Citrus Sinensis ID: 002588
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 904 | ||||||
| 255563667 | 1210 | conserved hypothetical protein [Ricinus | 0.990 | 0.739 | 0.753 | 0.0 | |
| 359493954 | 1215 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.738 | 0.750 | 0.0 | |
| 356543944 | 1217 | PREDICTED: uncharacterized protein LOC10 | 0.997 | 0.741 | 0.694 | 0.0 | |
| 356543166 | 1213 | PREDICTED: uncharacterized protein LOC10 | 0.990 | 0.737 | 0.695 | 0.0 | |
| 449470413 | 1203 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.743 | 0.691 | 0.0 | |
| 356549825 | 1216 | PREDICTED: uncharacterized protein LOC10 | 0.994 | 0.739 | 0.700 | 0.0 | |
| 302143215 | 1146 | unnamed protein product [Vitis vinifera] | 0.915 | 0.722 | 0.712 | 0.0 | |
| 334185500 | 1199 | uncharacterized protein [Arabidopsis tha | 0.964 | 0.727 | 0.701 | 0.0 | |
| 356543942 | 1199 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.735 | 0.682 | 0.0 | |
| 297830766 | 1199 | hypothetical protein ARALYDRAFT_318821 [ | 0.963 | 0.726 | 0.696 | 0.0 |
| >gi|255563667|ref|XP_002522835.1| conserved hypothetical protein [Ricinus communis] gi|223537919|gb|EEF39533.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1368 bits (3540), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 679/901 (75%), Positives = 772/901 (85%), Gaps = 6/901 (0%)
Query: 1 MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAK 60
ME+I+ARALEYT KYWLKSFSRDQFKLQGRT QLSNLDINGDALHASMGLPPAL+VT AK
Sbjct: 1 MEAILARALEYTLKYWLKSFSRDQFKLQGRTVQLSNLDINGDALHASMGLPPALNVTKAK 60
Query: 61 LGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKDACNYASSTPTPTGSSKGSGYGF 120
+GK EIILP VSNVQ+EPIV+Q+D+LDLVLEEN D DAC+ ST + TGS+K SGYGF
Sbjct: 61 VGKFEIILPY-VSNVQVEPIVVQIDKLDLVLEENNDLDACSSTHSTQSSTGSTKASGYGF 119
Query: 121 ADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLK 180
ADKIADGMT+QV+TVNLLL TRGGA+R+GGA+W P+A+ITIRNL+L TTNENWQVVNLK
Sbjct: 120 ADKIADGMTIQVSTVNLLLETRGGARREGGAAWASPLAAITIRNLLLYTTNENWQVVNLK 179
Query: 181 EARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRAFFG 240
EARDFS NK FIYVFKKLEWE+LS+DLLPHPDMFAD S+ARS EG++ RD+DGAKR FFG
Sbjct: 180 EARDFSNNKGFIYVFKKLEWESLSIDLLPHPDMFADASLARSQEGSTQRDDDGAKRVFFG 239
Query: 241 GERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCL 300
GERF+EGIS +A+IT+QRTE N+PLGLEVQLH+TEAVCPALSEPGLRALLRFL+GLYVCL
Sbjct: 240 GERFLEGISGEAHITMQRTEQNNPLGLEVQLHITEAVCPALSEPGLRALLRFLTGLYVCL 299
Query: 301 NRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETA 360
NR DVDL QQ STEAAGRSLVS++VDHIF CIKDA+FQLELLMQSL FSRATVSDGE
Sbjct: 300 NRGDVDLKAQQRSTEAAGRSLVSLLVDHIFFCIKDADFQLELLMQSLLFSRATVSDGEIV 359
Query: 361 SNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQI 420
+NLT + V GLFLRDTFSRPP TLVQPS++ V+E+ + IP FAK+FCP I PLGDQQ+Q+
Sbjct: 360 NNLTTVMVGGLFLRDTFSRPPCTLVQPSIENVTENCLEIPAFAKNFCPPIHPLGDQQFQL 419
Query: 421 NKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGA 480
+ G+PLICLH+LQVKPSP PPSFAS TVI+CQPLMIHLQEESCLRISSFLADGI+VN G
Sbjct: 420 SAGIPLICLHSLQVKPSPLPPSFASETVIACQPLMIHLQEESCLRISSFLADGIVVNPGD 479
Query: 481 VLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPS 540
VLPD SVNSL F L++LD+TVPLDM+ DN A +N T SSF GARLHI+ LFFSESPS
Sbjct: 480 VLPDFSVNSLMFILKELDVTVPLDMSNSDNQAYNKNNTVQSSFTGARLHIENLFFSESPS 539
Query: 541 LKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNSN---SGL 597
LKLRLL LEKDPACFC+WE QP+DASQ+KWT GASHLSLSLET S G +S+ SGL
Sbjct: 540 LKLRLLKLEKDPACFCMWEGQPVDASQKKWTTGASHLSLSLETSISSAGQLSSHGLTSGL 599
Query: 598 WKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTY 657
W+CVELKDA IEVAMV+ADG PLT+VPPPGGVVR+GVACQQYLSNTSV+QLFFVLD+Y Y
Sbjct: 600 WRCVELKDASIEVAMVTADGGPLTIVPPPGGVVRVGVACQQYLSNTSVDQLFFVLDLYAY 659
Query: 658 FGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEG 717
FGRV EKI VGKNK S +LM+ P DTAVSLAVK LQLRFLE S++NIEG
Sbjct: 660 FGRVGEKIASVGKNKRTESRNESSDDGRLMDKVPCDTAVSLAVKGLQLRFLESSTINIEG 719
Query: 718 MPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESC 777
MPLVQF+G +FIKV HRTLGGA+AVSST+LW+SV+VDCV+TE L HE + P E+
Sbjct: 720 MPLVQFIGNGLFIKVAHRTLGGAIAVSSTLLWQSVQVDCVETEGRLAHEYSTVSTPIENG 779
Query: 778 PQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSAC 837
NGYPQLRAVFWVH KH+ N A +PFLD+++VHVIP SE D+ECHSLS+SAC
Sbjct: 780 LATT-NGYPQLRAVFWVHNHQKHQPNGLACTIPFLDINIVHVIPFSERDKECHSLSVSAC 838
Query: 838 ISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKASPLSVEDVG 897
ISG+RLGGGMNYAEALLHRFGILGPDGGPGEGL+KG+++LS GPLSKLFK S L V D+G
Sbjct: 839 ISGIRLGGGMNYAEALLHRFGILGPDGGPGEGLTKGLKNLSRGPLSKLFKTSHLRV-DLG 897
Query: 898 E 898
E
Sbjct: 898 E 898
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493954|ref|XP_003634700.1| PREDICTED: uncharacterized protein LOC100241773 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356543944|ref|XP_003540418.1| PREDICTED: uncharacterized protein LOC100811661 isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356543166|ref|XP_003540034.1| PREDICTED: uncharacterized protein LOC100782617 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449470413|ref|XP_004152911.1| PREDICTED: uncharacterized protein LOC101210396 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356549825|ref|XP_003543291.1| PREDICTED: uncharacterized protein LOC100803142 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|302143215|emb|CBI20510.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|334185500|ref|NP_001189943.1| uncharacterized protein [Arabidopsis thaliana] gi|29824401|gb|AAP04160.1| unknown protein [Arabidopsis thaliana] gi|110737203|dbj|BAF00550.1| hypothetical protein [Arabidopsis thaliana] gi|332642895|gb|AEE76416.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|356543942|ref|XP_003540417.1| PREDICTED: uncharacterized protein LOC100811661 isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|297830766|ref|XP_002883265.1| hypothetical protein ARALYDRAFT_318821 [Arabidopsis lyrata subsp. lyrata] gi|297329105|gb|EFH59524.1| hypothetical protein ARALYDRAFT_318821 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
No hits with e-value below 0.001 by BLAST
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| fgenesh1_pm.C_scaffold_3001837 | annotation not avaliable (1199 aa) | |||||||
(Arabidopsis lyrata) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 904 | |||
| pfam12624 | 117 | pfam12624, Chorein_N, N-terminal region of Chorein | 1e-04 |
| >gnl|CDD|204985 pfam12624, Chorein_N, N-terminal region of Chorein, a TM vesicle-mediated sorter | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 22/99 (22%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 2 ESIIARALEYTFKYWLKSFSRDQFKLQ--GRTAQLSNLDINGDALHASMGLPPALHVTTA 59
ES++A L ++++ ++Q + +L NL + DAL + LP + V +
Sbjct: 2 ESLVADLLNRYLGEYVENLDKEQLSVSIWSGDVELENLRLKKDAL-DKLDLP--IEVKSG 58
Query: 60 KLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKD 98
+GKL + +P ++ EP+V+ +D + ++ + +
Sbjct: 59 HIGKLTLKIP--WKSLGSEPVVITIDDVYILASPKDNDE 95
|
Although mutations in the full-length vacuolar protein sorting 13A (VPS13A) protein in vertebrates lead to the disease of chorea-acanthocytosis, the exact function of any of the regions within the protein is not yet known. This region is the proposed leucine zipper at the N-terminus. The full-length protein is a transmembrane protein with a presumed role in vesicle-mediated sorting and intracellular protein transport. Length = 117 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 904 | |||
| KOG2955 | 1069 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| COG5043 | 2552 | MRS6 Vacuolar protein sorting-associated protein [ | 100.0 | |
| KOG1809 | 1827 | consensus Vacuolar protein sorting-associated prot | 100.0 | |
| PF12624 | 118 | Chorein_N: N-terminal region of Chorein, a TM vesi | 99.81 |
| >KOG2955 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-165 Score=1380.99 Aligned_cols=749 Identities=54% Similarity=0.821 Sum_probs=710.7
Q ss_pred ChhHHHHHHHHHHhHhhcCCCccCcee---ecCeEEeeccccchhhhhhhcCCCCeeEEeEEEeeeEEEEcCcccccccc
Q 002588 1 MESIIARALEYTFKYWLKSFSRDQFKL---QGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQI 77 (904)
Q Consensus 1 MESLVa~lLnr~LgkYVKNLdpDQLnL---sGGdVeL~NLELKedALde~L~LP~~L~V~~G~~GkLtLkIP~SWTNLKs 77 (904)
|||||+++|.++|++|+|||+|||||| +| +++|+|||||+|||++.|+||+||.|++++||++.+.|| |||||+
T Consensus 1 M~sIIk~ql~khLs~ftKnltpdqi~L~~lKG-~~qL~nleineevL~~~L~LP~wL~I~~afc~k~~I~lP--wtklkT 77 (1069)
T KOG2955|consen 1 MESIIKRQLEKHLSYFTKNLTPDQIKLQGLKG-TAQLSNLEINEEVLHASLGLPPWLSITTAFCGKLEIMLP--WTKLKT 77 (1069)
T ss_pred CchHHHHHHHHHHHHHHhcCChhhEeeeeccc-cceecceecCHHHHHHhhcCCchheeeeeeecceEEecc--chhccc
Confidence 999999999999999999999999999 45 999999999999999999999999999999999999999 999999
Q ss_pred ccEEEEeccEEEEeccCCCccccccCCCCCCCCCCCCCCCCchHHHhhcCeEEEEEEEEEEEEecCCcccCCCCCCCCcE
Q 002588 78 EPIVLQVDRLDLVLEENPDKDACNYASSTPTPTGSSKGSGYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPM 157 (904)
Q Consensus 78 kPV~I~ID~IyLvlep~s~~e~~r~~~~ss~~ass~~~~~ygFvtKIIDNLQV~InnIHIRYED~~~~~t~~g~~~~PFs 157 (904)
+||+|.||+|.++++++.+.+.. ++.++......+++|||++||++||.++|+.|.|+++..+ |+
T Consensus 78 ~PI~v~iDkl~l~le~~~e~~~~---~gpsp~~tas~~S~YGFa~KI~egmSl~V~sV~I~~~t~~------------f~ 142 (1069)
T KOG2955|consen 78 EPIVVQIDKLDLVLEENPEADVT---KGPSPSPTASAKSNYGFADKIAEGMSLQVKSVNILLETGG------------FA 142 (1069)
T ss_pred cceEEEeeeeeEEeecCccccCC---CCCCCCCCcccccccchHHHHhcCceEEEEEEEEEeecCc------------cc
Confidence 99999999999988877665443 3333333334556799999999999999999999999975 57
Q ss_pred EEEEEeeeEEEecCCCceeeccccccccccCCceeEEEEEEEecceeeeeccCCcccccccccccccCCCCCCCCCCcee
Q 002588 158 ASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRA 237 (904)
Q Consensus 158 aGITLseLSaqSTDenWqpsdL~~tR~~~~~k~~ilIFKlLsLesLSIY~~p~~dlfsd~~~~~s~~~iss~~~~~P~Ry 237 (904)
++++|++|+++|||+.|+.++|++||+++++.+.+++||+++|+.|+|++++++.|- ..... -..|.|+
T Consensus 143 aSf~L~~L~lyS~n~~W~~vdLR~tRi~~t~tg~il~FK~l~W~~lrIea~a~~s~~-e~~~~----------~~ap~rL 211 (1069)
T KOG2955|consen 143 ASFTLRNLVLYSTNESWKVVDLRETRIFSTNTGFILLFKKLEWEALRIEALAHPSMT-EANLA----------RSAPARL 211 (1069)
T ss_pred eeEEEeeeEEEecCCCceeeeeeeeeeccCCCceEEEeeccceeeeeeeccCCCchh-hHHHh----------hcCceee
Confidence 899999999999999999999999999999999999999999999999998887762 22111 1478999
Q ss_pred ecCCceeeeeeeeEEEEEEcccCCCCCccceeeeeeccccccccCHHHHHHHHHHHHHHHHhhccCCCCccccccchhhc
Q 002588 238 FFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAA 317 (904)
Q Consensus 238 If~~qyILkPISG~ArLtmNK~e~ds~~~~kvqlli~DEL~~~Lsd~QYrdlL~fl~SL~~~~~R~~~~~~~qq~~~~~~ 317 (904)
|++. |..|||++|+..|+++...++++|+|+++|+||++|+|++++|+++++.|++|+++++|+||
T Consensus 212 it~~--------gkiRItlkr~~~d~~vi~~~~~~IlddvlwvlT~pqLra~l~fat~m~~~l~~s~~~~ks~~------ 277 (1069)
T KOG2955|consen 212 ITED--------GKIRITLKRTALDSPVILEVQLHILDDVLWVLTEPQLRALLRFATGMYLCLNRSDVDPKSQQ------ 277 (1069)
T ss_pred eccC--------CeEEEEEeeeccCCchhhHhHHhhhHhHHHhcccHHHHHHHHHHHHHHHHHhhhccCccCcC------
Confidence 8885 99999999999999988878888999999999999999999999999999999999999999
Q ss_pred cCceeEEEeeeEEEeeechhHHHHHHhhhcccceeeeccccccccccceeeeeeeeeccCCCCCceeeccccccccccCC
Q 002588 318 GRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLV 397 (904)
Q Consensus 318 ~~~~v~~~vd~ifl~ikd~~f~~e~l~~~~~~~ra~~~~~~~~~~l~~i~i~glflrd~f~~ppc~lvqpsm~~~~~~~~ 397 (904)
|+|+++++.+.++.|++||+|+||.||+-||.+.||+|.+.... +
T Consensus 278 ----------------------------------~~vs~t~san~~~~~~~~g~~a~d~~s~i~~a~n~f~~k~tS~h-L 322 (1069)
T KOG2955|consen 278 ----------------------------------ACVSDTESANYLTKILIGGLFARDAFSRIPCALNQFSMKATSEH-L 322 (1069)
T ss_pred ----------------------------------ceeeccccccccceeeecccccchhhhhchhhhcccchhhhhhc-c
Confidence 99999999999999999999999999999999999999976555 9
Q ss_pred CcchhhhccCCccccCCcccceeecCcceEEEeecccccCCCCCCccccceeeccceEEEecccchhhhhhhccCceeec
Q 002588 398 LIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVN 477 (904)
Q Consensus 398 ~vp~fa~~~~p~i~p~~~~~~~~~~~~pl~cl~~~q~~psp~pp~~as~tvi~cqpl~i~lqe~sclri~sfladgiv~~ 477 (904)
+||+|+.+|||-|||+++..|+..-+.|.+-||++|++|+|-||+||+.||++|+|+|.|+|||.|+|+++|+|+|||||
T Consensus 323 ~I~~~dlh~Cddih~~~~~p~~~~i~~gamql~~~Qv~id~yP~h~a~~t~~~wm~~s~~~~~~a~~rn~l~~~f~~~v~ 402 (1069)
T KOG2955|consen 323 AIPDFDLHFCDDIHPLDSGPWQIVIDVGAMQLHSLQVKIDPYPPHFASKTVIQWMPLSVHLQEEACLRNSLFLAFGIVVN 402 (1069)
T ss_pred ccccchhhccccccccccCCCceEeccceeEEEEEEeecCcCChhhcccchhheeehhhcchHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCccceEEEEeeceeeeeecCccccchhhhccCccccCCcccceEEeeceeeccCccccceecccCCCCceeec
Q 002588 478 HGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCL 557 (904)
Q Consensus 478 ~~~~lpd~s~~s~~f~lk~~d~tvp~d~~~~~~~~~~~~~~~~~~f~garlhie~l~~~~sp~l~~~~l~l~~dpacf~~ 557 (904)
||+++||-+.||+.|++|++||.+|+++..+...+...+.+.+.+|.|||+||||+.|++||.+|.|++|+|+|||||++
T Consensus 403 p~~~~~~~~t~s~l~~~~~~~l~~~~vv~rl~D~~I~~vss~~~~~~~~~~~ie~~~~~~slp~~~~~v~lEf~~~y~p~ 482 (1069)
T KOG2955|consen 403 PGDVLPDNSTNSLLFTLKELDLSVPLVVSRLQDSAIEEVSSVKKSFVGARLHIENLSFAESLPLKVRLVNLEFDPAYFPL 482 (1069)
T ss_pred CccccCCCccchhHhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhhhccCcccceEEEEecccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccccccccccceEEEEEeecCCCCcccC---CCCceeEeecccceEEEEEEecCCCcceecCCCCcEEEEee
Q 002588 558 WEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNS---NSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGV 634 (904)
Q Consensus 558 w~~qp~dasq~kw~~~as~~~l~let~~~~~~~~~~---~~~lw~cvel~d~~~e~am~t~dg~pl~~vpppggivr~gv 634 (904)
|+||||++||++|+++|+|+|+..+|..-.+..|.+ +.|+|.|+|-+|..+|+|||.|||.||..||||||+||+|+
T Consensus 483 ~~~~PIp~s~~y~qlga~~fS~derT~~w~~q~~~~l~~~m~~~~~~~gn~vs~e~~dV~~dg~~l~~V~P~~v~~~~~~ 562 (1069)
T KOG2955|consen 483 WPGQPIPASQKYWQLGASHFSLDERTSPWSTQLQSPLGPEMGLWNCVEGNDVSIEVADVSADGKPLITVPPPGVIVRIGV 562 (1069)
T ss_pred CCCCcCCchhhheecCceEEEeecccchhhhhhhcccchhhchheeccCCccchheeeecCCCeeEEEecCccceeeccc
Confidence 999999999999999999999999999999999877 89999999999999999999999999999999999999999
Q ss_pred eeeccccccceeehhhHHHHhhhhchhhhhhhhhcCcccccccCCccccccccccCCCcceEEEeeccceeeeeccccCC
Q 002588 635 ACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMN 714 (904)
Q Consensus 635 ~~~~~~sn~s~eql~fvl~ly~y~g~v~e~~~~~~~~~~~~~~~~~~~~~~l~~~~p~dtav~l~~~~l~~~fle~~~~~ 714 (904)
+|++|.+-+++||+|||+|+|+|||+++|+|+.+++.||. +.-+.++++.++||+||||.|..|+||.+||+++-+.
T Consensus 563 ~c~l~~~f~df~~~~f~~~~yS~f~kss~~i~~~~~~~r~---~~~s~tt~~he~vk~~~~~~Lnk~~l~t~~~s~~wi~ 639 (1069)
T KOG2955|consen 563 ACELYISFADFEQLFFVLDLYSYFGKSSEKISIVKESKRQ---NTVSLTTGLHEKVKSDTAVKLNKKDLQTKFLSSSWIS 639 (1069)
T ss_pred ccccccchhhhhHHHHHHHHHhhccccccceeeechhhhh---hhhhcccchhhhccccchhhhhhhhhhhhhcccceee
Confidence 9999999999999999999999999999999999999999 8889999999999999999999999999999999999
Q ss_pred cCCCceeEEecCceeEEEeccccceeEEEeeeeeeeEEEEeeeeCCCCccccCCCcCCCCCCC-CccCCCCCCcceEEEE
Q 002588 715 IEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESC-PQDIGNGYPQLRAVFW 793 (904)
Q Consensus 715 ~~~~plvqf~g~~~~~~~thrtlgga~~vss~l~w~~v~v~cv~~e~~~~~e~~~~~~~~~~~-~~~~~~g~p~lr~vfw 793 (904)
++|||++|+.+.|+..++||||++||++||++++||.++++||++..++.+||++ ++ ..+..+|.-.+|.+||
T Consensus 640 ~~~mp~~kg~p~~~~vsf~~~~~i~~~~~~~ni~~Ep~e~~~V~~d~~q~~~~s~------~Gdk~~k~l~~~~l~~~~~ 713 (1069)
T KOG2955|consen 640 TQDMPLVKGLPKDLSVSFTHRTLIGAIAVSSNIYWEPIEVDCVDTDVEQEHENSW------NGDKLVKCLGSTPLRRVFW 713 (1069)
T ss_pred ccCCccccCcccceeeeecceEEeccccchhheeecccccceEecchhhhhhccc------cchhHHhhcccCccceeee
Confidence 9999999999999999999999999999999999999999999999999999998 45 6677889889999999
Q ss_pred EecCCcccccCCcCCCCeeeeeeeEEeeCCCCCccccceeeEEE
Q 002588 794 VHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSAC 837 (904)
Q Consensus 794 v~~~~~~~~~~~~~~~pfldi~~~~~ip~~~~d~e~hsl~v~a~ 837 (904)
+.|+++....+...+ ||+||+++||||+.|.|+||||.+++|-
T Consensus 714 ~tNg~~~~~S~dtl~-~f~~is~~~vi~l~e~~~~~~S~~i~~y 756 (1069)
T KOG2955|consen 714 VTNGRHDEHSGDTLT-PFLDISITHVIPLSEKDMECHSVSIVAY 756 (1069)
T ss_pred ecCCCCCCcccccee-ecccceeEEEeehhhcccccceeeehhc
Confidence 999988877777654 9999999999999999999999999985
|
|
| >COG5043 MRS6 Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1809 consensus Vacuolar protein sorting-associated protein [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 904 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 2e-06
Identities = 94/631 (14%), Positives = 176/631 (27%), Gaps = 193/631 (30%)
Query: 206 DLLPH--PDMFAD----------GSIARSNE-----GASHRDEDGAKRAFF--------G 240
D+L + SI E + G R F+
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS-GTLRLFWTLLSKQEEM 78
Query: 241 GERFIEGISAQAY---ITVQRTELNSPLGLEV-------QLHVTEAVCPALS----EP-- 284
++F+E + Y ++ +TE P + +L+ V + +P
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 285 GLR-ALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRS-LVSIVV----------DHIF-- 330
LR ALL V ++ +G++ + V IF
Sbjct: 139 KLRQALLELRPAKNVLID-----------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 331 ---LCIKDAEFQLELLMQSLF--FSRATVSDGETASNLT-KITVAGLFLRDTFSRP--PS 382
C E LE+L Q L S + +SN+ +I LR +
Sbjct: 188 NLKNC-NSPETVLEML-QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 383 TLVQPSMQAVSEDLVL----IPDFAKDF---CPVI-------------------CPLGDQ 416
L LVL F C ++ L
Sbjct: 246 CL-----------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 417 QWQINKGVPL-ICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGIL 475
+ + L L +P P V++ P + + I+ + DG
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPRE-----VLTTNPRRLSI-------IAESIRDG-- 340
Query: 476 VNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLD-NHARQRNLTAHSSFAGARLHIKKLF 534
+ N + L + +N L+ R+ F +L
Sbjct: 341 -------LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-------F-------DRLS 379
Query: 535 -FSES---PSLKLRLLHLEKDPACFCLWEDQPIDAS--QRKWTAGASHL-SLSLETCTSI 587
F S P++ L L+ + + + ++ S +++ + S+ LE +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 588 TGSQNSNSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQY-------- 639
L + ++ + ++PP QY
Sbjct: 440 ENEY----------ALHRSIVDHYNIPKTFDSDDLIPPY---------LDQYFYSHIGHH 480
Query: 640 LSNTSVEQLFFVL-DIYTYFGRVSEKIVRVGKNKSAMKSGNESLG-VKLMEN--APNDTA 695
L N + + ++ F + +KI +A S +L +K + ND
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 696 VSLAVKDLQLRFL---EPSSMNIEGMPLVQF 723
V + L FL E + + + L++
Sbjct: 541 YERLVNAI-LDFLPKIEENLICSKYTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00