Citrus Sinensis ID: 002576

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900------
MQVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLPSAVRKVAGGRR
ccEEccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHccccccEEEEEEccccEEEEEEccccEEEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHccccEEEEEEEEEcccccEEEEEEcccccccccHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEEEccEEEEEccccccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHHHccccccccccccHHHHHHHcccEEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccEEEcccccHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEEEcccccEEEEEEccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccEEEEEEEEEccccccccccEEEEEEEEccccEEEccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHccccccEEEEEEEEcccccEEEccccccEEEEEEEcccccccHHHHHHHcccccEEcccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
ccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccEccccccHccccccccHHHHHHHHccccccEEEEEEEcccEEEEEEcccccEEEEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEccccccHHHHHHHHHHccccEEEcccHHHcccHHHHHHHHHHHHHHHHHcccccccccccccHHHcccccEEEEEEEEEcccEEEEEccccccccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEEccccccccEEEcccccccccHHHHHHHHcHcHcccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHccccccccHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHcccccccccccccEEEEccccccHHHHHHHHHHHHccccccEEEEEEccccEEEEEEccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEEcccHHHHHHHHHcccEEEccHHHHccccHHHHHHHHHHHHHHHHcHHHcccccHHHcccHHHHHcccccEEEEEEEEccccEEEEEEccccHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccEEEEEEEEccccccccccccEEEEEEEcccccEccHHHccccccHHcccccHHHHEEEEEEEcccccHHHHHHHHHHHHHHHccccHHHHHHHHHccccccEEcccccccEEEEEcccccccccHHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccccccccccccccccc
mqvkeqgsqkgeasPFLAELLRLEEQAKLQGlgrwskvpgaaeasirnlppsaigdssnfNAMALLdankgrpmqgiveqardgstlrvyllpefQFVQVFVAGIqapavarrpaaivdtdteetngdvsaaeavAPLNSAQRLAASTasagqqstdepfalDAKYFTEMRVLNREVRIVLEGVDKFKNLIgsvfypdgetAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRmwtnyvppqsnskaihdqnftgKVVEVVSGdciivaddsipygNALAERRVNlssircpkignprkdekpAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVeaapvaagakgpagtkgpagtkgqaaakgpageesvgatetriIDFGSifllspikgegddasavaqsnaagqpagVNVAELVVSRglgnvinhrdfeerSNYYDALLAAEARAKAgkkgcysskeppvmhiqdltmapvkkardflpflqrsrriPAVVEYVLSGhrfkvlipketcsiafsfsgvrcpgrnerySNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQtsfgsdripdshLLEQAEKSAKSQKLKIWENYvegeevsngaavegkQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLnlqeapvigafnpkkGEIVLAQFSadnswnramivnaprekvesvnDKFEVFYIDygnqelvpynklrpidpslsstpplaqlcslayikipaledeygpEAAEFLnehtynssNEFRALVEErdssggklkgqgtgTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGmwqygdiqsddedplpsaVRKVAGGRR
mqvkeqgsqkgeaspFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAAStasagqqstdepFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVppqsnskaihdqNFTGKVVEVVSGDCIIVADDSIPYGNALAErrvnlssircpkignprkdekpaaYAREAREFLrtrligrqvnvqmeySRKVVVEAApvaagakgpagtkgpagtKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLpflqrsrriPAVVEYVLSGHRFKVLIPKETCSIAfsfsgvrcpgrnERYSNEALLLMRQKILQRDVEIEVETVDRTGtflgslwesrTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEevsngaavegkqkeVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVnaprekvesvnDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTlmvqeglarverrkrwgsrdRQAALENLEKFQEEAKTARIGMWQygdiqsddedplpsavrkvaggrr
MQVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGiqapavarrpaaivDTDTEETNGDVSAAEAVAPLNSAQRLaastasagqqstDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEaapvaagakgpagtkgpagtkgqaaakgpagEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDallaaearakagkkgCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSggklkgqgtgtllHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLPSAVRKVAGGRR
**********************************W*****************************************IVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIV*****************************************FALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANM*****************KTRLRMWTNYVP******AIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCP****************EAREFLRTRLIGRQVNVQMEYSRKVVVEAA************************************ETRIIDFGSIFLLSPIK******************AGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAK****GCY******VMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSF**********************LKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDP****TPPLAQLCSLAYIKIPALEDEYGPEAAEFLNE**************************GTGTLLHVTLVAVDAEISINTLMVQEGLARVER*************************ARIGMWQYG**********************
MQVK***************LLRLE*********RW**VPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAV**************************PLNSAQRLA************EPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKR*LKAADLQAKKTRLRMWTNY****************GKVVEVVSGDCIIVADDSIPYGNALAERRVNLS******************YAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAP*A***KGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFL*********************QPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAA*****************PVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKL****************************IWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARV********************************WQYGDIQSDDE***************
************ASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSA***************DEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNP********YAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVA*******************************ATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEA**********SSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQ*********LKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLPSAVRKVAGGRR
*************SPFLAELLRLEEQAKLQG**R*********ASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAV**********************************************DEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSK*IHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAV*GKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQ*******************
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MQVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLPSAVRKVAGGRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query906 2.2.26 [Sep-21-2011]
Q78PY7910 Staphylococcal nuclease d yes no 0.805 0.802 0.337 1e-114
Q66X93909 Staphylococcal nuclease d yes no 0.805 0.803 0.337 1e-113
Q7KZF4910 Staphylococcal nuclease d yes no 0.806 0.803 0.334 1e-112
Q5REU4910 Staphylococcal nuclease d yes no 0.806 0.803 0.334 1e-112
Q863B3910 Staphylococcal nuclease d yes no 0.806 0.803 0.334 1e-112
Q7ZT42897 Staphylococcal nuclease d yes no 0.803 0.811 0.325 1e-105
Q9Y7U7878 Staphylococcal nuclease d yes no 0.480 0.495 0.313 1e-49
Q9BXT4 1180 Tudor domain-containing p no no 0.157 0.121 0.329 2e-13
Q99MV1 1172 Tudor domain-containing p no no 0.142 0.110 0.301 4e-12
Q58EK5 1175 Tudor domain-containing p no no 0.192 0.148 0.313 1e-09
>sp|Q78PY7|SND1_MOUSE Staphylococcal nuclease domain-containing protein 1 OS=Mus musculus GN=Snd1 PE=1 SV=1 Back     alignment and function desciption
 Score =  412 bits (1059), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 303/899 (33%), Positives = 458/899 (50%), Gaps = 169/899 (18%)

Query: 20  LLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVE 79
           L   EEQAK    G WS+  G    +IR+L    I +  +F     +D++  +P+  I+E
Sbjct: 149 LSECEEQAKASKKGMWSE--GNGSHTIRDLK-YTIENPRHF-----VDSHHQKPVNAIIE 200

Query: 80  QARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLN 139
             RDGS +R  LLP    V V ++GI+ P   R           ET+G            
Sbjct: 201 HVRDGSVVRALLLPGHHLVTVMLSGIKCPTFRR-----------ETDGS----------- 238

Query: 140 SAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDG 199
                           T EPFA +AK+FTE R+L R+V+I+LE     +NL+G++ +P+G
Sbjct: 239 ---------------ETPEPFAAEAKFFTESRLLQRDVQIILESCHN-QNLLGTILHPNG 282

Query: 200 ETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSK 259
               ++   L++ G A+ ++WS  +    A++ L+AA+  AK+ RLR+W +YVPP +N  
Sbjct: 283 ----NITELLLKEGFARCVDWSIAVYTRGAEK-LRAAERFAKERRLRIWRDYVPPTANLD 337

Query: 260 AIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPK-----IGNPRKDE 314
              D+ F  KV++V++ D I+V  +S  Y      + ++LSSIR P+     I +  K  
Sbjct: 338 Q-KDKQFVAKVMQVLNADAIVVKLNSGDY------KTIHLSSIRPPRLEGDNIQDKNKKL 390

Query: 315 KP---AAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKG 371
           +P     Y  EAREFLR +LIG++VNV ++Y R     A+P                   
Sbjct: 391 RPLYDIPYMFEAREFLRKKLIGKKVNVTVDYIRP----ASP------------------- 427

Query: 372 QAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELV 431
            A    PA  E   AT T                                  G+N+AE +
Sbjct: 428 -ATETVPAFSERTCATVT--------------------------------IGGINIAEAL 454

Query: 432 VSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKK 490
           VS+GL  VI +R D ++RS++YD LLAAEARA    KG +S KE P+  + D++    +K
Sbjct: 455 VSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADIS-GDTQK 513

Query: 491 ARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCP--GRN------- 541
           A+ FLPFLQR+ R  AVVEYV SG R K+ +PKETC I F  +G+ CP   RN       
Sbjct: 514 AKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQE 573

Query: 542 -ERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTS 600
            E +S EA L  ++ +LQR+VE+EVE++D+ G F+G L     N++V+L+E  L+K+   
Sbjct: 574 GEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHMDGANLSVLLVEQALSKVH-- 631

Query: 601 FGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEG--EEVSNGAAVEGKQKEVLKVVVTEIL 658
           F ++R      L  AE++AK +K K+W +Y E   EEV      + +      V VTEI 
Sbjct: 632 FTAERSAYYKPLLSAEEAAKQRKEKVWAHYEERPVEEVMPVLEEKERSASYKPVFVTEIT 691

Query: 659 GGGKFYVQQV--GDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAM 716
               FYVQ V  G Q +  + + + +      PV G++ P++GE  +A+F  D  W RA 
Sbjct: 692 DDLHFYVQDVETGTQ-LEKLMENMRNDISSHPPVEGSYAPRRGEFCIAKF-VDGEWYRAR 749

Query: 717 IVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQLCSLAYIKI 774
           +     EKVES   K  VFYIDYGN+E++P  +L  + P+ S+   P  A   + A+I++
Sbjct: 750 V-----EKVES-PAKVHVFYIDYGNREILPSTRLGTLPPAFSTRVLPAQATEYAFAFIQV 803

Query: 775 PALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQG-TGTLLHVTLVAVDAE 833
           P  ED                 ++   ++V +  ++   L  +  + +  HVTL   D++
Sbjct: 804 PQDEDA---------------RTDAVDSVVRDIQNTQCLLNVEHLSASCPHVTLQFADSK 848

Query: 834 ISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDED 892
             +   +V+EGL  VE RK    +  Q  +      QE AK+AR+ +W+YGD ++DD D
Sbjct: 849 GDVGLGLVKEGLVMVEVRK---EKQFQKVITEYLNAQESAKSARLNLWRYGDFRADDAD 904
Functions as a bridging factor between STAT6 and the basal transcription factor. Plays a role in PIM1 regulation of MYB activity. Plays a role in cell viability (By similarity). Functions as a transcriptional coactivator for STAT5.
Mus musculus (taxid: 10090)
>sp|Q66X93|SND1_RAT Staphylococcal nuclease domain-containing protein 1 OS=Rattus norvegicus GN=Snd1 PE=2 SV=1 Back     alignment and function description
>sp|Q7KZF4|SND1_HUMAN Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1 Back     alignment and function description
>sp|Q5REU4|SND1_PONAB Staphylococcal nuclease domain-containing protein 1 OS=Pongo abelii GN=SND1 PE=2 SV=1 Back     alignment and function description
>sp|Q863B3|SND1_BOVIN Staphylococcal nuclease domain-containing protein 1 OS=Bos taurus GN=SND1 PE=1 SV=1 Back     alignment and function description
>sp|Q7ZT42|SND1_DANRE Staphylococcal nuclease domain-containing protein 1 OS=Danio rerio GN=snd1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y7U7|SND1_SCHPO Staphylococcal nuclease domain-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snd1 PE=1 SV=1 Back     alignment and function description
>sp|Q9BXT4|TDRD1_HUMAN Tudor domain-containing protein 1 OS=Homo sapiens GN=TDRD1 PE=2 SV=2 Back     alignment and function description
>sp|Q99MV1|TDRD1_MOUSE Tudor domain-containing protein 1 OS=Mus musculus GN=Tdrd1 PE=1 SV=2 Back     alignment and function description
>sp|Q58EK5|TDRD1_DANRE Tudor domain-containing protein 1 OS=Danio rerio GN=tdrd1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query906
356516458990 PREDICTED: staphylococcal nuclease domai 0.962 0.880 0.734 0.0
356508886990 PREDICTED: staphylococcal nuclease domai 0.962 0.880 0.734 0.0
2254477231000 PREDICTED: staphylococcal nuclease domai 0.961 0.871 0.733 0.0
449440482988 PREDICTED: staphylococcal nuclease domai 0.956 0.877 0.725 0.0
255539999988 ebna2 binding protein P100, putative [Ri 0.959 0.879 0.739 0.0
307135996988 short-chain dehydrogenase/reductase [Cuc 0.956 0.877 0.724 0.0
224136368984 predicted protein [Populus trichocarpa] 0.953 0.878 0.734 0.0
356527378995 PREDICTED: staphylococcal nuclease domai 0.962 0.876 0.727 0.0
357464897992 nuclease domain-containing protein [Medi 0.960 0.877 0.723 0.0
356512924991 PREDICTED: staphylococcal nuclease domai 0.961 0.878 0.725 0.0
>gi|356516458|ref|XP_003526911.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
 Score = 1363 bits (3529), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/910 (73%), Positives = 768/910 (84%), Gaps = 38/910 (4%)

Query: 1   MQVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNF 60
           ++V+EQG QKGEASP+LAELLRLEEQAK +GLGRWSKVPGAAEASIRNLPPSA+GD SNF
Sbjct: 115 VKVREQGQQKGEASPYLAELLRLEEQAKQEGLGRWSKVPGAAEASIRNLPPSALGDPSNF 174

Query: 61  NAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARR--PAAIV 118
           +AM  L+ANKG PM+ +VEQ RDGSTLR+YLLPEFQFVQVFVAGIQAP + RR  P ++V
Sbjct: 175 DAMTFLNANKGLPMEAVVEQVRDGSTLRIYLLPEFQFVQVFVAGIQAPQMGRRAAPESVV 234

Query: 119 DTD--TEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNRE 176
           + +  +++TNGDV   E  APL SAQRLA ST++   ++  +PFA DAK+FTEMRVLNR+
Sbjct: 235 EPELVSDDTNGDV-PGEPQAPLTSAQRLAVSTSA---ETAADPFAHDAKFFTEMRVLNRD 290

Query: 177 VRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAA 236
           VR+VLEGVDKF NLIGSV+YPDGE+AKDLA+ELVENG AKY+EWSANMMEE+AKR+LK A
Sbjct: 291 VRLVLEGVDKFSNLIGSVYYPDGESAKDLALELVENGYAKYVEWSANMMEEEAKRKLKTA 350

Query: 237 DLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERR 296
           +LQAKK RLRMWTNYVPP SNSKAIH+QNF+GKVVEVVSGDCI+VADDSIPYG+ LAERR
Sbjct: 351 ELQAKKDRLRMWTNYVPPPSNSKAIHNQNFSGKVVEVVSGDCIVVADDSIPYGSPLAERR 410

Query: 297 VNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAG 356
           VNLSSIRCPK+GNPR+DEKPA YAREA+EFLRTRLIGRQVNVQMEYSRKV      V   
Sbjct: 411 VNLSSIRCPKMGNPRRDEKPAPYAREAKEFLRTRLIGRQVNVQMEYSRKVSPTDGSVVPS 470

Query: 357 AKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQS 416
           A                            A+++R++DFGS+FLLS  K + DDA + A  
Sbjct: 471 A----------------------------ASDSRVMDFGSVFLLSGAKVDNDDAPSSAPP 502

Query: 417 NAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPP 476
            A  Q  GVNVAEL+V RG G VI HRDFEERSNYYDALLAAE+RA +G+KG +S+K+PP
Sbjct: 503 -AGSQQNGVNVAELIVGRGFGTVIRHRDFEERSNYYDALLAAESRAISGRKGTHSAKDPP 561

Query: 477 VMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVR 536
           VMHI DLT A  KKARDFLPFL RSRR+PAVVEYVLSGHRFK+LIPKETCSIAFSFSGVR
Sbjct: 562 VMHITDLTTASAKKARDFLPFLHRSRRVPAVVEYVLSGHRFKLLIPKETCSIAFSFSGVR 621

Query: 537 CPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAK 596
           CPGR E YS+EA+ LMR+KI+QRDVEIEVETVDRTGTFLGSLWESRTNVA+ LLEAGLAK
Sbjct: 622 CPGRAEPYSDEAIALMRRKIMQRDVEIEVETVDRTGTFLGSLWESRTNVAITLLEAGLAK 681

Query: 597 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTE 656
           LQTSFGSDRIPD HLL+QAE+SAK QKLKIWEN+VEGEEVSNGAAVE KQ+EVLKV+VTE
Sbjct: 682 LQTSFGSDRIPDFHLLDQAEQSAKRQKLKIWENFVEGEEVSNGAAVENKQQEVLKVIVTE 741

Query: 657 ILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAM 716
           +LGGGKFYVQ VGDQK+AS+QQQLASLNL++APV+GAFNPKKG+IVL  F AD SW RAM
Sbjct: 742 VLGGGKFYVQTVGDQKIASIQQQLASLNLKDAPVLGAFNPKKGDIVLCYFHADKSWYRAM 801

Query: 717 IVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPA 776
           +VN PR  VES ND FEVFY+DYGNQE+VPY++LRP+DPS+S+ P LAQLCSLAYIKIP 
Sbjct: 802 VVNTPRGPVESPNDLFEVFYVDYGNQEVVPYSQLRPVDPSVSAAPGLAQLCSLAYIKIPN 861

Query: 777 LEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISI 836
           LE+++G EAAE+L+E T NS  EFRA VEE+D+SGGK+KGQGTG +L VTLVAVDAEIS+
Sbjct: 862 LEEDFGQEAAEYLSELTLNSGKEFRAKVEEKDTSGGKVKGQGTGAILAVTLVAVDAEISV 921

Query: 837 NTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLPS 896
           N  M+QEGLAR E+R RW  +DRQ AL+NLE FQ+EAKT+R GMWQYGDIQSDDED  P 
Sbjct: 922 NAAMLQEGLARTEKRNRWDRKDRQTALDNLENFQDEAKTSRRGMWQYGDIQSDDEDTAPP 981

Query: 897 AVRKVAGGRR 906
             RK  GGR+
Sbjct: 982 P-RKTGGGRK 990

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356508886|ref|XP_003523184.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225447723|ref|XP_002273150.1| PREDICTED: staphylococcal nuclease domain-containing protein 1 [Vitis vinifera] gi|296088151|emb|CBI35621.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449440482|ref|XP_004138013.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Cucumis sativus] gi|449522262|ref|XP_004168146.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255539999|ref|XP_002511064.1| ebna2 binding protein P100, putative [Ricinus communis] gi|223550179|gb|EEF51666.1| ebna2 binding protein P100, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|307135996|gb|ADN33852.1| short-chain dehydrogenase/reductase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|224136368|ref|XP_002322312.1| predicted protein [Populus trichocarpa] gi|222869308|gb|EEF06439.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356527378|ref|XP_003532288.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357464897|ref|XP_003602730.1| nuclease domain-containing protein [Medicago truncatula] gi|355491778|gb|AES72981.1| nuclease domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356512924|ref|XP_003525164.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query906
TAIR|locus:2159218985 Tudor2 "TUDOR-SN protein 2" [A 0.561 0.516 0.636 1.4e-300
ZFIN|ZDB-GENE-030131-3124913 snd1 "staphylococcal nuclease 0.487 0.484 0.356 2.4e-106
RGD|631340909 Snd1 "staphylococcal nuclease 0.486 0.485 0.362 6.4e-106
UNIPROTKB|Q66X93909 Snd1 "Staphylococcal nuclease 0.486 0.485 0.362 6.4e-106
MGI|MGI:1929266910 Snd1 "staphylococcal nuclease 0.486 0.484 0.358 8.1e-106
UNIPROTKB|Q7KZF4910 SND1 "Staphylococcal nuclease 0.486 0.484 0.353 1.3e-105
UNIPROTKB|Q863B3910 SND1 "Staphylococcal nuclease 0.513 0.510 0.344 2.1e-105
UNIPROTKB|E2RH91910 SND1 "Uncharacterized protein" 0.486 0.484 0.355 2.7e-105
FB|FBgn0035121926 Tudor-SN "Tudor-SN" [Drosophil 0.491 0.480 0.290 1.6e-74
DICTYBASE|DDB_G0279659921 snd1 "Staphylococcus nuclease 0.403 0.397 0.332 1.8e-72
TAIR|locus:2159218 Tudor2 "TUDOR-SN protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1704 (604.9 bits), Expect = 1.4e-300, Sum P(2) = 1.4e-300
 Identities = 333/523 (63%), Positives = 412/523 (78%)

Query:   385 GATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRD 444
             GA + R++DFGS+FL SP KG+    +AVA   AA  P G N+AEL++SRGLG V+ HRD
Sbjct:   474 GAGD-RVMDFGSVFLPSPTKGD----TAVA---AAATP-GANIAELIISRGLGTVVRHRD 524

Query:   445 FEERSNYYDXXXXXXXXXXXXXXXCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRI 504
             FEERSN+YD                +S+K+ P +HI DLT+A  KKA+DFLP LQR  +I
Sbjct:   525 FEERSNHYDALLAAEARAIAGKKNIHSAKDSPALHIADLTVASAKKAKDFLPSLQRINQI 584

Query:   505 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 564
              AVVEYVLSGHRFK+ IPKE+CSIAF+FSGVRCPGR E YS EA+ LMR+KI+QRDVEI 
Sbjct:   585 SAVVEYVLSGHRFKLYIPKESCSIAFAFSGVRCPGRGEPYSEEAIALMRRKIMQRDVEIV 644

Query:   565 VETVDRTGTFLGSLWE--SRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQ 622
             VE VDRTGTFLGS+WE  S+TN    LLEAGLAK+QT FG+DRIP++H+LE AE+SAK+Q
Sbjct:   645 VENVDRTGTFLGSMWEKNSKTNAGTYLLEAGLAKMQTGFGADRIPEAHILEMAERSAKNQ 704

Query:   623 KLKIWENYVEGEEVSNGAA-VEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLA 681
             KLKIWENYVEGEEV NG++ VE +QKE LKVVVTE+LGGG+FYVQ VGDQKVAS+Q QLA
Sbjct:   705 KLKIWENYVEGEEVVNGSSKVETRQKETLKVVVTEVLGGGRFYVQTVGDQKVASIQNQLA 764

Query:   682 SLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGN 741
             +L+L++AP+IG+FNPKKG+IVLAQFS DNSWNRAMIVN PR  V+S  ++FEVFYIDYGN
Sbjct:   765 ALSLKDAPIIGSFNPKKGDIVLAQFSLDNSWNRAMIVNGPRGAVQSPEEEFEVFYIDYGN 824

Query:   742 QELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFR 801
             QE+VPY+ +RP+DPS+SS P LAQLC LAYIK+P  E+++G +A E+L+  T  S  EFR
Sbjct:   825 QEIVPYSAIRPVDPSVSSAPGLAQLCRLAYIKVPGKEEDFGRDAGEYLHTVTLESGKEFR 884

Query:   802 ALVEERDSSXXXXXXXXXXXXXHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQA 861
             A+VEERD+S              VTL+AVD EIS+N  M+QEG+AR+E+R+RW  +D+QA
Sbjct:   885 AVVEERDTSGGKVKGQGTGTELVVTLIAVDDEISVNAAMLQEGIARMEKRRRWEPKDKQA 944

Query:   862 ALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLPSAVRKVAGG 904
             AL+ LEKFQ+EA+ +R G+W+YGDIQSDDED +P  VRK   G
Sbjct:   945 ALDALEKFQDEARKSRTGIWEYGDIQSDDEDNVP--VRKPGRG 985
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0004518 "nuclease activity" evidence=ISS
GO:0016442 "RNA-induced silencing complex" evidence=IEA
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA
GO:0031047 "gene silencing by RNA" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0009686 "gibberellin biosynthetic process" evidence=IMP
GO:0009845 "seed germination" evidence=IMP
GO:0003723 "RNA binding" evidence=TAS
GO:0005635 "nuclear envelope" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009306 "protein secretion" evidence=IGI
GO:0009651 "response to salt stress" evidence=IGI;RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
ZFIN|ZDB-GENE-030131-3124 snd1 "staphylococcal nuclease domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|631340 Snd1 "staphylococcal nuclease and tudor domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q66X93 Snd1 "Staphylococcal nuclease domain-containing protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1929266 Snd1 "staphylococcal nuclease and tudor domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q7KZF4 SND1 "Staphylococcal nuclease domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q863B3 SND1 "Staphylococcal nuclease domain-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RH91 SND1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0035121 Tudor-SN "Tudor-SN" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279659 snd1 "Staphylococcus nuclease (SNase-like) domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q78PY7SND1_MOUSENo assigned EC number0.33700.80570.8021yesno
Q7KZF4SND1_HUMANNo assigned EC number0.33400.80680.8032yesno
Q66X93SND1_RATNo assigned EC number0.33700.80570.8030yesno
Q7ZT42SND1_DANRENo assigned EC number0.32510.80350.8115yesno
Q5REU4SND1_PONABNo assigned EC number0.33400.80680.8032yesno
Q863B3SND1_BOVINNo assigned EC number0.33400.80680.8032yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_XV0342
hypothetical protein (984 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query906
pfam00567118 pfam00567, TUDOR, Tudor domain 9e-33
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 4e-23
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 6e-22
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 3e-20
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 1e-19
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 4e-14
cd0450848 cd04508, TUDOR, Tudor domains are found in many eu 1e-13
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 9e-12
smart0033357 smart00333, TUDOR, Tudor domain 5e-11
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 9e-11
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 1e-10
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 1e-06
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 3e-06
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 2e-05
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 6e-05
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 2e-04
COG1525192 COG1525, COG1525, Micrococcal nuclease (thermonucl 5e-04
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 0.001
>gnl|CDD|215998 pfam00567, TUDOR, Tudor domain Back     alignment and domain information 
 Score =  122 bits (308), Expect = 9e-33
 Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 9/126 (7%)

Query: 647 KEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQ 705
              + VVVT I   G+FY+Q   D +K+  + ++L    L + P   +  PK G+  +A 
Sbjct: 1   GSTIDVVVTHIESPGRFYIQPKSDDKKLEKLTEELQEYYLSKPPE--SLPPKVGDGCVAA 58

Query: 706 FSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQ 765
           FS D  W RA I+      V   +   EVF+IDYGN E VP + LRP+    +S PP A 
Sbjct: 59  FSEDGKWYRAKIL------VSLDDGLVEVFFIDYGNTETVPLSDLRPLPSEFASLPPQAI 112

Query: 766 LCSLAY 771
            CSLA 
Sbjct: 113 KCSLAG 118

Length = 118
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|119391 cd04508, TUDOR, Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|197660 smart00333, TUDOR, Tudor domain Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|224442 COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 906
KOG2039875 consensus Transcriptional coactivator p100 [Transc 100.0
smart00318138 SNc Staphylococcal nuclease homologues. 99.93
cd00175129 SNc Staphylococcal nuclease homologues. SNase homo 99.91
KOG2039 875 consensus Transcriptional coactivator p100 [Transc 99.9
PRK06518177 hypothetical protein; Provisional 99.87
smart00318138 SNc Staphylococcal nuclease homologues. 99.85
PF00567121 TUDOR: Tudor domain; InterPro: IPR008191 There are 99.83
cd00175129 SNc Staphylococcal nuclease homologues. SNase homo 99.81
PF00565108 SNase: Staphylococcal nuclease homologue; InterPro 99.78
COG1525192 Micrococcal nuclease (thermonuclease) homologs [DN 99.75
PRK06518177 hypothetical protein; Provisional 99.73
COG1525192 Micrococcal nuclease (thermonuclease) homologs [DN 99.62
PF00565108 SNase: Staphylococcal nuclease homologue; InterPro 99.61
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 99.29
cd0450848 TUDOR Tudor domains are found in many eukaryotic o 99.28
KOG2279608 consensus Kinase anchor protein AKAP149, contains 98.89
smart0074361 Agenet Tudor-like domain present in plant sequence 98.53
PF06003264 SMN: Survival motor neuron protein (SMN); InterPro 98.05
PF0946555 LBR_tudor: Lamin-B receptor of TUDOR domain; Inter 96.25
KOG2279608 consensus Kinase anchor protein AKAP149, contains 95.67
PF0564168 Agenet: Agenet domain; InterPro: IPR008395 This do 95.24
PF1171755 Tudor-knot: RNA binding activity-knot of a chromod 92.17
PF15057124 DUF4537: Domain of unknown function (DUF4537) 90.52
KOG4327218 consensus mRNA splicing protein SMN (survival moto 90.22
KOG3026262 consensus Splicing factor SPF30 [RNA processing an 90.06
PF15057124 DUF4537: Domain of unknown function (DUF4537) 89.89
KOG3038264 consensus Histone acetyltransferase SAGA associate 85.37
>KOG2039 consensus Transcriptional coactivator p100 [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-81  Score=760.50  Aligned_cols=750  Identities=43%  Similarity=0.704  Sum_probs=647.3

Q ss_pred             ceecccccCCCCchHHHHHHHHHHHHHHcCCCcccCCCCccccccccCCCCccCCCCccchHHHHhhhcCCceeEEEEEE
Q 002576            2 QVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQA   81 (906)
Q Consensus         2 kv~~~~~~~~~~~~~~~~L~~~e~~Ak~~~~G~w~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ve~V   81 (906)
                      +||+.+.   ..++|...|...|.+|++.++|+|++.    ....|++.|+.      .++..|+..++++++.|+|++|
T Consensus       108 ~~~~~~~---~~~~~~~~l~~~~~~~k~~~~g~w~~~----~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~ve~v  174 (875)
T KOG2039|consen  108 DVRDEGV---RNSSYFKTLDEVEVQAKQSGRGIWSKL----DHFIRNLKDSA------LNPAELVDAVGGKPVNAIVEHV  174 (875)
T ss_pred             ccccccc---ccchhhhhhhhhhhhhhhhcccccccc----ccceeeccccc------cccHHHHHhcCCceeeeehhhc
Confidence            4555542   227899999999999999999999943    34578998874      5789999999999999999999


Q ss_pred             ecCC-EEEEEEcCCCeEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHhhhhcccCCCCCCCchh
Q 002576           82 RDGS-TLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPF  160 (906)
Q Consensus        82 ~DGd-t~~v~l~~~~~~~~v~laGI~aPe~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  160 (906)
                      ++|+ +.||.+.|++..++++|+|+.||.+..+.           +|.                        + ...+||
T Consensus       175 ~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s-----------~~~------------------------~-~~~~~~  218 (875)
T KOG2039|consen  175 RDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPS-----------DGS------------------------P-SVPDPF  218 (875)
T ss_pred             cChhhhhhHHhccccceeEEecccccCCCCCCCC-----------CCC------------------------C-CCCCcH
Confidence            9999 68888888888999999999999987532           111                        1 235899


Q ss_pred             HHHHHHHHHHHhcCCeEEEEEeeccCCCcEEEEEEeCCCCChHHHHHHHHHcCceEEeecccccchHHHHHHHHHHHHHH
Q 002576          161 ALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQA  240 (906)
Q Consensus       161 g~eAk~f~e~~ll~r~V~v~~~~~D~~gr~~g~V~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~~~~~~~~l~~aE~~A  240 (906)
                      +.+|+.|++.++++|.|.|.+++...+..++|+|++++|+    |++.|+.+|++++++|+...+..+....++.+|..+
T Consensus       219 ~~~a~~f~~~~~~~r~~~i~~~~~~~~~~~~g~v~~~~~~----i~~~~~~~~~~k~v~~s~~~~~~~~~~~~~~~e~~~  294 (875)
T KOG2039|consen  219 ADEAKLFSEDRLLQRAVAIPLESEENYVFFVGDVLYPDGN----IALELLSEGLAKCVDWSKNEIPCGAAKKLRAAERLA  294 (875)
T ss_pred             HHHHHHhcccchhhhceeeeeccccccccccccccccccc----eeeehhccchHHHHHhhhhccCchhhhhhhHHhhcc
Confidence            9999999999999999999999999887889999999994    999999999999999999999888887899999999


Q ss_pred             HHhcccc-ccccCCCCCCccccccceeeEEEEEEEeCCEEEEecCCCCCCCCCcceEEEEeeccCCCCCCCCCCCC--Cc
Q 002576          241 KKTRLRM-WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEK--PA  317 (906)
Q Consensus       241 k~~r~Gl-W~~~~~~~~~~~~~~~~~~~~~V~~V~~gD~i~v~~~~~~~~~~~~~~~v~l~~i~~P~~~~~~~~~~--~~  317 (906)
                      +..+..+ |+++.++.+++..+..+.|+++|++++.+||+.+..++   |+   +.++.+++|+.|+.+.+.+..+  ..
T Consensus       295 ~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v~e~~~~d~~~~~~~s---g~---~~~~~~~~i~~pr~~~~~~~~~p~~~  368 (875)
T KOG2039|consen  295 KEHRLRVLWKNYQVPLSTSESIDDKGFSGKVVEVLVSDCVLVALDS---GS---ENKLFLSSIRLPRAGEPGRSLKPYIS  368 (875)
T ss_pred             chhHHHHHHhccccccchheeeccccccceeeeeeccCceEEecCC---CC---ceEEEeeeccCccccccccccCCccc
Confidence            9999999 99999998888776678899999999999999999976   33   7899999999999444333333  48


Q ss_pred             hhHHHHHHHHHhhcCCcEEEEEEEEeeecccccccccccCCCCCCCCCCCCCCCccccCCCCCCcccCccccceeeEEEE
Q 002576          318 AYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSI  397 (906)
Q Consensus       318 ~~~~ea~e~lr~~l~Gk~v~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  397 (906)
                      ||+.+|++|||+++||+.|.+.++|.|+..                +.                     +++   ..   
T Consensus       369 ~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~----------------~~---------------------~~~---~~---  405 (875)
T KOG2039|consen  369 PVQLVAREFLRKKLIGKRVILQMDVIRPRR----------------EN---------------------VPT---KV---  405 (875)
T ss_pred             cHHHHhhhhhhhhccCceeeEeeecccccc----------------cc---------------------ccc---cc---
Confidence            999999999999999999999999998631                00                     110   11   


Q ss_pred             EecCCCCCCCCCchhhhhcccCCCCCCccHHHHHHhcCceEEEEec-CccccchHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 002576          398 FLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPP  476 (906)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~lv~~G~a~v~~~~-~~~~~~~~~~~l~~ae~~A~~~~~G~~~~~~~~  476 (906)
                                    |.+..     +.|.|+++.++.+|++.+.+|| ++.+++.+||.|+.+|..|.+.++|+|+.+..+
T Consensus       406 --------------c~~~~-----~~~~~~a~~~~~kg~~~~v~~~~~~~~~s~~~d~ll~~E~~~~~~~~~~~s~~~~~  466 (875)
T KOG2039|consen  406 --------------CALPL-----GGGKNVAELLVKKGLATVVRKRQDDEQRSSHYDLLLVAEAIAIKGKKGCHSKKLDP  466 (875)
T ss_pred             --------------ccccC-----CCcceeeEEEecccchhhhhhHhhhhhhcchhhhhhcchHHHHhhhhhhcccCCCc
Confidence                          22221     2479999999999999999999 688899999999999999999999999998876


Q ss_pred             cceeeeCCccchhcccccchhhhcCCcccEEEEEEecCCEEEEEecCCceeEEEEEecccCCC-------CCCcchHHHH
Q 002576          477 VMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPG-------RNERYSNEAL  549 (906)
Q Consensus       477 ~~~i~d~~~~~~~~a~~~l~~l~~~~~~~~vVe~V~~G~~~~v~ip~e~~~I~~~LaGI~~P~-------~~e~~~~EA~  549 (906)
                      .+++.+++..-..++..|++++++...+..+|+++++|+++++++|++.+.++|.++|++||+       .+++|+++|.
T Consensus       467 ~~~~~~~~~~i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~~~~~~g~~~~~~~r~~~~~~e~~~~~~~  546 (875)
T KOG2039|consen  467 TLRITDLTVDIVRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYCQFALAGIDCPSGARNDVQEGEPFSEEAI  546 (875)
T ss_pred             ceeechhhhhhhcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeEEEeeccccCcccccccccccCCccHHHH
Confidence            777888875333444599999999999999999999999999999999999999999999997       5899999999


Q ss_pred             HHHHHHhcCceEEEEEEEECCCCcEEEEEEeC-CccHHHHHHHcCCeEEeeccCCCCCCchHHHHHHHHHHH-hhccccc
Q 002576          550 LLMRQKILQRDVEIEVETVDRTGTFLGSLWES-RTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAK-SQKLKIW  627 (906)
Q Consensus       550 ~flk~~llqR~V~v~v~~~Dk~G~~ig~L~~~-~~nia~~LVe~GLA~v~~~~s~~~~~~~~~L~~AE~~AK-~~k~giW  627 (906)
                      .|++.++++++++++++.+++.|+|+|.++.+ +.+++..++++||+.++  |..+.+.....|..++..|+ ..+.++|
T Consensus       547 ~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~~s~~~~e~~L~~~~--~~~e~~~~~~~~~s~~~~ak~~~k~~~~  624 (875)
T KOG2039|consen  547 EFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTNLSLKLLEQGLAPEH--FAAERSSEYPPLESAELPAKLEQKLKIW  624 (875)
T ss_pred             HHhhhheeccceEEEEeeeccCccccccccccccccchhhhhhhhcCccc--hhhhhhhhccchhhhhhccccchhccee
Confidence            99999999999999999999999999999987 88999999999999997  77776777778899999999 9999999


Q ss_pred             ccccccccccCC--ccccCCCCcEEEEEEEEEecCCeEEEEecC-cHHHHHHHHHHHHHHccCCCCCCCCCCcCCCEEEE
Q 002576          628 ENYVEGEEVSNG--AAVEGKQKEVLKVVVTEILGGGKFYVQQVG-DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLA  704 (906)
Q Consensus       628 ~~~~~~~~~~~~--~~~~~~~~~~~~V~VT~V~sp~~FyvQ~~~-~~~le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA  704 (906)
                      .++.++..+...  .........+..++++.|..++.||+|..+ ...+++||..|+.......|..+++.|+.|++|+|
T Consensus       625 ~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~i~p~~~F~~q~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~gd~c~A  704 (875)
T KOG2039|consen  625 LNYVEPVVEEVVLCLEKDERDLNTLKVVVTEITPGKGFYVQSISDGSKITKIMTNLSQLVELKPPSSGSYTPKRGDLCVA  704 (875)
T ss_pred             ecccccchhhheecccccccccccceeeEeeecCCCcceeecccchHHHHHHHHHHHHHhhhcccccCCCCCCCCCeeee
Confidence            999876332111  111124456778888888877999999998 48899999999998887778888899999999999


Q ss_pred             EEcCCCceEEEEEEeecccccccCCCEEEEEEeecCCeeeecCCCcccCCccccCcccccceeeecceecCCCCCCCcHH
Q 002576          705 QFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPE  784 (906)
Q Consensus       705 ~fs~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fIDYGn~e~V~~s~Lr~Lp~~f~~lP~qAi~c~La~V~p~~~~~~w~~e  784 (906)
                      +|+.|++||||.|+++.      ....++||||||||.+++|+.+|++||+.|..+|++|.+|+|++|+++. +.++.++
T Consensus       705 ~y~~D~qwyRa~i~~V~------~~~~~~V~yiDygn~E~lp~~~l~~lp~~~~~~p~~a~~~~L~~ik~~~-~~~~~e~  777 (875)
T KOG2039|consen  705 KYSLDGQWYRALIVEVL------DPESMEVFYIDYGNIETLPFVRLKPLPPHFSLLPPVAQECGLAGIKEPQ-LEDLKEE  777 (875)
T ss_pred             eeccccceeeeeeeeec------cCcceeEEEEecCcccccccccccCCChHHhcCchHHhhhhhhcccCCc-ccchHHH
Confidence            99999999999999984      2289999999999999999999999999999999999999999999985 5789999


Q ss_pred             HHHHHhhccccCCCEEEEEEEEEeCCCCcccCCCCccEEEEEEEecCCCCcHHHHHHH-cCCeeEecccccCchhhHHHH
Q 002576          785 AAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQ-EGLARVERRKRWGSRDRQAAL  863 (906)
Q Consensus       785 A~~~l~~~llv~gk~l~a~V~~~~~~~~~~~~~~~~~~~~VtL~d~~~~~sIn~~LV~-~GlA~v~~~~~~~~~~~~~~~  863 (906)
                      ++.+|.+  .+.++.+++.+....          .+..++++|+...+..++++.|+. +|+.....++.  .+.++...
T Consensus       778 ~i~~l~~--~~~~~~~~~~~~~~i----------~~~~~~~~l~~~~~~~d~~~~l~~~~~l~~~~~~~~--~~~~q~~~  843 (875)
T KOG2039|consen  778 AIRYLDE--DTLGHKCQVNVELRV----------VGNSLLVTLLYTVEELDVGEELVAVEGLSLVEQRKT--EEVLQALL  843 (875)
T ss_pred             HHHHHHH--Hhhcccceeeeeeee----------eccceeEEEeeecCcCChhHhhhhhccccccccccc--chHHHHHh
Confidence            9999999  677887777744332          145688999887789999999999 99999887662  26789999


Q ss_pred             HHHHHHHHHHHHhcccccccCCCCCCCCCCCc
Q 002576          864 ENLEKFQEEAKTARIGMWQYGDIQSDDEDPLP  895 (906)
Q Consensus       864 ~~l~~aqe~Ak~~r~giW~yGDi~~dde~~~~  895 (906)
                      +.|+.+|+.|++.|+++|.|||++.+|+|+++
T Consensus       844 ~~~~~~qq~a~~~~~~~~~y~~~~~~~~~~~~  875 (875)
T KOG2039|consen  844 DQLEKAQQEARKEHLNIWFYGDVTGKDADEVV  875 (875)
T ss_pred             hHhhhchhhHHhhhhhhhhhcCcccCcccccC
Confidence            99999999999999999999999999999873

>smart00318 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>cd00175 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>KOG2039 consensus Transcriptional coactivator p100 [Transcription] Back     alignment and domain information
>PRK06518 hypothetical protein; Provisional Back     alignment and domain information
>smart00318 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins [] Back     alignment and domain information
>cd00175 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes Back     alignment and domain information
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06518 hypothetical protein; Provisional Back     alignment and domain information
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins Back     alignment and domain information
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane Back     alignment and domain information
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO [] Back     alignment and domain information
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification] Back     alignment and domain information
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification] Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query906
3bdl_A570 Crystal Structure Of A Truncated Human Tudor-Sn Len 2e-59
3omg_A261 Structure Of Human Snd1 Extended Tudor Domain In Co 6e-24
2hqx_A246 Crystal Structure Of Human P100 Tudor Domain Conser 7e-22
2wac_A218 Extended Tudor Domain Of Drosophila Melanogaster Tu 2e-21
2o4x_A217 Crystal Structure Of Human P100 Tudor Domain Length 2e-18
2e6n_A104 Solution Structure Of The Tudor Domain Of Staphyloc 4e-09
2o4x_B91 Crystal Structure Of Human P100 Tudor Domain Length 5e-09
4b9w_A201 Structure Of Extended Tudor Domain Td3 From Mouse T 6e-06
4b9x_A226 Structure Of Extended Tudor Domain Td3 From Mouse T 7e-06
4j1m_A143 Crystal Structure Of Staphylococcal Nuclease Varian 4e-04
4iun_A143 Crystal Structure Of Staphylococcal Nuclease Varian 4e-04
3hej_A143 Crystal Structure Of Staphylococcal Nuclease Varian 5e-04
3mhb_A143 Crystal Structure Of Staphylococcal Nuclease Varian 5e-04
>pdb|3BDL|A Chain A, Crystal Structure Of A Truncated Human Tudor-Sn Length = 570 Back     alignment and structure 
Iteration: 1

 Score =  227 bits (579), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 164/471 (34%), Positives = 248/471 (52%), Gaps = 45/471 (9%)
Query: 423 AGVNVAELVVSRGLGNVINHR-DFEERSNYYDXXXXXXXXXXXXXXXCYSSKEPPVMHIQ 481
            G+N+AE +VS+GL  VI +R D ++RS++YD                +S KE P+  + 
Sbjct: 128 GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVA 187
Query: 482 DLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCP--G 539
           D++    +KA+ FLPFLQR+ R  AVVEYV SG R K+ +PKETC I F  +G+ CP   
Sbjct: 188 DIS-GDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGA 246
Query: 540 RN--------ERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLE 591
           RN        E +S EA L  ++ +LQR+VE+EVE++D+ G F+G L     N++V+L+E
Sbjct: 247 RNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVLLVE 306
Query: 592 AGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEG--EEVSNGAAVEGKQKEV 649
             L+K+   F ++R      L  AE++AK +K K+W +Y E   EEV      + +    
Sbjct: 307 HALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSASY 364
Query: 650 LKVVVTEILGGGKFYVQQV--GDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFS 707
             V VTEI     FYVQ V  G Q +  + + + +      PV G++ P++GE  +A+F 
Sbjct: 365 KPVFVTEITDDLHFYVQDVETGTQ-LEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKF- 422
Query: 708 ADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQ 765
            D  W RA +     EKVES   K  VFYIDYGN+E++P  +L  + P+ S+   P  A 
Sbjct: 423 VDGEWYRARV-----EKVES-PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQAT 476
Query: 766 LCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSXXXXXXXXXXXXXHV 825
             + A+I++P  +D+   +A + +     N+       VE   +              HV
Sbjct: 477 EYAFAFIQVPQ-DDDARTDAVDSVVRDIQNTQCLLN--VEHLSAG-----------CPHV 522
Query: 826 TLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTA 876
           TL   D++  +   +V+EGL  VE RK    +  Q  +      QE AK+A
Sbjct: 523 TLQFADSKGDVGLGLVKEGLVMVEVRK---EKQFQKVITEYLNAQESAKSA 570
>pdb|3OMG|A Chain A, Structure Of Human Snd1 Extended Tudor Domain In Complex With The Symmetrically Dimethylated Arginine Piwil1 Peptide R14me2s Length = 261 Back     alignment and structure
>pdb|2HQX|A Chain A, Crystal Structure Of Human P100 Tudor Domain Conserved Region Length = 246 Back     alignment and structure
>pdb|2WAC|A Chain A, Extended Tudor Domain Of Drosophila Melanogaster Tudor-Sn ( P100) Length = 218 Back     alignment and structure
>pdb|2O4X|A Chain A, Crystal Structure Of Human P100 Tudor Domain Length = 217 Back     alignment and structure
>pdb|2E6N|A Chain A, Solution Structure Of The Tudor Domain Of Staphylococcal Nuclease Domain-Containing Protein 1 Length = 104 Back     alignment and structure
>pdb|2O4X|B Chain B, Crystal Structure Of Human P100 Tudor Domain Length = 91 Back     alignment and structure
>pdb|4B9W|A Chain A, Structure Of Extended Tudor Domain Td3 From Mouse Tdrd1 In Complex With Mili Peptide Containing Dimethylarginine 45. Length = 201 Back     alignment and structure
>pdb|4B9X|A Chain A, Structure Of Extended Tudor Domain Td3 From Mouse Tdrd1 Length = 226 Back     alignment and structure
>pdb|4J1M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs R105e At Cryogenic Temperature Length = 143 Back     alignment and structure
>pdb|4IUN|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs R126e At Cryogenic Temperature Length = 143 Back     alignment and structure
>pdb|3HEJ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+p Cryogenic Temperature Length = 143 Back     alignment and structure
>pdb|3MHB|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs L38a At Cryogenic Temperature Length = 143 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query906
3bdl_A570 Staphylococcal nuclease domain-containing protein 1e-123
3bdl_A570 Staphylococcal nuclease domain-containing protein 7e-18
3bdl_A570 Staphylococcal nuclease domain-containing protein 7e-15
3bdl_A 570 Staphylococcal nuclease domain-containing protein 2e-04
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 1e-58
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 4e-04
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 4e-53
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 3e-07
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 7e-05
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 2e-35
2diq_A110 Tudor and KH domain-containing protein; tudor doma 3e-21
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 1e-20
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 5e-19
2d9t_A78 Tudor domain-containing protein 3; structural geno 8e-19
3s6w_A54 Tudor domain-containing protein 3; methylated argi 8e-18
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 2e-15
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 6e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1g5v_A88 SurviVal motor neuron protein 1; mRNA processing, 9e-12
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 2e-08
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 5e-07
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 9e-06
2eqk_A85 Tudor domain-containing protein 4; structural geno 9e-08
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
 Score =  383 bits (983), Expect = e-123
 Identities = 203/653 (31%), Positives = 310/653 (47%), Gaps = 117/653 (17%)

Query: 248 WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKI 307
            +  VP  S+     D+ F  KV++V++ D I+V  +S         + ++LSSIR P++
Sbjct: 11  SSGLVPRGSHM----DKQFVAKVMQVLNADAIVVKLNSGD------YKTIHLSSIRPPRL 60

Query: 308 GNPRKDEKPA--------AYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKG 359
                 +K           Y  EAREFLR +LIG++VNV ++Y R               
Sbjct: 61  EGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVDYIRPA------------- 107

Query: 360 PAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAA 419
                                 E+V A   R     ++ +                    
Sbjct: 108 ------------------SPATETVPAFSER--TCATVTI-------------------- 127

Query: 420 GQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVM 478
               G+N+AE +VS+GL  VI +R D ++RS++YD LLAAEARA    KG +S KE P+ 
Sbjct: 128 ---GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIH 184

Query: 479 HIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCP 538
            + D      +KA+ FLPFLQR+ R  AVVEYV SG R K+ +PKETC I F  +G+ CP
Sbjct: 185 RVAD-ISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECP 243

Query: 539 ----------GRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVI 588
                        E +S EA L  ++ +LQR+VE+EVE++D+ G F+G L     N++V+
Sbjct: 244 RGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVL 303

Query: 589 LLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENY--VEGEEVSNGAAVEGKQ 646
           L+E  L+K+   F ++R      L  AE++AK +K K+W +Y     EEV      + + 
Sbjct: 304 LVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERS 361

Query: 647 KEVLKVVVTEILGGGKFYVQQVGDQ-KVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQ 705
                V VTEI     FYVQ V    ++  + + + +      PV G++ P++GE  +A+
Sbjct: 362 ASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAK 421

Query: 706 FSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSST--PPL 763
           F  D  W RA +             K  VFYIDYGN+E++P  +L  + P+ S+   P  
Sbjct: 422 FV-DGEWYRARVEKVES------PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQ 474

Query: 764 AQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLL 823
           A   + A+I++P  +D+   +A + +     N+  +    VE                  
Sbjct: 475 ATEYAFAFIQVPQ-DDDARTDAVDSVVRDIQNT--QCLLNVEHLS-----------AGCP 520

Query: 824 HVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTA 876
           HVTL   D++  +   +V+EGL  VE RK    +  Q  +      QE AK+A
Sbjct: 521 HVTLQFADSKGDVGLGLVKEGLVMVEVRK---EKQFQKVITEYLNAQESAKSA 570
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Length = 169 Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Length = 110 Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} Length = 94 Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Length = 77 Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Length = 78 Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Length = 54 Back     alignment and structure
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Length = 64 Back     alignment and structure
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Length = 59 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Length = 88 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 906
d2diqa197 b.34.9.1 (A:8-104) Tudor and KH domain-containing 2e-20
d2hqxa190 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human ( 2e-18
d2d9ta160 b.34.9.1 (A:8-67) Tudor domain-containing protein 4e-17
d1mhna_59 b.34.9.1 (A:) Survival motor neuron protein 1, smn 6e-14
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 8e-10
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 4e-05
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 0.002
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 0.004
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.6 bits (209), Expect = 2e-20
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 693 AFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRP 752
                 G+IV A    + SW RA ++          N   +++++D+G+    P   LR 
Sbjct: 23  DLTVHVGDIVAAPLPTNGSWYRARVLGTLE------NGNLDLYFVDFGDNGDCPLKDLRA 76

Query: 753 IDPSLSSTPPLAQLCSLAYI 772
           +     S P  A  CSLA I
Sbjct: 77  LRSDFLSLPFQAIECSLARI 96
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 60 Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Length = 59 Back     information, alignment and structure
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query906
d1snoa_136 Staphylococcal nuclease {Staphylococcus aureus [Ta 99.94
d1snoa_136 Staphylococcal nuclease {Staphylococcus aureus [Ta 99.9
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 99.89
d2hqxa190 P100 co-activator, SND1 {Human (Homo sapiens) [Tax 99.85
d1mhna_59 Survival motor neuron protein 1, smn {Human (Homo 99.55
d2d9ta160 Tudor domain-containing protein 3, TDRD3 {Mouse (M 99.55
d1wgsa_133 Probable histone acetyltransferase MYST1 {Mouse (M 95.65
d2buda188 Putative histone acetyltransferase MOF {Fruit fly 94.82
d2qqra256 Jumonji domain-containing protein 2A {Human (Homo 91.27
d2qqra159 Jumonji domain-containing protein 2A {Human (Homo 88.21
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Staphylococcal nuclease
family: Staphylococcal nuclease
domain: Staphylococcal nuclease
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.94  E-value=1.1e-25  Score=171.27  Aligned_cols=130  Identities=22%  Similarity=0.331  Sum_probs=106.4

Q ss_pred             CCEEEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             95309999981299899998289707999983204899899898644686444578732000014212678865210237
Q 002576           72 RPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASA  151 (906)
Q Consensus        72 ~~~~~iVe~V~dG~t~rv~l~~~~~~i~v~laGI~~P~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  151 (906)
                      ..-+|.|.+|.|||||+|..  +++.++|||+||||||++++                                      
T Consensus         3 ~~~~a~V~~V~DGDT~~v~~--~~~~~~vRL~GIdaPE~~~~--------------------------------------   42 (136)
T d1snoa_           3 HKEPATLIKAIDGDTVKLMY--KGQPMTFRLLLVDTPETKHP--------------------------------------   42 (136)
T ss_dssp             CEEEEEEEEECSSSEEEEEE--TTEEEEEEETTEECCCSSBT--------------------------------------
T ss_pred             CCCCEEEEEEECCCEEEEEE--CCCEEEEEEEEECCCCCCCC--------------------------------------
T ss_conf             32252999997199999986--99688999987736654667--------------------------------------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHC-CCEEEEEEE---ECCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHH
Q ss_conf             9999874349999999997706-986999991---106999689999937999968899999871856886333220208
Q 002576          152 GQQSTDEPFALDAKYFTEMRVL-NREVRIVLE---GVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEE  227 (906)
Q Consensus       152 ~~~~~~ep~a~eAk~f~e~rll-~r~V~i~~~---~~D~~g~~~g~V~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~~~  227 (906)
                        ..+.+|||.+|+.|++.+|. ++.|.+.+.   +.|+|||++|+|+. +|.+   |+++||++|||+++........ 
T Consensus        43 --~~~~~~~g~eA~~~l~~ll~~~~~v~~~~~~~~~~D~~gR~la~v~~-~g~~---l~~~Lv~~G~A~~~~~~~~~~~-  115 (136)
T d1snoa_          43 --KKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYA-DGKM---VNEALVRQGLAKVAYVYKPNNT-  115 (136)
T ss_dssp             --TTBSCTTHHHHHHHHHHHHHTCSCEEEEECSSCSBCTTSCEEEEEEE-TTEE---HHHHHHHTTSCEECCCBTTBCT-
T ss_pred             --CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEEE-ECCH---HHHHHHHCCCEEEEEECCCCHH-
T ss_conf             --86233558999999999851684169999556457764431268887-4333---5899987898798035288826-


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9999999999999982553565
Q 002576          228 DAKRRLKAADLQAKKTRLRMWT  249 (906)
Q Consensus       228 ~~~~~l~~aE~~Ak~~r~glW~  249 (906)
                       +...|+.||.+||++++|||+
T Consensus       116 -~~~~l~~ae~~Ak~~~~GlWs  136 (136)
T d1snoa_         116 -HEQLLRKSEAQAKKEKLNIWS  136 (136)
T ss_dssp             -THHHHHHHHHHHHHTTCGGGC
T ss_pred             -HHHHHHHHHHHHHHCCCCCCC
T ss_conf             -799999999999981888899
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2buda1 b.34.13.3 (A:367-454) Putative histone acetyltransferase MOF {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2qqra2 b.34.9.1 (A:956-1011) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure