Citrus Sinensis ID: 002587

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900----
MMPDISIRSSMYKSPDYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEGSLSSIDGLFKKLSDNKGGFLNEEELRADPAYVNYYYSNVNLNPRLPPPLLSKEDWRFTQRLRGGGEVGGIGDRRKGNGSLFAVQPGFGGKEEENSGGSGGGGEWGGDGLIGLPGLGLGSRQKSIAEIIQDDMSHGAPVSRHPSRPPSRNAFEDAIESSETQFAHLHHDLSSIDGLGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLNGYSMNPSSPSMMGSPIGSGNLPPLYENAAAASAMAGNGLDARTLASLGLGPNVMAAAAELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQVCFGP
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccccccccccHHHHHHHHHHccccccccccccHHHHHcccccEEEccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccHHHHcccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccHHHHccccHHcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccc
cccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccccccccHHHHHccHHHHHHHEcccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccHHHHHHHHccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccHccccccccccccccccccccccHHHHHHHccHHHHHHHcccccccccccccccccEEccccccccccccccHccccccEEEccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccHHHHcccHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHEEEEEccc
mmpdisirssmykspdyVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNifrsgsapptvegslSSIDGLFKKlsdnkggflneeelradpayvNYYYsnvnlnprlpppllskedwRFTQrlrgggevggigdrrkgngslfavqpgfggkeeensggsggggewggdgliglpglglgsrQKSIAEIIQddmshgapvsrhpsrppsrnafEDAIESSETQFAHLHHDlssidglgssankqgmpsaqsigtsashSYASALGaslsrsttpdpqlmarapspriptagvgrassmdkrtvsgplplngvspslkDSAEIVAALSGlnlstdgvadqennsrsqnqheiddrhslfnlqgdsrhmkqhpflgrsesghLLMHsashstkgsypnmgksgvgidmnnaslmadghksalsssnsylkgpctptlngggnspshhQVMGNMnsafsnfslngysmnpsspsmmgspigsgnlpplyeNAAAASAMAgngldartlaslglgpNVMAAAAELQSMNRlgnhtagsalqaplmdplylqYLRSNEYAAAQVAslndpamdigNSYMDLLGLQKAYLGAllspqksqygvpylnksgslnnnlygnpafglgmsypggpllpnspvgsgspvrhgdrnmrfpsgmrnlsggvmgpwhseaggsldeSFASSLLdefksnktkcfeLSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMrcvrdqngnhVIQKCIECVPEDAIQFIVLTFYDQVVtlsthpygcRVIQRVLEHChdektqsiMMDEILQSVCMLAQDQYGNYVVQVCFGP
mmpdisirssmykspDYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFrsgsapptvegSLSSIDGLFKKLSDNKGGFLNEEELRADPAYVNYYYSNVNLNPRLPPPLLSKEDWRFTQRLrgggevggigdrrkgngSLFAVQPGFGGKEEENSGGSGGGGEWGGDGLIGLPGLGLGSRQKSIAEIIQDDMSHGAPVSRHPSRPPSRNAFEDAIESSETQFAHLHHDLSSIDGLGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLmarapspriptagvgrassmdkrtvsGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNsrsqnqheidDRHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLNGYSMNPSSPSMMGSPIGSGNLPPLYENAAAASAMAGNGLDARTLASLGLGPNVMAAAAELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQVCFGP
MMPDISIRSSMYKSPDYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEGSLSSIDGLFKKLSDNKGGFLNEEELRADPAyvnyyysnvnlnprlpppllSKEDWRFTQrlrgggevggigdrrkgNGSLFAVQPgfggkeeensggsggggewggdgliglpglglgsRQKSIAEIIQDDMSHGAPVsrhpsrppsrNAFEDAIESSETQFAHLHHDLSSIDGLGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLngysmnpsspsmmgspigsgnLPPLYENaaaasamaGNGLDARTLASLGLGPNVMAAAAELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQVCFGP
***********************************************************************************GFLNEEELRADPAYVNYYYSNVNLNPRLPPPLLSKEDWRFTQRLRGGGEV**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************TLASLGLGPNVMAA***************GSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMS*************************************************************FKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQVCF**
********************LGKLIR*************************************VEGSLSSIDG****************ELRADPAYVNYYYSNVNLNPRLPPPLL***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************T*CFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQVCFGP
MMPDISIRSSMYKSPDYVEDLGKLIREQ****************AADLEKELNIFRSGSAPPTVEGSLSSIDGLFKKLSDNKGGFLNEEELRADPAYVNYYYSNVNLNPRLPPPLLSKEDWRFTQRLRGGGEVGGIGDRRKGNGSLFAVQPGFG************GGEWGGDGLIGLPGLGLGSRQKSIAEIIQDDM******************FEDAIESSETQFAHLHHDLSSIDGLGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDG**************EIDDRHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLNGYSMNPSSPSMMGSPIGSGNLPPLYENAAAASAMAGNGLDARTLASLGLGPNVMAAAAELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQVCFGP
*************SPDYVEDLGKLIREQKQQQHLQEATQ**SASAADLEKELNIFRSGSAPPTVEGSLSSIDGLFK*******GFLNEEELRADPAYVNYYYSNVNLNPRLPPPLLSKEDWRFTQRLRGGG**********************************************L*GL*LGSRQKSIAEIIQDDMSHGAPV*********************************************************************************APSP***********************************************************************************************LLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLNGYSMNPSSPSMMGSPIGSGNLPPLYENAAAASAMAGNGLDARTLASLGLGPNVMAAAAELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQVCFGP
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MMPDISIRSSMYKSPDYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEGSLSSIDGLFKKLSDNKGGFLNEEELRADPAYVNYYYSNVNLNPRLPPPLLSKEDWRFTQRLRGGGEVGGIGDRRKGNGSLFAVQPGFGGKEEENSGGSGGGGEWGGDGLIGLPGLGLGSRQKSIAEIIQDDMSHGAPVSRHPSRPPSRNAFEDAIESSETQFAHLHHDLSSIDGLGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLNGYSMNPSSPSMMGSPIGSGNLPPLYENAAAASAMAGNGLDARTLASLGLGPNVMAAAAELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDIGNSYMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSYPGGPLLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQVCFGP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query904 2.2.26 [Sep-21-2011]
Q9ZW07 968 Pumilio homolog 1 OS=Arab yes no 0.862 0.805 0.513 0.0
Q9ZW06 972 Pumilio homolog 2 OS=Arab no no 0.863 0.803 0.505 0.0
Q9ZW02 964 Pumilio homolog 3 OS=Arab no no 0.860 0.807 0.496 0.0
Q9SS47 1003 Pumilio homolog 4 OS=Arab no no 0.876 0.789 0.383 1e-145
Q9LJX4 961 Pumilio homolog 5 OS=Arab no no 0.383 0.361 0.494 6e-90
Q9C5E7 861 Pumilio homolog 6, chloro no no 0.217 0.228 0.633 3e-83
P25822 1533 Maternal protein pumilio yes no 0.241 0.142 0.621 2e-79
Q14671 1186 Pumilio homolog 1 OS=Homo no no 0.241 0.183 0.607 1e-78
Q5R5X3 1186 Pumilio homolog 1 OS=Pong no no 0.241 0.183 0.607 2e-78
Q8TB72 1066 Pumilio homolog 2 OS=Homo yes no 0.241 0.204 0.615 2e-78
>sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1 Back     alignment and function desciption
 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/913 (51%), Positives = 596/913 (65%), Gaps = 133/913 (14%)

Query: 16  DYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSAPPTVEGSLSSIDGL- 74
           DY +++G L+ EQ+++Q            A +LE+ELN+FRSGSAPPTV+GS+S+  GL 
Sbjct: 22  DYEKEIGVLLGEQQRRQ----------VEADELERELNLFRSGSAPPTVDGSVSAAGGLF 71

Query: 75  ----------FKKLSDNKGGFLNEEELRADPAYVNYYYSNVNLNPRLPPPLLSKEDWRFT 124
                     F  ++   G   ++EE R DPAY++YYY+N+ LNPRLPPPL+S+ED R  
Sbjct: 72  SGGGGAPFLEFGGVNKGNGFGGDDEEFRKDPAYLSYYYANMKLNPRLPPPLMSREDLRVA 131

Query: 125 QRLRGGGEV-GGIGDRRK--GNGSLFAVQPGFGGKEEENSGGSGGGGEWGGDGLIGLPGL 181
           QRL+G   V GG+GDRRK   N SLF++ PGF G   E +G S    EW  +GLIGLPGL
Sbjct: 132 QRLKGSNNVLGGVGDRRKVNDNRSLFSMPPGFEG---EKTGASAS--EWDANGLIGLPGL 186

Query: 182 GLGSRQKSIAEIIQDDMSHGAPVSRHPSRPPSRNAFEDAIESSETQFAHLHHDLSSIDGL 241
           GLG +QKS A+I Q DM HG PV++ PSRP SRN F++ ++S+              + L
Sbjct: 187 GLGGKQKSFADIFQADMGHGHPVAQQPSRPASRNTFDENVDSN--------------NNL 232

Query: 242 GSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDPQLMARAPSPRIPTAGVGRASS 301
             SA       +Q IG  + +SYA+ LG+SLSR+ TPDPQ +AR PSP +   G GR SS
Sbjct: 233 SPSA-------SQGIGAPSPYSYAAVLGSSLSRNGTPDPQAIARVPSPCLTPIGSGRMSS 285

Query: 302 MDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTD-GVADQENNSRSQNQHEIDD-RH 359
            DKR  S   P NGV+  L +S+++V ALSGLNLS   G+ D     RSQ + +++  R+
Sbjct: 286 NDKRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSCSVGLDD-----RSQAEQDVEKVRN 340

Query: 360 SLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADG 419
            +F LQG    + QH F  +S+  H                                   
Sbjct: 341 YMFGLQGGHNEVNQHEFPNKSDQAH----------------------------------- 365

Query: 420 HKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLNGYSMNPSSPSMMGS 479
            K+  S  NS L+GP     NGG    + +Q + +      N+ LN Y++NP+  SMM +
Sbjct: 366 -KATGSLRNSQLRGPHGSAYNGGVGLANPYQQLDS-----PNYCLNNYALNPAVASMMAN 419

Query: 480 PIGSGNLPPLYENAAAASAMAGNGLDARTLAS--LGLGPNVMAAAAELQSMNRLGNHT-- 535
            +G+ N  P+Y+N    SA+  +G+D+R      +  G N+    +E +++ R  N    
Sbjct: 420 QLGNNNFAPMYDNV---SALGFSGMDSRHHGRGFVSSGQNL----SESRNLGRFSNRMMG 472

Query: 536 AGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDI----GNSYMDLLGLQKAYLGAL 591
            G+ LQ+ ++DP+Y QY       A  +  LNDP+MD     G+SYMD+L LQ+AYLGA 
Sbjct: 473 GGAGLQSHMVDPMYNQY-------ADSLDLLNDPSMDRNFMGGSSYMDMLELQRAYLGA- 524

Query: 592 LSPQKSQYGVPYLNKSGSLNNN-LYGNPAFGLGMSYPGGPL----LPNSPVGSGSPVRHG 646
              QKSQYGVPY  KSGS N++  YG+P FG  MSYPG PL    +PNS +   SP+R  
Sbjct: 525 ---QKSQYGVPY--KSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPMRRD 579

Query: 647 DRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVE 706
           + NMRFPS  RN SGG+MG WH +A  S DE F SS+L+EFKSNKT+ FELSEIAGHVVE
Sbjct: 580 EVNMRFPSATRNYSGGLMGSWHMDA--SFDEGFGSSMLEEFKSNKTRGFELSEIAGHVVE 637

Query: 707 FSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVR 766
           FS+DQYGSRFIQQKLETATT+EKNMV++EIMPQAL LMTDVFGNYVIQKFFEHG   Q R
Sbjct: 638 FSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKFFEHGLPPQRR 697

Query: 767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
           ELA++L  HVL LSLQMYGCRVIQKAIEVV+LDQ+ +MVKELDGH+MRCVRDQNGNHV+Q
Sbjct: 698 ELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQ 757

Query: 827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVC 886
           KCIECVPE+ I+FI+ TF+  VVTLSTHPYGCRVIQRVLEHCHD  TQS +M+EIL +V 
Sbjct: 758 KCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEEILSTVS 817

Query: 887 MLAQDQYGNYVVQ 899
           MLAQDQYGNYVVQ
Sbjct: 818 MLAQDQYGNYVVQ 830
Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. Binds the APUM-binding elements (APBEs) in the 3'-UTR mRNA sequence of CLV1, PNH, WUS and FAS2.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZW02|PUM3_ARATH Pumilio homolog 3 OS=Arabidopsis thaliana GN=APUM3 PE=1 SV=1 Back     alignment and function description
>sp|Q9SS47|PUM4_ARATH Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2 Back     alignment and function description
>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2 Back     alignment and function description
>sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana GN=APUM6 PE=1 SV=1 Back     alignment and function description
>sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2 Back     alignment and function description
>sp|Q14671|PUM1_HUMAN Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3 Back     alignment and function description
>sp|Q5R5X3|PUM1_PONAB Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1 Back     alignment and function description
>sp|Q8TB72|PUM2_HUMAN Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query904
359486781 1015 PREDICTED: pumilio homolog 1-like [Vitis 0.933 0.831 0.688 0.0
255566430 1011 pumilio, putative [Ricinus communis] gi| 0.919 0.821 0.683 0.0
255566432999 pumilio, putative [Ricinus communis] gi| 0.918 0.830 0.699 0.0
224098451999 predicted protein [Populus trichocarpa] 0.911 0.824 0.675 0.0
224112727938 predicted protein [Populus trichocarpa] 0.876 0.844 0.684 0.0
225434877 1065 PREDICTED: pumilio homolog 1-like [Vitis 0.963 0.817 0.642 0.0
147775244 1039 hypothetical protein VITISV_024967 [Viti 0.943 0.820 0.640 0.0
449459894 1016 PREDICTED: pumilio homolog 1-like [Cucum 0.928 0.825 0.620 0.0
224059464 1065 predicted protein [Populus trichocarpa] 0.961 0.815 0.598 0.0
357472855 1025 Pumilio-like protein [Medicago truncatul 0.918 0.809 0.591 0.0
>gi|359486781|ref|XP_002278108.2| PREDICTED: pumilio homolog 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1203 bits (3113), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/927 (68%), Positives = 729/927 (78%), Gaps = 83/927 (8%)

Query: 1   MMPDISIRSSMYKSPDYVEDLGKLIREQKQQQHLQEATQVNSASAADLEKELNIFRSGSA 60
           MM DI +RS M  + +Y EDLG LIREQ++Q+           +A+D EKEL+I+RSGSA
Sbjct: 9   MMSDIGMRS-MPGNAEYREDLGLLIREQRRQE----------VAASDREKELSIYRSGSA 57

Query: 61  PPTVEGSLSSIDGLFKKLSDNKGGFL-NEEELRADPAYVNYYYSNVNLNPRLPPPLLSKE 119
           PPTVEGSLS++ GLF    D       +EEELRADPAYVNYYYSNVNLNPRLPPP LSKE
Sbjct: 58  PPTVEGSLSAVGGLFGGGGDGSDTGFASEEELRADPAYVNYYYSNVNLNPRLPPPRLSKE 117

Query: 120 DWRFTQRLRGGGEVGGIG----------DRRK------GNGS-LFAVQPGFGGKEEENSG 162
           DWRF QRL GGG  GG            DRRK      GNGS LF +QPGF G+++EN  
Sbjct: 118 DWRFAQRLHGGGAGGGGSGSSSSVGGIGDRRKVGRGGDGNGSSLFLMQPGFNGQKDENGA 177

Query: 163 GS--GGGGEWGGDGLIGLPGLGLGSRQKSIAEIIQDDMSHGAPVSRHPSRPPSRNAFEDA 220
            S    G EWGGDGLIGLPGLGLGSRQKS+AEIIQDD+ H   VSRHPSRP SRNAF+D 
Sbjct: 178 ESRKAQGVEWGGDGLIGLPGLGLGSRQKSLAEIIQDDIGHATSVSRHPSRPASRNAFDDN 237

Query: 221 IESSETQFAHLHHDLSSIDGLGSSANKQGMPSAQSIGTSASHSYASALGASLSRSTTPDP 280
           +E+SE QF+HLHH+L+S+D L S    Q + + Q++ +SASH+YASALGASLSRSTTPDP
Sbjct: 238 VETSEAQFSHLHHELASMDALRSGTKIQAISAVQNVASSASHTYASALGASLSRSTTPDP 297

Query: 281 QLMARAPSPRIPTAGVGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGV 340
           QL+ARAPSPRIPT G GR SSMDKR+ +G    N V P + +SA++VAALSGLNLST+G+
Sbjct: 298 QLVARAPSPRIPTVGGGRTSSMDKRSGNGSNSFNSVPPGIGESADLVAALSGLNLSTNGM 357

Query: 341 ADQENNSRSQNQHEIDDRHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPN 400
            D EN+SRSQ QHEIDD  +LFNLQGD  H+K H +L +S S                  
Sbjct: 358 VDGENHSRSQIQHEIDDHKNLFNLQGDQNHIKHHSYLNKSAS------------------ 399

Query: 401 MGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFS 460
                                    S+NS+LKGP TPTL  GG+ PSH+Q + N+NS+FS
Sbjct: 400 -------------------------SANSFLKGPSTPTLTSGGSLPSHYQNVDNVNSSFS 434

Query: 461 NFSLNGYSMNPSSPSMMGSPIGSGNLPPLYENAAAASAMAGNGLDARTLAS-LGLGPNVM 519
           N+ L+GY+ NP+SPSMMGS  GSGN+PPL+EN AAASAM   G+D+R L   L LGPN+M
Sbjct: 435 NYGLSGYTFNPASPSMMGSQHGSGNMPPLFENVAAASAMGVTGMDSRALGGGLNLGPNLM 494

Query: 520 AAAAELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMD---IGNS 576
           AAA+ELQ++ R+GNHT G+ALQ P++DPLYLQYLRS EYAA Q  +LNDP MD   +G+S
Sbjct: 495 AAASELQNL-RVGNHTTGNALQVPVVDPLYLQYLRSAEYAATQGVALNDPTMDREYMGSS 553

Query: 577 YMDLLGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNNLYGNPAFGLGMSYPG----GPLL 632
           YMDLLGLQKAYLGALL+ QKSQYGVPYL KS S+N+  YGNP FGLGMSYPG    GPLL
Sbjct: 554 YMDLLGLQKAYLGALLTSQKSQYGVPYLGKSSSMNHGYYGNPQFGLGMSYPGSPLAGPLL 613

Query: 633 PNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKT 692
           PNSPVGSGSPVRH +RNMRFPSGMRNL+GGVMG WHSEAGG+LD++F SSLLDEFKSNKT
Sbjct: 614 PNSPVGSGSPVRHNERNMRFPSGMRNLAGGVMGAWHSEAGGNLDDNFVSSLLDEFKSNKT 673

Query: 693 KCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYV 752
           KCFELSEI+GHVVEFSADQYGSRFIQQKLETATTEEK+MVF EIMPQALSLMTDVFGNYV
Sbjct: 674 KCFELSEISGHVVEFSADQYGSRFIQQKLETATTEEKDMVFHEIMPQALSLMTDVFGNYV 733

Query: 753 IQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHI 812
           IQKFFEHGTASQ+RELADQLTGHVLTLSLQMYGCRVIQKAIEVV+LDQQT+MV ELDG++
Sbjct: 734 IQKFFEHGTASQIRELADQLTGHVLTLSLQMYGCRVIQKAIEVVDLDQQTKMVMELDGNV 793

Query: 813 MRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEK 872
           MRCVRDQNGNHVIQKCIEC+P+D+IQFI+ TFYDQVVTLSTHPYGCRVIQRVLEHCHD K
Sbjct: 794 MRCVRDQNGNHVIQKCIECIPQDSIQFIISTFYDQVVTLSTHPYGCRVIQRVLEHCHDPK 853

Query: 873 TQSIMMDEILQSVCMLAQDQYGNYVVQ 899
           TQ IMMDEILQSV MLAQDQYGNYVVQ
Sbjct: 854 TQRIMMDEILQSVRMLAQDQYGNYVVQ 880

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255566430|ref|XP_002524200.1| pumilio, putative [Ricinus communis] gi|223536477|gb|EEF38124.1| pumilio, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255566432|ref|XP_002524201.1| pumilio, putative [Ricinus communis] gi|223536478|gb|EEF38125.1| pumilio, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224098451|ref|XP_002311179.1| predicted protein [Populus trichocarpa] gi|222850999|gb|EEE88546.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224112727|ref|XP_002316273.1| predicted protein [Populus trichocarpa] gi|222865313|gb|EEF02444.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225434877|ref|XP_002283191.1| PREDICTED: pumilio homolog 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147775244|emb|CAN61602.1| hypothetical protein VITISV_024967 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449459894|ref|XP_004147681.1| PREDICTED: pumilio homolog 1-like [Cucumis sativus] gi|449503257|ref|XP_004161912.1| PREDICTED: pumilio homolog 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224059464|ref|XP_002299859.1| predicted protein [Populus trichocarpa] gi|222847117|gb|EEE84664.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357472855|ref|XP_003606712.1| Pumilio-like protein [Medicago truncatula] gi|355507767|gb|AES88909.1| Pumilio-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query904
TAIR|locus:2043182 968 PUM1 "pumilio 1" [Arabidopsis 0.501 0.467 0.578 1.3e-178
TAIR|locus:2043187 972 PUM2 "pumilio 2" [Arabidopsis 0.492 0.457 0.578 3.9e-175
TAIR|locus:2043047 964 PUM3 "pumilio 3" [Arabidopsis 0.630 0.591 0.486 3.3e-145
TAIR|locus:2076324 1003 PUM4 "pumilio 4" [Arabidopsis 0.378 0.340 0.568 1e-115
TAIR|locus:2087560 961 PUM5 "pumilio 5" [Arabidopsis 0.399 0.375 0.480 7.8e-94
TAIR|locus:2117552 861 PUM6 "pumilio 6" [Arabidopsis 0.326 0.342 0.517 3.2e-85
UNIPROTKB|B4DG92 1127 PUM1 "cDNA FLJ56067, highly si 0.241 0.193 0.607 2.3e-78
DICTYBASE|DDB_G0279735 785 pufA "RNA binding protein" [Di 0.240 0.276 0.611 1.5e-77
FB|FBgn0003165 1533 pum "pumilio" [Drosophila mela 0.309 0.182 0.521 1.5e-77
UNIPROTKB|E9PR38 944 PUM1 "Pumilio homolog 1" [Homo 0.241 0.230 0.607 1.9e-77
TAIR|locus:2043182 PUM1 "pumilio 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1332 (473.9 bits), Expect = 1.3e-178, Sum P(2) = 1.3e-178
 Identities = 285/493 (57%), Positives = 345/493 (69%)

Query:   420 HKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFSLXXXXXXXXXXXXXXX 479
             HK+  S  NS L+GP     NGG    + +Q + + N   +N++L               
Sbjct:   365 HKATGSLRNSQLRGPHGSAYNGGVGLANPYQQLDSPNYCLNNYALNPAVASMMANQLGNN 424

Query:   480 XXXXXXLPPLYENXXXXXXXXGNGLDARTLAS--LGLGPNVMAAAAELQSMNRLGNHT-- 535
                     P+Y+N         +G+D+R      +  G N+    +E +++ R  N    
Sbjct:   425 NFA-----PMYDNVSALGF---SGMDSRHHGRGFVSSGQNL----SESRNLGRFSNRMMG 472

Query:   536 AGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMDI----GNSYMDLLGLQKAYLGAL 591
              G+ LQ+ ++DP+Y QY  S +        LNDP+MD     G+SYMD+L LQ+AYLGA 
Sbjct:   473 GGAGLQSHMVDPMYNQYADSLDL-------LNDPSMDRNFMGGSSYMDMLELQRAYLGA- 524

Query:   592 LSPQKSQYGVPYLNKSGSLNNN-LYGNPAFGLGMSYPGGPL----LPNSPVGSGSPVRHG 646
                QKSQYGVPY  KSGS N++  YG+P FG  MSYPG PL    +PNS +   SP+R  
Sbjct:   525 ---QKSQYGVPY--KSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPMRRD 579

Query:   647 DRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCFELSEIAGHVVE 706
             + NMRFPS  RN SGG+MG WH +A  S DE F SS+L+EFKSNKT+ FELSEIAGHVVE
Sbjct:   580 EVNMRFPSATRNYSGGLMGSWHMDA--SFDEGFGSSMLEEFKSNKTRGFELSEIAGHVVE 637

Query:   707 FSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVR 766
             FS+DQYGSRFIQQKLETATT+EKNMV++EIMPQAL LMTDVFGNYVIQKFFEHG   Q R
Sbjct:   638 FSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKFFEHGLPPQRR 697

Query:   767 ELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826
             ELA++L  HVL LSLQMYGCRVIQKAIEVV+LDQ+ +MVKELDGH+MRCVRDQNGNHV+Q
Sbjct:   698 ELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQ 757

Query:   827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVC 886
             KCIECVPE+ I+FI+ TF+  VVTLSTHPYGCRVIQRVLEHCHD  TQS +M+EIL +V 
Sbjct:   758 KCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEEILSTVS 817

Query:   887 MLAQDQYGNYVVQ 899
             MLAQDQYGNYVVQ
Sbjct:   818 MLAQDQYGNYVVQ 830
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0003729 "mRNA binding" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
TAIR|locus:2043187 PUM2 "pumilio 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043047 PUM3 "pumilio 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076324 PUM4 "pumilio 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087560 PUM5 "pumilio 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117552 PUM6 "pumilio 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B4DG92 PUM1 "cDNA FLJ56067, highly similar to Pumilio homolog 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279735 pufA "RNA binding protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0003165 pum "pumilio" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E9PR38 PUM1 "Pumilio homolog 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZW07PUM1_ARATHNo assigned EC number0.51360.86280.8057yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00080519
hypothetical protein (999 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query904
pfam07990365 pfam07990, NABP, Nucleic acid binding protein NABP 1e-117
cd07920 322 cd07920, Pumilio, Pumilio-family RNA binding domai 1e-112
cd07920322 cd07920, Pumilio, Pumilio-family RNA binding domai 9e-71
COG5099 777 COG5099, COG5099, RNA-binding protein of the Puf f 4e-57
cd07920322 cd07920, Pumilio, Pumilio-family RNA binding domai 2e-30
COG5099777 COG5099, COG5099, RNA-binding protein of the Puf f 1e-13
COG5099777 COG5099, COG5099, RNA-binding protein of the Puf f 3e-13
COG5099 777 COG5099, COG5099, RNA-binding protein of the Puf f 7e-10
smart0002536 smart00025, Pumilio, Pumilio-like repeats 3e-07
smart0002536 smart00025, Pumilio, Pumilio-like repeats 5e-07
smart0002536 smart00025, Pumilio, Pumilio-like repeats 6e-07
smart0002536 smart00025, Pumilio, Pumilio-like repeats 6e-07
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 6e-07
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 7e-06
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 1e-05
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 5e-05
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 5e-05
smart0002536 smart00025, Pumilio, Pumilio-like repeats 7e-05
>gnl|CDD|219685 pfam07990, NABP, Nucleic acid binding protein NABP Back     alignment and domain information 
 Score =  362 bits (931), Expect = e-117
 Identities = 211/423 (49%), Positives = 264/423 (62%), Gaps = 67/423 (15%)

Query: 285 RAPSPRIPTAGVGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQE 344
           R PSP +P  GV R  S DK+   G    NGVS  L +SA++ AALSG+NLS  G  D E
Sbjct: 1   RVPSPCLPPIGV-RVGSNDKKNTGGSSSFNGVSSGLNESADLAAALSGMNLSGSGALDGE 59

Query: 345 NNSRSQNQHEIDD-RHSLFNLQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGK 403
           N+ +SQ + ++++ R+ LF LQG   +  QH F  +++ GHL     S S  GS      
Sbjct: 60  NHMQSQAEQDVENQRNYLFGLQGGQNNGNQHSFAKKADQGHLSAPEYSQSGNGSGSK--- 116

Query: 404 SGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGGNSPSHHQVMGNMNSAFSNFS 463
                                                              +NS   N+ 
Sbjct: 117 -------------------------------------------------DPINSPHLNYG 127

Query: 464 LNGYSMNPSSPSMMGSPIGSGNLPPLYENAAAASAMAGNGLDARTLASLGLGPNVMAAAA 523
           L GYS+NP+  SMM + +G+GN PP ++N+AA SAMA  G+D+R+L   GL  +     +
Sbjct: 128 LGGYSLNPAVASMMANQLGAGNFPP-FDNSAAGSAMASPGIDSRSLGG-GLSSSGNQGLS 185

Query: 524 ELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMD---IGNSYMDL 580
           + Q++NRLGN   GS LQ+PLMDP+YLQYLR+ EYAA   A+LNDP+MD   +G+SYMDL
Sbjct: 186 DSQNLNRLGNQMGGSGLQSPLMDPMYLQYLRAAEYAAQSAAALNDPSMDRNFLGSSYMDL 245

Query: 581 LGLQKAYLGALLSPQKSQYGVPYLNKSGSLNNN-LYGNPAFGLGMSYPGGPL----LPNS 635
           LGLQKAYLGALL+ QKSQYGVPY  KSGS NN+  YGNPAFG+GMSYPG PL    LP+S
Sbjct: 246 LGLQKAYLGALLAQQKSQYGVPY--KSGSPNNHGYYGNPAFGVGMSYPGSPLASPVLPSS 303

Query: 636 PVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLDESFASSLLDEFKSNKTKCF 695
           PVG GSP+R G+RNMRFPSGMRN  GGVMG WHS+AGGS+DE F SSLL+EFKSNKT+ F
Sbjct: 304 PVGPGSPLRRGERNMRFPSGMRNY-GGVMGSWHSDAGGSMDEGFGSSLLEEFKSNKTRSF 362

Query: 696 ELS 698
           ELS
Sbjct: 363 ELS 365

Many members of this family are putative nucleic acid binding proteins. One member of this family has been partially characterized and contains two putative phosphorylation sites and a possible dimerisation / leucine zipper domain. Length = 365
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 904
PF07990385 NABP: Nucleic acid binding protein NABP; InterPro: 100.0
KOG1488 503 consensus Translational repressor Pumilio/PUF3 and 100.0
KOG1488503 consensus Translational repressor Pumilio/PUF3 and 100.0
cd07920322 Pumilio Pumilio-family RNA binding domain. Puf rep 100.0
cd07920 322 Pumilio Pumilio-family RNA binding domain. Puf rep 100.0
COG5099 777 RNA-binding protein of the Puf family, translation 100.0
COG5099777 RNA-binding protein of the Puf family, translation 100.0
KOG2049536 consensus Translational repressor MPT5/PUF4 and re 100.0
KOG2049 536 consensus Translational repressor MPT5/PUF4 and re 99.98
KOG2050 652 consensus Puf family RNA-binding protein [Translat 99.9
KOG2188650 consensus Predicted RNA-binding protein, contains 99.74
KOG2050 652 consensus Puf family RNA-binding protein [Translat 99.62
KOG2188 650 consensus Predicted RNA-binding protein, contains 99.5
KOG4574 1007 consensus RNA-binding protein (contains RRM and Pu 99.32
KOG4574 1007 consensus RNA-binding protein (contains RRM and Pu 99.22
PF0080635 PUF: Pumilio-family RNA binding repeat; InterPro: 98.09
PF0080635 PUF: Pumilio-family RNA binding repeat; InterPro: 97.82
smart0002536 Pumilio Pumilio-like repeats. Pumilio-like repeats 97.67
smart0002536 Pumilio Pumilio-like repeats. Pumilio-like repeats 97.41
PF08144148 CPL: CPL (NUC119) domain; InterPro: IPR012959 This 85.83
PF08144148 CPL: CPL (NUC119) domain; InterPro: IPR012959 This 84.59
PF04286367 DUF445: Protein of unknown function (DUF445); Inte 84.38
PF11510263 FA_FANCE: Fanconi Anaemia group E protein FANCE; I 80.61
PF04286367 DUF445: Protein of unknown function (DUF445); Inte 80.18
>PF07990 NABP: Nucleic acid binding protein NABP; InterPro: IPR012940 This domain occurs in some putative nucleic acid binding proteins Back     alignment and domain information 
Probab=100.00  E-value=1.3e-89  Score=749.73  Aligned_cols=376  Identities=58%  Similarity=0.963  Sum_probs=363.7

Q ss_pred             cCCCCCCCCCCccccccCCCCCcCCCCCCCCCCCCCCChHHHHHHhcCCCCCCCCCCcccccccchhhhhhhhhcc-cCC
Q 002587          285 RAPSPRIPTAGVGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHS-LFN  363 (904)
Q Consensus       285 r~~s~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~ls~~~~~~~~~~~~~~~~~~~~~~~~-~~~  363 (904)
                      |+|||||||||+ |+.+.|||++.|+++||+++|+++|+|||+|||||||||+++++++|+|+|+|+|+|||||++ ||+
T Consensus         1 R~PSp~lpPIG~-Rv~s~eKk~~~g~~sfn~~SS~~~e~aDlvAALSGLNLS~~~~~~ee~~~qSqlqqdvdnqq~~lf~   79 (385)
T PF07990_consen    1 RAPSPCLPPIGV-RVGSVEKKNNGGSSSFNGVSSGINESADLVAALSGLNLSGNRAADEENHMQSQLQQDVDNQQDFLFN   79 (385)
T ss_pred             CCCCCCCCCccc-cccchhcccccCCcccccccCCCCcHHHHHHHHhcCCcCcCccccccccchHHHHHHHHHhhhhhhc
Confidence            899999999999 999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             CCCCccccccCccccCccccccccccccCCCCCCCCCCCCCCCccccccccccccccccccCCCCccCCCCCCCccCCCC
Q 002587          364 LQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGG  443 (904)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (904)
                      +|++|+|.+||.|+++++++|+++|                             ++++..+++.++|+|++.++.++.++
T Consensus        80 ~q~~q~~~~Qq~~~~~se~~~l~~~-----------------------------e~~~a~~~~~~s~~~~~~~s~~~~~g  130 (385)
T PF07990_consen   80 VQGGQNQGNQQSYMKKSESGHLNAP-----------------------------ELQKAAFPSGNSYFKNSNASKLSGGG  130 (385)
T ss_pred             CccchhhhhhHHHhhccchhhcccc-----------------------------ccccccCCCccccccCCCcccccCCC
Confidence            9999999999999999999999875                             56778888899999999999999999


Q ss_pred             CCCCCCccCCCCCCcCCCCCCCcccCCCCCCCCCCCCCCCCCCCccchhhHhhhhhcCCCCCccccccCCCCchhhhhhH
Q 002587          444 NSPSHHQVMGNMNSAFSNFSLNGYSMNPSSPSMMGSPIGSGNLPPLYENAAAASAMAGNGLDARTLASLGLGPNVMAAAA  523 (904)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (904)
                      ..+..||+++.++..+     +||++||++|+||.+++++|++|+|||+++++++++.+++++|++| +++.++++....
T Consensus       131 ~~~~~~q~~~~~n~~~-----~gy~~n~~~~s~~~~~~~~gn~p~~fd~~~~~s~~~~~~~~s~~~g-~~~~s~~~~~~~  204 (385)
T PF07990_consen  131 GSPFPYQNSDNPNSSF-----GGYALNPALPSMMASQLNNGNIPPLFDNSAAASALASPGMDSRSLG-GGLDSGGNQGAS  204 (385)
T ss_pred             CCCCcccCCCcccccc-----cccccCccchhhhhccccCCCCCccccccccchhhccCCCcccccC-Cccccccccccc
Confidence            9999999988877766     8999999999999999999999999999999999999999999999 899999887888


Q ss_pred             hhhhhcccccCCCCCCCCCCCCChHHHhhhccchHHHHHhhhcCCCCcc---cCCCccchhHHHHHhhhhcccccccccC
Q 002587          524 ELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMD---IGNSYMDLLGLQKAYLGALLSPQKSQYG  600 (904)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~q~~  600 (904)
                      |+++++|+|||+++.++|+||+||+|+||||+++|++++++++.||+++   +|++++||++.||+||++||++||+||+
T Consensus       205 d~~~l~r~gnq~~g~~lq~~~~DP~Y~Qylq~~~~aa~~~a~~~dP~~~R~~~G~s~~dl~~~qKayl~~lL~~QK~Qy~  284 (385)
T PF07990_consen  205 DGQNLNRFGNQVAGSALQSPFVDPLYLQYLQAPEYAAQQAAAQNDPSVDRNYMGSSYMDLLGLQKAYLEALLAQQKSQYG  284 (385)
T ss_pred             chhhhhhhcccccCcccCCCCCCchHHHHhccccchhhhhhccCCcccccCCcCccccchHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999997799999999999999999999999999999999998   9999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCCCCCcCCCCCCC----CCCCCCCCCCCCCcCCCCCCCCCCCccccCCCCCCCCcccCCCCCC
Q 002587          601 VPYLNKSGSLNNNLYGNPAFGLGMSYPGGP----LLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLD  676 (904)
Q Consensus       601 ~~~~~k~g~~~~~y~~~p~~g~~~~y~~~~----~~p~~~~~~~sp~~~~~rn~r~~s~~r~~~gg~~~~w~~d~~~~m~  676 (904)
                      +|+ .|+|.++++|||+|.||++|+|||+|    +||++|+|+++|++++||++||++++|++.||.+++||.|.+++|+
T Consensus       285 ~P~-~~~~~~n~~y~gnp~~G~gm~Y~gsplaspvlPsspvG~gsp~r~~er~~R~~s~mRn~~GG~~GsW~~d~g~~~d  363 (385)
T PF07990_consen  285 VPL-KKSGSMNHGYYGNPSYGLGMPYPGSPLASPVLPSSPVGPGSPLRHNERNMRFPSGMRNSSGGSMGSWHSDAGGNMD  363 (385)
T ss_pred             Ccc-ccCCCCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCcCCccccccCccccccccccccccccccccccc
Confidence            999 88888999999999999999999999    8999999999999999999999999999999999999999999999


Q ss_pred             chhhhHHHHHhhcCcccccHH
Q 002587          677 ESFASSLLDEFKSNKTKCFEL  697 (904)
Q Consensus       677 D~fgS~lLEef~snk~r~~~L  697 (904)
                      ++|++.||||||++|+|+|||
T Consensus       364 ~~~~sSlLEEFKsNKtr~FEL  384 (385)
T PF07990_consen  364 ENFASSLLEEFKSNKTRSFEL  384 (385)
T ss_pred             ccchhHHHHHHhcCCccceec
Confidence            999999999999999999987

One of these proteins has been partially characterised [] and contains two putative phosphorylation sites and a possible dimerisation / leucine zipper domain.
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07920 Pumilio Pumilio-family RNA binding domain Back     alignment and domain information
>cd07920 Pumilio Pumilio-family RNA binding domain Back     alignment and domain information
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only] Back     alignment and domain information
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only] Back     alignment and domain information
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains Back     alignment and domain information
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains Back     alignment and domain information
>smart00025 Pumilio Pumilio-like repeats Back     alignment and domain information
>smart00025 Pumilio Pumilio-like repeats Back     alignment and domain information
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [] Back     alignment and domain information
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [] Back     alignment and domain information
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function Back     alignment and domain information
>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair Back     alignment and domain information
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query904
3gvo_A 351 Structure And Rna Binding Of The Mouse Pumilio-2 Pu 2e-77
3h3d_X323 Drosophila Pumilio Rna Binding Domain (Puf Domain) 7e-77
1ib2_A 349 Crystal Structure Of A Pumilio-Homology Domain Leng 1e-76
3bsb_A 343 Crystal Structure Of Human Pumilio1 In Complex With 1e-76
3q0q_A 351 Crystal Structure Of The Pumilio-Homology Domain Fr 2e-76
3q0q_A 351 Crystal Structure Of The Pumilio-Homology Domain Fr 2e-08
2yjy_A 350 A Specific And Modular Binding Code For Cytosine Re 1e-75
3k49_A 369 Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr R 1e-54
3bx3_A 335 Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Re 3e-34
3bx3_A 335 Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Re 2e-10
4dzs_A 357 Crystal Structure Of Yeast Puf4p Rna Binding Domain 2e-32
4dzs_A 357 Crystal Structure Of Yeast Puf4p Rna Binding Domain 1e-09
3bx2_A 335 Puf4 Rna Binding Domain Bound To Ho Endonuclease Rn 8e-32
3bx2_A 335 Puf4 Rna Binding Domain Bound To Ho Endonuclease Rn 4e-09
3bwt_A 333 Crystal Structure Of The Rna Binding Domain Of Puf4 8e-32
3bwt_A 333 Crystal Structure Of The Rna Binding Domain Of Puf4 4e-09
3qg9_A 413 Crystal Structure Of Fbf-2GLD-1 Fbea A7u Mutant Com 7e-19
3k5q_A 412 Crystal Structure Of Fbf-2FBE COMPLEX Length = 412 8e-19
3qgb_A 413 Crystal Structure Of Fbf-2 R288y Mutant In Complex 5e-18
3v71_A 382 Crystal Structure Of Puf-6 In Complex With 5be13 Rn 1e-14
>pdb|3GVO|A Chain A, Structure And Rna Binding Of The Mouse Pumilio-2 Puf Domain Length = 351 Back     alignment and structure 
Iteration: 1

 Score =  287 bits (735), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 135/219 (61%), Positives = 170/219 (77%), Gaps = 1/219 (0%)
Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
           S LL++F++N+    +L ++ GH+VEFS DQ+GSRFIQQKLE AT  E+ +VF EI+  A
Sbjct: 5   SRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAA 64
Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
             LMTDVFGNYVIQKFFE G+  Q   LA ++ GHVL L+LQMYGCRVIQKA+E +  DQ
Sbjct: 65  YQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQ 124
Query: 801 QTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860
           Q++MVKELDGH+++CV+DQNGNHV+QKCIECV   ++QFI+  F  QV  LSTHPYGCRV
Sbjct: 125 QSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRV 184
Query: 861 IQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQ 899
           IQR+LEHC  E+T  I ++E+ Q    L QDQYGNYV+Q
Sbjct: 185 IQRILEHCTAEQTLPI-LEELHQHTEQLVQDQYGNYVIQ 222
>pdb|3H3D|X Chain X, Drosophila Pumilio Rna Binding Domain (Puf Domain) Length = 323 Back     alignment and structure
>pdb|1IB2|A Chain A, Crystal Structure Of A Pumilio-Homology Domain Length = 349 Back     alignment and structure
>pdb|3BSB|A Chain A, Crystal Structure Of Human Pumilio1 In Complex With Cyclinb Reverse Rna Length = 343 Back     alignment and structure
>pdb|3Q0Q|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From Human Pumilio2 In Complex With P38alpha Nrea Length = 351 Back     alignment and structure
>pdb|3Q0Q|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From Human Pumilio2 In Complex With P38alpha Nrea Length = 351 Back     alignment and structure
>pdb|2YJY|A Chain A, A Specific And Modular Binding Code For Cytosine Recognition In Puf Domains Length = 350 Back     alignment and structure
>pdb|3K49|A Chain A, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr Recognition Sequence Site B Length = 369 Back     alignment and structure
>pdb|3BX3|A Chain A, Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Recognition Sequence Length = 335 Back     alignment and structure
>pdb|3BX3|A Chain A, Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Recognition Sequence Length = 335 Back     alignment and structure
>pdb|4DZS|A Chain A, Crystal Structure Of Yeast Puf4p Rna Binding Domain In Complex With Ho-4be Mutant Rna Length = 357 Back     alignment and structure
>pdb|4DZS|A Chain A, Crystal Structure Of Yeast Puf4p Rna Binding Domain In Complex With Ho-4be Mutant Rna Length = 357 Back     alignment and structure
>pdb|3BX2|A Chain A, Puf4 Rna Binding Domain Bound To Ho Endonuclease Rna 3' Utr Recognition Sequence Length = 335 Back     alignment and structure
>pdb|3BX2|A Chain A, Puf4 Rna Binding Domain Bound To Ho Endonuclease Rna 3' Utr Recognition Sequence Length = 335 Back     alignment and structure
>pdb|3BWT|A Chain A, Crystal Structure Of The Rna Binding Domain Of Puf4 From Saccharomyces Cerevisiae Length = 333 Back     alignment and structure
>pdb|3BWT|A Chain A, Crystal Structure Of The Rna Binding Domain Of Puf4 From Saccharomyces Cerevisiae Length = 333 Back     alignment and structure
>pdb|3QG9|A Chain A, Crystal Structure Of Fbf-2GLD-1 Fbea A7u Mutant Complex Length = 413 Back     alignment and structure
>pdb|3K5Q|A Chain A, Crystal Structure Of Fbf-2FBE COMPLEX Length = 412 Back     alignment and structure
>pdb|3QGB|A Chain A, Crystal Structure Of Fbf-2 R288y Mutant In Complex With Gld-1 Fbea Length = 413 Back     alignment and structure
>pdb|3V71|A Chain A, Crystal Structure Of Puf-6 In Complex With 5be13 Rna Length = 382 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query904
3gvo_A 351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 1e-113
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 3e-58
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 2e-47
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 1e-40
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 3e-23
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 2e-07
3k49_A 369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 1e-109
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 6e-56
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 2e-40
3k49_A 369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 2e-12
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 9e-05
3bwt_A 333 Protein PUF4; pumilio, RNA binding, HO endonucleas 4e-99
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 1e-55
3bwt_A 333 Protein PUF4; pumilio, RNA binding, HO endonucleas 2e-37
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 2e-36
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 5e-35
3v71_A 382 PUF (pumilio/FBF) domain-containing protein 7, CO 1e-83
3v71_A 382 PUF (pumilio/FBF) domain-containing protein 7, CO 8e-38
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 8e-31
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 1e-26
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 4e-16
3v71_A 382 PUF (pumilio/FBF) domain-containing protein 7, CO 1e-11
3k62_A 412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 9e-78
3k62_A 412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 2e-33
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 2e-30
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 2e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
 Score =  349 bits (897), Expect = e-113
 Identities = 135/222 (60%), Positives = 170/222 (76%), Gaps = 1/222 (0%)

Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
           S LL++F++N+    +L ++ GH+VEFS DQ+GSRFIQQKLE AT  E+ +VF EI+  A
Sbjct: 5   SRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAA 64

Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
             LMTDVFGNYVIQKFFE G+  Q   LA ++ GHVL L+LQMYGCRVIQKA+E +  DQ
Sbjct: 65  YQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQ 124

Query: 801 QTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860
           Q++MVKELDGH+++CV+DQNGNHV+QKCIECV   ++QFI+  F  QV  LSTHPYGCRV
Sbjct: 125 QSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRV 184

Query: 861 IQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQVCF 902
           IQR+LEHC  E+T  I ++E+ Q    L QDQYGNYV+Q   
Sbjct: 185 IQRILEHCTAEQTLPI-LEELHQHTEQLVQDQYGNYVIQHVL 225
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 904
d1m8za_ 339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 1e-79
d1m8za_339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 3e-39
d1m8za_339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 1e-30
d1m8za_339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 1e-29
d1m8za_339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 2e-15
d1m8za_339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 6e-05
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Pumilio repeat
domain: Pumilio 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  259 bits (662), Expect = 1e-79
 Identities = 132/222 (59%), Positives = 170/222 (76%), Gaps = 1/222 (0%)

Query: 681 SSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA 740
           S LL++F++N+    +L EIAGH++EFS DQ+GSRFIQ KLE AT  E+ +VF EI+  A
Sbjct: 3   SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 62

Query: 741 LSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQ 800
             LM DVFGNYVIQKFFE G+  Q   LA+++ GHVL+L+LQMYGCRVIQKA+E +  DQ
Sbjct: 63  YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 122

Query: 801 QTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860
           Q +MV+ELDGH+++CV+DQNGNHV+QKCIECV   ++QFI+  F  QV  LSTHPYGCRV
Sbjct: 123 QNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 182

Query: 861 IQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQVCF 902
           IQR+LEHC  ++T   +++E+ Q    L QDQYGNYV+Q   
Sbjct: 183 IQRILEHCLPDQTL-PILEELHQHTEQLVQDQYGNYVIQHVL 223
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query904
d1m8za_ 339 Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1m8za_339 Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Pumilio repeat
domain: Pumilio 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-43  Score=312.52  Aligned_cols=223  Identities=59%  Similarity=0.990  Sum_probs=188.1

Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             56799973137331207999999999985085528999998511999999999999999699853066623379899730
Q 002587          680 ASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEH  759 (904)
Q Consensus       680 gS~lLEef~sne~r~liLeeIkG~IveLA~Dq~GSRVIQKlLE~aS~Eer~~IfeEI~p~i~~Ls~D~fGNyVIQKLLE~  759 (904)
                      +|+++++|++++.+.+++++++|+++++|+||+|||+||++|+.++++++..||+++.+++.+||+|+||||||||+|++
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~q~gSr~lQ~~l~~~~~~~~~~I~~~l~~~~~~L~~~~~gn~vvqkll~~   81 (339)
T d1m8za_           2 RSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEF   81 (339)
T ss_dssp             CCHHHHHHHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHH
T ss_pred             CCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             74476886637889973999981899981495123999999801999999999999998799986083204069999964


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHH
Q ss_conf             79988999999999989997303444377876655115688999999999999998508776088879650289457999
Q 002587          760 GTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQF  839 (904)
Q Consensus       760 ~s~eqr~~Lie~L~g~Iv~LS~dkyGsrVIQKLLE~~~~eqk~~IVeeL~~~il~La~DqnGNhVIQkiLE~~p~e~r~~  839 (904)
                      ++++++..|++.+.+++.+|+.|+|||+|||+++++...+++..++.+|.+++..+++|++|+||+|+||++.+++.+++
T Consensus        82 ~~~~~~~~i~~~l~~~~~~L~~~~~gs~Vvq~l~~~~~~~~~~~l~~el~~~~~~l~~d~~~~~v~~~~l~~~~~~~~~~  161 (339)
T d1m8za_          82 GSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF  161 (339)
T ss_dssp             SCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHHHSCGGGGHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
T ss_conf             88999999999988659998501233167886541388799999999974205777408775568999998469999999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf             9999999799982092146999999941696889999999999989977409444589887118
Q 002587          840 IVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQVCFG  903 (904)
Q Consensus       840 IIe~Ll~~lveLSthKYGSrVIQkiLe~c~d~~~kk~IieEIl~nl~~LaqDqYGNYVVQkILE  903 (904)
                      |++.+.+++..+++|+|||+|+|++++.++. ..+..+++++..++..|++|+|||||||++|+
T Consensus       162 i~~~~~~~~~~l~~~~~g~~vlq~~l~~~~~-~~~~~l~~~l~~~~~~L~~~~~G~~vvq~~l~  224 (339)
T d1m8za_         162 IIDAFKGQVFALSTHPYGCRVIQRILEHCLP-DQTLPILEELHQHTEQLVQDQYGNYVIQHVLE  224 (339)
T ss_dssp             HHHHTTTTHHHHHTSTTHHHHHHHHHHHSCH-HHHHHHHHHHHHTHHHHTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9999998899998276111999998860899-89988999999999999717608999999997
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure