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGL 715 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 715 (909)
+..+..-+......|+|++|.+.|+.+... .|-+ ..+.-.++.++-+.+++++|+..+++-++..|......|..-
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 344455555666778888888888877654 3433 344445566677778888888888888887766555556665
Q ss_pred HHHHH
Q 002549 716 LQALI 720 (909)
Q Consensus 716 ~~~~~ 720 (909)
+.+++
T Consensus 113 lkgLs 117 (254)
T COG4105 113 LKGLS 117 (254)
T ss_pred HHHHH
Confidence 55554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.46 Score=46.92 Aligned_cols=56 Identities=7% Similarity=-0.008 Sum_probs=30.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----cCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHH
Q 002549 750 MLDAFARSGNIFEVKKIYHGMKA----AGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEM 805 (909)
Q Consensus 750 l~~~~~~~g~~~~a~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 805 (909)
+.-++...|.+.+|.+..++..+ .|-.| -....-++.+.|...|+.|.|..-++++
T Consensus 212 maValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 212 MAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 44455566666666666665544 23222 1223345666666667666666655554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.094 Score=52.91 Aligned_cols=94 Identities=13% Similarity=0.073 Sum_probs=50.4
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHH
Q 002549 606 YRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYA 685 (909)
Q Consensus 606 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 685 (909)
+..+..++.+.+++..|+...+.++. +.|++..+++.-+.++...|+++.|+..|+++++. .|.|-.+-+.++.+-.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~-~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLE--LDPNNVKALYRRGQALLALGEYDLARDDFQKALKL-EPSNKAARAELIKLKQ 336 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHH
Confidence 34444455555666666666665555 55666666666666666666666666666666554 3444444444444433
Q ss_pred HcCC-HHHHHHHHHHHHH
Q 002549 686 ASGC-YERARAVFNTMMR 702 (909)
Q Consensus 686 ~~g~-~~~A~~~~~~~~~ 702 (909)
+... .+...++|..|..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 3332 2233555555544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.24 Score=51.45 Aligned_cols=101 Identities=11% Similarity=0.146 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHH--hHHHHHHHh
Q 002549 748 LLMLDAFARSGNIFEVKKIYHGMKAAGYF-PTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLS--IWNSMLKLY 824 (909)
Q Consensus 748 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~ 824 (909)
..+..++.+.|+.++|.+.+.++.+.... .+..+.-.|+..|...+++.++..++.+..+.. -|++. .|+..+-..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHHHHH
Confidence 34666667778888888888888753211 233455677788888888888888888775432 34443 344433322
Q ss_pred hccCC---------------HHHHHHHHHHHHHcCCCCChhh
Q 002549 825 TGIED---------------FKKTIQVYQEIQEADLQPDEDS 851 (909)
Q Consensus 825 ~~~g~---------------~~~A~~~~~~~~~~~~~p~~~~ 851 (909)
+..++ -..|.+.++++++ .+|...-
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAve--fNPHVp~ 381 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE--FNPHVPK 381 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHH--hCCCCch
Confidence 22222 2347788999988 7775433
|
The molecular function of this protein is uncertain. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.033 Score=45.78 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=65.7
Q ss_pred HHhccCchHHHHHHHHHHHHCCCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHh
Q 002549 788 LFCKGKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-----EDSFNTLIIMYCR 861 (909)
Q Consensus 788 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~ 861 (909)
++...|+++.|++.|.+.+. +-| ....||.-..++.-+|+.++|++-++++++ +..+ ..+|..-+..|-.
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale--Lag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE--LAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH--hcCccchHHHHHHHHHHHHHHH
Confidence 45567888888888888876 344 446788888888888888888888888887 3322 2456666777777
Q ss_pred cCChhhHHHHHHHHHHcCC
Q 002549 862 DCRPEEGLSLMHEMRKLGL 880 (909)
Q Consensus 862 ~g~~~~A~~~~~~~~~~~~ 880 (909)
.|+.+.|..-|+...+.|.
T Consensus 128 ~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGS 146 (175)
T ss_pred hCchHHHHHhHHHHHHhCC
Confidence 8888888888888877654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.45 Score=44.33 Aligned_cols=203 Identities=13% Similarity=0.113 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHH
Q 002549 604 DLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKA 683 (909)
Q Consensus 604 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 683 (909)
..|.....+|....++++|...+.++.+. ..++. ..+-..+.++.|.-+.+++.+. +.-...++-....
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~--yEnnr-------slfhAAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG--YENNR-------SLFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH--HHhcc-------cHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 34566666788888899888887777641 01111 1122233445555555555442 2234556667778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhC---CC--CccHHHHHHHHHHHHhcC
Q 002549 684 YAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDM---DF--KISKSSILLMLDAFARSG 758 (909)
Q Consensus 684 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g 758 (909)
|..+|..+.|...++++-+. .+.-++++|++++++.... +- +-....+..+...+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 88899988888888887542 1233456666666655322 10 111223444667778888
Q ss_pred CHHHHHHHHHHHHh----cCCCchH-HHHHHHHHHHhccCchHHHHHHHHHHHHCC--CCC-CHHhHHHHHHHhhccCCH
Q 002549 759 NIFEVKKIYHGMKA----AGYFPTM-YLYRVMSGLFCKGKRVRDVEAMVSEMKEAG--FKP-DLSIWNSMLKLYTGIEDF 830 (909)
Q Consensus 759 ~~~~a~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p-~~~~~~~l~~~~~~~g~~ 830 (909)
++++|-..+.+-.. ..--|+. ..+...|-.+.-..++-.|+..+++--+.+ +.| |..+...|+.+|- .|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCH
Confidence 88887777665532 1111222 223344444455567788888887744322 122 2345666666653 4566
Q ss_pred HHHH
Q 002549 831 KKTI 834 (909)
Q Consensus 831 ~~A~ 834 (909)
+++-
T Consensus 244 E~~~ 247 (308)
T KOG1585|consen 244 EEIK 247 (308)
T ss_pred HHHH
Confidence 6553
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.056 Score=48.26 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=49.4
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHH-----hCCCCccHHH
Q 002549 675 KVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQ-----DMDFKISKSS 746 (909)
Q Consensus 675 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 746 (909)
.+...++..+...|++++|.....+++..+|. +...|..++.+|...|+..+|++.|+++. +.|+.|++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 35556777778888999999999999888777 77788888888888888888888887764 2355555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.41 E-value=1.3 Score=45.01 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=60.1
Q ss_pred cHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 002549 711 SINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFC 790 (909)
Q Consensus 711 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 790 (909)
+.+.-+.-+...|+...|.++-.++. -|+...|...+.+++..++|++-.++... . -++.-|...+..+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHHH
Confidence 44444555566666666555544432 35555666666677777777665554322 1 12344555666666
Q ss_pred ccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHH
Q 002549 791 KGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQE 839 (909)
Q Consensus 791 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 839 (909)
+.|+..+|..++.++ ++ ..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHH
Confidence 667666666666552 11 2234455666666666665444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.058 Score=44.40 Aligned_cols=93 Identities=18% Similarity=0.019 Sum_probs=59.4
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHH---HHHHHHHHcC
Q 002549 612 AYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWN---ALIKAYAASG 688 (909)
Q Consensus 612 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g 688 (909)
++...|+.+.|++.|.+++. +-|...++|+.-+.++.-+|+.++|++-++++++..-+....... .-+..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34556667777777776665 667777777777777777777777777777766553333332222 2334566667
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 002549 689 CYERARAVFNTMMRDGPS 706 (909)
Q Consensus 689 ~~~~A~~~~~~~~~~~~~ 706 (909)
+-+.|..-|+.+.+.|.+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 777777777777766543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.33 E-value=2 Score=46.15 Aligned_cols=177 Identities=9% Similarity=-0.023 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 002549 537 AFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKM 616 (909)
Q Consensus 537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 616 (909)
..+....+.|+++...-+|++..-- +..-...|-..+.-....|+.+-|..++....+-.++-.+.+=..-...+-..
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~ 379 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESN 379 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhh
Confidence 3334444555555555555554321 11223344444444444455555554444333222221111111111122334
Q ss_pred CChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHH---HHHHHHHhcCCCCChHhHHHHHHH-----HHHcC
Q 002549 617 DFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAE---SLVGCLRQRCAPVDRKVWNALIKA-----YAASG 688 (909)
Q Consensus 617 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g 688 (909)
|++..|..+++.....- |+...+-..-+....+.|+.+.+. +++...... ..+..+...+.-- +.-.+
T Consensus 380 ~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 380 GNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred ccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhc
Confidence 55555555555555432 444444444444455555555555 222222221 1122222222211 22235
Q ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 002549 689 CYERARAVFNTMMRDGPSPTVDSINGLLQALI 720 (909)
Q Consensus 689 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 720 (909)
+.+.|..++.++.+..+. +..-|..+++...
T Consensus 456 d~~~a~~~l~~~~~~~~~-~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 456 DADLARIILLEANDILPD-CKVLYLELIRFEL 486 (577)
T ss_pred CHHHHHHHHHHhhhcCCc-cHHHHHHHHHHHH
Confidence 666666666666654433 4444444444433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.073 Score=57.69 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=64.9
Q ss_pred cCchHHHHHHHHHHHHCCCCCCHHhHHHH-HHHhhccCCHHHHHHHHHHHHHc--CCCC-ChhhHHHHHHHHHhcCChhh
Q 002549 792 GKRVRDVEAMVSEMKEAGFKPDLSIWNSM-LKLYTGIEDFKKTIQVYQEIQEA--DLQP-DEDSFNTLIIMYCRDCRPEE 867 (909)
Q Consensus 792 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~ 867 (909)
....+.|.++++.+.+ ..|+...|... +..+...|+.++|++.++++... ..+. ....+.-+++++...++|++
T Consensus 246 ~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 3455667777777766 35666555444 33455667777777777766541 1111 22455567777777777777
Q ss_pred HHHHHHHHHHc-CCCCChhhHHHHHHH-HhccCCH-------HHHHHhhc
Q 002549 868 GLSLMHEMRKL-GLEPKLDTYKSLISA-FGKQQQL-------EQAEELLK 908 (909)
Q Consensus 868 A~~~~~~~~~~-~~~p~~~~~~~l~~~-~~~~g~~-------~~A~~~~~ 908 (909)
|.+.+.++.+. .. ...+|.-+..+ +...|+. ++|.+++.
T Consensus 324 A~~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 324 AAEYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFR 371 (468)
T ss_pred HHHHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHH
Confidence 77777777752 22 23333333222 3556666 66655543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.033 Score=53.15 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=78.8
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-Hh---HHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC----hhhH
Q 002549 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SI---WNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD----EDSF 852 (909)
Q Consensus 781 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~ 852 (909)
.|+.-+.. .+.|++.+|.+.|...+++ .|+. .+ +.=|+.++..+|++++|...|..+.+ -.|+ +..+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k--~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK--DYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH--hCCCCCCChHHH
Confidence 56666654 4778899999999999985 3443 33 44578899999999999999999998 4554 4778
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh
Q 002549 853 NTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLD 885 (909)
Q Consensus 853 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 885 (909)
.-|+.+..+.|+.++|..+|+++.+. .|+..
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~--YP~t~ 249 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR--YPGTD 249 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH--CCCCH
Confidence 89999999999999999999999964 45543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0042 Score=38.42 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=26.8
Q ss_pred HHHHHHcCCCCC-hhhHHHHHHHHHhcCChhhHHH
Q 002549 837 YQEIQEADLQPD-EDSFNTLIIMYCRDCRPEEGLS 870 (909)
Q Consensus 837 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 870 (909)
|+++++ ++|+ +.+|..++.+|...|++++|++
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678888 8895 4889999999999999998863
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.06 E-value=2.8 Score=46.80 Aligned_cols=176 Identities=16% Similarity=0.191 Sum_probs=116.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002549 294 YNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYT----VLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALIC 369 (909)
Q Consensus 294 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 369 (909)
...-++.+++...++-|+.+.+.-. .+..+.. ...+-+.+.|++++|...|-+-... +.| ..++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 4456777888888999988765532 2333333 3344556789999999998876642 233 23566
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHH
Q 002549 370 GYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEE 449 (909)
Q Consensus 370 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 449 (909)
-|........--.+++.+.+.|+ .+...-..|+.+|.+.++.+.-.++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 66666667777778888888887 567777889999999999998777766554 2211 1123455666777777777
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHH
Q 002549 450 IRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSA 488 (909)
Q Consensus 450 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 488 (909)
|..+..+... .+..+--++-..+++++|++.+..+
T Consensus 482 a~~LA~k~~~----he~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK----HEWVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc----CHHHHHHHHHHhcCHHHHHHHHhcC
Confidence 7666554432 3333334445567788888887664
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.05 E-value=3.2 Score=46.42 Aligned_cols=223 Identities=13% Similarity=0.026 Sum_probs=125.6
Q ss_pred HHHHHHHHhhhcC-----ChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCCcccH
Q 002549 641 IYVDIIDAYGRLK-----LWQKAESLVGCLRQRCAPVDRKVWNALIKAYAAS---GCYERARAVFNTMMRDGPSPTVDSI 712 (909)
Q Consensus 641 ~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~ 712 (909)
+...++.+|.+.. +.+.|..++.+..+.|.+ .....++.++... .+...|.++|..+.+.|.. .+.
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~---~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~ 363 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP---DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAI 363 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHH
Confidence 4455555555532 556677777777665422 2222333333332 2567788888887776654 233
Q ss_pred HHHHHHHH----hcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 002549 713 NGLLQALI----VDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGL 788 (909)
Q Consensus 713 ~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 788 (909)
-.+..+|. ...+...|..++++..+.| .|........+..+.. +.++.+...+..+.+.|..-....-..+...
T Consensus 364 ~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~ 441 (552)
T KOG1550|consen 364 YRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQ 441 (552)
T ss_pred HHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHh
Confidence 33333332 2335677778888777777 3333322333334444 6677776666666665433211111111111
Q ss_pred ---Hhc----cCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhcc----CCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 002549 789 ---FCK----GKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGI----EDFKKTIQVYQEIQEADLQPDEDSFNTLII 857 (909)
Q Consensus 789 ---~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 857 (909)
... ..+.+.+...+...... -+......+...|..- .+.+.|...|.++.+.+ .....+++.
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~a~~~---g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~ 514 (552)
T KOG1550|consen 442 SEEDLFSRGVISTLERAFSLYSRAAAQ---GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGY 514 (552)
T ss_pred ccccccccccccchhHHHHHHHHHHhc---cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhh
Confidence 111 22455677777777653 3556666676666543 36899999999998844 667777777
Q ss_pred HHHhc-C--ChhhHHHHHHHHHHc
Q 002549 858 MYCRD-C--RPEEGLSLMHEMRKL 878 (909)
Q Consensus 858 ~~~~~-g--~~~~A~~~~~~~~~~ 878 (909)
.+-.- | ++..|.+++++..+.
T Consensus 515 ~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 515 MHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHhcCcCcchhHHHHHHHHHHHhc
Confidence 66542 2 268899998888753
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.31 Score=47.56 Aligned_cols=184 Identities=9% Similarity=0.026 Sum_probs=120.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhC-CC--CccHHHHHHHHHHHHhcCCHH
Q 002549 685 AASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDM-DF--KISKSSILLMLDAFARSGNIF 761 (909)
Q Consensus 685 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~g~~~ 761 (909)
...|+..+|...++++++..|+ |..+++..=.+|.-.|+.+.-...++++... +. +-....-..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4579999999999999999888 8889998889999999999888888888754 22 222333344555667899999
Q ss_pred HHHHHHHHHHhcCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHh-----HHHHHHHhhccCCHHHHHH
Q 002549 762 EVKKIYHGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSI-----WNSMLKLYTGIEDFKKTIQ 835 (909)
Q Consensus 762 ~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-----~~~l~~~~~~~g~~~~A~~ 835 (909)
+|.+.-++..+. .| +.-.-......+.-.|++.++.++..+-... -. +... |=...-.+...+.++.|++
T Consensus 193 dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr-~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WR-QSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hh-hhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999988873 33 2223345566777889999999987765431 11 1111 1111123344579999999
Q ss_pred HHHHHHHcCCCCChh-hH---HHHHHHHHhcCChhhHHHHHH
Q 002549 836 VYQEIQEADLQPDED-SF---NTLIIMYCRDCRPEEGLSLMH 873 (909)
Q Consensus 836 ~~~~~~~~~~~p~~~-~~---~~l~~~~~~~g~~~~A~~~~~ 873 (909)
+|.+-+-..++.+.. +. .-+-.+..+...+++-.++-+
T Consensus 269 IyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~ 310 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLAD 310 (491)
T ss_pred HHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhh
Confidence 998865433454432 22 223334444444554443333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.14 Score=43.84 Aligned_cols=86 Identities=8% Similarity=0.154 Sum_probs=55.7
Q ss_pred HhccCchHHHHHHHHHHHHCCCCCCH---HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHh
Q 002549 789 FCKGKRVRDVEAMVSEMKEAGFKPDL---SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE----DSFNTLIIMYCR 861 (909)
Q Consensus 789 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~ 861 (909)
..+.|++++|.+.|+.+... ++... .....++.+|.+.|++++|+..+++.++ +.|++ .++...+-++..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHHHHHHHHH
Confidence 44667788888888777653 23222 3456677788888888888888888888 78853 233344444444
Q ss_pred cCC---------------hhhHHHHHHHHHH
Q 002549 862 DCR---------------PEEGLSLMHEMRK 877 (909)
Q Consensus 862 ~g~---------------~~~A~~~~~~~~~ 877 (909)
... ..+|...|+++++
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 433 5666777777664
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.27 Score=42.22 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=64.8
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC---hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD---RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGL 715 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 715 (909)
...+..-+....+.|++++|++.|+.+... .|.. ..+.-.|+.+|...|++++|...+++.++..|..-.+.|...
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 444556666778889999999999998876 5544 445556888999999999999999999999887556677777
Q ss_pred HHHHHhcC
Q 002549 716 LQALIVDG 723 (909)
Q Consensus 716 ~~~~~~~g 723 (909)
+.+++...
T Consensus 89 ~~gL~~~~ 96 (142)
T PF13512_consen 89 MRGLSYYE 96 (142)
T ss_pred HHHHHHHH
Confidence 77765543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.85 E-value=3.3 Score=44.51 Aligned_cols=186 Identities=12% Similarity=0.087 Sum_probs=104.3
Q ss_pred CchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 002549 638 DLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQ 717 (909)
Q Consensus 638 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 717 (909)
....|....+.....|+.+...-.|++.+-. ...-...|--.+.-....|+.+-|..++.+..+...+ +......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHH
Confidence 3455666666667777777777777776543 2334556666666556668888888777777665433 3222222222
Q ss_pred H-HHhcCchhhHHHHHHHHHhCCCCccH-HHHHHHHHHHHhcCCHHHHH---HHHHHHHhcCCCch--HHHHHHHHH-HH
Q 002549 718 A-LIVDGRLNELYVVIQELQDMDFKISK-SSILLMLDAFARSGNIFEVK---KIYHGMKAAGYFPT--MYLYRVMSG-LF 789 (909)
Q Consensus 718 ~-~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~---~~~~~~~~~~~~p~--~~~~~~l~~-~~ 789 (909)
. .-..|++..|..+++.+.+.- |+- ..-..-+....+.|+.+.+. +++.........+. ...+...+. .+
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 2 334678888888888877654 332 22222344556777777777 33333332111111 111111121 12
Q ss_pred hccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccC
Q 002549 790 CKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIE 828 (909)
Q Consensus 790 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 828 (909)
.-.++.+.|..++.++.+. .+++...|..++..+..++
T Consensus 452 ~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 2346778888888888773 3445567777777666553
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.13 Score=49.32 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=49.5
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC---hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD---RKVWNALIKAYAASGCYERARAVFNTMMRDGPS 706 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 706 (909)
+.+++.|+.++..+|++++|...|..+.+. .|.+ +..+-.|+.+..+.|+.++|..+|+++.+..|.
T Consensus 178 ~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 178 PNAYYWLGESLYAQGDYEDAAYIFARVVKD-YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred chhHHHHHHHHHhcccchHHHHHHHHHHHh-CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 566777888888888888888888877664 3322 455666777777888888888888888887665
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.74 E-value=1 Score=43.79 Aligned_cols=51 Identities=10% Similarity=0.037 Sum_probs=30.9
Q ss_pred HhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Q 002549 543 CKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMR 595 (909)
Q Consensus 543 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 595 (909)
...|++.+|...|..+.... |.+...-..++.+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34555566666665555544 4555556666666667777777766666653
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.1 Score=43.52 Aligned_cols=155 Identities=9% Similarity=0.142 Sum_probs=82.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHH
Q 002549 682 KAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIF 761 (909)
Q Consensus 682 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 761 (909)
......|++.+|...|..+....++ +......++.+|...|+.+.|..++..+....-....... .
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l-------------~ 207 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGL-------------Q 207 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHH-------------H
Confidence 3445677888888888887777666 4555566667777777777777777664432211111110 1
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHH
Q 002549 762 EVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEI 840 (909)
Q Consensus 762 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 840 (909)
..++++. +.....+..++-++.-. .| |...-..+...+...|+.+.|++.+-.+
T Consensus 208 a~i~ll~----------------------qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 208 AQIELLE----------------------QAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred HHHHHHH----------------------HHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1112222 22222222233333322 34 4455555666666667777777777777
Q ss_pred HHcCCCC-ChhhHHHHHHHHHhcCChh-hHHHHHHHH
Q 002549 841 QEADLQP-DEDSFNTLIIMYCRDCRPE-EGLSLMHEM 875 (909)
Q Consensus 841 ~~~~~~p-~~~~~~~l~~~~~~~g~~~-~A~~~~~~~ 875 (909)
++++..- |...-..++..+.-.|.-+ .+.++.++|
T Consensus 263 l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 263 LRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 6654444 3455666666666555222 444444444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=1 Score=41.18 Aligned_cols=91 Identities=14% Similarity=0.026 Sum_probs=66.1
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHH
Q 002549 613 YCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYER 692 (909)
Q Consensus 613 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 692 (909)
|-..|-..-|+.-|.+++. +.|+-+.+++.++--+...|+++.|.+.|+...+.. |....+.-.-+-++.-.|++..
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHh
Confidence 3444556666667777776 889999999999999999999999999999998873 2222222222222334589999
Q ss_pred HHHHHHHHHHcCCC
Q 002549 693 ARAVFNTMMRDGPS 706 (909)
Q Consensus 693 A~~~~~~~~~~~~~ 706 (909)
|.+-+-+--+.+++
T Consensus 152 Aq~d~~~fYQ~D~~ 165 (297)
T COG4785 152 AQDDLLAFYQDDPN 165 (297)
T ss_pred hHHHHHHHHhcCCC
Confidence 99988888876665
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.65 E-value=2.7 Score=45.83 Aligned_cols=82 Identities=10% Similarity=-0.096 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcC---CCCChHhHHHHHHHHHHcCCHHHHHH
Q 002549 619 PETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRC---APVDRKVWNALIKAYAASGCYERARA 695 (909)
Q Consensus 619 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~ 695 (909)
.+.|..+++.+.. .-|++.-....-++.+...|+.++|++.|+++.... .......+.-++.++.-..+|++|.+
T Consensus 249 ~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 249 LEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 3444455444444 344444444455555555555555555555433210 01122233344444555555555555
Q ss_pred HHHHHHH
Q 002549 696 VFNTMMR 702 (909)
Q Consensus 696 ~~~~~~~ 702 (909)
.|.++.+
T Consensus 327 ~f~~L~~ 333 (468)
T PF10300_consen 327 YFLRLLK 333 (468)
T ss_pred HHHHHHh
Confidence 5555554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.33 Score=42.50 Aligned_cols=128 Identities=9% Similarity=0.099 Sum_probs=74.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHH-hHHHH--HHHhhccCC
Q 002549 754 FARSGNIFEVKKIYHGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLS-IWNSM--LKLYTGIED 829 (909)
Q Consensus 754 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~g~ 829 (909)
+...|+.++|+..|..+.+.|+.. .+.............|+...|...|+++-...-.|-.. -..-| ...+...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 455677788888888887755432 12223334455667788888888888876543333322 11112 223456677
Q ss_pred HHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 002549 830 FKKTIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEP 882 (909)
Q Consensus 830 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 882 (909)
++....-.+.+--. -+| ....--.|+-+-.+.|++.+|.++|+.+..-...|
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 77766665555432 233 22344456667777888888888888777533333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.63 E-value=3 Score=42.46 Aligned_cols=108 Identities=20% Similarity=0.244 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002549 294 YNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAK 373 (909)
Q Consensus 294 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (909)
.+..+.-+...|+...|..+-.+.. .|+..-|-..+.+++..+++++-.++... . -++.-|-.++..|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHHHH
Confidence 3444555667788888888777775 57888888888888888888877665432 1 133567777888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 002549 374 AGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQE 421 (909)
Q Consensus 374 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 421 (909)
.|...+|..++.++ + +..-+..|.+.|++.+|.+.-.+
T Consensus 250 ~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888777652 1 24456677888888887665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.61 E-value=3.2 Score=42.63 Aligned_cols=138 Identities=10% Similarity=0.058 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHH
Q 002549 76 FSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTL 155 (909)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 155 (909)
.|.|..+|-.||.-|.-.+..++.++++.++....|--..+|..-+++-...++++....+|.+.+.. ..+...|...
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k--~l~ldLW~lY 115 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK--SLNLDLWMLY 115 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh--hccHhHHHHH
Confidence 37788899999999999999999999999999888888899999999999999999999999999877 3456677777
Q ss_pred HHHHHHcCCCCchHH----HHHHHHHHH-CCCCCCH-HHHHHHHHHH---------HhcCCHHHHHHHHHHHHhC
Q 002549 156 INARLRSGAMVPNLG----VDLLNEVRR-SGLRPDI-ITYNTIISAC---------SRESNLEEAMKVYGDLEAH 215 (909)
Q Consensus 156 l~~~~~~~~~~~~~a----~~~~~~~~~-~~~~~~~-~~~~~li~~~---------~~~g~~~~A~~~~~~~~~~ 215 (909)
+.-.-+....-.+++ .+.|+-... .++.|-. ..|+..+... ..+.+.+.....|.+|+..
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t 190 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT 190 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC
Confidence 765554442212222 233333332 3555532 2334333322 1233456666677777654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.61 E-value=2.1 Score=49.68 Aligned_cols=106 Identities=10% Similarity=0.147 Sum_probs=53.9
Q ss_pred HHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchH
Q 002549 717 QALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVR 796 (909)
Q Consensus 717 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 796 (909)
..+.+.+++++|.-.|...=+ ..-.+.+|...|+|++|+.+..++... -..-..+--.|+..+...+++-
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~-~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG-KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHcccch
Confidence 334455666666665554321 112345666666666666666655431 0011112245556666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHH
Q 002549 797 DVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEI 840 (909)
Q Consensus 797 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 840 (909)
+|-++..+... .|.. .+..|++...+++|+......
T Consensus 1017 eAa~il~e~~s---d~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1017 EAAKILLEYLS---DPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHhc---CHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence 66666666653 2221 234455555666666655543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.035 Score=36.98 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002549 676 VWNALIKAYAASGCYERARAVFNTMMRDGPS 706 (909)
Q Consensus 676 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 706 (909)
++..++..|...|++++|.++|+++++..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3444555555555555555555555554444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.35 E-value=3.5 Score=41.44 Aligned_cols=161 Identities=12% Similarity=0.124 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHhc-CCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHH
Q 002549 745 SSILLMLDAFARSGNIF---EVKKIYHGMKAA-GYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSM 820 (909)
Q Consensus 745 ~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 820 (909)
.++..++.+|...+..+ +|..+.+.+.+. |-. +.++-.-+..+.+.++.+++.+.+.+|+.. +.-....+..+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 34555667776666544 344455555432 222 233333445555577778888888888763 22122334444
Q ss_pred HHHhhcc--CCHHHHHHHHHHHHHcCCCCChhhH-----HHHHHHHHhcCC------hhhHHHHHHHHHH-cCCCCChhh
Q 002549 821 LKLYTGI--EDFKKTIQVYQEIQEADLQPDEDSF-----NTLIIMYCRDCR------PEEGLSLMHEMRK-LGLEPKLDT 886 (909)
Q Consensus 821 ~~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~------~~~A~~~~~~~~~-~~~~p~~~~ 886 (909)
+..+... .....|...+.+++-.-+.|....+ .+..+.....++ .+...++++...+ .+.+.+..+
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 4443221 2345666666666543345533211 122222222222 3333344443333 222333333
Q ss_pred HHHH-------HHHHhccCCHHHHHHhhc
Q 002549 887 YKSL-------ISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 887 ~~~l-------~~~~~~~g~~~~A~~~~~ 908 (909)
-.++ +..+.+.+++++|..|++
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 2222 344667888898888875
|
It is also involved in sporulation []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.29 E-value=1.4 Score=46.10 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=49.5
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC-hHhHHHHH
Q 002549 607 RSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD-RKVWNALI 681 (909)
Q Consensus 607 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~ 681 (909)
..+..++.+.|+.++|++.+.++++..-..+...+...|+..+...+.+.++..++.+..+...|.+ ...|+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 4455566677888888888888776322223466778888888888888888888888654433333 34455433
|
The molecular function of this protein is uncertain. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.15 Score=48.25 Aligned_cols=116 Identities=19% Similarity=0.327 Sum_probs=75.9
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHH
Q 002549 100 VETFMRAESAVDDTVQVYNAMMGIYARN-----GRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLL 174 (909)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~ 174 (909)
+..|..+... .++-.+|-..+..+... +.++-....+..|.+.|+..|..+|+.||+.+-+..-. + ..+|
T Consensus 54 e~~F~aa~~~-~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi-P---~nvf 128 (406)
T KOG3941|consen 54 EKQFEAAEPE-KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI-P---QNVF 128 (406)
T ss_pred hhhhhccCcc-cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc-c---HHHH
Confidence 3444444322 45566666666665433 45555666778899999999999999999987654321 1 1222
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 002549 175 NEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLF 237 (909)
Q Consensus 175 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 237 (909)
+. ..--|-+ .-+-++.++++|..+|+.||-.+-..++++|++.+-.
T Consensus 129 Q~---------------~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QK---------------VFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HH---------------HHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 22 2222322 3356788888998889889988888888888887764
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.20 E-value=3 Score=39.84 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=30.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc---HHHHHHHHHhcCchhhHHHHHH
Q 002549 680 LIKAYAASGCYERARAVFNTMMRDGPSPTVDS---INGLLQALIVDGRLNELYVVIQ 733 (909)
Q Consensus 680 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~ 733 (909)
+++-|.+.|.+-.|..-++.+++..+. ...+ +..+..+|...|-.++|...-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~-t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPD-TSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 456677777777777777777776443 2222 3333344555555555544433
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=4 Score=40.87 Aligned_cols=202 Identities=8% Similarity=-0.047 Sum_probs=117.4
Q ss_pred ChHhHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCch-----hhHHHHHHHHHhCCCCcc
Q 002549 673 DRKVWNALIKAYAASGCY----ERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRL-----NELYVVIQELQDMDFKIS 743 (909)
Q Consensus 673 ~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~~~ 743 (909)
|+..-...+.++.+.|+. +++...+..+....+ +...-...+.++...+.. ..+...+..+.. .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~--d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDK--SACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCC--CHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 555555556666666652 355666665544333 222233333333333211 223333333222 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccC-chHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 002549 744 KSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGK-RVRDVEAMVSEMKEAGFKPDLSIWNSMLK 822 (909)
Q Consensus 744 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 822 (909)
..+-...+.++.+.|+ +++...+-.+++ .++..+-...+.++++.+ ...++...+..++. .+|..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 4444556666666666 456666666665 255556666666676653 24567777777774 457777777778
Q ss_pred HhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 002549 823 LYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFG 895 (909)
Q Consensus 823 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 895 (909)
++.+.|+ .+|+..+-+.++ .++ .....+.++...|.. +|...+..+.+ -.||..+....+.++.
T Consensus 215 aLg~~~~-~~av~~Li~~L~---~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKELK---KGT--VGDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHccCC-hhHHHHHHHHHc---CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHHh
Confidence 8888776 678888888877 233 345677888888884 78888888874 3456666555555543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.071 Score=35.48 Aligned_cols=41 Identities=29% Similarity=0.425 Sum_probs=30.0
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHH
Q 002549 640 SIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALI 681 (909)
Q Consensus 640 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 681 (909)
.++..++..|...|++++|+++|+++++. .|.|+.+|..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~-~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL-DPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCHHHHHHhh
Confidence 35667777888888888888888888776 566777776654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.97 E-value=4.5 Score=45.32 Aligned_cols=213 Identities=12% Similarity=0.054 Sum_probs=132.0
Q ss_pred hcCChHHHHHHHHHHHh-------cCCCCChHhHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 002549 651 RLKLWQKAESLVGCLRQ-------RCAPVDRKVWNALIKAYAASG-----CYERARAVFNTMMRDGPSPTVDSINGLLQA 718 (909)
Q Consensus 651 ~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 718 (909)
..++.+.|...++.+.+ .+ ++...+.++.+|.+.. +.+.|..++.+..+.|.. + ....++..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~--a~~~lg~~ 334 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-D--AQYLLGVL 334 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-h--HHHHHHHH
Confidence 44566677777666654 44 4556778888888753 678899999999987654 3 33344444
Q ss_pred HHhc---CchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 002549 719 LIVD---GRLNELYVVIQELQDMDFKISKSSILLMLDAFARS-----GNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFC 790 (909)
Q Consensus 719 ~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 790 (909)
+... .+...|.++|....+.|..+...- +. .|... .+...|..++.+..+.| .|...--......+.
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~---la-~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g 409 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYR---LA-LCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYG 409 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHH---HH-HHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHc
Confidence 4433 357899999999999885443221 11 23333 37899999999999988 333222223334444
Q ss_pred ccCchHHHHHHHHHHHHCCCCCCHHhHHHH-HHHh-----hc--cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 002549 791 KGKRVRDVEAMVSEMKEAGFKPDLSIWNSM-LKLY-----TG--IEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRD 862 (909)
Q Consensus 791 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~-----~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 862 (909)
. ++.+.+.-.+..+.+.+.+ ...+-... +... .. ..+.+.+...+.+... .-+......+++.|..-
T Consensus 410 ~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~g~~~a~~~lgd~y~~g 484 (552)
T KOG1550|consen 410 V-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA---QGNADAILKLGDYYYYG 484 (552)
T ss_pred c-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh---ccCHHHHhhhcceeeec
Confidence 5 8888877777766654432 11111111 1111 11 2367888888888876 33556666777766643
Q ss_pred ---C-ChhhHHHHHHHHHHcC
Q 002549 863 ---C-RPEEGLSLMHEMRKLG 879 (909)
Q Consensus 863 ---g-~~~~A~~~~~~~~~~~ 879 (909)
+ +++.|...+......+
T Consensus 485 ~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 485 LGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred CCCCCChHHHHHHHHHHHHhh
Confidence 2 4778888877776554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.93 E-value=1.9 Score=36.07 Aligned_cols=62 Identities=11% Similarity=0.218 Sum_probs=31.1
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCC
Q 002549 783 RVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADL 845 (909)
Q Consensus 783 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 845 (909)
...++.+.+.|+-|+-.+++.++.+. -.|+......+..+|.+.|+..+|-+++.++.+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555566666666666665431 245555555566666666666666666666666543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.46 Score=40.47 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 002549 323 NPDVVTYTVLIDSLGKANKISEAANVMSEMLDA-SVKPTLRTYSALIC 369 (909)
Q Consensus 323 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~ 369 (909)
.|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345555555555555555555555555554332 33334444444444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.37 Score=43.29 Aligned_cols=85 Identities=13% Similarity=0.161 Sum_probs=47.2
Q ss_pred HhccCchHHHHHHHHHHHHCCCCCCH-----HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhc
Q 002549 789 FCKGKRVRDVEAMVSEMKEAGFKPDL-----SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRD 862 (909)
Q Consensus 789 ~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 862 (909)
+.+.|.+++|..-|..+++. ++|-+ +.|..-..+..+.+..+.|++-..++++ ++|.. .++...+.+|-+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHhh
Confidence 34556666666666665552 22211 2233334455556666666666666666 66633 5555556666666
Q ss_pred CChhhHHHHHHHHH
Q 002549 863 CRPEEGLSLMHEMR 876 (909)
Q Consensus 863 g~~~~A~~~~~~~~ 876 (909)
.++++|++-|+++.
T Consensus 182 ek~eealeDyKki~ 195 (271)
T KOG4234|consen 182 EKYEEALEDYKKIL 195 (271)
T ss_pred hhHHHHHHHHHHHH
Confidence 66666666666665
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.68 E-value=5.4 Score=40.10 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=12.9
Q ss_pred HhhccCCHHHHHHHHHHHH
Q 002549 823 LYTGIEDFKKTIQVYQEIQ 841 (909)
Q Consensus 823 ~~~~~g~~~~A~~~~~~~~ 841 (909)
.+.+.+++++|.+.|+-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4556678888887777544
|
It is also involved in sporulation []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.55 E-value=2.1 Score=37.75 Aligned_cols=123 Identities=13% Similarity=0.014 Sum_probs=60.3
Q ss_pred hcccHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCc--hHHHHHHHHhhhcCChH
Q 002549 580 YNERFAEASQVFSDMRFYNIEPSEDL-YRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDL--SIYVDIIDAYGRLKLWQ 656 (909)
Q Consensus 580 ~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 656 (909)
+.+..++|+.-|.++.+.|...-+.. .........+.|+...|+..|+++-...-.|... .+-..-+.++...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 34445555555555544433222111 1122233444555555555555544322222111 01111223445556666
Q ss_pred HHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002549 657 KAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMR 702 (909)
Q Consensus 657 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 702 (909)
+.....+.+...+.|.....-.+|.-+-.+.|++..|...|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6666666655444444455556666666677777777777777655
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.43 E-value=3.1 Score=36.59 Aligned_cols=85 Identities=11% Similarity=0.094 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002549 190 NTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFARE 269 (909)
Q Consensus 190 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 269 (909)
..++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+..+.+.. .++......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345555556666777777777766665 355666667777766543 2333333331 12333344455555555
Q ss_pred CCHHHHHHHHHHH
Q 002549 270 GNVEKVKEISENM 282 (909)
Q Consensus 270 g~~~~a~~~~~~~ 282 (909)
+-++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6565555555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.42 E-value=1.9 Score=46.19 Aligned_cols=132 Identities=16% Similarity=0.132 Sum_probs=64.3
Q ss_pred HhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHH
Q 002549 579 EYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKA 658 (909)
Q Consensus 579 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 658 (909)
..+++++++..+.+.-.-. ......-...++..+.+.|.++.|+++-.. + ..-..+..+.|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D----------~---~~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD----------P---DHRFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-----------H---HHHHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC----------h---HHHhHHHHhcCCHHHH
Confidence 3455666655554311000 011133355566666666666666665221 1 1223444556666666
Q ss_pred HHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhC
Q 002549 659 ESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDM 738 (909)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 738 (909)
.++.++ .++...|..|+.....+|+++-|.+.|.+.. -+..|.-.|.-.|+.+.-.++.+.....
T Consensus 338 ~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 338 LEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 555432 2356677777777777777777777777751 1455555566666655555544444443
Q ss_pred C
Q 002549 739 D 739 (909)
Q Consensus 739 ~ 739 (909)
|
T Consensus 403 ~ 403 (443)
T PF04053_consen 403 G 403 (443)
T ss_dssp T
T ss_pred c
Confidence 3
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.048 Score=33.70 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=17.4
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHH
Q 002549 634 IPFEDLSIYVDIIDAYGRLKLWQKAE 659 (909)
Q Consensus 634 ~~~~~~~~~~~l~~~~~~~~~~~~A~ 659 (909)
+.|+++.++..++.+|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666666666666666666666664
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.82 Score=38.95 Aligned_cols=48 Identities=19% Similarity=0.096 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 002549 218 QPDLWTYNAMISVYGRCGLFEKAEQLFKELESK-GFFPDAVTYNSLLYA 265 (909)
Q Consensus 218 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~ 265 (909)
.|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|+.-
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344455555555555555555555555444332 333344444444433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.089 Score=32.53 Aligned_cols=31 Identities=26% Similarity=0.569 Sum_probs=17.6
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC
Q 002549 816 IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD 848 (909)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 848 (909)
+|..++.+|...|++++|++.|+++++ ++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 355555566666666666666666666 5554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.08 E-value=1.4 Score=39.84 Aligned_cols=90 Identities=7% Similarity=-0.032 Sum_probs=49.1
Q ss_pred HHHHhccCchHHHHHHHHHHHHCCCCCCHH----hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 002549 786 SGLFCKGKRVRDVEAMVSEMKEAGFKPDLS----IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCR 861 (909)
Q Consensus 786 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 861 (909)
...+..+|++++|+..++..+.. +.|.. +-.-|.......|.+++|+..++...+. .-.+.....-++++..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~--~w~~~~~elrGDill~ 171 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE--SWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc--cHHHHHHHHhhhHHHH
Confidence 34455666666666666666541 22221 1222344555666666666666655441 1122334455666666
Q ss_pred cCChhhHHHHHHHHHHcC
Q 002549 862 DCRPEEGLSLMHEMRKLG 879 (909)
Q Consensus 862 ~g~~~~A~~~~~~~~~~~ 879 (909)
.|+.++|+.-|++..+.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 677777777766666543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.70 E-value=6.1 Score=36.98 Aligned_cols=89 Identities=9% Similarity=0.067 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHh--cCCCch---HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHH----HHHHhhc-c
Q 002549 758 GNIFEVKKIYHGMKA--AGYFPT---MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNS----MLKLYTG-I 827 (909)
Q Consensus 758 g~~~~a~~~~~~~~~--~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~----l~~~~~~-~ 827 (909)
.++++|+..|++.-+ .|-..+ ...+......-...+++.+|+.+|++.....+..+..-|.. +-.++|+ .
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 566667776666654 121121 22333344445678899999999999876433333333432 1122333 2
Q ss_pred -CCHHHHHHHHHHHHHcCCCCC
Q 002549 828 -EDFKKTIQVYQEIQEADLQPD 848 (909)
Q Consensus 828 -g~~~~A~~~~~~~~~~~~~p~ 848 (909)
.+.--+...+++-.+ +.|.
T Consensus 208 ~~D~v~a~~ALeky~~--~dP~ 227 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQE--LDPA 227 (288)
T ss_pred cccHHHHHHHHHHHHh--cCCc
Confidence 566667777777777 7884
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.14 Score=32.17 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHH
Q 002549 851 SFNTLIIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 851 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 876 (909)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888855
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.7 Score=41.63 Aligned_cols=93 Identities=11% Similarity=0.057 Sum_probs=53.9
Q ss_pred HHHhhhcCChHHHHHHHHHHHhcCCCCC----hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 002549 646 IDAYGRLKLWQKAESLVGCLRQRCAPVD----RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIV 721 (909)
Q Consensus 646 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 721 (909)
++-+...|++++|.+-|..+++.+.+.. ...|..-+.++.+.+.++.|++--.++++.+|. ....+..-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 3445566666666666666666543322 223333445666777777777777777776654 33333333445666
Q ss_pred cCchhhHHHHHHHHHhCC
Q 002549 722 DGRLNELYVVIQELQDMD 739 (909)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~ 739 (909)
..++++|++=|+++.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 666666666666665543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.46 E-value=5.4 Score=42.84 Aligned_cols=154 Identities=11% Similarity=0.030 Sum_probs=81.6
Q ss_pred HHcCCHhHHHHHHH--HHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHH
Q 002549 407 LRFNETNKAMMLYQ--EMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEI 484 (909)
Q Consensus 407 ~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 484 (909)
.-.++++.+.++.+ ++.. . - +....+.++..+.+.|..+.|+++.. +|+.-+.+.++.|+.+.|.+.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~-i-~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-N-I-PKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFELALQLGNLDIALEI 340 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHHHHCT-HHHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcc-c-C-ChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHHHhcCCHHHHHHH
Confidence 34566666555543 1111 1 1 24446666777777777777776652 344455666666666666665
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 002549 485 LRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFF 564 (909)
Q Consensus 485 ~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 564 (909)
.++ ..+...|..+.......|+.+.|.+.+....+ +..+.-.|.-.|+.+.-.++.+.+...+
T Consensus 341 a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-- 403 (443)
T PF04053_consen 341 AKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-- 403 (443)
T ss_dssp CCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 332 34666777777777777777777777765432 3445556666666665555555554433
Q ss_pred ccchhhHHHHHHHHHhcccHHHHHHHHHH
Q 002549 565 SKSKTMYESLIHSCEYNERFAEASQVFSD 593 (909)
Q Consensus 565 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 593 (909)
-++....++...|+.++..+++.+
T Consensus 404 -----~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 -----DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -----CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 144444555555666666555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.43 E-value=2 Score=37.87 Aligned_cols=51 Identities=18% Similarity=0.016 Sum_probs=32.8
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhc
Q 002549 616 MDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQR 668 (909)
Q Consensus 616 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 668 (909)
.++.+++..+++-+.. +.|.....-..-+..+...|+|.+|+.+|+.+.+.
T Consensus 23 ~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 23 LGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred cCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3344444444444433 56666666667777777788888888888887654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.4 Score=46.88 Aligned_cols=93 Identities=12% Similarity=0.144 Sum_probs=63.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH--HhHHHHHHHhhc
Q 002549 750 MLDAFARSGNIFEVKKIYHGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL--SIWNSMLKLYTG 826 (909)
Q Consensus 750 l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~ 826 (909)
-.+-|.++|++++|+.+|...... .| |++.+..-..+|.+..++..|+.-...++.. . +. -.|+--+.+-..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d-~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--D-KLYVKAYSRRMQARES 177 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--h-HHHHHHHHHHHHHHHH
Confidence 456778888888888888777653 35 7777777777888888888777777776641 1 22 224444444445
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCh
Q 002549 827 IEDFKKTIQVYQEIQEADLQPDE 849 (909)
Q Consensus 827 ~g~~~~A~~~~~~~~~~~~~p~~ 849 (909)
.|+..+|.+-++.+++ +.|++
T Consensus 178 Lg~~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred HhhHHHHHHhHHHHHh--hCccc
Confidence 5777788888888887 77763
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.13 E-value=5.9 Score=36.08 Aligned_cols=91 Identities=10% Similarity=0.028 Sum_probs=47.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCch--HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccC
Q 002549 751 LDAFARSGNIFEVKKIYHGMKAAGYFPT--MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIE 828 (909)
Q Consensus 751 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 828 (909)
...+...|++++|..-++..+......+ ..+--.|.......|.+|+|+..++.....++ .......-+..+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 3445555566666555555553211111 11122334455566777777777666654221 1122333455666777
Q ss_pred CHHHHHHHHHHHHHc
Q 002549 829 DFKKTIQVYQEIQEA 843 (909)
Q Consensus 829 ~~~~A~~~~~~~~~~ 843 (909)
+-++|+..|++.++.
T Consensus 174 ~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 174 DKQEARAAYEKALES 188 (207)
T ss_pred chHHHHHHHHHHHHc
Confidence 777777777777763
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.04 E-value=5.9 Score=34.83 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 002549 261 SLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKAN 340 (909)
Q Consensus 261 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 340 (909)
.++..+.+.+.+......++.+.+.+ ..+...++.++..|++.+ .....+.++. .++......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444444555555555554444 244445555555555432 2222232221 112223333445555555
Q ss_pred CHHHHHHHHHHH
Q 002549 341 KISEAANVMSEM 352 (909)
Q Consensus 341 ~~~~A~~~~~~~ 352 (909)
.++++.-++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.15 Score=31.38 Aligned_cols=26 Identities=15% Similarity=0.521 Sum_probs=12.8
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHH
Q 002549 817 WNSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
|..++.+|...|++++|++.|+++++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444455555555555555555555
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.17 Score=31.81 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=22.1
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHH
Q 002549 816 IWNSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
+|..|+..|...|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467888999999999999999999665
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.70 E-value=1.3 Score=40.64 Aligned_cols=97 Identities=7% Similarity=0.047 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH--HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC---ChhhHH
Q 002549 779 MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL--SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP---DEDSFN 853 (909)
Q Consensus 779 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~ 853 (909)
...+..+++.|.+.|+.++|++.+.++.+....|.. ..+..++..+...|++..+.....++...--.+ +...-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 356778888888888888888888888775444444 346677777788888888888888876521112 222222
Q ss_pred H--HHHHHHhcCChhhHHHHHHHH
Q 002549 854 T--LIIMYCRDCRPEEGLSLMHEM 875 (909)
Q Consensus 854 ~--l~~~~~~~g~~~~A~~~~~~~ 875 (909)
. -+-.+...+++.+|-+.|-..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 2 223334567777777777664
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.55 E-value=5.7 Score=33.43 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002549 295 NTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDAS 356 (909)
Q Consensus 295 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 356 (909)
..-++.+...|.-|.-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334444455555555555555544322 3455555555555555555555555555555544
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.46 E-value=21 Score=39.77 Aligned_cols=87 Identities=17% Similarity=0.082 Sum_probs=42.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002549 297 IIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANK--ISEAANVMSEMLDASVKPTLRTYSALICGYAKA 374 (909)
Q Consensus 297 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (909)
+++-+...+.+..|+++-.-+...-..- ...|.....-+.+..+ -+++++..++=...-. .+..+|..+..-....
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhc
Confidence 4555666667777777665554211111 3445555555554421 1222222222222111 2344566666666667
Q ss_pred CCHHHHHHHHH
Q 002549 375 GNRLEAEKTFY 385 (909)
Q Consensus 375 g~~~~a~~~~~ 385 (909)
|+.+-|..+++
T Consensus 521 GR~~LA~kLle 531 (829)
T KOG2280|consen 521 GRFELARKLLE 531 (829)
T ss_pred CcHHHHHHHHh
Confidence 77777766654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.94 E-value=32 Score=40.72 Aligned_cols=134 Identities=22% Similarity=0.250 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002549 295 NTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLI----DSLGKANKISEAANVMSEMLDASVKPTLRTYSALICG 370 (909)
Q Consensus 295 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (909)
.-.++.--+.|.+++|+.++ .|+...+..+. .-+.+.+.+++|.-.|+..-+ ....+.+
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a 974 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKA 974 (1265)
T ss_pred HHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHH
Confidence 33334444555555555544 24444443333 333445666666665555421 1233556
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHH
Q 002549 371 YAKAGNRLEAEKTFYCMRRSGIRPDH--LAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGE 448 (909)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 448 (909)
|...|+|.+|..+..++... .+. .+-..|+.-+...++.-+|-++..+.... | .-.+..||+...++
T Consensus 975 ~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 975 YKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWE 1043 (1265)
T ss_pred HHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHH
Confidence 66667777777666655421 121 12245556666667766666666665432 1 12233455555566
Q ss_pred HHHHHHHH
Q 002549 449 EIRKVVRD 456 (909)
Q Consensus 449 ~a~~~~~~ 456 (909)
+|.++...
T Consensus 1044 eAlrva~~ 1051 (1265)
T KOG1920|consen 1044 EALRVASK 1051 (1265)
T ss_pred HHHHHHHh
Confidence 66555443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.81 E-value=3.8 Score=36.77 Aligned_cols=32 Identities=25% Similarity=0.101 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcC
Q 002549 620 ETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLK 653 (909)
Q Consensus 620 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 653 (909)
++|+.-|++++. ++|+...++..++++|...+
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 344555666666 78888888888888876654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.74 E-value=29 Score=39.76 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=15.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHH
Q 002549 854 TLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 854 ~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
.|+.++...|++++|...+.++..
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 555666666666666666666655
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.66 E-value=2.3 Score=39.82 Aligned_cols=79 Identities=11% Similarity=0.123 Sum_probs=36.6
Q ss_pred CchHHHHHHHHHHHHCCCCCCHHh-HHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHH
Q 002549 793 KRVRDVEAMVSEMKEAGFKPDLSI-WNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLS 870 (909)
Q Consensus 793 g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 870 (909)
.+++.|+..+.+++. +.|...+ |..=+-++.+..+++.+.+-..++++ +.|+. .....++.++.....+++|+.
T Consensus 24 k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHH
Confidence 344444444444443 3444422 22223333344455555555555555 55543 444444545554555555555
Q ss_pred HHHHH
Q 002549 871 LMHEM 875 (909)
Q Consensus 871 ~~~~~ 875 (909)
.+.+.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 55544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.61 E-value=12 Score=35.16 Aligned_cols=20 Identities=0% Similarity=-0.032 Sum_probs=10.9
Q ss_pred HhcCchhhHHHHHHHHHhCC
Q 002549 720 IVDGRLNELYVVIQELQDMD 739 (909)
Q Consensus 720 ~~~g~~~~A~~~~~~~~~~~ 739 (909)
++.+++.+|+.+|++.....
T Consensus 165 a~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34555666666665555443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.47 E-value=27 Score=38.97 Aligned_cols=107 Identities=17% Similarity=0.119 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHh
Q 002549 677 WNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFAR 756 (909)
Q Consensus 677 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 756 (909)
.+.-+..++..|+..+|.++-.+. --|+-..|-.-+.+++..++|++-.++-+... ++..|.-...+|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 344444555667777776665554 34565566566666666666666555444322 23444445666777
Q ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHH
Q 002549 757 SGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMV 802 (909)
Q Consensus 757 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 802 (909)
.|+.++|.+++-++... .-.+.+|.+.|.+.+|.++-
T Consensus 757 ~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHH
Confidence 77777776666554321 03455566666666666543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.53 Score=28.96 Aligned_cols=30 Identities=27% Similarity=0.384 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002549 676 VWNALIKAYAASGCYERARAVFNTMMRDGP 705 (909)
Q Consensus 676 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 705 (909)
+|..++.+|...|++++|+..|+++++..|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 456666666677777777777777666443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.74 Score=41.10 Aligned_cols=110 Identities=18% Similarity=0.224 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcc---C-------chHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccC
Q 002549 760 IFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKG---K-------RVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIE 828 (909)
Q Consensus 760 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g-------~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 828 (909)
++.|.+.++...... +.|...++....++... . .+++|++-|++++. +.|+. .++..++.+|..++
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 455666666644432 23445444444444322 2 23445555566665 67776 67777888876543
Q ss_pred ----C-------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 002549 829 ----D-------FKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGL 880 (909)
Q Consensus 829 ----~-------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 880 (909)
+ +++|.+.|+++.+ .+|++..|+.-.... .+|=++..+..+.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 2 5666667777776 788888877655554 346677766665433
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.39 E-value=1.9 Score=41.28 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccC----------------chHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 002549 758 GNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGK----------------RVRDVEAMVSEMKEAGFKPDLSIWNSML 821 (909)
Q Consensus 758 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----------------~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 821 (909)
+.++=....++.|.+.|+.-|..+|+.|++.+-+.. +-+-+++++++|...|+-||..+-..|+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 344444455556666666666666666666554321 2234566666666666666666666666
Q ss_pred HHhhccC
Q 002549 822 KLYTGIE 828 (909)
Q Consensus 822 ~~~~~~g 828 (909)
+++.+.|
T Consensus 166 n~FGr~~ 172 (406)
T KOG3941|consen 166 NAFGRWN 172 (406)
T ss_pred HHhcccc
Confidence 6666554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.25 E-value=9.8 Score=33.69 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=38.0
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002549 644 DIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDG 704 (909)
Q Consensus 644 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 704 (909)
.++..-...++.+++..++..+.-. .|..+..-..-+..++..|+|.+|..+|+.+.+..
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvL-RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVL-RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 3444455666777888888777654 23334444444556677788888888888876543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.14 E-value=1.9 Score=42.27 Aligned_cols=77 Identities=10% Similarity=0.139 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH-----cCCCCChhhHH
Q 002549 779 MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQE-----ADLQPDEDSFN 853 (909)
Q Consensus 779 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 853 (909)
..++..++..+..+|+.+.+.+.++++.+.. +-|...|..++.+|...|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4555666666777777777777777766521 22556677777777777777777777766654 25555444433
Q ss_pred HHH
Q 002549 854 TLI 856 (909)
Q Consensus 854 ~l~ 856 (909)
.+.
T Consensus 232 ~y~ 234 (280)
T COG3629 232 LYE 234 (280)
T ss_pred HHH
Confidence 333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.96 E-value=2.5 Score=38.78 Aligned_cols=29 Identities=24% Similarity=0.214 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHhC
Q 002549 569 TMYESLIHSCEYNERFAEASQVFSDMRFY 597 (909)
Q Consensus 569 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 597 (909)
..+..+..-|.+.|+.++|++.|.++.+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~ 65 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY 65 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 34555555566666666666666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.27 Score=30.30 Aligned_cols=26 Identities=15% Similarity=0.540 Sum_probs=15.2
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHH
Q 002549 817 WNSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
|..++..|...|++++|.+.|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555556666666666666655
|
... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.69 E-value=2.6 Score=41.35 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----cCCCCChHHHHHHH
Q 002549 82 MLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRK-----RGCEPDLVSFNTLI 156 (909)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~~~~~ll 156 (909)
++..++..+..+|+++.+.+.+.+.....|.+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4556777777788888888888877777777888888888888888888888888877764 46666666555554
Q ss_pred HH
Q 002549 157 NA 158 (909)
Q Consensus 157 ~~ 158 (909)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.76 Score=28.16 Aligned_cols=30 Identities=33% Similarity=0.524 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002549 676 VWNALIKAYAASGCYERARAVFNTMMRDGP 705 (909)
Q Consensus 676 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 705 (909)
.|..++.++...|++++|++.|+++++..|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 455566666666666666666666666443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.30 E-value=13 Score=33.37 Aligned_cols=98 Identities=18% Similarity=0.260 Sum_probs=45.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 002549 384 FYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGI 463 (909)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 463 (909)
++.+.+.+++|+...+..+++.+.+.|++... ..++..++-+|.......+-.+. +....+.++--+|.+.-+.
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhhh
Confidence 33444455555555666666666665554432 22333344444433333322221 1223344444444443333
Q ss_pred ChHHHHHHHHhcccHHHHHHHHHH
Q 002549 464 NMQEISSILVKGECYDHAAEILRS 487 (909)
Q Consensus 464 ~~~~~~~~~~~~~~~~~a~~~~~~ 487 (909)
..+.+..++...|++-+|+...+.
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHH
Confidence 444555555666666666655554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.84 E-value=29 Score=36.50 Aligned_cols=146 Identities=8% Similarity=0.040 Sum_probs=72.9
Q ss_pred CcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch--HHHH
Q 002549 708 TVDSINGLLQALIVDGRLNELYVVIQELQDMDFKI---SKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPT--MYLY 782 (909)
Q Consensus 708 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~ 782 (909)
...+|..++..+.+.|+++.|...+.++.+.+... .+.+...-+......|+-.+|...++...+..+... ....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 44556667777777777777777777776644221 233333445566667777777777776665222111 0000
Q ss_pred HHHHHHHhc--cCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhcc------CCHHHHHHHHHHHHHcCCCCCh-hhHH
Q 002549 783 RVMSGLFCK--GKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGI------EDFKKTIQVYQEIQEADLQPDE-DSFN 853 (909)
Q Consensus 783 ~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~p~~-~~~~ 853 (909)
..+...+.. ............. ..-...+..++..+... ++.+++...|+++.+ +.|+. .++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k~~~ 296 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESK------ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEKAWH 296 (352)
T ss_pred HHHhhccccccccccccchhhhhH------HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHHHHH
Confidence 011000000 0000000000000 00001222333333333 788999999999999 88854 6777
Q ss_pred HHHHHHHh
Q 002549 854 TLIIMYCR 861 (909)
Q Consensus 854 ~l~~~~~~ 861 (909)
.++..+.+
T Consensus 297 ~~a~~~~~ 304 (352)
T PF02259_consen 297 SWALFNDK 304 (352)
T ss_pred HHHHHHHH
Confidence 77766554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.18 E-value=81 Score=40.82 Aligned_cols=150 Identities=12% Similarity=0.107 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCHhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002549 226 AMISVYGRCGLFEKAEQLFKEL----ESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMY 301 (909)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (909)
++..+-.+++.+.+|...++.- .+.. .....|-.+...|...+++|....+...... +...+. -|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHH
Confidence 5566778899999999999883 2221 1223344445589999999988877764211 222333 34456
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHH
Q 002549 302 GKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSAL-ICGYAKAGNRLEA 380 (909)
Q Consensus 302 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a 380 (909)
...|++..|...|+.+.+.+ ++...+++-++......|.++..+...+-.... ..+....++.+ +.+-.+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 67899999999999999875 233667777777777778888777766555433 22333334333 3444677777777
Q ss_pred HHHHH
Q 002549 381 EKTFY 385 (909)
Q Consensus 381 ~~~~~ 385 (909)
+..+.
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 66654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.87 E-value=27 Score=34.99 Aligned_cols=235 Identities=15% Similarity=0.060 Sum_probs=117.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCh----hHHHHHHHHHHHcCCCCChHHH
Q 002549 77 SPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRF----QKVQELLDLMRKRGCEPDLVSF 152 (909)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~m~~~g~~~~~~~~ 152 (909)
.++..+....+..+...|..+ +......+.. ..++.....-+.++...|.. +++...+..+... .|+...-
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQD-VFRLAIELCS--SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcch-HHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 345555555666666655432 2222222222 34566666667777777764 3566666666433 3566655
Q ss_pred HHHHHHHHHcCCCCc---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 002549 153 NTLINARLRSGAMVP---NLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMIS 229 (909)
Q Consensus 153 ~~ll~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 229 (909)
...+.++...+.... ..+...+.... ..++..+-...+.++.+.++ ..|...+-.+.+. +|...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 566666555432111 11222222222 23355555566666666665 4555555555542 34444444444
Q ss_pred HHHHcC-CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002549 230 VYGRCG-LFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHD 308 (909)
Q Consensus 230 ~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 308 (909)
++++.+ ...++...+..+... +|..+-...+.++.+.++. .+...+-...+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 444432 233555555555532 3555566666666666663 3444444444322 1 233455566666663
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 002549 309 VALQLYRDMKLSGRNPDVVTYTVLIDS 335 (909)
Q Consensus 309 ~A~~~~~~~~~~~~~~~~~~~~~li~~ 335 (909)
+|...+..+.+. .||...-...+.+
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 466666666543 3455444444433
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=88.51 E-value=35 Score=35.73 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=42.1
Q ss_pred ChHhHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH-hcCchhhHHHHHHHHHh
Q 002549 673 DRKVWNAL---IKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALI-VDGRLNELYVVIQELQD 737 (909)
Q Consensus 673 ~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 737 (909)
|...|-++ +..+.+.|.+..|.++.+-++..+|..|......+|..|+ +.++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44444444 4566677888888888888888776656655555666554 56666666666665443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.50 E-value=30 Score=34.97 Aligned_cols=127 Identities=15% Similarity=0.300 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCC---
Q 002549 274 KVKEISENMLKMGFGKDEMTYNTIIHMYGK--QG----QHDVALQLYRDMKLSGR---NPDVVTYTVLIDSLGKANK--- 341 (909)
Q Consensus 274 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~--- 341 (909)
+...+++.+.+.|+..+..+|-+-.-.... .. ....|..+|+.|++... .++..++..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344555666666666655444432222211 11 13456666777766543 2344455555443 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002549 342 -ISEAANVMSEMLDASVKPTL--RTYSALICGYAKAGN--RLEAEKTFYCMRRSGIRPDHLAYSVM 402 (909)
Q Consensus 342 -~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l 402 (909)
.+.+...|+.+.+.|...+. ...+.++...-.... ...+.++++.+.+.|+++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 23344555555554443322 122222222111111 33455555566666655555554443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.30 E-value=19 Score=32.43 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 002549 677 WNALIKAYAASGCYERARAVFNTM 700 (909)
Q Consensus 677 ~~~l~~~~~~~g~~~~A~~~~~~~ 700 (909)
+..++..+...|++-+|+++.+..
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 344556666777777777776664
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.19 E-value=37 Score=35.65 Aligned_cols=64 Identities=9% Similarity=-0.023 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 002549 568 KTMYESLIHSCEYNERFAEASQVFSDMRFYNIEP---SEDLYRSMVVAYCKMDFPETAHFIADQAEK 631 (909)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 631 (909)
..+|..++..+.+.|+++.|...+..+...+..+ .+.........+...|+.++|+..++..+.
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555555555554322111 223333334444445555555555544443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.97 E-value=0.75 Score=27.91 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 852 FNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 852 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
+..++.++.+.|++++|.+.++++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45566666666777777777766664
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.96 E-value=32 Score=34.73 Aligned_cols=115 Identities=18% Similarity=0.293 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCCC---chHHHHHHHHHHHhccCc----hHHHHHHHHHHHHCCCCCCHH-hHHHHHHHhhc-cC--
Q 002549 760 IFEVKKIYHGMKAAGYF---PTMYLYRVMSGLFCKGKR----VRDVEAMVSEMKEAGFKPDLS-IWNSMLKLYTG-IE-- 828 (909)
Q Consensus 760 ~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~-~g-- 828 (909)
...+..+|+.|++...- ++-..+..++.. .... .+..+.+++.+.+.|+..+.. -+.+-+-++.. ..
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 34567777777763211 222333333221 2222 245666777777777766542 23333333332 22
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 002549 829 DFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 829 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 876 (909)
...++.++++.+.+.|+++....|..+|-.-.-.+..++..+.+.++.
T Consensus 197 ~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~ev~ 244 (297)
T PF13170_consen 197 KVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIKEVI 244 (297)
T ss_pred HHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHHHHH
Confidence 245778888888888877766666655543333333324444444443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.69 E-value=0.025 Score=50.25 Aligned_cols=129 Identities=9% Similarity=0.124 Sum_probs=74.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCC
Q 002549 750 MLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIED 829 (909)
Q Consensus 750 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 829 (909)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++.+++++. .+..-...++..|.+.|-
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 3445555666666777777777655445677777888888888777777776652 122333445566667777
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCH
Q 002549 830 FKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQL 900 (909)
Q Consensus 830 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 900 (909)
+++|.-+|.++-.. ...+..+...+++++|.++..+ .+++..|..+++.+...++.
T Consensus 86 ~~~a~~Ly~~~~~~---------~~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNH---------DEALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTH---------TTCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccH---------HHHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCcc
Confidence 77776666653220 0001123344555556544333 34577788888777766553
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.44 E-value=43 Score=35.61 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=62.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhc--ccHHHHHHHHHHHH-hCCCCCCHHHHH
Q 002549 531 TPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYN--ERFAEASQVFSDMR-FYNIEPSEDLYR 607 (909)
Q Consensus 531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~-~~~~~p~~~~~~ 607 (909)
...+-..+...+.+.|-..+|...|..+...+ |++...+..+|..=..+ -+..-+..+|+.|. ..| .|+..|.
T Consensus 459 ~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp--p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~ 534 (568)
T KOG2396|consen 459 SVTLKSKYLDWAYESGGYKKARKVYKSLQELP--PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWM 534 (568)
T ss_pred eeehhHHHHHHHHHhcchHHHHHHHHHHHhCC--CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHH
Confidence 34455566667777777788888888877764 66777776666442221 12556667777764 445 6667777
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHH
Q 002549 608 SMVVAYCKMDFPETAHFIADQAEK 631 (909)
Q Consensus 608 ~l~~~~~~~~~~~~a~~~~~~~~~ 631 (909)
..+..-...|.++.+-.++.++.+
T Consensus 535 ~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 535 DYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHhhccCCCcccccHHHHHHHH
Confidence 766666677777777777766654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.26 E-value=1.1 Score=29.14 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 850 DSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 850 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
.++++++.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888999999999999999888875
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=87.18 E-value=62 Score=37.10 Aligned_cols=49 Identities=27% Similarity=0.352 Sum_probs=29.9
Q ss_pred hccCCHHHHHHHHHHHHhcCCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 002549 508 NVSGRHLEACELIEFVKQHASES--------TPPLTQAFIIMLCKAQKLDAALEEYS 556 (909)
Q Consensus 508 ~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~ 556 (909)
.-.+++..+...++.+....... .+.+....+..+...|+++.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 44677888888877776532111 12223333444556888999999887
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.01 E-value=4.4 Score=43.41 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=48.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHH
Q 002549 755 ARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTI 834 (909)
Q Consensus 755 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 834 (909)
.+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|..+.. |.+|+-.+...|+-+.-.
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34555555555544332 334566666666666666666666655543 334444444445444433
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHH
Q 002549 835 QVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHE 874 (909)
Q Consensus 835 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 874 (909)
.+.....+.| ..+..-.+|...|+++++.+++.+
T Consensus 713 ~la~~~~~~g------~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQG------KNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhc------ccchHHHHHHHcCCHHHHHHHHHh
Confidence 3333333321 112222345555666666555544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.93 E-value=20 Score=31.23 Aligned_cols=51 Identities=10% Similarity=-0.139 Sum_probs=31.7
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhc
Q 002549 616 MDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQR 668 (909)
Q Consensus 616 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 668 (909)
.++++++..+++.+.- +.|+...+-..-+..+...|+|.+|..+|+.+.+.
T Consensus 23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3444455544444433 56666666666667777777777777777777654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.42 E-value=9 Score=36.10 Aligned_cols=86 Identities=20% Similarity=0.008 Sum_probs=45.8
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHH
Q 002549 613 YCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYER 692 (909)
Q Consensus 613 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 692 (909)
|.....++.|+.-|.+++. ++|..+.-+..-+-.+.+.++|+.+..-..++++. .+..+.....+..+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-DPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-ChHHHHHHHHHHHHHHhhccccH
Confidence 3344445556655555554 55555555555555555555666555555555554 33333344444555555555555
Q ss_pred HHHHHHHHH
Q 002549 693 ARAVFNTMM 701 (909)
Q Consensus 693 A~~~~~~~~ 701 (909)
|+..+.++.
T Consensus 97 aI~~Lqra~ 105 (284)
T KOG4642|consen 97 AIKVLQRAY 105 (284)
T ss_pred HHHHHHHHH
Confidence 555555553
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.26 E-value=2.4 Score=41.69 Aligned_cols=89 Identities=17% Similarity=0.039 Sum_probs=42.9
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHH
Q 002549 612 AYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYE 691 (909)
Q Consensus 612 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 691 (909)
-|.+.|.+++|+..|...+. +.|-++..+..-+.+|.+.+++..|+.-+..++.. ...-+.+|.--+.+--..|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-DKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-hHHHHHHHHHHHHHHHHHhhHH
Confidence 34445555555555544443 44545555555555555555555555555554433 1112233333333333345555
Q ss_pred HHHHHHHHHHHc
Q 002549 692 RARAVFNTMMRD 703 (909)
Q Consensus 692 ~A~~~~~~~~~~ 703 (909)
+|.+-++..++.
T Consensus 183 EAKkD~E~vL~L 194 (536)
T KOG4648|consen 183 EAKKDCETVLAL 194 (536)
T ss_pred HHHHhHHHHHhh
Confidence 555555555553
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.93 E-value=0.55 Score=46.27 Aligned_cols=89 Identities=11% Similarity=0.073 Sum_probs=51.5
Q ss_pred ccCchHHHHHHHHHHHHCCCCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhH
Q 002549 791 KGKRVRDVEAMVSEMKEAGFKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEG 868 (909)
Q Consensus 791 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A 868 (909)
..|.+++|++.|...++. .|. ...|..-..++.+.++...|+.-+..+++ ++||. ..|-.-+.+....|+|++|
T Consensus 126 n~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 345566666666666552 333 24444445556666666666666666666 66655 4455555555556666666
Q ss_pred HHHHHHHHHcCCCCC
Q 002549 869 LSLMHEMRKLGLEPK 883 (909)
Q Consensus 869 ~~~~~~~~~~~~~p~ 883 (909)
.+.+....+.+..+.
T Consensus 202 a~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 202 AHDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHHhccccHH
Confidence 666666665554444
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.69 E-value=73 Score=36.51 Aligned_cols=166 Identities=10% Similarity=0.108 Sum_probs=84.8
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHH
Q 002549 293 TYNTIIHMYG-KQGQHDVALQLYRDMKLSGRNPDVV-----TYTVLIDSLGKANKISEAANVMSEMLDA----SVKPTLR 362 (909)
Q Consensus 293 ~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ 362 (909)
++-.+...+. ...+++.|...+++.......++.. +...++..+.+.+... |...+++.++. +..+-..
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 4444555554 5667777777776654332222222 1223445555555544 77777665542 1112222
Q ss_pred HHHHH-HHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--HcCCHhHHHHHHHHHHHCC---------C
Q 002549 363 TYSAL-ICGYAKAGNRLEAEKTFYCMRRSG---IRPDHLAYSVMLDIFL--RFNETNKAMMLYQEMVSNG---------F 427 (909)
Q Consensus 363 ~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~---------~ 427 (909)
.|..+ +..+...++...|.+.++.+...- ..|-..++..++.+.. +.+..+++.+.++++.... .
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 33333 222223367777777777766521 2233444444544443 3455566666666663321 1
Q ss_pred CCCHHHHHHHHHHH--hcCCCHHHHHHHHHHHHH
Q 002549 428 TPDQALYEIMIGVL--GRENKGEEIRKVVRDMKE 459 (909)
Q Consensus 428 ~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~ 459 (909)
.|-..+|..+++.+ ...|++..+...++.+.+
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23455666666644 456777777766666554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.65 E-value=6.4 Score=38.54 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=59.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 002549 181 GLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHN---CQP--DLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPD 255 (909)
Q Consensus 181 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 255 (909)
|....+.+...++..-.....++.++.++-++.... ..| +.++|-.++ -.-++++++.++..=..-|+.||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 444445555555555555566677776666665321 111 122222222 22356677777776677777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002549 256 AVTYNSLLYAFAREGNVEKVKEISENMLKMG 286 (909)
Q Consensus 256 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 286 (909)
..+++.+++.+.+.+++.+|.++...|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777777777777777776665543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=85.31 E-value=78 Score=36.52 Aligned_cols=187 Identities=14% Similarity=0.008 Sum_probs=83.4
Q ss_pred hhhcCChHHHHHHHHHHHhcCCCC-----ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH---HHH--HHH
Q 002549 649 YGRLKLWQKAESLVGCLRQRCAPV-----DRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSI---NGL--LQA 718 (909)
Q Consensus 649 ~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l--~~~ 718 (909)
....|+.+.|.++.+..+.. .+. ....+..++.+..-.|++++|..+.....+....-++..+ ..+ ...
T Consensus 468 al~~~~~e~a~~lar~al~~-L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~i 546 (894)
T COG2909 468 ALNRGDPEEAEDLARLALVQ-LPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEI 546 (894)
T ss_pred HHhcCCHHHHHHHHHHHHHh-cccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34456666666666665543 222 2344455556666667777777776666554222222222 111 122
Q ss_pred HHhcCc--hhhHHHHHHHHHhCCC--C----ccHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCchHH--HHHH
Q 002549 719 LIVDGR--LNELYVVIQELQDMDF--K----ISKSSILLMLDAFARSGNIFEVKKIYHGMK----AAGYFPTMY--LYRV 784 (909)
Q Consensus 719 ~~~~g~--~~~A~~~~~~~~~~~~--~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~p~~~--~~~~ 784 (909)
+..+|. +.+....+........ + +-.-+...++.++.+ ++.+..-..... .....|-.. .+..
T Consensus 547 l~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~ 623 (894)
T COG2909 547 LEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSM 623 (894)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHH
Confidence 445552 2222233322221110 1 111233334444433 333322222222 222222111 2235
Q ss_pred HHHHHhccCchHHHHHHHHHHHHCCCCC----CHHhHHHHHHHh--hccCCHHHHHHHHHH
Q 002549 785 MSGLFCKGKRVRDVEAMVSEMKEAGFKP----DLSIWNSMLKLY--TGIEDFKKTIQVYQE 839 (909)
Q Consensus 785 l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~--~~~g~~~~A~~~~~~ 839 (909)
|+..+...|++++|...++++......+ +-.+....+..- ..+||..+|..-..+
T Consensus 624 LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 624 LAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 6677777788888887777775532222 112222222222 234676666655544
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=85.20 E-value=14 Score=35.25 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=45.4
Q ss_pred hHHHHHHHhhccCC-------HHHHHHHHHHHHHcCCCC----C-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 002549 816 IWNSMLKLYTGIED-------FKKTIQVYQEIQEADLQP----D-EDSFNTLIIMYCRDCRPEEGLSLMHEMRKLG 879 (909)
Q Consensus 816 ~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 879 (909)
.+.-+.+.|...|+ +.+|++.|+++.+..-.| + ......++....+.|++++|.++|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34555666777776 566777777777654443 2 2445567788899999999999999999643
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.01 E-value=56 Score=34.62 Aligned_cols=109 Identities=12% Similarity=0.153 Sum_probs=76.1
Q ss_pred HHhccCchHHHHHHHHHHH---HCC--CCCCH---HhHHHHHHHhhccCCHHHHHHHHHHHHH-------cCCCCCh---
Q 002549 788 LFCKGKRVRDVEAMVSEMK---EAG--FKPDL---SIWNSMLKLYTGIEDFKKTIQVYQEIQE-------ADLQPDE--- 849 (909)
Q Consensus 788 ~~~~~g~~~~A~~~~~~~~---~~~--~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~--- 849 (909)
.+.-.|++..|.+++...- +.| ++|.- ..||.++..+...|.+.-+..+|.++++ .|+.|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3445688888888775541 112 12222 2367787777888888888888888774 3666632
Q ss_pred -------hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 002549 850 -------DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQ 897 (909)
Q Consensus 850 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 897 (909)
...++.+-.|...|++-.|.+.|.+..+. +..++-.|-.|+..+...
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 34567788889999999999999998874 455777888888887543
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.00 E-value=43 Score=33.26 Aligned_cols=196 Identities=14% Similarity=0.114 Sum_probs=94.0
Q ss_pred ChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q 002549 618 FPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVF 697 (909)
Q Consensus 618 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 697 (909)
+++.-++....+++ ++|...++|..++.- ...-..+|+.+|+++++.+ ..+|+. -..+..+|...+
T Consensus 199 np~~RI~~A~~ALe--IN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~~~d----- 264 (556)
T KOG3807|consen 199 NPPARIKAAYQALE--INNECATAYVLLAEE--EATTIVDAERLFKQALKAG----ETIYRQ-SQQCQHQSPQHE----- 264 (556)
T ss_pred CcHHHHHHHHHHHh--cCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhccchh-----
Confidence 33333344444444 677777777666542 3345667888888877652 222321 112222232222
Q ss_pred HHHHHcCCCCCcccH--HHHHHHHHhcCchhhHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002549 698 NTMMRDGPSPTVDSI--NGLLQALIVDGRLNELYVVIQELQDMDFKIS-KSSILLMLDAFARSGNIFEVKKIYHGMKAAG 774 (909)
Q Consensus 698 ~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 774 (909)
.+.+++. ++.+| ..|..+-.+.|+..+|.+.++.+.+.-.-.+ -.....++.++....-+.+.-.++.+..+..
T Consensus 265 -a~~rRDt--nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 265 -AQLRRDT--NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred -hhhhccc--chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 2233222 33344 2344444578888888888887765432111 1222346666665555544444444444322
Q ss_pred CCch-HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhH
Q 002549 775 YFPT-MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSF 852 (909)
Q Consensus 775 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 852 (909)
.+.+ ...|.+. +.+ + .+....+.||..+-..|-.+ -..|.+...++++ ++|...-|
T Consensus 342 lPkSA~icYTaA---LLK------~-----RAVa~kFspd~asrRGLS~A------E~~AvEAihRAvE--FNPHVPkY 398 (556)
T KOG3807|consen 342 LPKSAAICYTAA---LLK------T-----RAVSEKFSPETASRRGLSTA------EINAVEAIHRAVE--FNPHVPKY 398 (556)
T ss_pred CcchHHHHHHHH---HHH------H-----HHHHhhcCchhhhhccccHH------HHHHHHHHHHHhh--cCCCCcHH
Confidence 2111 1122211 111 1 12223366776654433222 2347778888888 78865443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.91 E-value=5.3 Score=36.94 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=57.2
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHCCCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh----hhHHHHH
Q 002549 782 YRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE----DSFNTLI 856 (909)
Q Consensus 782 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~ 856 (909)
.+.-+..+.+.+.+.+++.+.++-.+. +| |.-.-..++..||-.|++++|..-++-+-+ +.|+. ..|.+++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHH
Confidence 445566788899999999999887763 45 556778889999999999999999999888 77753 4566666
Q ss_pred HH
Q 002549 857 IM 858 (909)
Q Consensus 857 ~~ 858 (909)
.+
T Consensus 80 r~ 81 (273)
T COG4455 80 RC 81 (273)
T ss_pred HH
Confidence 54
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=84.53 E-value=57 Score=34.30 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=67.9
Q ss_pred hcCCHHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002549 303 KQGQHDVALQL-YRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAE 381 (909)
Q Consensus 303 ~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 381 (909)
..|+.-.|-+- +.-+......|+.+...+. .+...|+++.+.+.+....+. +.....+...+++...+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 45666555443 3333333223444433333 334567888887777665442 2345566777777777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 002549 382 KTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSN 425 (909)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 425 (909)
.+-..|....+. +...........-..|-++++...|++...-
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 877777766553 2222222222233456677777777777643
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.53 E-value=42 Score=32.70 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----cCCCch---HHHHHHHHHHHhccCchHHHHHHHHHHHH----CCCCCCHHhHH
Q 002549 750 MLDAFARSGNIFEVKKIYHGMKA----AGYFPT---MYLYRVMSGLFCKGKRVRDVEAMVSEMKE----AGFKPDLSIWN 818 (909)
Q Consensus 750 l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~ 818 (909)
++..+.+.|.+.+|+.+...+.. .+-.|+ +..+.+ ..|.+.....++..-+..+.. ..++|-...-.
T Consensus 131 li~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllES--Kvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 131 LIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLES--KVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhH--HHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 56667777777777666555432 222232 222221 223333333333333322211 12455444444
Q ss_pred HHHHHh--hccCCHHHHHHHHHHHHH
Q 002549 819 SMLKLY--TGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 819 ~l~~~~--~~~g~~~~A~~~~~~~~~ 842 (909)
.|+.+- |...++..|..+|-++.+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 444432 333466666666666655
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=84.38 E-value=41 Score=34.69 Aligned_cols=26 Identities=4% Similarity=0.092 Sum_probs=19.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002549 749 LMLDAFARSGNIFEVKKIYHGMKAAG 774 (909)
Q Consensus 749 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 774 (909)
.+...+.++|..+.|..+++-+.+..
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 34445567888888888888888743
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.13 E-value=2.3 Score=25.99 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 850 DSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 850 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
.+|..++.+|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3678899999999999999999999885
|
... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.09 E-value=11 Score=40.74 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=49.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 002549 686 ASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKK 765 (909)
Q Consensus 686 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 765 (909)
+.|+++.|.++..+. .+..-|..|..+....|++..|.+.|.+..+.+ .|+-.+...|+-+.-..
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~---------~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARDLG---------SLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcchh---------hhhhhhhhcCChhHHHH
Confidence 445566555554443 134456666666666666666665555544322 34444455555554444
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHH
Q 002549 766 IYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEM 805 (909)
Q Consensus 766 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 805 (909)
+-....+.|. .|....+|...|+++++++++.+-
T Consensus 714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 4444444331 122223344566666666665544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.04 E-value=17 Score=35.74 Aligned_cols=100 Identities=15% Similarity=0.151 Sum_probs=59.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002549 286 GFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVV-----TYTVLIDSLGKANKISEAANVMSEMLDASVKPT 360 (909)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 360 (909)
|.+.+..+-..++..-....+++.+...+-++... |+.. +-.++++. +-.-+.++++.++..=+.-|+.||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs---~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHS---PNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcC---cchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccc
Confidence 44455555556666555566777777777666543 2211 11112222 223355677777766667777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002549 361 LRTYSALICGYAKAGNRLEAEKTFYCMRR 389 (909)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 389 (909)
..++..++..+.+.+++.+|.++...|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 77777777777777777777766665554
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.96 E-value=1.4 Score=25.06 Aligned_cols=22 Identities=18% Similarity=0.150 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHH
Q 002549 852 FNTLIIMYCRDCRPEEGLSLMH 873 (909)
Q Consensus 852 ~~~l~~~~~~~g~~~~A~~~~~ 873 (909)
...++.++...|++++|...++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445555555555555555443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.86 E-value=2.1 Score=25.85 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=14.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002549 679 ALIKAYAASGCYERARAVFNTMMRDGP 705 (909)
Q Consensus 679 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 705 (909)
.++.++...|++++|.+.|+++++..|
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 344455555555666666555555443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.82 E-value=65 Score=34.38 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=69.4
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHH---HHHcCCHHHHHHHHHHHHHcCCCCCcc
Q 002549 634 IPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKA---YAASGCYERARAVFNTMMRDGPSPTVD 710 (909)
Q Consensus 634 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~ 710 (909)
..|+..+.-..+.+.+.+.|-+.+|...+..+... +|++...+..++.. ...+| ...+..+++.+....- .++.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg-~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG-ADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC-CChH
Confidence 45666667777788888888899999999988877 67788888777753 22334 7788888888877633 3666
Q ss_pred cHHHHHHHHHhcCchhhHHHHHHHHH
Q 002549 711 SINGLLQALIVDGRLNELYVVIQELQ 736 (909)
Q Consensus 711 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 736 (909)
.|-..+..-..+|..+.+-.++.++.
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHH
Confidence 67665555556666666665555543
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.81 E-value=8.4 Score=41.22 Aligned_cols=110 Identities=13% Similarity=0.024 Sum_probs=76.3
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 002549 675 KVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAF 754 (909)
Q Consensus 675 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 754 (909)
.+.|..+-.....|+...|...+..+....|.-+-++...|.+.+.+.|-..+|..++.+..... ...+.++..+..++
T Consensus 608 ~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~ 686 (886)
T KOG4507|consen 608 LILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAY 686 (886)
T ss_pred EEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhH
Confidence 33343333344568888888888888776666666777788888888888888888888777655 44456677778888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 002549 755 ARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMS 786 (909)
Q Consensus 755 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 786 (909)
....+++.|++.|++..+.. +-+++.-+.|.
T Consensus 687 l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~ 717 (886)
T KOG4507|consen 687 LALKNISGALEAFRQALKLT-TKCPECENSLK 717 (886)
T ss_pred HHHhhhHHHHHHHHHHHhcC-CCChhhHHHHH
Confidence 88888888888888887743 12344444443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.66 E-value=34 Score=31.77 Aligned_cols=72 Identities=19% Similarity=0.070 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHH
Q 002549 203 EEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESK---GFFPDAVTYNSLLYAFAREGNVEKV 275 (909)
Q Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~a 275 (909)
+.|...|-.+...+..-++.....|...| ...+.++++.++.+..+. +-.+|+..+.+|++.+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44555555555444333333333333332 244555555555544432 1134444555555555555554443
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.64 E-value=2.1 Score=44.62 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=56.9
Q ss_pred hccCchHHHHHHHHHHHHCCCCCCHHhHHHHH-HHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhh
Q 002549 790 CKGKRVRDVEAMVSEMKEAGFKPDLSIWNSML-KLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEE 867 (909)
Q Consensus 790 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 867 (909)
.+.+.++.|..++.++++ ..||...|.+.- .++.+.+++..|+.=+.++++ +.|.. ..|..-+.++...+++.+
T Consensus 15 l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHHHHHH
Confidence 345556666666666665 455554433332 456666666666666666666 55643 556566666666666666
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHH
Q 002549 868 GLSLMHEMRKLGLEPKLDTYKSLISAF 894 (909)
Q Consensus 868 A~~~~~~~~~~~~~p~~~~~~~l~~~~ 894 (909)
|+..|+... -+.|+.......++-+
T Consensus 91 A~~~l~~~~--~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 91 ALLDLEKVK--KLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHhh--hcCcCcHHHHHHHHHH
Confidence 666666655 3455554444444444
|
|
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.57 E-value=48 Score=32.67 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=36.0
Q ss_pred HcCCHHHHHHHH-HHHHHCCCCCCHH----HHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 002549 268 REGNVEKVKEIS-ENMLKMGFGKDEM----TYNTIIHMYGKQGQ-HDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANK 341 (909)
Q Consensus 268 ~~g~~~~a~~~~-~~~~~~~~~~~~~----~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 341 (909)
+...+++..... ++|.+.++ |+.. +|+.+|++---..+ ---|.+.++.+ .+|..|+.++|.+|+
T Consensus 267 ~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQ 336 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCCh
Confidence 334445544444 34555554 4433 56666665322211 11123333333 368888999999988
Q ss_pred HHHHH
Q 002549 342 ISEAA 346 (909)
Q Consensus 342 ~~~A~ 346 (909)
.+-.+
T Consensus 337 sEL~L 341 (412)
T KOG2297|consen 337 SELEL 341 (412)
T ss_pred HHHHH
Confidence 77554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.56 E-value=1.8 Score=27.99 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=20.8
Q ss_pred HhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 002549 815 SIWNSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 815 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
.+++.++.+|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567777888888888888888888765
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.49 E-value=67 Score=34.30 Aligned_cols=166 Identities=10% Similarity=0.014 Sum_probs=89.8
Q ss_pred CCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Q 002549 636 FEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGL 715 (909)
Q Consensus 636 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 715 (909)
|-+...+..++..++...+++-.+.++.+++.. ..+-..+..++.+|... ..++-..+|+++.+...+ +++--.-|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 334445555666666666666666666666654 23555666667776666 445666677766665544 44333344
Q ss_pred HHHHHhcCchhhHHHHHHHHHhCCCCc--c---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCchHHHHHHHHHHH
Q 002549 716 LQALIVDGRLNELYVVIQELQDMDFKI--S---KSSILLMLDAFARSGNIFEVKKIYHGMKA-AGYFPTMYLYRVMSGLF 789 (909)
Q Consensus 716 ~~~~~~~g~~~~A~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~ 789 (909)
+..|.+ ++.+.+...|.++...-++- + ...+..+... -..+.+....+..++.. .|..-....+.-+..-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 443433 66666666666655432220 0 0111111110 13455555555555553 34334445555555666
Q ss_pred hccCchHHHHHHHHHHHHC
Q 002549 790 CKGKRVRDVEAMVSEMKEA 808 (909)
Q Consensus 790 ~~~g~~~~A~~~~~~~~~~ 808 (909)
....++++|++++..+++.
T Consensus 216 s~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 216 SENENWTEAIRILKHILEH 234 (711)
T ss_pred ccccCHHHHHHHHHHHhhh
Confidence 6777777777777766653
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=82.81 E-value=12 Score=36.37 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=57.7
Q ss_pred HHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh-----
Q 002549 716 LQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFC----- 790 (909)
Q Consensus 716 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----- 790 (909)
|.++++.++|.+++.+.-+--+..-+..+.+....|-.|.+.|......++-...+...-+-+..-|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 467777888888777766655544445556666667778888888888888777776321222233665555544
Q ss_pred ccCchHHHHHHH
Q 002549 791 KGKRVRDVEAMV 802 (909)
Q Consensus 791 ~~g~~~~A~~~~ 802 (909)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 568888888877
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=82.57 E-value=2.3 Score=28.03 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcC
Q 002549 853 NTLIIMYCRDCRPEEGLSLMHEMRKLG 879 (909)
Q Consensus 853 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 879 (909)
..|+.+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 356777888888888888888777543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.56 E-value=0.35 Score=42.92 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=48.9
Q ss_pred HHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCc
Q 002549 645 IIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGR 724 (909)
Q Consensus 645 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 724 (909)
++..+.+.+.......+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34556666677777777777776555566778888888888877766666666521 11233345555555665
Q ss_pred hhhHHHHHH
Q 002549 725 LNELYVVIQ 733 (909)
Q Consensus 725 ~~~A~~~~~ 733 (909)
+++|.-++.
T Consensus 86 ~~~a~~Ly~ 94 (143)
T PF00637_consen 86 YEEAVYLYS 94 (143)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.41 E-value=10 Score=34.93 Aligned_cols=73 Identities=5% Similarity=-0.043 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhccCchHHHH
Q 002549 726 NELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA---AGYFPTMYLYRVMSGLFCKGKRVRDVE 799 (909)
Q Consensus 726 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~ 799 (909)
++|...|-++...+.-.++.....|+..|. ..|.++++.++.+.++ .+-.+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455555555555543333333344443333 5677777777777765 222456667777777777777766653
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=81.76 E-value=7.5 Score=32.92 Aligned_cols=71 Identities=6% Similarity=0.114 Sum_probs=36.4
Q ss_pred CchHHHHHHHHHHHhccCchH---HHHHHHHHHHHCCCCCCH--HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh
Q 002549 776 FPTMYLYRVMSGLFCKGKRVR---DVEAMVSEMKEAGFKPDL--SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE 849 (909)
Q Consensus 776 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 849 (909)
.++..+-..+..++.++.+.+ +.+.++++..+. -.|+. .....|.-+|.+.+++++++++.+.+++ ..||+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCc
Confidence 355555555666665554433 344555555541 12222 2333344456666666666666666666 55544
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.51 E-value=65 Score=32.71 Aligned_cols=50 Identities=16% Similarity=0.020 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC
Q 002549 654 LWQKAESLVGCLRQRCAPVDRKVWNALIKAYAA----SGCYERARAVFNTMMRDGPS 706 (909)
Q Consensus 654 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 706 (909)
+..+|...++...+.| .+.....|..+|.. ..+..+|...|+++.+.|..
T Consensus 92 ~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 92 DKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred cHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh
Confidence 4555666666554443 33334445555544 23666777777777666554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.08 E-value=37 Score=29.67 Aligned_cols=55 Identities=16% Similarity=0.090 Sum_probs=33.2
Q ss_pred hhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002549 649 YGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDG 704 (909)
Q Consensus 649 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 704 (909)
-....+.+++..++..+.-. .|.....-..-+..+...|+|++|.++|+...+.+
T Consensus 20 aL~~~d~~D~e~lLdALrvL-rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVL-RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 34466777777777776543 23233333333445667778888888887776544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.79 E-value=8.2 Score=41.28 Aligned_cols=103 Identities=17% Similarity=0.080 Sum_probs=74.3
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 002549 474 KGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALE 553 (909)
Q Consensus 474 ~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 553 (909)
..|....|...+..+.........+.+..+.+...+.|...+|..++.+.+... .+.+.+...+..+|....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 356677888887777665554455566777778888888888888888777765 4455666777888888888888888
Q ss_pred HHHHhhccCCcccchhhHHHHHHHHH
Q 002549 554 EYSNAWGFGFFSKSKTMYESLIHSCE 579 (909)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~li~~~~ 579 (909)
.|+.+.+.. |.+++.-+.|...-|
T Consensus 698 ~~~~a~~~~--~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLT--TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcC--CCChhhHHHHHHHHH
Confidence 888888776 667777666654443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=80.74 E-value=1.1e+02 Score=34.95 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=21.9
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 002549 402 MLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGR 443 (909)
Q Consensus 402 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 443 (909)
+|-.|.|+|++++|.++..+... ........+...+..+..
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHh
Confidence 45566677777777777744332 223333445555555544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.51 E-value=14 Score=36.63 Aligned_cols=78 Identities=8% Similarity=0.147 Sum_probs=61.1
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHH-cCCCCChhhHHHHHHHH
Q 002549 817 WNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRK-LGLEPKLDTYKSLISAF 894 (909)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~ 894 (909)
.+.+-.+|.+.++++.|+...+.++. +.|+. .-+.-.+-.|.+.|.+..|..-++..++ ....|+.......+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 34566678889999999999999999 89964 6677788999999999999998888875 44566666666666555
Q ss_pred hc
Q 002549 895 GK 896 (909)
Q Consensus 895 ~~ 896 (909)
..
T Consensus 262 ~~ 263 (269)
T PRK10941 262 EQ 263 (269)
T ss_pred hh
Confidence 43
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=80.10 E-value=89 Score=33.45 Aligned_cols=91 Identities=10% Similarity=0.053 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 002549 535 TQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYC 614 (909)
Q Consensus 535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 614 (909)
..++++.+..+....-...+..++...+ .+...+..++.+|..+ ..+.-..+++++.+.. -|.......+..+.
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~y 142 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADKY 142 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHHH
Confidence 3344444444444444455555555432 3444555555555554 3334444455444322 22222222222222
Q ss_pred hcCChhhHHHHHHHHHH
Q 002549 615 KMDFPETAHFIADQAEK 631 (909)
Q Consensus 615 ~~~~~~~a~~~~~~~~~ 631 (909)
..++.+.+..+|.+++.
T Consensus 143 Ekik~sk~a~~f~Ka~y 159 (711)
T COG1747 143 EKIKKSKAAEFFGKALY 159 (711)
T ss_pred HHhchhhHHHHHHHHHH
Confidence 23444455555554443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.01 E-value=87 Score=33.28 Aligned_cols=120 Identities=9% Similarity=-0.066 Sum_probs=72.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCccc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHh-------CCCCCCHH
Q 002549 540 IMLCKAQKLDAALEEYSNAWGFGFFSK--------SKTMYESLIHSCEYNERFAEASQVFSDMRF-------YNIEPSED 604 (909)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~p~~~ 604 (909)
..+.-.|++.+|.+++....-.. .+. ....||.|.-.+.+.|.+.-+..+|..... .|++|...
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~-~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHK-EAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHhcchHHHHHHHHhccccc-ccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 34556788888888776543221 111 234467776666667777777777665542 12221100
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHH
Q 002549 605 LYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAY 684 (909)
Q Consensus 605 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 684 (909)
..+ ..-....+.+..+-.|...|+.-.|.+.|.+..+. +..++..|--|..+|
T Consensus 327 ------------------~tl--------s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 327 ------------------FTL--------SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECC 379 (696)
T ss_pred ------------------eeh--------hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHH
Confidence 000 01123445666777788888888888888888766 666888898888888
Q ss_pred HHc
Q 002549 685 AAS 687 (909)
Q Consensus 685 ~~~ 687 (909)
+..
T Consensus 380 ima 382 (696)
T KOG2471|consen 380 IMA 382 (696)
T ss_pred HHH
Confidence 653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 96.0 bits (237), Expect = 2e-20
Identities = 34/331 (10%), Positives = 96/331 (29%), Gaps = 26/331 (7%)
Query: 178 RRSGLRPDIITYNTIISACSRESNLEEAMKV---YGDLEAHNCQPDLWTYNAMISVYGRC 234
++ L C L A + + L YNA++ + R
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 235 GLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGN-VEKVKEISENMLKMGFGKDEMT 293
G F++ + ++ G PD ++Y + L R+ ++ E M + G +
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 294 YNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEML 353
++ + ++ L + P V + L+ + + + +
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
Query: 354 DASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETN 413
+ + L + + ++ + L +
Sbjct: 299 TLQCLFEKQLHMELAS-RVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKAL-------C 350
Query: 414 KAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILV 473
+A+ + + + + +L E+ + +Q + ++
Sbjct: 351 RALRETKNRLEREVYEGRFSLYPFLCLLDER--------------EVVRMLLQVLQALPA 396
Query: 474 KGECYDHAAEILRSAIRNGIELDHEKLLSIL 504
+GE + A L + + + +++ +
Sbjct: 397 QGESFTTLARELSARTFSRHVVQRQRVSGQV 427
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.6 bits (202), Expect = 4e-16
Identities = 31/289 (10%), Positives = 74/289 (25%), Gaps = 37/289 (12%)
Query: 172 DLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVY 231
L + R++ P ++ + +L+ G A
Sbjct: 78 CLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCC 137
Query: 232 GRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDE 291
A L +
Sbjct: 138 LLTDQLPLAHHLLVVHH--------------------------------GQRQKRKLLTL 165
Query: 292 MTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAAN-VMS 350
YN ++ + +QG + + +K +G PD+++Y + +G+ ++ + +
Sbjct: 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLE 225
Query: 351 EMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFN 410
+M +K + L+ +A K P + S +L +
Sbjct: 226 QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285
Query: 411 ETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKE 459
L+ + + ++ L+ + + K KE
Sbjct: 286 GRVSYPKLHLPLKTLQCLFEKQLHMELAS----RVCVVSVEKPTLPSKE 330
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.6 bits (202), Expect = 4e-16
Identities = 33/296 (11%), Positives = 80/296 (27%), Gaps = 12/296 (4%)
Query: 121 MGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRR- 179
+ Q + L + + L LL
Sbjct: 99 LQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQL--PLAHHLLVVHHGQ 156
Query: 180 --SGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLF 237
+ YN ++ +R+ +E + V ++ PDL +Y A + GR
Sbjct: 157 RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQD 216
Query: 238 EKA-EQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNT 296
E+ +++ +G A+ LL R ++ V ++ + +
Sbjct: 217 AGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSK 276
Query: 297 IIHMYGKQGQHDVALQLYRDMKLSGRNPDV-----VTYTVLIDSLGKANKISEAANVMSE 351
++ + +L+ +K + + V + S+ K S+ +
Sbjct: 277 LLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARK 336
Query: 352 MLDASVKP-TLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIF 406
L AL + + + + + ++ +
Sbjct: 337 TLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQ 392
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.0 bits (185), Expect = 3e-14
Identities = 39/287 (13%), Positives = 88/287 (30%), Gaps = 6/287 (2%)
Query: 13 RERVKFLTDKILGLRENQFVADVLDERSVQMTPTDYCFVVKWVGQVSWQRALEVYEWLNL 72
R + ++L + + D + +++ + +
Sbjct: 60 LTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHS 119
Query: 73 RHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDD----TVQVYNAMMGIYARNG 128
+ S + L +Q LA + T+ +YNA+M +AR G
Sbjct: 120 QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG 179
Query: 129 RFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIIT 188
F+++ +L +++ G PDL+S+ + R + L ++ + GL+ +
Sbjct: 180 AFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTI-ERCLEQMSQEGLKLQALF 238
Query: 189 YNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELE 248
++S R + L+ KV P + ++ +L
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLP-L 297
Query: 249 SKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYN 295
+ L + +VEK S+ + +
Sbjct: 298 KTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQ 344
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.5 bits (163), Expect = 2e-11
Identities = 36/320 (11%), Positives = 88/320 (27%), Gaps = 13/320 (4%)
Query: 534 LTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSD 593
L + + Q+L A L+ + F ++ + L+ A +
Sbjct: 30 LEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSK-------QMAGCLEDC 82
Query: 594 MRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLK 653
R P E+ ++ + + Q + + +
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLS-GQQQRLLAFFKCCLLTD 141
Query: 654 LWQKAESLVGCLRQRCA---PVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVD 710
A L+ + + ++NA++ +A G ++ V + G +P +
Sbjct: 142 QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201
Query: 711 SINGLLQALIVDGRLNELYV-VIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHG 769
S LQ + + ++++ K+ ++L R+ + V K+
Sbjct: 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261
Query: 770 MKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIED 829
P + K R + + + L +
Sbjct: 262 FSLPPQLPPPVNTSKLLRDVYA-KDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVS 320
Query: 830 FKKTIQVYQEIQEADLQPDE 849
+K +E++ A
Sbjct: 321 VEKPTLPSKEVKHARKTLKT 340
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.1 bits (141), Expect = 7e-09
Identities = 19/163 (11%), Positives = 54/163 (33%), Gaps = 4/163 (2%)
Query: 751 LDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMV---SEMKE 807
L ++ + A ++ ++ ++
Sbjct: 99 LQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQ 158
Query: 808 AGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEE 867
L ++N+++ + FK+ + V +++A L PD S+ + R +
Sbjct: 159 KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG 218
Query: 868 GLS-LMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEELLKS 909
+ + +M + GL+ + L+S + L+ ++ +
Sbjct: 219 TIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.4 bits (187), Expect = 2e-14
Identities = 88/657 (13%), Positives = 175/657 (26%), Gaps = 193/657 (29%)
Query: 86 ILAVLGKANQENL---AVETFMRA---ESAVDDTVQVYNAMMGIYARNGRFQKVQELLDL 139
IL+V A +N V+ ++ + +D + +A+ G L
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL----------RLFWT 70
Query: 140 MRKRGCE------PDLVSFN-TLINARLRSGAMVPNLGVDLLNEVRRSGLR--PDIITYN 190
+ + E +++ N + + +++ P++ + E R YN
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 191 TIISACSRE---SNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGR--CGLFEK---AEQ 242
SR L +A+ +P + + G G K A
Sbjct: 131 V-----SRLQPYLKLRQALL--------ELRPAKN-----VLIDGVLGSG---KTWVALD 169
Query: 243 LFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYG 302
+ + + + + +L N + + E + K+ + D + H
Sbjct: 170 VCLSYKVQCKMDFKIFWLNL-------KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 303 -KQGQHDVALQLYRDMKLSG-----------RNPDVVTY-----TVLI--------DSLG 337
K H + +L R +K +N +L+ D L
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 338 KANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHL 397
A + +++ E P L
Sbjct: 283 AATTTHI---SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT---------TNPRRL 330
Query: 398 A-----YSVMLDIFLRFNETN-KAMMLYQEMVSNGFTPD--QALYE----------IMIG 439
+ L + + N + E N P + +++ I
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 440 VLGR---ENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEI-LRSAIRNGIEL 495
+L + ++ VV + + S + Q S + + L+ + N L
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-----ISIPSIYLELKVKLENEYAL 445
Query: 496 DHEKLLSILSSYNVS---------------------GRHLEACELIEFVKQHASESTPPL 534
H I+ YN+ G HL+ E E
Sbjct: 446 -HRS---IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH--------PERMTLF 493
Query: 535 TQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDM 594
F LD F F + K + H +
Sbjct: 494 RMVF---------LD-----------FRFL-EQK-----IRHDSTAWNASGSILNTLQQL 527
Query: 595 RFYN--IEPSEDLYRSMVVAYCKMDF---PETAHFIADQAE--KKGIPFEDLSIYVD 644
+FY I ++ Y +V A +DF E + + + + ED +I+ +
Sbjct: 528 KFYKPYICDNDPKYERLVNAI--LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 1e-13
Identities = 83/661 (12%), Positives = 189/661 (28%), Gaps = 176/661 (26%)
Query: 299 HMYGKQGQHDVALQLYRDMKLSGRNPDVVT----YTVLIDSLGKANKISEAANVMSEMLD 354
HM + G+H Y+D+ LS V V D E +++
Sbjct: 6 HMDFETGEHQYQ---YKDI-LSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMS--K 58
Query: 355 ASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLD-IFLRFNETN 413
+V TLR + L + E+ +R + Y ++ I + +
Sbjct: 59 DAVSGTLRLFWTL---------LSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPS 106
Query: 414 KAMMLYQEMVSNGFTPDQAL--YEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEIS-- 469
+Y E + +Q Y + R ++R+ + +++ + + +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 470 --SILVKGECYDHAAEILRSA----IRNGIELDHEKLLSILSS--YNVSGRHLEACELIE 521
+ + C + + + E +L +L Y + +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 522 FVKQHASE---------STPPLTQAFIIM--LCKAQKLDAALEEYSNAWGFGFFSKSKTM 570
+K + P +++ + A+ +A F K +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA----------FNL--SCKIL 269
Query: 571 ----YESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKM---DFPETAH 623
++ + + + D + P E S+++ Y D P
Sbjct: 270 LTTRFKQVTDFLSAATT----THISLDHHSMTLTPDEVK--SLLLKYLDCRPQDLPREV- 322
Query: 624 FIADQAEKKGIPF------EDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVW 677
P E + + D + + + + L RK++
Sbjct: 323 -------LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 678 NALIKAYAASGCYERARAVFN--------TMMR---DGPSPTVDSI-NGLLQALIVDGRL 725
+ L +VF + D V + N L + +V+ +
Sbjct: 376 DRL--------------SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 726 NELYVVIQELQ-DMDFKISKSSIL--LMLDAF----ARSGNIFEVKKI---------YHG 769
E + I + ++ K+ L ++D + + + +H
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH- 480
Query: 770 MKAAGY------FPTMYL-YRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLK 822
+K + F ++L +R F + K + D + WN+
Sbjct: 481 LKNIEHPERMTLFRMVFLDFR-----FLEQK----------------IRHDSTAWNASGS 519
Query: 823 LYTGIEDFKKTIQVYQE-IQEADLQPDEDSFNTLI--------IMYCRDCRPEEGLSLMH 873
+ ++ K Y+ I + D + + N ++ + C ++LM
Sbjct: 520 ILNTLQQLKF----YKPYICDNDPKYER-LVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Query: 874 E 874
E
Sbjct: 575 E 575
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 4e-11
Identities = 81/505 (16%), Positives = 144/505 (28%), Gaps = 121/505 (23%)
Query: 2 TKLALKRAKDWRERVKFLTDKILGLRENQFV--------------ADVLDERSVQMTPTD 47
K + R + L +L LR + V DV VQ
Sbjct: 127 AKYNVSR----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 48 YCFVVKWVGQVSWQRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAE 107
+++ WLNL++ SP + + L +
Sbjct: 183 -----------------KIF-WLNLKNCNSPETVL----------EMLQKLLYQIDPNWT 214
Query: 108 SAVDDTVQVYNAMMGIYARNGRFQKVQE----LLDLMRKRG-CEPDLV-SFN----TLIN 157
S D + + + I A R K + LL L +FN L+
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL---LNVQNAKAWNAFNLSCKILLT 271
Query: 158 ARLRSGA--MVPNLGVDLLNEVRRSGLRPDIITYNT--IISAC--SRESNL-EEAMKV-- 208
R + + + + L PD ++ R +L E +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPD----EVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 209 -----YGD-LEAHNCQPDLW---TYNAMISVYGRC-GLFEKAE--QLFKELESKGFFPDA 256
+ + D W + + ++ + E AE ++F L FP +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL---SVFPPS 384
Query: 257 VTYN---SLLYAFAREGNVEKVKEISENMLKMGF---GKDEMTYNTIIHMY--------G 302
+ LL + V + + K E T +I +Y
Sbjct: 385 A--HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLEN 441
Query: 303 KQGQHDVALQLYRDMK------LSGRNPDVVTYTVLIDSLGKANKISEAANVMSEM-LDA 355
+ H + Y K L D Y+ + L E + + LD
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH-PERMTLFRMVFLDF 500
Query: 356 S-VKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRF---NE 411
++ +R S N L+ K FY + I + Y +++ L F E
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLK-FY---KPYICDNDPKYERLVNAILDFLPKIE 556
Query: 412 TNKAMMLYQEMVSNGF-TPDQALYE 435
N Y +++ D+A++E
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIFE 581
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 32/159 (20%)
Query: 184 PDIIT-YNTIISACSRESNLEEAM-----------KVYGDLEAHNCQPD-LWTYNAMISV 230
PD+ T N + ++ +EA K G + H P T N + +
Sbjct: 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG--KDH---PAVAATLNNLAVL 94
Query: 231 YGRCGLFEKAEQLFKE-LE-SKGFF----PD-AVTYNSLLYAFAREGNVEKVKEISENML 283
YG+ G +++AE L K LE + PD A N+L +G E+V+ L
Sbjct: 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154
Query: 284 KMG---FGKDE----MTYNTIIHMYGKQGQHDVALQLYR 315
++ G D+ T N + Y KQG++ A LY+
Sbjct: 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYK 193
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 27/158 (17%), Positives = 44/158 (27%), Gaps = 31/158 (19%)
Query: 184 PDI-ITYNTIISACSRESNLEEAM-----------KVYGDLEAHNCQPD-LWTYNAMISV 230
PD+ N + C + EE G P+ T N + S
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG--PDD---PNVAKTKNNLASC 178
Query: 231 YGRCGLFEKAEQLFK----ELESKGFFPD----AVTYNSLLYAFAREGNVEKVKEISENM 282
Y + G ++ AE L+K K F + + E
Sbjct: 179 YLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG 238
Query: 283 LKM-GFGKD----EMTYNTIIHMYGKQGQHDVALQLYR 315
D T ++ +Y +QG+ + A L
Sbjct: 239 SWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLED 276
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 27/162 (16%), Positives = 45/162 (27%), Gaps = 39/162 (24%)
Query: 184 PDI-ITYNTIISACSRESNLEEAM-----------KVYGDLEAHNCQPD-LWTYNAMISV 230
PD+ N + C + EE G P+ T N + S
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG--PDD---PNVAKTKNNLASC 204
Query: 231 YGRCGLFEKAEQLFK----ELESKGFFPD----AVTYNSLLYAFAREGNVEK-----VKE 277
Y + G F++AE L+K + F + +G +
Sbjct: 205 YLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264
Query: 278 ISENMLKMGFGKD----EMTYNTIIHMYGKQGQHDVALQLYR 315
D T + +Y +QG+ + A L
Sbjct: 265 GWYKAC----KVDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 8e-04
Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 20/134 (14%)
Query: 199 ESNLEEAMKVYGDL--EAHNCQPD-LWTYNAMISVYGRCGLFEKAEQLFKE-LE-SKGFF 253
+ +Y P L T + ++ Y G +E A L K+ LE +
Sbjct: 5 HHHSSGRENLYFQGGGYEI---PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS 61
Query: 254 ----PD-AVTYNSLLYAFAREGNVEKVKEISENMLKMG---FGKDE----MTYNTIIHMY 301
PD A N L + + + + + L + GKD T N + +Y
Sbjct: 62 GHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY 121
Query: 302 GKQGQHDVALQLYR 315
GK+G++ A L +
Sbjct: 122 GKRGKYKEAEPLCK 135
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Length = 1630 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 54/324 (16%), Positives = 110/324 (33%), Gaps = 47/324 (14%)
Query: 604 DLYRSMVVA-YCKMDFPETAHFIADQAE---------KKGIPFEDLSIYVDIIDAYGRLK 653
Y S VV YC+ P A ++ + + F+ LS Y + +
Sbjct: 898 PYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRY---LVRRKDPE 954
Query: 654 LWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSIN 713
LW L+ R +D+ V AL + F M D P+ ++
Sbjct: 955 LWGSV--LLESNPYRRPLIDQVVQTALSETQDPE-EVSVTVKAF--MTADLPNELIE--- 1006
Query: 714 GLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAA 773
LL+ +++D + + +Q L + + + ++ + + ++ I + +
Sbjct: 1007 -LLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVM---EYINRLDNYDAPDIANIAISN 1062
Query: 774 GYFPTM-YLYRVMSGLFCKGKRVRDVEAMVSEMK------EAGFKPDLS-IWNSMLKLYT 825
F ++R V+ ++ + E + + +W+ + K
Sbjct: 1063 ELFEEAFAIFRKF------DVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQL 1116
Query: 826 GIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLD 885
K+ I Y + D S+ ++ EE + + RK E ++
Sbjct: 1117 QKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE 1170
Query: 886 TYKSLISAFGKQQQLEQAEELLKS 909
T LI A K +L + EE +
Sbjct: 1171 T--ELIFALAKTNRLAELEEFING 1192
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 909 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.84 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.68 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.64 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.62 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.61 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.61 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.61 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.58 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.54 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.54 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.49 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.25 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.13 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.09 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.06 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.0 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.98 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.95 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.91 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.85 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.8 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.79 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.78 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.77 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.71 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.56 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.46 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.45 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.43 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.42 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.41 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.39 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.39 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.37 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.36 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.33 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.28 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.28 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.25 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.23 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.08 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.99 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.99 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.96 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.94 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.85 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.78 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.37 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.32 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.15 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.46 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.64 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.14 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.42 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.9e-28 Score=188.26 Aligned_cols=378 Identities=12% Similarity=0.056 Sum_probs=219.8
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 86049878899999999841799993228999999981188999999999862058766644319999999980266778
Q 002549 507 YNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAE 586 (909)
Q Consensus 507 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 586 (909)
+.+.|++++|...++.+++..|. +...+..++..+...|++++|+..|+++.+.. |.+..+|..++.++...|++++
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99869999999999999986899-89999999999998699999999999999859--9989999999999642000222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999998858988889889999999850499656999999998849999982479999999620188678999999998
Q 002549 587 ASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLR 666 (909)
Q Consensus 587 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 666 (909)
|+..+........ .+...................+......... ..+................+....+...+....
T Consensus 86 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 86 AIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 2222221211222-2222222222222222222222222111222--222222222222222211000135678888740
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 44799875859999999997199899999999979749999822099999999940833059999999873999862899
Q 002549 667 QRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSS 746 (909)
Q Consensus 667 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 746 (909)
.. .|.+...+..++..+...|+++.|...++++++..|. +...+..++..+...|++++|...+++....+ +.....
T Consensus 163 ~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 163 ET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred CC-CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHH
T ss_conf 25-8610689986363010247199999999999984946-49999997155220052999999999857775-547999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 99999999920799889999999886598852788999999986257337899999999987988897749999999615
Q 002549 747 ILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTG 826 (909)
Q Consensus 747 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 826 (909)
+..++.++...|++++|...++++.+.. +.+...+..++..+...|++++|++.++.+... .+.+...+..++.++..
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHH
T ss_conf 9999999998789999999999999849-998999999999999748799999999865404-87300101579999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCC
Q ss_conf 48878899999999983999784-2299999999934991659999999997399988-2439999998840599
Q 002549 827 IEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK-LDTYKSLISAFGKQQQ 899 (909)
Q Consensus 827 ~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 899 (909)
.|++++|++.++++++ +.|+. .++..++.+|...|++++|.+.++++. .+.|+ ...|..++.+|.+.|+
T Consensus 318 ~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI--RISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH--TTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHCCC
T ss_conf 7899999999999998--688989999999999998599999999999999--7099989999999999998589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.4e-27 Score=181.40 Aligned_cols=220 Identities=9% Similarity=0.062 Sum_probs=130.3
Q ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 98247999999962018867899999999844799875859999999997199899999999979749999822099999
Q 002549 637 EDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLL 716 (909)
Q Consensus 637 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 716 (909)
+....+..++..+...+++++|...++++++. .|.+...+..++.++...|++++|...+.+.....+. ....+..++
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 244 (388)
T d1w3ba_ 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLA 244 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 10689986363010247199999999999984-9464999999715522005299999999985777554-799999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf 99994083305999999987399986289999999999920799889999999886598852788999999986257337
Q 002549 717 QALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVR 796 (909)
Q Consensus 717 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 796 (909)
.++...|++++|+..++++.+.. +.+...+..++.++...|++++|...++...... +.+...+..++..+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 322 (388)
T d1w3ba_ 245 CVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHCCCHH
T ss_conf 99998789999999999999849-9989999999999997487999999998654048-730010157999999878999
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHCCC
Q ss_conf 899999999987988897-74999999961548878899999999983999784-229999999993499
Q 002549 797 DVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCR 864 (909)
Q Consensus 797 ~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 864 (909)
+|+..++++++ ..|+. .++..++.+|...|++++|++.|+++++ +.|+. .++..++.+|.+.|+
T Consensus 323 ~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 323 EAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999998--6889899999999999985999999999999997--099989999999999998589
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.1e-18 Score=129.77 Aligned_cols=265 Identities=12% Similarity=0.062 Sum_probs=151.5
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 85049965699999999884999998247999999962018867899999999844799875859999999997199899
Q 002549 613 YCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYER 692 (909)
Q Consensus 613 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 692 (909)
+...|++++|+..++.+++ ..|++..++..++.++...|++++|...+.++++. .|.+...+..++.++...|++++
T Consensus 29 ~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~ 105 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQ--QDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-KPDNQTALMALAVSFTNESLQRQ 105 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9985999999999999998--68998999999999999837758899999851002-22222222222222222221121
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999997974999982209999999994083305999999987399986289999999999920799889999999886
Q 002549 693 ARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA 772 (909)
Q Consensus 693 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 772 (909)
|.+.++.+....+.. ...+........ ..+.......+..+...+...++...+.++..
T Consensus 106 A~~~~~~~~~~~~~~-~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 106 ACEILRDWLRYTPAY-AHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp HHHHHHHHHHTSTTT-GGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCH-HHHHHHHHHHHH--------------------HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 110002677736106-788876640000--------------------00010000147888876579999999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH-
Q ss_conf 598-85278899999998625733789999999998798889-774999999961548878899999999983999784-
Q 002549 773 AGY-FPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE- 849 (909)
Q Consensus 773 ~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~- 849 (909)
... .++..++..++..+...|++++|+..++++... .|+ ...+..++.++...|++++|++.++++++ +.|+.
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~ 240 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYI 240 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH--HHHCCH
T ss_conf 7130122211103688888888775500211122222--222211101333012211110137888778998--843249
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCC---------CHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 22999999999349916599999999973-9998---------82439999998840599788997
Q 002549 850 DSFNTLIIMYCRDCRPEEGLSLMHEMRKL-GLEP---------KLDTYKSLISAFGKQQQLEQAEE 905 (909)
Q Consensus 850 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p---------~~~~~~~l~~~~~~~g~~~~A~~ 905 (909)
.++..++.+|.+.|++++|++.++++++. ...+ ....|..+..++...|+.+.+..
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 999999999998789999999999999709757001124599999999999999998298899999
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.1e-17 Score=123.62 Aligned_cols=145 Identities=11% Similarity=0.098 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 0833059999999873999-862899999999999207998899999998865988527889999999862573378999
Q 002549 722 DGRLNELYVVIQELQDMDF-KISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEA 800 (909)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 800 (909)
.+.+.++...+.+...... ..+...+..+...+...|++++|...+++..... +.+...+..++..+...|++++|++
T Consensus 149 ~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 227 (323)
T d1fcha_ 149 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 227 (323)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHCCCCCCCCHHHHH
T ss_conf 657999999999999971301222111036888888887755002111222222-2221110133301221111013788
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHH------------HHHHHHHHHHHCCCHHH
Q ss_conf 99999987988897-749999999615488788999999999839997842------------29999999993499165
Q 002549 801 MVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDED------------SFNTLIIMYCRDCRPEE 867 (909)
Q Consensus 801 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------------~~~~l~~~~~~~g~~~~ 867 (909)
.++++++ ..|+. .++..++.+|...|++++|++.|+++++ +.|+.. .+..+..++...|+.+.
T Consensus 228 ~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~ 303 (323)
T d1fcha_ 228 AYRRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALN--MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 303 (323)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHH--HHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 8778998--8432499999999999987899999999999997--09757001124599999999999999998298899
Q ss_pred HHHH
Q ss_conf 9999
Q 002549 868 GLSL 871 (909)
Q Consensus 868 A~~~ 871 (909)
+...
T Consensus 304 ~~~~ 307 (323)
T d1fcha_ 304 YGAA 307 (323)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=4.7e-14 Score=100.47 Aligned_cols=219 Identities=9% Similarity=0.073 Sum_probs=110.1
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 985049965699999999884999998247999999962018-8678999999998447998758599999999971998
Q 002549 612 AYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLK-LWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCY 690 (909)
Q Consensus 612 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 690 (909)
.+.+.+..++|+..++.+++ ++|++..+|...+.++...+ ++++|+..++++++. .|.+..+|+.++.++...|++
T Consensus 52 ~~~~~e~~~~Al~~~~~ai~--lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~-~p~~~~a~~~~~~~~~~l~~~ 128 (315)
T d2h6fa1 52 VLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-QPKNYQVWHHRRVLVEWLRDP 128 (315)
T ss_dssp HHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCH
T ss_conf 99958866999999999998--798876999999999998376799999999999988-774226898875888850537
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999999979749999822099999999940833059999999873999862899999999999207998899999998
Q 002549 691 ERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGM 770 (909)
Q Consensus 691 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 770 (909)
++|+..++++++.+|+ +...|..++.++...|++++ |...++++
T Consensus 129 ~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~-----------------------------------Al~~~~~a 172 (315)
T d2h6fa1 129 SQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDN-----------------------------------ELQYVDQL 172 (315)
T ss_dssp TTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTT-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHH
T ss_conf 8899887555432100-46889988778888886678-----------------------------------99999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 86598852788999999986257------3378999999999879888-9774999999961548878899999999983
Q 002549 771 KAAGYFPTMYLYRVMSGLFCKGK------RVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEA 843 (909)
Q Consensus 771 ~~~~~~p~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 843 (909)
++.+ +.+...|+.++.++.+.+ .+++|++.+.++++ ..| +...|..++..+... ..+++.+.+++..+
T Consensus 173 l~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~- 247 (315)
T d2h6fa1 173 LKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLD- 247 (315)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHH-
T ss_pred HHHC-CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHH-
T ss_conf 9879-74499998899999874563102354776799999998--4988569999987798862-71889999999997-
Q ss_pred CCCCC---HHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q ss_conf 99978---42299999999934--9916599999999
Q 002549 844 DLQPD---EDSFNTLIIMYCRD--CRPEEGLSLMHEM 875 (909)
Q Consensus 844 ~~~p~---~~~~~~l~~~~~~~--g~~~~A~~~~~~~ 875 (909)
+.|+ ...+..++.+|... +..+.+...+++.
T Consensus 248 -l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka 283 (315)
T d2h6fa1 248 -LQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 283 (315)
T ss_dssp -HTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred -HCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf -287757899999999999999835878799999999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=3e-12 Score=89.00 Aligned_cols=91 Identities=11% Similarity=0.036 Sum_probs=32.8
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHH
Q ss_conf 9999207998899999998865988---5278899999998625733789999999998----7988897-749999999
Q 002549 752 DAFARSGNIFEVKKIYHGMKAAGYF---PTMYLYRVMSGLFCKGKRVRDVEAMVSEMKE----AGFKPDL-SIWNSMLKL 823 (909)
Q Consensus 752 ~~~~~~g~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~-~~~~~l~~~ 823 (909)
..+...|++++|...++........ .....+..++..+...|++++|...++++.. .+..|+. ..+..++.+
T Consensus 221 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 300 (366)
T d1hz4a_ 221 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQL 300 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99986044898999999999762246667778899999999875879999999999998876426674799999999999
Q ss_pred HHCCCCHHHHHHHHHHHHH
Q ss_conf 6154887889999999998
Q 002549 824 YTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 824 ~~~~g~~~~A~~~~~~~~~ 842 (909)
|...|++++|.+.++++++
T Consensus 301 ~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 301 YWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
T ss_conf 9987899999999999999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2e-13 Score=96.49 Aligned_cols=149 Identities=6% Similarity=-0.002 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 19999999980266778999999988589888-8988999999985049-965699999999884999998247999999
Q 002549 570 MYESLIHSCEYNERFAEASQVFSDMRFYNIEP-SEDLYRSMVVAYCKMD-FPETAHFIADQAEKKGIPFEDLSIYVDIID 647 (909)
Q Consensus 570 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 647 (909)
+++.+...+...+.+++|+..++.+++. .| +...|.....++...+ +.++|...++.+++ ..|++..++..++.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~ 120 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_conf 9999999999588669999999999987--9887699999999999837679999999999998--87742268988758
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 96201886789999999984479987585999999999719989999999997974999982209999999994083
Q 002549 648 AYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGR 724 (909)
Q Consensus 648 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 724 (909)
++...|++++|+..++++++. .|.+..+|..++.++...|++++|+..++++++.+|. +...|+.+..++...+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~-dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~ 195 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQ-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 195 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCC
T ss_conf 888505378899887555432-1004688998877888888667899999999987974-49999889999987456
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=1.1e-14 Score=104.45 Aligned_cols=229 Identities=9% Similarity=0.001 Sum_probs=130.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHCCCHHHHH
Q ss_conf 965699999999884999998247999999962018--8678999999998447998758599-9999999719989999
Q 002549 618 FPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLK--LWQKAESLVGCLRQRCAPVDRKVWN-ALIKAYAASGCYERAR 694 (909)
Q Consensus 618 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~ 694 (909)
..++|...++.+++ ..|++...+..++.++...+ ++++|...++++++. .|.+...+. ..+.++...++++.|+
T Consensus 88 ~~~~al~~~~~~l~--~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 88 LVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA-DERNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 89999999999998--6888679898864899884304289999999999855-92121111057899987445528999
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999797499998220999999999408330599999998739998628999999999992079988999999988659
Q 002549 695 AVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAG 774 (909)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 774 (909)
..++++++.+|. +...|..++.++...|++++|...++...+.. |. . ......+...+..+++...+.......
T Consensus 165 ~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~--~-~~~~~~~~~l~~~~~a~~~~~~~l~~~ 238 (334)
T d1dcea1 165 AFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LK--E-LELVQNAFFTDPNDQSAWFYHRWLLGR 238 (334)
T ss_dssp HHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HH--H-HHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--HH--H-HHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 999998871898-79999999999998268898999887767768--99--9-999999988244148899999887718
Q ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH-HHH
Q ss_conf 8852788999999986257337899999999987988897-74999999961548878899999999983999784-229
Q 002549 775 YFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSF 852 (909)
Q Consensus 775 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~ 852 (909)
+++...+..++..+...|+.++|...+.+..+ ..|+. ..+..++.++...|++++|++.++++++ ++|+. ..|
T Consensus 239 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~ 313 (334)
T d1dcea1 239 -AEPLFRCELSVEKSTVLQSELESCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYL 313 (334)
T ss_dssp -CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHH
T ss_conf -66056788799999998669999999998876--2913799999999999878999999999999998--796639999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 002549 853 NTLIIMYC 860 (909)
Q Consensus 853 ~~l~~~~~ 860 (909)
..+...+.
T Consensus 314 ~~L~~~~~ 321 (334)
T d1dcea1 314 DDLRSKFL 321 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999986
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=1.9e-14 Score=102.93 Aligned_cols=264 Identities=9% Similarity=-0.053 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHH----------HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 56999999998849999982479999999----------6201886789999999984479987585999999999719-
Q 002549 620 ETAHFIADQAEKKGIPFEDLSIYVDIIDA----------YGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASG- 688 (909)
Q Consensus 620 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 688 (909)
++|..+++.++. ..|++.++|...... +...+.+++|+..++.+++. .|.+...|..++.++...+
T Consensus 46 ~~al~~~~~~l~--~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~-~pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 46 ESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCC
T ss_conf 999999999999--887858999999999999765003477877899999999999986-88867989886489988430
Q ss_pred -CHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf -9899999999979749999822099-99999994083305999999987399986289999999999920799889999
Q 002549 689 -CYERARAVFNTMMRDGPSPTVDSIN-GLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKI 766 (909)
Q Consensus 689 -~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 766 (909)
++++|...+.++++..|. +...+. .....+...+++++|+..++.+.+.+. .+...+..+..++...|++++|...
T Consensus 123 ~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred CCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 4289999999999855921-2111105789998744552899999999887189-8799999999999982688989998
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99988659885278899999998625733789999999998798889774999999961548878899999999983999
Q 002549 767 YHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQ 846 (909)
Q Consensus 767 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 846 (909)
+...... .|.. ......+...+..+++...+....... +++...+..++..+...++..+|+..+.+..+ .+
T Consensus 201 ~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~ 272 (334)
T d1dcea1 201 GRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEP--EN 272 (334)
T ss_dssp CSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--TC
T ss_pred HHHHHHH--HHHH---HHHHHHHHHHCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HC
T ss_conf 8776776--8999---999999988244148899999887718-66056788799999998669999999998876--29
Q ss_pred CCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCC
Q ss_conf 784-2299999999934991659999999997399988-243999999884059
Q 002549 847 PDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK-LDTYKSLISAFGKQQ 898 (909)
Q Consensus 847 p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 898 (909)
|+. .++..++.+|...|++++|.++++++.+. .|+ ...|..+...+.-..
T Consensus 273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~~e~ 324 (334)
T d1dcea1 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFLLEN 324 (334)
T ss_dssp HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHH
T ss_conf 137999999999998789999999999999987--9663999999999986765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=2.2e-12 Score=89.86 Aligned_cols=156 Identities=12% Similarity=0.198 Sum_probs=77.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHH----CCCCC--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC---HHHHHHH
Q ss_conf 99999920799889999999886----59885--278899999998625733789999999998798889---7749999
Q 002549 750 MLDAFARSGNIFEVKKIYHGMKA----AGYFP--TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPD---LSIWNSM 820 (909)
Q Consensus 750 l~~~~~~~g~~~~a~~~~~~~~~----~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l 820 (909)
....+...++...+...+..... .+..+ ....+...+..+...|+.++|...+++........+ ...+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 88888764667888899999999998731157269999999999998604489899999999976224666777889999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCCC----CHHHH
Q ss_conf 99961548878899999999983----999784-22999999999349916599999999973----9998----82439
Q 002549 821 LKLYTGIEDFKKTIQVYQEIQEA----DLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKL----GLEP----KLDTY 887 (909)
Q Consensus 821 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p----~~~~~ 887 (909)
+.++...|++++|...+++++.. +..|+. ..+..++.+|...|++++|.+.+++..+. |... .....
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~ 337 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 337 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99998758799999999999988764266747999999999999987899999999999999765318299999999999
Q ss_pred HHHHHHHHCCCCHHHHHH
Q ss_conf 999998840599788997
Q 002549 888 KSLISAFGKQQQLEQAEE 905 (909)
Q Consensus 888 ~~l~~~~~~~g~~~~A~~ 905 (909)
..++..+...|+.+++.+
T Consensus 338 ~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 338 AQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHCCCCHHHHH
T ss_conf 999999986599869999
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=2.2e-13 Score=96.28 Aligned_cols=96 Identities=17% Similarity=0.063 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 79999999620188678999999998447998758599999999971998999999999797499998220999999999
Q 002549 641 IYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALI 720 (909)
Q Consensus 641 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 720 (909)
++..++.+|...|++++|+..|+++++. .|.++.+|+.++.++...|++++|+..|+++++..|. +..++..++.++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAI-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf 9999999999879999999999985434-9998899960042788877788752344689998761-1115888999999
Q ss_pred HCCCHHHHHHHHHHHHHC
Q ss_conf 408330599999998739
Q 002549 721 VDGRLNELYVVIQELQDM 738 (909)
Q Consensus 721 ~~g~~~~A~~~~~~~~~~ 738 (909)
..|++++|...+++..+.
T Consensus 117 ~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 876679999999999865
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=5.5e-12 Score=87.34 Aligned_cols=116 Identities=14% Similarity=-0.061 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 89999999850499656999999998849999982479999999620188678999999998447998758599999999
Q 002549 605 LYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAY 684 (909)
Q Consensus 605 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 684 (909)
++..++..+...|+++.|+..+++++. +.|+++.++..++.++...|++++|+..|+++++. .|.+..++..++.++
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~--l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHC--CCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 999999999987999999999998543--49998899960042788877788752344689998-761111588899999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 9719989999999997974999982209999999994083
Q 002549 685 AASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGR 724 (909)
Q Consensus 685 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 724 (909)
...|+++.|...+++.++..|. +......+..++...+.
T Consensus 116 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~ 154 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDE 154 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHH
T ss_conf 9876679999999999865300-07888999999988535
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.54 E-value=1.5e-11 Score=84.54 Aligned_cols=191 Identities=9% Similarity=0.048 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 78999999998447998758599999999971998999999999797499998220999999999408330599999998
Q 002549 656 QKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQEL 735 (909)
Q Consensus 656 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 735 (909)
++|..+++++++...|.+...|...+......|+++.|..+|+++++..+......|...+....+.|+.+.|.++++++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999874998799999999999861338999999999998715786999999999999827868899999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCCC-
Q ss_conf 73999862899999999999207998899999998865988527889999999862573378999999999879-8889-
Q 002549 736 QDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAG-FKPD- 813 (909)
Q Consensus 736 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~- 813 (909)
.+................+...|+.+.|..+|+.+.... +.+...|...+..+.+.|+.+.|..+|+++.+.. ..|+
T Consensus 161 l~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~ 239 (308)
T d2onda1 161 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp HTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 980888679999999999876557789999999999861-0038899999999998698689999999999827898689
Q ss_pred -HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf -774999999961548878899999999983999784
Q 002549 814 -LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE 849 (909)
Q Consensus 814 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 849 (909)
...|...+..-...|+.+.+..+++++.+ ..|+.
T Consensus 240 ~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~--~~~~~ 274 (308)
T d2onda1 240 SGEIWARFLAFESNIGDLASILKVEKRRFT--AFREE 274 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HTTTT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCC
T ss_conf 999999999999984999999999999998--77110
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.49 E-value=1.3e-10 Score=78.57 Aligned_cols=14 Identities=0% Similarity=-0.076 Sum_probs=4.6
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 25733789999999
Q 002549 791 KGKRVRDVEAMVSE 804 (909)
Q Consensus 791 ~~g~~~~A~~~~~~ 804 (909)
..|+.+.+.++.++
T Consensus 253 ~~G~~~~~~~~~~r 266 (308)
T d2onda1 253 NIGDLASILKVEKR 266 (308)
T ss_dssp HHSCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
T ss_conf 84999999999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.25 E-value=1.4e-09 Score=72.17 Aligned_cols=117 Identities=10% Similarity=0.011 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHH----CCCCC-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH
Q ss_conf 0799889999999886----59885-2788999999986257337899999999987988897------74999999961
Q 002549 757 SGNIFEVKKIYHGMKA----AGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL------SIWNSMLKLYT 825 (909)
Q Consensus 757 ~g~~~~a~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~ 825 (909)
.|++++|...+++..+ .+..+ ...++..++..+...|++++|++.++++......... ..+...+.++.
T Consensus 131 ~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (290)
T d1qqea_ 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210 (290)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 87899998899999999873376033346889999999981739999999999998681332455569999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHH--CCCHHHHHHHHHHH
Q ss_conf 548878899999999983999784------229999999993--49916599999999
Q 002549 826 GIEDFKKTIQVYQEIQEADLQPDE------DSFNTLIIMYCR--DCRPEEGLSLMHEM 875 (909)
Q Consensus 826 ~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~--~g~~~~A~~~~~~~ 875 (909)
..|++..|...+++..+ +.|.. .....++.++.. .+.+++|+..|+++
T Consensus 211 ~~~d~~~A~~~~~~~~~--~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 211 AATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHCCHHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 84659999999999997--597744439999999999999836899999999999887
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.13 E-value=5.5e-09 Score=68.34 Aligned_cols=25 Identities=16% Similarity=0.297 Sum_probs=9.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999971998999999999797
Q 002549 678 NALIKAYAASGCYERARAVFNTMMR 702 (909)
Q Consensus 678 ~~l~~~~~~~g~~~~A~~~~~~~~~ 702 (909)
..++.++...|++++|...++++..
T Consensus 162 ~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 162 IKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9999999981739999999999998
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.1e-10 Score=79.18 Aligned_cols=131 Identities=9% Similarity=-0.040 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99989999999988699998999999999999983997499999999997899988988999999999719998999999
Q 002549 200 SNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEIS 279 (909)
Q Consensus 200 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 279 (909)
+.++.+...+....... +++...+..+...+.+.|+.++|...+....... ....+..+...+...+++++|...+
T Consensus 100 ~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999987899-1139999985799875899999999999882788---9999999999999802478999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 999987999898999999999994399999999999998669998988899999999
Q 002549 280 ENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSL 336 (909)
Q Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 336 (909)
.+..+.. |.+...|+.+...+...|+..+|...|.+..... +|-..++..|...+
T Consensus 176 ~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 176 RHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHH
T ss_conf 9999878-9965999999999998699999999999998179-99789999999999
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1e-08 Score=66.65 Aligned_cols=82 Identities=9% Similarity=0.005 Sum_probs=31.6
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHH
Q ss_conf 62018867899999999844799875859999999997199899999999979749999822099999999940833059
Q 002549 649 YGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNEL 728 (909)
Q Consensus 649 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 728 (909)
+...|+++.|++.|.++ .++++.+|..++.++...|++++|.+.|+++++.+|. ....|..++.++.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHC----CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHHH
T ss_conf 99877999999999864----8988999999999999858914678789999998552-346678899999854249999
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q 002549 729 YVVIQEL 735 (909)
Q Consensus 729 ~~~~~~~ 735 (909)
+..+++.
T Consensus 90 ~~~~~kA 96 (192)
T d1hh8a_ 90 IKDLKEA 96 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.00 E-value=5.3e-07 Score=55.71 Aligned_cols=115 Identities=12% Similarity=0.113 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC----CCCH
Q ss_conf 998899999998865988527889999999862----57337899999999987988897749999999615----4887
Q 002549 759 NIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCK----GKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTG----IEDF 830 (909)
Q Consensus 759 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 830 (909)
....+...+...... .+...+..++..+.. ......+...++...+. .+......++..|.. ..++
T Consensus 125 ~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~---g~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 125 DFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTCSSCCCH
T ss_pred HHHHHHHHHHHHHCC---CCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCC---CCCCCCCCHHHHCCCCCCCCCCH
T ss_conf 157788875552001---110104455556406887433422000122113232---22233221131212676543103
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8899999999983999784229999999993----499165999999999739998
Q 002549 831 KKTIQVYQEIQEADLQPDEDSFNTLIIMYCR----DCRPEEGLSLMHEMRKLGLEP 882 (909)
Q Consensus 831 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p 882 (909)
++|+..|+++.+.| ++..+..|+.+|.. ..++++|.+++++..+.|..+
T Consensus 199 ~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 199 KEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHCCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 44454676653036---899999999999839997618999999999999876999
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=6.6e-10 Score=74.15 Aligned_cols=60 Identities=10% Similarity=-0.026 Sum_probs=22.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999994399999999999998669998988899999999803999999999999877
Q 002549 294 YNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLD 354 (909)
Q Consensus 294 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 354 (909)
+..+...+...|++++|...|.+..... +.+...|+.+...+...|+..+|...|.+...
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999998024789999999999878-99659999999999986999999999999981
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=9.1e-08 Score=60.57 Aligned_cols=62 Identities=18% Similarity=0.038 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 799999996201886789999999984479987585999999999719989999999997974
Q 002549 641 IYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRD 703 (909)
Q Consensus 641 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 703 (909)
++..++.++...|++++|++.|+++++. .|.+...|..++.++...|++++|...|++++..
T Consensus 38 ~~~nlG~~~~~~g~~~~A~~~~~kAl~l-dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~ 99 (192)
T d1hh8a_ 38 ICFNIGCMYTILKNMTEAEKAFTRSINR-DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9999999999858914678789999998-5523466788999998542499999999999986
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.91 E-value=1.6e-09 Score=71.73 Aligned_cols=101 Identities=12% Similarity=-0.097 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 88988999999985049965699999999884999998247999999962018867899999999844799875859999
Q 002549 601 PSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNAL 680 (909)
Q Consensus 601 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 680 (909)
|+...+...+..+...|+++.|+..|..++. +.|++...+..++.+|...|++++|+..|+++++. .|.+...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHH
T ss_conf 6499999999999986999999999999998--59998999981789874100000124788888871-88738999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 999997199899999999979749
Q 002549 681 IKAYAASGCYERARAVFNTMMRDG 704 (909)
Q Consensus 681 ~~~~~~~g~~~~A~~~~~~~~~~~ 704 (909)
+.+|...|++++|...|+++++..
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~ 102 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLA 102 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 999998799999999999998749
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.85 E-value=2.6e-08 Score=64.00 Aligned_cols=95 Identities=14% Similarity=-0.014 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 47999999962018867899999999844799875859999999997199899999999979749999822099999999
Q 002549 640 SIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQAL 719 (909)
Q Consensus 640 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 719 (909)
..+...++.+...|++++|+..|+++++. .|.++.+|+.++.+|...|+++.|+..|+++++..|. +..+|..++.+|
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~-~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg~~~ 82 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ 82 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
T ss_conf 99999999999869999999999999985-9998999981789874100000124788888871887-389999999999
Q ss_pred HHCCCHHHHHHHHHHHH
Q ss_conf 94083305999999987
Q 002549 720 IVDGRLNELYVVIQELQ 736 (909)
Q Consensus 720 ~~~g~~~~A~~~~~~~~ 736 (909)
...|++++|+..++++.
T Consensus 83 ~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 83 LEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
T ss_conf 98799999999999998
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=2.2e-07 Score=58.21 Aligned_cols=90 Identities=11% Similarity=0.103 Sum_probs=34.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCH
Q ss_conf 99962018867899999999844799875859999999997199899999999979749999822099999999940833
Q 002549 646 IDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRL 725 (909)
Q Consensus 646 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 725 (909)
++.+.+.|++++|+..|+++++. .|.+...|..++.++...|+++.|...|+++++.+|. +..+|..++.++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
T ss_conf 99999958999999986602110-0011333245678887405421288889999987544-668779999999994999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 059999999873
Q 002549 726 NELYVVIQELQD 737 (909)
Q Consensus 726 ~~A~~~~~~~~~ 737 (909)
++|...+++...
T Consensus 95 ~eA~~~~~~a~~ 106 (159)
T d1a17a_ 95 RAALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999998999987
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.79 E-value=2.8e-06 Score=51.09 Aligned_cols=47 Identities=11% Similarity=0.003 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHC
Q ss_conf 337899999999987988897749999999615----48878899999999983
Q 002549 794 RVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTG----IEDFKKTIQVYQEIQEA 843 (909)
Q Consensus 794 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 843 (909)
+.++|+.+|+++.+.| +...+..++..|.. ..+.++|.+.|+++.+.
T Consensus 197 d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 197 NFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 0344454676653036---89999999999983999761899999999999987
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=2.2e-07 Score=58.16 Aligned_cols=70 Identities=16% Similarity=0.024 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 99982479999999620188678999999998447998758599999999971998999999999797499
Q 002549 635 PFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGP 705 (909)
Q Consensus 635 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 705 (909)
.|++...+..++.++...|++++|...|+++++. .|.+..+|..++.++...|++++|...++++++..|
T Consensus 40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 40 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP 109 (159)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 0011333245678887405421288889999987-544668779999999994999999998999987299
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=1.5e-07 Score=59.14 Aligned_cols=100 Identities=17% Similarity=0.122 Sum_probs=61.7
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHC
Q ss_conf 9999862573378999999999879888-977499999996154887889999999998399978-42299999999934
Q 002549 785 MSGLFCKGKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-EDSFNTLIIMYCRD 862 (909)
Q Consensus 785 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 862 (909)
.+..+.+.|++++|+..|+++++. .| +...|..++.++...|++++|+..++++++ +.|+ +..|..++.++...
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHH--HCCCHHHHHHHHHHHHHHC
T ss_conf 999999969999999999998861--996013430001101100001121001346777--4022026778899999981
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q ss_conf 991659999999997399988-2439999
Q 002549 863 CRPEEGLSLMHEMRKLGLEPK-LDTYKSL 890 (909)
Q Consensus 863 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 890 (909)
|++++|+..+++..+ ..|+ +..+..+
T Consensus 85 ~~~~~A~~~~~~a~~--~~p~~~~~~~~l 111 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLK--HEANNPQLKEGL 111 (117)
T ss_dssp TCHHHHHHHHHHHHT--TCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--HCCCCHHHHHHH
T ss_conf 279999999999998--498989999999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=3.4e-07 Score=56.92 Aligned_cols=86 Identities=16% Similarity=0.026 Sum_probs=28.9
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHH
Q ss_conf 62018867899999999844799875859999999997199899999999979749999822099999999940833059
Q 002549 649 YGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNEL 728 (909)
Q Consensus 649 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 728 (909)
+...|++++|+..|+++++. .|.+...|..++.++...|++++|+..+.++++.+|. +...|..++.++...|++++|
T Consensus 13 ~~~~g~~~eAi~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHC-CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCHHHH
T ss_conf 99969999999999998861-9960134300011011000011210013467774022-026778899999981279999
Q ss_pred HHHHHHHH
Q ss_conf 99999987
Q 002549 729 YVVIQELQ 736 (909)
Q Consensus 729 ~~~~~~~~ 736 (909)
+..+++..
T Consensus 91 ~~~~~~a~ 98 (117)
T d1elwa_ 91 KRTYEEGL 98 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=5.2e-07 Score=55.77 Aligned_cols=79 Identities=11% Similarity=0.039 Sum_probs=41.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q ss_conf 89999999862573378999999999879888-9774999999961548878899999999983999784-229999999
Q 002549 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIM 858 (909)
Q Consensus 781 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 858 (909)
+++.++.+|.+.|++++|+..++++++ ..| +...+..++.+|...|++++|+..|+++++ +.|++ .....+..+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
T ss_conf 999999998864211011000000010--0223103467779999872229999999999997--298989999999999
Q ss_pred HHHCC
Q ss_conf 99349
Q 002549 859 YCRDC 863 (909)
Q Consensus 859 ~~~~g 863 (909)
..+.+
T Consensus 140 ~~~~~ 144 (170)
T d1p5qa1 140 QQRIR 144 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=2.7e-06 Score=51.24 Aligned_cols=60 Identities=18% Similarity=0.076 Sum_probs=23.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999620188678999999998447998758599999999971998999999999797499
Q 002549 645 IIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGP 705 (909)
Q Consensus 645 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 705 (909)
++.+|.+.|++++|+..++.+++. .|.++.++..++.++...|++++|...|+++++.+|
T Consensus 68 la~~y~k~~~~~~A~~~~~~al~~-~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 68 LAMCHLKLQAFSAAIESCNKALEL-DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999988642110110000000100-223103467779999872229999999999997298
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.45 E-value=5.7e-07 Score=55.54 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=55.0
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHC
Q ss_conf 99998625733789999999998798889-77499999996154887889999999998399978-42299999999934
Q 002549 785 MSGLFCKGKRVRDVEAMVSEMKEAGFKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-EDSFNTLIIMYCRD 862 (909)
Q Consensus 785 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 862 (909)
++..+.+.|++++|+..++++++ ..|+ ...|..++.++...|++++|+..++++++ +.|+ ..++..++.+|...
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCHHHHHHHHHHC
T ss_conf 99999987605899998861011--2111100123354564101258774100000111--1110000037899999997
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 99165999999999
Q 002549 863 CRPEEGLSLMHEMR 876 (909)
Q Consensus 863 g~~~~A~~~~~~~~ 876 (909)
|++++|.+.+++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 89999999999981
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=6.8e-07 Score=55.05 Aligned_cols=89 Identities=16% Similarity=0.079 Sum_probs=41.0
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHCCCCCCH---HHHHHHHH
Q ss_conf 9999862573378999999999879888-977499999996154---8878899999999983999784---22999999
Q 002549 785 MSGLFCKGKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGI---EDFKKTIQVYQEIQEADLQPDE---DSFNTLII 857 (909)
Q Consensus 785 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~ 857 (909)
++..+...+++++|++.|++++.. .| +..++..++.++.+. +++++|+++++++++ ..|++ .++..++.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~--~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP--KGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT--TSCHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHH
T ss_conf 988736999999999999998832--999899999999999985126789999999999986--0699319999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHH
Q ss_conf 99934991659999999997
Q 002549 858 MYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 858 ~~~~~g~~~~A~~~~~~~~~ 877 (909)
+|.+.|++++|.++++++.+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99997316999999999997
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.42 E-value=2e-06 Score=52.11 Aligned_cols=88 Identities=14% Similarity=0.056 Sum_probs=35.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 99996201886789999999984479987585999999999719989999999997974999982209999999994083
Q 002549 645 IIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGR 724 (909)
Q Consensus 645 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 724 (909)
++..+.+.|++++|+..+++++.. .|.+..+|..++.++...|++++|...++++++..|. +...+..++.+|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK-EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCHHHHHHHHHHCCC
T ss_conf 999999876058999988610112-1111001233545641012587741000001111110-00003789999999789
Q ss_pred HHHHHHHHHH
Q ss_conf 3059999999
Q 002549 725 LNELYVVIQE 734 (909)
Q Consensus 725 ~~~A~~~~~~ 734 (909)
+++|++.+++
T Consensus 100 ~~~A~~~l~~ 109 (112)
T d1hxia_ 100 ANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.41 E-value=2.6e-06 Score=51.35 Aligned_cols=60 Identities=8% Similarity=0.078 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 4999999961548878899999999983999784-2299999999934991659999999997
Q 002549 816 IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
.+..++.++.+.|++++|+..++++++ +.|+. .++..++.+|...|++++|+..++++.+
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999899999864021013666554431--0002236777699999980479999999999998
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.39 E-value=3.5e-06 Score=50.54 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=27.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 499999996154887889999999998399978-42299999999934991659999999997
Q 002549 816 IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-EDSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
++..++.+|.+.|++++|++.++++++ +.|+ ..++..++.+|...|++++|+..+++..+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~--~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 996199999984653011101000100--0000012467768999996899999999999998
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.39 E-value=1.5e-05 Score=46.43 Aligned_cols=92 Identities=7% Similarity=0.040 Sum_probs=45.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q ss_conf 89999999862573378999999999879888-9774999999961548878899999999983999784-229999999
Q 002549 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIM 858 (909)
Q Consensus 781 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 858 (909)
++..++.+|.+.|++++|+..++++++ ..| +...+..++.++...|++++|+..|+++++ +.|++ .....+..+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~--l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
T ss_conf 998499998776220110002232220--1310488999889999882789999999999998--598989999999999
Q ss_pred HHHCCCH-HHHHHHHHHHH
Q ss_conf 9934991-65999999999
Q 002549 859 YCRDCRP-EEGLSLMHEMR 876 (909)
Q Consensus 859 ~~~~g~~-~~A~~~~~~~~ 876 (909)
....+.. +...+.+..|.
T Consensus 142 ~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 142 QKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999869999999999998
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=1.4e-06 Score=53.10 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=23.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99996201886789999999984479987585999999999719989999999997974
Q 002549 645 IIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRD 703 (909)
Q Consensus 645 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 703 (909)
+++.+...|++++|+..|+++++. .|.+..++..++.+|...|+++.|+..++++++.
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 67 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999859999999999999884-9645899986889998818607789999999986
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=2.3e-06 Score=51.71 Aligned_cols=97 Identities=12% Similarity=0.198 Sum_probs=54.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q ss_conf 999999207998899999998865988527889999999862573---37899999999987988897-74999999961
Q 002549 750 MLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKR---VRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYT 825 (909)
Q Consensus 750 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 825 (909)
+++.+...+++++|.+.|++.+..+ +.++.++..++.++.+.++ +++|+.++++++.....|+. .++..++.+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 9887369999999999999988329-998999999999999851267899999999999860699319999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 548878899999999983999784
Q 002549 826 GIEDFKKTIQVYQEIQEADLQPDE 849 (909)
Q Consensus 826 ~~g~~~~A~~~~~~~~~~~~~p~~ 849 (909)
..|++++|++.|+++++ +.|+.
T Consensus 84 ~~g~~~~A~~~~~~aL~--~~P~~ 105 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQ--TEPQN 105 (122)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHHHHH--HCCCC
T ss_conf 97316999999999997--69098
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=5.8e-06 Score=49.11 Aligned_cols=91 Identities=11% Similarity=0.206 Sum_probs=51.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH--------HHHH
Q ss_conf 999999862573378999999999879888-9774999999961548878899999999983999784--------2299
Q 002549 783 RVMSGLFCKGKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE--------DSFN 853 (909)
Q Consensus 783 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--------~~~~ 853 (909)
..++..+.+.|++++|+..|+++++. .| +...+..++.+|...|++++|++.++++++ +.|+. .++.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH
T ss_conf 99999999859999999999999884--964589998688999881860778999999998--68012788988999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999934991659999999997
Q 002549 854 TLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 854 ~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
.++.++...+++++|++++++...
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999999993889999999999984
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.33 E-value=4e-06 Score=50.15 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=22.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 999962018867899999999844799875859999999997199899999999979749
Q 002549 645 IIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDG 704 (909)
Q Consensus 645 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 704 (909)
++.+|...+++++|+..++.+++. .|.+...+..++.++...|++++|...|.++++.+
T Consensus 70 la~~~~~l~~~~~Ai~~~~~al~l-~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 70 LAMCYLKLREYTKAVECCDKALGL-DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 999987762201100022322201-31048899988999988278999999999999859
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.28 E-value=9.7e-06 Score=47.70 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q ss_conf 78899999998625733789999999998798889-774999999961548878899999999983999784-2299999
Q 002549 779 MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLI 856 (909)
Q Consensus 779 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~ 856 (909)
...+..++.++.+.|++++|+..++++++ +.|+ ...|..++.++...|++++|++.|+++++ +.|+. .....+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~~~l~ 152 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_conf 99999899999864021013666554431--0002236777699999980479999999999998--5989999999999
Q ss_pred HHHHHCC
Q ss_conf 9999349
Q 002549 857 IMYCRDC 863 (909)
Q Consensus 857 ~~~~~~g 863 (909)
.+..+..
T Consensus 153 ~~~~~l~ 159 (169)
T d1ihga1 153 KVKQKIK 159 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.28 E-value=2.3e-05 Score=45.32 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=7.0
Q ss_pred HHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9999719989999999997974
Q 002549 682 KAYAASGCYERARAVFNTMMRD 703 (909)
Q Consensus 682 ~~~~~~g~~~~A~~~~~~~~~~ 703 (909)
.++...|++++|+..++++++.
T Consensus 75 ~~~~~~g~~~~Al~~~~~al~~ 96 (179)
T d2ff4a2 75 EAEIACGRASAVIAELEALTFE 96 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9998879905789999999984
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.25 E-value=4.1e-05 Score=43.72 Aligned_cols=65 Identities=8% Similarity=0.034 Sum_probs=36.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 89999999862573378999999999879888-9774999999961548878899999999983999784
Q 002549 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE 849 (909)
Q Consensus 781 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 849 (909)
++..++.+|.+.|++++|+..++++++ ..| +..+|..++.++...|++++|+..|+++++ +.|++
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~--~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n 134 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNN 134 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCC
T ss_conf 996199999984653011101000100--0000012467768999996899999999999998--29898
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.23 E-value=4e-06 Score=50.17 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 8867899999999844799875859999999997199899999999979749
Q 002549 653 KLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDG 704 (909)
Q Consensus 653 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 704 (909)
|++++|+..+++.++. .|.+...+..++..++..|++++|...++...+..
T Consensus 10 G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~ 60 (264)
T d1zbpa1 10 GQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60 (264)
T ss_dssp TCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 8999999999999997-89999999999999998799999999999999869
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.08 E-value=2.6e-06 Score=51.32 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q ss_conf 889999999998
Q 002549 831 KKTIQVYQEIQE 842 (909)
Q Consensus 831 ~~A~~~~~~~~~ 842 (909)
++|.+.|+++++
T Consensus 103 ~~A~~~~~kal~ 114 (145)
T d1zu2a1 103 DLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCC
T ss_conf 876312110002
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.99 E-value=8.3e-06 Score=48.14 Aligned_cols=50 Identities=20% Similarity=0.154 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 1889999999998620587666443199999999802667789999999885
Q 002549 545 AQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRF 596 (909)
Q Consensus 545 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 596 (909)
.|++++|+..+++.++.. |.+...+..++..++..|++++|...++...+
T Consensus 9 ~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 889999999999999978--99999999999999987999999999999998
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.99 E-value=1.3e-05 Score=46.96 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 999999999797499998220999999999
Q 002549 691 ERARAVFNTMMRDGPSPTVDSINGLLQALI 720 (909)
Q Consensus 691 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 720 (909)
++|+..|+++++.+|. +..+|..++.+|.
T Consensus 58 ~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 58 QEAITKFEEALLIDPK-KDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCH-HHHHHHHHHHHHH
T ss_conf 8899999998873012-0587766899998
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.96 E-value=0.00028 Score=38.40 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=5.6
Q ss_pred HHHHHHHHCCCHHHHHHH
Q ss_conf 999999934991659999
Q 002549 854 TLIIMYCRDCRPEEGLSL 871 (909)
Q Consensus 854 ~l~~~~~~~g~~~~A~~~ 871 (909)
.++.+|...|++++|++.
T Consensus 106 ~l~~al~~~Gr~~eAl~~ 123 (179)
T d2ff4a2 106 QLITAYYLSDRQSDALGA 123 (179)
T ss_dssp HHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHH
T ss_conf 999999985579999999
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.94 E-value=3e-05 Score=44.57 Aligned_cols=22 Identities=9% Similarity=0.048 Sum_probs=7.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999999349916599999999
Q 002549 854 TLIIMYCRDCRPEEGLSLMHEM 875 (909)
Q Consensus 854 ~l~~~~~~~g~~~~A~~~~~~~ 875 (909)
.++.+|...|++++|++.|+++
T Consensus 105 ~~g~~~~~lg~~eeA~~~~~~A 126 (156)
T d2hr2a1 105 SRALALDGLGRGAEAMPEFKKV 126 (156)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2699999888888889999999
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.85 E-value=0.00044 Score=37.19 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 59999999997199
Q 002549 676 VWNALIKAYAASGC 689 (909)
Q Consensus 676 ~~~~l~~~~~~~g~ 689 (909)
+.+++...|...++
T Consensus 282 vn~al~~lyie~~d 295 (336)
T d1b89a_ 282 VNESLNNLFITEED 295 (336)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCH
T ss_conf 99999999867124
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.78 E-value=0.00012 Score=40.79 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=10.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9999996154887889999999998
Q 002549 818 NSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 818 ~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
..++.+|...|++++|++.|+++++
T Consensus 104 ~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 104 YSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5269999988888888999999998
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.37 E-value=0.0021 Score=32.87 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=5.3
Q ss_pred HHHHHCCCHHHHHHHHH
Q ss_conf 99980699989999999
Q 002549 194 SACSRESNLEEAMKVYG 210 (909)
Q Consensus 194 ~~~~~~g~~~~A~~~~~ 210 (909)
..|...|.++....+++
T Consensus 107 ~~ye~~~~~e~Li~~Le 123 (336)
T d1b89a_ 107 NYYQDRGYFEELITMLE 123 (336)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHH
T ss_conf 99987698599999999
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.00043 Score=37.25 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=13.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 499999996154887889999999998399978
Q 002549 816 IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD 848 (909)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 848 (909)
++..++.++.+.|++++|+..++++++ ++|+
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~ 78 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLE--LDPE 78 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCC
T ss_conf 999872688865773988878877988--6929
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.0013 Score=34.23 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 29999999993499165999999999
Q 002549 851 SFNTLIIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 851 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 876 (909)
++.+++.++.+.|++++|++.++++.
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL 73 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLL 73 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99987268886577398887887798
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.46 E-value=0.035 Score=25.15 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHC
Q ss_conf 878899999999983999784229999999993----49916599999999973
Q 002549 829 DFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCR----DCRPEEGLSLMHEMRKL 878 (909)
Q Consensus 829 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 878 (909)
+.++|++.|++..+. -++.+...|+..|.. ..+.++|.+++++..+.
T Consensus 74 d~~~A~~~~~~aa~~---g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 74 DLRKAAQYYSKACGL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCC---CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 357888887500025---740677899999982984677899999999999987
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.64 E-value=0.059 Score=23.68 Aligned_cols=23 Identities=4% Similarity=0.037 Sum_probs=8.0
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99996154887889999999998
Q 002549 820 MLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
++.+|.+.|++++|..+++++++
T Consensus 79 Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 79 LTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999987329999999999982
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.14 E-value=0.076 Score=23.00 Aligned_cols=61 Identities=7% Similarity=-0.033 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHCC---CCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 77499999996154---887889999999998399978-4-229999999993499165999999999
Q 002549 814 LSIWNSMLKLYTGI---EDFKKTIQVYQEIQEADLQPD-E-DSFNTLIIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 814 ~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 876 (909)
..+-..+++++.+. .+.++|+.+++++.+ ..|. . .++..++-+|.+.|++++|.++++.+.
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~--~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L 100 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 100 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10199999999827968899999999999985--4950599999999999998732999999999998
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.42 E-value=0.14 Score=21.29 Aligned_cols=53 Identities=11% Similarity=0.100 Sum_probs=18.1
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 862573378999999999879888977499999996154887889999999998
Q 002549 789 FCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 789 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
+.++|+-++-.++.....+. -+|+......++.+|.+.|...++-+++.++.+
T Consensus 96 lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 96 LVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp HHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99826087899999998753-799879999999999885224448999999999
|