Citrus Sinensis ID: 002588


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900----
MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKDACNYASSTPTPTGSSKGSGYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNSNSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESCPQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKASPLSVEDVGEGMEQIV
cHHHHHHHHHHHHHHHHcccccccEEEEccEEEEEcccccHHHHHHHccccccEEEEEEEEEEEEEEEcccccccccccEEEEEcEEEEcccccccccccccccccccccccccccccccHHHcccccEEEEEEEEEEEEEcccccccccccccccEEEEEEEEEEEEEcccccEEEccccEEcccccccEEEEEEEEEEcEEEEEcccccccccccHHcccccccccccccccccccccccEEEEEccEEEEEEEEEEcccccccEEEEEEEccccccccccHHHHHHHHHHHHHEEEEccccccccccccHHHHccccEEEEEEEEEEEEEEccHHHHHHHHHHHccEEEEEccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccEEEcccEEEEEccccHHHHHHHccccEEEccccccccccccEEEEEEEcEEEEEEccccccccccccccccccccccccEEEEEcEEEccccccccccccccccccEEEccccccccccccccccccccEEEEEEEEcccccccccccccEEEEEccccEEEEEEEEccccccEEccccccEEEEEEEEEcccccccEEEHHHHHHHHHHccccEEEEEHHccccccccccccccccccccccccccEEEEEEcccEEEEccccccccccccEEEEEcccEEEEEEcccccEEEEEEEEEEEEEEEEEEEEccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccEEEEEEEEEEEccccccccccEEEEEEEEEEEEcccHHHHHHHHHHHccccccccccccHHHHHcccccccccccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHcccHcHEEccccEEEEEcccccHHHHHHHcccccHEEEEEEEEcEEEEEEEEEEEEcccccEEEEEEEEEEEEEEccccccccccccccccccccccccccHHHHHEccEEEEEEEEEEEEEEcccccccccccccccEEEEEEEEEEEEEccccccEccccEEEEEcccccEEEEEEEEEEEEEEEEcccccccccHHHccccccccccccccccEEEEEcccHHHcccccEEEEEEEEccccccccEEEEEEccHccccccccHHHHHHHHHHccEEEEEccccccHHHHHHHHHHccccEEEEEEEEEEEEEccHHHHHHHHHHHHHHcccEcccccccccccEEEEEHHHHHHHccccccEEEcccccccccccccccHHHHHccccccccccccEEEcccccEEEEEEEEEccccccccccccEEEEccccEEEEcHHHHHHHHHHHHccEEEccccccccccHHEEEEEEccccEEEEccHHHccccccccccccccccccEEEEEEcEEEccccccEEEEEcccccccEEEEcccccccccHHHHHHHccHHEEEEEEccccccccccccccEEEEEccccEEEEEEEEccccccccccccccEEEEEEEHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHccccccHHcccccccHcHHHHcccccEEEEEEHHcEEEEccccccccccccEEEEEcccEEEEEEEcccccEEEEEcEEEEEEEEEEEEccccccccccccEEcccccccccccccccccEEEEEEEcccccccccccccccEEEEEEEEEEEcccccccccEEEEEEEEEcEEcccHHHHHHHHHHHHccccccccccccHHHHHHHcccccHHHHccccccEEccccccccHcc
MESIIARALEYTFKYWLKSFSRDQFKLQGrtaqlsnldingdalhasmglppalhvTTAKLGKleiilpssvsnvqiepivLQVDRLDlvleenpdkdacnyasstptptgsskgsgygfadkiadgmtlQVNTVNLLLVTrggaqrdggaswtppmasiTIRNLVLCTTNENWQVVNLKeardfslnkKFIYVFKKLEWETLsvdllphpdmfadgsiarsnegashrdedgakraffggerfieGISAQAYITVQRTelnsplglevQLHVTEAvcpalsepGLRALLRFLSGLYvclnrddvdlttqqlsteAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFsratvsdgetasnLTKITVAGLflrdtfsrppstlvqpsmqavSEDLVlipdfakdfcpvicplgdqqwqinkgvpliclhtlqvkpspappsfasrtviscqplmihLQEESCLRISSFLADgilvnhgavlpdssvnsLAFYledlditvpldmnkldnharqrnltahssfaGARLHIKKLffsespslkLRLLHlekdpacfclwedqpidasqrkwtagASHLSLSLETCtsitgsqnsnsglwKCVELKDACIEVAMvsadgkpltvvpppggvvRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKlmenapndtaVSLAVKDLQlrflepssmniegmplvqfvgedMFIKVTHRTLGGAVAVSSTILWESvevdcvdteenlphengillppsescpqdigngypqLRAVFWVHkkgkhrlndsayampfldmsmvhviplsegdrechsLSLSACIsgvrlgggMNYAEALLHRFgilgpdggpgeglskgiehlsegplsklfkasplsvedvgegmeqiv
MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILpssvsnvqiepiVLQVDRLDLVLEENpdkdacnyasstptptgsskgSGYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNlkeardfslnKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARsnegashrdedGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRAtvsdgetasnltKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSItgsqnsnsgLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIvrvgknksamksgNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESCPQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEgplsklfkasplsvedvgegmeqiv
MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKDACNYAsstptptgsskgsgYGFADKIADGMtlqvntvnlllvtRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNSNSGLWKCVELKDACIEVAMVSADgkpltvvpppggvvrigvACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESCPQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFgilgpdggpgeglskgIEHLSEGPLSKLFKASPLSVEDVGEGMEQIV
***IIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLE*************************YGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMF*********************RAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSR****LV***MQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVK*******FASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNSNSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVG*************************AVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLP****CPQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILG*******************************************
MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLV*********************************IADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDM************************FFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLN*********************SIVVDHIFLCIKDAEFQLELLMQSLFFSRA*V***ETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNK*************SSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLS*****************WKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVS**************************NAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHE*G**************NGYPQLRAVFWVHKKGK******AYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKASPLS************
MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKDACNYA************SGYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIAR**********DGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNSNSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESCPQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKASPL*************
*ESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPD********************GYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSI************DGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLST*AAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLD****QRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSIT****SNSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVG***************KLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESCPQDIGNGYPQLRAVFWVHKKGK****DSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKASPLSVED*********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKDACNYASSTPTPTGSSKGSGYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNSNSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESCPQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKASPLSVEDVGEGMEQIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query904 2.2.26 [Sep-21-2011]
Q6BDS2 1440 UHRF1-binding protein 1 O yes no 0.209 0.131 0.235 3e-09
A2RSJ4 1457 UHRF1-binding protein 1-l no no 0.209 0.129 0.240 5e-09
Q6NRZ1 1415 UHRF1-binding protein 1-l N/A no 0.209 0.133 0.235 5e-09
A0JNW5 1464 UHRF1-binding protein 1-l no no 0.207 0.128 0.229 1e-07
>sp|Q6BDS2|URFB1_HUMAN UHRF1-binding protein 1 OS=Homo sapiens GN=UHRF1BP1 PE=1 SV=1 Back     alignment and function desciption
 Score = 64.7 bits (156), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 96/208 (46%), Gaps = 19/208 (9%)

Query: 1   MESIIARALEYTFKYWLKSFSRDQFKLQGRTA--QLSNLDINGDALHASMGLPPALHVTT 58
           M  II + +      + K+ S D+  L       QL+NL+++ + L   + LP  L +T 
Sbjct: 1   MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGQLTNLELDEEVLQNVLELPTWLAITR 60

Query: 59  AKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKDACNYASSTPTPTGSSKGSGY 118
               +  I +    + ++  PI L +D++++ ++   D    N  S     +G S+   Y
Sbjct: 61  VYCNRASIRI--QWTKLKTHPICLCLDKVEVEMKTCEDPRPPNGQSPIALASGQSE---Y 115

Query: 119 GFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVN 178
           GFA+K+ +GM + VN++ + + ++               AS  +  L   + N NWQ  +
Sbjct: 116 GFAEKVVEGMFIIVNSITIKIHSKAF------------HASFELWQLQGYSVNPNWQQSD 163

Query: 179 LKEARDFSLNKKFIYVFKKLEWETLSVD 206
           L+  R     +  +  FK++ W+TL ++
Sbjct: 164 LRLTRITDPCRGEVLTFKEITWQTLRIE 191




May act as a negative regulator of cell growth.
Homo sapiens (taxid: 9606)
>sp|A2RSJ4|UH1BL_MOUSE UHRF1-binding protein 1-like OS=Mus musculus GN=Uhrf1bp1l PE=2 SV=2 Back     alignment and function description
>sp|Q6NRZ1|UH1BL_XENLA UHRF1-binding protein 1-like OS=Xenopus laevis GN=uhrf1bp1l PE=2 SV=1 Back     alignment and function description
>sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens GN=UHRF1BP1L PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query904
255563667 1210 conserved hypothetical protein [Ricinus 0.990 0.739 0.753 0.0
359493954 1215 PREDICTED: uncharacterized protein LOC10 0.992 0.738 0.750 0.0
356543944 1217 PREDICTED: uncharacterized protein LOC10 0.997 0.741 0.694 0.0
356543166 1213 PREDICTED: uncharacterized protein LOC10 0.990 0.737 0.695 0.0
449470413 1203 PREDICTED: uncharacterized protein LOC10 0.988 0.743 0.691 0.0
356549825 1216 PREDICTED: uncharacterized protein LOC10 0.994 0.739 0.700 0.0
302143215 1146 unnamed protein product [Vitis vinifera] 0.915 0.722 0.712 0.0
334185500 1199 uncharacterized protein [Arabidopsis tha 0.964 0.727 0.701 0.0
356543942 1199 PREDICTED: uncharacterized protein LOC10 0.975 0.735 0.682 0.0
297830766 1199 hypothetical protein ARALYDRAFT_318821 [ 0.963 0.726 0.696 0.0
>gi|255563667|ref|XP_002522835.1| conserved hypothetical protein [Ricinus communis] gi|223537919|gb|EEF39533.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1368 bits (3540), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 679/901 (75%), Positives = 772/901 (85%), Gaps = 6/901 (0%)

Query: 1   MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAK 60
           ME+I+ARALEYT KYWLKSFSRDQFKLQGRT QLSNLDINGDALHASMGLPPAL+VT AK
Sbjct: 1   MEAILARALEYTLKYWLKSFSRDQFKLQGRTVQLSNLDINGDALHASMGLPPALNVTKAK 60

Query: 61  LGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKDACNYASSTPTPTGSSKGSGYGF 120
           +GK EIILP  VSNVQ+EPIV+Q+D+LDLVLEEN D DAC+   ST + TGS+K SGYGF
Sbjct: 61  VGKFEIILPY-VSNVQVEPIVVQIDKLDLVLEENNDLDACSSTHSTQSSTGSTKASGYGF 119

Query: 121 ADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLK 180
           ADKIADGMT+QV+TVNLLL TRGGA+R+GGA+W  P+A+ITIRNL+L TTNENWQVVNLK
Sbjct: 120 ADKIADGMTIQVSTVNLLLETRGGARREGGAAWASPLAAITIRNLLLYTTNENWQVVNLK 179

Query: 181 EARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRAFFG 240
           EARDFS NK FIYVFKKLEWE+LS+DLLPHPDMFAD S+ARS EG++ RD+DGAKR FFG
Sbjct: 180 EARDFSNNKGFIYVFKKLEWESLSIDLLPHPDMFADASLARSQEGSTQRDDDGAKRVFFG 239

Query: 241 GERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCL 300
           GERF+EGIS +A+IT+QRTE N+PLGLEVQLH+TEAVCPALSEPGLRALLRFL+GLYVCL
Sbjct: 240 GERFLEGISGEAHITMQRTEQNNPLGLEVQLHITEAVCPALSEPGLRALLRFLTGLYVCL 299

Query: 301 NRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETA 360
           NR DVDL  QQ STEAAGRSLVS++VDHIF CIKDA+FQLELLMQSL FSRATVSDGE  
Sbjct: 300 NRGDVDLKAQQRSTEAAGRSLVSLLVDHIFFCIKDADFQLELLMQSLLFSRATVSDGEIV 359

Query: 361 SNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQI 420
           +NLT + V GLFLRDTFSRPP TLVQPS++ V+E+ + IP FAK+FCP I PLGDQQ+Q+
Sbjct: 360 NNLTTVMVGGLFLRDTFSRPPCTLVQPSIENVTENCLEIPAFAKNFCPPIHPLGDQQFQL 419

Query: 421 NKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGA 480
           + G+PLICLH+LQVKPSP PPSFAS TVI+CQPLMIHLQEESCLRISSFLADGI+VN G 
Sbjct: 420 SAGIPLICLHSLQVKPSPLPPSFASETVIACQPLMIHLQEESCLRISSFLADGIVVNPGD 479

Query: 481 VLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPS 540
           VLPD SVNSL F L++LD+TVPLDM+  DN A  +N T  SSF GARLHI+ LFFSESPS
Sbjct: 480 VLPDFSVNSLMFILKELDVTVPLDMSNSDNQAYNKNNTVQSSFTGARLHIENLFFSESPS 539

Query: 541 LKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNSN---SGL 597
           LKLRLL LEKDPACFC+WE QP+DASQ+KWT GASHLSLSLET  S  G  +S+   SGL
Sbjct: 540 LKLRLLKLEKDPACFCMWEGQPVDASQKKWTTGASHLSLSLETSISSAGQLSSHGLTSGL 599

Query: 598 WKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTY 657
           W+CVELKDA IEVAMV+ADG PLT+VPPPGGVVR+GVACQQYLSNTSV+QLFFVLD+Y Y
Sbjct: 600 WRCVELKDASIEVAMVTADGGPLTIVPPPGGVVRVGVACQQYLSNTSVDQLFFVLDLYAY 659

Query: 658 FGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEG 717
           FGRV EKI  VGKNK        S   +LM+  P DTAVSLAVK LQLRFLE S++NIEG
Sbjct: 660 FGRVGEKIASVGKNKRTESRNESSDDGRLMDKVPCDTAVSLAVKGLQLRFLESSTINIEG 719

Query: 718 MPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESC 777
           MPLVQF+G  +FIKV HRTLGGA+AVSST+LW+SV+VDCV+TE  L HE   +  P E+ 
Sbjct: 720 MPLVQFIGNGLFIKVAHRTLGGAIAVSSTLLWQSVQVDCVETEGRLAHEYSTVSTPIENG 779

Query: 778 PQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSAC 837
                NGYPQLRAVFWVH   KH+ N  A  +PFLD+++VHVIP SE D+ECHSLS+SAC
Sbjct: 780 LATT-NGYPQLRAVFWVHNHQKHQPNGLACTIPFLDINIVHVIPFSERDKECHSLSVSAC 838

Query: 838 ISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKASPLSVEDVG 897
           ISG+RLGGGMNYAEALLHRFGILGPDGGPGEGL+KG+++LS GPLSKLFK S L V D+G
Sbjct: 839 ISGIRLGGGMNYAEALLHRFGILGPDGGPGEGLTKGLKNLSRGPLSKLFKTSHLRV-DLG 897

Query: 898 E 898
           E
Sbjct: 898 E 898




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493954|ref|XP_003634700.1| PREDICTED: uncharacterized protein LOC100241773 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356543944|ref|XP_003540418.1| PREDICTED: uncharacterized protein LOC100811661 isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356543166|ref|XP_003540034.1| PREDICTED: uncharacterized protein LOC100782617 [Glycine max] Back     alignment and taxonomy information
>gi|449470413|ref|XP_004152911.1| PREDICTED: uncharacterized protein LOC101210396 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356549825|ref|XP_003543291.1| PREDICTED: uncharacterized protein LOC100803142 [Glycine max] Back     alignment and taxonomy information
>gi|302143215|emb|CBI20510.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|334185500|ref|NP_001189943.1| uncharacterized protein [Arabidopsis thaliana] gi|29824401|gb|AAP04160.1| unknown protein [Arabidopsis thaliana] gi|110737203|dbj|BAF00550.1| hypothetical protein [Arabidopsis thaliana] gi|332642895|gb|AEE76416.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356543942|ref|XP_003540417.1| PREDICTED: uncharacterized protein LOC100811661 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|297830766|ref|XP_002883265.1| hypothetical protein ARALYDRAFT_318821 [Arabidopsis lyrata subsp. lyrata] gi|297329105|gb|EFH59524.1| hypothetical protein ARALYDRAFT_318821 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

No hits with e-value below 0.001 by BLAST


Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
fgenesh1_pm.C_scaffold_3001837
annotation not avaliable (1199 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query904
pfam12624117 pfam12624, Chorein_N, N-terminal region of Chorein 1e-04
>gnl|CDD|204985 pfam12624, Chorein_N, N-terminal region of Chorein, a TM vesicle-mediated sorter Back     alignment and domain information
 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 22/99 (22%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 2  ESIIARALEYTFKYWLKSFSRDQFKLQ--GRTAQLSNLDINGDALHASMGLPPALHVTTA 59
          ES++A  L      ++++  ++Q  +       +L NL +  DAL   + LP  + V + 
Sbjct: 2  ESLVADLLNRYLGEYVENLDKEQLSVSIWSGDVELENLRLKKDAL-DKLDLP--IEVKSG 58

Query: 60 KLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKD 98
           +GKL + +P    ++  EP+V+ +D + ++     + +
Sbjct: 59 HIGKLTLKIP--WKSLGSEPVVITIDDVYILASPKDNDE 95


Although mutations in the full-length vacuolar protein sorting 13A (VPS13A) protein in vertebrates lead to the disease of chorea-acanthocytosis, the exact function of any of the regions within the protein is not yet known. This region is the proposed leucine zipper at the N-terminus. The full-length protein is a transmembrane protein with a presumed role in vesicle-mediated sorting and intracellular protein transport. Length = 117

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 904
KOG2955 1069 consensus Uncharacterized conserved protein [Funct 100.0
COG5043 2552 MRS6 Vacuolar protein sorting-associated protein [ 100.0
KOG1809 1827 consensus Vacuolar protein sorting-associated prot 100.0
PF12624118 Chorein_N: N-terminal region of Chorein, a TM vesi 99.81
>KOG2955 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
Probab=100.00  E-value=1.9e-165  Score=1380.99  Aligned_cols=749  Identities=54%  Similarity=0.821  Sum_probs=710.7

Q ss_pred             ChhHHHHHHHHHHhHhhcCCCccCcee---ecCeEEeeccccchhhhhhhcCCCCeeEEeEEEeeeEEEEcCcccccccc
Q 002588            1 MESIIARALEYTFKYWLKSFSRDQFKL---QGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQI   77 (904)
Q Consensus         1 MESLVa~lLnr~LgkYVKNLdpDQLnL---sGGdVeL~NLELKedALde~L~LP~~L~V~~G~~GkLtLkIP~SWTNLKs   77 (904)
                      |||||+++|.++|++|+|||+||||||   +| +++|+|||||+|||++.|+||+||.|++++||++.+.||  |||||+
T Consensus         1 M~sIIk~ql~khLs~ftKnltpdqi~L~~lKG-~~qL~nleineevL~~~L~LP~wL~I~~afc~k~~I~lP--wtklkT   77 (1069)
T KOG2955|consen    1 MESIIKRQLEKHLSYFTKNLTPDQIKLQGLKG-TAQLSNLEINEEVLHASLGLPPWLSITTAFCGKLEIMLP--WTKLKT   77 (1069)
T ss_pred             CchHHHHHHHHHHHHHHhcCChhhEeeeeccc-cceecceecCHHHHHHhhcCCchheeeeeeecceEEecc--chhccc
Confidence            999999999999999999999999999   45 999999999999999999999999999999999999999  999999


Q ss_pred             ccEEEEeccEEEEeccCCCccccccCCCCCCCCCCCCCCCCchHHHhhcCeEEEEEEEEEEEEecCCcccCCCCCCCCcE
Q 002588           78 EPIVLQVDRLDLVLEENPDKDACNYASSTPTPTGSSKGSGYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPM  157 (904)
Q Consensus        78 kPV~I~ID~IyLvlep~s~~e~~r~~~~ss~~ass~~~~~ygFvtKIIDNLQV~InnIHIRYED~~~~~t~~g~~~~PFs  157 (904)
                      +||+|.||+|.++++++.+.+..   ++.++......+++|||++||++||.++|+.|.|+++..+            |+
T Consensus        78 ~PI~v~iDkl~l~le~~~e~~~~---~gpsp~~tas~~S~YGFa~KI~egmSl~V~sV~I~~~t~~------------f~  142 (1069)
T KOG2955|consen   78 EPIVVQIDKLDLVLEENPEADVT---KGPSPSPTASAKSNYGFADKIAEGMSLQVKSVNILLETGG------------FA  142 (1069)
T ss_pred             cceEEEeeeeeEEeecCccccCC---CCCCCCCCcccccccchHHHHhcCceEEEEEEEEEeecCc------------cc
Confidence            99999999999988877665443   3333333334556799999999999999999999999975            57


Q ss_pred             EEEEEeeeEEEecCCCceeeccccccccccCCceeEEEEEEEecceeeeeccCCcccccccccccccCCCCCCCCCCcee
Q 002588          158 ASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRA  237 (904)
Q Consensus       158 aGITLseLSaqSTDenWqpsdL~~tR~~~~~k~~ilIFKlLsLesLSIY~~p~~dlfsd~~~~~s~~~iss~~~~~P~Ry  237 (904)
                      ++++|++|+++|||+.|+.++|++||+++++.+.+++||+++|+.|+|++++++.|- .....          -..|.|+
T Consensus       143 aSf~L~~L~lyS~n~~W~~vdLR~tRi~~t~tg~il~FK~l~W~~lrIea~a~~s~~-e~~~~----------~~ap~rL  211 (1069)
T KOG2955|consen  143 ASFTLRNLVLYSTNESWKVVDLRETRIFSTNTGFILLFKKLEWEALRIEALAHPSMT-EANLA----------RSAPARL  211 (1069)
T ss_pred             eeEEEeeeEEEecCCCceeeeeeeeeeccCCCceEEEeeccceeeeeeeccCCCchh-hHHHh----------hcCceee
Confidence            899999999999999999999999999999999999999999999999998887762 22111          1478999


Q ss_pred             ecCCceeeeeeeeEEEEEEcccCCCCCccceeeeeeccccccccCHHHHHHHHHHHHHHHHhhccCCCCccccccchhhc
Q 002588          238 FFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAA  317 (904)
Q Consensus       238 If~~qyILkPISG~ArLtmNK~e~ds~~~~kvqlli~DEL~~~Lsd~QYrdlL~fl~SL~~~~~R~~~~~~~qq~~~~~~  317 (904)
                      |++.        |..|||++|+..|+++...++++|+|+++|+||++|+|++++|+++++.|++|+++++|+||      
T Consensus       212 it~~--------gkiRItlkr~~~d~~vi~~~~~~IlddvlwvlT~pqLra~l~fat~m~~~l~~s~~~~ks~~------  277 (1069)
T KOG2955|consen  212 ITED--------GKIRITLKRTALDSPVILEVQLHILDDVLWVLTEPQLRALLRFATGMYLCLNRSDVDPKSQQ------  277 (1069)
T ss_pred             eccC--------CeEEEEEeeeccCCchhhHhHHhhhHhHHHhcccHHHHHHHHHHHHHHHHHhhhccCccCcC------
Confidence            8885        99999999999999988878888999999999999999999999999999999999999999      


Q ss_pred             cCceeEEEeeeEEEeeechhHHHHHHhhhcccceeeeccccccccccceeeeeeeeeccCCCCCceeeccccccccccCC
Q 002588          318 GRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLV  397 (904)
Q Consensus       318 ~~~~v~~~vd~ifl~ikd~~f~~e~l~~~~~~~ra~~~~~~~~~~l~~i~i~glflrd~f~~ppc~lvqpsm~~~~~~~~  397 (904)
                                                        |+|+++++.+.++.|++||+|+||.||+-||.+.||+|.+.... +
T Consensus       278 ----------------------------------~~vs~t~san~~~~~~~~g~~a~d~~s~i~~a~n~f~~k~tS~h-L  322 (1069)
T KOG2955|consen  278 ----------------------------------ACVSDTESANYLTKILIGGLFARDAFSRIPCALNQFSMKATSEH-L  322 (1069)
T ss_pred             ----------------------------------ceeeccccccccceeeecccccchhhhhchhhhcccchhhhhhc-c
Confidence                                              99999999999999999999999999999999999999976555 9


Q ss_pred             CcchhhhccCCccccCCcccceeecCcceEEEeecccccCCCCCCccccceeeccceEEEecccchhhhhhhccCceeec
Q 002588          398 LIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVN  477 (904)
Q Consensus       398 ~vp~fa~~~~p~i~p~~~~~~~~~~~~pl~cl~~~q~~psp~pp~~as~tvi~cqpl~i~lqe~sclri~sfladgiv~~  477 (904)
                      +||+|+.+|||-|||+++..|+..-+.|.+-||++|++|+|-||+||+.||++|+|+|.|+|||.|+|+++|+|+|||||
T Consensus       323 ~I~~~dlh~Cddih~~~~~p~~~~i~~gamql~~~Qv~id~yP~h~a~~t~~~wm~~s~~~~~~a~~rn~l~~~f~~~v~  402 (1069)
T KOG2955|consen  323 AIPDFDLHFCDDIHPLDSGPWQIVIDVGAMQLHSLQVKIDPYPPHFASKTVIQWMPLSVHLQEEACLRNSLFLAFGIVVN  402 (1069)
T ss_pred             ccccchhhccccccccccCCCceEeccceeEEEEEEeecCcCChhhcccchhheeehhhcchHHHHHHHHHHHhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCccceEEEEeeceeeeeecCccccchhhhccCccccCCcccceEEeeceeeccCccccceecccCCCCceeec
Q 002588          478 HGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCL  557 (904)
Q Consensus       478 ~~~~lpd~s~~s~~f~lk~~d~tvp~d~~~~~~~~~~~~~~~~~~f~garlhie~l~~~~sp~l~~~~l~l~~dpacf~~  557 (904)
                      ||+++||-+.||+.|++|++||.+|+++..+...+...+.+.+.+|.|||+||||+.|++||.+|.|++|+|+|||||++
T Consensus       403 p~~~~~~~~t~s~l~~~~~~~l~~~~vv~rl~D~~I~~vss~~~~~~~~~~~ie~~~~~~slp~~~~~v~lEf~~~y~p~  482 (1069)
T KOG2955|consen  403 PGDVLPDNSTNSLLFTLKELDLSVPLVVSRLQDSAIEEVSSVKKSFVGARLHIENLSFAESLPLKVRLVNLEFDPAYFPL  482 (1069)
T ss_pred             CccccCCCccchhHhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhhhccCcccceEEEEecccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccccccccccccceEEEEEeecCCCCcccC---CCCceeEeecccceEEEEEEecCCCcceecCCCCcEEEEee
Q 002588          558 WEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNS---NSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGV  634 (904)
Q Consensus       558 w~~qp~dasq~kw~~~as~~~l~let~~~~~~~~~~---~~~lw~cvel~d~~~e~am~t~dg~pl~~vpppggivr~gv  634 (904)
                      |+||||++||++|+++|+|+|+..+|..-.+..|.+   +.|+|.|+|-+|..+|+|||.|||.||..||||||+||+|+
T Consensus       483 ~~~~PIp~s~~y~qlga~~fS~derT~~w~~q~~~~l~~~m~~~~~~~gn~vs~e~~dV~~dg~~l~~V~P~~v~~~~~~  562 (1069)
T KOG2955|consen  483 WPGQPIPASQKYWQLGASHFSLDERTSPWSTQLQSPLGPEMGLWNCVEGNDVSIEVADVSADGKPLITVPPPGVIVRIGV  562 (1069)
T ss_pred             CCCCcCCchhhheecCceEEEeecccchhhhhhhcccchhhchheeccCCccchheeeecCCCeeEEEecCccceeeccc
Confidence            999999999999999999999999999999999877   89999999999999999999999999999999999999999


Q ss_pred             eeeccccccceeehhhHHHHhhhhchhhhhhhhhcCcccccccCCccccccccccCCCcceEEEeeccceeeeeccccCC
Q 002588          635 ACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMN  714 (904)
Q Consensus       635 ~~~~~~sn~s~eql~fvl~ly~y~g~v~e~~~~~~~~~~~~~~~~~~~~~~l~~~~p~dtav~l~~~~l~~~fle~~~~~  714 (904)
                      +|++|.+-+++||+|||+|+|+|||+++|+|+.+++.||.   +.-+.++++.++||+||||.|..|+||.+||+++-+.
T Consensus       563 ~c~l~~~f~df~~~~f~~~~yS~f~kss~~i~~~~~~~r~---~~~s~tt~~he~vk~~~~~~Lnk~~l~t~~~s~~wi~  639 (1069)
T KOG2955|consen  563 ACELYISFADFEQLFFVLDLYSYFGKSSEKISIVKESKRQ---NTVSLTTGLHEKVKSDTAVKLNKKDLQTKFLSSSWIS  639 (1069)
T ss_pred             ccccccchhhhhHHHHHHHHHhhccccccceeeechhhhh---hhhhcccchhhhccccchhhhhhhhhhhhhcccceee
Confidence            9999999999999999999999999999999999999999   8889999999999999999999999999999999999


Q ss_pred             cCCCceeEEecCceeEEEeccccceeEEEeeeeeeeEEEEeeeeCCCCccccCCCcCCCCCCC-CccCCCCCCcceEEEE
Q 002588          715 IEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESC-PQDIGNGYPQLRAVFW  793 (904)
Q Consensus       715 ~~~~plvqf~g~~~~~~~thrtlgga~~vss~l~w~~v~v~cv~~e~~~~~e~~~~~~~~~~~-~~~~~~g~p~lr~vfw  793 (904)
                      ++|||++|+.+.|+..++||||++||++||++++||.++++||++..++.+||++      ++ ..+..+|.-.+|.+||
T Consensus       640 ~~~mp~~kg~p~~~~vsf~~~~~i~~~~~~~ni~~Ep~e~~~V~~d~~q~~~~s~------~Gdk~~k~l~~~~l~~~~~  713 (1069)
T KOG2955|consen  640 TQDMPLVKGLPKDLSVSFTHRTLIGAIAVSSNIYWEPIEVDCVDTDVEQEHENSW------NGDKLVKCLGSTPLRRVFW  713 (1069)
T ss_pred             ccCCccccCcccceeeeecceEEeccccchhheeecccccceEecchhhhhhccc------cchhHHhhcccCccceeee
Confidence            9999999999999999999999999999999999999999999999999999998      45 6677889889999999


Q ss_pred             EecCCcccccCCcCCCCeeeeeeeEEeeCCCCCccccceeeEEE
Q 002588          794 VHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSAC  837 (904)
Q Consensus       794 v~~~~~~~~~~~~~~~pfldi~~~~~ip~~~~d~e~hsl~v~a~  837 (904)
                      +.|+++....+...+ ||+||+++||||+.|.|+||||.+++|-
T Consensus       714 ~tNg~~~~~S~dtl~-~f~~is~~~vi~l~e~~~~~~S~~i~~y  756 (1069)
T KOG2955|consen  714 VTNGRHDEHSGDTLT-PFLDISITHVIPLSEKDMECHSVSIVAY  756 (1069)
T ss_pred             ecCCCCCCcccccee-ecccceeEEEeehhhcccccceeeehhc
Confidence            999988877777654 9999999999999999999999999985



>COG5043 MRS6 Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1809 consensus Vacuolar protein sorting-associated protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query904
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 50.6 bits (120), Expect = 2e-06
 Identities = 94/631 (14%), Positives = 176/631 (27%), Gaps = 193/631 (30%)

Query: 206 DLLPH--PDMFAD----------GSIARSNE-----GASHRDEDGAKRAFF--------G 240
           D+L         +           SI    E      +      G  R F+         
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS-GTLRLFWTLLSKQEEM 78

Query: 241 GERFIEGISAQAY---ITVQRTELNSPLGLEV-------QLHVTEAVCPALS----EP-- 284
            ++F+E +    Y   ++  +TE   P  +         +L+    V    +    +P  
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 285 GLR-ALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRS-LVSIVV----------DHIF-- 330
            LR ALL       V ++               +G++ +   V             IF  
Sbjct: 139 KLRQALLELRPAKNVLID-----------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 331 ---LCIKDAEFQLELLMQSLF--FSRATVSDGETASNLT-KITVAGLFLRDTFSRP--PS 382
               C    E  LE+L Q L         S  + +SN+  +I      LR         +
Sbjct: 188 NLKNC-NSPETVLEML-QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 383 TLVQPSMQAVSEDLVL----IPDFAKDF---CPVI-------------------CPLGDQ 416
            L           LVL           F   C ++                     L   
Sbjct: 246 CL-----------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 417 QWQINKGVPL-ICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGIL 475
              +       + L  L  +P   P       V++  P  + +       I+  + DG  
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPRE-----VLTTNPRRLSI-------IAESIRDG-- 340

Query: 476 VNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLD-NHARQRNLTAHSSFAGARLHIKKLF 534
                    +  N      + L   +   +N L+    R+        F        +L 
Sbjct: 341 -------LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-------F-------DRLS 379

Query: 535 -FSES---PSLKLRLLHLEKDPACFCLWEDQPIDAS--QRKWTAGASHL-SLSLETCTSI 587
            F  S   P++ L L+  +   +   +  ++    S  +++       + S+ LE    +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439

Query: 588 TGSQNSNSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQY-------- 639
                          L  + ++   +        ++PP            QY        
Sbjct: 440 ENEY----------ALHRSIVDHYNIPKTFDSDDLIPPY---------LDQYFYSHIGHH 480

Query: 640 LSNTSVEQLFFVL-DIYTYFGRVSEKIVRVGKNKSAMKSGNESLG-VKLMEN--APNDTA 695
           L N    +   +   ++  F  + +KI       +A  S   +L  +K  +     ND  
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 696 VSLAVKDLQLRFL---EPSSMNIEGMPLVQF 723
               V  + L FL   E + +  +   L++ 
Sbjct: 541 YERLVNAI-LDFLPKIEENLICSKYTDLLRI 570


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00