Citrus Sinensis ID: 002591
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 903 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FUY2 | 931 | Transcriptional corepress | yes | no | 0.799 | 0.775 | 0.734 | 0.0 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.326 | 0.193 | 0.326 | 7e-32 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.295 | 0.196 | 0.314 | 1e-28 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.320 | 0.229 | 0.298 | 1e-27 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.316 | 0.169 | 0.275 | 2e-24 | |
| O22212 | 554 | U4/U6 small nuclear ribon | no | no | 0.327 | 0.534 | 0.280 | 3e-24 | |
| O76734 | 579 | General transcriptional c | yes | no | 0.302 | 0.471 | 0.324 | 9e-24 | |
| D3TLL6 | 411 | Lissencephaly-1 homolog O | N/A | no | 0.306 | 0.673 | 0.255 | 2e-22 | |
| Q8BG40 | 658 | Katanin p80 WD40 repeat-c | yes | no | 0.273 | 0.375 | 0.296 | 4e-22 | |
| Q9BVA0 | 655 | Katanin p80 WD40 repeat-c | yes | no | 0.273 | 0.377 | 0.296 | 5e-22 |
| >sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2 | Back alignment and function desciption |
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Score = 1108 bits (2865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/758 (73%), Positives = 637/758 (84%), Gaps = 36/758 (4%)
Query: 171 RRDGAHLLNGNTNGLLGNDS--LMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQR 228
RRDG+HL NG+ NGL+GN+S +MRQNPG+ +++A++ YEE++K+P R+SLD+AAMK R
Sbjct: 185 RRDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVKMPTQRESLDEAAMK-R 243
Query: 229 FGENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEI 288
FG+N+GQLLDP+HAS +KSAAA+GQP+GQVLH T+GGMSPQVQ R+QQLPGS DIKSEI
Sbjct: 244 FGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMSPQVQTRNQQLPGSAVDIKSEI 303
Query: 289 NPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFH 348
NPVL PR A PEGSL+GIPGSNQG NNLTLKGWPLTG + LRSGLLQQQKPF+Q+ Q FH
Sbjct: 304 NPVLTPRTAVPEGSLIGIPGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQS-QSFH 362
Query: 349 QIQMLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVG 407
Q+ MLTPQHQQ L+LAQQNL S S S+E+RR +MLLNNRSM+LGKDGL +SVGDV+ NVG
Sbjct: 363 QLNMLTPQHQQQLMLAQQNLNSQSVSEENRRLKMLLNNRSMTLGKDGLGSSVGDVLPNVG 422
Query: 408 SPLPAGGHLLPRGDTDMLIKQQQQNSNPQQH----------------------TLSNQQS 445
S L GG LLPRGDTDML+K + QQ L+N Q
Sbjct: 423 SSLQPGGSLLPRGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNPQP 482
Query: 446 QSSNHNLHQQDKMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTA 505
QSSNH++HQQ+K+G GS+T+DGS+SNSFRGN+QV KNQ+GRKRKQPVSSSGPANSSGTA
Sbjct: 483 QSSNHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSGTA 542
Query: 506 NTAGPSPSSAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDK 565
NTAGPSPSSAPSTPSTHTPGDVISMP LPHSG +SK +MMFGT+G GTLTSPSNQL
Sbjct: 543 NTAGPSPSSAPSTPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQL---- 598
Query: 566 DLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSK 625
ADMDR VEDGSLDDNVESFLS +D D RDA R MDVS+GF+F E NSVRAST+K
Sbjct: 599 -----ADMDRFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTK 653
Query: 626 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 685
V CCHFSSDGK+LA+ GHDKKAVLW+TDT+K KT LEEH+++ITD+RFSPS RLATSSF
Sbjct: 654 VTCCHFSSDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSF 713
Query: 686 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 745
DKTVRVWDADN GYSLRTFMGHS+ V SLDFHP KDDLICSCD D EIRYWSINNGSCTR
Sbjct: 714 DKTVRVWDADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTR 773
Query: 746 VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL 805
V+KGG+ Q+RFQP +G+YLAA++ N+V++LD ETQA R SLQGH PI+SVCWDPSG+ L
Sbjct: 774 VYKGGSTQIRFQPRVGKYLAASSANLVNVLDVETQAIRHSLQGHANPINSVCWDPSGDFL 833
Query: 806 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 865
ASVSED V+VWT+G+GSEGECVHELSCNGNKF SCVFHP YPSLLVIGCYQSLELWNMSE
Sbjct: 834 ASVSEDMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVIGCYQSLELWNMSE 893
Query: 866 NKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903
NKTMTL AHEGLI +LAVST TG VASASHDK VKLWK
Sbjct: 894 NKTMTLPAHEGLITSLAVSTATGLVASASHDKLVKLWK 931
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Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
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Score = 139 bits (351), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 162/312 (51%), Gaps = 17/312 (5%)
Query: 599 DAGG--RGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK 656
D+GG R + + G KE + + S V FS DGK+LA+G D+ LW + +
Sbjct: 883 DSGGIVRFWEAATG---KELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQ 939
Query: 657 SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 716
+ H+S + V FSP+ LA+ S D+TVR+WD + G L F GH+ V S+ F
Sbjct: 940 CLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDI-SSGECLYIFQGHTGWVYSVAF 998
Query: 717 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR---FQPHLGRYLAAAAEN-VV 772
+ + ++ + GD +R W I++ C +F+G T+ +R F G LA+ +++ V
Sbjct: 999 NLDG-SMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSD-GAMLASGSDDQTV 1056
Query: 773 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGECVHELS 831
+ D + C +LQGHT + SV + P G +LAS +D VR+W + SG+ C++ L
Sbjct: 1057 RLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGN---CLYTLQ 1113
Query: 832 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYV 890
+ VF P +L Q + LW++S K + TL H + A+A S + +
Sbjct: 1114 GYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATL 1173
Query: 891 ASASHDKFVKLW 902
AS S D+ V+LW
Sbjct: 1174 ASGSGDQTVRLW 1185
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
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Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 140/277 (50%), Gaps = 10/277 (3%)
Query: 631 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 690
FS DG+ +A+G D +W + LE H S + V FSP R+A+ S DKT++
Sbjct: 933 FSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIK 992
Query: 691 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG- 749
+WD + G +T GH SV S+ F P+ + D D I+ W +G+CT+ +G
Sbjct: 993 IWDTAS-GTCTQTLEGHGGSVWSVAFSPDGQRVASGSD-DKTIKIWDTASGTCTQTLEGH 1050
Query: 750 -GTAQ-MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS 807
G Q + F P R + + ++ + I DA + C +L+GH + SV + P G+ +AS
Sbjct: 1051 GGWVQSVVFSPDGQRVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVAS 1110
Query: 808 VSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 866
S D ++++W SG+ C L +G HS F P + ++++W+ +
Sbjct: 1111 GSIDGTIKIWDAASGT---CTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASG 1167
Query: 867 K-TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902
T TL H G + ++A S + VAS S DK +K+W
Sbjct: 1168 TCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIW 1204
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Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
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Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 150/302 (49%), Gaps = 13/302 (4%)
Query: 606 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 665
DVSQG K ++++ T V FS+DG+ LA+G D+ +W+ T + H+
Sbjct: 796 DVSQG---KCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHT 852
Query: 666 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 725
+ + + +SP L + S D+T+++WD ++T GH+ V S+ F P+ L C
Sbjct: 853 NSVYSIAYSPDSKILVSGSGDRTIKLWDCQTH-ICIKTLHGHTNEVCSVAFSPDGQTLAC 911
Query: 726 SCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAENVVSILDAETQAC 782
D +R W+ G C + + G T + F P + + + V + D +T
Sbjct: 912 V-SLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKY 970
Query: 783 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 841
SL+GHT I + + P + LAS S D SVR+W + S G+C L + + ++ V
Sbjct: 971 ISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNI---STGQCFQILLEHTDWVYAVV 1027
Query: 842 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVK 900
FHP + +++LWN+S + + TL+ H I +A S + +ASAS D+ V+
Sbjct: 1028 FHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVR 1087
Query: 901 LW 902
LW
Sbjct: 1088 LW 1089
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 140/298 (46%), Gaps = 12/298 (4%)
Query: 611 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 670
F +E N + VI S DG+ +A+G DK LW D +T L H +
Sbjct: 1060 FEMQERNRLEGHKDGVISISISRDGQTIASGSLDKTIKLWSRDGRLFRT-LNGHEDAVYS 1118
Query: 671 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 730
V FSP +A+ DKT+++W + G L+T GH +V ++ F P+ +L S D
Sbjct: 1119 VSFSPDGQTIASGGSDKTIKLWQTSD-GTLLKTITGHEQTVNNVYFSPDGKNL-ASASSD 1176
Query: 731 GEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSL 786
I+ W +G G G +RF P G+ +AA +E+ V + + +L
Sbjct: 1177 HSIKLWDTTSGQLLMTLTGHSAGVITVRFSPD-GQTIAAGSEDKTVKLWHRQDGKLLKTL 1235
Query: 787 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 845
GH ++S+ + P G+ LAS S D ++++W + ++G+ V L + + F
Sbjct: 1236 NGHQDWVNSLSFSPDGKTLASASADKTIKLWRI---ADGKLVKTLKGHNDSVWDVNFSSD 1292
Query: 846 YPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903
++ +++LWN + T T H G + A+ ++ +ASAS D ++LW+
Sbjct: 1293 GKAIASASRDNTIKLWNRHGIELETFTGHSGGVYAVNFLPDSNIIASASLDNTIRLWQ 1350
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|O22212|PRP4L_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 147/321 (45%), Gaps = 25/321 (7%)
Query: 598 RDAGGRGMDVSQGFSFKEANSVRASTSK------VICCHFSSDGKLLATGGHDKKAVLWH 651
RD MD ++ K A + S + C FS DGK+LAT LW
Sbjct: 224 RDDPDEDMDAETKWALKHAKHMALDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWE 283
Query: 652 ----TDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 707
T+T+ L++H TDV FSP LAT+S D+T ++W D G L+TF GH
Sbjct: 284 MPQVTNTIAV---LKDHKERATDVVFSPVDDCLATASADRTAKLWKTD--GTLLQTFEGH 338
Query: 708 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYL 764
+ + FHP+ + + D R W IN G+ + +G + + FQ
Sbjct: 339 LDRLARVAFHPSG-KYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAA 397
Query: 765 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSE 823
+ +++ + D T L QGH KP+ SV + P+G LAS ED+ R+W +
Sbjct: 398 SCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDL---RM 454
Query: 824 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM-TLTAHEGLIAAL 881
+ ++ + + N + P L Y + +W+ + + +L HE +A+L
Sbjct: 455 RKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASL 514
Query: 882 AVSTETGYVASASHDKFVKLW 902
++ ++ +A+ SHD+ +KLW
Sbjct: 515 DITADSSCIATVSHDRTIKLW 535
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O76734|TUP1_DICDI General transcriptional corepressor tupA OS=Dictyostelium discoideum GN=tupA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 142/299 (47%), Gaps = 26/299 (8%)
Query: 626 VICC-HFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPR 679
V+CC +FS+DGK LATG ++ A ++ DT K + S I V FSP
Sbjct: 283 VVCCVNFSNDGKYLATGC-NRSAQIYDVDTGKKVHAFVDESEKDGDLYIRSVCFSPDGNY 341
Query: 680 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 739
LAT + DKTV+VWD TF GH + SLD+ + I S GD + + W I
Sbjct: 342 LATGAEDKTVKVWDIHTKKIQ-HTFYGHELDIYSLDYSSDG-RFIVSGSGDKKAKIWDIE 399
Query: 740 NGSCTRVF-------KGGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTK 791
G C K G + P GR +AA + +N+V + DA+T +GH
Sbjct: 400 KGKCAFTLGNEEVGPKNGVTSVAMSPD-GRLVAAGSLDNIVRLWDAQTGYFLERYEGHLD 458
Query: 792 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPTYPS 848
+ SV + P G+ LAS S D S+++W + SGS + NG+K S F P
Sbjct: 459 SVYSVAFSPDGKSLASGSLDKSLKLWDL-SGSRSRSRCRATFNGHKDFVLSVAFSPDGSW 517
Query: 849 LLVIGCYQSLELWNMSENKT-MTLTAHEGLIAALAVSTET---GYVASASHDKFVKLWK 903
L+ +S++ W+ T M L H+ + ++A+S + G A+ S D +LWK
Sbjct: 518 LISGSKDRSVQFWDPRNGTTHMMLQGHKNSVISVALSPKNNSHGVFATGSGDFRSRLWK 576
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Acts as component of the trfA-tupA corepressor complex which is involved in the repression of many genes in a wide variety of physiological processes. May also be involved in the derepression of at least some target genes. The complex is recruited to target genes by interaction with DNA-bound transcriptional repressors. The complex recruits histone deacetylases to produce a repressive chromatin structure, interacts with hypoacetylated N-terminal tails of histones H3 and H4 that have been programmed for repression by the action of histone deacetylases and interferes directly with the transcriptional machinery by associating with the RNA polymerase II mediator complex. Dictyostelium discoideum (taxid: 44689) |
| >sp|D3TLL6|LIS1_GLOMM Lissencephaly-1 homolog OS=Glossina morsitans morsitans PE=2 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 141/309 (45%), Gaps = 32/309 (10%)
Query: 620 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 679
RAS ++VI F L+ + D +W +T + + +L+ H+S + D+ F
Sbjct: 108 RASITRVI---FHPTYSLMLSASEDAVIKIWDFETGEYERSLKGHTSSVQDIAFDSQGKL 164
Query: 680 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 739
LA+ S D ++++WD ++T +GH +V S+ F P D + S D I+ W +
Sbjct: 165 LASCSADLSIKLWDFQQSYDCVKTMLGHDHNVSSVAFVP-AGDYVLSASRDQTIKMWEVA 223
Query: 740 NGSCTRVFKGGTAQMRF-QPHL-GRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSV 796
G C + + G +R + H+ G A+ + ++ + I ++ C+ L+ H ++ +
Sbjct: 224 TGYCVKTYSGHREWIRMVRVHMDGNIFASCSIDHSIRIWSINSRDCKAELRAHDHTVECI 283
Query: 797 CWDPS--------------------GELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 835
W P G LAS S D ++RVW VG G C+ L+ + N
Sbjct: 284 AWAPDISTTHINEAAGSDNKKGHHQGPFLASGSRDKTIRVWDVGVGL---CLFVLTGHDN 340
Query: 836 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS 894
FHP L+ +++ +W++ + M TL AH+ ++ + YV S S
Sbjct: 341 WVRELTFHPGGKYLVSASDDKTIRVWDLRNKRFMKTLYAHQHFCTSVDFHKKLPYVISGS 400
Query: 895 HDKFVKLWK 903
D VK+W+
Sbjct: 401 VDNTVKVWE 409
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Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes. Glossina morsitans morsitans (taxid: 37546) |
| >sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 13/260 (5%)
Query: 633 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 692
+ G+LLATGG D + LW + +L H+S + VR + + S ++RVW
Sbjct: 31 ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90
Query: 693 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--- 749
D + LRT MGH A++ SLDFHP + + S D I+ W I C ++G
Sbjct: 91 DLEA-AKILRTLMGHKANICSLDFHP-YGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQ 148
Query: 750 GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV 808
+RF P G++LA+AA++ V + D GHT P++ V + P+ LLAS
Sbjct: 149 AVRCLRFSPD-GKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASG 207
Query: 809 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 867
S D ++R W + C+ S +F+P L GC SL ++ +
Sbjct: 208 SSDRTIRFWDLEKFQVVSCIEG---EPGPVRSVLFNPDG-CCLYSGCQDSLRVYGWEPER 263
Query: 868 TM-TLTAHEGLIAALAVSTE 886
+ + G +A LA+ +
Sbjct: 264 CFDVVLVNWGKVADLAICND 283
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth. Mus musculus (taxid: 10090) |
| >sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 13/260 (5%)
Query: 633 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 692
+ G+LLATGG D + LW + +L H+S + VR + + S ++RVW
Sbjct: 31 ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90
Query: 693 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--- 749
D + LRT MGH A++ SLDFHP + + S D I+ W I C ++G
Sbjct: 91 DLEA-AKILRTLMGHKANICSLDFHP-YGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQ 148
Query: 750 GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV 808
+RF P G++LA+AA++ V + D GHT P++ V + P+ LLAS
Sbjct: 149 AVRCLRFSPD-GKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASG 207
Query: 809 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 867
S D ++R W + C+ S +F+P L GC SL ++ +
Sbjct: 208 SSDRTIRFWDLEKFQVVSCIEG---EPGPVRSVLFNPDG-CCLYSGCQDSLRVYGWEPER 263
Query: 868 TM-TLTAHEGLIAALAVSTE 886
+ + G +A LA+ +
Sbjct: 264 CFDVVLVNWGKVADLAICND 283
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 903 | ||||||
| 356507762 | 912 | PREDICTED: transcriptional corepressor L | 0.992 | 0.982 | 0.819 | 0.0 | |
| 356507764 | 903 | PREDICTED: transcriptional corepressor L | 0.982 | 0.982 | 0.810 | 0.0 | |
| 356563836 | 912 | PREDICTED: transcriptional corepressor L | 0.986 | 0.976 | 0.819 | 0.0 | |
| 225430178 | 910 | PREDICTED: transcriptional corepressor L | 0.981 | 0.973 | 0.827 | 0.0 | |
| 449522548 | 900 | PREDICTED: transcriptional corepressor L | 0.974 | 0.977 | 0.778 | 0.0 | |
| 449441950 | 900 | PREDICTED: transcriptional corepressor L | 0.974 | 0.977 | 0.777 | 0.0 | |
| 357466351 | 941 | NAD(P)H-quinone oxidoreductase subunit [ | 0.968 | 0.929 | 0.757 | 0.0 | |
| 356563834 | 903 | PREDICTED: transcriptional corepressor L | 0.976 | 0.976 | 0.810 | 0.0 | |
| 449441952 | 891 | PREDICTED: transcriptional corepressor L | 0.964 | 0.977 | 0.770 | 0.0 | |
| 356515484 | 892 | PREDICTED: transcriptional corepressor L | 0.802 | 0.812 | 0.817 | 0.0 |
| >gi|356507762|ref|XP_003522633.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1396 bits (3613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 753/919 (81%), Positives = 799/919 (86%), Gaps = 23/919 (2%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQ QQQ Q QQ Q Q QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQQQQQHMQMQQLL 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q+ Q QQ Q+ QQQQQ QQQ QQQQQQQQQ PQ QQQ QQQQ RD AHLLNG
Sbjct: 121 LQRAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQSQQQQSQPQQQQSRDRAHLLNG 180
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
+ NGL+GN PGTANA+AT+MYEE+LKLP+ RD LDDAAMKQRFGENMGQLLDPN
Sbjct: 181 SANGLVGN-------PGTANALATKMYEERLKLPLQRDPLDDAAMKQRFGENMGQLLDPN 233
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAA GQPSGQVLHG AGGMSPQVQAR+QQLPGST DIK EI+PVLNPRAAGPE
Sbjct: 234 HASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAAGPE 293
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 359
GSLMG+PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKPF+QAPQPFHQ+QMLTPQHQQ
Sbjct: 294 GSLMGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQ 353
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNL SPSAS+ESRR RMLLNNR++ L KD LSN VGDVVSNVGSPL GG PR
Sbjct: 354 LMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPLQGGGPPFPR 413
Query: 420 GDTDMLIKQQQQNSNPQQ--------------HTLSNQQSQSSNHNLHQQDKMGPAG-SV 464
GDTDML+K + QQ H LSNQQSQ+SNH++HQQDK+G G SV
Sbjct: 414 GDTDMLMKLKLAQLQQQQQQSSTNAQQQQLQQHVLSNQQSQTSNHSMHQQDKVGGGGGSV 473
Query: 465 TLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTP 524
T+DGSMSNSFRGNDQVSKNQ RKRKQP SSSGPANSSGTANT GPSPSSAPSTPSTHTP
Sbjct: 474 TVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTP 533
Query: 525 GDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDD 584
GDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+AD+DR VEDGSLD+
Sbjct: 534 GDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDE 593
Query: 585 NVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD 644
NVESFLSHDDTDPRD GR MDVS+GF+F + NSVRASTSKV CCHFSSDGKLLA+GGHD
Sbjct: 594 NVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGHD 653
Query: 645 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 704
K+ VLW+TD+LK K LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD DNPGYSLRTF
Sbjct: 654 KRVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTF 713
Query: 705 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 764
GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT QMRFQP LGRYL
Sbjct: 714 TGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQMRFQPRLGRYL 773
Query: 765 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG 824
AAAAEN+VSI D ETQACR SL+GHTKP+D VCWDPSGELLASVSEDSVRVWT+GSGSEG
Sbjct: 774 AAAAENIVSIFDVETQACRYSLKGHTKPVDCVCWDPSGELLASVSEDSVRVWTLGSGSEG 833
Query: 825 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 884
ECVHELSCNGNKFH+ VFHPTYPSLLVIGCYQSLELWNMSENKTMTL+AH+GLI +LAVS
Sbjct: 834 ECVHELSCNGNKFHASVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHDGLITSLAVS 893
Query: 885 TETGYVASASHDKFVKLWK 903
T G VASASHDKF+KLWK
Sbjct: 894 TVNGLVASASHDKFLKLWK 912
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507764|ref|XP_003522634.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1372 bits (3550), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 745/919 (81%), Positives = 790/919 (85%), Gaps = 32/919 (3%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQ QQQ Q QQ Q Q QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQQQQQHMQMQQLL 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q+ Q QQ Q+ QQQQQ QQQ QQQQQQQQQ PQ QQQ QQQQ RD AHLLNG
Sbjct: 121 LQRAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQSQQQQSQPQQQQSRDRAHLLNG 180
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
+ NGL+GN PGTANA+AT+MYEE+LKLP+ RD LDDAAMKQRFGENMGQLLDPN
Sbjct: 181 SANGLVGN-------PGTANALATKMYEERLKLPLQRDPLDDAAMKQRFGENMGQLLDPN 233
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAA GQPSGQVLHG AGGMSPQVQAR+QQLPGST DIK EI+PVLNPRAAGPE
Sbjct: 234 HASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAAGPE 293
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 359
GSLMG+PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKPF+QAPQPFHQ+QMLTPQHQQ
Sbjct: 294 GSLMGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQ 353
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNL SPSAS+ESRR RMLLNNR++ L KD LSN VGDVVSNVGSPL GG PR
Sbjct: 354 LMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPLQGGGPPFPR 413
Query: 420 GDTDMLIKQQQQNSNPQQ--------------HTLSNQQSQSSNHNLHQQDKMGPAG-SV 464
GDTDML+K + QQ H LSNQQSQ+SNH++HQQDK+G G SV
Sbjct: 414 GDTDMLMKLKLAQLQQQQQQSSTNAQQQQLQQHVLSNQQSQTSNHSMHQQDKVGGGGGSV 473
Query: 465 TLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTP 524
T+DGSMSNSFRGNDQVSKNQ RKRKQP SSSGPANSSGTANT GPSPSSAPSTPSTHTP
Sbjct: 474 TVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTP 533
Query: 525 GDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDD 584
GDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQL AD+DR VEDGSLD+
Sbjct: 534 GDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQL---------ADVDRFVEDGSLDE 584
Query: 585 NVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD 644
NVESFLSHDDTDPRD GR MDVS+GF+F + NSVRASTSKV CCHFSSDGKLLA+GGHD
Sbjct: 585 NVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGHD 644
Query: 645 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 704
K+ VLW+TD+LK K LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD DNPGYSLRTF
Sbjct: 645 KRVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTF 704
Query: 705 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 764
GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT QMRFQP LGRYL
Sbjct: 705 TGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQMRFQPRLGRYL 764
Query: 765 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG 824
AAAAEN+VSI D ETQACR SL+GHTKP+D VCWDPSGELLASVSEDSVRVWT+GSGSEG
Sbjct: 765 AAAAENIVSIFDVETQACRYSLKGHTKPVDCVCWDPSGELLASVSEDSVRVWTLGSGSEG 824
Query: 825 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 884
ECVHELSCNGNKFH+ VFHPTYPSLLVIGCYQSLELWNMSENKTMTL+AH+GLI +LAVS
Sbjct: 825 ECVHELSCNGNKFHASVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHDGLITSLAVS 884
Query: 885 TETGYVASASHDKFVKLWK 903
T G VASASHDKF+KLWK
Sbjct: 885 TVNGLVASASHDKFLKLWK 903
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563836|ref|XP_003550164.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1364 bits (3531), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 757/924 (81%), Positives = 803/924 (86%), Gaps = 33/924 (3%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQ QQQ Q Q QQQQQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQGQQQPQPQ-KLQHQQQQQ 119
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR----RDGAH 176
QQQ +QMQQILLQR QQQQQ QQQ QQQQQ QQQ QQ QQQ QQQQQ RD AH
Sbjct: 120 QQQHMQMQQILLQRAQQQQQQQQQQQQQQQQPQQQQQQQQPQQQHQQQQQPQQQGRDRAH 179
Query: 177 LLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQL 236
LLNG TNGL+GN P TANA+AT+MYEE+LKLP+ RDSL+DAAMKQRFG+ Q+
Sbjct: 180 LLNGGTNGLVGN-------PSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGD---QI 229
Query: 237 LDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRA 296
LDPNHAS +KS+AATGQPSGQVLHG AG MSPQVQARSQQLPGSTPDIKSEINPVLNPRA
Sbjct: 230 LDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRA 289
Query: 297 AGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKP-FIQAPQPFHQIQMLTP 355
AGPEGSL+ +PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKP FIQ+PQ FHQ+ MLTP
Sbjct: 290 AGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQQFHQLPMLTP 349
Query: 356 QHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGG 414
QHQQ L+LAQQNL SPSASD+SRR RMLLNNR+M + KDGLSN VGD+VSNVGSPL AGG
Sbjct: 350 QHQQQLMLAQQNLASPSASDDSRRIRMLLNNRNMGVTKDGLSNPVGDIVSNVGSPLQAGG 409
Query: 415 HLLPRGDTDMLIKQQQQNSNP-------------QQHTLSNQQSQSSNHNLHQQDKMGPA 461
PR DTDML+K + QQHTLSNQQSQ+SNH++HQQDKMG
Sbjct: 410 PAFPRSDTDMLMKLKLAQLQHQQQQNANPPQQQLQQHTLSNQQSQTSNHSMHQQDKMGGG 469
Query: 462 GS--VTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTP 519
G V +DGSMSNSFRGNDQVSKNQTGRKRKQP +SSGPANSSGTANTAGPSPSSAPSTP
Sbjct: 470 GGSSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPSTP 528
Query: 520 STHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVED 579
STHTPGDV+SMP LPHSG++SKPLMMF DGAGTLTSPSNQLWDDKDLEL+AD+DR VED
Sbjct: 529 STHTPGDVMSMPVLPHSGSSSKPLMMFSADGAGTLTSPSNQLWDDKDLELQADVDRFVED 588
Query: 580 GSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLA 639
GSLDDNVESFLS DDTD RD GR MDVS+GF+F E NSVRAST+KV CCHFSSDGKLLA
Sbjct: 589 GSLDDNVESFLSPDDTDLRDTVGRCMDVSKGFTFSEINSVRASTTKVGCCHFSSDGKLLA 648
Query: 640 TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 699
+GGHDKKAVLW TD+LK K LEEH+SLITDVRFSPSMPRLATSS DKTVRVWD +NPGY
Sbjct: 649 SGGHDKKAVLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSHDKTVRVWDVENPGY 708
Query: 700 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPH 759
SLRTF GHS+ VMSLDFHPNKDDLICSCD DGEIRYWSINNG+C RV KGG QMRFQP
Sbjct: 709 SLRTFTGHSSPVMSLDFHPNKDDLICSCDADGEIRYWSINNGNCARVSKGGAVQMRFQPR 768
Query: 760 LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 819
LGRYLAAAAENVVSILD ETQA R SL+GHTK I SVCWDPSGE LASVSEDSVRVWT+G
Sbjct: 769 LGRYLAAAAENVVSILDVETQASRYSLKGHTKSIRSVCWDPSGEFLASVSEDSVRVWTLG 828
Query: 820 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIA 879
SGSEGECVHELSCNGNKFHSCVFHPTY SLLV+GCYQSLELWNM+ENKTMTL+AHEGLIA
Sbjct: 829 SGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGLIA 888
Query: 880 ALAVSTETGYVASASHDKFVKLWK 903
ALAVST G VASASHDKFVKLWK
Sbjct: 889 ALAVSTVNGLVASASHDKFVKLWK 912
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430178|ref|XP_002284900.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1350 bits (3493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 767/927 (82%), Positives = 810/927 (87%), Gaps = 41/927 (4%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQ QQ Q Q QQ QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQQPQHQQQQQQQQQLQMQQL 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q RHAQQQQQ QQQ QQQQQQQQQ QQQQ QQQQRRDGAHLLNG
Sbjct: 121 LLQ----------RHAQQQQQQQQQQQQQQQQQQQ-----QQQQQPQQQQRRDGAHLLNG 165
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
TNGL+GND LMR NP TANA+AT+MYEE+LKLP+ RDSLDDA MKQRF EN+GQLLDPN
Sbjct: 166 TTNGLVGNDPLMRTNPATANALATKMYEERLKLPIQRDSLDDATMKQRFSENVGQLLDPN 225
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HA+ +KSAAA GQPSGQVLH +AGGMSPQVQAR+QQLPGSTPDIKSE+NPVLNPRA GPE
Sbjct: 226 HATILKSAAAAGQPSGQVLHVSAGGMSPQVQARNQQLPGSTPDIKSEMNPVLNPRAGGPE 285
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQA-PQPFHQIQMLTPQHQQ 359
GSL+GIPGSNQGGNNLTLKGWPLTGL+ LRSGLLQQ KPFIQA PQPFHQ+QML QQ
Sbjct: 286 GSLIGIPGSNQGGNNLTLKGWPLTGLDQLRSGLLQQPKPFIQAAPQPFHQLQMLPQHQQQ 345
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
LLLAQQ+LTSP SDESRR RMLLNNR+M+LGKDG SNS+GDV NVGSPL G +LPR
Sbjct: 346 LLLAQQSLTSP-PSDESRRLRMLLNNRNMNLGKDGPSNSIGDV-PNVGSPLQPGCAVLPR 403
Query: 420 GDTDMLIKQQQ-----------------------QNSNPQQHTLSNQQSQSSNHNLHQQD 456
GDT+ML+K + Q QQH LS+QQSQSSNHN+HQQD
Sbjct: 404 GDTEMLMKLKMAQMHHQQQQQQQQQQNSNQPQQQQQQQLQQHALSSQQSQSSNHNMHQQD 463
Query: 457 KMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAP 516
KMG AGS+T+DGSMSNSFRGNDQ SKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAP
Sbjct: 464 KMGGAGSITVDGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAP 523
Query: 517 STPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRL 576
STPSTHTPGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+ADMDR
Sbjct: 524 STPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADMDRF 583
Query: 577 VEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK 636
VEDGSLDDNVESFLSHDDTDPRD GR MDVS+GF+F E +SVRAS SKVICCHFSSDGK
Sbjct: 584 VEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFTEVSSVRASASKVICCHFSSDGK 643
Query: 637 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 696
LLA+GGHDKKAVLW+TDTLK+KT LEEHS LITDVRFSPSMPRLATSSFDKTVRVWDAD+
Sbjct: 644 LLASGGHDKKAVLWYTDTLKTKTTLEEHSMLITDVRFSPSMPRLATSSFDKTVRVWDADS 703
Query: 697 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 756
YSLRTF GHSASVMSLDFHPN+DDLICSCDGDGEIRYW+I NGSC RVFKGGTAQMRF
Sbjct: 704 TSYSLRTFTGHSASVMSLDFHPNQDDLICSCDGDGEIRYWNIKNGSCARVFKGGTAQMRF 763
Query: 757 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVW 816
QP GRYLAAAAENVVSILD ETQACR SLQGHTKPI SVCWDPSGE LASVSEDSVRVW
Sbjct: 764 QPRHGRYLAAAAENVVSILDVETQACRHSLQGHTKPIHSVCWDPSGEFLASVSEDSVRVW 823
Query: 817 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG 876
T+GSG+EGECVHELSCNGNKFHSCVFHPTY SLLVIGCYQSLELWNMSENKTMTL+AH+G
Sbjct: 824 TLGSGNEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHDG 883
Query: 877 LIAALAVSTETGYVASASHDKFVKLWK 903
LIAALAVST +G VASASHDK VKLWK
Sbjct: 884 LIAALAVSTVSGLVASASHDKIVKLWK 910
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522548|ref|XP_004168288.1| PREDICTED: transcriptional corepressor LEUNIG-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1349 bits (3492), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/923 (77%), Positives = 790/923 (85%), Gaps = 43/923 (4%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKA+AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHS+VAASYIETQLIKAREQQQ QQQQQQQ Q QQQQ Q
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQH----------- 109
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
MQ +L+QRHAQQQQQ QQQ Q QQQQQ Q Q QQQ QQQQQRRDGA LLNG
Sbjct: 110 ------MQMLLMQRHAQQQQQQQQQQQHQQQQQPQ---QQQQQSQQQQQQRRDGAQLLNG 160
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
++NG +GND LMRQNPG+ NA+AT+MYE++LKLP+ RDSLDD AMKQR+G+N+GQLLDPN
Sbjct: 161 SSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDGAMKQRYGDNVGQLLDPN 220
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAAT Q SGQVLHG+ GGMSPQVQ RSQQLPGSTPDIK+EINPVLNPRAAGPE
Sbjct: 221 HASILKSAAATSQSSGQVLHGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPE 280
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 359
GSLMGIPGSN GGNNLTLKGWPLTGL+ LRSG+LQQQKPFIQAPQ F Q+QMLTPQHQQ
Sbjct: 281 GSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQ 340
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNLTSPS +D+ RR RMLLN R + KDGLSNSVGDVV NVGSPL AG LLPR
Sbjct: 341 LMLAQQNLTSPSVNDDGRRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPR 397
Query: 420 GD-TDMLIKQQQ-----------------QNSNPQQHTLSNQQSQSSNHNLHQQDKMGPA 461
GD TDM++K + Q QQHTLSNQQSQSSNHN+HQQ+K+G A
Sbjct: 398 GDNTDMILKIKMAQLQQQQQQQQSSSQQQQQQQLQQHTLSNQQSQSSNHNMHQQEKIGGA 457
Query: 462 GSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 521
GSVT+DGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST
Sbjct: 458 GSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 517
Query: 522 HTPGDVISMPALPHSGTTSKPL-MMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDG 580
HTPGD ISMPALPHSG++SKPL MMF +DG GT TSPSNQLWDDK+LEL+ADMDR VEDG
Sbjct: 518 HTPGDAISMPALPHSGSSSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDG 577
Query: 581 SLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT 640
SLDDNV+SFLSHDD DPRD GR MD S+GF+F E NSVRASTSKV CHFSSDGKLL +
Sbjct: 578 SLDDNVDSFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVS 637
Query: 641 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 700
GGHDKKAVLW+T+ LK KT+LEEH++++TDVRFSPSMPRLATSSFD+TVRVWDADN YS
Sbjct: 638 GGHDKKAVLWYTENLKPKTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYS 697
Query: 701 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 760
LRTF GHSASVMSLDFHP KDD ICSCDGDGEIRYW+I NGSC VFKGGT MRFQP L
Sbjct: 698 LRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGPMRFQPRL 757
Query: 761 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 820
GRY +A +N+V+I D ETQA SL+GHTK + S+CWDPSGE LASVSEDSVRVWT+ S
Sbjct: 758 GRYFSAVVDNIVTIFDVETQARVHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLAS 817
Query: 821 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA 880
G+EGE +HELSCNGNKFHSCVFHPTY +LLVIGCY+SLELWN +ENKTMTL+AHEGL+++
Sbjct: 818 GNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSS 877
Query: 881 LAVSTETGYVASASHDKFVKLWK 903
LAVS +G VASASHD+F+KLWK
Sbjct: 878 LAVSAASGLVASASHDRFIKLWK 900
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441950|ref|XP_004138745.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1348 bits (3488), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 718/923 (77%), Positives = 789/923 (85%), Gaps = 43/923 (4%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKA+AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHS+VAASYIETQLIKAREQQQ QQQQQQQ Q QQQQ Q
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQH----------- 109
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
MQ +L+QRHAQQQQQ QQQ Q QQQQQ Q Q QQQ QQQQQRRDGA LLNG
Sbjct: 110 ------MQMLLMQRHAQQQQQQQQQQQHQQQQQPQ---QQQQQSQQQQQQRRDGAQLLNG 160
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
++NG +GND LMRQNPG+ NA+AT+MYE++LKLP+ RDSLDD AMKQR+G+N+GQLLDPN
Sbjct: 161 SSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDGAMKQRYGDNVGQLLDPN 220
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAAT Q SGQVLHG+ GGMSPQVQ RSQQLPGSTPDIK+EINPVLNPRAAGPE
Sbjct: 221 HASILKSAAATSQSSGQVLHGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPE 280
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 359
GSLMGIPGSN GGNNLTLKGWPLTGL+ LRSG+LQQQKPFIQAPQ F Q+QMLTPQHQQ
Sbjct: 281 GSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQ 340
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNLTSPS +D+ RR RMLLN R + KDGLSNSVGDVV NVGSPL AG LLPR
Sbjct: 341 LMLAQQNLTSPSVNDDGRRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPR 397
Query: 420 GD-TDMLIKQQQ-----------------QNSNPQQHTLSNQQSQSSNHNLHQQDKMGPA 461
GD TDM++K + Q QQH LSNQQSQSSNHN+HQQ+K+G A
Sbjct: 398 GDNTDMILKIKMAQLQQQQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGA 457
Query: 462 GSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 521
GSVT+DGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST
Sbjct: 458 GSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 517
Query: 522 HTPGDVISMPALPHSGTTSKPL-MMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDG 580
HTPGD ISMPALPHSG++SKPL MMF +DG GT TSPSNQLWDDK+LEL+ADMDR VEDG
Sbjct: 518 HTPGDAISMPALPHSGSSSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDG 577
Query: 581 SLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT 640
SLDDNV+SFLSHDD DPRD GR MD S+GF+F E NSVRASTSKV CHFSSDGKLL +
Sbjct: 578 SLDDNVDSFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVS 637
Query: 641 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 700
GGHDKKAVLW+T+ LK KT+LEEH++++TDVRFSPSMPRLATSSFD+TVRVWDADN YS
Sbjct: 638 GGHDKKAVLWYTENLKPKTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYS 697
Query: 701 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 760
LRTF GHSASVMSLDFHP KDD ICSCDGDGEIRYW+I NGSC VFKGGT MRFQP L
Sbjct: 698 LRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGPMRFQPRL 757
Query: 761 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 820
GRY +A +N+V+I D ETQA SL+GHTK + S+CWDPSGE LASVSEDSVRVWT+ S
Sbjct: 758 GRYFSAVVDNIVTIFDVETQARVHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLAS 817
Query: 821 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA 880
G+EGE +HELSCNGNKFHSCVFHPTY +LLVIGCY+SLELWN +ENKTMTL+AHEGL+++
Sbjct: 818 GNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSS 877
Query: 881 LAVSTETGYVASASHDKFVKLWK 903
LAVS +G VASASHD+F+KLWK
Sbjct: 878 LAVSAASGLVASASHDRFIKLWK 900
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357466351|ref|XP_003603460.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] gi|355492508|gb|AES73711.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1347 bits (3485), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 734/969 (75%), Positives = 785/969 (81%), Gaps = 94/969 (9%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQ Q QQ Q Q QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQ 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q RHAQQQQQ QQ QQ Q Q QQ QQQQ RD HLLNG
Sbjct: 121 LLMQ---------RHAQQQQQQQQHQQQPQSQPQQ--------PQPQQQQNRDRTHLLNG 163
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
+ NGL GN P TANA+AT+MYEE+LK P RDSLDDAAMKQRFGENMGQLLDPN
Sbjct: 164 SANGLAGN-------PATANAIATKMYEERLKGPPQRDSLDDAAMKQRFGENMGQLLDPN 216
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAA GQPSGQVLHGTAGGMSPQVQARSQQLPGST DIKSEINPVLNPRAAGPE
Sbjct: 217 HASILKSAAAGGQPSGQVLHGTAGGMSPQVQARSQQLPGSTTDIKSEINPVLNPRAAGPE 276
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 359
GSL+GI GSNQG NNLTLKGWPLTGLE LRSGLLQQQKP++QAPQPFHQ+QMLTPQHQQ
Sbjct: 277 GSLLGISGSNQGNNNLTLKGWPLTGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQ 336
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQ+L SPSAS+ESRR RMLLNNR++ L KDGLSN GD++SNVGSPL GG PR
Sbjct: 337 LMLAQQSLASPSASEESRRLRMLLNNRNIGLNKDGLSNPGGDMLSNVGSPLHGGGPPFPR 396
Query: 420 GDTDMLIKQQ--------------------QQNSNPQQHTLSNQQSQSSNHNLHQQDKMG 459
GDTDML+K + Q QQH LSNQQSQ+SNH++HQQDK+G
Sbjct: 397 GDTDMLMKLKLAQLQQQQQQQQHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVG 456
Query: 460 PAG-SVTLDGSMSNSFRGNDQ--------------------------------------- 479
G SVT+DGSMSNS+RGNDQ
Sbjct: 457 GGGGSVTMDGSMSNSYRGNDQIKVQPTEQSEEVLMFCGIPPFACFWSKDEILNDGWLHSP 516
Query: 480 -----VSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALP 534
VSKNQ GRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGD +SMPALP
Sbjct: 517 IFAIVVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALP 576
Query: 535 HSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD 594
H+ ++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+AD+DR V+DGSLDDNVESFLS DD
Sbjct: 577 HNSSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDD 636
Query: 595 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT 654
TDPRD GR MDVS+GF+F + NSVRAS+SK+ CCHFSSDGKLLA+GGHDKKAV+W+ D+
Sbjct: 637 TDPRDPVGRCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADS 696
Query: 655 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 714
LK K LEEHS+LITDVRFS SMPRLATSSFDKTVRVWD DNPGYSLRTF GHS SVMSL
Sbjct: 697 LKQKAILEEHSALITDVRFSASMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSL 756
Query: 715 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI 774
DFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT QMRFQP LGRYLAAAAEN+VSI
Sbjct: 757 DFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQMRFQPRLGRYLAAAAENIVSI 816
Query: 775 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG 834
LD ETQACR SL+GHTK IDSVCWDPSGELLASVSEDSVR+WT+ EGECVHELSCNG
Sbjct: 817 LDVETQACRYSLKGHTKTIDSVCWDPSGELLASVSEDSVRIWTL----EGECVHELSCNG 872
Query: 835 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 894
+KFHSCVFHPT+PSLLVIGCYQSLELWNM+ENKTMTL+AH+GLI ALAVST G VASAS
Sbjct: 873 SKFHSCVFHPTFPSLLVIGCYQSLELWNMAENKTMTLSAHDGLITALAVSTVNGLVASAS 932
Query: 895 HDKFVKLWK 903
HDKF+KLWK
Sbjct: 933 HDKFIKLWK 941
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563834|ref|XP_003550163.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1340 bits (3467), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 749/924 (81%), Positives = 794/924 (85%), Gaps = 42/924 (4%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQ QQQ Q Q QQQQQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQGQQQPQPQ-KLQHQQQQQ 119
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR----RDGAH 176
QQQ +QMQQILLQR QQQQQ QQQ QQQQQ QQQ QQ QQQ QQQQQ RD AH
Sbjct: 120 QQQHMQMQQILLQRAQQQQQQQQQQQQQQQQPQQQQQQQQPQQQHQQQQQPQQQGRDRAH 179
Query: 177 LLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQL 236
LLNG TNGL+GN P TANA+AT+MYEE+LKLP+ RDSL+DAAMKQRFG+ Q+
Sbjct: 180 LLNGGTNGLVGN-------PSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGD---QI 229
Query: 237 LDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRA 296
LDPNHAS +KS+AATGQPSGQVLHG AG MSPQVQARSQQLPGSTPDIKSEINPVLNPRA
Sbjct: 230 LDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRA 289
Query: 297 AGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKP-FIQAPQPFHQIQMLTP 355
AGPEGSL+ +PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKP FIQ+PQ FHQ+ MLTP
Sbjct: 290 AGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQQFHQLPMLTP 349
Query: 356 QHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGG 414
QHQQ L+LAQQNL SPSASD+SRR RMLLNNR+M + KDGLSN VGD+VSNVGSPL AGG
Sbjct: 350 QHQQQLMLAQQNLASPSASDDSRRIRMLLNNRNMGVTKDGLSNPVGDIVSNVGSPLQAGG 409
Query: 415 HLLPRGDTDMLIKQQQQNSNP-------------QQHTLSNQQSQSSNHNLHQQDKMGPA 461
PR DTDML+K + QQHTLSNQQSQ+SNH++HQQDKMG
Sbjct: 410 PAFPRSDTDMLMKLKLAQLQHQQQQNANPPQQQLQQHTLSNQQSQTSNHSMHQQDKMGGG 469
Query: 462 GS--VTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTP 519
G V +DGSMSNSFRGNDQVSKNQTGRKRKQP +SSGPANSSGTANTAGPSPSSAPSTP
Sbjct: 470 GGSSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPSTP 528
Query: 520 STHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVED 579
STHTPGDV+SMP LPHSG++SKPLMMF DGAGTLTSPSNQL AD+DR VED
Sbjct: 529 STHTPGDVMSMPVLPHSGSSSKPLMMFSADGAGTLTSPSNQL---------ADVDRFVED 579
Query: 580 GSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLA 639
GSLDDNVESFLS DDTD RD GR MDVS+GF+F E NSVRAST+KV CCHFSSDGKLLA
Sbjct: 580 GSLDDNVESFLSPDDTDLRDTVGRCMDVSKGFTFSEINSVRASTTKVGCCHFSSDGKLLA 639
Query: 640 TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 699
+GGHDKKAVLW TD+LK K LEEH+SLITDVRFSPSMPRLATSS DKTVRVWD +NPGY
Sbjct: 640 SGGHDKKAVLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSHDKTVRVWDVENPGY 699
Query: 700 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPH 759
SLRTF GHS+ VMSLDFHPNKDDLICSCD DGEIRYWSINNG+C RV KGG QMRFQP
Sbjct: 700 SLRTFTGHSSPVMSLDFHPNKDDLICSCDADGEIRYWSINNGNCARVSKGGAVQMRFQPR 759
Query: 760 LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 819
LGRYLAAAAENVVSILD ETQA R SL+GHTK I SVCWDPSGE LASVSEDSVRVWT+G
Sbjct: 760 LGRYLAAAAENVVSILDVETQASRYSLKGHTKSIRSVCWDPSGEFLASVSEDSVRVWTLG 819
Query: 820 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIA 879
SGSEGECVHELSCNGNKFHSCVFHPTY SLLV+GCYQSLELWNM+ENKTMTL+AHEGLIA
Sbjct: 820 SGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGLIA 879
Query: 880 ALAVSTETGYVASASHDKFVKLWK 903
ALAVST G VASASHDKFVKLWK
Sbjct: 880 ALAVSTVNGLVASASHDKFVKLWK 903
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441952|ref|XP_004138746.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1324 bits (3426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 711/923 (77%), Positives = 780/923 (84%), Gaps = 52/923 (5%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKA+AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHS+VAASYIETQLIKAREQQQ QQQQQQQ Q QQQQ Q
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQH----------- 109
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
MQ +L+QRHAQQQQQ QQQ Q QQQQQ Q Q QQQ QQQQQRRDGA LLNG
Sbjct: 110 ------MQMLLMQRHAQQQQQQQQQQQHQQQQQPQ---QQQQQSQQQQQQRRDGAQLLNG 160
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
++NG +GND LMRQNPG+ NA+AT+MYE++LKLP+ RDSLDD AMKQR+G+N+GQLLDPN
Sbjct: 161 SSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDGAMKQRYGDNVGQLLDPN 220
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPE 300
HAS +KSAAAT Q SGQVLHG+ GGMSPQVQ RSQQLPGSTPDIK+EINPVLNPRAAGPE
Sbjct: 221 HASILKSAAATSQSSGQVLHGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPE 280
Query: 301 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 359
GSLMGIPGSN GGNNLTLKGWPLTGL+ LRSG+LQQQKPFIQAPQ F Q+QMLTPQHQQ
Sbjct: 281 GSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQ 340
Query: 360 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 419
L+LAQQNLTSPS +D+ RR RMLLN R + KDGLSNSVGDVV NVGSPL AG LLPR
Sbjct: 341 LMLAQQNLTSPSVNDDGRRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPR 397
Query: 420 GD-TDMLIKQQQ-----------------QNSNPQQHTLSNQQSQSSNHNLHQQDKMGPA 461
GD TDM++K + Q QQH LSNQQSQSSNHN+HQQ+K+G A
Sbjct: 398 GDNTDMILKIKMAQLQQQQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGA 457
Query: 462 GSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 521
GSVT+DGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST
Sbjct: 458 GSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 517
Query: 522 HTPGDVISMPALPHSGTTSKPL-MMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDG 580
HTPGD ISMPALPHSG++SKPL MMF +DG GT TSPSNQL ADMDR VEDG
Sbjct: 518 HTPGDAISMPALPHSGSSSKPLTMMFNSDGTGTFTSPSNQL---------ADMDRYVEDG 568
Query: 581 SLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT 640
SLDDNV+SFLSHDD DPRD GR MD S+GF+F E NSVRASTSKV CHFSSDGKLL +
Sbjct: 569 SLDDNVDSFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVS 628
Query: 641 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 700
GGHDKKAVLW+T+ LK KT+LEEH++++TDVRFSPSMPRLATSSFD+TVRVWDADN YS
Sbjct: 629 GGHDKKAVLWYTENLKPKTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYS 688
Query: 701 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 760
LRTF GHSASVMSLDFHP KDD ICSCDGDGEIRYW+I NGSC VFKGGT MRFQP L
Sbjct: 689 LRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGPMRFQPRL 748
Query: 761 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 820
GRY +A +N+V+I D ETQA SL+GHTK + S+CWDPSGE LASVSEDSVRVWT+ S
Sbjct: 749 GRYFSAVVDNIVTIFDVETQARVHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLAS 808
Query: 821 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA 880
G+EGE +HELSCNGNKFHSCVFHPTY +LLVIGCY+SLELWN +ENKTMTL+AHEGL+++
Sbjct: 809 GNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSS 868
Query: 881 LAVSTETGYVASASHDKFVKLWK 903
LAVS +G VASASHD+F+KLWK
Sbjct: 869 LAVSAASGLVASASHDRFIKLWK 891
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515484|ref|XP_003526430.1| PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1221 bits (3160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 613/750 (81%), Positives = 656/750 (87%), Gaps = 25/750 (3%)
Query: 172 RDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGE 231
RD HLLNG+ NGL+GN PGTANA+AT+MYEE+LKLP+ RDSLDDAA KQRFGE
Sbjct: 150 RDRPHLLNGSANGLVGN-------PGTANALATKMYEERLKLPLQRDSLDDAATKQRFGE 202
Query: 232 NMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPV 291
NMGQLLDPNHA +KSAAA GQPSGQVLHG AGGMSPQVQAR+QQLPGST DIK EI+PV
Sbjct: 203 NMGQLLDPNHAPILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPV 262
Query: 292 LNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQ 351
LNPRA GPEGSLMG+PGSN G NNLTLKGWPLTGLE LRSGLLQQQKPF+QAPQPFHQ+Q
Sbjct: 263 LNPRAVGPEGSLMGMPGSNPGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQ 322
Query: 352 MLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPL 410
MLTPQHQQ L+LAQQNL SPSAS+ESRR RMLLNNR++ L KDGLSN VGDVVSNVGSPL
Sbjct: 323 MLTPQHQQQLMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDGLSNPVGDVVSNVGSPL 382
Query: 411 PAGGHLLPRGDTDMLIKQQQQNSNPQQ---------------HTLSNQQSQSSNHNLHQQ 455
GG PRGDTDML+K + QQ HTLSNQQSQ+SNH++HQQ
Sbjct: 383 QGGGPPFPRGDTDMLVKLKLAQLQQQQQQQSSTNAQQQQLQQHTLSNQQSQTSNHSMHQQ 442
Query: 456 DKMGPAG--SVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPS 513
DK+G G SVT+DGSMSNSFRGNDQVSKNQ GRKRKQP SSSGPANSSGTANT GPSPS
Sbjct: 443 DKVGGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSSGTANTTGPSPS 502
Query: 514 SAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADM 573
SAPSTPSTHTPGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+AD+
Sbjct: 503 SAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADV 562
Query: 574 DRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 633
DR VEDGSLD+NVESFLSHDDTDPRD GR MDVS+GF+F + NSVRASTSKV CCHFSS
Sbjct: 563 DRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVSCCHFSS 622
Query: 634 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 693
DGKLLA+GGHDKK VLW+TD+LK K LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD
Sbjct: 623 DGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 682
Query: 694 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 753
DNPGYSLRTF GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT Q
Sbjct: 683 VDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQ 742
Query: 754 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV 813
MRFQP LGRYLAAAAEN+VSI D ETQ CR SL+GHTKP+ VCWDPSGELLASVSEDSV
Sbjct: 743 MRFQPRLGRYLAAAAENIVSIFDVETQVCRYSLKGHTKPVVCVCWDPSGELLASVSEDSV 802
Query: 814 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 873
RVWT+GSGS+GECVHELSCNGNKFH VFHPTYPSLLVIGCYQSLELWNMSENKTMTL+A
Sbjct: 803 RVWTLGSGSDGECVHELSCNGNKFHKSVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSA 862
Query: 874 HEGLIAALAVSTETGYVASASHDKFVKLWK 903
H+GLI +LAVST G VASASHDKF+KLWK
Sbjct: 863 HDGLITSLAVSTVNGLVASASHDKFLKLWK 892
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 903 | ||||||
| DICTYBASE|DDB_G0282189 | 579 | tupA "transcriptional represso | 0.400 | 0.625 | 0.293 | 1.4e-25 | |
| ASPGD|ASPL0000006214 | 434 | AN6385 [Emericella nidulans (t | 0.280 | 0.582 | 0.311 | 4.3e-24 | |
| TAIR|locus:2060560 | 554 | LIS "AT2G41500" [Arabidopsis t | 0.331 | 0.539 | 0.276 | 5.1e-24 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.294 | 0.195 | 0.294 | 7.8e-24 | |
| UNIPROTKB|Q8N136 | 415 | WDR69 "Outer row dynein assemb | 0.252 | 0.549 | 0.307 | 8.4e-24 | |
| UNIPROTKB|Q5M786 | 334 | wdr5 "WD repeat-containing pro | 0.304 | 0.823 | 0.262 | 1.3e-23 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.295 | 0.797 | 0.265 | 2.8e-23 | |
| UNIPROTKB|Q0P593 | 415 | WDR69 "Outer row dynein assemb | 0.244 | 0.532 | 0.306 | 7.5e-23 | |
| UNIPROTKB|G3N3E5 | 308 | WDR5 "WD repeat-containing pro | 0.265 | 0.779 | 0.275 | 1.6e-22 | |
| UNIPROTKB|Q2KIG2 | 334 | WDR5 "WD repeat-containing pro | 0.265 | 0.718 | 0.275 | 1.6e-22 |
| DICTYBASE|DDB_G0282189 tupA "transcriptional repressor TUP1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 117/399 (29%), Positives = 183/399 (45%)
Query: 529 SMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVES 588
S P+L + P M G + +G S +N ++ +L + DM+ + E+ + E
Sbjct: 191 SFPSLSPLDSNRHPKEM-GNNMSGNSMSMNN---NNNNLNKKPDMEEVKEEDRRRHDTEM 246
Query: 589 FLSHDDTDPRD-AGGRGMDVSQGFSFKEANSVRASTSKVICC-HFSSDGKLLATGGHDKK 646
+ D G V + ++++ ++ V+CC +FS+DGK LATG + +
Sbjct: 247 SEENGKEKGTDWLVGYNPSVQTNLNIDLLHNLQHNS--VVCCVNFSNDGKYLATGCN-RS 303
Query: 647 AVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 701
A ++ DT K + S I V FSP LAT + DKTV+VWD
Sbjct: 304 AQIYDVDTGKKVHAFVDESEKDGDLYIRSVCFSPDGNYLATGAEDKTVKVWDIHTKKIQ- 362
Query: 702 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------KGGTAQM 754
TF GH + SLD+ + I S GD + + W I G C K G +
Sbjct: 363 HTFYGHELDIYSLDYSSD-GRFIVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNGVTSV 421
Query: 755 RFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S 812
P GR +AA + +N+V + DA+T +GH + SV + P G+ LAS S D S
Sbjct: 422 AMSPD-GRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASGSLDKS 480
Query: 813 VRVWTV-GSGSEGECVHELSCNGNKFH--SCVFHPTYPSLLVIGCY-QSLELWNMSENKT 868
+++W + GS S C + NG+K S F P S L+ G +S++ W+ T
Sbjct: 481 LKLWDLSGSRSRSRC--RATFNGHKDFVLSVAFSPD-GSWLISGSKDRSVQFWDPRNGTT 537
Query: 869 -MTLTAHEGLIAALAVSTET---GYVASASHDKFVKLWK 903
M L H+ + ++A+S + G A+ S D +LWK
Sbjct: 538 HMMLQGHKNSVISVALSPKNNSHGVFATGSGDFRSRLWK 576
|
|
| ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 4.3e-24, P = 4.3e-24
Identities = 87/279 (31%), Positives = 137/279 (49%)
Query: 631 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 690
FS DG+LLA+G +D LW + K LE HSS + V FSP+ LA+ S D T++
Sbjct: 49 FSPDGRLLASGSNDTTIKLWDPASGGLKQTLEGHSSSVQSVAFSPNGQLLASGSSDTTIK 108
Query: 691 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 750
+W++ + T GHS V S+ F PN G++ W+ GS +G
Sbjct: 109 LWNSASDSLK-HTMEGHSDRVESVAFSPN-----------GQL--WNPAIGSLKHTIEGH 154
Query: 751 T---AQMRFQPHLGRYLAA-AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 806
+ + F P G+ LA+ +AE + + D+ T + +L GH+ + + + P G LLA
Sbjct: 155 SDWVLSVAFSPD-GQLLASGSAEKTIKLWDSATCGLKHTLGGHSNWVLPLVFSPDGRLLA 213
Query: 807 SVSEDS-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS-LELWNMS 864
S S D+ +++W SGS H L + NK S F P LL G + ++LW+ +
Sbjct: 214 SGSNDATIKLWDPPSGS---LKHTLEGHSNKIESLAFSPN-GQLLASGSSDATIKLWDTA 269
Query: 865 ENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902
TL H ++ ++ S ++ + S S D +KLW
Sbjct: 270 TGSFRHTLKGHSDMVLSVVFSPDSQLLESGSGDNTIKLW 308
|
|
| TAIR|locus:2060560 LIS "AT2G41500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 5.1e-24, Sum P(2) = 5.1e-24
Identities = 88/318 (27%), Positives = 144/318 (45%)
Query: 598 RDAGGRGMDVSQGFSFKEANSVRASTSK------VICCHFSSDGKLLATGGHDKKAVLWH 651
RD MD ++ K A + S + C FS DGK+LAT LW
Sbjct: 224 RDDPDEDMDAETKWALKHAKHMALDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWE 283
Query: 652 TDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS 710
+ + L++H TDV FSP LAT+S D+T ++W D G L+TF GH
Sbjct: 284 MPQVTNTIAVLKDHKERATDVVFSPVDDCLATASADRTAKLWKTD--GTLLQTFEGHLDR 341
Query: 711 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAA 767
+ + FHP+ + + D R W IN G+ + +G + + FQ +
Sbjct: 342 LARVAFHPS-GKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCG 400
Query: 768 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGEC 826
+++ + D T L QGH KP+ SV + P+G LAS ED+ R+W +
Sbjct: 401 LDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKS--- 457
Query: 827 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSE-NKTMTLTAHEGLIAALAVS 884
++ + + N + P L Y + +W+ + + +L HE +A+L ++
Sbjct: 458 LYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDIT 517
Query: 885 TETGYVASASHDKFVKLW 902
++ +A+ SHD+ +KLW
Sbjct: 518 ADSSCIATVSHDRTIKLW 535
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 7.8e-24, Sum P(2) = 7.8e-24
Identities = 82/278 (29%), Positives = 138/278 (49%)
Query: 631 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 690
FS DGK L +G +D +W T + L+ HS + + FSP LA+ S+D T+
Sbjct: 758 FSPDGKQLVSGSYDDTVKIWDPATGELLQTLDGHSGTVESLAFSPDGKLLASGSYDNTID 817
Query: 691 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 750
+WD+ G L+TF GH S+ S+ F P+ +L + D D I+ W + G +
Sbjct: 818 LWDSAT-GELLQTFEGHPHSIWSVAFAPDGKELASASD-DSTIKIWDLATGELQQTLDSH 875
Query: 751 TAQMR---FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 806
+ +R F P G+ LA+++ ++ + + + T + SL+G + + SV + P G+ LA
Sbjct: 876 SQSVRSVAFSPD-GKLLASSSLDSTIKVWNPATGELQQSLEGRSGWVKSVAFSPDGKKLA 934
Query: 807 SVSE-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 865
S SE ++V++W +G E + L + S F P L +++LWN +
Sbjct: 935 SGSEKNTVKLWNPATG---ELLQTLEGHSQSVRSVAFSPDGKQLASSSSDTTIKLWNSTT 991
Query: 866 NKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902
+ T H+ I A+A S + ++ S S D +KLW
Sbjct: 992 GELQQTFKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLW 1029
|
|
| UNIPROTKB|Q8N136 WDR69 "Outer row dynein assembly protein 16 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 294 (108.6 bits), Expect = 8.4e-24, P = 8.4e-24
Identities = 74/241 (30%), Positives = 114/241 (47%)
Query: 617 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 676
++ R T++++C F+ L+ATG D A LW + L HS+ I + F+ S
Sbjct: 171 HTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTS 230
Query: 677 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRY 735
R+ T SFD TV VWDAD G + +GH A + S F N D LI + D +
Sbjct: 231 GDRIITGSFDHTVVVWDADT-GRKVNILIGHCAEISSASF--NWDCSLILTGSMDKTCKL 287
Query: 736 WSINNGSCTRVFKGGTAQMRFQ--PHLGRYLA-AAAENVVSILDAETQACRLSLQGHTKP 792
W NG C G ++ + G+ +A A+A+ I A T+ C L+GH
Sbjct: 288 WDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGE 347
Query: 793 IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 851
I + ++P G LL S+ + R+W G+C+ L + ++ SC F+ Y +V
Sbjct: 348 ISKISFNPQGNHLLTGSSDKTARIW---DAQTGQCLQVLEGHTDEIFSCAFN--YKGNIV 402
Query: 852 I 852
I
Sbjct: 403 I 403
|
|
| UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 281 (104.0 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 77/293 (26%), Positives = 143/293 (48%)
Query: 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 682
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 683 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 742
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 105 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 743 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 798
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 799 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF---HPTYPSLLVIGC 854
P+G+ +LA+ ++++++W S+G+C+ +C+ N+ + C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTCHKNEKY-CIFANFSVTGGKWIVSGS 278
Query: 855 YQSLE-LWNMSENKTMT-LTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 903
+L +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 279 EDNLVYIWNLQTKEVVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
|
| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 278 (102.9 bits), Expect = 2.8e-23, P = 2.8e-23
Identities = 76/286 (26%), Positives = 139/286 (48%)
Query: 631 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 690
FS DGK LA+ DK +W K + LE H I+D+ +S + ++S DKT++
Sbjct: 54 FSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASDDKTIK 113
Query: 691 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 750
+WD ++ G ++T GH V + F+P + +LI S D +R W +N G CT++
Sbjct: 114 IWDVES-GKMVKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGECTKMISAH 171
Query: 751 TAQMRFQPHLGR----YLAAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGE-L 804
+ + H R ++ + + V I D T Q K + V + P+G+ +
Sbjct: 172 SDPVT-GVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGKFV 230
Query: 805 LASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP---TYPSLLVIGCYQSL-EL 860
LA ++++R+W+ + + C+ + + N+ + C+F T +V G +L +
Sbjct: 231 LAGTLDNTLRLWSYNNNKK--CLKTYTGHKNEKY-CIFSTFSVTCGKWIVTGSEDNLIYI 287
Query: 861 WNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 903
+N+ + + TL HE ++ +A +AS + D+ VK+WK
Sbjct: 288 YNLQTREIVQTLAGHEDVVLTVACHPTENIIASGALEKDRSVKIWK 333
|
|
| UNIPROTKB|Q0P593 WDR69 "Outer row dynein assembly protein 16 homolog" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 287 (106.1 bits), Expect = 7.5e-23, P = 7.5e-23
Identities = 71/232 (30%), Positives = 112/232 (48%)
Query: 617 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 676
++ R T++++C F+ L+ATG D A LW + + L HS+ I + F+ S
Sbjct: 171 HTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTS 230
Query: 677 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRY 735
R+ T SFD TV VW+AD G + T +GH A + S F N D LI + D +
Sbjct: 231 GNRIITGSFDHTVTVWEADT-GRKVYTLIGHCAEISSAVF--NWDCSLILTGSMDKTCKL 287
Query: 736 WSINNGSCTRVFKGGTAQMRFQ--PHLGRYLA-AAAENVVSILDAETQACRLSLQGHTKP 792
W NG C G ++ + G+ +A A+A+ I A T+ C L+GH
Sbjct: 288 WDAVNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGE 347
Query: 793 IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 843
I + ++P G LL S+ + R+W G+C+ L + ++ SC F+
Sbjct: 348 ISKISFNPQGNRLLTGSSDKTARIW---DAQTGQCLQVLEGHTDEIFSCAFN 396
|
|
| UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 70/254 (27%), Positives = 125/254 (49%)
Query: 658 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 717
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 70
Query: 718 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 774
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 71 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 775 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 833
D +T C +L H+ P+ +V ++ G L+ S S D + R+W SG +C+ L +
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDD 186
Query: 834 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAALAVSTETG-- 888
N S V F P +L +L+LW+ S+ K + T T H+ A + TG
Sbjct: 187 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 246
Query: 889 YVASASHDKFVKLW 902
++ S S D V +W
Sbjct: 247 WIVSGSEDNLVYIW 260
|
|
| UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 70/254 (27%), Positives = 125/254 (49%)
Query: 658 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 717
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 96
Query: 718 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 774
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 97 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 775 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 833
D +T C +L H+ P+ +V ++ G L+ S S D + R+W SG +C+ L +
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDD 212
Query: 834 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAALAVSTETG-- 888
N S V F P +L +L+LW+ S+ K + T T H+ A + TG
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 272
Query: 889 YVASASHDKFVKLW 902
++ S S D V +W
Sbjct: 273 WIVSGSEDNLVYIW 286
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FUY2 | LEUNG_ARATH | No assigned EC number | 0.7348 | 0.7995 | 0.7755 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_LG_VI1732 | hypothetical protein (894 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 903 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-63 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-47 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-40 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-32 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-30 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-27 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-26 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 8e-17 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 5e-15 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-14 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 1e-14 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 2e-14 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 4e-14 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 6e-14 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 7e-14 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 7e-14 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 2e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 2e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 2e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-13 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 9e-13 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 2e-12 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 2e-12 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 3e-12 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 4e-12 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 5e-12 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 5e-12 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 1e-11 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 2e-11 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 3e-11 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 3e-11 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 3e-11 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 3e-11 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 5e-11 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 1e-10 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 2e-10 | |
| PRK12757 | 256 | PRK12757, PRK12757, cell division protein FtsN; Pr | 3e-10 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-09 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 2e-09 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 2e-09 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 5e-09 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 7e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-09 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 9e-09 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 1e-08 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 2e-08 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 2e-08 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 2e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-08 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 3e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-08 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 4e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 4e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 4e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 5e-08 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 5e-08 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 5e-08 | |
| PRK12757 | 256 | PRK12757, PRK12757, cell division protein FtsN; Pr | 6e-08 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 6e-08 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 6e-08 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 7e-08 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 8e-08 | |
| PRK12757 | 256 | PRK12757, PRK12757, cell division protein FtsN; Pr | 9e-08 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 9e-08 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 1e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-07 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 1e-07 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 2e-07 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 2e-07 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 2e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-07 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 2e-07 | |
| smart00818 | 165 | smart00818, Amelogenin, Amelogenins, cell adhesion | 2e-07 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 3e-07 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 3e-07 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 3e-07 | |
| TIGR04211 | 198 | TIGR04211, SH3_and_anchor, SH3 domain protein | 3e-07 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 4e-07 | |
| pfam03280 | 189 | pfam03280, Lipase_chap, Proteobacterial lipase cha | 4e-07 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 4e-07 | |
| PRK14474 | 250 | PRK14474, PRK14474, F0F1 ATP synthase subunit B; P | 4e-07 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 5e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 5e-07 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 6e-07 | |
| COG3264 | 835 | COG3264, COG3264, Small-conductance mechanosensiti | 6e-07 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 7e-07 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 8e-07 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 1e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-06 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 3e-06 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 3e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 3e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 3e-06 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 3e-06 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 3e-06 | |
| cd00261 | 110 | cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors | 3e-06 | |
| COG1570 | 440 | COG1570, XseA, Exonuclease VII, large subunit [DNA | 3e-06 | |
| pfam14282 | 106 | pfam14282, FlxA, FlxA-like protein | 3e-06 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 3e-06 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 3e-06 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 4e-06 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 4e-06 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 6e-06 | |
| COG1570 | 440 | COG1570, XseA, Exonuclease VII, large subunit [DNA | 6e-06 | |
| pfam13904 | 261 | pfam13904, DUF4207, Domain of unknown function (DU | 6e-06 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 7e-06 | |
| smart00818 | 165 | smart00818, Amelogenin, Amelogenins, cell adhesion | 8e-06 | |
| pfam02050 | 122 | pfam02050, FliJ, Flagellar FliJ protein | 9e-06 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 1e-05 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 1e-05 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 1e-05 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 1e-05 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 1e-05 | |
| pfam02050 | 122 | pfam02050, FliJ, Flagellar FliJ protein | 1e-05 | |
| pfam12118 | 261 | pfam12118, SprA-related, SprA-related family | 1e-05 | |
| COG2959 | 391 | COG2959, HemX, Uncharacterized enzyme of heme bios | 1e-05 | |
| COG3115 | 324 | COG3115, ZipA, Cell division protein [Cell divisio | 1e-05 | |
| pfam08513 | 27 | pfam08513, LisH, LisH | 1e-05 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 2e-05 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 2e-05 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-05 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 2e-05 | |
| PRK14474 | 250 | PRK14474, PRK14474, F0F1 ATP synthase subunit B; P | 2e-05 | |
| COG2959 | 391 | COG2959, HemX, Uncharacterized enzyme of heme bios | 2e-05 | |
| COG3115 | 324 | COG3115, ZipA, Cell division protein [Cell divisio | 2e-05 | |
| pfam12203 | 92 | pfam12203, HDAC4_Gln, Glutamine rich N terminal do | 2e-05 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 3e-05 | |
| PRK11448 | 1123 | PRK11448, hsdR, type I restriction enzyme EcoKI su | 3e-05 | |
| PRK04239 | 110 | PRK04239, PRK04239, hypothetical protein; Provisio | 3e-05 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 3e-05 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 3e-05 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 4e-05 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 4e-05 | |
| PRK04239 | 110 | PRK04239, PRK04239, hypothetical protein; Provisio | 4e-05 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 4e-05 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 5e-05 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 5e-05 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 5e-05 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 5e-05 | |
| PLN03029 | 222 | PLN03029, PLN03029, type-a response regulator prot | 5e-05 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 6e-05 | |
| PRK01741 | 332 | PRK01741, PRK01741, cell division protein ZipA; Pr | 6e-05 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 6e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 7e-05 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 7e-05 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 7e-05 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 7e-05 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 8e-05 | |
| PRK11448 | 1123 | PRK11448, hsdR, type I restriction enzyme EcoKI su | 8e-05 | |
| pfam03938 | 157 | pfam03938, OmpH, Outer membrane protein (OmpH-like | 8e-05 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 8e-05 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 9e-05 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 9e-05 | |
| pfam05914 | 379 | pfam05914, RIB43A, RIB43A | 9e-05 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 1e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 1e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-04 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 1e-04 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 1e-04 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 1e-04 | |
| PLN03029 | 222 | PLN03029, PLN03029, type-a response regulator prot | 1e-04 | |
| pfam03938 | 157 | pfam03938, OmpH, Outer membrane protein (OmpH-like | 1e-04 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 1e-04 | |
| pfam10595 | 349 | pfam10595, UPF0564, Uncharacterized protein family | 1e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| PRK14474 | 250 | PRK14474, PRK14474, F0F1 ATP synthase subunit B; P | 2e-04 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 2e-04 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 2e-04 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 2e-04 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 2e-04 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 2e-04 | |
| PRK01741 | 332 | PRK01741, PRK01741, cell division protein ZipA; Pr | 2e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 2e-04 | |
| PRK06800 | 228 | PRK06800, fliH, flagellar assembly protein H; Vali | 2e-04 | |
| PRK10350 | 145 | PRK10350, PRK10350, hypothetical protein; Provisio | 2e-04 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 3e-04 | |
| cd00261 | 110 | cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors | 3e-04 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 3e-04 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 3e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 3e-04 | |
| pfam07321 | 152 | pfam07321, YscO, Type III secretion protein YscO | 3e-04 | |
| PRK10863 | 216 | PRK10863, PRK10863, anti-RNA polymerase sigma fact | 3e-04 | |
| COG1322 | 448 | COG1322, COG1322, Predicted nuclease of restrictio | 3e-04 | |
| TIGR02223 | 298 | TIGR02223, ftsN, cell division protein FtsN | 3e-04 | |
| cd10149 | 90 | cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich | 3e-04 | |
| cd12191 | 90 | cd12191, gal11_coact, gall11 coactivator domain | 3e-04 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 4e-04 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 4e-04 | |
| COG1570 | 440 | COG1570, XseA, Exonuclease VII, large subunit [DNA | 4e-04 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 4e-04 | |
| PRK06800 | 228 | PRK06800, fliH, flagellar assembly protein H; Vali | 4e-04 | |
| pfam10956 | 104 | pfam10956, DUF2756, Protein of unknown function (D | 4e-04 | |
| pfam04684 | 508 | pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorga | 4e-04 | |
| pfam09831 | 177 | pfam09831, DUF2058, Uncharacterized protein conser | 4e-04 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 5e-04 | |
| PRK11448 | 1123 | PRK11448, hsdR, type I restriction enzyme EcoKI su | 5e-04 | |
| PLN03029 | 222 | PLN03029, PLN03029, type-a response regulator prot | 5e-04 | |
| smart00935 | 140 | smart00935, OmpH, Outer membrane protein (OmpH-lik | 5e-04 | |
| PRK11637 | 428 | PRK11637, PRK11637, AmiB activator; Provisional | 5e-04 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 6e-04 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 6e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 6e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 6e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 6e-04 | |
| pfam10956 | 104 | pfam10956, DUF2756, Protein of unknown function (D | 6e-04 | |
| smart00935 | 140 | smart00935, OmpH, Outer membrane protein (OmpH-lik | 6e-04 | |
| cd10163 | 90 | cd10163, ClassIIa_HDAC9_Gln-rich-N, Glutamine-rich | 6e-04 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 7e-04 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 7e-04 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 7e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 7e-04 | |
| cd10149 | 90 | cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich | 7e-04 | |
| COG0845 | 372 | COG0845, AcrA, Membrane-fusion protein [Cell envel | 7e-04 | |
| pfam11932 | 250 | pfam11932, DUF3450, Protein of unknown function (D | 7e-04 | |
| TIGR00237 | 432 | TIGR00237, xseA, exodeoxyribonuclease VII, large s | 7e-04 | |
| PRK05687 | 246 | PRK05687, fliH, flagellar assembly protein H; Vali | 7e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 8e-04 | |
| COG5624 | 505 | COG5624, TAF61, Transcription initiation factor TF | 9e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 9e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.001 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.001 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.001 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.001 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 0.001 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.001 | |
| PRK01741 | 332 | PRK01741, PRK01741, cell division protein ZipA; Pr | 0.001 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 0.001 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.001 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.001 | |
| PRK10350 | 145 | PRK10350, PRK10350, hypothetical protein; Provisio | 0.001 | |
| cd12191 | 90 | cd12191, gal11_coact, gall11 coactivator domain | 0.001 | |
| TIGR00237 | 432 | TIGR00237, xseA, exodeoxyribonuclease VII, large s | 0.001 | |
| pfam07271 | 279 | pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | 0.001 | |
| pfam05044 | 908 | pfam05044, Prox1, Homeobox prospero-like protein ( | 0.001 | |
| pfam01984 | 105 | pfam01984, dsDNA_bind, Double-stranded DNA-binding | 0.001 | |
| pfam01984 | 105 | pfam01984, dsDNA_bind, Double-stranded DNA-binding | 0.001 | |
| COG5028 | 861 | COG5028, COG5028, Vesicle coat complex COPII, subu | 0.001 | |
| PRK05733 | 172 | PRK05733, PRK05733, single-stranded DNA-binding pr | 0.001 | |
| PRK05733 | 172 | PRK05733, PRK05733, single-stranded DNA-binding pr | 0.001 | |
| pfam11068 | 131 | pfam11068, DUF2869, Protein of unknown function (D | 0.001 | |
| PRK00191 | 84 | PRK00191, tatA, twin arginine translocase protein | 0.001 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 0.001 | |
| pfam11180 | 192 | pfam11180, DUF2968, Protein of unknown function (D | 0.001 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 0.002 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.002 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.002 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.002 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.002 | |
| COG2959 | 391 | COG2959, HemX, Uncharacterized enzyme of heme bios | 0.002 | |
| pfam12203 | 92 | pfam12203, HDAC4_Gln, Glutamine rich N terminal do | 0.002 | |
| pfam03938 | 157 | pfam03938, OmpH, Outer membrane protein (OmpH-like | 0.002 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.002 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 0.002 | |
| pfam10956 | 104 | pfam10956, DUF2756, Protein of unknown function (D | 0.002 | |
| TIGR00237 | 432 | TIGR00237, xseA, exodeoxyribonuclease VII, large s | 0.002 | |
| PRK00191 | 84 | PRK00191, tatA, twin arginine translocase protein | 0.002 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 0.002 | |
| PRK01294 | 336 | PRK01294, PRK01294, lipase chaperone; Provisional | 0.002 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 0.002 | |
| pfam12795 | 239 | pfam12795, MscS_porin, Mechanosensitive ion channe | 0.002 | |
| cd10164 | 97 | cd10164, ClassIIa_HDAC5_Gln-rich-N, Glutamine-rich | 0.002 | |
| pfam11244 | 89 | pfam11244, Med25_NR-box, Mediator complex subunit | 0.002 | |
| TIGR02473 | 141 | TIGR02473, flagell_FliJ, flagellar export protein | 0.002 | |
| pfam06625 | 122 | pfam06625, DUF1151, Protein of unknown function (D | 0.002 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 0.003 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.003 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.003 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.003 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 0.003 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 0.003 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.003 | |
| COG1322 | 448 | COG1322, COG1322, Predicted nuclease of restrictio | 0.003 | |
| PRK00191 | 84 | PRK00191, tatA, twin arginine translocase protein | 0.003 | |
| pfam02948 | 174 | pfam02948, Amelogenin, Amelogenin | 0.003 | |
| TIGR02302 | 851 | TIGR02302, aProt_lowcomp, TIGR02302 family protein | 0.003 | |
| pfam14362 | 297 | pfam14362, DUF4407, Domain of unknown function (DU | 0.003 | |
| TIGR03789 | 239 | TIGR03789, pdsO, proteobacterial sortase system Om | 0.003 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.003 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 0.004 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 0.004 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 0.004 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 0.004 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 0.004 | |
| TIGR02223 | 298 | TIGR02223, ftsN, cell division protein FtsN | 0.004 | |
| PRK00191 | 84 | PRK00191, tatA, twin arginine translocase protein | 0.004 | |
| pfam12795 | 239 | pfam12795, MscS_porin, Mechanosensitive ion channe | 0.004 | |
| TIGR02302 | 851 | TIGR02302, aProt_lowcomp, TIGR02302 family protein | 0.004 | |
| COG3679 | 118 | COG3679, COG3679, Regulatory protein involved in c | 0.004 | |
| PRK09010 | 177 | PRK09010, PRK09010, single-stranded DNA-binding pr | 0.004 | |
| pfam03249 | 502 | pfam03249, TSA, Type specific antigen | 0.004 | |
| COG3073 | 213 | COG3073, RseA, Negative regulator of sigma E activ | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 216 bits (551), Expect = 1e-63
Identities = 89/293 (30%), Positives = 147/293 (50%), Gaps = 16/293 (5%)
Query: 619 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 678
++ T V C FS DGKLLATG D +W +T + L+ H+ + DV S
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 679 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 738
LA+ S DKT+R+WD + G +RT GH++ V S+ F P+ ++ S D I+ W +
Sbjct: 65 YLASGSSDKTIRLWDLET-GECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDV 122
Query: 739 NNGSCTRVFKGGTAQ---MRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPID 794
G C +G T + F P G ++A++ + + + D T C +L GHT ++
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181
Query: 795 SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 853
SV + P GE L S S D ++++W + S G+C+ L + N +S F P L+
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPD--GYLLAS 236
Query: 854 CY--QSLELWNM-SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903
++ +W++ + TL+ H + +LA S + +AS S D +++W
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 2e-47
Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 8/210 (3%)
Query: 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 671
+ + ++ TS V FS DG++L++ DK +W +T K T L H+ + V
Sbjct: 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141
Query: 672 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 731
FSP +A+SS D T+++WD G + T GH+ V S+ F P+ + L S DG
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGEKL-LSSSSDG 199
Query: 732 EIRYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQ 787
I+ W ++ G C +G + F P G LA+ +E + + D T C +L
Sbjct: 200 TIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGSEDGTIRVWDLRTGECVQTLS 258
Query: 788 GHTKPIDSVCWDPSGELLASVSED-SVRVW 816
GHT + S+ W P G+ LAS S D ++R+W
Sbjct: 259 GHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 153 bits (387), Expect = 9e-40
Identities = 89/300 (29%), Positives = 136/300 (45%), Gaps = 18/300 (6%)
Query: 619 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRF-SP 675
+R + FS DG+LL +G D LW D K+ H S ++ + SP
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120
Query: 676 SMPRLAT--SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 733
+ SS D TV++WD PG +RT GHS SV SL F P+ L DG I
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180
Query: 734 RYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAE-NVVSILDAET-QACRLSLQG 788
+ W + G G T + F P G +A+ + + + D T + R +L G
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240
Query: 789 HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 847
H+ + S + P G LLAS S D ++R+W + S S + LS + + S F P
Sbjct: 241 HSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSS--SLLRTLSGHSSSVLSVAFSPDGK 297
Query: 848 SLLVIGCYQSLELWNMSENK---TMTLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 903
L ++ LW++ K ++TL HEG +++L+ S + + S S D ++LW
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 2e-32
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 11/209 (5%)
Query: 700 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR---F 756
RT GH+ V + F P+ L+ + GDG I+ W + G R KG T +R
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 757 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV 815
+ +++ + + D ET C +L GHT + SV + P G +L+S S D +++V
Sbjct: 60 SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 816 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM-TLTA 873
W V G+C+ L + + +S F P + + +++LW++ K + TLT
Sbjct: 120 WDV---ETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTG 175
Query: 874 HEGLIAALAVSTETGYVASASHDKFVKLW 902
H G + ++A S + + S+S D +KLW
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 124 bits (310), Expect = 7e-30
Identities = 68/210 (32%), Positives = 97/210 (46%), Gaps = 5/210 (2%)
Query: 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITD 670
+ K S + S + FS DG LLA+G D LW + S L HSS +
Sbjct: 230 TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289
Query: 671 VRFSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDG 729
V FSP LA+ S D TVR+WD + S T GH V SL F P+ L+
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
Query: 730 DGEIRYWSINNGSCTRVFKGGTA--QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 787
DG IR W + G + +G + + F P + + + V + D T + +L
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409
Query: 788 GHTKPIDSVCWDPSGELLASVSED-SVRVW 816
GHT + S+ + P G+ LAS S D ++R+W
Sbjct: 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 3e-27
Identities = 77/313 (24%), Positives = 134/313 (42%), Gaps = 24/313 (7%)
Query: 611 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-------LKSKTNLEE 663
S + + K + LL+ G + +L + S L
Sbjct: 4 NSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRG 63
Query: 664 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDF-HPNKD 721
H IT + FSP L + S D T+++WD DN +++ G H +SV L P+ +
Sbjct: 64 HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN 123
Query: 722 DLICSC-DGDGEIRYWSINN-GSCTRVFKGGTA---QMRFQPHLGRYLAAAAE--NVVSI 774
++ + DG ++ W ++ G R +G + + F P G+ LA+ + + +
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKL 182
Query: 775 LDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSC 832
D T +L GHT P+ S+ + P G L+AS S D ++R+W + +G LS
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK--LLRSTLSG 240
Query: 833 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--TMTLTAHEGLIAALAVSTETGYV 890
+ + S F P L ++ LW++ + TL+ H + ++A S + +
Sbjct: 241 HSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299
Query: 891 ASASHDKFVKLWK 903
AS S D V+LW
Sbjct: 300 ASGSSDGTVRLWD 312
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 113 bits (282), Expect = 3e-26
Identities = 78/287 (27%), Positives = 115/287 (40%), Gaps = 48/287 (16%)
Query: 622 STSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPR 679
T V FS DG L+A+G D LW T K + L HS + FSP
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSL 255
Query: 680 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 739
LA+ S D T+R+WD + LRT GHS+SV+S+ F P+ L S DG +R W +
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA-SGSSDGTVRLWDLE 314
Query: 740 NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 799
G L+L+GH P+ S+ +
Sbjct: 315 TGKLLSS-------------------------------------LTLKGHEGPVSSLSFS 337
Query: 800 PSGELLA-SVSEDS-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 857
P G LL S+D +R+W + G+ + L + S F P + +
Sbjct: 338 PDGSLLVSGGSDDGTIRLWDL---RTGKPLKTLEG-HSNVLSVSFSPDGRVVSSGSTDGT 393
Query: 858 LELWNMSENK-TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903
+ LW++S L H + +L S + +AS S D ++LW
Sbjct: 394 VRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440
|
Length = 466 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 8e-17
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 89 QQQQQQQQQQQQ---------QQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
Q Q Q + QQ ++QQ S + Q+Q Q+ + Q QQ + Q
Sbjct: 577 QGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGEQQGQQGQGGQGQGQP 636
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQ--QPQQQQQRRDGAHLLNG 180
Q QQ Q QQQ QQ Q Q +QQ R + G
Sbjct: 637 GQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGG 679
|
Length = 820 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 5e-15
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+ Q+Q Q+ +QQ QQ Q Q Q QQ QQ Q Q QQ QQ Q
Sbjct: 609 RDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQ------------QQGQQGQGGQ 656
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQR 171
Q ++ QQ + + +Q+
Sbjct: 657 GGQGSLAER--QQALRDELGRQRGG 679
|
Length = 820 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 671
+ K ++R + V FS DG LLA+G D +W T + L H++ +T +
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267
Query: 672 RFSPSMPRLATSSFDKTVRVWD 693
+SP RLA+ S D T+R+WD
Sbjct: 268 AWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-14
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ--QQQQQLQMQQILLQRHAQQQQQHQQ 144
+EQ Q+ +QQ QQ Q Q Q P QQ QQ Q QQ QQ Q Q A++QQ +
Sbjct: 612 QEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRD 671
Query: 145 QHQQQQQQQQQPPQQPQQQQPQ 166
+ +Q+ + +
Sbjct: 672 ELGRQRGGLPGMGGEAGEAARD 693
|
Length = 820 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-14
Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 22/106 (20%)
Query: 86 AREQQQQQQQQ----QQQQQQQQQQSQQPPHQQQQQQ-----QQQQQ-------QLQMQQ 129
A++ +Q QQ Q Q Q QS+ QQ + ++QQ LQ Q
Sbjct: 559 AQQLLEQLQQMMENLQVTQGGQGGQSEM---QQAMEGLGETLREQQGLSDETFRDLQEQF 615
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+QQ Q Q Q Q Q Q QQ Q QQ QQ Q G
Sbjct: 616 ---NAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGG 658
|
Length = 820 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 4e-14
Identities = 30/104 (28%), Positives = 33/104 (31%), Gaps = 6/104 (5%)
Query: 79 IETQLIKAREQQQQQ---QQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRH 135
Q + A Q Q Q QQ QQ Q P QQ Q Q QQ +
Sbjct: 215 QPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274
Query: 136 A---QQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
Q Q Q Q PPQQPQ QQ Q +
Sbjct: 275 QPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGP 318
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 6e-14
Identities = 30/102 (29%), Positives = 36/102 (35%), Gaps = 1/102 (0%)
Query: 72 SEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQL-QMQQI 130
S+ A + + QQ Q QQ QPP QQQQ Q Q Q Q Q
Sbjct: 224 SQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPT 283
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q Q QQ Q Q QQ+ PQ ++Q
Sbjct: 284 PHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLV 325
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 7e-14
Identities = 32/137 (23%), Positives = 44/137 (32%), Gaps = 46/137 (33%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQ----------------------------- 114
++ +Q Q+ QQ Q Q S + Q
Sbjct: 509 MRQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQRMMDRIEELMESGRRAEAQQLLEQLQQ 568
Query: 115 -----QQQQQQQQQQLQMQQIL--LQRHAQQQQ----------QHQQQHQQQQQQQQQPP 157
Q Q Q Q +MQQ + L ++QQ Q Q Q+ +QQ QQ
Sbjct: 569 MMENLQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGEQQGQQGQ 628
Query: 158 QQPQQQQPQQQQQRRDG 174
Q QP QQ Q+ G
Sbjct: 629 GGQGQGQPGQQGQQGQG 645
|
Length = 820 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 7e-14
Identities = 25/104 (24%), Positives = 28/104 (26%), Gaps = 12/104 (11%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ-- 147
Q Q Q QQPP QQ Q QQ+ QQQQ Q Q Q
Sbjct: 220 LPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP--QQQQQPPQPQAQPP 277
Query: 148 --------QQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTN 183
Q Q P P QQ ++
Sbjct: 278 PQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFR 321
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-13
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
EQQ QQ Q Q Q Q QQ QQ Q QQQ QQ Q Q L +R + + +Q
Sbjct: 619 RGEQQGQQGQGGQGQGQPGQQGQQG--QGQQQGQQGQGGQGGQGSLAERQQALRDELGRQ 676
Query: 146 HQQQQQQQQQPPQQPQQ 162
+ + +
Sbjct: 677 RGGLPGMGGEAGEAARD 693
|
Length = 820 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-13
Identities = 28/83 (33%), Positives = 30/83 (36%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+ QQ +Q Q Q P Q Q QQ Q L QQ QQ
Sbjct: 187 RQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQP 246
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQ 169
Q QQ PP PQ Q QQQ
Sbjct: 247 QFPGLSQQMPPPPPQPPQQQQQP 269
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-13
Identities = 23/88 (26%), Positives = 25/88 (28%), Gaps = 3/88 (3%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
+ Q +Q Q QQ Q QQ LQ Q Q
Sbjct: 204 PQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP 263
Query: 146 HQQQQ---QQQQQPPQQPQQQQPQQQQQ 170
QQQQ Q Q PPQ P Q
Sbjct: 264 QQQQQPPQPQAQPPPQNQPTPHPGLPQG 291
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 3e-13
Identities = 25/103 (24%), Positives = 32/103 (31%)
Query: 73 EVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILL 132
++ +E QL + ++ Q Q QQ Q Q QQ +Q Q
Sbjct: 153 MLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPE 212
Query: 133 QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
Q QQ Q Q Q PQQP Q Q
Sbjct: 213 QVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQM 255
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 9e-13
Identities = 38/82 (46%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
Q Q QQQ Q QQ + Q QQQ Q QQQ QM Q AQ Q QQQ Q Q
Sbjct: 203 GGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQ 262
Query: 152 QQQQ---PPQQPQQQQPQQQQQ 170
QQ Q P QQQP QQQ
Sbjct: 263 PQQMQGGQMQVPMQQQPPQQQP 284
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-12
Identities = 32/155 (20%), Positives = 46/155 (29%), Gaps = 49/155 (31%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ-------------- 133
QQ QQ Q QQQ QQ Q Q ++QQ + +L Q+ L
Sbjct: 636 PGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMGGEAGEAARDAL 695
Query: 134 -------RHAQQ---------------------QQQHQQQHQQQQQQQQQPPQQPQQQQP 165
A++ ++ + + QQQ Q QQQ
Sbjct: 696 GRAGRAMGGAEEALGQGDLAEAVDRQGRALEALREGARALGEAMAQQQGQQQGGQGQQQG 755
Query: 166 QQQQQRRD-------GAHLLNGNTNGLLGNDSLMR 193
+Q RD G G+ + G R
Sbjct: 756 RQGGNGRDPLGRPRGGQGPDGGDRVKVPGEIDYQR 790
|
Length = 820 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-12
Identities = 22/85 (25%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
Q QQ +Q Q Q +Q Q QQ Q Q Q Q
Sbjct: 187 RQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPA---QPPLPPQLPQQPPPL 243
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQRR 172
QQ Q Q P QQQ++
Sbjct: 244 QQPQFPGLSQQMPPPPPQPPQQQQQ 268
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 3e-12
Identities = 19/76 (25%), Positives = 43/76 (56%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+QQQQ+ ++ ++Q+++++ QQ QQ+Q +Q++ Q+++ L Q++Q +
Sbjct: 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAK 125
Query: 147 QQQQQQQQQPPQQPQQ 162
Q +Q+Q +
Sbjct: 126 QAALKQKQAEEAAAKA 141
|
Length = 387 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 4e-12
Identities = 40/85 (47%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
QQ QQ QQQ QQ QQ P Q QQ QQ Q Q QQ Q Q Q QQ
Sbjct: 752 VQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV 811
Query: 148 QQQQQQQQPPQ----QPQQQQPQQQ 168
Q Q QQP Q QPQ QQPQQ
Sbjct: 812 APQPQYQQPQQPVAPQPQYQQPQQP 836
|
Length = 1355 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 5e-12
Identities = 25/88 (28%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ----QQQQQQLQMQQILLQRHAQQQQQHQQ 144
Q QQ Q QQ Q Q Q Q + Q QQ
Sbjct: 246 PQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLL 305
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
QQ Q QQ+ PQ +Q QQQR
Sbjct: 306 PLVQQPQGQQRGPQFREQLVQLSQQQRE 333
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 5e-12
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPP--HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
+++ Q QQQQQ Q QPP +Q Q Q Q Q
Sbjct: 252 SQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQP 311
Query: 144 QQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
Q Q+ Q ++Q Q QQQ+ Q+
Sbjct: 312 QGQQRGPQFREQLVQLSQQQREALSQEE 339
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 1e-11
Identities = 24/118 (20%), Positives = 61/118 (51%)
Query: 55 WWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQ 114
W S+ I + S + A ++ + + + Q QQ ++ +QQ++ ++ +
Sbjct: 31 WGSLDETIEASGGGGGGSVIDAVMVDPGAVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAE 90
Query: 115 QQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ + +Q +Q +++Q+ +R Q+QQ Q + ++Q Q +Q Q+ Q ++ +Q+++
Sbjct: 91 ELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKK 148
|
Length = 387 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 66.9 bits (162), Expect = 2e-11
Identities = 46/103 (44%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQ--QSQQPPHQQQQQQQQQQQQLQMQ---QILLQR 134
+ ++ EQQ+QQQ Q QQQQQQ Q QQ QQQQQ Q QQ QM Q Q
Sbjct: 338 QEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNGGGQFATQA 397
Query: 135 HAQQQQQHQQQH---QQQQQQQQQPPQQPQQQQPQQQQQRRDG 174
H Q QH Q+Q Q QQQ Q QQ Q Q QQ + G
Sbjct: 398 HQHAAYLQQMQHMRLQEQIQHQQQQAQHHQQAQQQHQQPAQHG 440
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 3e-11
Identities = 55/219 (25%), Positives = 72/219 (32%), Gaps = 6/219 (2%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQ-QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHA 136
++ + Q QQQQ Q QQQ Q Q QQ QQQ Q Q Q QQ
Sbjct: 204 GGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQP 263
Query: 137 QQQQQHQQQHQQQQQQQQQPPQQPQ-QQQPQQQQQRRDGAHLLNGNTNGLLGND-SLMRQ 194
QQ Q Q Q QQQ QQ PQQ Q P Q QQ G G G + Q
Sbjct: 264 QQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQ 323
Query: 195 NPGTANAMATRMYEEKLKL---PVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAAAT 251
+++LK +R +Q+ G N +
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQM 383
Query: 252 GQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINP 290
+ G GG+ + Q S+P ++
Sbjct: 384 VALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQT 422
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 3e-11
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
+Q +QQQQQ+ ++ + Q+ +QQQ ++ QQ+Q Q+ L Q ++ +Q+ Q +
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAE 121
Query: 150 QQQQQQPPQQPQQQQPQQQQ 169
+ +Q +Q Q ++ +
Sbjct: 122 EAAKQAALKQKQAEEAAAKA 141
|
Length = 387 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 3e-11
Identities = 22/84 (26%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
+Q +QQQQQ+ +++++ Q+++++QQQ ++LQ +Q Q +Q ++ + Q+Q++
Sbjct: 62 EQYNRQQQQQKSAKRAEE---QRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKK 118
Query: 152 QQQQPPQQPQQQQPQQQQQRRDGA 175
Q ++ +Q +Q Q ++ A
Sbjct: 119 QAEEAAKQAALKQKQAEEAAAKAA 142
|
Length = 387 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 3e-11
Identities = 42/109 (38%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+ Q A +QQ QQ QQ Q Q QQ QQP Q Q QQ QQ Q + QQ
Sbjct: 754 QPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQ---YQQPQQP 810
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL---NGNTNGL 185
Q Q+QQ QQ PQ Q QQP Q + H L NG++ L
Sbjct: 811 VAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPL 859
|
Length = 1355 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 5e-11
Identities = 18/85 (21%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+Q +QQQQQ+ ++ ++ ++ QQQ ++ QQ+Q + ++ L++ +++ Q+Q +Q
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQER--LKQLEKERLAAQEQKKQ 119
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRD 173
++ +Q + +Q + +
Sbjct: 120 AEEAAKQAALKQKQAEEAAAKAAAA 144
|
Length = 387 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 1e-10
Identities = 30/81 (37%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
QQ Q Q QQ Q Q Q Q QQ QQ Q Q Q
Sbjct: 152 QQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQ---QPPQMGQPGMPGGGGQG 208
Query: 150 QQQQQQPPQQPQQQQPQQQQQ 170
Q QQQ P QQQ PQ QQQ
Sbjct: 209 QMQQQGQPGGQQQQNPQMQQQ 229
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-10
Identities = 31/133 (23%), Positives = 43/133 (32%), Gaps = 45/133 (33%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ--MQQI-------------- 130
RE +Q +Q Q+ Q P Q + QQ LQ M +I
Sbjct: 502 REALDDYMRQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQRMMDRIEELMESGRRAEAQQ 561
Query: 131 LLQ---------RHAQQQQQHQQQHQQQ----------QQ----------QQQQPPQQPQ 161
LL+ + Q Q Q + QQ QQ Q+Q Q+ +
Sbjct: 562 LLEQLQQMMENLQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGE 621
Query: 162 QQQPQQQQQRRDG 174
QQ Q Q + G
Sbjct: 622 QQGQQGQGGQGQG 634
|
Length = 820 |
| >gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
EQ+Q +Q Q +QQ Q + P+ +Q Q + QQ + Q Q
Sbjct: 83 EQRQLLEQMQADMRQQPTQLSEVPYNEQTPQVPRSTVQIQQQ---AQQQQPPATTAQPQP 139
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQ 170
+Q P QPQ P + Q
Sbjct: 140 VTPPRQTTAPVQPQTPAPVRTQP 162
|
Length = 256 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-09
Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 16/102 (15%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQP------------PHQQQQQQQQQQQQLQ----MQQ 129
A + + Q Q + Q Q Q +Q+ Q Q Q QQ L +Q
Sbjct: 129 APKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQ 188
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ +Q Q +Q PQQ Q Q
Sbjct: 189 AAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQP 230
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-09
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQ 150
+ + Q Q + Q Q P Q+ ++ + QLQ +Q Q QQ Q +Q
Sbjct: 129 APKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQ 188
Query: 151 Q--QQQQPPQQPQQQQPQQQQQRRDGAH 176
QQ PP+QP Q
Sbjct: 189 AAFPQQGPPEQPPGYPQPPQGHPEQVQP 216
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (148), Expect = 2e-09
Identities = 36/90 (40%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
Y + Q A + Q QQ QQ Q Q QQ QQP Q Q QQ QQ A
Sbjct: 765 YQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV-----------AP 813
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
Q Q Q Q Q Q Q PQQP QPQ
Sbjct: 814 QPQYQQPQQPVAPQPQYQQPQQPVAPQPQD 843
|
Length = 1355 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 59.2 bits (142), Expect = 5e-09
Identities = 36/94 (38%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ-M 127
++ ++ + + Q + ++QQ QQQQQ Q QQ Q Q Q LQ M
Sbjct: 348 QRQQQIMHQHQQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNGGGQFATQAHQHAAYLQQM 407
Query: 128 QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQ 161
Q + LQ Q QQQ Q HQQ QQQ QQP Q Q
Sbjct: 408 QHMRLQEQIQHQQQQAQHHQQAQQQHQQPAQHGQ 441
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 7e-09
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ- 147
Q + Q Q Q Q+ S + Q QQ+QQ Q Q Q +L + +Q Q
Sbjct: 137 PQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGP 196
Query: 148 -QQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+Q QPPQ +Q QQ
Sbjct: 197 PEQPPGYPQPPQGHPEQVQPQQFLPAPSQ 225
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.6 bits (140), Expect = 9e-09
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 624 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 683
S V+ FS DG+++++G D LW T NL+ H+S +T + FSP LA+
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430
Query: 684 SFDKTVRVWDADNPGYSL 701
S D T+R+WD S+
Sbjct: 431 SSDNTIRLWDLKTSLKSV 448
|
Length = 466 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 9e-09
Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A Q +Q QQ + Q Q + +P Q QQ Q Q +Q L Q Q
Sbjct: 97 ASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQP---VSPQVAPA 153
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q Q Q Q +P Q
Sbjct: 154 PQPVHSAPQPAQQAFQPAEPVAAPQ 178
|
Length = 333 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 1e-08
Identities = 26/69 (37%), Positives = 33/69 (47%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
+ QQ Q QQ + Q P QQ QQQ QQQ QQ Q AQQ Q +Q H
Sbjct: 197 HRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGH 256
Query: 147 QQQQQQQQQ 155
++ ++Q Q
Sbjct: 257 KRSREQGNQ 265
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-08
Identities = 53/320 (16%), Positives = 78/320 (24%), Gaps = 77/320 (24%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQS-----------------QQPPHQQQQQQQQQ 121
+ +++ Q + + + P Q + Q Q
Sbjct: 87 VGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQP 146
Query: 122 QQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGN 181
Q Q L + AQ QQ+ Q Q QQ P P +Q QQ +
Sbjct: 147 QTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQP 206
Query: 182 TNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPNH 241
G + P + A A
Sbjct: 207 PQGHPEQVQPQQFLPAPSQAPAQPPLP--------------------------------- 233
Query: 242 ASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEG 301
Q + G+S Q+ Q P P P+
Sbjct: 234 -------PQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQ------QPPQPQAQPPPQN 280
Query: 302 SLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQLL 361
PG QG N PL Q P +Q PQ Q + + Q +
Sbjct: 281 QPTPHPGLPQGQNA------------PLPPPQQPQLLPLVQQPQG--QQRGPQFREQLVQ 326
Query: 362 LAQQNLTSPSASDESRRFRM 381
L+QQ + S + R R
Sbjct: 327 LSQQQREALSQEEAKRAKRR 346
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 17/90 (18%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A+ ++Q+++++QQQ ++ QQ Q +Q++ +Q ++++L Q+ ++ A++ +
Sbjct: 74 AKRAEEQRKKKEQQQAEELQQKQAA--EQERLKQLEKERLAAQEQ--KKQAEEAAKQAAL 129
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
Q+Q ++ + + + + +R A
Sbjct: 130 KQKQAEEAAAKAAAAAKAKAEAEAKRAAAA 159
|
Length = 387 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 57.7 bits (138), Expect = 2e-08
Identities = 32/80 (40%), Positives = 41/80 (51%)
Query: 95 QQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
Q Q Q QQ + + QQQ+++MQ+I QR Q QHQQQ QQ+ QQQQ
Sbjct: 310 QSAPPPAMNPQHIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQ 369
Query: 155 QPPQQPQQQQPQQQQQRRDG 174
QQ QQ QQ + +G
Sbjct: 370 MLLQQQQQMHQLQQHHQMNG 389
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-08
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 656 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 693
K L+ H+ +T V FSP LA+ S D TVRVWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 3e-08
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
EQ Q +QQ Q + ++Q P Q+QQ Q+Q+Q Q+ + QR AQQ + +Q Q
Sbjct: 123 EQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQ--QRLAQQSRTTEQSWQ 180
Query: 148 QQQQ--QQQQPPQQPQQQQPQQQQQ 170
QQ + Q QP+Q +P QQ
Sbjct: 181 QQTRTSQAAPVQAQPRQSKPASTQQ 205
|
Length = 319 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-08
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 654 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 693
+ + L+ H+ +T V FSP LA+ S D T+++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPP-HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
AR Q Q Q Q +Q QQPP Q Q + Q Q + + Q +Q Q
Sbjct: 84 ARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQ 143
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q Q P Q QQ Q
Sbjct: 144 QPVSPQVAPAPQPVHSAPQPAQQAFQ 169
|
Length = 333 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 4e-08
Identities = 21/58 (36%), Positives = 25/58 (43%)
Query: 115 QQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ QQ Q QQ +Q AQQ QQ QQ Q QQ P QQ +Q +R
Sbjct: 201 PKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKR 258
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 4e-08
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 94 QQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQ 153
+ + + QQ + Q P QQ Q QQ QQQ Q Q QQ
Sbjct: 195 HRHRHAPKPTQQPTVQNPAQQPTVQNPAQQP------------QQQPQQQPVQPAQQPTP 242
Query: 154 QQPPQQPQQQQPQQQQQRRDG 174
Q P QQP Q + ++ R G
Sbjct: 243 QNPAQQPPQTEQGHKRSREQG 263
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 5e-08
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+ + + QQ Q +QQP Q QQ QQQ QQQ Q
Sbjct: 195 HRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQP-------------QQQPVQPAQQPT 241
Query: 149 QQQQQQQPPQQPQQQQPQQQQ 169
Q QQPPQ Q + ++Q
Sbjct: 242 PQNPAQQPPQTEQGHKRSREQ 262
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (133), Expect = 5e-08
Identities = 23/79 (29%), Positives = 34/79 (43%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
+ QQ Q+Q+Q QQ +QQ+ Q +Q QQQ + Q + Q + QQ
Sbjct: 147 EQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQP 206
Query: 146 HQQQQQQQQQPPQQPQQQQ 164
+Q Q Q + QQ
Sbjct: 207 YQDLLQTPAHTTAQSKPQQ 225
|
Length = 319 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 22/124 (17%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 50 GFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLI--KAREQQQQQQQQQQQQQQQQQQS 107
G L + + + I+ L+ A QQ + QQQ++ +++Q
Sbjct: 16 GLLI--LGSLY-----HSVKPEPGGGGEIIQAVLVDPGAVAQQANRIQQQKKPAAKKEQE 68
Query: 108 QQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
+Q +QQ ++ ++Q+ + + Q+ +Q+ ++ +Q +Q +Q ++ +Q + +
Sbjct: 69 RQKKLEQQAEEAEKQRAAEQAR---QKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAK 125
Query: 168 QQQR 171
+Q
Sbjct: 126 AKQA 129
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 6e-08
Identities = 24/89 (26%), Positives = 29/89 (32%), Gaps = 15/89 (16%)
Query: 88 EQQQQQQQQQQQQ-------QQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
EQ Q +QQ Q +Q Q + QQQ QQQQ Q Q
Sbjct: 89 EQMQADMRQQPTQLSEVPYNEQTPQVPRSTVQIQQQAQQQQPPATTAQ--------PQPV 140
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
+Q Q Q P + Q P Q
Sbjct: 141 TPPRQTTAPVQPQTPAPVRTQPAAPVTQA 169
|
Length = 256 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 18/85 (21%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
R QQQ++ +++Q++Q++ QQ ++Q+ +Q +Q +++Q + +Q +Q
Sbjct: 53 NRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAA--EKAAKQAEQA 110
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
+Q +++Q+Q + +Q + + +
Sbjct: 111 AKQAEEKQKQAEEAKAKQAAEAKAK 135
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 6e-08
Identities = 10/94 (10%), Positives = 59/94 (62%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
E A E+++++++++++++ + +Q +++++Q++ +++LQ ++ + + +
Sbjct: 49 EERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERI 108
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q++ + + Q+++++Q++ ++ + ++ +++
Sbjct: 109 QEEDEAEAQEKREKQKKLREEIDEFNEERIERKE 142
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 7e-08
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 16/217 (7%)
Query: 622 STSKVICC-HFSSDGKLLATGGHDKKAVLWHTDTLKSK--------TNLEEHSSLITDVR 672
++S ++C F DG+ AT G +KK ++ +++ L S L
Sbjct: 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICW 540
Query: 673 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICSCDGDG 731
S ++A+S+F+ V+VWD L T M H V S+D+ L+ S DG
Sbjct: 541 NSYIKSQVASSNFEGVVQVWDVARS--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG 598
Query: 732 EIRYWSINNGSC--TRVFKGGTAQMRFQPHLGRYLA-AAAENVVSILDAETQACRL-SLQ 787
++ WSIN G T K ++F GR LA +A++ V D L ++
Sbjct: 599 SVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658
Query: 788 GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG 824
GH+K + V + S L++S +++++++W + G
Sbjct: 659 GHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISG 695
|
Length = 793 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 8e-08
Identities = 33/84 (39%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ--HQQQH 146
Q Q QQQQ Q Q P QQ Q QQ QQ Q Q QQ
Sbjct: 78 APQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQ 137
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQ 170
QQ Q Q PQQ Q Q P QQ Q
Sbjct: 138 AQQPQPPPQVPQQQQYQSPPQQPQ 161
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 9e-08
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
TQL + +Q Q + Q QQQ QQQQ Q + Q Q
Sbjct: 100 TQLSEVPYNEQTPQVPRSTVQIQQQA------QQQQPPATTAQPQPVTPPRQTTAPVQPQ 153
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
Q Q + P+ + ++++QR
Sbjct: 154 TPAPVRTQPAAPVTQAVEAPKVEAEKEKEQR 184
|
Length = 256 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 9e-08
Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ-QQQQQQLQMQQILLQRHAQQQQQHQ 143
+ R + +++ +Q++Q+ Q +++ Q ++ QQQQ+L Q LQR A +++
Sbjct: 273 QQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQR-ALERRLRL 331
Query: 144 QQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGN-----DSLMRQ 194
+ + ++ Q+ Q PQ++ + QQ+ L L ++L +Q
Sbjct: 332 AKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALAQQ 387
|
Length = 438 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 23/98 (23%), Positives = 32/98 (32%)
Query: 73 EVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILL 132
EV + A+E + + Q Q Q +Q QQ + Q Q +
Sbjct: 65 EVRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQP 124
Query: 133 QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
QQ +Q Q +Q QQ P P Q Q
Sbjct: 125 APQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQ 162
|
Length = 333 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-07
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 779 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 816
+ +L+GHT P+ SV + P G+ LAS S+D ++++W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 13/102 (12%), Positives = 57/102 (55%), Gaps = 9/102 (8%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQ---------QSQQPPHQQQQQQQQQQQQLQMQQI 130
E + K RE + + QQ++ + ++++ Q + ++Q+++++ +++ + +Q
Sbjct: 175 ERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQKQE 234
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
L + +Q ++ +++ Q+++ +++ ++ ++Q + ++ +
Sbjct: 235 LQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQ 276
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 51.3 bits (122), Expect = 1e-07
Identities = 30/84 (35%), Positives = 57/84 (67%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
++Q +++QQQQ+Q+++ Q + QQ+ QQ + + + QQ +R+ ++QQQ Q+Q+Q
Sbjct: 38 KEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQ 97
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQR 171
+ QQ+ QQ Q+P++QQ Q++ R
Sbjct: 98 ECQQRCQQQEQRPRRQQQCQRECR 121
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 54.2 bits (129), Expect = 2e-07
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+ + + Q + P H Q QQQ + +L QQ + + +QQ+Q Q HQ
Sbjct: 298 KSPMEAGGDRMPQSAPPPAMNPQHIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQQIMHQH 357
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
QQQQQQ+ QQ Q QQQ + H +NG
Sbjct: 358 QQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNG 389
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 53.8 bits (128), Expect = 2e-07
Identities = 32/81 (39%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 89 QQQQQQQQQQQQQQQQ-------QQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
QQQQQ Q QQ Q Q Q + QQ Q + Q+Q+Q QQ Q H Q QQQ
Sbjct: 373 QQQQQMHQLQQHHQMNGGGQFATQAHQHAAYLQQMQHMRLQEQIQHQQQQAQHHQQAQQQ 432
Query: 142 HQQQHQQQQQQQQQPPQQPQQ 162
HQQ Q Q P P
Sbjct: 433 HQQPAQHGQMGYGIPNGYPAH 453
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 23/67 (34%), Positives = 30/67 (44%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A + QQ Q QQ Q Q P QQ QQQ Q Q Q Q+ Q +Q H++
Sbjct: 200 APKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRS 259
Query: 146 HQQQQQQ 152
+Q Q+
Sbjct: 260 REQGNQE 266
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-07
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 782 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 816
+L+GHT P+ SV + P G LLAS S+D +VRVW
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 12/89 (13%), Positives = 60/89 (67%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ +E+++ +++++Q+Q+ Q+ + +Q ++++ Q+++ ++ ++ +L++ A+ ++ Q+
Sbjct: 218 RQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQE 277
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++++ ++ + ++ +QQ +++++R
Sbjct: 278 NAEKRRMKRLEHRRELEQQIEEKEERRAA 306
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 51.3 bits (122), Expect = 2e-07
Identities = 31/88 (35%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ--QQQHQQ 144
REQQQ +++ ++Q +++QQQ +Q Q++ +Q QQ+ Q + + QQ ++++++
Sbjct: 28 REQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEK 87
Query: 145 QHQQQQQQQQQPPQ--QPQQQQPQQQQQ 170
+ QQQQ+Q Q+ Q Q Q+Q+P++QQQ
Sbjct: 88 EQQQQQRQYQECQQRCQQQEQRPRRQQQ 115
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 22/81 (27%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL-LQRHAQQQQQHQQQHQQQQ 150
QQ Q P Q QQ + Q H Q QQ Q Q
Sbjct: 44 QQHPPTHTLQPHHHIPVLPAQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQ 103
Query: 151 QQQQQPPQQPQQQQPQQQQQR 171
Q PQQP Q QP
Sbjct: 104 PLQPPQPQQPMQPQPPVHPIP 124
|
They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 3e-07
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 99 QQQQQQQQSQQPPHQQQQQ----QQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
QQ + Q Q + +QQ ++Q ++L+ +Q Q +Q ++ + + Q+QQ+Q +
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAE 121
Query: 155 QPPQQPQQQQPQQQQQRRDGA 175
+ +Q Q +Q QQ++Q R A
Sbjct: 122 EAEKQAQLEQKQQEEQARKAA 142
|
Length = 387 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 53.8 bits (128), Expect = 3e-07
Identities = 36/94 (38%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ---QQH 142
A Q Q QQQ + + Q Q+ Q+ +QQ+QQQ Q QQ Q H QQQ QQ
Sbjct: 316 AMNPQHIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQMLLQQQ 375
Query: 143 QQQHQQQQQQQQ----QPPQQPQQQQPQQQQQRR 172
QQ HQ QQ Q Q Q Q QQ +
Sbjct: 376 QQMHQLQQHHQMNGGGQFATQAHQHAAYLQQMQH 409
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 3e-07
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQ-QLQMQQILLQRHAQQQQ 140
+L +A ++ +Q++Q+ Q ++ + Q P QQQQ+ + Q ++Q+ L +R +Q
Sbjct: 275 RLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQ 334
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ ++ Q+ QQQ Q + QQ+ +Q +QR
Sbjct: 335 RLERLSQRLQQQNPQRRIERAQQRLEQLEQR 365
|
Length = 438 |
| >gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 14/107 (13%), Positives = 52/107 (48%)
Query: 67 TNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ 126
++ + ++ +L + +E+ + Q+Q + QQ+ Q+ +Q + + ++ Q++L
Sbjct: 59 SDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELA 118
Query: 127 MQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ L + +++++ ++ + +Q+ + + Q+ ++R
Sbjct: 119 RIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQRR 165
|
Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 17/81 (20%), Positives = 25/81 (30%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
Q + Q Q QQ Q P Q QQ Q Q + QQ +
Sbjct: 115 PQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPV 174
Query: 148 QQQQQQQQPPQQPQQQQPQQQ 168
Q + P +P+++
Sbjct: 175 AAPQPEPVAEPAPVMDKPKRK 195
|
Length = 333 |
| >gnl|CDD|217472 pfam03280, Lipase_chap, Proteobacterial lipase chaperone protein | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 30/114 (26%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL----------------- 131
Q +Q+ ++ +Q P ++ ++ QQ Q
Sbjct: 72 QDPSLSDEQKARRLAALIAQLPEDLREARRNAALQQELAQATAQLQAQGASPQDLRAARA 131
Query: 132 ----------LQRHAQQQQQHQQQHQQQQQQQQQ---PPQQPQQQQPQQQQQRR 172
L + Q++ QQ++ ++ Q +Q Q Q R+
Sbjct: 132 ALVGPEAAQRLAQLDQERAAWQQRYDDYLAERDQILAAGLSDADKQAQIAQLRQ 185
|
Length = 189 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-07
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 86 AREQQQ--QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
RE+ + ++Q QQQ + ++ Q + + + Q +QQQ + +Q +Q QQ
Sbjct: 635 NREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEA 694
Query: 144 QQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ ++Q Q+ Q+ + QQ Q ++++R
Sbjct: 695 KALNVEEQSVQETEQEERVQQVQPRRKQR 723
|
Length = 1068 |
| >gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 18/86 (20%), Positives = 43/86 (50%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
Q++K R+Q+ + Q +Q+QQ+ + ++Q+QQ +QQ+ M Q Q+Q
Sbjct: 31 IQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQH 90
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQ 166
+ + + + +Q ++++ +
Sbjct: 91 LLNEAREDVATARDEWLEQLEREKQE 116
|
Length = 250 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 5e-07
Identities = 32/116 (27%), Positives = 39/116 (33%), Gaps = 14/116 (12%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
+ + Q +K + + + QQQ QQQQQQQ P QQQ QQ Q QM
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQM 383
Query: 128 Q--QILLQRHAQQQQQHQQQHQ------------QQQQQQQQPPQQPQQQQPQQQQ 169
L + Q Q Q Q Q PQ PQ P
Sbjct: 384 VALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQPSVPSPGG 439
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 11/93 (11%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 82 QLIKAREQQQQ--QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+L +ARE+Q + +++ Q+++ +++ + ++ +Q + ++ +Q+ + +++ H ++
Sbjct: 234 ELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRREL 293
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+Q ++ ++++ +++ + ++ +++ +R+
Sbjct: 294 EQQIEEKEERRAAEREEELEEGERLREEEAERQ 326
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 6e-07
Identities = 33/91 (36%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQ---------QQQLQMQQILLQRHAQQQQQ 141
Q QQQQ Q Q Q P QQ Q QQ Q Q Q+ QQ Q
Sbjct: 83 QPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQ 142
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q QQQQ Q P Q QQ P Q Q
Sbjct: 143 PPPQVPQQQQYQSPPQQPQYQQNPPPQAQSA 173
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 6e-07
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 25/119 (21%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQ----------------QQ 123
E L +E ++Q++ + ++ + Q QQ+ Q
Sbjct: 28 EAALQLLQEAVNSKRQEEAEPAAEEAELQAELIQQELAINDQLSQALNQQTERLNALASD 87
Query: 124 QLQMQQILLQ-----RHAQQQQQHQQ----QHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
Q+ +LLQ R ++Q + + QQ P+ Q Q+ + Q RD
Sbjct: 88 DRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLGPLPEAGQPQEQFEVTQERD 146
|
Length = 835 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 7e-07
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ--QQQQQLQMQQILLQRHAQ--QQQQHQQQ 145
Q+ + + Q QPP+ Q +Q QQ + Q+ R AQ Q Q
Sbjct: 74 APANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPA 133
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQR 171
+Q Q +Q Q P PQ Q
Sbjct: 134 YQPQPEQPLQQPVSPQVAPAPQPVHS 159
|
Length = 333 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 16/97 (16%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
I+ Q A +++Q++Q++ +QQ ++ ++ + +Q +Q++ +Q+ ++ Q
Sbjct: 55 IQQQKKPAAKKEQERQKKLEQQAEEAEKQRA---AEQARQKELEQRAAAEKAAKQAEQAA 111
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+Q ++Q Q ++ + +Q + + + + +++ ++ A
Sbjct: 112 KQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEA 148
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
TQL++ +Q +Q+QQ Q+Q+Q Q Q+ QQ + +Q QQ R +Q
Sbjct: 134 TQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQ---TRTSQAAP 190
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQ------QPQQQQ 169
Q Q + QQP Q Q Q + QQ
Sbjct: 191 VQAQPRQSKPASTQQPYQDLLQTPAHTTAQSKPQQ 225
|
Length = 319 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 11/94 (11%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
E + + R++++++ + Q+Q ++++ + +Q++ +++ Q++ QM +I+ + +
Sbjct: 57 EEEERERKRKEERREGRAVLQEQIEEREKR----RQEEYEERLQEREQMDEIIERIQEED 112
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ + Q++ ++Q++ +++ + +++ ++++++
Sbjct: 113 EAEAQEKREKQKKLREEIDEFNEERIERKEEEKE 146
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 14/69 (20%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ R++++QQQ ++ QQ+Q +Q + ++++ Q+Q++ + A+Q Q+
Sbjct: 79 EQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEA------AKQAALKQK 132
Query: 145 QHQQQQQQQ 153
Q ++ +
Sbjct: 133 QAEEAAAKA 141
|
Length = 387 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ---QQLQMQQILLQRHAQQQQQHQQ 144
E Q Q + Q Q QQP +Q Q +Q QQ Q+ + Q QQ Q
Sbjct: 110 EAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQ 169
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ Q +P +P + +++
Sbjct: 170 PAEPVAAPQPEPVAEPAPVMDKPKRK 195
|
Length = 333 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-06
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 698 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 737
G LRT GH+ V S+ F P+ +L+ S DG +R W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-06
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 697 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 737
G L+T GH+ V S+ F P+ + S DG I+ W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 8/96 (8%), Positives = 56/96 (58%), Gaps = 6/96 (6%)
Query: 84 IKARE--QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+ ++ Q+ +++Q ++++++ Q++ + ++++ ++Q + +++Q ++ ++ +
Sbjct: 229 RRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLE 288
Query: 142 H----QQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
H +QQ +++++++ ++ ++ + +++ +
Sbjct: 289 HRRELEQQIEEKEERRAAEREEELEEGERLREEEAE 324
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 14/103 (13%), Positives = 61/103 (59%)
Query: 71 HSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI 130
+ E A E + IKA E++++++ + ++++ + + +++++++++++ + Q
Sbjct: 19 NKERDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQE 78
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++ +++Q+ ++ Q+++Q + ++ Q++ + Q++R+
Sbjct: 79 QIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKRE 121
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 29/86 (33%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 89 QQQQQQQQQQQQQ----QQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
Q Q QQ QQ Q Q PP QQ Q QQ Q QQ Q QQ Q Q
Sbjct: 106 QVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQN 165
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q Q Q P++ Q Q
Sbjct: 166 PPPQAQSAPQVSGLYPEESPYQPQSY 191
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 3e-06
Identities = 23/93 (24%), Positives = 56/93 (60%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+ + + + + +Q+ + Q++QQQ +++ ++ ++QQQQ+Q+++ Q + Q+ QQ
Sbjct: 10 QQRYEQCQRRCEQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQH 69
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ + QQ+ +++ +Q QQQ+ Q+ Q+R
Sbjct: 70 EPRHRPTCQQRCERRYEKEQQQQQRQYQECQQR 102
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|238163 cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 19/98 (19%)
Query: 88 EQQQQQQQQQQQQQ---------QQQQQSQQPPHQQQQQQQQQQQQ--LQMQQILLQRHA 136
+QQ Q QQQ QQ QQ PP QQ + +QQ Q+ QI
Sbjct: 1 QQQCQPGQQQPQQPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQI------ 54
Query: 137 QQQQQHQ--QQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+Q + + +Q Q QQQQ Q+ QQ Q ++ ++
Sbjct: 55 PEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERMRQA 92
|
They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans. Length = 110 |
| >gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 17/97 (17%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ-QILLQRHAQQQ 139
+ ++ Q++Q+ + ++ Q + ++ +QQQ+ + +L+ + L Q+
Sbjct: 278 HRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRLDELAIRLRRALENQLALKKQRL 337
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
++ Q+ Q Q+QQQ QQ +++ + +++
Sbjct: 338 ERLTQRLNPQIQRQQQRLQQLERRLDKALRRQLKRKR 374
|
Length = 440 |
| >gnl|CDD|222647 pfam14282, FlxA, FlxA-like protein | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-06
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
Q+Q Q +Q ++ ++Q+QQQ QQQ+QM Q + + QQQQ ++ QQQ
Sbjct: 25 QKQIQSLTKQLKELSSSEDLTAEEKQKQQQLIQQQIQMLQAQIAQL--QQQQSEEAQQQQ 82
Query: 150 QQQQQQPPQQP 160
Q + P Q
Sbjct: 83 QSSIEDSPSQT 93
|
This family includes FlxA from E. coli. The expression of FlxA is regulated by the FliA sigma factor, a transcription factor specific for class 3 flagellar operons. However FlxA is not required for flagellar function or formation. Length = 106 |
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 19/96 (19%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQ----QQQLQMQQILLQRHAQ 137
+L K +E+ +Q + + + ++ + QQ+Q + + + +++ Q+Q Q +Q Q +
Sbjct: 55 ELSKMQEKTRQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDE 114
Query: 138 -QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
++++Q++ +QQ++Q ++ + ++ +Q+ RR
Sbjct: 115 LARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRR 150
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276 |
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-06
Identities = 27/76 (35%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 95 QQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
QQ Q Q QQ P+QQQ QQ Q QQ H Q Q
Sbjct: 3 YQQNTNQYPPQNQQQQPYQQQPYHQQMPPP-----------PYSPPQQQQGHFMPPQPQP 51
Query: 155 QPPQQPQQQQPQQQQQ 170
P Q PQQQQP Q
Sbjct: 52 YPKQSPQQQQPPQFSS 67
|
The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 34/81 (41%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPP-HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
Q Q QQQQSQ PP HQ Q QQ Q QQ Q+ Q Q
Sbjct: 73 LPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPP 132
Query: 149 QQQQQQQPPQQPQQQQPQQQQ 169
QQ Q Q P QP Q PQQQQ
Sbjct: 133 AQQPQAQQP-QPPPQVPQQQQ 152
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-06
Identities = 14/97 (14%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ-----QQQQQLQMQ-QILLQRH 135
+L++ +Q+ +Q QQ + + + +Q QQQ+ ++ ++ + + L++
Sbjct: 500 ELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQL 559
Query: 136 AQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
++ + + + + ++ +QQ Q Q + +
Sbjct: 560 QEELEARLESLSESVSEARERRMALRQQLEQLQARIQ 596
|
Length = 1486 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 15/79 (18%), Positives = 42/79 (53%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
K +E+Q ++ + +Q +Q++ Q + + Q+QQ+Q + +Q L++ Q++Q +
Sbjct: 82 KKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKA 141
Query: 145 QHQQQQQQQQQPPQQPQQQ 163
+Q+++ + + +
Sbjct: 142 AAEQKKKAEAAKAKAAAEA 160
|
Length = 387 |
| >gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 6e-06
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 85 KAREQQQQQQQQQ-----------QQQQQQQQQSQQPPHQQQQQQ-QQQQQQLQMQQILL 132
A QQ Q Q+ Q++Q+ + +++ + ++ +QQQ+L I L
Sbjct: 263 SAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRLDELAIRL 322
Query: 133 QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+R + Q ++Q ++ Q+ P Q QQQ+ QQ ++R D A
Sbjct: 323 RRALENQLALKKQRLERLTQRLNPQIQRQQQRLQQLERRLDKA 365
|
Length = 440 |
| >gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 18/128 (14%), Positives = 59/128 (46%), Gaps = 37/128 (28%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQ------------QQQQQQQQLQMQQILL 132
K ++Q++ Q+ +++Q+Q+++ ++ + +Q Q+ QQ + + +
Sbjct: 96 KQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKK 155
Query: 133 -------------------------QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
++ Q+ + + + QQQ++++++ Q+ +QQ+ ++
Sbjct: 156 EAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEE 215
Query: 168 QQQRRDGA 175
++Q+ + A
Sbjct: 216 RKQKAEEA 223
|
This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 7e-06
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 26/122 (21%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQ-------------------------PPHQ 113
+ Q + Q Q QQQ + Q+ Q++Q Q
Sbjct: 722 VHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQ 781
Query: 114 QQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+Q +Q + Q Q Q L+ + AQ QHQQ + +Q QQ+ Q QQ R+
Sbjct: 782 LEQLKQNLENQRQQAQTLVTQTAQALAQHQQH-RPDGLDLTVTVEQIQQELAQLAQQLRE 840
Query: 174 GA 175
Sbjct: 841 NT 842
|
Length = 1047 |
| >gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 8e-06
Identities = 25/78 (32%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQP-PHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
QQ QQ Q S P H Q Q QQ Q Q + Q Q QQ Q
Sbjct: 63 AQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQPL-------QPPQPQQPMQ 115
Query: 148 QQQQQQQQPPQQPQQQQP 165
Q PP PQ P
Sbjct: 116 PQPPVHPIPPLPPQPPLP 133
|
They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165 |
| >gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 9e-06
Identities = 19/94 (20%), Positives = 40/94 (42%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
KA + QQ+ +Q +++ ++ QQ + +QQ Q + ++ +
Sbjct: 2 KAARNLAEAQQELEQAEEKLEELQQYRLEYRQQLSGSGQGISAAELRNYQAFISALDEAI 61
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
QQQ+ +Q + + ++Q Q+ Q R L
Sbjct: 62 AQQQQELEQAEKQVEQAREQWQEANQERKKLEKL 95
|
Length = 122 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 13/94 (13%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E Q +A EQ++ +Q ++++ Q+Q+ Q + +Q +Q+Q + A+ +
Sbjct: 91 ELQQKQAAEQERLKQLEKERLAAQEQKKQA--EEAAKQAALKQKQAEEAAAKAAAAAKAK 148
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ + + ++ + + + ++ +
Sbjct: 149 AEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAE 182
|
Length = 387 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 17/96 (17%), Positives = 44/96 (45%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E Q K +QQ ++ QQ+Q +Q++ + + Q+Q++Q ++ Q L Q+ A++
Sbjct: 78 EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEA 137
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+ + + + ++ + +++ A
Sbjct: 138 AAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEA 173
|
Length = 387 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 1e-05
Identities = 19/89 (21%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
QL + + Q ++ QQQQ+ + Q+ +++ + +Q+L+ LQ+ Q++
Sbjct: 293 QLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRI 352
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ Q Q+ +Q +Q+ + ++Q +++Q+
Sbjct: 353 ERAQ-QRLEQLEQRLRRAMRRQLKRKRQR 380
|
Length = 438 |
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 106 QSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQP 165
Q Q Q QQQQ Q Q H Q QQQQ P QP +Q
Sbjct: 1 NPYQQNTNQYPPQNQQQQPYQQQPY----HQQMPPPPYSPPQQQQGHFMPPQPQPYPKQS 56
Query: 166 QQQQQ 170
QQQQ
Sbjct: 57 PQQQQ 61
|
The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 21/141 (14%), Positives = 59/141 (41%), Gaps = 9/141 (6%)
Query: 29 AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKARE 88
QA+Q K++ + +A W V ++ ++H + +L + +
Sbjct: 476 EQAYQLVRKIAGEVSRSEA--------WDVARELLRRLREQRHLAEQLQQLRMRLSELEQ 527
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+ +QQQ+ ++ + ++ + + + +Q Q++ + L + ++ +++ QQ
Sbjct: 528 RLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQ 587
Query: 149 QQQQQQQPPQQPQQQQPQQQQ 169
+Q Q + Q+ + P
Sbjct: 588 LEQLQAR-IQRLAARAPAWLA 607
|
Length = 1486 |
| >gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ--QQQQQQLQMQQILLQRHA 136
L +A+++ +Q +++ ++ QQ + + +Q Q + + L + A
Sbjct: 3 AARNLAEAQQELEQAEEKLEELQQYRLEYRQQLSGSGQGISAAELRNYQAFISALDEAIA 62
Query: 137 QQQQQ-----HQQQHQQQQQQQQQ 155
QQQQ+ Q + ++Q Q+
Sbjct: 63 QQQQELEQAEKQVEQAREQWQEAN 86
|
Length = 122 |
| >gnl|CDD|221429 pfam12118, SprA-related, SprA-related family | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ 128
+ + AA +L K + ++ +++ ++ Q Q+QQ+QQQQ++ Q++
Sbjct: 55 KGQASTAAGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVR 114
Query: 129 QILLQRHAQQQQQHQQQHQ 147
+ L+ ++ + H+Q H
Sbjct: 115 E--LKARDREVRAHEQAHA 131
|
This protein is found in bacteria. Proteins in this family are typically between 234 to 465 amino acids in length. There is a conserved GEV sequence motif.Most members are annotated as being SprA-related. Length = 261 |
| >gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH-- 146
QQQ Q Q+ Q QQQ Q+ Q+ Q + L QQ ++Q + Q+
Sbjct: 55 QQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLS 114
Query: 147 QQQQQQQQQPPQQPQQ 162
+ Q++ +
Sbjct: 115 ELQKKVATISGSDRKD 130
|
Length = 391 |
| >gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 21/85 (24%), Positives = 28/85 (32%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
AR+ Q Q Q + Q + QPP Q Q + Q A+Q Q+
Sbjct: 82 ARQSPQHQYQPEYASAQIKIPVPQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLPQEA 141
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q P Q QP +Q
Sbjct: 142 PAPQPVHSAAPQPAVQTVQPAVPEQ 166
|
Length = 324 |
| >gnl|CDD|149534 pfam08513, LisH, LisH | Back alignment and domain information |
|---|
Score = 41.9 bits (100), Expect = 1e-05
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 10 KMLDVYIHDYLVKRDLKASAQAFQAEG 36
+ L+ I+DYLVK K +A+AF E
Sbjct: 1 EELNRLIYDYLVKSGYKETAEAFAKES 27
|
The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 112 HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
H + QQ Q Q Q QQ QQ QQQ QP QQP Q P QQ +
Sbjct: 199 HAPKPTQQPTVQNPAQQP-------TVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQ 251
Query: 172 RDGAH 176
+ H
Sbjct: 252 TEQGH 256
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 2e-05
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
QL + + QQ + +Q QQQ + SQ P Q Q +Q + Q Q LLQ A Q
Sbjct: 161 QLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTTAQ 220
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ QQ + P+ ++ ++R
Sbjct: 221 SK---PQQAAPVTRAADAPKPTAEKKDERR 247
|
Length = 319 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 14/100 (14%), Positives = 66/100 (66%), Gaps = 9/100 (9%)
Query: 79 IETQLIKA-REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQR--- 134
+E Q KA RE++++ ++++++++++++ ++ + QQ++ + ++ ++ ++
Sbjct: 156 LEYQREKAEREEEREAERRERKEEKEREVAR----LRAQQEEAEDEREELDELRADLYQE 211
Query: 135 -HAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ ++++Q +++ +++++Q+Q Q+ +++Q +++++R
Sbjct: 212 EYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQ 251
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 22/78 (28%), Positives = 28/78 (35%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQ 150
+Q + + QQ + P Q Q QQ Q Q ++ Q Q Q QQ
Sbjct: 54 EQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQ 113
Query: 151 QQQQQPPQQPQQQQPQQQ 168
QQ P P QPQ
Sbjct: 114 PTPQQEPYYPPPSQPQPP 131
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 17/93 (18%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
++ +I+ +++QQ+ + Q +Q+QQ ++ +Q+QQ +Q Q + Q
Sbjct: 25 FLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQ-QRASFMAQAQEA 83
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+Q Q + ++ + +Q +++Q+
Sbjct: 84 ADEQRQHLLNEAREDVATARDEWLEQLEREKQE 116
|
Length = 250 |
| >gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
QQQ Q Q+ Q QQQ + Q+ Q+ Q L AQQQ + + +Q
Sbjct: 55 QQQNVLQTQELQALQQQLKALQLAQENQKLLAQ--------LESLIAQQQAELDRLERQL 106
Query: 150 QQQQQQPPQQPQQQQPQQQQQRRD 173
+ Q+Q + ++ R+D
Sbjct: 107 ETLQKQLSELQKKVATISGSDRKD 130
|
Length = 391 |
| >gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
+ Q Q Q +QPP + +Q Q+ H+ Q Q
Sbjct: 104 PQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLPQEAPAPQPV-----HSAAPQPAVQT 158
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
Q +QQ P++ + P+ ++ R ++
Sbjct: 159 VQPAVPEQQVQPEEVVEPAPEVKRPPRKDTVII 191
|
Length = 324 |
| >gnl|CDD|204848 pfam12203, HDAC4_Gln, Glutamine rich N terminal domain of histone deacetylase 4 | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-05
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 87 REQQQQQQQQQ-QQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
REQQ QQ+ +QQQQ Q+Q Q+Q + +Q + Q LQ H +QQQ+
Sbjct: 7 REQQLQQELLLLKQQQQIQKQLLIAEFQKQHENLTRQHEAQ-----LQEHLKQQQELLAM 61
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+QQ+ +++ + Q+Q+ + ++ RR+
Sbjct: 62 KRQQELLEKERKLEQQRQEQELEKHRRE 89
|
This domain is found in eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam00850. The domain forms an alpha helix which complexes to form a tetramer. The glutamine rich domains have many intra- and inter-helical interactions which are thought to be involved in reversible assembly and disassembly of proteins. The domain is part of histone deacetylase 4 (HDAC4) which removes acetyl groups from histones. This restores their positive charge to allow stronger DNA binding thus restricting transcriptional activity. Length = 92 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 3e-05
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Query: 87 REQQQQQQQ-----QQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+E+QQQQ+Q Q++ +Q QQ+ Q P + QQ+ +++ + +Q QR Q+ QQ
Sbjct: 42 KEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQECQQ 101
Query: 142 H---QQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q+Q ++QQQ Q+ ++ Q+ + + +
Sbjct: 102 RCQQQEQRPRRQQQCQRECREQYQEHGRGEGE 133
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 19/80 (23%), Positives = 39/80 (48%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQ 150
QQ+ +QQ + + Q Q + QQQ+L + L ++QQ+ + Q +Q Q
Sbjct: 145 HALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQ 204
Query: 151 QQQQQPPQQPQQQQPQQQQQ 170
++ + Q+ +Q++ + Q
Sbjct: 205 EKAAETSQERKQKRKEITDQ 224
|
Length = 1123 |
| >gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-05
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
R ++ ++ Q+Q Q+QQQ Q+ +Q++ Q Q + Q Q IL Q
Sbjct: 7 RRRKLEELQKQAQEQQQAQE--------EQEEAQAQAEAQKQAILRQ 45
|
Length = 110 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
+QQ Q Q Q Q+ Q+Q+ + L+ Q L + +QQ +Q +
Sbjct: 59 KQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDEL 118
Query: 150 QQQ 152
QQ+
Sbjct: 119 QQK 121
|
Length = 390 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 3e-05
Identities = 15/91 (16%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 66 RTNEKHSEVAASYIETQLIKARE-QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQ 124
+ + E+ E +L + E ++Q++++ ++++++ ++++++ Q+Q++Q++ Q+Q
Sbjct: 52 QDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQ 111
Query: 125 LQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
+ + + A++ + +++H QQ +Q++
Sbjct: 112 KEEAEARAREEAERMRLEREKHFQQIEQERL 142
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 12/89 (13%), Positives = 46/89 (51%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+ K +Q ++ ++Q+ +Q +Q++ +Q ++ +Q +Q Q ++ Q + +Q
Sbjct: 69 RQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQ 128
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ + + + ++ ++ ++Q +++ +
Sbjct: 129 AAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
+ + A + Q + + Q +QQQ ++++Q++ Q QQ+ + + Q
Sbjct: 644 RQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQS 703
Query: 128 QQILLQRHAQQQQQHQQQHQQQQQQQQ 154
Q +Q++ QQ Q +++Q+Q
Sbjct: 704 VQ------ETEQEERVQQVQPRRKQRQ 724
|
Length = 1068 |
| >gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-05
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 6/48 (12%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL 131
I+ R+ ++ Q+Q Q+QQQ Q++Q ++ Q Q + Q+Q ++QIL
Sbjct: 6 IRRRKLEELQKQAQEQQQAQEEQ------EEAQAQAEAQKQAILRQIL 47
|
Length = 110 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 4e-05
Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 23/113 (20%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ- 139
+ +K + QQ QQ Q++++Q+ ++QQ +Q + +++ + + Q
Sbjct: 225 EKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQE 284
Query: 140 ----------------------QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
QQ Q+ H + Q + + + ++ +QQ
Sbjct: 285 RINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQ 337
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 5e-05
Identities = 15/72 (20%), Positives = 40/72 (55%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E + +A EQ++ +Q ++++ + Q+QQ Q ++Q Q +Q+QQ+ Q ++ ++ + +
Sbjct: 91 ELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAE 150
Query: 140 QQHQQQHQQQQQ 151
+ + +
Sbjct: 151 AAKAKAAAEAAK 162
|
Length = 387 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 12/91 (13%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI--LLQRHAQQQQQ 141
+A E ++Q+ +Q +Q++ +Q++ +Q +Q +Q + + +Q + A + +
Sbjct: 75 QQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKA 134
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ +++ +++ Q ++ + + + +
Sbjct: 135 KAEAEAEKKAKEEAKKQAEEEAKAKAAAEAK 165
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 12/103 (11%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 79 IETQLIKAREQQQQQQQQQ-----QQQQQQQQQSQQPPHQQQQQQQQQQQQLQ---MQQI 130
++ Q I+ RE+++Q++ ++ +Q + ++ Q+ + Q+++++Q++L+ +
Sbjct: 76 LQEQ-IEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFN 134
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ +++++ +++ ++ + + Q + ++++ + +++ R
Sbjct: 135 EERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERK 177
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 5e-05
Identities = 18/101 (17%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 82 QLIKAREQQ--------QQQQQQQQQQQQQQQQ---SQQPPHQQQQQQQQQQQQLQMQQI 130
+ ++ + Q+ + Q ++ QQQQ+ Q+ +++ + +Q+L+
Sbjct: 282 RRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLERLSQ 341
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
LQ+ Q++ + Q + +Q +Q+ ++ ++Q ++++QR
Sbjct: 342 RLQQQNPQRRIERAQQRLEQLEQRL--RRAMRRQLKRKRQR 380
|
Length = 438 |
| >gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 111 PHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
PH + + + Q+Q+ Q +Q L+ Q ++ Q+Q QQ Q Q QP QQPQQ +++
Sbjct: 143 PHMMKTKSKNQKQENQEKQEKLEESEIQSEK-QEQPSQQPQSQPQPQQQPQQPNNNKRKA 201
Query: 171 RRDG 174
+G
Sbjct: 202 MEEG 205
|
Length = 222 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 6e-05
Identities = 14/72 (19%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ-QQQQLQMQQILLQRHA 136
++ +L +A E++ + +Q+ ++ Q+ Q Q P + ++ QQ+ +Q + ++++ + ++
Sbjct: 316 RLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLK 375
Query: 137 QQQQQHQQQHQQ 148
+++Q+ + QQ
Sbjct: 376 RKRQRLEALAQQ 387
|
Length = 438 |
| >gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 10/89 (11%), Positives = 22/89 (24%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
Y Q Q Q Q Q + + + + ++ L A
Sbjct: 112 YYMQNHRSEPIQPTQPQYQSPTQTNVASMTIEETQSPNVPIEGINSSSEQLRVELAELAA 171
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQ 166
+ + + +P + + Q
Sbjct: 172 EIYSDASHRVELAKNFMEPQAETEAQPEA 200
|
Length = 332 |
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-05
Identities = 31/174 (17%), Positives = 52/174 (29%), Gaps = 20/174 (11%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPH---------QQQQQQQQQQQQLQMQQILLQRHA 136
A+ ++Q++ Q Q Q Q + +Q P Q Q QQQ Q
Sbjct: 361 AQRKEQRRAHLQDQFMQLQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQP---LGWP 417
Query: 137 QQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG--NTNGLLGNDSLMRQ 194
+ + + P + Q + L +
Sbjct: 418 RMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQS-LPLSQD 476
Query: 195 NPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQL---LDPNHASYI 245
P + A++ + K VL S KQ GE + L ++P A+ I
Sbjct: 477 LP-QPQSTASQGGQNKKLAQVLA-SATPQMQKQVLGERLFPLVEAIEPALAAKI 528
|
These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 7e-05
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 613 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 651
K +++ T V FS DG LLA+G D +W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 12/93 (12%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+L Q++ +++++Q+++++ ++ ++ Q+Q+ Q+ +++Q++ ++ LQ +++
Sbjct: 203 ELRADLYQEEYERKERQKEKEEAEKRRR---QKQELQRAREEQIEEKEERLQEERAEEEA 259
Query: 142 -HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++ ++Q + ++ + ++++ ++ + RR+
Sbjct: 260 ERERMLEKQAEDEELEQENAEKRRMKRLEHRRE 292
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-05
Identities = 25/75 (33%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
QQ Q Q QQQQ QQP HQQ Q Q Q H Q Q
Sbjct: 3 YQQNTNQYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQ------QGHFMPPQPQPYPKQS 56
Query: 149 QQQQQQQPPQQPQQQ 163
QQQQ Q
Sbjct: 57 PQQQQPPQFSSFLSQ 71
|
The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 7e-05
Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 65 ARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQ----PPHQQQQQQQQ 120
A E+H T+L K + Q +Q Q S Q Q QQQ
Sbjct: 187 AMVFEQHKSA-----RTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLLTAQQQ 241
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQ 161
QQQ L L + QQ+ ++Q QQ + QPQ
Sbjct: 242 QQQSLNW---LTRLDELQQEASRRQQALQQALAAEEKAQPQ 279
|
Length = 1047 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 9/114 (7%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 66 RTNEKHSEVAASYIETQLIKAR------EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ 119
R + E E + + E + + Q+++++Q++ +++ + ++ ++++
Sbjct: 83 REKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKE 142
Query: 120 QQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+++++ + +++ + + +++ + +++ + +++++++ ++ + QQ++ D
Sbjct: 143 EEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAED 196
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 8e-05
Identities = 14/81 (17%), Positives = 37/81 (45%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ 152
+ QQ+ +Q Q +++ Q Q + QQ L + +++ Q+ + Q
Sbjct: 140 PENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQ 199
Query: 153 QQQPPQQPQQQQPQQQQQRRD 173
+Q ++ + +++Q+R++
Sbjct: 200 LEQLQEKAAETSQERKQKRKE 220
|
Length = 1123 |
| >gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 8e-05
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQS--QQPPHQQQQQQQQQQQQLQMQQILLQRHA 136
+ QL K ++ Q + Q+++++ Q+++Q +Q ++ ++ +QQ+LQ +Q LQ+
Sbjct: 36 AQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQ 95
Query: 137 QQQQQHQQQHQQQQQQQ 153
Q QQ QQ QQ+ Q
Sbjct: 96 QAAQQELQQKQQELLQP 112
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 8e-05
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
Q I+ Q QQ+ + + + Q+ + P Q++QQ + +Q Q + QQQ +
Sbjct: 433 QSIRFLPQSDQQRPVSRGRGRGQRGPRSQPQNQRRQQNRGRQSSQPPR-------QQQNR 485
Query: 142 HQQQHQQQQQQQQQPPQ-------QPQQQQPQ---QQQQRRD 173
Q +Q+Q Q Q P+ +P+ QPQ Q RR
Sbjct: 486 SNQNNQRQSQGPNQGPRGQGGYNLRPRTYQPQRYGGGQGRRW 527
|
Length = 582 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 9e-05
Identities = 15/93 (16%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E + K EQQ ++ ++Q+ +Q +Q+ + ++ +Q +Q + Q Q+ A++
Sbjct: 66 EQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAK-QAEEKQKQAEEA 124
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ Q + + + + + ++ + Q +++ +
Sbjct: 125 KAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 9e-05
Identities = 24/191 (12%), Positives = 58/191 (30%), Gaps = 34/191 (17%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM-QQILLQRHAQQQQ 140
+ I A + +Q + + +Q +Q+ QQ + QL ++ L + +
Sbjct: 161 ERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELS 220
Query: 141 QHQQQHQQQQQQQQ--------------QPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLL 186
Q++ ++ + + + + + + R A
Sbjct: 221 ADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKPTA 280
Query: 187 GNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENM-------GQLLDP 239
L+ G +L PV + +RFG+ G ++
Sbjct: 281 PEKMLISSTGGFGAL------RGQLAWPV------TGRILRRFGQADGGGLRWKGMVIGA 328
Query: 240 NHASYIKSAAA 250
+ + +K+ A
Sbjct: 329 SAGATVKAIAD 339
|
Length = 420 |
| >gnl|CDD|147845 pfam05914, RIB43A, RIB43A | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 9e-05
Identities = 18/76 (23%), Positives = 42/76 (55%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
QL R+ Q+QQ Q+++++++++Q ++ +Q Q + L+ Q+ L++ ++Q
Sbjct: 279 PEQLAAIRKGQEQQLQEKERRREEEQLREKEWDRQAINQARAAVLLERQERRLRKELRKQ 338
Query: 140 QQHQQQHQQQQQQQQQ 155
Q ++Q+ QQ
Sbjct: 339 LDSANQQLAKEQKAQQ 354
|
This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterized in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells. Length = 379 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 7/85 (8%), Positives = 41/85 (48%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ ++ ++++ Q+Q++Q ++ ++Q +Q+Q ++ + + + A++ +
Sbjct: 102 RLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAK 161
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQ 169
+ + +++ + + +++
Sbjct: 162 KAAAEAKKKAEAEAAKKAAAEAKKK 186
|
Length = 387 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 1e-04
Identities = 28/62 (45%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 111 PHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPP--QQPQQQQPQQQ 168
P QQ QQ QQQ Q Q + Q QQ Q Q Q QQ Q P QPQ QQPQQ
Sbjct: 751 PVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQP 810
Query: 169 QQ 170
Sbjct: 811 VA 812
|
Length = 1355 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 1e-04
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 651
S + +++ T V FS DGK LA+G D LW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-04
Identities = 32/155 (20%), Positives = 63/155 (40%), Gaps = 31/155 (20%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ 152
+ + Q+ QQ QQ+ + +++ +Q++Q+ Q+ + L + ++ QQQ + QQ
Sbjct: 262 RAELLQRLQQLQQRLAR--AMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQ 319
Query: 153 QQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLK 212
+ Q + + + +Q+ +R + L +QNP R+ + +
Sbjct: 320 RLQRALERRLRLAKQRLERL---------------SQRLQQQNP------QRRIERAQQR 358
Query: 213 LPVLRDSLDDAA------MKQRFGENMGQL--LDP 239
L L L A +QR QL L P
Sbjct: 359 LEQLEQRLRRAMRRQLKRKRQRLEALAQQLEALSP 393
|
Length = 438 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 1e-04
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQ-------QQQQQQQQQLQMQQILL 132
E Q + RE+ Q++ +Q QQ+ QQ + + P QQ ++QQQQQ+Q Q
Sbjct: 44 EQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQE----C 99
Query: 133 QRHAQQQQQHQQQHQQQQ----QQQQQPPQQPQQQQPQQQQQRR 172
Q+ QQQ+Q ++ QQ Q +Q Q+ + + Q+ ++ R
Sbjct: 100 QQRCQQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEER 143
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 112 HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
QQ Q Q L Q LQ+ + Q+Q + +QQ + + Q +Q
Sbjct: 59 KQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQ 114
|
Length = 390 |
| >gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
K++ Q+Q+ Q++Q++ ++ + QS++ QQ Q Q Q Q Q QQ
Sbjct: 149 KSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193
|
Length = 222 |
| >gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILL-----QRHAQQQQQHQQ 144
+ Q+Q +++ ++ Q + Q+ ++++ Q+++Q+LQ Q L + Q+ QQ QQ
Sbjct: 34 KAAQKQLEKEFKKLQAELQK----KEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQ 89
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQ 167
+ QQ+QQ QQ QQ QQ+ Q
Sbjct: 90 ELQQKQQAAQQELQQKQQELLQP 112
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157 |
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQ---QQQSQQPPHQQQQQQQQQQQQ 124
NE E L A +Q+Q ++Q Q + Q++++ +Q + Q+
Sbjct: 601 NETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQR 660
Query: 125 LQMQQILLQRHAQQQQQ-HQQQHQQQQQQ-QQQPPQQPQQQQPQQQQQRRD 173
LQ +Q L+ + +QQ + Q +Q Q Q +QQQ + + D
Sbjct: 661 LQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDD 711
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198 |
| >gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564 | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 11/83 (13%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
K E ++ T+ + ++QQ++++ +Q+++++++ Q+ + Q+ Q+
Sbjct: 269 KKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKL---QE 325
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQ 152
++ A+ +++ +++ ++ +Q+
Sbjct: 326 ERKEQLAKLRKEEKEREKEYEQE 348
|
This family of proteins has no known function. However, one of the members is annotated as an EF-hand family protein. Length = 349 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 26/109 (23%), Positives = 51/109 (46%)
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
+ RT ++ ET+ AR + Q+ +Q+++ +Q+ ++Q + QQ+ +
Sbjct: 82 QLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELAR 141
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
+Q Q Q L+ A+Q++Q + Q Q Q Q+Q Q + Q
Sbjct: 142 LTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLD 190
|
Length = 499 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 2e-04
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 865 ENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903
TL H G + ++A S + +AS S D V++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 2e-04
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 864 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903
S TL H G + ++A S + Y+AS S D +KLW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
I + A EQ+QQ+ Q+ ++ +Q+QQS + Q Q+ Q Q +L +
Sbjct: 41 IANRWQDA-EQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDV 99
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
+ +Q ++++Q+ + QQQ QQ
Sbjct: 100 ATARDEWLEQLEREKQEFFKALQQQTGQQ 128
|
Length = 250 |
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 17/95 (17%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 66 RTNEKHSEVAASYIETQLIKAR-------EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ 118
K E + + + + Q+Q QQ+QQ+ Q Q + ++ + +QQ+
Sbjct: 69 EAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELARKRYQKELEQQR 128
Query: 119 QQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQ 153
+Q ++ L+MQ+ + R ++ +++ + +++
Sbjct: 129 RQNEELLKMQEESVLRQEAMRRATEEEILEMRRET 163
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 12/80 (15%), Positives = 34/80 (42%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+QQ+ ++ + ++ + +Q Q++ + + + + + + ++ QQ
Sbjct: 530 RQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLE 589
Query: 147 QQQQQQQQQPPQQPQQQQPQ 166
Q Q + Q+ + P Q
Sbjct: 590 QLQARIQRLAARAPAWLAAQ 609
|
Length = 1486 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+QQ Q Q Q + + Q+ Q+Q+ + + QQ A +QQ +
Sbjct: 59 KQQAQNQTATNDALANQLTAL--QKAQESQKQELEGILKQQAKALDQANRQQAALAKQLD 116
Query: 149 QQQQQ 153
+ QQ+
Sbjct: 117 ELQQK 121
|
Length = 390 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 112 HQQQQQQQQQQ--QQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
H +QQ Q Q L Q LQ + Q+ +Q+ + +QQ + Q +QQ +
Sbjct: 57 HGKQQAQNQTATNDALANQLTALQ---KAQESQKQELEGILKQQAKALDQANRQQAALAK 113
Query: 170 Q 170
Q
Sbjct: 114 Q 114
|
Length = 390 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 2e-04
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
IKA Q +QQ Q+ + Q + +S+ ++ +QQ ++ Q+ LLQ Q+ +
Sbjct: 299 IKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIR 358
Query: 144 QQHQQQQQQQQQPPQQPQQQQP--QQQQQ 170
H+ ++ QQ Q QQQ
Sbjct: 359 DAHEVATSIREISCQQHTLTQHIHTLQQQ 387
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ--ILLQRHAQQQQQ 141
IK Q+ Q + + Q QP +Q Q ++ Q + +
Sbjct: 101 IKITLPNQEPAYYMQNHRSEPIQPTQPQYQSPTQTNVASMTIEETQSPNVPIEGINSSSE 160
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ + + + + + +
Sbjct: 161 QLRVELAELAAEIYSDASHRVELAKNFME 189
|
Length = 332 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 24/105 (22%), Positives = 29/105 (27%), Gaps = 17/105 (16%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ----------------QQQQQ 124
Q + A +QQQ P Q Q
Sbjct: 75 LQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPAN 134
Query: 125 LQMQQILLQRHAQQQQQHQ-QQHQQQQQQQQQPPQQPQQQQPQQQ 168
+ Q QR QQ QQ Q QQQ Q+ + Q QQQ
Sbjct: 135 SPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQ 179
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|180700 PRK06800, fliH, flagellar assembly protein H; Validated | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
+E ++ K E+ QQ+ ++ Q +Q QQ +++QQ ++Q Q +Q+ ++
Sbjct: 32 VEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQE---HVQQQMKE 88
Query: 139 QQQHQQQHQQQQQQ 152
+ +QQ Q++QQ+
Sbjct: 89 IEAARQQFQKEQQE 102
|
Length = 228 |
| >gnl|CDD|182398 PRK10350, PRK10350, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 2e-04
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 100 QQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ-QHQQQHQQQQQQQQQPPQ 158
Q Q SQQ Q Q QQ QQ+ + QQ+ Q QQQ Q+Q + Q+ QQ QP
Sbjct: 28 QPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKTQTRLQQQHLQNQINNNSQRVQQGQPGN 87
Query: 159 QPQQQQP 165
P +QQ
Sbjct: 88 NPARQQM 94
|
Length = 145 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-04
Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 37/128 (28%)
Query: 85 KAREQQQQQQQQQQQQQ-------QQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
KAR Q +QQQ ++++Q +Q QQ + + ++Q Q+ +Q+ ++QQ+ +R +
Sbjct: 664 KARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQVQPRRKQR 723
Query: 138 QQQQ------------------------------HQQQHQQQQQQQQQPPQQPQQQQPQQ 167
Q Q + + + Q +Q +
Sbjct: 724 QLNQKVRIEQSVAEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPLPVVAQTAPEQDEEN 783
Query: 168 QQQRRDGA 175
+ RD
Sbjct: 784 NAENRDNN 791
|
Length = 1068 |
| >gnl|CDD|238163 cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 26/96 (27%)
Query: 88 EQQQQQQQQQQQQ---------QQQQQQSQQPPHQQQQQQQQQQQ---QLQ--------- 126
+Q Q QQQ QQ QQ P QQ + +QQ QL
Sbjct: 2 QQCQPGQQQPQQPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQIPEQCRCE 61
Query: 127 -----MQQILLQRHAQQQQQHQQQHQQQQQQQQQPP 157
+Q ++ Q+ QQ+QQ Q+ ++ +Q Q P
Sbjct: 62 ALRQMVQGVIQQQQQQQEQQQGQEVERMRQAAQNLP 97
|
They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans. Length = 110 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 32/162 (19%), Positives = 49/162 (30%), Gaps = 53/162 (32%)
Query: 64 IARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQ--------------- 108
+A T ++ EV T ++AR + +Q + Q QQQ +
Sbjct: 306 LAHTRQQIEEVNTRLQSTMALRARIRHHAAKQSAELQAQQQSLNTWLAEHDRFRQWNNEL 365
Query: 109 --------QPPHQQQQQQQQQQQ----------------------------QLQMQQILL 132
Q ++Q +Q QQQ Q Q+ L
Sbjct: 366 AGWRAQFSQQTSDREQLRQWQQQLTHAEQKLNALPAITLTLTADEVAAALAQHAEQRPLR 425
Query: 133 QRHAQQQQQHQQQHQQQQQQQQ--QPPQQPQQQQPQQQQQRR 172
QR Q Q ++ Q Q Q Q Q Q+ + R
Sbjct: 426 QRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMR 467
|
Length = 1047 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 13/115 (11%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ--- 145
+QQ + +Q Q +QQQ +Q+Q Q Q + Q L R Q Q+ Q
Sbjct: 467 RQQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQGPRGQGGYNLRPRTYQPQRYGGGQGRR 526
Query: 146 ----------HQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDS 190
+ QQQQ QP + Q + + + G N N S
Sbjct: 527 WNPNPYRQSGQGRSQQQQPQPEARGNQSRTPGPGRGQGGRGNQNRNQRSGNNTVS 581
|
Length = 582 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 13/121 (10%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ--QQLQMQQI-------- 130
Q + R QQ QQ+ Q QQ + + Q QQQ + QQ
Sbjct: 138 DQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGAGDDES 197
Query: 131 -LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGND 189
L R + +Q+ + + +Q + Q + +R ++G + G+
Sbjct: 198 EALVRLREADGTLEQRIKGAEGGGAMKVL--KQPKKQAKSSKRRTIAQIDGIDSDDEGDG 255
Query: 190 S 190
S
Sbjct: 256 S 256
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL-LQRHAQQQQQHQQ 144
RE + +QQ + +Q+ + +Q Q +QQ Q+ ++ + L Q A+ Q Q Q
Sbjct: 79 LRENEASLEQQLAEAKQRLEAERQRLRQARQQLQEARKAQEKFAELARQEQAEAQAQRQY 138
Query: 145 QHQQQQQ 151
+ +Q+
Sbjct: 139 LEELEQE 145
|
This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis. Length = 152 |
| >gnl|CDD|182789 PRK10863, PRK10863, anti-RNA polymerase sigma factor SigE; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 25/98 (25%), Positives = 33/98 (33%), Gaps = 26/98 (26%)
Query: 95 QQQQQQQQQQQQSQQP-----------------------PHQQQQQQQQQQQQ---LQMQ 128
Q Q + QQ + P QQQQ Q+Q++ +Q
Sbjct: 119 QHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEAAAGNGQQQQVQEQRRRINAMLQ 178
Query: 129 QILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQ 166
LQR +Q +Q Q QQ Q P Q Q Q
Sbjct: 179 DYELQRRLHSEQLQFEQAQTQQAAVQVPGTQSLGTQSQ 216
|
Length = 216 |
| >gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 4/104 (3%)
Query: 74 VAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
+ Q + Q+ + + + QQQ Q +Q Q + Q + Q+ L
Sbjct: 57 LRTFARSLQALNLELIQELNELKARLQQQLLQSREQ---LQLLIESLAQLSSEFQE-LAN 112
Query: 134 RHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHL 177
++ + + QQ +Q P + ++ ++Q ++R
Sbjct: 113 EIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQRIHESA 156
|
Length = 448 |
| >gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 14/104 (13%)
Query: 83 LIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQH 142
LI E+ ++ Q +Q Q Q + ++ ++Q
Sbjct: 95 LINDPEEPSNGGGVEESAQLTAEQRQLLEQMQADMRAAEKVLATAPSEQTVAVEARKQTA 154
Query: 143 QQQHQQQQQQQQQPP--------------QQPQQQQPQQQQQRR 172
+++ Q+ + + Q +Q Q+ P+Q + +
Sbjct: 155 EKKPQKARTAEAQKTPVETEKIASKVKEAKQKQKALPKQTAETQ 198
|
FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis [Cellular processes, Cell division]. Length = 298 |
| >gnl|CDD|197397 cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9) | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 3e-04
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 87 REQQQQQQQQQQQQQQQQQ--------QSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
REQQ QQ+ +QQQQ Q Q Q +Q + Q Q+ Q Q++L + Q+
Sbjct: 5 REQQLQQELLALKQQQQIQKQLLIAEFQKQHENLTRQHEAQLQEHIKQQQEMLAIKQQQE 64
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQ 163
+ Q++ +QQ+Q+Q+ Q+ +QQ
Sbjct: 65 LLEKQRKLEQQRQEQELEKQRREQQ 89
|
This superfamily consists of a glutamine-rich N-terminal helical extension to certain Class IIa histone deacetylases (HDACs), including HDAC4, HDAC5 and HDAC9; it is missing in HDAC7. It is referred to as the glutamine-rich domain, and confers responsiveness to calcium signals and mediates interactions with transcription factors and cofactors. This domain is able to repress transcription independently of the HDAC's C-terminal, zinc-dependent catalytic domain. It has many intra- and inter-helical interactions which are possibly involved in reversible assembly and disassembly of proteins. HDACs regulate diverse cellular processes through enzymatic deacetylation of histone as well as non-histone proteins, in particular deacetylating N(6)-acetyl-lysine residues. Length = 90 |
| >gnl|CDD|213398 cd12191, gal11_coact, gall11 coactivator domain | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 25/90 (27%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQ---------PPHQQQQQQ----------------QQQQQ 123
QQQQQ QQQQQQQ Q Q PP + QQ
Sbjct: 1 PQQQQQPQQQQQQQMPQNPQLVNMMDNMPIPPQLLAKIPNLPPEVKTWRQLKAWLQQNNI 60
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQ 153
Q + + + Q Q+ QQQQQQQ
Sbjct: 61 PPQAMEQIKEVQQTHFQLLMQRRQQQQQQQ 90
|
Gall11/MED15 acts in the general regulation of GAL structural genes and is required for full expression for several genes in this pathway, including GALs 1,7, and 10 in Saccharomyces cerevisiae. GAL11 function is dependent on GCN4 functionality and binds GCN4 in a degenerate manner with multiple orientations found at the GCN4-Gal11 interface. Length = 90 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
Query: 64 IARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQ--QQQQQQQQSQQPPHQQQQQQQQQ 121
++ + SE + ++++ +Q + + QQ P Q Q QQQ
Sbjct: 29 LSHEEAQSSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQ 88
Query: 122 QQQL-QMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
Q Q Q Q QQ Q QQ QQ+ PP QPQ QQ Q
Sbjct: 89 QSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQ 137
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 4e-04
Identities = 16/71 (22%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ-QQQQQQLQMQQILLQRHAQQQQQH 142
++ R Q+ +++ + +Q+ ++ SQ+ Q Q++ ++ QQ+L+ + L+R ++Q +
Sbjct: 317 LQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKR 376
Query: 143 QQQHQQQQQQQ 153
++Q + QQ
Sbjct: 377 KRQRLEALAQQ 387
|
Length = 438 |
| >gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-04
Identities = 17/99 (17%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
L + + + ++ +QQQ+ + + + + Q ++Q+L+ L QR Q Q
Sbjct: 293 EHLARRLQFRSPERLLSEQQQRLDELAIRLRRALENQLALKKQRLER---LTQRLNPQIQ 349
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLN 179
+ QQ+ QQ +++ + ++ +++ ++ + + L+
Sbjct: 350 RQQQRLQQLERRLDKALRRQLKRKRERLEALVEQLESLS 388
|
Length = 440 |
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 20/96 (20%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 63 FIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQ-------QSQQPPHQQQ 115
A+ E ++ A + +E ++A E+++ Q+Q QQ+QQ+ Q + Q +QQ
Sbjct: 68 LEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELARKRYQKELEQQ 127
Query: 116 QQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
++Q ++ ++Q + +L Q ++ + + +++
Sbjct: 128 RRQNEELLKMQEESVLRQEAMRRATEEEILEMRRET 163
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276 |
| >gnl|CDD|180700 PRK06800, fliH, flagellar assembly protein H; Validated | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 4e-04
Identities = 21/90 (23%), Positives = 49/90 (54%)
Query: 74 VAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
V+ S +L + + + +++ Q+ ++ Q+ H++ Q +Q+QQ+L+ ++ L
Sbjct: 13 VSFSEETYELQFPKPIEVEVEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLL 72
Query: 134 RHAQQQQQHQQQHQQQQQQQQQPPQQPQQQ 163
+Q Q+H QQ ++ + +Q Q+ QQ+
Sbjct: 73 ADREQFQEHVQQQMKEIEAARQQFQKEQQE 102
|
Length = 228 |
| >gnl|CDD|204565 pfam10956, DUF2756, Protein of unknown function (DUF2756) | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 4e-04
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 100 QQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ-QHQQQHQQQQQQQQQPPQ 158
Q Q SQQ Q Q QQ QQ+ + QQ+ Q QQQ Q+Q + QQ+ QQ QP
Sbjct: 28 QPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLQTQTRLQQQHLQNQLNNNQQRVQQGQPGN 87
Query: 159 QPQQQQ 164
+QQ
Sbjct: 88 LNARQQ 93
|
Some members in this family of proteins are annotated yhhA however currently no function is known. The family appears to be restricted to Enterobacteriaceae. Length = 104 |
| >gnl|CDD|113452 pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorganising factor | Back alignment and domain information |
|---|
Score = 43.6 bits (102), Expect = 4e-04
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 98 QQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
Q Q P H Q Q + Q Q +H QQ QHQ+QHQQ
Sbjct: 291 HHQHQHHHHPSIPAHHQHQLPEGHQHDHQHHH----QHQQQDLQHQEQHQQH 338
|
ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication. ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 S. cerevisiae). The N-terminal two thirds of the protein are necessary for DNA binding, and the N-terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure. Length = 508 |
| >gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058) | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 13/86 (15%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query: 82 QLIKA---REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
QL+KA +++ ++ ++++++Q++Q + + +Q ++ + A++
Sbjct: 5 QLLKAGLVDKKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAK-----------AEK 53
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQ 164
++ ++ ++Q+Q + +Q Q +Q
Sbjct: 54 AERDRELNRQRQAEAEQKAIVAQIKQ 79
|
This domain, found in various prokaryotic proteins, has no known function. Length = 177 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 20/83 (24%), Positives = 44/83 (53%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+ Q A ++ QQ + ++ + Q +Q Q P ++Q+++ +++Q Q + L Q
Sbjct: 645 QAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSV 704
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQ 162
Q+ +Q+ + QQ Q ++ +Q Q
Sbjct: 705 QETEQEERVQQVQPRRKQRQLNQ 727
|
Length = 1068 |
| >gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-04
Identities = 15/85 (17%), Positives = 36/85 (42%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
E + T + Q +++ Q Q + QQQ+ + +++QQ+
Sbjct: 140 PENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQ 199
Query: 128 QQILLQRHAQQQQQHQQQHQQQQQQ 152
+ L ++ A+ Q+ +Q+ ++ Q
Sbjct: 200 LEQLQEKAAETSQERKQKRKEITDQ 224
|
Length = 1123 |
| >gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 5e-04
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
K ++Q+ Q++Q++ ++ + Q + Q+ P QQ Q Q Q QQQ Q
Sbjct: 150 SKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193
|
Length = 222 |
| >gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 16/77 (20%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 79 IETQLIKAREQQQQQQQQQQQ--QQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHA 136
+ QL K +++Q + ++ ++ Q+ +++ + + +++++++LQ + QR
Sbjct: 19 AQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQ 78
Query: 137 QQQQQHQQQHQQQQQQQ 153
Q+ QQ Q+ QQ++ Q+
Sbjct: 79 QKLQQDLQKRQQEELQK 95
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 140 |
| >gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
+L + RE+ Q+ + +++Q QQ+ QQ QQQ+ +Q + + ++ L + Q+
Sbjct: 173 AELKQTREELAAQKAELEEKQSQQKTLLY--EQQAQQQKLEQARNERKKTLTGLESSLQK 230
Query: 141 QHQQ 144
QQ
Sbjct: 231 DQQQ 234
|
Length = 428 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 6e-04
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPP----------------HQQQQQQQQQQQQLQMQQ 129
+++Q +Q QQQ +Q+ + P H +Q+ +Q+ L Q
Sbjct: 376 TSDREQLRQWQQQLTHAEQKLNALPAITLTLTADEVAAALAQHAEQRPLRQRLVALHGQI 435
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ Q+ Q Q Q Q+Q Q+ + +Q+ ++ QQ D
Sbjct: 436 VPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLAD 479
|
Length = 1047 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 6e-04
Identities = 15/95 (15%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
Q+++ + ++ QQ QQ ++ + Q++Q ++QQ L+ + ++ Q+
Sbjct: 222 QVLEKELKHLREALQQTQQSHAYLTQKR---EAQEEQLKKQQLLKQLRARIEELRAQEAV 278
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
++ ++ + ++ P + Q +Q+ H
Sbjct: 279 LEETQERINRARKAAPLAAHIKAVTQIEQQAQRIH 313
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 6e-04
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 8/107 (7%)
Query: 72 SEVAASYIETQLIKAREQQQQQQQQQQQQ--------QQQQQQSQQPPHQQQQQQQQQQQ 123
S+V + + I+ Q + Q QQ+ Q Q+ Q Q+ Q
Sbjct: 186 SQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQ 245
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q+ + ++ +Q Q+ + + +Q+ Q Q +QQ
Sbjct: 246 QIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQA 292
|
Length = 499 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 6e-04
Identities = 21/104 (20%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ 128
+K + +A+ +++Q++ + + Q +Q+ Q + +Q + ++ Q Q
Sbjct: 174 QKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQ---QTA 230
Query: 129 QILLQRHAQQQQQHQQ--QHQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q + QR AQ Q+ QQ +Q +++++ Q+ + Q + +Q+
Sbjct: 231 QAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQE 274
|
Length = 499 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ-QQHQQQ 149
Q + Q Q P Q Q Q+ L Q + Q QQ
Sbjct: 106 GPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQ 165
Query: 150 QQQQQQPPQQPQQQQPQQ-QQQRRDGA 175
Q Q+ Q QQQ + Q+ DGA
Sbjct: 166 QSAQKNDESQLQQQPNGETPPQQTDGA 192
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|204565 pfam10956, DUF2756, Protein of unknown function (DUF2756) | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 6e-04
Identities = 25/66 (37%), Positives = 32/66 (48%)
Query: 105 QQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQ 164
Q Q P QQ+ Q Q Q QQ+Q + +L Q+ Q + QQ Q Q QQ QQ Q
Sbjct: 28 QPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLQTQTRLQQQHLQNQLNNNQQRVQQGQPGN 87
Query: 165 PQQQQQ 170
+QQ
Sbjct: 88 LNARQQ 93
|
Some members in this family of proteins are annotated yhhA however currently no function is known. The family appears to be restricted to Enterobacteriaceae. Length = 104 |
| >gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 17/84 (20%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E+ KA ++Q +++ +++Q + ++ + + Q+ +++ Q+ + + ++ ++
Sbjct: 12 ESPAGKAAQKQLEKEFKKRQAELEKLEKEL----QKLKEKLQKDAATLSEAAREKKEKEL 67
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQ 163
Q+ Q+ Q++QQ+ QQ Q+ QQ+
Sbjct: 68 QKKVQEFQRKQQKLQQDLQKRQQE 91
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 140 |
| >gnl|CDD|197399 cd10163, ClassIIa_HDAC9_Gln-rich-N, Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase | Back alignment and domain information |
|---|
Score = 39.4 bits (91), Expect = 6e-04
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Query: 87 REQQQQQQ----QQQQQQQQQ---QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
RE+Q QQ+ QQQQQ Q+Q + +Q + +Q Q Q Q+ L++QQ LL QQ+
Sbjct: 5 REKQLQQELLLIQQQQQIQKQLLIAEFQKQHENLTRQHQAQLQEHLKLQQELLAMKQQQE 64
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQ 164
++Q +QQ+Q+Q+ + ++QQ
Sbjct: 65 LLEKEQKLEQQRQEQELERHRREQQ 89
|
This family consists of the glutamine-rich domain of histone deacetylase 9 (HDAC9). It belongs to a superfamily that consists of the glutamine-rich N-terminal helical extension to certain Class IIa histone deacetylases (HDACs), including HDAC4, HDAC5 and HDCA9; it is missing from HDAC7. This domain confers responsiveness to calcium signals and mediates interactions with transcription factors and cofactors, and it is able to repress transcription independently of the HDAC C-terminal, zinc-dependent catalytic domain. It has many intra- and inter-helical interactions which are possibly involved in reversible assembly and disassembly of proteins. HDACs regulate diverse cellular processes through enzymatic deacetylation of histone as well as non-histone proteins, in particular deacetylating N(6)-acetyl-lysine residues. Length = 90 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 7e-04
Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 33/124 (26%)
Query: 64 IARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQ---------PPHQQ 114
+ + N + E +E L Q+QQQ+ Q +Q ++ +
Sbjct: 839 LRQLNRRRVE-----LERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLA 893
Query: 115 Q-------------------QQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
QQ QL+ +LQ +Q +Q +Q +QQ QQ Q+
Sbjct: 894 DRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRD 953
Query: 156 PPQQ 159
QQ
Sbjct: 954 AKQQ 957
|
Length = 1486 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-04
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ 126
+ QL ++ Q+ Q+Q+ + +QQ ++ ++QQ +Q +LQ
Sbjct: 72 LANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQ 119
|
Length = 390 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 7e-04
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
K ++ +QQ ++Q++ Q Q+ + + +++I Q+H Q
Sbjct: 320 MRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQ 379
Query: 140 QQHQQQHQQQ--QQQQQQPPQQPQQQQPQQQQQ 170
H Q Q+ Q+ Q ++ Q +Q
Sbjct: 380 HIHTLQQQKTTLTQKLQSLCKELDILQREQATI 412
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 10/102 (9%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQ----------SQQPPHQQQQQQQQQQQQLQMQQI 130
Q + Q Q Q Q+Q Q Q Q+ Q + Q +
Sbjct: 158 EQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTE 217
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
L R A QQ Q QQ+ Q Q QQ + Q +++ R
Sbjct: 218 ELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERER 259
|
Length = 499 |
| >gnl|CDD|197397 cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9) | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 7e-04
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+QQ QQ+ +QQQQ Q Q + Q+Q + +Q + Q LQ H +QQQ+ QQ
Sbjct: 6 EQQLQQELLALKQQQQIQKQLLIAEFQKQHENLTRQHEAQ---LQEHIKQQQEMLAIKQQ 62
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRD 173
Q+ ++Q + Q+Q+ + ++QRR+
Sbjct: 63 QELLEKQRKLEQQRQEQELEKQRRE 87
|
This superfamily consists of a glutamine-rich N-terminal helical extension to certain Class IIa histone deacetylases (HDACs), including HDAC4, HDAC5 and HDAC9; it is missing in HDAC7. It is referred to as the glutamine-rich domain, and confers responsiveness to calcium signals and mediates interactions with transcription factors and cofactors. This domain is able to repress transcription independently of the HDAC's C-terminal, zinc-dependent catalytic domain. It has many intra- and inter-helical interactions which are possibly involved in reversible assembly and disassembly of proteins. HDACs regulate diverse cellular processes through enzymatic deacetylation of histone as well as non-histone proteins, in particular deacetylating N(6)-acetyl-lysine residues. Length = 90 |
| >gnl|CDD|223914 COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 7e-04
Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQ---QQQQQQQQQLQ 126
K ++ A + +++A Q + Q + Q + + + ++ Q +L
Sbjct: 89 KKGQLLARLDPSAVLQAALDQAEAQLARAQALLAPAELGDLQREAKLAAEKAAVSQAELD 148
Query: 127 MQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
Q LL+ + Q + +
Sbjct: 149 AAQALLRAAEALVEAAQAALASAKLNLEY 177
|
Length = 372 |
| >gnl|CDD|204784 pfam11932, DUF3450, Protein of unknown function (DUF3450) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 74 VAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI--L 131
AA+ L +A QQ Q Q++ + Q Q+ + + +++I L
Sbjct: 15 GAAAAAAASLDQALAAAQQTVAAAAQSQKKIDKW-----ADQTQELLAEIRQLLKEIENL 69
Query: 132 LQRHAQQQQQHQQQHQQQQQQQQQ 155
+ Q Q+ Q Q+ QQQ
Sbjct: 70 RVYNDQLQRLVANQQQEIASLQQQ 93
|
This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 260 amino acids in length. Length = 250 |
| >gnl|CDD|161783 TIGR00237, xseA, exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
I + Q + Q+ + + HQ++ + +Q LQ Q + QQ Q +
Sbjct: 252 IVSPNQDELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEK 311
Query: 144 QQHQQQ----------QQQQQQPPQQPQQQQPQQQQQR 171
+ ++Q +Q++ + ++ Q P Q R
Sbjct: 312 LEKRKQAALNKQLERTRQKKTRLTKRLTQTNPSPQILR 349
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits [DNA metabolism, Degradation of DNA]. Length = 432 |
| >gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 63 FIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ 122
F E AA E + +++ +++ + +QQ+ + + + + +
Sbjct: 24 FDPPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGKAEGRAE 83
Query: 123 QQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQ 159
Q + AQ +Q + Q Q Q Q
Sbjct: 84 GYEAGYQ---EGLAQGLEQGLAEGQAQAAPQAAQLQA 117
|
Length = 246 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 8e-04
Identities = 22/88 (25%), Positives = 35/88 (39%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
L + R Q + Q Q Q Q+Q Q S Q + + Q++ + L A Q
Sbjct: 155 TLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQA 214
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
++ ++ QQ Q QQ+ Q Q
Sbjct: 215 RTEELARRAAAAQQTAQAIQQRDAQISQ 242
|
Length = 499 |
| >gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 9e-04
Identities = 12/97 (12%), Positives = 25/97 (25%), Gaps = 2/97 (2%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
Q + +Q+ H + +++ + Q QQ Q+ QQ
Sbjct: 197 HMNQGLRARQEMMGLGIMAGGVYGVHDGRSKRRLVDRYPQFQQG--QKQVLSPQQRFLHG 254
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTN 183
++ + PP + G
Sbjct: 255 MERYEASGMPPPAEWAGSNGLHVLPGRREEVPRGIFR 291
|
Length = 505 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 9e-04
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 661 LEEHSSLITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSLR-------TFMGHSASVM 712
L+ H+S I D++F+P LA+ S D T+RVW+ + S++ GH +
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 713 SLDFHPNKDDLICSCDGDGEIRYWSINN 740
+D++P ++CS D + W I N
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN 157
|
Length = 568 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.4 bits (98), Expect = 0.001
Identities = 53/237 (22%), Positives = 83/237 (35%), Gaps = 28/237 (11%)
Query: 460 PAGSVTLDGSMSNSFRGNDQVSKNQ---TGRKRKQPVSSSGPANSSGTANTAGPSPSSAP 516
P GS+ GS + R D S + T V S + + +
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVR- 309
Query: 517 STPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSN----QLWDDKDLELRAD 572
T + S+ H G S + F DG+ ++ S+ +LWD + +
Sbjct: 310 -LWDLETGKLLSSLTLKGHEGPVSS--LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366
Query: 573 MDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFS 632
++ S+ + + + + D R D+S G + + TS+V FS
Sbjct: 367 LEGHSNVLSVSFSPDGRVV--SSGSTDGTVRLWDLSTGSLLRNLDGH---TSRVTSLDFS 421
Query: 633 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 689
DGK LA+G D LW T V FSP LA+ S D +V
Sbjct: 422 PDGKSLASGSSDNTIRLWDLKTSLKS------------VSFSPDGKVLASKSSDLSV 466
|
Length = 466 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 0.001
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQ-----QPPHQQQQQQQQQQQQLQMQQILL 132
Y + Q A + Q QQ QQ Q Q QQ Q QP +QQ QQ Q Q + LL
Sbjct: 791 YQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLL 850
Query: 133 QRHAQQQQQHQ 143
R+ + H+
Sbjct: 851 MRNGDSRPLHK 861
|
Length = 1355 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.001
Identities = 23/90 (25%), Positives = 28/90 (31%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E + A E QQ Q Q Q + QQP QQ +Q Q Q
Sbjct: 370 EPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPA 429
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
QQ +Q Q +QQ Q
Sbjct: 430 QQPYYAPAPEQPVAGNAWQAEEQQSTFAPQ 459
|
Length = 1355 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 19/119 (15%), Positives = 67/119 (56%), Gaps = 19/119 (15%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQ--------QQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
EK EVA + Q +A +++++ Q++ +++++Q+++ ++ +++++
Sbjct: 179 EKEREVAR--LRAQQEEAEDEREELDELRADLYQEEYERKERQKEK------EEAEKRRR 230
Query: 121 QQQQLQ---MQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
Q+Q+LQ +QI + Q+++ +++ ++++ ++Q + +Q+ ++++ + H
Sbjct: 231 QKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEH 289
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQS-QQPPHQQQQQQQQQQQQLQMQQILLQRHA-- 136
ETQ ++ Q ++ Q + S +QPP +Q + + Q A
Sbjct: 19 ETQKELSKLQLSHEEAQSSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPA 78
Query: 137 ----QQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
Q QQ Q Q Q Q P Q Q PQQ +++
Sbjct: 79 PQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQE 119
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.001
Identities = 12/90 (13%), Positives = 63/90 (70%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
T+L+ + +Q ++Q++Q++Q++++Q+ Q +++ +++ +++L+ ++ ++ ++ +
Sbjct: 25 TRLLAEKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAR 84
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ +++ +++ +++++ Q+ Q++ +Q+++
Sbjct: 85 EKEEKAKRKAEEEEKQEQEEQERIQKQKEE 114
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
Q + QQ Q + + Q QQ+ +Q + +I L Q+ + Q+
Sbjct: 61 LNPQSYVETTPPPFQQPQTEESESENEVQIQQEVEQSVDEIKITLP---NQEPAYYMQNH 117
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDS 190
+ + Q P QPQ Q P Q + G +S
Sbjct: 118 RSEPIQ---PTQPQYQSPTQTNVASMTIEETQSPNVPIEGINS 157
|
Length = 332 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 99 QQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQ 158
Q + QS Q + + + Q+ Q + QQ + Q +QQQ +
Sbjct: 433 QSIRFLPQSDQQRPVSRGRGRGQRGPRSQPQNQRR---QQNRGRQSSQPPRQQQNRSNQN 489
Query: 159 QPQQQQPQQQQQRRDGAHLLNGNT 182
+Q Q Q R G + L T
Sbjct: 490 NQRQSQGPNQGPRGQGGYNLRPRT 513
|
Length = 582 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A +Q Q QQ+ Q Q+ Q +Q +++++Q Q+L+ Q L++ Q + + Q
Sbjct: 225 AAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQA 284
Query: 146 HQQQQQQQQQPPQQPQ------QQQPQQQQQRRDGAHLL 178
+ + +QQ Q+ Q Q+ Q Q Q + A LL
Sbjct: 285 YVRLRQQAAAT-QRGQVLAGAAQRVAQAQAQAQAQAQLL 322
|
Length = 499 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL---LQRHAQQQQ 140
I+ RE+Q Q+ + Q + +Q+ + +Q + +QQ Q Q+L QR AQ Q
Sbjct: 254 IRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQRGQVLAGAAQRVAQAQA 313
Query: 141 QHQQQHQQQQQ-------QQQQPPQQPQQQQP 165
Q Q Q Q + ++ P++ ++Q+P
Sbjct: 314 QAQAQAQLLSSANRPAALRLRRSPRRGRRQRP 345
|
Length = 499 |
| >gnl|CDD|182398 PRK10350, PRK10350, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.001
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
+Q+ Q Q Q QQ QQ+ +QQ Q + QQQ Q Q+ QR Q Q + Q
Sbjct: 36 QQRMQTQMQTQQIQQKGMLNQQLKTQTRLQQQHLQNQINNNS---QRVQQGQPGNNPARQ 92
Query: 148 QQQQQQQ--------QPPQQPQQQQPQQQQQRRD 173
Q P QQ +++ D
Sbjct: 93 QMLPNTNGGMLNSNRNPDSSLNQQHMLPERRNGD 126
|
Length = 145 |
| >gnl|CDD|213398 cd12191, gal11_coact, gall11 coactivator domain | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 15/90 (16%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQ-----QQQQQQLQMQ----------QILLQRHAQ 137
QQQQQ QQQQQQQ Q P Q ++ + LQ++
Sbjct: 1 PQQQQQPQQQQQQQMPQNPQLVNMMDNMPIPPQLLAKIPNLPPEVKTWRQLKAWLQQNNI 60
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
Q +Q + QQ Q Q+ QQQQ QQ
Sbjct: 61 PPQAMEQIKEVQQTHFQLLMQRRQQQQQQQ 90
|
Gall11/MED15 acts in the general regulation of GAL structural genes and is required for full expression for several genes in this pathway, including GALs 1,7, and 10 in Saccharomyces cerevisiae. GAL11 function is dependent on GCN4 functionality and binds GCN4 in a degenerate manner with multiple orientations found at the GCN4-Gal11 interface. Length = 90 |
| >gnl|CDD|161783 TIGR00237, xseA, exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 21/99 (21%), Positives = 44/99 (44%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+L +A + Q++ + +Q Q Q P ++ QQ Q ++ + +Q L + ++
Sbjct: 268 NVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAALNKQLERT 327
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
+Q + + ++ Q PQ + Q +Q RR A
Sbjct: 328 RQKKTRLTKRLTQTNPSPQILRAQTRTEQLNRRLNALKN 366
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits [DNA metabolism, Degradation of DNA]. Length = 432 |
| >gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 80 ETQLIKAREQQQQ--QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
E +L++ +E+Q+Q +Q Q+ +Q +QQ + P ++ Q+ Q Q Q
Sbjct: 99 EKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQPAGVNVANNPQPQVQ 158
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
Q Q + Q+ P Q +P Q
Sbjct: 159 PQFGPNPQQRINPQRFGFPMQPNMGMRPGFNQ 190
|
This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence. Length = 279 |
| >gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1) | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 0.001
Identities = 90/481 (18%), Positives = 152/481 (31%), Gaps = 51/481 (10%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
Q QQ + + +++Q QQQQ Q L+ +Q+++ ++Q +Q
Sbjct: 248 QPQQHETSPAESYGAAAAGLNSRENKRKQMLPQQQQQSFDQ-LVSPRKEQKREERRQLKQ 306
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYE 208
Q + Q+ +Q QQ+ Q D G L DS R N A+A
Sbjct: 307 QLRDMQKQLRQLQQKYVQIYDSTDDSTDDDIHEDIGNLSEDSPSRSNSLDASAPDNGGDR 366
Query: 209 EKLKLPVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSP 268
+ + D M + P + AAA +
Sbjct: 367 PRSDNEM----SDLDMMSKMMSHKPMHPNKPGGFVDMDRAAA---------------LYE 407
Query: 269 QVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEP 328
Q Q + T KS++ GS G + G TLK T L
Sbjct: 408 QEQRMVKDDGKGTA-PKSDLPEREGMLRQSCIGSPGPSSGLDGEGLAETLKQELNTSLSQ 466
Query: 329 L-----------RSGLLQQQKPFIQAPQPFHQIQMLTPQHQQLLLAQQNLTSPSASDESR 377
+ R L +Q KP AP+ + ML Q +L +++ + + +D +
Sbjct: 467 VVDTVVKRFVHQRRALSKQAKPERAAPEQLFKDLMLPSQ----MLDRKSPRTHTVNDRGQ 522
Query: 378 RFRMLLNNRSMSLGKDGLSNSVGDVVSNV------GSPLPAGGHLLPRGDTDM---LIKQ 428
F + +S + D +NV SP P+ + L
Sbjct: 523 CF----GDPDISTAAMFIIPKPPDSFANVAAAALYNSPFCMPQTPQPQDAPEQTEALSLV 578
Query: 429 QQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRK 488
+ T + ++ + L +D +GPA +S +
Sbjct: 579 VTPKKKRHKVTDTRITPRTVSRILALRDAVGPAAGTHHQPLHPSSLSASMGFHPPPFRHP 638
Query: 489 RKQPVSSSGPANSSGTANTAGPSPSSAPS--TPSTHTPGDVISMPALPHSGTTSKPLMMF 546
P++ + P S + P +P PS PG P LP T+ P ++
Sbjct: 639 FPLPLTVAIPNPSLHQSEVFMGYPFQSPHLGAPSGSPPGKDRDSPDLPRPTTSLHPKLLS 698
Query: 547 G 547
Sbjct: 699 A 699
|
The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system. Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm. This family contains an atypical homeobox domain. Length = 908 |
| >gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 97 QQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
+ + + QQQ QQQQ++QQQQ++ Q Q IL Q
Sbjct: 3 RARLAELQQQQGGLEEQQQQEEQQQQEEAQKQAILRQ 39
|
This domain is believed to bind double-stranded DNA of 20 bases length. Length = 105 |
| >gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 7/48 (14%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL 131
I+ + QQQQ ++QQQQ+ +QQQQ++ Q+Q ++QIL
Sbjct: 1 IRRARLAELQQQQGGLEEQQQQE-------EQQQQEEAQKQAILRQIL 41
|
This domain is believed to bind double-stranded DNA of 20 bases length. Length = 105 |
| >gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 19/127 (14%), Positives = 30/127 (23%), Gaps = 9/127 (7%)
Query: 95 QQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
Q Q Q S++ + Q+ M QQ ++ Q
Sbjct: 11 QAQSQVHTGAASSKKSARPHRAYANFSAGQMGMPPYTTPPLQQQSRRQIDQAATAMHNTG 70
Query: 155 QPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLP 214
P P Q Q++ + G P N + E P
Sbjct: 71 ANNPAPSVMSPAFQSQQKFSS---------PYGGSMADGTAPKPTNPLVPVDLFEDQPPP 121
Query: 215 VLRDSLD 221
+ L
Sbjct: 122 ISDLFLP 128
|
Length = 861 |
| >gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 15/47 (31%), Positives = 17/47 (36%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ 128
QL+ R Q Q Q Q QQ QQ QQQ + Q
Sbjct: 109 QLLGGRPQGDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQP 155
|
Length = 172 |
| >gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 15/46 (32%), Positives = 17/46 (36%)
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
Q Q + Q QQ + QQ QQQ PQQ PQ
Sbjct: 116 QGDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQPAPQPAA 161
|
Length = 172 |
| >gnl|CDD|220964 pfam11068, DUF2869, Protein of unknown function (DUF2869) | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 85 KAREQQQQQQQQQQQQQQQ-QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
+ + + Q+Q Q +Q+ QQ + Q Q+ + ++Q QQ +Q+Q Q+ Q++ +
Sbjct: 20 ELQAELQEQLTQLEQELQQLEFQGQKAIKEIRKQSAQQIEQIQ------QQVEQERAKRL 73
Query: 144 QQHQQQQQQQQQ 155
+Q Q Q +Q
Sbjct: 74 EQKNQLLFQIEQ 85
|
This bacterial family of proteins has no known function. Length = 131 |
| >gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.001
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ 122
+Q +QQQQQ QQQ Q + P QQ Q QQ
Sbjct: 49 DQTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQQ 83
|
Length = 84 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 10 KMLDVYIHDYLVKRDLKASAQAFQAEGKVS 39
L+ I +YL++ + +A+ Q E +S
Sbjct: 4 SELNRLILEYLLRNGYEETAETLQKESGLS 33
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|221016 pfam11180, DUF2968, Protein of unknown function (DUF2968) | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+ I A E + ++ Q Q Q Q+Q Q +QQQ + + + QR A Q Q
Sbjct: 119 RQIAASEARAERLQADLQLAQAQEQ--------QVAARQQQARQEAVALEAQRQAAQAQL 170
Query: 142 HQQQHQQQQQQQQQ 155
+ Q Q +Q Q QQ
Sbjct: 171 RKLQRQIRQLQAQQ 184
|
This family of proteins has no known function. Length = 192 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 104 QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ--QQQPPQQPQ 161
Q +Q +Q Q +QQ Q+ ++ +Q+Q Q Q+Q QQ +QQ Q
Sbjct: 113 QLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQS 172
Query: 162 QQ--QPQQQQQR 171
+ Q QQQ R
Sbjct: 173 RTTEQSWQQQTR 184
|
Length = 319 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
+Q +Q + Q+QQ Q Q Q QQ + L + + Q + Q QQ +
Sbjct: 783 EQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENT 842
Query: 150 QQQQQQPPQQPQQQQPQQQQQ 170
+Q + Q Q +QQQQ
Sbjct: 843 TRQGEIRQQLKQDADNRQQQQ 863
|
Length = 1047 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 81 TQLIKAREQQQQQQQQ--QQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
QL + E Q+QQ Q Q Q Q Q P +Q Q ++ Q+ AQQ
Sbjct: 783 EQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQL-----AQQ 837
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
+++ + + +QQ +Q QQQQ QQ
Sbjct: 838 LRENTTRQGEIRQQLKQDADNRQQQQALMQQ 868
|
Length = 1047 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 25/110 (22%)
Query: 89 QQQQQQQQ------QQQQQQQQQQSQQPPHQQQQQQQQQQQQL----------------Q 126
QQQQQQ + QQ+ + QQ Q +++ Q QL +
Sbjct: 238 AQQQQQQSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWE 297
Query: 127 MQQILLQRHAQQQQQHQQ---QHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
Q A +QQ ++ + Q + + +Q + Q Q++
Sbjct: 298 RIQEQSAALAHTRQQIEEVNTRLQSTMALRARIRHHAAKQSAELQAQQQS 347
|
Length = 1047 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
E+ Q +Q +Q + Q+Q Q Q Q Q QQ + + L +Q QQ Q
Sbjct: 776 EETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLA 835
Query: 148 QQQQQ----QQQPPQQPQQQQPQQQQQR 171
QQ ++ Q + QQ +Q +QQQ+
Sbjct: 836 QQLRENTTRQGEIRQQLKQDADNRQQQQ 863
|
Length = 1047 |
| >gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 112 HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
QQQ Q Q+ Q QQ+ + AQ+ Q+ Q + QQQ + ++Q Q+Q
Sbjct: 54 GQQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQ 112
|
Length = 391 |
| >gnl|CDD|204848 pfam12203, HDAC4_Gln, Glutamine rich N terminal domain of histone deacetylase 4 | Back alignment and domain information |
|---|
Score = 38.0 bits (88), Expect = 0.002
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
+QQQQ Q+Q + Q+ + +Q + Q Q+ + Q Q++L + Q+ + +++ +QQ
Sbjct: 19 KQQQQIQKQLLIAEFQKQHENLTRQHEAQLQEHLKQQ-QELLAMKRQQELLEKERKLEQQ 77
Query: 150 QQQQQQPPQQPQQQ 163
+Q+Q+ + +QQ
Sbjct: 78 RQEQELEKHRREQQ 91
|
This domain is found in eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam00850. The domain forms an alpha helix which complexes to form a tetramer. The glutamine rich domains have many intra- and inter-helical interactions which are thought to be involved in reversible assembly and disassembly of proteins. The domain is part of histone deacetylase 4 (HDAC4) which removes acetyl groups from histones. This restores their positive charge to allow stronger DNA binding thus restricting transcriptional activity. Length = 92 |
| >gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL 131
++ Q E+ ++ +QQ+ QQ+QQ+ Q +Q Q QQ+ QQ+QQ +Q I
Sbjct: 65 LQKQAATLSEEARKAKQQELQQKQQELQQKQ---QAAQQELQQKQQELLQPIY 114
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQ-----QQQQQQQQSQQPPHQQQQQQQQQQQ 123
++ + + + Q AR +Q Q Q + +Q++Q + Q Q+Q Q
Sbjct: 123 QELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASAT 182
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQ-----QPQQQQPQQQQQRRD 173
QL+ Q + L+ + Q +Q Q + Q + QQ Q Q+RD
Sbjct: 183 QLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRD 237
|
Length = 499 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 15/80 (18%), Positives = 25/80 (31%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
Q Q Q + QQ+ QL QQ Q++ + Q Q Q + Q
Sbjct: 128 VTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQ 187
Query: 152 QQQQPPQQPQQQQPQQQQQR 171
Q + + ++
Sbjct: 188 QTDGAGDDESEALVRLREAD 207
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|204565 pfam10956, DUF2756, Protein of unknown function (DUF2756) | Back alignment and domain information |
|---|
Score = 38.1 bits (88), Expect = 0.002
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
QQ+ Q Q Q QQ QQ Q Q Q + QQQ LQ Q L + Q+ QQ Q + +Q
Sbjct: 36 QQRMQTQMQTQQIQQKGMLNQQLQTQTRLQQQHLQNQ---LNNNQQRVQQGQPGNLNARQ 92
Query: 152 Q 152
Q
Sbjct: 93 Q 93
|
Some members in this family of proteins are annotated yhhA however currently no function is known. The family appears to be restricted to Enterobacteriaceae. Length = 104 |
| >gnl|CDD|161783 TIGR00237, xseA, exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 18/98 (18%), Positives = 39/98 (39%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
Q++ + +Q +Q P + QQ Q ++L+ ++ ++ + ++
Sbjct: 276 DTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAALNKQLERTRQKKTRLT 335
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLL 186
++ Q P Q + Q + +Q R L N N L
Sbjct: 336 KRLTQTNPSPQILRAQTRTEQLNRRLNALKNAQANLKL 373
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits [DNA metabolism, Degradation of DNA]. Length = 432 |
| >gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional | Back alignment and domain information |
|---|
Score = 38.0 bits (88), Expect = 0.002
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQ 124
+K + Q +QQQQQ QQQ Q Q QQ Q Q
Sbjct: 42 VKEMSKDDQTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQ 82
|
Length = 84 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 8/111 (7%), Positives = 50/111 (45%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ ++ +++++ ++++ +Q + ++ ++ + + + ++ ++ Q
Sbjct: 153 ATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQG 212
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQN 195
++++ ++ ++ ++++ ++ R D G+ +G G R+
Sbjct: 213 DRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRG 263
|
Length = 672 |
| >gnl|CDD|234937 PRK01294, PRK01294, lipase chaperone; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 27/112 (24%), Positives = 38/112 (33%), Gaps = 16/112 (14%)
Query: 76 ASYIETQLIKAREQQQQQQQQQQ-----QQQQQQQQSQQPPHQQQQQ----------QQQ 120
A+ R Q+ Q+QQ Q Q S Q + Q +Q
Sbjct: 213 AALEAQLPEDLRAALQESQRQQALLQQLAQLQASGASPQELRLMRAQLVGPEAAQRLEQL 272
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
QQ+ QQ AQ+ Q Q +Q Q Q +QQ+ Q+ R
Sbjct: 273 DQQRAAWQQRYDDYLAQRAQILNAAGLSPQDRQAQ-IAQLRQQRFSPQEALR 323
|
Length = 336 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 647 AVLWHTDTLKSKTN---LEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLR 702
AVL HTD K +N L I DV F+P P +L T+S D T+ W G +
Sbjct: 54 AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN 113
Query: 703 T------FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 753
GH+ V + FHP+ +++ S D + W + G V K + Q
Sbjct: 114 ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170
|
Length = 493 |
| >gnl|CDD|221776 pfam12795, MscS_porin, Mechanosensitive ion channel porin domain | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 15/94 (15%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
++T+ +A QQQ + +++ Q+ + + Q Q Q+ LQ + L+ ++
Sbjct: 111 LQTRPERA---QQQLSEARRRLQEIRNRLQALSPGGTPLAQAQRTLLQAELAALKAQIEE 167
Query: 139 QQQHQQQHQQQQQ--QQQQPPQQPQQQQPQQQQQ 170
+ + +Q+ + Q+ + + ++ + + Q
Sbjct: 168 LELELLSNNNRQELLRLQRDLLKKRIERLEAELQ 201
|
The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this MscS_porin is towards the N-terminal of the molecules. The high concentration of negative charges at the extracellular entrance of the pore helps select the cations for efflux. Length = 239 |
| >gnl|CDD|197400 cd10164, ClassIIa_HDAC5_Gln-rich-N, Glutamine-rich N-terminal helical domain of HDAC5, a Class IIa histone deacetylase | Back alignment and domain information |
|---|
Score = 38.3 bits (88), Expect = 0.002
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 86 AREQQQQQQQQQ-QQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
REQQ QQ+ +QQQQ Q+Q Q+Q + +Q ++Q+Q+ L R +Q QQ
Sbjct: 4 LREQQLQQELLLLKQQQQLQKQLLFAEFQKQHEHLTRQHEVQLQKHLKVRAELFSEQQQQ 63
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ ++QQ+ Q+ ++QQ Q++ +++
Sbjct: 64 EILAAKRQQELEQQRKREQQRQEELEKQ 91
|
This family consists of the glutamine-rich domain of histone deacetylase 5 (HDAC5). It belongs to a superfamily that consists of the glutamine-rich N-terminal helical extension to certain Class IIa histone deacetylases (HDACs), including HDAC4, HDAC5 and HDCA9; it is missing from HDAC7. This domain confers responsiveness to calcium signals and mediates interactions with transcription factors and cofactors, and it is able to repress transcription independently of the HDAC C-terminal, zinc-dependent catalytic domain. It has many intra- and inter-helical interactions which are possibly involved in reversible assembly and disassembly of proteins. HDACs regulate diverse cellular processes through enzymatic deacetylation of histone as well as non-histone proteins, in particular deacetylating N(6)-acetyl-lysine residues. Length = 97 |
| >gnl|CDD|221042 pfam11244, Med25_NR-box, Mediator complex subunit 25 C-terminal NR box-containing | Back alignment and domain information |
|---|
Score = 37.8 bits (87), Expect = 0.002
Identities = 22/75 (29%), Positives = 24/75 (32%)
Query: 100 QQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQ 159
QQQQ Q QQQ QQQQ Q QQ QQ + Q Q
Sbjct: 1 HQQQQGQPGLAAMQQQAMGQQQQGHQLPMPGPAQFPLQQLQQMRGPGGGQMSMQAGGRAP 60
Query: 160 PQQQQPQQQQQRRDG 174
Q Q + G
Sbjct: 61 QQMHALQPLLGQSGG 75
|
The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA, domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and this C-terminal NR box-containing domain (646-650) from C69-747. The NR box of MED25 is critical for its recruitment to the promoter, probably through an interaction with pre bound RAR. Length = 89 |
| >gnl|CDD|131526 TIGR02473, flagell_FliJ, flagellar export protein FliJ | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 13/82 (15%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 80 ETQLIKAREQQQQQQQQ-QQQQQQQQQQSQQPPHQQQQ-----QQQQQQQQLQMQQILLQ 133
+ +L KA+ + ++ + Q QQ + +++ QQ + + Q+ ++ +Q
Sbjct: 19 KLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQ 78
Query: 134 RHAQQQQQHQQQHQQQQQQQQQ 155
+ Q+ QQ+ + ++++ +
Sbjct: 79 QQQQELALLQQEVEAKRERLLE 100
|
Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems. Length = 141 |
| >gnl|CDD|219111 pfam06625, DUF1151, Protein of unknown function (DUF1151) | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 11/64 (17%), Positives = 41/64 (64%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ 152
Q+ + Q+ ++++ Q +Q+++++ ++ Q ++++ L++R + +Q ++ ++ ++Q
Sbjct: 48 NQKPELQRVLEKRKRDQVLKEQKEEEEAKRLQSELERELMKRAQKLEQLELEKAKEDEEQ 107
Query: 153 QQQP 156
+Q P
Sbjct: 108 EQIP 111
|
This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 122 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 14/58 (24%), Positives = 21/58 (36%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
QQ Q QQ Q QQ +Q Q QQQ++ Q+ + + +
Sbjct: 291 GQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREALSQEEAKRAKRRHK 348
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 14/133 (10%), Positives = 66/133 (49%), Gaps = 20/133 (15%)
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPP-------HQ 113
D I R E+ A E Q E + +++ +++++++++ ++ +
Sbjct: 102 DEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQRE 161
Query: 114 QQQQQQQQQQQLQMQQI----LLQRHAQQQQQHQQQHQQ---------QQQQQQQPPQQP 160
+ +++++++ + + ++ + R QQ++ + + ++ Q++ +++ Q+
Sbjct: 162 KAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKE 221
Query: 161 QQQQPQQQQQRRD 173
+++ ++++Q+++
Sbjct: 222 KEEAEKRRRQKQE 234
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 90 QQQQQQQQ----------QQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ--ILLQRHAQ 137
QQQQQQ QQ+ ++QQ+ Q +++ Q Q L + Q L+ H +
Sbjct: 238 AQQQQQQSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWE 297
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
+ Q+ +QQ ++ + Q + + R A
Sbjct: 298 RIQEQSAALAHTRQQIEEVNTRLQSTMALRARIRHHAAK 336
|
Length = 1047 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.003
Identities = 14/93 (15%), Positives = 62/93 (66%), Gaps = 4/93 (4%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E + A +++Q ++Q++Q++Q++++Q + Q + ++++ +++ +++ + A++Q
Sbjct: 23 EATRLLAEKRRQAREQREQEEQERREQEE----QDRLEREELKRRAAEERLRREEEARRQ 78
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
++ + + ++++ +++ ++ Q+Q+ Q++ Q++
Sbjct: 79 EEERAREKEEKAKRKAEEEEKQEQEEQERIQKQ 111
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.003
Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 4/109 (3%)
Query: 65 ARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQ 124
K + L +++Q ++ H ++ QQ QQ
Sbjct: 183 LMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSH 242
Query: 125 LQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ Q + ++Q + QQ +Q + + ++ + Q+ ++ Q+R +
Sbjct: 243 AYLTQ--KREAQEEQLKKQQLLKQLRARIEE--LRAQEAVLEETQERIN 287
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 14/71 (19%), Positives = 32/71 (45%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
K Q+ Q +QQ + + + +QQ + Q +Q Q++Q+L Q+ A +
Sbjct: 652 KQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDD 711
Query: 145 QHQQQQQQQQQ 155
+ + ++ +
Sbjct: 712 FRELRTERLAK 722
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.003
Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 15/112 (13%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQ---QQQQQQQQQQQLQMQQILLQRH 135
+ +L AR+ + QQ+ + +Q Q Q Q++Q + Q Q LQ Q LQ
Sbjct: 121 VRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQAS 180
Query: 136 AQQ-----------QQQHQQQHQQQQQQQQQPPQQPQQ-QQPQQQQQRRDGA 175
A Q Q +Q+ Q + + ++ + Q+ A
Sbjct: 181 ATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQA 232
|
Length = 499 |
| >gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 6/116 (5%)
Query: 63 FIARTNEKHSEVAASYIETQLIKAREQQQQQQ--QQQQQQQQQQQQSQQPPHQQQQQQQQ 120
+ R + E+AA +E L+ + + +Q + Q + Q ++ + + QQ
Sbjct: 26 RLGRLEQMLGELAAV-LEQLLLLLAFRAEAEQLRTFARSLQALNLELIQELNELKARLQQ 84
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
Q Q + Q LL + Q + Q+ + + + + QQ ++
Sbjct: 85 QLLQSREQLQLLI---ESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPL 137
|
Length = 448 |
| >gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.003
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI 130
++ K+ ++ + Q +QQQQQ Q Q P+Q + Q QQ Q QQ+
Sbjct: 36 RIFKSEVKEMSKDDQTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQQV 84
|
Length = 84 |
| >gnl|CDD|217298 pfam02948, Amelogenin, Amelogenin | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.003
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 96 QQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM---QQILLQRHAQQQQQHQQQHQQQQQQ 152
Q QQQQ + PH Q QQ + + ++ Q Q QH Q
Sbjct: 55 PQMPQQQQSAHPKLTPHHQLLILPPQQPMMPVPGHHPMVPMTGQQPHLQPPAQHPLQPTY 114
Query: 153 QQQP-PQQPQQQQPQQQQQ 170
Q P PQQP QP Q Q
Sbjct: 115 GQNPQPQQPTHTQPPVQPQ 133
|
Amelogenins play a role in biomineralisation. They seem to regulate the formation of crystallites during the secretory stage of tooth enamel development. thought to play a major role in the structural organisation and mineralisation of developing enamel. They are found in the extracellular matrix. Mutations in X-chromosomal amelogenin can cause Amelogenesis imperfecta. Length = 174 |
| >gnl|CDD|233816 TIGR02302, aProt_lowcomp, TIGR02302 family protein | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.003
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL-LQRHAQQQQQHQQQ 145
Q +Q QQ + QQ +P + +QQ Q M QI L R + Q Q
Sbjct: 534 AAMQTYMRQLAQQLRNNPQQLARPLDPNTKVLRQQDLQNMMDQIENLARSGDRDQAKQLL 593
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q QQ QP Q Q Q
Sbjct: 594 SQLQQMMNNLQMGQPGQGQQMGDQS 618
|
Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model. Length = 851 |
| >gnl|CDD|222709 pfam14362, DUF4407, Domain of unknown function (DUF4407) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 19/135 (14%), Positives = 39/135 (28%), Gaps = 30/135 (22%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
I+T L QQ++Q Q Q + + Q + + Q + + AQ
Sbjct: 110 IDTVL--LEIQQEEQAAAQAQVAAGFRPKIAALTAEIAALQAEIDEAQAEVNAAYQEAQC 167
Query: 139 Q----------------QQHQQQHQQQQQQ-----------QQQPPQQPQQQQPQQQQQR 171
+ ++ +++ Q + Q Q + +Q
Sbjct: 168 EAEGTGGTGVAGKGPVYKEKREKLDAAQARLETLKARLDAAIAQLEAQKAALERNRQAAV 227
Query: 172 RDGAHLLNGNTNGLL 186
+ +GLL
Sbjct: 228 AE-KQARIEANDGLL 241
|
This family of proteins is found in bacteria. Proteins in this family are typically between 366 and 597 amino acids in length. There is a single completely conserved residue R that may be functionally important. Length = 297 |
| >gnl|CDD|234354 TIGR03789, pdsO, proteobacterial sortase system OmpA family protein | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 113 QQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
Q QQ+QQ L +Q L++ + QQ Q + QQ QQQ
Sbjct: 84 QHIAQQRQQMVALTQKQQALEQLEAEYQQAQVHLETLQQDQQQ 126
|
A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. Length = 239 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 10/97 (10%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
+E ++ + E+ + ++ + +++ ++ ++ Q +++ ++ +Q+ + L R +
Sbjct: 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+Q +++ Q ++ + + + ++ ++R + A
Sbjct: 742 VEQLEERIAQLSKELTE-----LEAEIEELEERLEEA 773
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A QQ Q QQ Q Q + P ++Q Q QQQ+ + Q A++ ++ +
Sbjct: 294 APLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREAL----SQEEAKRAKRRHKI 349
Query: 146 HQ 147
Sbjct: 350 VS 351
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.004
Identities = 12/71 (16%), Positives = 38/71 (53%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
+K ++ +Q++ +Q ++++ + Q QQ ++ ++Q Q +Q+ Q +Q Q+++
Sbjct: 92 LKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEA 151
Query: 144 QQHQQQQQQQQ 154
+ + + +
Sbjct: 152 AKAKAAAEAAK 162
|
Length = 387 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 10/86 (11%), Positives = 45/86 (52%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+A EQ +Q++ +Q+ ++ + + +Q +++Q+Q ++ + +Q + + + ++
Sbjct: 84 RAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKK 143
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQ 170
++ ++Q ++ + + +++
Sbjct: 144 AKEEAKKQAEEEAKAKAAAEAKKKAA 169
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 14/87 (16%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
+Q + Q+ Q +QQS + + +++QQ + Q++Q+ Q +Q +Q
Sbjct: 647 ARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQL-----DAQLKQLLEQQ 701
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQRRD 173
Q + + ++ + ++ + +
Sbjct: 702 QAFLEALK---DDFRELRTERLAKWQV 725
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 15/85 (17%), Positives = 16/85 (18%), Gaps = 2/85 (2%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQR--HAQQQQQHQQQ 145
Q Q Q Q+ Q QQQ A Q
Sbjct: 55 APPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQT 114
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q Q P Q Q
Sbjct: 115 EPGQLYPVQVPVMVTQNPANSPLDQ 139
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.004
Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 8/103 (7%)
Query: 76 ASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ--QQQQQLQMQQILLQ 133
S A+ +Q+Q +Q Q + + +Q + ++Q ++
Sbjct: 102 PSNGGGVEESAQLTAEQRQLLEQMQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKA 161
Query: 134 RHAQQQQQHQQQHQQQ------QQQQQQPPQQPQQQQPQQQQQ 170
R A+ Q+ + + +Q+Q+ P+Q + Q +
Sbjct: 162 RTAEAQKTPVETEKIASKVKEAKQKQKALPKQTAETQSNSKPI 204
|
FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis [Cellular processes, Cell division]. Length = 298 |
| >gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional | Back alignment and domain information |
|---|
Score = 36.9 bits (85), Expect = 0.004
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 132 LQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ + Q +Q QQQ QQQ Q QP QQ Q QQ
Sbjct: 45 MSKDDQTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQQ 83
|
Length = 84 |
| >gnl|CDD|221776 pfam12795, MscS_porin, Mechanosensitive ion channel porin domain | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 13/79 (16%), Positives = 37/79 (46%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
E +KA+ ++ + + +Q+ + Q+ +++ ++ + + Q I +R A+
Sbjct: 156 AELAALKAQIEELELELLSNNNRQELLRLQRDLLKKRIERLEAELQALQNAINRKRLAES 215
Query: 139 QQQHQQQHQQQQQQQQQPP 157
+Q ++ + +Q PP
Sbjct: 216 EQAVEEAERLAEQSAGLPP 234
|
The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this MscS_porin is towards the N-terminal of the molecules. The high concentration of negative charges at the extracellular entrance of the pore helps select the cations for efflux. Length = 239 |
| >gnl|CDD|233816 TIGR02302, aProt_lowcomp, TIGR02302 family protein | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.004
Identities = 24/99 (24%), Positives = 39/99 (39%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
Q Q QQ Q +QQ + ++QQQ + + ++ Q + + Q Q
Sbjct: 607 QPGQGQQMGDQSGDMEQQMNKLGELMRKQQQLRDETFKLDQDQRRDRMRGQDGEQNFGDD 666
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLG 187
QQ QP QP ++ Q+ + L + GL G
Sbjct: 667 MPQQDGQPNGQPNLHDRLRKLQQEEAKRGLGQSQGGLKG 705
|
Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model. Length = 851 |
| >gnl|CDD|226204 COG3679, COG3679, Regulatory protein involved in competence development and sporulation [Replication, recombination and repair; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 16/77 (20%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 72 SEVAASYIET-QLIKAREQQQQQ----QQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ 126
SE + E + ++A E+ ++ +Q Q+Q Q++Q+ +P +++ + Q+ +Q++Q
Sbjct: 19 SEEYQALKEAKRAVEADEEAKKLFEEFRQLQEQFQEKQRFGYEPDYEEVTKAQELKQEIQ 78
Query: 127 MQQILLQ-RHAQQQQQH 142
+ + + A+Q
Sbjct: 79 LNEKVSAFMEAEQALSS 95
|
Length = 118 |
| >gnl|CDD|236362 PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.004
Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQS---QQPPHQQQQQQQQQQQQLQMQQILLQR 134
YIE QL + R+ Q Q + + Q +Q QQ +
Sbjct: 79 YIEGQL-RTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGQQQGGWGQ 137
Query: 135 HAQQQQQHQQQHQQQQQQQQQPPQQPQQQQP 165
Q Q +Q Q + QQ P P + P
Sbjct: 138 PQQPQGGNQFSGGAQSRPQQSAPAAPSNEPP 168
|
Length = 177 |
| >gnl|CDD|217451 pfam03249, TSA, Type specific antigen | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 76 ASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRH 135
A+ I+ + ++ QQQ Q QQQQ Q Q++ + +Q QL + LQRH
Sbjct: 297 ANQIQLNFVIPQQAQQQGQGQQQQAQATAQEAAAAAAVRLLNGNEQIIQLYKDLVKLQRH 356
Query: 136 AQQQQQHQQ-QHQQQQQQQQQPPQQPQQQQPQQQQQRRDG 174
A ++ ++ QQ++ Q +++Q ++ + G
Sbjct: 357 AGIKKAMEKLAAQQEEDAGNQGGGDCKKKQGASEKSKEGG 396
|
There are several antigenic variants in Rickettsia tsutsugamushi, and a type-specific antigen (TSA) of 56-kilodaltons located on the rickettsial surface is responsible for the variation. TSA proteins are probably integral membrane proteins. Length = 502 |
| >gnl|CDD|225615 COG3073, RseA, Negative regulator of sigma E activity [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 6/99 (6%)
Query: 74 VAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPH------QQQQQQQQQQQQLQM 127
A + Q + Q+ + Q P Q Q Q+Q +
Sbjct: 115 SLAVIVGVQPYNGKSAASQEPETPVLQTLPLNGKAAPVSLAAPSEATQAPDQLNQEQRRR 174
Query: 128 QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQ 166
+LQ + Q++ H +Q Q Q QQ + +
Sbjct: 175 INAMLQDYELQRRLHSEQLASTQSQSQQAAVEVPGIESL 213
|
Length = 213 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 903 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.98 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.98 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.96 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.92 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.92 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.9 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.9 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.9 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.9 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.89 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.89 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.88 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.87 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.87 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.87 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.87 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.86 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.86 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.85 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.85 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.84 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.84 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.84 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.84 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.84 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.83 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.82 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.81 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.81 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.8 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.8 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.79 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.79 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.78 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.77 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.77 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.76 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.76 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.75 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.74 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.74 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.72 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.72 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.71 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.71 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.69 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.69 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.68 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.68 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.67 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.66 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.65 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.65 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.64 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.64 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.63 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.61 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.6 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.6 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.6 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.59 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.58 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.57 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.57 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.56 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.55 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.55 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.54 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.53 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.52 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.52 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.52 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.51 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.48 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.48 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.47 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.47 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.47 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.46 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.46 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.46 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.44 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.44 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.43 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.43 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.43 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.42 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.42 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.42 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.41 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.41 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.38 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.37 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.37 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.36 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.35 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.34 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.31 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.3 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.28 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.28 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.27 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.26 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.24 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.24 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.24 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.23 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.22 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.21 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.2 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.18 | |
| KOG4594 | 354 | consensus Sequence-specific single-stranded-DNA-bi | 99.17 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.16 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.15 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.14 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.14 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.11 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.11 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.11 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.09 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.07 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.06 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.06 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.06 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.0 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.97 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.96 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.95 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.95 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.94 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.92 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.88 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.86 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.84 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.84 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.82 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.79 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.78 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.77 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.76 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.76 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.76 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.74 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.74 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.72 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.71 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.71 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.69 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.65 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.64 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.63 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.63 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.6 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.54 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.52 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.52 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.52 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.52 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.52 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.51 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.5 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.49 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.46 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.42 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.41 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.41 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.38 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.38 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.36 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.32 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.28 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.27 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.24 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.24 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.23 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.22 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.21 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.21 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.2 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.19 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.17 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.15 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.14 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.11 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.11 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.09 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.08 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.03 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.01 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.01 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.01 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.0 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.99 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.98 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.97 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.96 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.93 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.87 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.86 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.81 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.8 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.78 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.78 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.77 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.73 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.68 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.67 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.66 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.65 | |
| PRK10115 | 686 | protease 2; Provisional | 97.63 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.57 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.57 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.54 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.5 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.43 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.35 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.3 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.28 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.28 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.19 | |
| PRK10115 | 686 | protease 2; Provisional | 97.17 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.15 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.13 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.13 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.13 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.11 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.1 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.09 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.07 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.06 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.05 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.03 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.96 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.94 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.94 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.94 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.92 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.82 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.75 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.71 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.68 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.66 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.63 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.53 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.5 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.48 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.45 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.44 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.44 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.4 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.38 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.37 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.33 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 96.3 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.28 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.19 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 96.18 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.15 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 96.11 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.07 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 96.04 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.98 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 95.92 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 95.68 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.63 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.49 | |
| PLN02153 | 341 | epithiospecifier protein | 95.44 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.41 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.39 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 95.26 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 95.21 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.18 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.06 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.05 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.02 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.92 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.91 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.89 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.87 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.8 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 94.75 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.72 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.71 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.7 | |
| PLN02193 | 470 | nitrile-specifier protein | 94.69 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.54 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 94.45 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.34 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 94.24 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.12 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 93.84 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.57 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 93.51 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 93.41 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 93.41 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.4 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.31 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 93.27 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.14 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 93.14 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 92.85 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.79 | |
| PLN02193 | 470 | nitrile-specifier protein | 92.79 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 92.7 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.69 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 92.6 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 92.5 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 92.26 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 92.25 | |
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 92.24 | |
| PLN02153 | 341 | epithiospecifier protein | 92.15 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 92.05 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 91.97 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 91.91 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.83 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 91.69 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 91.44 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 91.3 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 91.11 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 91.05 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 91.05 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 90.84 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 90.7 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 90.65 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 90.65 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 90.62 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 90.61 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 90.52 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 89.97 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 89.59 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 89.47 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 89.35 | |
| KOG2109 | 788 | consensus WD40 repeat protein [General function pr | 89.25 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 88.94 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 88.87 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 88.8 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 88.54 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 88.38 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 88.22 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 87.91 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 87.65 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 87.55 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 87.5 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 87.47 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 87.22 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 87.05 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 87.04 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-45 Score=375.51 Aligned_cols=311 Identities=26% Similarity=0.443 Sum_probs=275.7
Q ss_pred cceEEEEeCCCceecc---CCCeeeeCCcchhhhhhccccccCCCCCceEEeeecCCCCCcCCCCcccccccCcceeeee
Q 002591 541 KPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 617 (903)
Q Consensus 541 ~~~i~~s~dg~~~~~~---~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~ 617 (903)
.-++.|+|+|.+++++ ..++|||+.+- .+..
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te----------------------------------------------Tp~~ 151 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTE----------------------------------------------TPLF 151 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCC----------------------------------------------Ccce
Confidence 3577889998887763 34477776532 3556
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-EEeccCCCCeEEEEECC-----CCCEEEEEeCCCcEEE
Q 002591 618 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-TNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRV 691 (903)
Q Consensus 618 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~-~~l~~h~~~V~~l~fsp-----dg~~Lasgs~Dg~I~I 691 (903)
+.++|..-|.||+|+|||+.||+|+.||+|++||.++++.+ ..+.+|...|++++|.| ..++||+++.||.|+|
T Consensus 152 t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrI 231 (480)
T KOG0271|consen 152 TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRI 231 (480)
T ss_pred eecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEE
Confidence 78899999999999999999999999999999999987654 67899999999999966 5679999999999999
Q ss_pred EeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc---eeEE-----------Ee
Q 002591 692 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMR-----------FQ 757 (903)
Q Consensus 692 WDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~---~~v~-----------~s 757 (903)
||+.. +.++..+.+|+.+|+|++|-- ..+|++++.|++|++|+...|++.+.++++. +.++ |.
T Consensus 232 Wd~~~-~~~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~ 308 (480)
T KOG0271|consen 232 WDTKL-GTCVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFD 308 (480)
T ss_pred EEccC-ceEEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccc
Confidence 99987 889999999999999999974 4489999999999999999999988887753 3333 33
Q ss_pred cCCC-------------------------EEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002591 758 PHLG-------------------------RYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED 811 (903)
Q Consensus 758 p~~~-------------------------~ll~~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~lasgs~d 811 (903)
+.+. .+++++.|.++.+|+.... +++..+.+|...|+.+.|+||+++||+++-|
T Consensus 309 ~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD 388 (480)
T KOG0271|consen 309 HTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFD 388 (480)
T ss_pred cccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecc
Confidence 3333 4899999999999997655 5888899999999999999999999999999
Q ss_pred -eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCE
Q 002591 812 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 889 (903)
Q Consensus 812 -~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~ 889 (903)
.|++||.+++ +.+..+.+|-..|+.++|+.|.+.|++|+.|.++++||+++.++. .+.+|.+.|.++.|+|||..
T Consensus 389 kSVkLW~g~tG---k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 389 KSVKLWDGRTG---KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQR 465 (480)
T ss_pred cceeeeeCCCc---chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCce
Confidence 9999999998 788899999999999999999999999999999999999999988 88999999999999999999
Q ss_pred EEEEecCCcEEEcC
Q 002591 890 VASASHDKFVKLWK 903 (903)
Q Consensus 890 LaSgs~DG~I~IWd 903 (903)
+++|+.|..++||.
T Consensus 466 V~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 466 VASGGKDKVLRLWR 479 (480)
T ss_pred eecCCCceEEEeec
Confidence 99999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=363.44 Aligned_cols=289 Identities=22% Similarity=0.385 Sum_probs=264.0
Q ss_pred eeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 002591 613 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 692 (903)
Q Consensus 613 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW 692 (903)
.++...+.+|.++|.|+.|+|+|.+||+|+.|.++++||+.+..+.++.++|...|.||+|+|||+.||+|+.||+|++|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceeEEeccCCCceEEEEecCC----CCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCC--CEEEEE
Q 002591 693 DADNPGYSLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL--GRYLAA 766 (903)
Q Consensus 693 Dl~~~~~~~~~~~~h~~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~--~~ll~~ 766 (903)
|.+++....+.+.+|...|++++|.|- ..++|++++.||.|+|||+..+.|+..+.++...+.....| +.++++
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySg 264 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSG 264 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEec
Confidence 999988888999999999999999874 23478899999999999999999999998876655554444 688889
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEc-----------CCCC-------------------------EEEEEeC
Q 002591 767 AAENVVSILDAETQACRLSLQGHTKPIDSVCWD-----------PSGE-------------------------LLASVSE 810 (903)
Q Consensus 767 s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~s-----------pdg~-------------------------~lasgs~ 810 (903)
+.|++|++|+...|++..++++|...|+.++.+ |.++ .+++|++
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999999999999999999999998876 3333 4999999
Q ss_pred C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCC
Q 002591 811 D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG 888 (903)
Q Consensus 811 d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~ 888 (903)
| ++.+|+-... .+++..+.+|...|+.+.|+||+++|++++.|+.|++||.++|+.+ .+.+|-..|+.++|+.|.+
T Consensus 345 d~tlflW~p~~~--kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 345 DFTLFLWNPFKS--KKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred CceEEEeccccc--ccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 9 9999997543 3678888999999999999999999999999999999999999988 8899999999999999999
Q ss_pred EEEEEecCCcEEEcC
Q 002591 889 YVASASHDKFVKLWK 903 (903)
Q Consensus 889 ~LaSgs~DG~I~IWd 903 (903)
+|++||.|.+|++|+
T Consensus 423 LlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWD 437 (480)
T ss_pred EEEEcCCCceEEEEE
Confidence 999999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=353.09 Aligned_cols=287 Identities=27% Similarity=0.441 Sum_probs=266.2
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCC--CCEEEEEeCCCcE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTV 689 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~I 689 (903)
.......--+.+.+|..+.|+.|++.||||+.+|.++||+..+...+.+|.+|...|.++.|+|. +..||+|+.||+|
T Consensus 164 ~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 164 SLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred hhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCce
Confidence 33344444567889999999999999999999999999999999999999999999999999997 5689999999999
Q ss_pred EEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceeEEEecCCCEEEEE
Q 002591 690 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 766 (903)
Q Consensus 690 ~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~~~v~~sp~~~~ll~~ 766 (903)
++|++++ ...+..+.+|...|..++|+|+|.+ |+|++.|.+-++||++++..+...++ ++.+++|.++|..+++|
T Consensus 244 klw~~~~-e~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 244 KLWKLSQ-ETPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred eeeccCC-CcchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchhhHhhcccccccceeEecCCCceeecc
Confidence 9999997 6789999999999999999999885 55999999999999999987655554 57889999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC-
Q 002591 767 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP- 844 (903)
Q Consensus 767 s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp- 844 (903)
+.|..-+|||+++++++..+.+|..+|.+|+|+|+|..||||+.| +++|||++.. .++..+..|.+.|+.+.|+|
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred CccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEeccc
Confidence 999999999999999999999999999999999999999999999 9999999876 56889999999999999998
Q ss_pred CCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 845 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 845 ~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.|.+|++++.|++++||...+..++ .+.+|++.|.++++++|+.+|+|++.|.+|++|.
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 7889999999999999999999988 8899999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=322.22 Aligned_cols=290 Identities=20% Similarity=0.371 Sum_probs=264.1
Q ss_pred cceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 002591 611 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 690 (903)
Q Consensus 611 ~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~ 690 (903)
..++..++|++|.++|+|+.|++|.++|++++.||++.|||.-+...+..++-....|..++|+|.+.++|+|+.|....
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred eeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCC--C---ceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceeEEEec-CCC
Q 002591 691 VWDADNP--G---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQP-HLG 761 (903)
Q Consensus 691 IWDl~~~--~---~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~---~~~v~~sp-~~~ 761 (903)
||++.+. . ...+.+.+|++.+.|+.|..|+ .+ +|++.|.++.+||+++++.+..|.++ +..+.+.| +++
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~i-lT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HI-LTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCC-ce-EecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 9999853 1 3457799999999999999864 34 49999999999999999999999875 56678899 889
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEE
Q 002591 762 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 840 (903)
Q Consensus 762 ~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si 840 (903)
.|++++.|+..++||++.+.++..|.+|+..|++|+|.|+|.-|++|++| +.++||++...+... .........|+++
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~-ys~~~~~~gitSv 279 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV-YSHDSIICGITSV 279 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee-eccCcccCCceeE
Confidence 99999999999999999999999999999999999999999999999999 999999998744322 2233345679999
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 841 VFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 841 ~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+|+..|++|++|..|..+.+||.-.++.+ .+.+|++.|+++..+|||.-|+|||.|.+||||.
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999888887 8899999999999999999999999999999994
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=308.39 Aligned_cols=286 Identities=24% Similarity=0.420 Sum_probs=262.8
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 002591 615 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 693 (903)
Q Consensus 615 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~-t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 693 (903)
++..+.+|++.|+++.|+|+|.+||+|+.|..|.+|++. ..+....+++|.++|..+.|.+|++.|++++.|++|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 445677999999999999999999999999999999954 6677888999999999999999999999999999999999
Q ss_pred CCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceeEEEecCCCEEEEEEcCCe
Q 002591 694 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENV 771 (903)
Q Consensus 694 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~--~~~~~~v~~sp~~~~ll~~s~dg~ 771 (903)
+++ +++++.+++|...|.+++-...|..++++++.|+++++||+++..+++++ +.....+.|.-.+..+++++-|+.
T Consensus 119 ~~t-G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AET-GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccc-ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 998 88999999999999999977778889999999999999999999999988 567888999999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc-ceEEEeecCCC----ceEEEEEeCC
Q 002591 772 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG-ECVHELSCNGN----KFHSCVFHPT 845 (903)
Q Consensus 772 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~-~~i~~~~~~~~----~i~si~~sp~ 845 (903)
|++||++.....+.+.+|.+.|+.+..+++|.++.+-+.| ++++||++..... .|+..+.++.. ....|+|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 9999999999999999999999999999999999999999 9999999876443 45776666533 4578899999
Q ss_pred CCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEE
Q 002591 846 YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 901 (903)
Q Consensus 846 g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~I 901 (903)
++++-+|+.|+.+++||......+ .+.+|.+.|++++|+|...+|.+++.|.+|++
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999987766 89999999999999999999999999999986
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=325.40 Aligned_cols=244 Identities=25% Similarity=0.420 Sum_probs=230.8
Q ss_pred eeeeEeecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 002591 614 KEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 614 ~~~~~l~~H~~~V~~l~fspd--g~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I 691 (903)
..+.+|++|++.|.++.|+|. +..||||+.||+|++|++++...+..+++|...|..++|+|+|++|+|+|.|.+-++
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL 287 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence 566789999999999999997 569999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceeEEEecCCCEEEEEEc
Q 002591 692 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAA 768 (903)
Q Consensus 692 WDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~---~~~v~~sp~~~~ll~~s~ 768 (903)
||+++ +..+....||...|.+|+|+++|. +++||+.|..-+|||+++++++-.+.++ +..+.|+|+|-.+++|+.
T Consensus 288 WD~~t-k~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~ 365 (459)
T KOG0272|consen 288 WDLET-KSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS 365 (459)
T ss_pred ccccc-chhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC
Confidence 99998 667777889999999999999976 7889999999999999999999999875 567899999999999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 002591 769 ENVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 846 (903)
Q Consensus 769 dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp-dg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g 846 (903)
|++++|||++..+.++++.+|...|+.|+|+| .|.+|++++.| +++||..++. .+++.+.+|++.|.++.+++++
T Consensus 366 Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 366 DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDS 442 (459)
T ss_pred CCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCC
Confidence 99999999999999999999999999999999 78899999999 9999999877 7899999999999999999999
Q ss_pred CEEEEEECCCeEEEEE
Q 002591 847 PSLLVIGCYQSLELWN 862 (903)
Q Consensus 847 ~~l~t~s~dg~I~vwd 862 (903)
.+|++++.|++|++|.
T Consensus 443 ~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 443 QAIATSSFDRTIKLWR 458 (459)
T ss_pred ceEEEeccCceeeecc
Confidence 9999999999999995
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=305.32 Aligned_cols=286 Identities=23% Similarity=0.408 Sum_probs=263.3
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I 691 (903)
.|+..+.+.+|.+-|.|+++.|...+|++|+.|++|+|||+.+++.+.++.+|...|..+++++-..||++++.|+.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceeEEEecCCCEEEEEEc
Q 002591 692 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAA 768 (903)
Q Consensus 692 WDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~---~~~v~~sp~~~~ll~~s~ 768 (903)
||++. .+.++.+.||-..|+|++.+|.-+ +|++|+.|.++||||+++...+.++.++ +..+.+.+.+..+++++.
T Consensus 220 wDLe~-nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEY-NKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred Eechh-hhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 99997 788999999999999999999855 6679999999999999999999888765 566778899999999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 002591 769 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 848 (903)
Q Consensus 769 dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~ 848 (903)
|++|++||++.++...++..|...|.+++.+|....||+++.|.|+-|++..+ ..+..+.+|...|.+++...|+ +
T Consensus 298 D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG-V 373 (460)
T ss_pred CceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc-e
Confidence 99999999999999999999999999999999999999999999999999776 5666688888999999988776 6
Q ss_pred EEEEECCCeEEEEECCCCcEEE----E-----ccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 849 LLVIGCYQSLELWNMSENKTMT----L-----TAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 849 l~t~s~dg~I~vwdl~~~~~~~----~-----~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+++|+.+|.|.+||.+++.... . ...+..|.+.+|+..|..|++|..|.+|++|+
T Consensus 374 ~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 8889999999999999986551 1 12456799999999999999999999999996
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=308.26 Aligned_cols=360 Identities=22% Similarity=0.355 Sum_probs=282.1
Q ss_pred CcceEEEEeCCCceec---cCCCeeeeCCcchhh------------------hhhccccccCCCCCceEE-eeecCCCCC
Q 002591 540 SKPLMMFGTDGAGTLT---SPSNQLWDDKDLELR------------------ADMDRLVEDGSLDDNVES-FLSHDDTDP 597 (903)
Q Consensus 540 ~~~~i~~s~dg~~~~~---~~~~~lWd~~~~~~~------------------~~~~~~~~~gs~d~~v~~-~~~~d~~~~ 597 (903)
......|+|.|.|+++ ++.++|||...-+.+ .+-.|+.+.|+--++... |+.+.....
T Consensus 61 ~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~Sv 140 (603)
T KOG0318|consen 61 QVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSV 140 (603)
T ss_pred eeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCcc
Confidence 3456788999998887 456699998762211 112344454444444433 333222111
Q ss_pred cC------------------------CCCcccccccCcceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 002591 598 RD------------------------AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD 653 (903)
Q Consensus 598 ~~------------------------~~~~~~d~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~ 653 (903)
.+ .......+..|.+|+...+++.|..-|.|++|+|||.++|+++.||+|.|||-.
T Consensus 141 Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk 220 (603)
T KOG0318|consen 141 GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK 220 (603)
T ss_pred ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCC
Confidence 11 112344566788899999999999999999999999999999999999999999
Q ss_pred CCceeEEec---cCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCC--------------------------------
Q 002591 654 TLKSKTNLE---EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-------------------------------- 698 (903)
Q Consensus 654 t~~~~~~l~---~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~-------------------------------- 698 (903)
+++.+..+. +|.+.|.+|+|+||+..|++++.|.+++|||+.+..
T Consensus 221 tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G 300 (603)
T KOG0318|consen 221 TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSG 300 (603)
T ss_pred CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCc
Confidence 999999998 899999999999999999999999999999997521
Q ss_pred ----------ceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeE-----------------------
Q 002591 699 ----------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR----------------------- 745 (903)
Q Consensus 699 ----------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~----------------------- 745 (903)
..++.+.+|...|+++..++++.+ |++|+.||.|.-||+.++.+-+
T Consensus 301 ~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~-i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t 379 (603)
T KOG0318|consen 301 TINYLNPSDPSVLKVISGHNKSITALTVSPDGKT-IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT 379 (603)
T ss_pred EEEEecccCCChhheecccccceeEEEEcCCCCE-EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence 113445589999999999999865 5599999999999986543210
Q ss_pred --------Ee------------------------------------------e-----------cCceeEEEecCCCEEE
Q 002591 746 --------VF------------------------------------------K-----------GGTAQMRFQPHLGRYL 764 (903)
Q Consensus 746 --------~~------------------------------------------~-----------~~~~~v~~sp~~~~ll 764 (903)
.+ . -...+++++|++..++
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~va 459 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVA 459 (603)
T ss_pred EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEE
Confidence 00 0 0123466888999999
Q ss_pred EEEcCCeEEEEECCCCeE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEE
Q 002591 765 AAAAENVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 841 (903)
Q Consensus 765 ~~s~dg~I~i~D~~t~~~--~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~ 841 (903)
+|+.|+.|+||.+..... ...+..|..+|++|+|+||+.|||++... .+.+||+.+.+. ....+.-|...|.+++
T Consensus 460 VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~a 537 (603)
T KOG0318|consen 460 VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVA 537 (603)
T ss_pred EecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEE
Confidence 999999999999987643 33456799999999999999999999988 999999988754 4445556889999999
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCcE-E-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 842 FHPTYPSLLVIGCYQSLELWNMSENKT-M-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 842 ~sp~g~~l~t~s~dg~I~vwdl~~~~~-~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
|+|+..++++|+-|-.|.||+++.... + ...+|...|+.+.|- +...|++.+.|..|++|.
T Consensus 538 WsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 538 WSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWN 600 (603)
T ss_pred eCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcceeEEec
Confidence 999999999999999999999976433 3 556899999999995 556789999999999995
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=289.68 Aligned_cols=285 Identities=22% Similarity=0.386 Sum_probs=245.0
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECC-----CCceeEEeccCCCCeEEEEECCCCCEEEEEeC
Q 002591 612 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTD-----TLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 685 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~V~vWd~~-----t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~ 685 (903)
.+....++++|++.|+.++..+.+ ..|++++.|++|.+|++. .|..++.+++|+..|..+..++||.+.++++.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 345667899999999999998874 589999999999999875 46778999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----CceeEEEecC--
Q 002591 686 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPH-- 759 (903)
Q Consensus 686 Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~----~~~~v~~sp~-- 759 (903)
|+++++||+.+ ++..+.|.+|...|.+++|+++... |++|+.|.+|++|++...-....... -+.+++|+|+
T Consensus 84 D~~lrlWDl~~-g~~t~~f~GH~~dVlsva~s~dn~q-ivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 84 DGTLRLWDLAT-GESTRRFVGHTKDVLSVAFSTDNRQ-IVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred cceEEEEEecC-CcEEEEEEecCCceEEEEecCCCce-eecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence 99999999998 6899999999999999999999764 55999999999999986543333332 3789999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceE
Q 002591 760 LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 838 (903)
Q Consensus 760 ~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~ 838 (903)
...|+.++.|++|++||+++.+....+.+|.+.++.++++|||.++++|+.| .+.+||++.+ +++..+. +...|.
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~ 237 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVN 237 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEe
Confidence 5788899999999999999999999999999999999999999999999999 9999999887 4455543 477899
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EE----ccC-----CCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 839 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL----TAH-----EGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 839 si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~----~~h-----~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+++|+|+...|+ ...+..|+|||+.++.++ .+ .+. .-...+++|++||..|++|-.|+.|++|.
T Consensus 238 sl~fspnrywL~-~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 238 SLCFSPNRYWLC-AATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred eEEecCCceeEe-eccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 999999875544 455556999999998876 21 122 33456789999999999999999999994
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=305.78 Aligned_cols=288 Identities=26% Similarity=0.500 Sum_probs=269.2
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I 691 (903)
.+.+...+.+|...|+.+-|+|+-..+++++.|++|++||..+++.+..+++|.+.|.+|+|+..|++||+++.|-.+.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceeEEEecCCCEEEEEEc
Q 002591 692 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAA 768 (903)
Q Consensus 692 WDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~---~~~v~~sp~~~~ll~~s~ 768 (903)
||..+...+++.+.+|...|.+++|-|.++++ ++|+.|.+|+.|++.++-|+.+|.++ +..++..-+|..+++++.
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~i-lS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHI-LSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCee-eecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 99987667889999999999999999998755 59999999999999999999999886 455677788888888899
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC---------------CCEEEEEeCC-eEEEEECCCCCCcceEEEeec
Q 002591 769 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS---------------GELLASVSED-SVRVWTVGSGSEGECVHELSC 832 (903)
Q Consensus 769 dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd---------------g~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~ 832 (903)
|.+|++|-+.++.+...+..|+-+|.|++|.|. +.++++++.| +|++||+.++ .|+.++.+
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~g 332 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVG 332 (406)
T ss_pred CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEec
Confidence 999999999999999999999999999999873 2489999999 9999999988 99999999
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 833 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 833 ~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
|++.|..++|+|.|+||+++..|+++++||+++++++ .+.+|+..|++++|+.+..+++||+-|..+++|.
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999998 7889999999999999999999999999999994
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=284.70 Aligned_cols=266 Identities=21% Similarity=0.436 Sum_probs=239.3
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCc-eeEEeccCCCceEEE
Q 002591 636 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSL 714 (903)
Q Consensus 636 ~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~-~~~~~~~h~~~V~sl 714 (903)
-+||++++|.+|++|...+|.+.+++......|+.+...|+++.||+++. -.||+||+++... ++.+|.+|+..|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 38999999999999999999999999999999999999999999999985 4599999997554 789999999999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC-CCC
Q 002591 715 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HTK 791 (903)
Q Consensus 715 ~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~--~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~-h~~ 791 (903)
.|..+|+ .+++|++||+++|||++...|-+.|. ..++++..+|+-..|+++..+|.|++||+.+..+...+.. ...
T Consensus 90 gF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCe-EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 9999976 56699999999999999988777664 5789999999999999999999999999999877766543 456
Q ss_pred CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC---CcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCC-
Q 002591 792 PIDSVCWDPSGELLASVSED-SVRVWTVGSGS---EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN- 866 (903)
Q Consensus 792 ~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~---~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~- 866 (903)
.|.++...|||.+++.+... ..++|++-+.. ....+..+..|...+..|.++|++++|++++.|.+++||+.++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 89999999999999988877 99999997653 35667788899999999999999999999999999999999987
Q ss_pred cEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 867 KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 867 ~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+.. .+.+|...|++++|+.||.||+||+.|+.+++|+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 222 7789999999999999999999999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=329.02 Aligned_cols=287 Identities=30% Similarity=0.550 Sum_probs=255.9
Q ss_pred eeeeeEeecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEeccCCCCeEEEEECCCCCEEEEEeCCCcE
Q 002591 613 FKEANSVRAS-TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 689 (903)
Q Consensus 613 ~~~~~~l~~H-~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I 689 (903)
+..+..+..| ...|+|+.|+++|++|++++.|+.|++|+..+.+ ....+.+|...|.+++|+|+++++++++.|++|
T Consensus 148 ~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 148 FSLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred ceeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceE
Confidence 3345555554 8899999999999999999999999999998777 778889999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceeEEEecCCCEEEEE
Q 002591 690 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 766 (903)
Q Consensus 690 ~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~~~v~~sp~~~~ll~~ 766 (903)
+|||+...+.+++++.+|...|++++|+|++ .++++|+.|++|+|||++++++++.+.+ .+..++|.+++..++++
T Consensus 228 riwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred EEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc
Confidence 9999966678999999999999999999998 6888999999999999999999998876 46778899999999999
Q ss_pred EcCCeEEEEECCCCe--EEEEecCCCCC--eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc---eE
Q 002591 767 AAENVVSILDAETQA--CRLSLQGHTKP--IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK---FH 838 (903)
Q Consensus 767 s~dg~I~i~D~~t~~--~~~~l~~h~~~--V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~---i~ 838 (903)
+.|+.|+|||+.++. ++..+..+... +++++|+|++.+|++++.| .+++||+..+ .++..+.+|... +.
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIF 383 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEe
Confidence 999999999999999 66777776665 9999999999999999999 9999999877 555566655553 44
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccC-CCCEEEEEEecCCCEEEEEe--cCCcEEEcC
Q 002591 839 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAALAVSTETGYVASAS--HDKFVKLWK 903 (903)
Q Consensus 839 si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h-~~~V~sl~~spdg~~LaSgs--~DG~I~IWd 903 (903)
+..+++.+.++++++.|+.|++||+.++..+ .+.+| ...|..+.|++...++++++ .|+.|++|+
T Consensus 384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 4556789999999999999999999987766 78899 89999999999999999998 799999996
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=312.23 Aligned_cols=275 Identities=22% Similarity=0.446 Sum_probs=246.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeE
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 702 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~ 702 (903)
...|..|.|.|+|+.|++|+..|.+.||+..+......+..|..+|+++.|++++.++++|+.+|.|++|+..- ..+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhH
Confidence 45799999999999999999999999999877777777889999999999999999999999999999999874 3344
Q ss_pred EeccC-CCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceeEEEecCCCEEEEEEcCCeEEEEECC
Q 002591 703 TFMGH-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAE 778 (903)
Q Consensus 703 ~~~~h-~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~~~v~~sp~~~~ll~~s~dg~I~i~D~~ 778 (903)
.+..| ...|++++|+|++. .|++|++||+|+|||....+..+++.+ .+.++.|+|..+.+++++.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 55554 49999999999755 566999999999999999887777766 47889999999999999999999999999
Q ss_pred CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEECCC
Q 002591 779 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQ 856 (903)
Q Consensus 779 t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g-~~l~t~s~dg 856 (903)
++.|+.++.+|+..|..+.|.+++++|++++.| .+++||+++. +.+..+.+|...++++.|+|-. ..|.+|+.||
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 999999999999999999999999999999999 9999999965 6677788899999999999954 5677889999
Q ss_pred eEEEEECCCCcEE--EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 857 SLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 857 ~I~vwdl~~~~~~--~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.|..|.+...+.+ .-.+|+..|++++|+|-|.+|++|+.|.++++|.
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999855555 4458999999999999999999999999999993
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=294.58 Aligned_cols=282 Identities=30% Similarity=0.566 Sum_probs=251.6
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 002591 617 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 696 (903)
Q Consensus 617 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~ 696 (903)
.++++|.+.|++++|++++++|++++.||.|++||+.+++....+..|...|.++.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 46778999999999999999999999999999999998888889999999999999999999999999999999999987
Q ss_pred CCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceeEEEecCCCEEEEEEcCCeEE
Q 002591 697 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVS 773 (903)
Q Consensus 697 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~~~v~~sp~~~~ll~~s~dg~I~ 773 (903)
...+..+..|...|.++.|++++ .++++++.||.|++||+++++....+.. .+..+.|++++..+++++.++.|+
T Consensus 83 -~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 -GECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred -ccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 56777888899999999999984 4676777899999999998887777653 467889999977777777799999
Q ss_pred EEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 002591 774 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 852 (903)
Q Consensus 774 i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~ 852 (903)
+||+++++.+..+..|...|.+++|+++++.+++++.+ .|++||++.+ ..+..+..+...+.++.|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 99999999999999999999999999999888888877 9999999875 5556665677899999999998888877
Q ss_pred ECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 853 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 853 s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+.++.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|++||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77999999999987766 6678999999999999999999999999999997
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=307.00 Aligned_cols=290 Identities=19% Similarity=0.361 Sum_probs=254.2
Q ss_pred ceeeeeEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcE
Q 002591 612 SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 689 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~V~vWd~~t-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I 689 (903)
+-+.+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|++++.|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 5567889999999999999999 889999999999999999874 89999999999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceeEEEecCCCEEEEE
Q 002591 690 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAA 766 (903)
Q Consensus 690 ~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~---~~~~~v~~sp~~~~ll~~ 766 (903)
++||+++ +.++..+. ....++|+.|+|++.+++++|+.|+.|+.||+++++.+..+. +.+..+.|.+.+.+++++
T Consensus 283 KlwDtET-G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 283 KLWDTET-GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeecccc-ceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999 77777776 456789999999998888899999999999999999887775 457789999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC--CCceEEEEE
Q 002591 767 AAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN--GNKFHSCVF 842 (903)
Q Consensus 767 s~dg~I~i~D~~t~~~~~~l~~-h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~--~~~i~si~~ 842 (903)
+.|+.++||+.+....+..+.. +.-...+|..+|+++++++-+.| .|.||.+...-.....+.+.+| .+.-..|.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 9999999999999876654432 33346688999999999999999 9999997655444444445555 345667899
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCC-CEEEEEecCCcEEEcC
Q 002591 843 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 903 (903)
Q Consensus 843 sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg-~~LaSgs~DG~I~IWd 903 (903)
+|||.+|++|..||.+.+||.++.+++ .+.+|+..+..+.|+|.. ..||||+.||.|++|+
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999988 889999999999999954 4799999999999997
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=304.40 Aligned_cols=292 Identities=23% Similarity=0.377 Sum_probs=256.3
Q ss_pred cccCcceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeC
Q 002591 607 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 685 (903)
Q Consensus 607 ~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~D-g~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~ 685 (903)
+..-..+..++.+.-...+|..++|+..|.+||.|+.. |.+.||++.+...+....+|...|+|++++|||.++|+|+.
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e 370 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE 370 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC
Confidence 44444677888888888999999999999999998765 88999999998889999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC----ceeEEEecCCC
Q 002591 686 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLG 761 (903)
Q Consensus 686 Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~----~~~v~~sp~~~ 761 (903)
||+|+|||..+ +.|+.+|..|+..|+.+.|+..+..+ ++.+-||+|+.||+...++.++|..+ ..+++..|.|.
T Consensus 371 DgKVKvWn~~S-gfC~vTFteHts~Vt~v~f~~~g~~l-lssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe 448 (893)
T KOG0291|consen 371 DGKVKVWNTQS-GFCFVTFTEHTSGVTAVQFTARGNVL-LSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE 448 (893)
T ss_pred CCcEEEEeccC-ceEEEEeccCCCceEEEEEEecCCEE-EEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC
Confidence 99999999998 89999999999999999999987754 58999999999999999999998754 46788888888
Q ss_pred EEEEEEcCC-eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEE
Q 002591 762 RYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS 839 (903)
Q Consensus 762 ~ll~~s~dg-~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~s 839 (903)
.+++|+.|. .|.+|++.+|+.+..+.+|+++|.+++|+|++..|++++.| +|++||+-... ..+.++. ....+..
T Consensus 449 lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl~-i~sdvl~ 525 (893)
T KOG0291|consen 449 LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETLE-IRSDVLA 525 (893)
T ss_pred EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeEe-eccceeE
Confidence 888888886 79999999999999999999999999999999999999999 99999996542 1222322 3667899
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCcEE-EE--------------------ccCCCCEEEEEEecCCCEEEEEecCCc
Q 002591 840 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL--------------------TAHEGLIAALAVSTETGYVASASHDKF 898 (903)
Q Consensus 840 i~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~--------------------~~h~~~V~sl~~spdg~~LaSgs~DG~ 898 (903)
++|+|+|+.|++++-||.|.+||+..+..+ .+ .+....++.+++++||.+|++|+....
T Consensus 526 vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~ 605 (893)
T KOG0291|consen 526 VSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNS 605 (893)
T ss_pred EEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCccc
Confidence 999999999999999999999999876543 11 113467899999999999999999999
Q ss_pred EEEcC
Q 002591 899 VKLWK 903 (903)
Q Consensus 899 I~IWd 903 (903)
|+||+
T Consensus 606 iCiY~ 610 (893)
T KOG0291|consen 606 ICIYD 610 (893)
T ss_pred EEEEE
Confidence 99985
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=294.77 Aligned_cols=280 Identities=24% Similarity=0.481 Sum_probs=245.1
Q ss_pred eeEeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCC--Ccee--EEec----------cCCCCeEEEEECCCCCEE
Q 002591 616 ANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDT--LKSK--TNLE----------EHSSLITDVRFSPSMPRL 680 (903)
Q Consensus 616 ~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~V~vWd~~t--~~~~--~~l~----------~h~~~V~~l~fspdg~~L 680 (903)
++.++ |+..|.+++|+|-.. .|++|+.|-+.++|++.. .... ..|+ ..+..|++++|+.+|..|
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 34455 999999999999766 999999999999999863 1111 1111 134679999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc---eeEEEe
Q 002591 681 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQ 757 (903)
Q Consensus 681 asgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~---~~v~~s 757 (903)
|+|+.||.++||+.. +..+.++..|.++|.+|.|+.+|.+++ +++.|+++.+||..++.+...|..+. ..+.|.
T Consensus 251 atG~~~G~~riw~~~--G~l~~tl~~HkgPI~slKWnk~G~yil-S~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKD--GNLISTLGQHKGPIFSLKWNKKGTYIL-SGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred EEeecCcEEEEEecC--chhhhhhhccCCceEEEEEcCCCCEEE-eccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 999999999999987 577899999999999999999988665 99999999999999998887765433 446665
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc
Q 002591 758 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 836 (903)
Q Consensus 758 p~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~ 836 (903)
.+ ..|++++.|+.|+++-+....++.++.+|.++|.++.|+|.|.+|+++++| +++||..... .+++.+..|...
T Consensus 328 ~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hske 403 (524)
T KOG0273|consen 328 SN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSKE 403 (524)
T ss_pred cC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhccc
Confidence 44 678899999999999999999999999999999999999999999999999 9999998765 778888889999
Q ss_pred eEEEEEeCCCC---------EEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 837 FHSCVFHPTYP---------SLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 837 i~si~~sp~g~---------~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
|..+.|+|.+. .+++++.|++|++||+..+.++ .+..|..+|++++|+|+|+|+|+|+.||.|+||+
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 99999999653 5899999999999999999998 7889999999999999999999999999999995
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=271.78 Aligned_cols=281 Identities=22% Similarity=0.422 Sum_probs=239.6
Q ss_pred eeeeeEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC---CceeEEe-ccCCCCeEEEEECCCCCEEEEEeCCC
Q 002591 613 FKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDT---LKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDK 687 (903)
Q Consensus 613 ~~~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~V~vWd~~t---~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg 687 (903)
+..+..+.+|.++|..++|+|- |..||+|+.|+.|+||++.. ..++..+ .+|...|..|+|+|.|++|++++.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567889999999999999998 89999999999999999874 4445444 37999999999999999999999999
Q ss_pred cEEEEeCCC-CCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCC---eeeEEeecC---ceeEEEecCC
Q 002591 688 TVRVWDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG---SCTRVFKGG---TAQMRFQPHL 760 (903)
Q Consensus 688 ~I~IWDl~~-~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~---~~~~~~~~~---~~~v~~sp~~ 760 (903)
++.||.-.. .-+++.++.||...|.|++|+++|. +||+|+.|..|.||.+..+ +|..++..+ +..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 999997653 2367889999999999999999976 6779999999999999754 466777664 5678899999
Q ss_pred CEEEEEEcCCeEEEEECC---CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc
Q 002591 761 GRYLAAAAENVVSILDAE---TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 836 (903)
Q Consensus 761 ~~ll~~s~dg~I~i~D~~---t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~ 836 (903)
..|++++.|++|++|+-. ...++.++.+|...|.+++|++.|..|+++++| +|+||...+. .-..|...
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~ 235 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA 235 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence 999999999999999766 347899999999999999999999999999999 9999996532 11234677
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCc------EE--EEccCCCCEEEEEEecC-CCEEEEEecCCcEEEcC
Q 002591 837 FHSCVFHPTYPSLLVIGCYQSLELWNMSENK------TM--TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 903 (903)
Q Consensus 837 i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~------~~--~~~~h~~~V~sl~~spd-g~~LaSgs~DG~I~IWd 903 (903)
++.+.|. ...|++++.|+.|+||.-...- ++ ....|+..|+++.|.|. ..+|++|++||.|++|.
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 8889998 4579999999999999776431 11 34579999999999994 67899999999999994
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=269.72 Aligned_cols=267 Identities=22% Similarity=0.338 Sum_probs=235.9
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEeccCCCCeEEEEECCCCCEEEEEeCCCcE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 689 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I 689 (903)
+.++.+++.-..+.|+.+.+.||++.||+++.- .|++||+.+++ ++.+|.+|+..|++|.|..+|+.+++|++||++
T Consensus 29 tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTV 107 (311)
T ss_pred cCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceE
Confidence 557888998888999999999999999999854 79999998654 689999999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----cCceeEEEecCCCEEEE
Q 002591 690 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLA 765 (903)
Q Consensus 690 ~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~----~~~~~v~~sp~~~~ll~ 765 (903)
+|||++. -.+-+.|. |..+|+++..+|+-..|| +|+.+|.|++||+.+..|.+.+- ..+..+.+.+++..+++
T Consensus 108 kIWdlR~-~~~qR~~~-~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a 184 (311)
T KOG0315|consen 108 KIWDLRS-LSCQRNYQ-HNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAA 184 (311)
T ss_pred EEEeccC-cccchhcc-CCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEE
Confidence 9999998 44445554 779999999999977776 99999999999999887766542 35678899999999999
Q ss_pred EEcCCeEEEEECCCC------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceE
Q 002591 766 AAAENVVSILDAETQ------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 838 (903)
Q Consensus 766 ~s~dg~I~i~D~~t~------~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~ 838 (903)
+...|.+++|++-+. +++.++..|.+.+..+.++||+++|++++.| +++||++.+. .+.-..+.+|...+.
T Consensus 185 ~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvW 262 (311)
T KOG0315|consen 185 ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVW 262 (311)
T ss_pred ecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEE
Confidence 999999999998754 5667788999999999999999999999999 9999999875 466677888899999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEe
Q 002591 839 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 884 (903)
Q Consensus 839 si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~s 884 (903)
.|+|+.++.||++++.|+.+++||+..++.+ ...+|.....|++..
T Consensus 263 dc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 263 DCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9999999999999999999999999999987 677888887777753
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=274.01 Aligned_cols=249 Identities=18% Similarity=0.294 Sum_probs=216.2
Q ss_pred eeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 002591 613 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 692 (903)
Q Consensus 613 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW 692 (903)
-..++.|++|+..|..+..++||.+.++++.|+++++||+.+++....|.+|...|.+++|++|.+.|++|+.|++|++|
T Consensus 53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceeEEeccC--CCceEEEEecCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceeEEEecCCCEEEEE
Q 002591 693 DADNPGYSLRTFMGH--SASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAA 766 (903)
Q Consensus 693 Dl~~~~~~~~~~~~h--~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~---~~~v~~sp~~~~ll~~ 766 (903)
++.. .+..++..+ .+.|.|++|+|+. +-+|++++.|++|++||+++.+....|.++ ++.+.++|+|..++.|
T Consensus 133 nt~g--~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 133 NTLG--VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred eecc--cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC
Confidence 9985 444444443 7899999999985 557789999999999999999988887654 6778999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEE------eecCCCceEEE
Q 002591 767 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHE------LSCNGNKFHSC 840 (903)
Q Consensus 767 s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~------~~~~~~~i~si 840 (903)
+.||.+.+||++.++.++.+. |...|.+++|+|+...|+.+....|+|||+.+......+.. .........++
T Consensus 211 gkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clsl 289 (315)
T KOG0279|consen 211 GKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSL 289 (315)
T ss_pred CCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEE
Confidence 999999999999999988776 88999999999988888877777999999988733222211 11123346788
Q ss_pred EEeCCCCEEEEEECCCeEEEEECC
Q 002591 841 VFHPTYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 841 ~~sp~g~~l~t~s~dg~I~vwdl~ 864 (903)
+|+++|..|+++-.|+.|++|.+.
T Consensus 290 aws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 290 AWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEcCCCcEEEeeecCCcEEEEEee
Confidence 999999999999999999999875
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=290.75 Aligned_cols=286 Identities=19% Similarity=0.318 Sum_probs=241.2
Q ss_pred cceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceeEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002591 611 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 687 (903)
Q Consensus 611 ~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 687 (903)
++..+...+..|++.|+-+.||++|++||+++.|.+..||++.. .+.++++.+|..+|..|.|+||.++|++|+.|.
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence 36778888999999999999999999999999999999998763 456888999999999999999999999999999
Q ss_pred cEEEEeCCCCCceeEEec-cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----cCceeEEEecCCCE
Q 002591 688 TVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGR 762 (903)
Q Consensus 688 ~I~IWDl~~~~~~~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~----~~~~~v~~sp~~~~ 762 (903)
.+++||+.+ +.+...+. +|...+.+++|.||+..++ +|+.|+.|..||+.... ...++ ..+.++++.++|.+
T Consensus 292 ~~~lwDv~t-gd~~~~y~~~~~~S~~sc~W~pDg~~~V-~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 292 VLSLWDVDT-GDLRHLYPSGLGFSVSSCAWCPDGFRFV-TGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred heeeccCCc-chhhhhcccCcCCCcceeEEccCCceeE-ecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcE
Confidence 999999998 55555444 4568899999999998765 99999999999997543 33333 24678999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc--eEE
Q 002591 763 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHS 839 (903)
Q Consensus 763 ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~--i~s 839 (903)
+++.+.|..|++|+.++...+..+. ...+|++++++.+++++.+.-.+ .|.+||+... ..+..+.+|... +..
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFIIR 444 (519)
T ss_pred EEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEEE
Confidence 9999999999999998876664433 56789999999999998888888 9999999743 555566665432 333
Q ss_pred EEEeC-CCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCC-CEEEEEecCCcEEEcC
Q 002591 840 CVFHP-TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 903 (903)
Q Consensus 840 i~~sp-~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg-~~LaSgs~DG~I~IWd 903 (903)
-+|-- +..++++|+.|+.|+||+..+++++ .+.+|...|+|++|+|.. .+||+||+||+||||.
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 34543 5578999999999999999999998 899999999999999955 5799999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=301.53 Aligned_cols=290 Identities=21% Similarity=0.306 Sum_probs=263.1
Q ss_pred CcceeeeeEeecCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCc
Q 002591 610 GFSFKEANSVRASTSKVICCHFS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 688 (903)
Q Consensus 610 ~~~~~~~~~l~~H~~~V~~l~fs-pdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~ 688 (903)
.-+++..+.+-|..+.|.+++|- |+..+||+++..+.+++|++.+..+. .+.+|++.|.+++...+|.+|++|+.|++
T Consensus 310 ~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~s 388 (775)
T KOG0319|consen 310 EDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKS 388 (775)
T ss_pred ccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCce
Confidence 34677888888999999999985 57789999999999999998877666 88999999999997677889999999999
Q ss_pred EEEEeCCCC---CceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeee------------EEeecCcee
Q 002591 689 VRVWDADNP---GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT------------RVFKGGTAQ 753 (903)
Q Consensus 689 I~IWDl~~~---~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~------------~~~~~~~~~ 753 (903)
|++|.++++ ..++....+|+..|.+++++..+..+|++++.|++|++|++...+.. +.+...+++
T Consensus 389 vilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~ 468 (775)
T KOG0319|consen 389 VILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC 468 (775)
T ss_pred EEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence 999988542 23456778999999999999988999999999999999999873211 112346889
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec
Q 002591 754 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 832 (903)
Q Consensus 754 v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~ 832 (903)
++++|++..+++|+.|.+.+||+++......++.+|+..|.|+.|++...++++++.| +|+||.+.+. .|+.++.+
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eG 545 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEG 545 (775)
T ss_pred eEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecC
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999887 89999999
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 833 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 833 ~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
|...|..+.|-.++..|++++.||-|++|+++++++. ++.+|.+.|++++.++...+++||+.||.|.+|+
T Consensus 546 H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 546 HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 9999999999999999999999999999999999998 8999999999999999999999999999999995
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=285.64 Aligned_cols=274 Identities=23% Similarity=0.379 Sum_probs=251.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeE
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 702 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~ 702 (903)
+..|++++|+.+|.+||+|+.||.++||+. ++..+.++..|.++|.+|.|+.+|.||++++.|+++.|||..+ +....
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~-g~~~q 312 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-GTVKQ 312 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC-ceEEE
Confidence 467999999999999999999999999995 5788999999999999999999999999999999999999987 77778
Q ss_pred EeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceeEEEecCCCEEEEEEcCCeEEEEECCC
Q 002591 703 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAET 779 (903)
Q Consensus 703 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t 779 (903)
.+.-|..+-.++.|-.+. -|++++.|+.|+++.+.....+.++.+ .+..+.|.|.+..|++++.|++++||....
T Consensus 313 ~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred eeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 888888887889997653 467999999999999998888887765 577899999999999999999999999999
Q ss_pred CeEEEEecCCCCCeEEEEEcCCC---------CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 002591 780 QACRLSLQGHTKPIDSVCWDPSG---------ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 849 (903)
Q Consensus 780 ~~~~~~l~~h~~~V~sl~~spdg---------~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l 849 (903)
..+...+.+|...|..+.|+|+| ..+++++.| +|++||+..+ .+++.+..|..+|++++|+|+|+++
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEE
Confidence 99999999999999999999964 468888888 9999999887 8999999999999999999999999
Q ss_pred EEEECCCeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 850 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 850 ~t~s~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
++|+.||.|.+|+..+++++......+.|..++|+.+|.+|+.+-.|+.+++-|
T Consensus 468 AsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 468 ASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 999999999999999999998888888899999999999999999999988753
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=304.87 Aligned_cols=272 Identities=24% Similarity=0.423 Sum_probs=238.0
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------------------------------ceeEEeccCC
Q 002591 617 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-------------------------------KSKTNLEEHS 665 (903)
Q Consensus 617 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~-------------------------------~~~~~l~~h~ 665 (903)
.++..-...|+|+.|++|+++||.|..|..|++|.+... ...+++.+|.
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 344445567999999999999999999999999987621 1224467899
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeE
Q 002591 666 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 745 (903)
Q Consensus 666 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~ 745 (903)
++|..+.|+|+.++|++++.|++||+|.+.+ ..++..+.||..+|+++.|+|.| ++|||++.|++-++|.......++
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t-~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLR 529 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeeccc-ceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchh
Confidence 9999999999999999999999999999998 77889999999999999999985 577899999999999999988888
Q ss_pred Eeec---CceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002591 746 VFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 821 (903)
Q Consensus 746 ~~~~---~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~ 821 (903)
.|.+ .+.|+.|+|+..++++|+.|.+|++||+.+|..++.|.||.++|++++|+|+|++|++|+.| .|+|||+.++
T Consensus 530 ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 8876 46789999999999999999999999999999999999999999999999999999999999 9999999987
Q ss_pred CCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-------------------------EEccCCC
Q 002591 822 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-------------------------TLTAHEG 876 (903)
Q Consensus 822 ~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-------------------------~~~~h~~ 876 (903)
..+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+..-... .+.....
T Consensus 610 ---~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~t 686 (707)
T KOG0263|consen 610 ---SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNT 686 (707)
T ss_pred ---cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCc
Confidence 677788889999999999999999999999999999998542211 2333455
Q ss_pred CEEEEEEecCCCEEEEE
Q 002591 877 LIAALAVSTETGYVASA 893 (903)
Q Consensus 877 ~V~sl~~spdg~~LaSg 893 (903)
+|.++.|..-+-.|++|
T Consensus 687 pv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 687 PVVGLHFTRRNLLLAVG 703 (707)
T ss_pred eEEEEEEeccceeEEec
Confidence 78888887766555554
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-31 Score=272.98 Aligned_cols=298 Identities=19% Similarity=0.262 Sum_probs=260.0
Q ss_pred CCcCCCCcccccccCcceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECC
Q 002591 596 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 675 (903)
Q Consensus 596 ~~~~~~~~~~d~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fsp 675 (903)
.+.|...-+|++..+ .....+.+|.+.|+|+.|+.||.+||||+.+|.|+||+..++.....+......|.-++|+|
T Consensus 82 GGgDD~AflW~~~~g---e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp 158 (399)
T KOG0296|consen 82 GGGDDLAFLWDISTG---EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP 158 (399)
T ss_pred cCCCceEEEEEccCC---cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc
Confidence 445555667777766 37788899999999999999999999999999999999999999999987778899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----Cc
Q 002591 676 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GT 751 (903)
Q Consensus 676 dg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~----~~ 751 (903)
.+..|++|+.||.|.+|.+.+ ....+.+.||..++++=+|.|+|++++ ++..||+|++||..++..+..+.. ..
T Consensus 159 ~a~illAG~~DGsvWmw~ip~-~~~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~ 236 (399)
T KOG0296|consen 159 RAHILLAGSTDGSVWMWQIPS-QALCKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKITQAEGLEL 236 (399)
T ss_pred cccEEEeecCCCcEEEEECCC-cceeeEecCCCCCcccccccCCCceEE-EEecCceEEEEecCCCceeEEecccccCcC
Confidence 999999999999999999997 467889999999999999999988665 999999999999999998877762 35
Q ss_pred eeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec--------CCCCCeEEEEEcC---CCCEEEEEeCC-eEEEEECC
Q 002591 752 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--------GHTKPIDSVCWDP---SGELLASVSED-SVRVWTVG 819 (903)
Q Consensus 752 ~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~--------~h~~~V~sl~~sp---dg~~lasgs~d-~I~iwdl~ 819 (903)
.++.+...+..++.+..++.+++....+++.+.... .+...+.||.+.| .=.+.|+|+-| +|.|||+.
T Consensus 237 ~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a 316 (399)
T KOG0296|consen 237 PCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLA 316 (399)
T ss_pred CccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecc
Confidence 667788888889999999999999999999888776 3444555555544 55688999999 99999997
Q ss_pred CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCc
Q 002591 820 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKF 898 (903)
Q Consensus 820 s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~ 898 (903)
.. .++..-.|...|..+.|-+ ..+|++++.+|.|+.||.++|.++ .+.+|...|.+++++|+.++++|+|.|++
T Consensus 317 ~~----~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 317 AS----TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred cc----hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence 64 3444555688899999998 789999999999999999999988 89999999999999999999999999999
Q ss_pred EEEcC
Q 002591 899 VKLWK 903 (903)
Q Consensus 899 I~IWd 903 (903)
.+||+
T Consensus 392 a~VF~ 396 (399)
T KOG0296|consen 392 ALVFE 396 (399)
T ss_pred EEEEe
Confidence 99985
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=320.65 Aligned_cols=282 Identities=18% Similarity=0.305 Sum_probs=238.2
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----c----eeEEeccCCCCeEEEEECCC-CCEEEEEeCCCcE
Q 002591 619 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----K----SKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTV 689 (903)
Q Consensus 619 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~----~----~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~I 689 (903)
+..|.+.|++++|+++|++||+|+.|++|+|||+.+. . ....+. +...|.+++|++. +.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997531 1 122333 3567999999874 7799999999999
Q ss_pred EEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec--CceeEEEe-cCCCEEEEE
Q 002591 690 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQ-PHLGRYLAA 766 (903)
Q Consensus 690 ~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~--~~~~v~~s-p~~~~ll~~ 766 (903)
+|||+.+ +..+..+.+|...|++++|+|....+|++|+.||+|++||++++.++..+.. .+.++.|. +++..++++
T Consensus 558 ~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVAR-SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCC-CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 9999987 6778889999999999999985556788999999999999999988877654 45667775 457889999
Q ss_pred EcCCeEEEEECCCCe-EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC---CcceEEEeecCCCceEEEE
Q 002591 767 AAENVVSILDAETQA-CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS---EGECVHELSCNGNKFHSCV 841 (903)
Q Consensus 767 s~dg~I~i~D~~t~~-~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~---~~~~i~~~~~~~~~i~si~ 841 (903)
+.|+.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.| +|+|||++... ...++..+.+|...+..++
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999999875 567788999999999997 67889999988 99999997542 2356778888999999999
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCcEE--------------EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 842 FHPTYPSLLVIGCYQSLELWNMSENKTM--------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 842 ~sp~g~~l~t~s~dg~I~vwdl~~~~~~--------------~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
|++++.+|++|+.|+.|++|+......+ ....|...|.+++|++++.+|++|+.||.|+||+
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999999999998655322 1133556799999999999999999999999996
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=290.92 Aligned_cols=282 Identities=21% Similarity=0.386 Sum_probs=259.6
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 002591 615 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 694 (903)
Q Consensus 615 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 694 (903)
..+++..|+++|.||.|+|...+++++-+.|.|.|||.++-..++.+.....+|.+..|-.-.+++++|+.|..||||+.
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 34556679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCC-eeeEEeecC---ceeEEEecCC-CEEEEEEcC
Q 002591 695 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGG---TAQMRFQPHL-GRYLAAAAE 769 (903)
Q Consensus 695 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~-~~~~~~~~~---~~~v~~sp~~-~~ll~~s~d 769 (903)
.+ ...+..|..|.+.|.||+.||..+++| ++++|-+|++||.+.+ .|..+|+++ +.+++|.|.+ +.+++++-|
T Consensus 85 nt-~ekV~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 85 NT-GEKVKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred cc-ceeeEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence 98 788999999999999999999988666 9999999999999875 688889886 5678999977 678889999
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC--CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 002591 770 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSG--ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 846 (903)
Q Consensus 770 g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg--~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g 846 (903)
++|++|.+....+..++.+|...|+||+|-+-| .+|++|++| +|+|||..+. .|+.++.+|...|..+.|+|.-
T Consensus 163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPEL 239 (794)
T ss_pred ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCC
Confidence 999999999999999999999999999999855 499999999 9999999876 8999999999999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEE
Q 002591 847 PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 901 (903)
Q Consensus 847 ~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~I 901 (903)
..|++|+.||+|+||+..+-+.. ++.-....|+|++-.+.++.++.|.+.|.|.|
T Consensus 240 piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999999988876 66667789999999999999999999988764
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=300.90 Aligned_cols=263 Identities=28% Similarity=0.466 Sum_probs=218.9
Q ss_pred ceEEEEeCCCceec---cCCCeeeeCCcchhhhhhccccccCCCCCceEEeeecCCCCCcCCCCcccccccCcceeeeeE
Q 002591 542 PLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 618 (903)
Q Consensus 542 ~~i~~s~dg~~~~~---~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~~ 618 (903)
.+.-|++|+..++. +..+++|.+...++...-+. .++..-++...|......|.. .-...++
T Consensus 382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~------------~~l~~~d~~sad~~~~~~D~~---~~~~~~~ 446 (707)
T KOG0263|consen 382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDA------------SDLSNIDTESADVDVDMLDDD---SSGTSRT 446 (707)
T ss_pred eeEeecCCcchhhccccccEEEEEecchhhhccccch------------hhhccccccccchhhhhcccc---CCceeEE
Confidence 35556677664443 66778999885433221100 011111111122222222222 3334556
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 002591 619 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 698 (903)
Q Consensus 619 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~ 698 (903)
+.+|.++|+.+.|+|+.++|++++.|++||+|.+.+..++..+++|..+|+++.|+|.|-||||++.|++.++|..+. .
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~ 525 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-N 525 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred ceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceeEEEecCCCEEEEEEcCCeEEEE
Q 002591 699 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSIL 775 (903)
Q Consensus 699 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~---~~~v~~sp~~~~ll~~s~dg~I~i~ 775 (903)
.+++.+.+|-+.|.|+.|||+.. ++++|+.|.+||+||+.+|.+++.|.++ +.+++|+|.|.++++|+.|+.|.||
T Consensus 526 ~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iW 604 (707)
T KOG0263|consen 526 KPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIW 604 (707)
T ss_pred CchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEE
Confidence 89999999999999999999976 5669999999999999999999999764 6789999999999999999999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002591 776 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 821 (903)
Q Consensus 776 D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~ 821 (903)
|+.+++.+..+.+|++.|.++.|+.+|.+||+++.| +|++||+...
T Consensus 605 Dl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 605 DLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999999999999999999 9999999754
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=281.54 Aligned_cols=264 Identities=22% Similarity=0.466 Sum_probs=231.3
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCce
Q 002591 621 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 700 (903)
Q Consensus 621 ~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~ 700 (903)
.....|+|+.+..+ .+++|..|.+|+|||..+..+++.+.+|++.|.|+.|. .+.|++|+.|.+|+|||+.+ +++
T Consensus 195 e~skgVYClQYDD~--kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t-ge~ 269 (499)
T KOG0281|consen 195 ENSKGVYCLQYDDE--KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT-GEP 269 (499)
T ss_pred ccCCceEEEEecch--hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC-Cch
Confidence 35678999998644 79999999999999999999999999999999999986 45999999999999999998 889
Q ss_pred eEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe---eeEEeecC---ceeEEEecCCCEEEEEEcCCeEEE
Q 002591 701 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSI 774 (903)
Q Consensus 701 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~---~~~~~~~~---~~~v~~sp~~~~ll~~s~dg~I~i 774 (903)
+.++.+|...|..+.|+. .++++|+.|.+|.+||+.... +.+++.++ ++.+.|+ .+++++++.|.+|++
T Consensus 270 l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV 344 (499)
T ss_pred hhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEE
Confidence 999999999999999983 377799999999999998754 33444444 4444454 458999999999999
Q ss_pred EECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 002591 775 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 853 (903)
Q Consensus 775 ~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s 853 (903)
|++.+++++.++.+|...|.|+.+. ++++++|+.| +|++||+..+ .|+..+.+|+.-|.++.| +.+.|++|+
T Consensus 345 W~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRF--d~krIVSGa 417 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNKRIVSGA 417 (499)
T ss_pred Eeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheee--cCceeeecc
Confidence 9999999999999999999988775 8999999999 9999999887 899999999999999999 456899999
Q ss_pred CCCeEEEEECCCCcE----------EEEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 854 CYQSLELWNMSENKT----------MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 854 ~dg~I~vwdl~~~~~----------~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.||+|+|||+..+.- ..+..|.+.|..+.| |...|+++++|.+|.|||
T Consensus 418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred ccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 999999999976531 256679999999999 456799999999999997
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=294.97 Aligned_cols=349 Identities=21% Similarity=0.345 Sum_probs=264.3
Q ss_pred EEEEeCCCceec--cCCCeeeeCCcchhhhhhccccccCCCCCceEEe-eecCCC----CCcCCCCcccccccCcceeee
Q 002591 544 MMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDT----DPRDAGGRGMDVSQGFSFKEA 616 (903)
Q Consensus 544 i~~s~dg~~~~~--~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~-~~~d~~----~~~~~~~~~~d~~~~~~~~~~ 616 (903)
+.|+++|..++. .+.+.+-|+.++... +. +.... .++.+..+ +.+|+. ..+....++|.+..+ +.+
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~--l~-s~~~e-d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tg---k~i 97 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIA--LP-SGSNE-DEDEITALALTPDEEVLVTASRSQLLRVWSLPTG---KLI 97 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCcee--cc-cCCcc-chhhhheeeecCCccEEEEeeccceEEEEEcccc---hHh
Confidence 788889887666 444566777777552 11 11111 11112222 222221 122334456666654 777
Q ss_pred eEeec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCC--EEEEEeCCCcEEEEe
Q 002591 617 NSVRA-STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWD 693 (903)
Q Consensus 617 ~~l~~-H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~I~IWD 693 (903)
+.++. |+.+|.-++|+|.|.+|++|+.|+.|+|||+..+.+...|++|.+.|.++.|+|+-. .|++|..|+.|++||
T Consensus 98 rswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwn 177 (775)
T KOG0319|consen 98 RSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWN 177 (775)
T ss_pred HhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEE
Confidence 77887 999999999999999999999999999999999999999999999999999999865 589999999999999
Q ss_pred CCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--------------------------
Q 002591 694 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------------------------- 747 (903)
Q Consensus 694 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~-------------------------- 747 (903)
+.+...++.++..|.+.|++++|.+++..++ +++.|..|.|||+...++.++.
T Consensus 178 l~~~~tcl~~~~~H~S~vtsL~~~~d~~~~l-s~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta 256 (775)
T KOG0319|consen 178 LNDKRTCLHTMILHKSAVTSLAFSEDSLELL-SVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITA 256 (775)
T ss_pred cccCchHHHHHHhhhhheeeeeeccCCceEE-EeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEe
Confidence 9976667889999999999999999977666 8888999999997543211110
Q ss_pred ---------e-----------c----------------------------------------------CceeEE------
Q 002591 748 ---------K-----------G----------------------------------------------GTAQMR------ 755 (903)
Q Consensus 748 ---------~-----------~----------------------------------------------~~~~v~------ 755 (903)
. . .+..++
T Consensus 257 G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~ 336 (775)
T KOG0319|consen 257 GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEE 336 (775)
T ss_pred cCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCcc
Confidence 0 0 000000
Q ss_pred ----------------------------------E--ecCCCEEEEEEcCCeEEEEECCCCe------------------
Q 002591 756 ----------------------------------F--QPHLGRYLAAAAENVVSILDAETQA------------------ 781 (903)
Q Consensus 756 ----------------------------------~--sp~~~~ll~~s~dg~I~i~D~~t~~------------------ 781 (903)
. ...+-.+++++.|.++++|.++++.
T Consensus 337 ~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGA 416 (775)
T ss_pred ceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccce
Confidence 0 0122255555666666666442110
Q ss_pred ----------------------------------EEE----EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002591 782 ----------------------------------CRL----SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 822 (903)
Q Consensus 782 ----------------------------------~~~----~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~ 822 (903)
.+. +...|...|+|++++|+.++|+||+.| +.+||++..
T Consensus 417 va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-- 494 (775)
T KOG0319|consen 417 VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-- 494 (775)
T ss_pred eeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC--
Confidence 000 123577888999999999999999999 899999974
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEE
Q 002591 823 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 901 (903)
Q Consensus 823 ~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~I 901 (903)
......+.+|...|.++.|++....+++++.|++|+||.+.+..++ ++.+|...|..+.|-.+++.|+||+.||.|+|
T Consensus 495 -~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKl 573 (775)
T KOG0319|consen 495 -LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKL 573 (775)
T ss_pred -ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEE
Confidence 3788899999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred cC
Q 002591 902 WK 903 (903)
Q Consensus 902 Wd 903 (903)
|+
T Consensus 574 Wn 575 (775)
T KOG0319|consen 574 WN 575 (775)
T ss_pred Ee
Confidence 96
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-30 Score=260.16 Aligned_cols=243 Identities=24% Similarity=0.442 Sum_probs=218.5
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------ceeEEeccCCCCeEEEEECCCCCEEEEEeCCCc
Q 002591 615 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 688 (903)
Q Consensus 615 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~ 688 (903)
.+..+.-...-|..++|+|.|+++|.|+-|+...||++.+. +..+.+.+|++.+.|+.|-.| ..|+|++.|.+
T Consensus 89 K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~T 167 (343)
T KOG0286|consen 89 KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMT 167 (343)
T ss_pred ceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCce
Confidence 34445556778999999999999999999999999999854 456778999999999999984 58999999999
Q ss_pred EEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceeEEEecCCCEEEE
Q 002591 689 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLA 765 (903)
Q Consensus 689 I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~---~~~v~~sp~~~~ll~ 765 (903)
+.+||+++ +..+..|.+|.+.|.+|++.|...+.+++|+-|+..++||++.+.++..|.++ ++.++|.|+|.-|++
T Consensus 168 CalWDie~-g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat 246 (343)
T KOG0286|consen 168 CALWDIET-GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT 246 (343)
T ss_pred EEEEEccc-ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeee
Confidence 99999998 88899999999999999999955556779999999999999999999999864 778999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEE
Q 002591 766 AAAENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 842 (903)
Q Consensus 766 ~s~dg~I~i~D~~t~~~~~~l~~--h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~ 842 (903)
++.|+++++||++....+..+.. ...+|++++|+-.|++|++|..| ++.+||.-.+ +.+..+.+|++.|.++..
T Consensus 247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~ 323 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGV 323 (343)
T ss_pred cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEE
Confidence 99999999999999888777763 34579999999999999999888 9999999766 677888899999999999
Q ss_pred eCCCCEEEEEECCCeEEEEE
Q 002591 843 HPTYPSLLVIGCYQSLELWN 862 (903)
Q Consensus 843 sp~g~~l~t~s~dg~I~vwd 862 (903)
+|||..+++|+.|..|+||.
T Consensus 324 s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 324 SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCCCcEEEecchhHheeecC
Confidence 99999999999999999994
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-29 Score=282.71 Aligned_cols=278 Identities=20% Similarity=0.315 Sum_probs=252.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeC-CCcEEEEeCCCCCc
Q 002591 621 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGY 699 (903)
Q Consensus 621 ~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~IWDl~~~~~ 699 (903)
.....|+|++|++..+.||+|-..|.+.+|++....+++.+.-....|..+.|+..|.+||.||. -|.+.||+..+ ..
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs-Es 341 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS-ES 341 (893)
T ss_pred ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec-cc
Confidence 34488999999999999999999999999999999999999998899999999999999999986 48999999998 44
Q ss_pred eeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceeEEEecCCCEEEEEEcCCeEEEEE
Q 002591 700 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILD 776 (903)
Q Consensus 700 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~---~~~v~~sp~~~~ll~~s~dg~I~i~D 776 (903)
-+....+|...|++++++|||. ++++|++||.|+|||..++-|..+|..+ ++.+.|+..++.+++++-||+|+.||
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred eeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 4666778999999999999977 6679999999999999999999999764 56788999999999999999999999
Q ss_pred CCCCeEEEEecCC-CCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 002591 777 AETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 853 (903)
Q Consensus 777 ~~t~~~~~~l~~h-~~~V~sl~~spdg~~lasgs~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s 853 (903)
+...+..+++... .....|++.+|.|.++++|+.| .|.||++.+| +.+..+.+|+++|.+++|+|.+..|++++
T Consensus 421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG---qllDiLsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG---QLLDILSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---eeeehhcCCCCcceeeEEccccCeEEecc
Confidence 9999999998863 3457889999999999999999 8999999998 78889999999999999999999999999
Q ss_pred CCCeEEEEECCCC-cEEEEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 854 CYQSLELWNMSEN-KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 854 ~dg~I~vwdl~~~-~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.|++|++||+-.. ..+....+...|.+++|+|+|+-||++.-||.|.|||
T Consensus 498 WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 498 WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 9999999998654 3445556778899999999999999999999999997
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=255.31 Aligned_cols=281 Identities=19% Similarity=0.326 Sum_probs=240.4
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I 691 (903)
+-+....+..|.++|.++.|+-||+|.++++.|++|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence 33566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe--eeEEeec---CceeEEEecCCCEEEEE
Q 002591 692 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKG---GTAQMRFQPHLGRYLAA 766 (903)
Q Consensus 692 WDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~--~~~~~~~---~~~~v~~sp~~~~ll~~ 766 (903)
||+.+ ++.++.|.+|...|..+.|+.+. .++++|+.|..|++||.++.. .+.++.. .+.++ .-.+..|+++
T Consensus 86 wDV~T-Gkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si--~v~~heIvaG 161 (307)
T KOG0316|consen 86 WDVNT-GKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI--DVAEHEIVAG 161 (307)
T ss_pred EEccc-CeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE--EecccEEEee
Confidence 99998 88999999999999999999875 477899999999999998754 4555443 34444 4455789999
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc--eEEEEEe
Q 002591 767 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFH 843 (903)
Q Consensus 767 s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~--i~si~~s 843 (903)
+.||+++.||++.|.....+.+ .+|+|++|+++++.+.+++.| +|++.|-.++ +.+..+++|.+. -..|++.
T Consensus 162 S~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~ 236 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLN 236 (307)
T ss_pred ccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeec
Confidence 9999999999999988766554 689999999999988888888 9999999888 666666666654 3456777
Q ss_pred CCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCC-EEEEEEecCCCEEEEEecCCcEEEc
Q 002591 844 PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL-IAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 844 p~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~-V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
....+++.|+.||.|++||+.....+ .+..+... |.+++++|....|+++.. +.+.+|
T Consensus 237 qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred ccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence 78889999999999999999999888 56666666 899999998887888754 445555
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=288.95 Aligned_cols=279 Identities=23% Similarity=0.401 Sum_probs=254.9
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 002591 617 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 696 (903)
Q Consensus 617 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~ 696 (903)
..+.+|...|.+++||.+...+++|+ .+.|+||+.++.++++++... .+.|..|.|.++++++|...|.+.|||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 35678999999999999988888775 568999999999999999765 899999999999999999999999999998
Q ss_pred CCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCC--------e-------eeEEeecCceeEEEecCCC
Q 002591 697 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--------S-------CTRVFKGGTAQMRFQPHLG 761 (903)
Q Consensus 697 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~--------~-------~~~~~~~~~~~v~~sp~~~ 761 (903)
...+.++..|.+.|++++.+|++..++ +++.|.+|++||..-. + ..-.+...+.++.++|++.
T Consensus 444 -~~l~Eti~AHdgaIWsi~~~pD~~g~v-T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 444 -ASLVETIRAHDGAIWSISLSPDNKGFV-TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred -hhhhhhhhccccceeeeeecCCCCceE-EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 677888889999999999999988766 9999999999997521 1 1122345788999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEE
Q 002591 762 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 840 (903)
Q Consensus 762 ~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si 840 (903)
+++++--|++|+||-+++.+....+.||.-||.|+.++||+++++||+.| +|+||-+.-| .|.+.+..|...|.++
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSV 598 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEE
Confidence 99999999999999999999999999999999999999999999999999 9999999776 8899999999999999
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 841 VFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 841 ~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.|.|....+++++.|+.|+-||-...+.+ .+.+|...|+|++.+|+|.+++++|+|.+|++|.
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999999888877 8999999999999999999999999999999994
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-32 Score=282.52 Aligned_cols=272 Identities=24% Similarity=0.415 Sum_probs=231.5
Q ss_pred EEeeecCCCCCcCCCCcccccccCcceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc-CC
Q 002591 587 ESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HS 665 (903)
Q Consensus 587 ~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~-h~ 665 (903)
..|..++...........+.++++..|.....+.+|.++|+++.|+++|.++++|+.+|.|++|+..- ..++.+.. |.
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~ 180 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHA 180 (464)
T ss_pred EEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhh
Confidence 33444333444444555667777778888889999999999999999999999999999999999764 34444544 55
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeE
Q 002591 666 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 745 (903)
Q Consensus 666 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~ 745 (903)
..|++++|+|+...|++++.||+|+|||... .+.-+.+.+|.-.|.+++|+|... +|++++.|..|++||.+++.|+.
T Consensus 181 eaIRdlafSpnDskF~t~SdDg~ikiWdf~~-~kee~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~ 258 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM-PKEERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLA 258 (464)
T ss_pred hhhheeccCCCCceeEEecCCCeEEEEeccC-CchhheeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcchhh
Confidence 9999999999999999999999999999987 556677899999999999999855 78899999999999999999988
Q ss_pred Eeec---CceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCC
Q 002591 746 VFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGS 820 (903)
Q Consensus 746 ~~~~---~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg-~~lasgs~d-~I~iwdl~s 820 (903)
++.. -+..+.|.+++++|++++.|..+++||+++.+.+.++++|+..|+++.|+|-. .+|++|+.| .|..|.+..
T Consensus 259 tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~ 338 (464)
T KOG0284|consen 259 TLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL 338 (464)
T ss_pred hhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccc
Confidence 7654 46678899999999999999999999999999999999999999999999954 488888888 999999873
Q ss_pred CCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEEC
Q 002591 821 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 863 (903)
Q Consensus 821 ~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl 863 (903)
.+ .....-..|+..|.+++|+|-|..|++|+.|.++++|.-
T Consensus 339 ~~--p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 339 EE--PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cc--cccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 32 222333567899999999999999999999999999975
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=269.85 Aligned_cols=282 Identities=21% Similarity=0.392 Sum_probs=245.4
Q ss_pred eeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeEEeccCCCCeEEEEECCCCCEEEEEeCC----C
Q 002591 614 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSFD----K 687 (903)
Q Consensus 614 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g 687 (903)
..+..+.+|...++-..|+|.|-|+|+|...|+|||||... .-++.++....++|.+|.|+.++++|++.++. |
T Consensus 50 ~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 50 ASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG 129 (603)
T ss_pred cceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence 34667788999999999999999999999999999999763 33455677889999999999999999887752 4
Q ss_pred cEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceeEEEecCCCEEE
Q 002591 688 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 764 (903)
Q Consensus 688 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~~~v~~sp~~~~ll 764 (903)
.+.+||. +..+-.+.+|...|.+++|-|..+.-+++|++|++|.+|+=.-.+...++.. -+.+++|+|++.+|+
T Consensus 130 ~~F~~DS---G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fa 206 (603)
T KOG0318|consen 130 HVFLWDS---GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFA 206 (603)
T ss_pred EEEEecC---CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEE
Confidence 4666765 4568889999999999999999999999999999999998666565555443 478999999999999
Q ss_pred EEEcCCeEEEEECCCCeEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC---Cce
Q 002591 765 AAAAENVVSILDAETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---NKF 837 (903)
Q Consensus 765 ~~s~dg~I~i~D~~t~~~~~~l~---~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~---~~i 837 (903)
+++.||+|.|||-.+++.+..+. +|.+.|.+++|+||+..|++++.| +++|||+.+. .++.++.... ...
T Consensus 207 t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~---slv~t~~~~~~v~dqq 283 (603)
T KOG0318|consen 207 TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN---SLVSTWPMGSTVEDQQ 283 (603)
T ss_pred EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc---ceEEEeecCCchhceE
Confidence 99999999999999999999998 799999999999999999999999 9999999887 5666554432 345
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 838 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 838 ~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
..|.|- ...|++.+.+|.|.+++....... .+.+|...|+++..++++++|++|+.||.|.-|+
T Consensus 284 vG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 284 VGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred EEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 667776 567999999999999999998866 8889999999999999999999999999999996
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=268.94 Aligned_cols=277 Identities=25% Similarity=0.433 Sum_probs=245.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec--------cCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 002591 621 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--------EHSSLITDVRFSPSMPRLATSSFDKTVRVW 692 (903)
Q Consensus 621 ~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~--------~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW 692 (903)
+...-+.|..|+|||.+|++|+.||-|.|||..+|+..+.++ -+..+|.|++|+.|...|++|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 345668899999999999999999999999999998877654 478999999999999999999999999999
Q ss_pred eCCCCCceeEEec-cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceeEEEecCCCEEEEEEc
Q 002591 693 DADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAA 768 (903)
Q Consensus 693 Dl~~~~~~~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~---~~~v~~sp~~~~ll~~s~ 768 (903)
.+.+ +.|++.|. .|+..|+|+.|+.|+..++ +++.|.+|+|.-+++|++++.|+++ ++...|.++|..++++++
T Consensus 291 ri~t-G~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 291 RIET-GQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEec-chHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 9998 78888887 8999999999999988776 9999999999999999999999886 456789999999999999
Q ss_pred CCeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEee---cCCCceEEEE
Q 002591 769 ENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELS---CNGNKFHSCV 841 (903)
Q Consensus 769 dg~I~i~D~~t~~~~~~l~~--h~~~V~sl~~spdg~-~lasgs~d-~I~iwdl~s~~~~~~i~~~~---~~~~~i~si~ 841 (903)
||+|++|+.++.+|+.+++. ...+|.++..-|... .+++|... +|+|.++.. ..++.+. ..++.+.+++
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEE
Confidence 99999999999999998875 456788888888554 66666666 999998853 3444443 3456788999
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 842 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 842 ~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.+|.|.++++.+.|+.++.|.+.+|++. ++..|+..|..++-+|..+.|++-++||.+++|+
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999987 7889999999999999999999999999999996
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=268.37 Aligned_cols=256 Identities=27% Similarity=0.505 Sum_probs=230.8
Q ss_pred CCCcccccccCcceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEeccCCCCeEEEEECCCCC
Q 002591 600 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMP 678 (903)
Q Consensus 600 ~~~~~~d~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t-~~~~~~l~~h~~~V~~l~fspdg~ 678 (903)
...++||..++ .....+++|++.|.+|+|+..|++||+++.|-.+++||.++ .++++.+.+|...|.+++|-|.|.
T Consensus 130 ~tikv~D~~tg---~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd 206 (406)
T KOG0295|consen 130 ATIKVFDTETG---ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD 206 (406)
T ss_pred ceEEEEEccch---hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCC
Confidence 34455555544 45889999999999999999999999999998899999986 678889999999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceeEE
Q 002591 679 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMR 755 (903)
Q Consensus 679 ~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~---~~~~~~v~ 755 (903)
+|++++.|.+|+.|++.+ +.++.+|.+|...|..++.+.||. ++++|+.|.+|++|-+.++.|...+ +..+.+++
T Consensus 207 ~ilS~srD~tik~We~~t-g~cv~t~~~h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~ 284 (406)
T KOG0295|consen 207 HILSCSRDNTIKAWECDT-GYCVKTFPGHSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIA 284 (406)
T ss_pred eeeecccccceeEEeccc-ceeEEeccCchHhEEEEEecCCee-EEEecCCCceEEEEEeccchhhhhhhccccceEEEE
Confidence 999999999999999998 899999999999999999998865 8889999999999999999665444 44567777
Q ss_pred EecCC---------------CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 002591 756 FQPHL---------------GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 819 (903)
Q Consensus 756 ~sp~~---------------~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~ 819 (903)
|.|.. ..+.+++.|++|++||+.++.++.++.+|..+|..++|+|.|+||+++.+| ++++||++
T Consensus 285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred ecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 66531 377788889999999999999999999999999999999999999999999 99999998
Q ss_pred CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEEC
Q 002591 820 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 863 (903)
Q Consensus 820 s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl 863 (903)
+. .|.+.+..|..-++++.|+.+..++++|+-|..+++|..
T Consensus 365 ~~---~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 365 NL---QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cc---eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 87 899999999999999999999999999999999999974
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=257.74 Aligned_cols=278 Identities=22% Similarity=0.321 Sum_probs=247.1
Q ss_pred EeecCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 002591 618 SVRASTSKVICCHFSS---DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 694 (903)
Q Consensus 618 ~l~~H~~~V~~l~fsp---dg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 694 (903)
+..+|+.+|..++||| +|-+|++++.|+.-.+-+-+++.-+-+|.+|.+.|+..+++.+..+.++++.|-+.+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4578999999999986 8889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCee----eEEeecCceeEEEecCCCEEEEEEcCC
Q 002591 695 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQPHLGRYLAAAAEN 770 (903)
Q Consensus 695 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~----~~~~~~~~~~v~~sp~~~~ll~~s~dg 770 (903)
-+ +..+..|. |..-|.+++|+.|.++++ +|+.+..+||||++..+. +.-..+.+..+.|...+..|++++.|+
T Consensus 89 ~t-gdelhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 89 VT-GDELHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hh-hhhhhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 98 66677775 888899999999987666 999999999999987652 233445677888999999999999999
Q ss_pred eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 002591 771 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 850 (903)
Q Consensus 771 ~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~ 850 (903)
+|++||.+++..+..+. ...+|+++.++++|++|.++....|++||..+. ..++.++. ...|.+...+|+...++
T Consensus 166 tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k~-P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYKM-PCNVESASLHPKKEFFV 240 (334)
T ss_pred ceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeeccC-ccccccccccCCCceEE
Confidence 99999999999999887 678899999999999998888779999999876 34444333 56788999999999999
Q ss_pred EEECCCeEEEEECCCCcEE-E-EccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 851 VIGCYQSLELWNMSENKTM-T-LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 851 t~s~dg~I~vwdl~~~~~~-~-~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+|+.|..++.||+.+++.+ . ..+|.++|.|+.|+|+|...++||.||+|+||.
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 9999999999999999988 3 379999999999999999999999999999993
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-29 Score=276.63 Aligned_cols=343 Identities=18% Similarity=0.292 Sum_probs=252.1
Q ss_pred CCCceec--cCCCeeeeCCcchhhhhhccccccCCCCCceEEeeecCCCC-----CcCCCCcccccccCcceeeeeEeec
Q 002591 549 DGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTD-----PRDAGGRGMDVSQGFSFKEANSVRA 621 (903)
Q Consensus 549 dg~~~~~--~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~d~~~-----~~~~~~~~~d~~~~~~~~~~~~l~~ 621 (903)
.|.+.+. ...+.+||+++|+....+-..... ..+.+....++.. -.|+.+++|+...+ ....++.+
T Consensus 33 ~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k----~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~---~~~~tfng 105 (888)
T KOG0306|consen 33 KGRAVAVSALEQVNIWDLRTGEIEKKLILLKKK----AEVTCLRSSDDILLLAVGYADGSVQIFSLESE---EILITFNG 105 (888)
T ss_pred CCcEEEEeccccEeEEeeecchhhhhhhhhccc----ceEEEeeccCCcceEEEEecCceEEeeccCCC---ceeeeecc
Confidence 3665554 335578999999766554321111 2344445545544 24566677766644 67788999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCcee
Q 002591 622 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 701 (903)
Q Consensus 622 H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~ 701 (903)
|...|+++.|+..|.+||+|+.|+.|.|||+-...-...+++|.+.|+..-|..+.++|++.|.|+.|++||+++ ..|+
T Consensus 106 HK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~t-qhCf 184 (888)
T KOG0306|consen 106 HKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLET-QHCF 184 (888)
T ss_pred cccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccc-ceee
Confidence 999999999999999999999999999999998888999999999999999999889999999999999999997 6677
Q ss_pred EEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEc-------------------------------------------
Q 002591 702 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI------------------------------------------- 738 (903)
Q Consensus 702 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi------------------------------------------- 738 (903)
.+...|...|+.+++++ .++++++.|+.+++|++
T Consensus 185 ~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c 261 (888)
T KOG0306|consen 185 ETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVC 261 (888)
T ss_pred eEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEE
Confidence 77777777777777765 24456666777777776
Q ss_pred --------------------------------------------------------------------------------
Q 002591 739 -------------------------------------------------------------------------------- 738 (903)
Q Consensus 739 -------------------------------------------------------------------------------- 738 (903)
T Consensus 262 ~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l 341 (888)
T KOG0306|consen 262 QGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLL 341 (888)
T ss_pred ecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEe
Confidence
Q ss_pred ------------------------------------------------------------CCCeeeEEeecC-ceeEEEe
Q 002591 739 ------------------------------------------------------------NNGSCTRVFKGG-TAQMRFQ 757 (903)
Q Consensus 739 ------------------------------------------------------------~t~~~~~~~~~~-~~~v~~s 757 (903)
.+.+|++++... +.+.+|.
T Consensus 342 ~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fv 421 (888)
T KOG0306|consen 342 ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFV 421 (888)
T ss_pred ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEec
Confidence 222222222111 1112222
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC-----cceEE---
Q 002591 758 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-----GECVH--- 828 (903)
Q Consensus 758 p~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~-----~~~i~--- 828 (903)
|.+.++++|...|.+.+||+.....+.++.+|.+.|.+++.+||++.+++++.| +|++||+.--.. .+.+.
T Consensus 422 pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~ 501 (888)
T KOG0306|consen 422 PGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH 501 (888)
T ss_pred CCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeecc
Confidence 333333333333333333333333333456789999999999999999999999 999999853211 11111
Q ss_pred -EeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEc
Q 002591 829 -ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 829 -~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
..-.-...|.++.++||+++|+++--|.+|+||-+.+-+.. .+.+|.-+|.|+..+||+++++|||.|..|+||
T Consensus 502 ~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 502 TRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred ceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 01112567899999999999999999999999999998877 899999999999999999999999999999999
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-30 Score=287.17 Aligned_cols=281 Identities=22% Similarity=0.378 Sum_probs=251.4
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 002591 618 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 697 (903)
Q Consensus 618 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~ 697 (903)
.|+..+..|..++|+|...+++++-..|.|.+||..-+.++..|.+|.++|..|+|+|...++++|++|-+|+||+.++
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~- 82 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT- 82 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-
Confidence 3556678899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceeEEEecCCCEEEEEEcCCeEEE
Q 002591 698 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSI 774 (903)
Q Consensus 698 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~---~~~v~~sp~~~~ll~~s~dg~I~i 774 (903)
.+|+.++.||-+.|..+.||+.-..+| ++++|-+|+||+..+++|+.++.++ +.|..|+|....+++++-|-+|+|
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 889999999999999999999987555 9999999999999999999999886 456779999999999999999999
Q ss_pred EECCCC-----------------------------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc
Q 002591 775 LDAETQ-----------------------------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG 824 (903)
Q Consensus 775 ~D~~t~-----------------------------~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~ 824 (903)
||+... -..+.+++|...|+-++|+|.-.+|++|++| .|++|.+... +.
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet-Ka 240 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-KA 240 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc-cc
Confidence 997521 1234678999999999999999999999999 9999999753 33
Q ss_pred ceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEc
Q 002591 825 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 825 ~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
..+.+..+|.+.|.++.|||..+.|++.+.|++|+|||+...+.+ ++....+..+.++.+|..++++.|- |+-+.+|
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VF 318 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVF 318 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEE
Confidence 567778899999999999999999999999999999999999888 6667778899999999999887764 5545454
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-30 Score=253.90 Aligned_cols=279 Identities=16% Similarity=0.257 Sum_probs=236.9
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 002591 618 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 697 (903)
Q Consensus 618 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~ 697 (903)
.+.+|..+++-|.|+.+|.+|++++.|.++.||-..+|+.+-++.+|.+.|+|++.+-+.++|++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t- 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET- 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC-
Confidence 4678999999999999999999999999999999889999999999999999999999999999999999999999998
Q ss_pred CceeEEeccCCCceEEEEecCCCCeEEEEEe----CCCcEEEEEcCC-------CeeeEEee---cCceeEEEecCCCEE
Q 002591 698 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSINN-------GSCTRVFK---GGTAQMRFQPHLGRY 763 (903)
Q Consensus 698 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs----~Dg~I~iwDi~t-------~~~~~~~~---~~~~~v~~sp~~~~l 763 (903)
++.+..++ ...+|..+.|+.+++.++++.. ..+.|.++|++. .++...+. ..+...-|.|.+..|
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 77888777 5678999999999886665432 347899999983 33344433 356677899999999
Q ss_pred EEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEE
Q 002591 764 LAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 841 (903)
Q Consensus 764 l~~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~ 841 (903)
++|..+|.|.+||++++ +.+.....|...|+.+++++|..++++++.| +.++||+++. .+++.+.. +.+|++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~t-e~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYTT-ERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEeee-ccccccee
Confidence 99999999999999998 4555567799999999999999999999999 9999999876 56666555 78999999
Q ss_pred EeCCCCEEEEEECCCeEEE--EECCCC------------cEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEc
Q 002591 842 FHPTYPSLLVIGCYQSLEL--WNMSEN------------KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 842 ~sp~g~~l~t~s~dg~I~v--wdl~~~------------~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
++|...+++.++.-....| =+.+.+ +.+ .+.+|-++|++++|+|+|+..++|++||.|||.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 9999988888876542222 222222 223 678999999999999999999999999999984
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=260.81 Aligned_cols=286 Identities=19% Similarity=0.275 Sum_probs=244.1
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 002591 615 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 694 (903)
Q Consensus 615 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 694 (903)
.+.+|..|++.|.+|+.+|+.+++|||+.|..-.||++.++.....+.+|++.|+++.|+.+|.+||||+.+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceeEEEecCCCEEEEEEcCCe
Q 002591 695 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENV 771 (903)
Q Consensus 695 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~---~~~v~~sp~~~~ll~~s~dg~ 771 (903)
.+ +.....+...-..|.-++|||.+. +|++|+.||.|.+|.+.++...+.+.++ .++-+|.|+|++++++..||+
T Consensus 136 st-g~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 ST-GGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred cc-CceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98 555666666667788899999755 6669999999999999998888888775 445669999999999999999
Q ss_pred EEEEECCCCeEEEEecCC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE-----eecCC---CceEEEE
Q 002591 772 VSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE-----LSCNG---NKFHSCV 841 (903)
Q Consensus 772 I~i~D~~t~~~~~~l~~h-~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~-----~~~~~---~~i~si~ 841 (903)
|++|+.+++.+++.+... .....++.++..+..++.|+.+ .+++-...+++...+... ...++ ..|..+.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 999999999999888743 3457788888888889888888 778877776633222220 01222 3345556
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 842 FHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 842 ~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
|+..-+..++|+-||+|.|||+...++.....|...|+.+.|-+ ..+|++++.||.|++||
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 66677888999999999999999999999999999999999988 78999999999999997
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=248.69 Aligned_cols=274 Identities=18% Similarity=0.265 Sum_probs=244.1
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--eccCCCCeEEEEECCC-CCEEEEEeCCCcEEEEe
Q 002591 617 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWD 693 (903)
Q Consensus 617 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~--l~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IWD 693 (903)
+.+++|...|.+|+|+.+|..||+|+.|++++||+++..+.... .++|.+.|-.++|+|. ...|++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 56788999999999999999999999999999999987655443 5689999999999875 45899999999999999
Q ss_pred CCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceeEEEecCCCEEEEEEcCCe
Q 002591 694 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENV 771 (903)
Q Consensus 694 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~--~~~~~~v~~sp~~~~ll~~s~dg~ 771 (903)
++. ++++.......+.|. +.|+|++.+++ +++.|..|.+.|.++.+....+ +..+..++|+-++..|+.....|.
T Consensus 94 ~r~-~k~~~~i~~~~eni~-i~wsp~g~~~~-~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRS-GKCTARIETKGENIN-ITWSPDGEYIA-VGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred ecc-CcEEEEeeccCcceE-EEEcCCCCEEE-EecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 998 667766665555555 88999988655 8899999999999998877654 456778899988888888888899
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 002591 772 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 850 (903)
Q Consensus 772 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~ 850 (903)
|.|......+++..+..|.....||.|+|+|+|||+|+.| .+.+||+.. ..|++.+..++.+|..+.|+-+|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E---LiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE---LICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH---hhhheeeccccCceEEEEeccCcceee
Confidence 9999999999999999999999999999999999999999 999999964 478888888999999999999999999
Q ss_pred EEECCCeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecC
Q 002591 851 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 896 (903)
Q Consensus 851 t~s~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~D 896 (903)
+++.|..|-|-++.+|..+....++++...++|+|...+||.+++|
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 9999999999999999999989999999999999999999988865
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-29 Score=265.52 Aligned_cols=290 Identities=17% Similarity=0.216 Sum_probs=235.5
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceeEEec-cCCCCeEEEEECCCCCEEEEEeCC
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLE-EHSSLITDVRFSPSMPRLATSSFD 686 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~----~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~D 686 (903)
.......+.+|+..|.++++.|.|.+|++|+.|.+|++||+... +..+.+. .....|.++.|++.+..|++.+..
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 55666788999999999999999999999999999999998732 2222332 345679999999999999998888
Q ss_pred CcEEEEeCCCCCcee------------EEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEee-----
Q 002591 687 KTVRVWDADNPGYSL------------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK----- 748 (903)
Q Consensus 687 g~I~IWDl~~~~~~~------------~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~-~~~~~~----- 748 (903)
..++|+|-+. ...+ ...+||...++|.+|+|.....|+||+.||++||||+...+ .+.+|+
T Consensus 236 aqakl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 236 AQAKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred cceeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence 8999999864 2222 23358999999999999998888899999999999998754 333443
Q ss_pred ---cCceeEEEecCCCEEEEEEcCCeEEEEECCCCe--E-EEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 002591 749 ---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA--C-RLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTVG 819 (903)
Q Consensus 749 ---~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~--~-~~~l~~h~~--~V~sl~~spdg~~lasgs~d-~I~iwdl~ 819 (903)
..+..++|++++..|++++.||.|.+||..... + .+.-.+|.. .|+||.|++||++|++-+.| ++++||++
T Consensus 315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 246779999999999999999999999976542 2 233346777 89999999999999999888 99999999
Q ss_pred CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEC------CCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEE
Q 002591 820 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVAS 892 (903)
Q Consensus 820 s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~------dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaS 892 (903)
..++...+..-......-+.|+|+|+.+.|++|.. .+.+++||..+...+ .+......|..+.|+|.-+.|+.
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~ 474 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFA 474 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheee
Confidence 87644333333333456788999999999999865 368999999998877 66666888999999999888999
Q ss_pred EecCCcEEEc
Q 002591 893 ASHDKFVKLW 902 (903)
Q Consensus 893 gs~DG~I~IW 902 (903)
|+.||.++||
T Consensus 475 gsgdG~~~vy 484 (641)
T KOG0772|consen 475 GSGDGTAHVY 484 (641)
T ss_pred ecCCCceEEE
Confidence 9999999986
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=283.72 Aligned_cols=245 Identities=29% Similarity=0.483 Sum_probs=218.2
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 002591 615 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 693 (903)
Q Consensus 615 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~-~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 693 (903)
+...+.+|...|++++|+|++++|++++.|++|+|||+ ..+..++++++|...|++++|+|++++|++|+.|++|+|||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence 34445789999999999999999999999999999999 56699999999999999999999999999999999999999
Q ss_pred CCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe--eeEEeec-----CceeEEEecCCCEEEEE
Q 002591 694 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKG-----GTAQMRFQPHLGRYLAA 766 (903)
Q Consensus 694 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~--~~~~~~~-----~~~~v~~sp~~~~ll~~ 766 (903)
+++ +++++.+.+|...|++++|++++.. |++++.|+.|+|||+.++. +...+.. .+..++|+|++.+++++
T Consensus 275 ~~~-~~~~~~l~~hs~~is~~~f~~d~~~-l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 275 VRT-GECVRKLKGHSDGISGLAFSPDGNL-LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA 352 (456)
T ss_pred ccC-CeEEEeeeccCCceEEEEECCCCCE-EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEe
Confidence 998 8999999999999999999999775 5577889999999999999 5555532 35778999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCe---EEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC-CCceEEEE
Q 002591 767 AAENVVSILDAETQACRLSLQGHTKPI---DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCV 841 (903)
Q Consensus 767 s~dg~I~i~D~~t~~~~~~l~~h~~~V---~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~-~~~i~si~ 841 (903)
..|+.+++||+..++++..+.+|...+ .+..+++.+.++++++.| .|++||+.++ ..+..+..| ...+..+.
T Consensus 353 ~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~~ 429 (456)
T KOG0266|consen 353 SLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDLS 429 (456)
T ss_pred cCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceeccc
Confidence 999999999999999999999988753 344557789999999999 9999999875 566677777 78899999
Q ss_pred EeCCCCEEEEEE--CCCeEEEEECC
Q 002591 842 FHPTYPSLLVIG--CYQSLELWNMS 864 (903)
Q Consensus 842 ~sp~g~~l~t~s--~dg~I~vwdl~ 864 (903)
+++...++++++ .|+.|++|...
T Consensus 430 ~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 430 SHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999998 68899999764
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-30 Score=267.28 Aligned_cols=286 Identities=21% Similarity=0.295 Sum_probs=244.8
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEeccCCCCeEEEEECCCCCEEEEEeCCCcE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 689 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I 689 (903)
+-.....+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+++.|.++++++++++.|+.+
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL 243 (459)
T ss_pred chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence 334556788899999999999998999999999999999987555 778888999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcC
Q 002591 690 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE 769 (903)
Q Consensus 690 ~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~d 769 (903)
++|+++. .....++.+|.+.|+++.|...... +++|+.|.+|++||+....|.+++.....+..+......++++..|
T Consensus 244 r~Wnvd~-~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~D 321 (459)
T KOG0288|consen 244 RLWNVDS-LRLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFD 321 (459)
T ss_pred eeeeccc-hhhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccc
Confidence 9999997 7788999999999999999877554 6699999999999999999998776544444433335677888889
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec----CCCceEEEEEeC
Q 002591 770 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC----NGNKFHSCVFHP 844 (903)
Q Consensus 770 g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~----~~~~i~si~~sp 844 (903)
++|++||+++..++.....+. .|+++..++++..|.+++.| ++.++|+++... ...+.. .....+.++|+|
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI---~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI---RQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred cceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccE---EEEeeccccccccccceeEECC
Confidence 999999999999999988765 99999999999988888888 999999998633 222221 133478899999
Q ss_pred CCCEEEEEECCCeEEEEECCCCcEE-EEcc-CCC-CEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 845 TYPSLLVIGCYQSLELWNMSENKTM-TLTA-HEG-LIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 845 ~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~-h~~-~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
++.|+++|+.||.|+||++.++++. .+.. +.. .|++++|+|.|.++++++.++.+.+|.
T Consensus 398 d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 398 DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999999999999999987 3333 333 699999999999999999999999995
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=258.28 Aligned_cols=243 Identities=22% Similarity=0.441 Sum_probs=223.4
Q ss_pred CCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcE
Q 002591 654 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 733 (903)
Q Consensus 654 t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I 733 (903)
..+..+.+.+|.+.|.||++.|.+.+|++|+.|++|+|||+.+ +....++.||-..|..+++++...++| +|+.|+.|
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~rHpYlF-s~gedk~V 217 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKRHPYLF-SAGEDKQV 217 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeecccCceEE-EecCCCee
Confidence 3466778889999999999999999999999999999999998 888899999999999999999988666 99999999
Q ss_pred EEEEcCCCeeeEEeecC---ceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002591 734 RYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 810 (903)
Q Consensus 734 ~iwDi~t~~~~~~~~~~---~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~ 810 (903)
+.||++..+.++.+.++ +.++..+|....+++++.|.+++|||+++...+..+.+|..+|.++.+.|...-+++|+.
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 99999999999988775 677888999999999999999999999999999999999999999999998889999999
Q ss_pred C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCC
Q 002591 811 D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG 888 (903)
Q Consensus 811 d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~ 888 (903)
| +|++||++.+ +....+..|...+.+++.+|....|++++.| .|+-|++..+..+ .+.+|...|++++...|+
T Consensus 298 D~tvrlWDl~ag---kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 298 DSTVRLWDLRAG---KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred CceEEEeeeccC---ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-
Confidence 9 9999999988 6777888889999999999998878877766 6999999999887 788999999999998776
Q ss_pred EEEEEecCCcEEEcC
Q 002591 889 YVASASHDKFVKLWK 903 (903)
Q Consensus 889 ~LaSgs~DG~I~IWd 903 (903)
++++|++.|.|.+||
T Consensus 373 v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWD 387 (460)
T ss_pred eEEEcCCceEEEEEe
Confidence 788999999999997
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-30 Score=261.37 Aligned_cols=277 Identities=20% Similarity=0.387 Sum_probs=229.9
Q ss_pred CCCceEEeeecCCCCCcCCCCcccccccCcceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 002591 582 LDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL 661 (903)
Q Consensus 582 ~d~~v~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l 661 (903)
..+.|-+.-.+|+........+.+.+++.-+..++..+.||++.|.|+.|.. +.|++|+.|.+|+|||+.+++++.++
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHH
Confidence 3344555555555443333334444444446778889999999999999864 49999999999999999999999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCC--ceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcC
Q 002591 662 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 739 (903)
Q Consensus 662 ~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~ 739 (903)
.+|...|..+.|+.. ++++++.|.+|++||+..+. .+.+.+.||...|..+.|... +|++++.|.+|++|++.
T Consensus 274 ihHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 274 IHHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWSTS 348 (499)
T ss_pred hhhcceeEEEEEeCC--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEEecCCceEEEEecc
Confidence 999999999999854 99999999999999998754 345678899999999999733 77899999999999999
Q ss_pred CCeeeEEeecCceeEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEE
Q 002591 740 NGSCTRVFKGGTAQMRFQPH-LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT 817 (903)
Q Consensus 740 t~~~~~~~~~~~~~v~~sp~-~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwd 817 (903)
++++++++.++...++..-. +..+++|++|++|++||+..|.++..+++|+.-|.||.|+ .+.|++|+.| +|+|||
T Consensus 349 t~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWd 426 (499)
T KOG0281|consen 349 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWD 426 (499)
T ss_pred ceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEe
Confidence 99999999998877776554 4556667889999999999999999999999999999997 6789999999 999999
Q ss_pred CCCCCCc------ceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE
Q 002591 818 VGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 869 (903)
Q Consensus 818 l~s~~~~------~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~ 869 (903)
+..+... .|+..+..|.+.|..+.|. ...|++++.|.+|.|||+..+...
T Consensus 427 l~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 427 LQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence 9876443 3666777788899999984 557999999999999999876544
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-27 Score=243.65 Aligned_cols=287 Identities=21% Similarity=0.310 Sum_probs=239.9
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeC--CCcE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTV 689 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~--Dg~I 689 (903)
.++..+.++.-.+.|+++.|+.+|.+|++++.|.+|+|||..+++.++++..+...|..++|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 45666777778899999999999999999999999999999999999999999999999999888777777776 8999
Q ss_pred EEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-CceeEEEecCCCEEEEEEc
Q 002591 690 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-GTAQMRFQPHLGRYLAAAA 768 (903)
Q Consensus 690 ~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~-~~~~v~~sp~~~~ll~~s~ 768 (903)
|..++.+ .+.++.|.||...|.+|+.+|-++. +++++.|++|++||++..+|...+.. +...++|.|.|-.++++..
T Consensus 83 ryLsl~d-NkylRYF~GH~~~V~sL~~sP~~d~-FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHD-NKYLRYFPGHKKRVNSLSVSPKDDT-FLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeec-CceEEEcCCCCceEEEEEecCCCCe-EEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecC
Confidence 9999998 7889999999999999999999764 55999999999999999998887764 4556789999888888888
Q ss_pred CCeEEEEECCCC--eEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEE
Q 002591 769 ENVVSILDAETQ--ACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 842 (903)
Q Consensus 769 dg~I~i~D~~t~--~~~~~l~---~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~ 842 (903)
.+.|++||++.. .+..++. +.....+.|.|+|||++|+.++.. .+++.|.-+|.....+.........-..++|
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 889999999975 2333332 346778999999999988877777 8999999888533333332222333367889
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCcEE-EEcc-CCCCEEEEEEecCCCEEEEEecCCcEEEc
Q 002591 843 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 843 sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~-h~~~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
.|++.++++|+.||+|.+|++++++.+ .+.+ +.+++.++.|+|.-.++++++ ..+.+|
T Consensus 241 tPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence 999999999999999999999999988 5555 789999999999877777664 457776
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=249.65 Aligned_cols=284 Identities=22% Similarity=0.392 Sum_probs=238.8
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------CceeEEeccCCCCeEEEEECCC
Q 002591 615 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSPS 676 (903)
Q Consensus 615 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t------------------~~~~~~l~~h~~~V~~l~fspd 676 (903)
+...+..|..++.|.+|++||.++|||+.|..|+|+|++. ...++++..|.+.|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4456778999999999999999999999999999999861 1356778899999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCC--ceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe------e
Q 002591 677 MPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------K 748 (903)
Q Consensus 677 g~~Lasgs~Dg~I~IWDl~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~------~ 748 (903)
...|++|+.|++|++||+.... +..+.| ....+|.+|.|+|.|++++ .|..-.++++||+++..|...- .
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCcccccc
Confidence 9999999999999999997532 112233 3567899999999988655 8888899999999999876543 4
Q ss_pred cCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC-CC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc
Q 002591 749 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 825 (903)
Q Consensus 749 ~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~-h~-~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~ 825 (903)
+.+.++.+++.++.+++++.||.|+|||--+++|+.++.. |. ..|.+..|..+++||++.+.| .|++|.+.++ .
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R 338 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---R 338 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---c
Confidence 5688999999999999999999999999999999998864 54 469999999999999999999 9999999988 6
Q ss_pred eEEEeecCCC-----ceEEEEEeCCCCEEEEEECC-CeEEEEECCCCcEE--EEccCCCCEEEEEEecCCCEEEEEecCC
Q 002591 826 CVHELSCNGN-----KFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 897 (903)
Q Consensus 826 ~i~~~~~~~~-----~i~si~~sp~g~~l~t~s~d-g~I~vwdl~~~~~~--~~~~h~~~V~sl~~spdg~~LaSgs~DG 897 (903)
++.++.+.+. --+...|+....+++.-... +.++-||.++...+ .-.+|.+.|..+.-+|.+.-|++|++|-
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 6666655321 12345677777777766553 68999999998876 4458999999999999999999999999
Q ss_pred cEEEcC
Q 002591 898 FVKLWK 903 (903)
Q Consensus 898 ~I~IWd 903 (903)
.+|+|.
T Consensus 419 raRFWy 424 (430)
T KOG0640|consen 419 RARFWY 424 (430)
T ss_pred eeeeee
Confidence 999994
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=259.99 Aligned_cols=281 Identities=18% Similarity=0.340 Sum_probs=236.5
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 690 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~ 690 (903)
.-..+..+.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+....+..++..|.+.|..|++.. ..+++++.|++|+
T Consensus 55 akPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 55 AKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred hccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCccee
Confidence 344567789999999999999987 6899999999999999999999999999999999999987 6899999999999
Q ss_pred EEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceeEEEecCCCEEEEEE
Q 002591 691 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAA 767 (903)
Q Consensus 691 IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~~~v~~sp~~~~ll~~s 767 (903)
.|.++. ..++++.+ ...+..|.-+.. ...++||+. .|.|||......+..+.- .+.++.|+|....+++++
T Consensus 133 ~wk~~~--~p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 133 QWKIDG--PPLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC 206 (433)
T ss_pred eeeccC--Ccceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeee
Confidence 999985 46677764 345667776654 346778874 599999988888877763 457788999886666555
Q ss_pred -cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 002591 768 -AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 845 (903)
Q Consensus 768 -~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~ 845 (903)
+|+.|.+||+++..++..+. -.-.-+.|||+|.+..|+++++| .++.||++... ..+....+|...|.++.|+|.
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfspt 283 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPT 283 (433)
T ss_pred ccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCC
Confidence 89999999999998877654 23445789999988889999999 99999998764 566777889999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCcEEEE--ccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 846 YPSLLVIGCYQSLELWNMSENKTMTL--TAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 846 g~~l~t~s~dg~I~vwdl~~~~~~~~--~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
|..|++|+.|.+|+||.++.+....+ ...-..|.|+.|+-|.+||++||+|+.|++|+
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 99999999999999999998876522 23345799999999999999999999999996
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-28 Score=262.87 Aligned_cols=246 Identities=23% Similarity=0.359 Sum_probs=223.2
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I 691 (903)
+-..++.|+-..-+|+++.|-...+++++|+.|..|+||+..+++.++.|+.|.+.|.||+.+|...+++++|.|-+|++
T Consensus 44 tqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKl 123 (794)
T KOG0276|consen 44 TQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKL 123 (794)
T ss_pred cceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEE
Confidence 66788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceeEEEecCC--CEEEEE
Q 002591 692 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHL--GRYLAA 766 (903)
Q Consensus 692 WDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~~~v~~sp~~--~~ll~~ 766 (903)
||.+..-.+..+|.||+..|.+++|.|.....+++|+-|++|++|.+....+..++++ +++++++-+.+ .++++|
T Consensus 124 W~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg 203 (794)
T KOG0276|consen 124 WDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG 203 (794)
T ss_pred eeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec
Confidence 9999977889999999999999999999999999999999999999999988888876 57888887765 589999
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 002591 767 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 845 (903)
Q Consensus 767 s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~ 845 (903)
+.|.+|+|||..+..|+.++++|...|..++|+|.-.+|++|++| +++||+..+. +....+.-....+.+++..+.
T Consensus 204 aDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~ 280 (794)
T KOG0276|consen 204 ADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKG 280 (794)
T ss_pred CCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCC
Confidence 999999999999999999999999999999999999999999999 9999998775 334444445677889998888
Q ss_pred CCEEEEEECCCeEEE
Q 002591 846 YPSLLVIGCYQSLEL 860 (903)
Q Consensus 846 g~~l~t~s~dg~I~v 860 (903)
++.+++|..+|.|.|
T Consensus 281 ~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 281 DGKIAVGFDEGSVTV 295 (794)
T ss_pred CCeEEEeccCCcEEE
Confidence 888887777665443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-27 Score=248.83 Aligned_cols=242 Identities=33% Similarity=0.609 Sum_probs=215.7
Q ss_pred eeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 002591 616 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 695 (903)
Q Consensus 616 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~ 695 (903)
...+..|...|.++.|++++++|++++.||.|++||+.+++.+..+..|...|.++.|++++.++++++.|+.|++||+.
T Consensus 44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 44 LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 34456788899999999999999999999999999999888899999999999999999998899988889999999998
Q ss_pred CCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceeEEEecCCCEEEEEEcCCeE
Q 002591 696 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVV 772 (903)
Q Consensus 696 ~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~~~v~~sp~~~~ll~~s~dg~I 772 (903)
+ ......+..|...|.+++|+|++. ++++++.|+.|++||+++++.+..+.. .+..+.|++++..+++++.++.|
T Consensus 124 ~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 201 (289)
T cd00200 124 T-GKCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201 (289)
T ss_pred C-cEEEEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence 6 667778888999999999999854 666777799999999998887776653 56789999999999999999999
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 002591 773 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 851 (903)
Q Consensus 773 ~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t 851 (903)
++||+++++.+..+..|...|.+++|++++.++++++.+ .|++||+.++ ..+..+..+...+.+++|++++.+|++
T Consensus 202 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred EEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEE
Confidence 999999999999888899999999999998899988856 9999999875 556666678889999999999999999
Q ss_pred EECCCeEEEEE
Q 002591 852 IGCYQSLELWN 862 (903)
Q Consensus 852 ~s~dg~I~vwd 862 (903)
++.|+.|++|+
T Consensus 279 ~~~d~~i~iw~ 289 (289)
T cd00200 279 GSADGTIRIWD 289 (289)
T ss_pred ecCCCeEEecC
Confidence 99999999996
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=249.34 Aligned_cols=276 Identities=21% Similarity=0.363 Sum_probs=232.9
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCC---CEEEEEeCCCcEEEEeCCCC
Q 002591 621 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM---PRLATSSFDKTVRVWDADNP 697 (903)
Q Consensus 621 ~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg---~~Lasgs~Dg~I~IWDl~~~ 697 (903)
.|.+-|.+|... +++|++|++||.++|||. .|+..+.+.+|.++|.+++|.-.. ..|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488889988887 679999999999999996 589999999999999998885433 36999999999999998864
Q ss_pred Cc---eeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCC-------------------------eeeEEeec
Q 002591 698 GY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-------------------------SCTRVFKG 749 (903)
Q Consensus 698 ~~---~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~-------------------------~~~~~~~~ 749 (903)
.. .+....||...|-++...+++.. +++|+.|.+|+||+..+. ..+..+.+
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCe-EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 32 23344599999999999999774 569999999999994321 11122233
Q ss_pred ---CceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc
Q 002591 750 ---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 825 (903)
Q Consensus 750 ---~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~ 825 (903)
.+..+.|.+ ...+++++.|.+|+.||+.++.++.++. ....++|+.++|..++|++|+.| .|++||.+++....
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 355677877 7889999999999999999999988877 45789999999999999999999 99999999987777
Q ss_pred eEEEeecCCCceEEEEEeCCCCE-EEEEECCCeEEEEECCCCc-EE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEc
Q 002591 826 CVHELSCNGNKFHSCVFHPTYPS-LLVIGCYQSLELWNMSENK-TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 826 ~i~~~~~~~~~i~si~~sp~g~~-l~t~s~dg~I~vwdl~~~~-~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
....+.+|.+.|.++.|+|...+ |++++.|+++++||+++.+ .+ .+.+|.+.|.++.|. ++.+|++|+.|+.|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 78899999999999999997654 6778899999999999877 44 888999999999995 57799999999999998
Q ss_pred C
Q 002591 903 K 903 (903)
Q Consensus 903 d 903 (903)
+
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 5
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=239.62 Aligned_cols=276 Identities=21% Similarity=0.376 Sum_probs=230.7
Q ss_pred eEEEEEcCC-CCEEEEEe-------CCCcEEEEECCCCceeEEec--cCCCCeEEEEECCCC-CEEEEEeCCCcEEEEeC
Q 002591 626 VICCHFSSD-GKLLATGG-------HDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSM-PRLATSSFDKTVRVWDA 694 (903)
Q Consensus 626 V~~l~fspd-g~~Latgs-------~Dg~V~vWd~~t~~~~~~l~--~h~~~V~~l~fspdg-~~Lasgs~Dg~I~IWDl 694 (903)
=+++.|||- ..+||++. ..|++.|.++...+-+..+. .-.+.+.+|+|+++. ..+++++.||+++|||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 367889982 23444432 36889999987554444443 346789999999875 47888899999999999
Q ss_pred CCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCcee---EEEecCC-CEEEEEEcCC
Q 002591 695 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHL-GRYLAAAAEN 770 (903)
Q Consensus 695 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~---v~~sp~~-~~ll~~s~dg 770 (903)
..+..++..++.|...|.++.|++..++.+++++.|++|++|+......+.+|.++..+ ..|+|.. +.++.++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 88888999999999999999999988888889999999999999999999999987544 5688876 5677788899
Q ss_pred eEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC-C
Q 002591 771 VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-P 847 (903)
Q Consensus 771 ~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp-dg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g-~ 847 (903)
.+++||++..-....+..|...|.|+.|+. +.++|+|++.| .|++||+++-. ..+.++.+|+-.|..+.|+|.. .
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhh
Confidence 999999998755555899999999999998 45589999999 99999999764 5688889999999999999965 5
Q ss_pred EEEEEECCCeEEEEECCCCcEE--EEccCCCCEEEEEEec-CCCEEEEEecCCcEEEcC
Q 002591 848 SLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK 903 (903)
Q Consensus 848 ~l~t~s~dg~I~vwdl~~~~~~--~~~~h~~~V~sl~~sp-dg~~LaSgs~DG~I~IWd 903 (903)
.|++++.|-+++|||....... +..-|..-|..+.|++ +..++|+++.|+.++||+
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 6778888999999999865544 6677899999999987 667999999999999996
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-29 Score=251.74 Aligned_cols=276 Identities=24% Similarity=0.414 Sum_probs=239.4
Q ss_pred eEEEEeCCCceeccC---CCeeeeCCcchhhhhhccccccCCCCCceEEeeecCCCCCcCCCCcccccccCcceeeeeEe
Q 002591 543 LMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV 619 (903)
Q Consensus 543 ~i~~s~dg~~~~~~~---~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~~l 619 (903)
+-.|+|||.|+++++ -+++||.-+|++++++..-.. ..|
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq--------------------------------------d~f 259 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ--------------------------------------DNF 259 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh--------------------------------------cce
Confidence 557899999998854 448899999998887543211 124
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 002591 620 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 698 (903)
Q Consensus 620 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~ 698 (903)
.-|.++|.|++|+.|..+||+|+.||+|+||.+.+|.+++.|. .|+..|+|+.|+.|+..+++++.|.+|||.-+.+ +
T Consensus 260 MMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-G 338 (508)
T KOG0275|consen 260 MMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-G 338 (508)
T ss_pred eecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-c
Confidence 4578899999999999999999999999999999999999997 8999999999999999999999999999999998 8
Q ss_pred ceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-----CceeEEEecCC-CEEEEEEcCCeE
Q 002591 699 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHL-GRYLAAAAENVV 772 (903)
Q Consensus 699 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~-----~~~~v~~sp~~-~~ll~~s~dg~I 772 (903)
++++.|.+|+..|+...|.++|.+++ +++.||+|++|+.++.+|+.+|+. .+..+...|.+ ..++++...++|
T Consensus 339 K~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv 417 (508)
T KOG0275|consen 339 KCLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV 417 (508)
T ss_pred hhHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence 99999999999999999999988766 999999999999999999999875 34556666665 678888889999
Q ss_pred EEEECCCCeEEEEecC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 002591 773 SILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 848 (903)
Q Consensus 773 ~i~D~~t~~~~~~l~~---h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~ 848 (903)
+|.++. |..++.+.. ..+...+++.+|.|.++++.++| .++.|.+.++ ..-..+..|+..+..++-+|..+.
T Consensus 418 ~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNl 493 (508)
T KOG0275|consen 418 YIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNL 493 (508)
T ss_pred EEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccch
Confidence 999875 566666653 34567788899999999999999 8999999887 666778888999999999999999
Q ss_pred EEEEECCCeEEEEE
Q 002591 849 LLVIGCYQSLELWN 862 (903)
Q Consensus 849 l~t~s~dg~I~vwd 862 (903)
|++-+.||.+++|.
T Consensus 494 lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 494 LASYSEDGLLKLWK 507 (508)
T ss_pred hhhhcccchhhhcC
Confidence 99999999999995
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-29 Score=265.99 Aligned_cols=246 Identities=18% Similarity=0.313 Sum_probs=218.5
Q ss_pred CceeEEeccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcE
Q 002591 655 LKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 733 (903)
Q Consensus 655 ~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I 733 (903)
.+.+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++...+.++++|.+|..+|.+++|+.++..+| +++.|+.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeecceee
Confidence 466788999999999999999 7889999999999999999988999999999999999999999998777 99999999
Q ss_pred EEEEcCCCeeeEEeec--CceeEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002591 734 RYWSINNGSCTRVFKG--GTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 810 (903)
Q Consensus 734 ~iwDi~t~~~~~~~~~--~~~~v~~sp~~-~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~ 810 (903)
++||+++|+++..|.. ...++.|.|++ +.|++|+.|+.|+.||+++++.+.++..|-+.|..|.|-++|+++++.++
T Consensus 283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 9999999999998875 46789999999 88999999999999999999999999999999999999999999999999
Q ss_pred C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE----EEccCC--CCEEEEEE
Q 002591 811 D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----TLTAHE--GLIAALAV 883 (903)
Q Consensus 811 d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~----~~~~h~--~~V~sl~~ 883 (903)
| +++||+.+.....+.+... +.....+|..+|+++++++=+.|+.|.+|.+...-.+ .+.+|. +.-..+.|
T Consensus 363 dks~riWe~~~~v~ik~i~~~--~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADP--EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred CccEEEEEcCCCccchhhcch--hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 9 9999999877444433332 2445678899999999999999999999987654333 566664 56677899
Q ss_pred ecCCCEEEEEecCCcEEEcC
Q 002591 884 STETGYVASASHDKFVKLWK 903 (903)
Q Consensus 884 spdg~~LaSgs~DG~I~IWd 903 (903)
+|||++|++|+.||.+.+||
T Consensus 441 SpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cCCCCeEEeecCCccEEEee
Confidence 99999999999999999997
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-27 Score=237.66 Aligned_cols=240 Identities=23% Similarity=0.373 Sum_probs=210.9
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEeCC
Q 002591 617 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDAD 695 (903)
Q Consensus 617 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~ 695 (903)
..+++|.++|..+.|..|+..|++++.|++|+.||+++++.++.+++|...|+.+.-+.-|. .+.+++.|++++|||++
T Consensus 84 ~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 84 WVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred eeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence 44669999999999999999999999999999999999999999999999999998554454 56777889999999999
Q ss_pred CCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceeEEEecCCCEEEEEEcCCeE
Q 002591 696 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVV 772 (903)
Q Consensus 696 ~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~---~~~v~~sp~~~~ll~~s~dg~I 772 (903)
. +.+++++. ....++++.|...+..++ +|+-|+.|++||++...++.++.++ +..+..++++.++++-+.|.++
T Consensus 164 ~-k~~~~t~~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tv 240 (338)
T KOG0265|consen 164 K-KEAIKTFE-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTV 240 (338)
T ss_pred c-cchhhccc-cceeEEEEEeccccccee-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceE
Confidence 7 55666664 456799999998888776 9999999999999999999988775 6778899999999999999999
Q ss_pred EEEECCCC----eEEEEecCCCC----CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEe
Q 002591 773 SILDAETQ----ACRLSLQGHTK----PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 843 (903)
Q Consensus 773 ~i~D~~t~----~~~~~l~~h~~----~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~s 843 (903)
++||++-. .++..+.+|.. ....++|+|++..+.+++.| .+++||.... .++..+.+|.+.|.++.|+
T Consensus 241 rvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fh 317 (338)
T KOG0265|consen 241 RVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFH 317 (338)
T ss_pred EEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc---cEEEEcCCcceeEEEeeec
Confidence 99999864 56777776543 34567999999999999999 9999999765 7899999999999999999
Q ss_pred CCCCEEEEEECCCeEEEEE
Q 002591 844 PTYPSLLVIGCYQSLELWN 862 (903)
Q Consensus 844 p~g~~l~t~s~dg~I~vwd 862 (903)
|....|++++.|++|++=.
T Consensus 318 p~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 318 PTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCCcEEEEeccCceeEeec
Confidence 9999999999999998744
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=233.80 Aligned_cols=266 Identities=22% Similarity=0.381 Sum_probs=216.0
Q ss_pred ccccCCCCCceEEeeecCCCCCcCCCCcccccccCcceeeeeEe-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-
Q 002591 576 LVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD- 653 (903)
Q Consensus 576 ~~~~gs~d~~v~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~~l-~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~- 653 (903)
+++.++.|+.++.|.. ..+-++.++..+ .+|+..|++|+|+|.|++||+|+.|.++.||.-.
T Consensus 29 ilAscg~Dk~vriw~~----------------~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWST----------------SSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED 92 (312)
T ss_pred EEEeecCCceEEEEec----------------CCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC
Confidence 4555556666666643 222256676666 4799999999999999999999999999999855
Q ss_pred -CCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC--CCceeEEeccCCCceEEEEecCCCCeEEEEEeCC
Q 002591 654 -TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 730 (903)
Q Consensus 654 -t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~--~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D 730 (903)
+.+++.++++|...|.|++|+++|.+||+++.|+.|-||.+.. .-.++..+..|+..|..+.|||... +|++|+.|
T Consensus 93 ~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYD 171 (312)
T KOG0645|consen 93 GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYD 171 (312)
T ss_pred CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEeccC
Confidence 5688999999999999999999999999999999999999984 3467789999999999999999754 77899999
Q ss_pred CcEEEEEcCC---CeeeEEeecC---ceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCE
Q 002591 731 GEIRYWSINN---GSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL 804 (903)
Q Consensus 731 g~I~iwDi~t---~~~~~~~~~~---~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~ 804 (903)
.+|++|+-.. -.|+.++.++ +-++.|++.|.++++++.|++|+||-..+.-. ..|...+..+.|. ...
T Consensus 172 nTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~ 245 (312)
T KOG0645|consen 172 NTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--NGV 245 (312)
T ss_pred CeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--ccc
Confidence 9999998772 3477777765 45688999999999999999999998663221 2278899999999 457
Q ss_pred EEEEeCC-eEEEEECCCCCC---cc-eEEEeecCCCceEEEEEeCC-CCEEEEEECCCeEEEEECC
Q 002591 805 LASVSED-SVRVWTVGSGSE---GE-CVHELSCNGNKFHSCVFHPT-YPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 805 lasgs~d-~I~iwdl~s~~~---~~-~i~~~~~~~~~i~si~~sp~-g~~l~t~s~dg~I~vwdl~ 864 (903)
|++++.| .|++|.-..... .. ..+....|+..|+++.|.|. .+.|++++.||.|++|.+.
T Consensus 246 IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 246 IASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 8888877 999998765311 11 12244567889999999995 6789999999999999874
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=252.97 Aligned_cols=274 Identities=19% Similarity=0.306 Sum_probs=239.1
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCcee
Q 002591 623 TSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 701 (903)
Q Consensus 623 ~~~V~~l~fspdg~-~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~ 701 (903)
.+.|.+++|+|... -+|+++ .-.|.||+..+....+++......|.+++|..||++|++|...|.|+|||+.+ ...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence 45799999999554 344443 35799999999888888988999999999999999999999999999999665 6788
Q ss_pred EEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceeEEEecCCC-EEEEEEcCCeEEEEEC
Q 002591 702 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLG-RYLAAAAENVVSILDA 777 (903)
Q Consensus 702 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~---~~~v~~sp~~~-~ll~~s~dg~I~i~D~ 777 (903)
+.+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+.++ +.+..|+|-.+ .+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 9999999999999999999999999999999999999998865455544 56677888766 5777888999999999
Q ss_pred CCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCC
Q 002591 778 ETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 856 (903)
Q Consensus 778 ~t~-~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg 856 (903)
+.. ..+.++. |..+|.++++-|.|.+|++++...|+|||+.++. ..+.....|...|+|+++..++..|++++-|+
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 988 5666655 9999999999999999999999999999998763 44555556889999999999999999999999
Q ss_pred eEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecCCcEEE
Q 002591 857 SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 901 (903)
Q Consensus 857 ~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~I 901 (903)
.|++||+.+-+.+.-....++|.+++.+|++..++.|-.||.+.+
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999998888877788999999999999999999999998754
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-27 Score=247.12 Aligned_cols=276 Identities=24% Similarity=0.384 Sum_probs=243.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeE
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 702 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~ 702 (903)
...|+++...+....++||+.|+.+.++|..+...+.++++|...|+.+.|+++...+++++.|..|+||.... ..+..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~ 297 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPT 297 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCcc
Confidence 34688888888877999999999999999999999999999999999999999999999999999999999987 45667
Q ss_pred EeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-----CceeEEEecCCCEEEEEEcCCeEEEEEC
Q 002591 703 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAENVVSILDA 777 (903)
Q Consensus 703 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~-----~~~~v~~sp~~~~ll~~s~dg~I~i~D~ 777 (903)
....|..+|+.+..+|.++++| +++.|+++.+.|++++.++..... ...+..|+|||..|.++..|+.|+|||+
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 7788999999999999998766 899999999999999998776654 3677889999999999999999999999
Q ss_pred CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCC
Q 002591 778 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 856 (903)
Q Consensus 778 ~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg 856 (903)
.+...+..|.+|.++|..|.|+.+|.||+++++| .|++||+|..+..+.+..- ....+.++.|...|.+|++++.+=
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~--~~~~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD--EKKEVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc--ccccceeEEEcCCCCeEEeeccee
Confidence 9999999999999999999999999999999999 7999999977433333221 233699999999999999998887
Q ss_pred eEEEEECCCCcE--E-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEc
Q 002591 857 SLELWNMSENKT--M-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 857 ~I~vwdl~~~~~--~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
.|++++-.+... + .+..|.+..+++.|.....+++++|.|..++|+
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 788777555443 3 566788899999999999999999999999887
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=268.84 Aligned_cols=269 Identities=27% Similarity=0.473 Sum_probs=237.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-eccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCce
Q 002591 622 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 700 (903)
Q Consensus 622 H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~ 700 (903)
|...|.|..|. ..++++++.|.+|++||..++..+.. +.+|.+.|++++|...+.+|++|+.|.+++|||+.+ +.+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-g~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST-GEC 283 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC-CcE
Confidence 67788899998 45899999999999999999999888 999999999999998888999999999999999887 899
Q ss_pred eEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeE-EEecCCCEEEEEEcCCeEEEEECCC
Q 002591 701 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM-RFQPHLGRYLAAAAENVVSILDAET 779 (903)
Q Consensus 701 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v-~~sp~~~~ll~~s~dg~I~i~D~~t 779 (903)
..++.+|.+.|.++...+. ++++|+.|.+|++|++.++.++..+.++...| +..-++..+++++.|++|.+||+.+
T Consensus 284 ~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred EEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhh
Confidence 9999999999999998744 67789999999999999999999888644332 2334489999999999999999999
Q ss_pred CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeE
Q 002591 780 QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 858 (903)
Q Consensus 780 ~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I 858 (903)
++++.++.+|...|.++.+... .++++|+.| +|++||+++.. +|+..+..|...+..+.+ .+.+|++++.|+.|
T Consensus 361 ~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 361 GKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTI 435 (537)
T ss_pred ceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEeccccccE
Confidence 9999999999999999988865 899999999 89999998764 788899988888865554 56789999999999
Q ss_pred EEEECCCCcEE-EEcc-CCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 859 ELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 859 ~vwdl~~~~~~-~~~~-h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
++||..+++++ .+.+ |...|.++++. ...+++++.||.+++||
T Consensus 436 k~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 436 KLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred EEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99999999988 5566 66889998886 46788999999999996
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=248.31 Aligned_cols=248 Identities=20% Similarity=0.288 Sum_probs=214.9
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVR 690 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~ 690 (903)
.++.++++.+|..+|..|.||||.++|++++.|..+++||+.++.+...+. +|...+.+++|.|||..+++|+.|++|.
T Consensus 258 ~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 258 HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence 578899999999999999999999999999999999999999999888875 4578899999999999999999999999
Q ss_pred EEeCCCCCceeEEeccCC-CceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceeEEEecCCCEEEEEE
Q 002591 691 VWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAA 767 (903)
Q Consensus 691 IWDl~~~~~~~~~~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~--~~~~~~v~~sp~~~~ll~~s 767 (903)
.||++. ..+..+.+-. ..|.+++..+||.+++ +.+.|..|++|+.++..++... ..++..++++.++.++++.-
T Consensus 338 ~wdlDg--n~~~~W~gvr~~~v~dlait~Dgk~vl-~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 338 MWDLDG--NILGNWEGVRDPKVHDLAITYDGKYVL-LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred EecCCc--chhhcccccccceeEEEEEcCCCcEEE-EEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEc
Confidence 999984 4455555433 5699999999999877 5557999999999987766443 45788899999999999999
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCC--eEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEe
Q 002591 768 AENVVSILDAETQACRLSLQGHTKP--IDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 843 (903)
Q Consensus 768 ~dg~I~i~D~~t~~~~~~l~~h~~~--V~sl~~sp-dg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~s 843 (903)
.+..|.+||++..+.+..+.||... |..-||-- +..++++|++| .|+||+..++ +.+.++.+|...|++++|+
T Consensus 415 ~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kll~~LsGHs~~vNcVswN 491 (519)
T KOG0293|consen 415 QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KLLAVLSGHSKTVNCVSWN 491 (519)
T ss_pred ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ceeEeecCCcceeeEEecC
Confidence 9999999999999999999998765 33445654 44699999999 9999999887 8899999999999999999
Q ss_pred CCC-CEEEEEECCCeEEEEECCC
Q 002591 844 PTY-PSLLVIGCYQSLELWNMSE 865 (903)
Q Consensus 844 p~g-~~l~t~s~dg~I~vwdl~~ 865 (903)
|.. .++|+++.||+|+||....
T Consensus 492 P~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 492 PADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCHHHhhccCCCCeEEEecCCc
Confidence 966 4678889999999998754
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-27 Score=267.72 Aligned_cols=244 Identities=22% Similarity=0.326 Sum_probs=200.3
Q ss_pred eeeEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---------------------------------------
Q 002591 615 EANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--------------------------------------- 654 (903)
Q Consensus 615 ~~~~l~-~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t--------------------------------------- 654 (903)
....+. +|.+.|+|+.||+||+|||+||.|+.|+||.+..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 334455 8999999999999999999999999999997643
Q ss_pred ---------------------CceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEE
Q 002591 655 ---------------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 713 (903)
Q Consensus 655 ---------------------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~s 713 (903)
.+++..|.+|.+.|.+|.|+.++ +|++++.|++||||++.. ..|+.+|. |.+.|+|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVTC 414 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC-cceeeEEe-cCCeeEE
Confidence 01122356899999999999875 999999999999999997 78899887 9999999
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC--C
Q 002591 714 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H 789 (903)
Q Consensus 714 l~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~--~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~--h 789 (903)
|+|+|.++++|++|+-||.||||++...+.+.-. +.-++.++|.|+|+..++|+.+|.+++|+.+..+....+.- |
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 9999998999999999999999999988876544 45689999999999999999999999999998876654321 1
Q ss_pred ------CCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecC--CCceEEEEEeCCCCEEEEEECCCeEE
Q 002591 790 ------TKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPSLLVIGCYQSLE 859 (903)
Q Consensus 790 ------~~~V~sl~~spdg~-~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~--~~~i~si~~sp~g~~l~t~s~dg~I~ 859 (903)
...|+.+.|.|... .|++.+.| .|+|||.+.. ..+..+++. ...-....|+.||++|++++.|..|+
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VY 571 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVY 571 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEE
Confidence 22799999998443 34455555 9999999765 344444432 23345678999999999999999999
Q ss_pred EEECC
Q 002591 860 LWNMS 864 (903)
Q Consensus 860 vwdl~ 864 (903)
||++.
T Consensus 572 iW~~~ 576 (712)
T KOG0283|consen 572 IWKND 576 (712)
T ss_pred EEeCC
Confidence 99973
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-26 Score=280.48 Aligned_cols=238 Identities=18% Similarity=0.251 Sum_probs=199.9
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCce
Q 002591 623 TSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYS 700 (903)
Q Consensus 623 ~~~V~~l~fsp-dg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~~~~~~ 700 (903)
...|.+++|++ ++.+||+++.||+|+|||+.+++.+..+.+|...|++++|+| ++.+|++|+.|++|+|||+++ +.+
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~ 610 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVS 610 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcE
Confidence 45799999987 478999999999999999999999999999999999999996 788999999999999999987 666
Q ss_pred eEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEee---cCceeEEEecCCCEEEEEEcCCeEEEEE
Q 002591 701 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 776 (903)
Q Consensus 701 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~-~~~~~~---~~~~~v~~sp~~~~ll~~s~dg~I~i~D 776 (903)
+..+..+ ..|.++.|++....+|++|+.||.|++||+++.+ .+..+. ..+..+.|. ++..+++++.|+.|+|||
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEe
Confidence 7777654 6799999976656678899999999999998765 344443 346677886 678999999999999999
Q ss_pred CCC------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce--------E--EEeecCCCceEE
Q 002591 777 AET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC--------V--HELSCNGNKFHS 839 (903)
Q Consensus 777 ~~t------~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~--------i--~~~~~~~~~i~s 839 (903)
++. ..++..+.+|...+.+++|++++.+|++|+.| .|++|+......... + .....+...|.+
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 985 35778899999999999999999999999999 999999865421110 0 011234556999
Q ss_pred EEEeCCCCEEEEEECCCeEEEEEC
Q 002591 840 CVFHPTYPSLLVIGCYQSLELWNM 863 (903)
Q Consensus 840 i~~sp~g~~l~t~s~dg~I~vwdl 863 (903)
++|++++..|++++.+|.|+||++
T Consensus 769 v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999996
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=259.80 Aligned_cols=247 Identities=15% Similarity=0.190 Sum_probs=200.1
Q ss_pred EeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCc-------eeEEeccCCCceE
Q 002591 641 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGY-------SLRTFMGHSASVM 712 (903)
Q Consensus 641 gs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IWDl~~~~~-------~~~~~~~h~~~V~ 712 (903)
|+.++.|+||+......+..+.+|...|.+++|+|+ +.+|++|+.|++|+|||+.+.+. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667889999998887888999999999999999997 78999999999999999976332 3456789999999
Q ss_pred EEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC
Q 002591 713 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 790 (903)
Q Consensus 713 sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~--~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~ 790 (903)
+++|+|++..+|++++.|++|+|||+++++.+..+. ..+.++.|++++..+++++.|+.|+|||+++++.+..+.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 999999988888899999999999999988665553 457889999999999999999999999999999999999998
Q ss_pred CCeEEE-----EEcCCCCEEEEEeCC-----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEE
Q 002591 791 KPIDSV-----CWDPSGELLASVSED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 860 (903)
Q Consensus 791 ~~V~sl-----~~spdg~~lasgs~d-----~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~v 860 (903)
+.+.+. .|++++.+|++++.+ .|+|||++..........+..+...+......+++.++++|+.|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 765433 345788888887655 5999999965433333334333444444445566888999999999999
Q ss_pred EECCCCcEEEE--ccCCCCEEEEEEecCC
Q 002591 861 WNMSENKTMTL--TAHEGLIAALAVSTET 887 (903)
Q Consensus 861 wdl~~~~~~~~--~~h~~~V~sl~~spdg 887 (903)
|++..+....+ ..+..++.+++|.|..
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEcccc
Confidence 99988765533 2366788999999864
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-27 Score=236.79 Aligned_cols=287 Identities=17% Similarity=0.323 Sum_probs=244.0
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I 691 (903)
.+..++.+.+|.+.|+.++....-..+.+++.|.+.+||.+++++++.++.+|.+.|++|+|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 56778889999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EeC------CC-----------------------------C----CceeEEeccCCCceEEEEecCCCCeEEEEEeCCCc
Q 002591 692 WDA------DN-----------------------------P----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 732 (903)
Q Consensus 692 WDl------~~-----------------------------~----~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~ 732 (903)
|.. .. . ..++..+++|...|.+..|...+..++ +++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v-TaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV-TASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceee-eeecccc
Confidence 952 00 0 023567889999999999998777555 9999999
Q ss_pred EEEEEcCCCeeeEEeecC---ceeEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 002591 733 IRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASV 808 (903)
Q Consensus 733 I~iwDi~t~~~~~~~~~~---~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~lasg 808 (903)
..+||+++++.+..+.++ .+.++-+|....+++++.|.+.++||.+.. ..+..|.+|...|+++.|.-+ ..+++|
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-Cceeec
Confidence 999999999999988775 455677888888888999999999999965 567789999999999999874 567889
Q ss_pred eCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEEE-----EccCCCCEEEEE
Q 002591 809 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-----LTAHEGLIAALA 882 (903)
Q Consensus 809 s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~-----~~~h~~~V~sl~ 882 (903)
++| +|+|||+++.. ..+..+.. ...++.++.+..++.|+.-..+..|++||++..++.. ..+|...|+|++
T Consensus 375 SDDrTvKvWdLrNMR--splATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR--SPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeecccc--Ccceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 999 99999998763 23333333 6788899999888888888888899999999887763 347999999999
Q ss_pred EecCCC--EEEEEecCCcEEEcC
Q 002591 883 VSTETG--YVASASHDKFVKLWK 903 (903)
Q Consensus 883 ~spdg~--~LaSgs~DG~I~IWd 903 (903)
|..+-. -|++|+.|..+.-|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 976543 488999999988885
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-27 Score=264.46 Aligned_cols=242 Identities=25% Similarity=0.474 Sum_probs=220.6
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcC
Q 002591 660 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 739 (903)
Q Consensus 660 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~ 739 (903)
.|+..+..|..++|+|...+++++-..|.|.+||.+- +.++..|..|.++|..++|||..+ ++++|++|-.|++|+..
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM-~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM-GTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhh-hhHHhhhhccCCccceeeecCCCC-eEEecCCccEEEEEecc
Confidence 4556678899999999999999999999999999987 788999999999999999999977 67799999999999999
Q ss_pred CCeeeEEeecC---ceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEE
Q 002591 740 NGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV 815 (903)
Q Consensus 740 t~~~~~~~~~~---~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~i 815 (903)
+.+|+.++.++ +..+.|++.-.++++++.|-+|+||+..+.+++..+.+|...|.|..|+|...+|++++-| +|||
T Consensus 82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 99999998876 5667799999999999999999999999999999999999999999999999999999999 9999
Q ss_pred EECCCCC--------------------------CcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE
Q 002591 816 WTVGSGS--------------------------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 869 (903)
Q Consensus 816 wdl~s~~--------------------------~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~ 869 (903)
||+.... .....+.+.+|+..|+-++|+|.-..|++|+.|+.|++|.++..+..
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence 9985321 11123567889999999999999999999999999999999887765
Q ss_pred ---EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 870 ---TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 870 ---~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+..+|.+.|.++.|+|.-.+|+|.|+|++|+|||
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 6789999999999999999999999999999997
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=257.01 Aligned_cols=263 Identities=15% Similarity=0.230 Sum_probs=206.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-------------EEeccCCCCeEEEEECC-CCCEEEEEeCCC
Q 002591 622 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-------------TNLEEHSSLITDVRFSP-SMPRLATSSFDK 687 (903)
Q Consensus 622 H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~-------------~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg 687 (903)
|-..|....+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++.+|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3345666666677666666666666666764432221 24678999999999999 888999999999
Q ss_pred cEEEEeCCCCC------ceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceeEEEec
Q 002591 688 TVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQP 758 (903)
Q Consensus 688 ~I~IWDl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~~~v~~sp 758 (903)
+|+|||+.+.+ ..+..+.+|...|.+++|+|++..+|++++.|++|+|||+++++.+..+.. .+.+++|++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 99999997632 356788999999999999998777888999999999999999988877754 477899999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC-eEEEEEcCCCCEEEEEe----CC-eEEEEECCCCCCcceEEEeec
Q 002591 759 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVS----ED-SVRVWTVGSGSEGECVHELSC 832 (903)
Q Consensus 759 ~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~-V~sl~~spdg~~lasgs----~d-~I~iwdl~s~~~~~~i~~~~~ 832 (903)
++..+++++.|+.|+|||+++++.+..+.+|... +..+.|.+++.+|++++ .| .|++||+++... .+.....
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~ 256 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDL 256 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEecc
Confidence 9999999999999999999999999999988765 45678999888777654 24 899999987543 2322222
Q ss_pred -CCCceEEEEEeCCCCEEEEEE-CCCeEEEEECCCCcEEEE--ccCCCCEEEEEEecC
Q 002591 833 -NGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTL--TAHEGLIAALAVSTE 886 (903)
Q Consensus 833 -~~~~i~si~~sp~g~~l~t~s-~dg~I~vwdl~~~~~~~~--~~h~~~V~sl~~spd 886 (903)
....+....|++++.+|++++ .|+.|++||+.+++.+.. ..+...+.+++|.|.
T Consensus 257 d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 257 DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 234556677899999999888 599999999999887732 235567888888774
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-26 Score=229.40 Aligned_cols=270 Identities=16% Similarity=0.278 Sum_probs=222.1
Q ss_pred cCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-Ccee-EEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 002591 621 ASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSK-TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 697 (903)
Q Consensus 621 ~H~~~V~~l~fsp-dg~~Latgs~Dg~V~vWd~~t-~~~~-~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~ 697 (903)
.-.+.|.+|+||| ...+|++|+.|++||+|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S- 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS- 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC-
Confidence 4567899999999 555777999999999999985 3333 44567999999999999999999999999999999998
Q ss_pred CceeEEeccCCCceEEEEecCCCC-eEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEE
Q 002591 698 GYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 776 (903)
Q Consensus 698 ~~~~~~~~~h~~~V~sl~fsp~~~-~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D 776 (903)
+ -+..+..|..+|.++.|.+... .+|+||+.|.+|++||.+....+.++.-+..+.+.......++++..+..|.+|+
T Consensus 104 ~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 104 G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN 182 (347)
T ss_pred C-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence 3 5677788999999999987644 3778999999999999999999988888877777777788899999999999999
Q ss_pred CCCCeEEEE-ec-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC---------CceEEEEEeC
Q 002591 777 AETQACRLS-LQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---------NKFHSCVFHP 844 (903)
Q Consensus 777 ~~t~~~~~~-l~-~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~---------~~i~si~~sp 844 (903)
++.+..... +. .-.-.++||+...|....+.|+-+ .+.|..+..+.. +.-..+++|. ..|.+++|+|
T Consensus 183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred cCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeec
Confidence 987643322 11 123458899999888877888777 888888876533 3344455554 2478899999
Q ss_pred CCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEE
Q 002591 845 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 893 (903)
Q Consensus 845 ~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSg 893 (903)
....|++++.||++.+||-.....+ ....|..+|++++|+.+|.++|-+
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 9999999999999999999877666 668899999999999999988765
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-26 Score=264.21 Aligned_cols=277 Identities=20% Similarity=0.337 Sum_probs=233.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCC------------CceeEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002591 622 STSKVICCHFSSDGKLLATGG--HDKKAVLWHTDT------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 687 (903)
Q Consensus 622 H~~~V~~l~fspdg~~Latgs--~Dg~V~vWd~~t------------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 687 (903)
+...|.+|+.+|||..+|||+ .|+.++||+.+. .+.+.+...|.+.|+|++|++||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 455699999999999999999 999999998642 234456678999999999999999999999999
Q ss_pred cEEEEeCCC------C-----------CceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC
Q 002591 688 TVRVWDADN------P-----------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 750 (903)
Q Consensus 688 ~I~IWDl~~------~-----------~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~ 750 (903)
.|.||+... . -+++..+.+|...|.+++|+|++. ++++++.|++|.|||.++.+++++++++
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeeecc
Confidence 999999872 1 135778889999999999999855 7779999999999999999988888764
Q ss_pred ---ceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC------CCeEEEEEcCCCCEEEEEeC----C-eEEEE
Q 002591 751 ---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT------KPIDSVCWDPSGELLASVSE----D-SVRVW 816 (903)
Q Consensus 751 ---~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~------~~V~sl~~spdg~~lasgs~----d-~I~iw 816 (903)
+..+.|.|-|.+|++-+.|++|+||++.+..+.+.+..+. ..+..+.|+|||.+|++... . ++.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 6778999999999999999999999988877777766543 34788999999999998642 2 78888
Q ss_pred ECCCCCCcceEEEeecCCCceEEEEEeCC-----CC------------EEEEEECCCeEEEEECCCCcEEEE--ccCCCC
Q 002591 817 TVGSGSEGECVHELSCNGNKFHSCVFHPT-----YP------------SLLVIGCYQSLELWNMSENKTMTL--TAHEGL 877 (903)
Q Consensus 817 dl~s~~~~~~i~~~~~~~~~i~si~~sp~-----g~------------~l~t~s~dg~I~vwdl~~~~~~~~--~~h~~~ 877 (903)
+-.+. ++-..+.+|..++.++.|+|. .. .+++|+.|++|.||.....+.+.+ .-....
T Consensus 251 eR~tW---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~S 327 (942)
T KOG0973|consen 251 ERGTW---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKS 327 (942)
T ss_pred ecCCc---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCc
Confidence 87554 667788899999999999882 11 577889999999999977777633 335678
Q ss_pred EEEEEEecCCCEEEEEecCCcEEEc
Q 002591 878 IAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 878 V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
|.+++|+|||-.|+.+|.||+|.++
T Consensus 328 I~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 328 IVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred eeeeeEcCCCCeEEEEecCCeEEEE
Confidence 9999999999999999999999875
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-26 Score=252.74 Aligned_cols=265 Identities=22% Similarity=0.430 Sum_probs=227.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEecc-C
Q 002591 629 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-H 707 (903)
Q Consensus 629 l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~-h 707 (903)
++|+ ....||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+ .+.++.+.+ |
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-~k~~~~~~~~h 259 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-QKKTRTLRGSH 259 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh-ccccccccCCc
Confidence 6677 344777775 45799999999887776666689999999999999999999999999999987 666778887 9
Q ss_pred CCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-ee---cCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 002591 708 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR 783 (903)
Q Consensus 708 ~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~-~~---~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~ 783 (903)
...|.+++|. ..++.+|+.|+.|.++|++....... +. ..+..+.|++++.+++.++.|+.+.|||.....++
T Consensus 260 ~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 260 ASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 9999999998 34777999999999999998764433 33 34666789999999999999999999999999999
Q ss_pred EEecCCCCCeEEEEEcCC-CCEEEEEe--CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEC--CCe
Q 002591 784 LSLQGHTKPIDSVCWDPS-GELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC--YQS 857 (903)
Q Consensus 784 ~~l~~h~~~V~sl~~spd-g~~lasgs--~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~--dg~ 857 (903)
..+..|...|.+++|+|- ..+||+|+ .| .|++||+.++.. +..+.. ...|..+.|++..+.|+++.. ++.
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~---i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR---IDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE---eccccc-CCceeeEEEcCCCCEEEEecCCCCCc
Confidence 999999999999999994 45888875 44 899999998744 333332 788999999999988888765 468
Q ss_pred EEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 858 LELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 858 I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
|.||++.+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 999999998777 8889999999999999999999999999999996
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=232.48 Aligned_cols=252 Identities=19% Similarity=0.264 Sum_probs=223.8
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I 691 (903)
+-.-+.+|.+|.+.|+..++..+-.+.|+++.|-+.+|||.-++..+..| .|..-|.+++|+.|.++|++|+.++.+||
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrv 126 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRV 126 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhh
Confidence 44457789999999999999999999999999999999999999999988 48888999999999999999999999999
Q ss_pred EeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceeEEEecCCCEEEEEEcC
Q 002591 692 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE 769 (903)
Q Consensus 692 WDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~--~~~~~v~~sp~~~~ll~~s~d 769 (903)
||++.+......+.+|++.|..+.|......+| ++.+|++||+||.++++.+..+. .++.++.+++++ .+++.+..
T Consensus 127 fdln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG-~ilTia~g 204 (334)
T KOG0278|consen 127 FDLNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG-RILTIAYG 204 (334)
T ss_pred hhccCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCC-CEEEEecC
Confidence 999998888999999999999999998766665 77899999999999999887664 678889999885 45666777
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 002591 770 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 848 (903)
Q Consensus 770 g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~ 848 (903)
+.|.+||..+..++..++ -...|.+...+|+..++++|++| .++.||+.++.+..+. .++|.++|.++.|+|+|..
T Consensus 205 ssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 205 SSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGEL 281 (334)
T ss_pred ceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCce
Confidence 899999999999888776 56779999999999999999999 9999999998554442 4788999999999999999
Q ss_pred EEEEECCCeEEEEECCCCcEE
Q 002591 849 LLVIGCYQSLELWNMSENKTM 869 (903)
Q Consensus 849 l~t~s~dg~I~vwdl~~~~~~ 869 (903)
.++|+.||+|+||-...++..
T Consensus 282 yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eeccCCCceEEEEEecCCCch
Confidence 999999999999998776544
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-26 Score=222.31 Aligned_cols=254 Identities=22% Similarity=0.325 Sum_probs=218.8
Q ss_pred CCcccccccCcceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEE
Q 002591 601 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 680 (903)
Q Consensus 601 ~~~~~d~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~L 680 (903)
..+...+|+...-.+++++.+|...|.+++.+.|...|++|+.|+.|.+||+++|+.++.+++|.+.|+.++|+.+...+
T Consensus 37 sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv 116 (307)
T KOG0316|consen 37 SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVV 116 (307)
T ss_pred CCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEE
Confidence 33444444444567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCC-CceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-ecCceeEEEec
Q 002591 681 ATSSFDKTVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KGGTAQMRFQP 758 (903)
Q Consensus 681 asgs~Dg~I~IWDl~~~-~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~-~~~~~~v~~sp 758 (903)
++|+.|.+|++||.++. .+++..+....+.|.+|... ++.|++|+.||++|.||++.|.....+ ..++++++|++
T Consensus 117 ~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~ 193 (307)
T KOG0316|consen 117 ASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSK 193 (307)
T ss_pred EeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecC
Confidence 99999999999999864 35678888888999999997 336779999999999999999877654 45789999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCe--EEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCC
Q 002591 759 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI--DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 835 (903)
Q Consensus 759 ~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V--~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~ 835 (903)
+++..++++.|++|++.|-.+|+.+..+++|...- ..+++......+++|++| .|++||+... ..+..+..+..
T Consensus 194 d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~sk~~~~~~ 270 (307)
T KOG0316|consen 194 DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQISKLSVVST 270 (307)
T ss_pred CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeeeeeccCCc
Confidence 99999999999999999999999999999997653 345677777899999999 9999999876 56666766666
Q ss_pred c-eEEEEEeCCCCEEEEEECCCeEEEE
Q 002591 836 K-FHSCVFHPTYPSLLVIGCYQSLELW 861 (903)
Q Consensus 836 ~-i~si~~sp~g~~l~t~s~dg~I~vw 861 (903)
. +.++.++|.-..|+++...+ +.+|
T Consensus 271 v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 271 VIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred eeEEeeecccCccceeEecCCc-eece
Confidence 6 89999999988888876554 4444
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-26 Score=235.23 Aligned_cols=259 Identities=20% Similarity=0.340 Sum_probs=218.9
Q ss_pred CcCCCCcccccccCcceeeeeEeecCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCCce----eEEeccCCCCeE
Q 002591 597 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK---LLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLIT 669 (903)
Q Consensus 597 ~~~~~~~~~d~~~~~~~~~~~~l~~H~~~V~~l~fspdg~---~Latgs~Dg~V~vWd~~t~~~----~~~l~~h~~~V~ 669 (903)
..|+..|+|+. ..+....+.+|.++|.+++|..... .|++++.|.++++|.++.++. +....+|...|-
T Consensus 122 sYDg~~riWd~----~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~ 197 (423)
T KOG0313|consen 122 SYDGTSRIWDL----KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVD 197 (423)
T ss_pred ecCCeeEEEec----CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccccee
Confidence 34566677765 5578899999999999988864333 699999999999999886543 334459999999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCC------------------------CceeEEeccCCCceEEEEecCCCCeEEE
Q 002591 670 DVRFSPSMPRLATSSFDKTVRVWDADNP------------------------GYSLRTFMGHSASVMSLDFHPNKDDLIC 725 (903)
Q Consensus 670 ~l~fspdg~~Lasgs~Dg~I~IWDl~~~------------------------~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 725 (903)
+|+..+++..+++|+.|.+|.||+..+. +.++.++.+|..+|.++.|++ ...++
T Consensus 198 sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~y 275 (423)
T KOG0313|consen 198 SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIY 275 (423)
T ss_pred EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceE
Confidence 9999999999999999999999993210 134667889999999999998 34677
Q ss_pred EEeCCCcEEEEEcCCCeeeEEeec--CceeEEEecCCCEEEEEEcCCeEEEEECCCC---eEEEEecCCCCCeEEEEEcC
Q 002591 726 SCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDP 800 (903)
Q Consensus 726 sgs~Dg~I~iwDi~t~~~~~~~~~--~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~---~~~~~l~~h~~~V~sl~~sp 800 (903)
+++.|.+|+.||++++.++..+.+ ...++.+++....+++++.|..|++||.+++ .....+.+|...|.++.|+|
T Consensus 276 S~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp 355 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP 355 (423)
T ss_pred eecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCC
Confidence 999999999999999998877765 4678889999999999999999999999986 35667889999999999999
Q ss_pred CCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002591 801 SGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 801 dg~-~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~ 864 (903)
... .|++++.| ++++||+|+.. ..+..+..|...|.++.|. ++..|++|+.|++|+|+...
T Consensus 356 ~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 356 TNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 666 78899999 99999999863 4788889999999999997 45679999999999999753
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-24 Score=208.37 Aligned_cols=287 Identities=21% Similarity=0.296 Sum_probs=234.6
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------C---------ceeEEeccCCCCeEEEEECCC
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------L---------KSKTNLEEHSSLITDVRFSPS 676 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t------~---------~~~~~l~~h~~~V~~l~fspd 676 (903)
.|..+..++ .+..|.+++|+|.|.+.|+|+..++++|.-... + ...+.-+.|.+.|.|.+|+|+
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 455555554 567899999999999999999999998874321 1 111233568999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCc----eeEEeccCCCceEEEEecCC---CCeEEEEEe-CCCcEEEEEcCCCeeeEEee
Q 002591 677 MPRLATSSFDKTVRVWDADNPGY----SLRTFMGHSASVMSLDFHPN---KDDLICSCD-GDGEIRYWSINNGSCTRVFK 748 (903)
Q Consensus 677 g~~Lasgs~Dg~I~IWDl~~~~~----~~~~~~~h~~~V~sl~fsp~---~~~ll~sgs-~Dg~I~iwDi~t~~~~~~~~ 748 (903)
|.+|++|+.|++|++.-++.... .-..|.-|.+.|..++|..+ +..++++++ .|..|++-|..++.....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99999999999999987764221 22456779999999999654 445666654 47778888888888888887
Q ss_pred cCceeEE--EecCCCEEEEEEcCCeEEEEECCCCeEEEEecC--C-----CCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002591 749 GGTAQMR--FQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H-----TKPIDSVCWDPSGELLASVSED-SVRVWTV 818 (903)
Q Consensus 749 ~~~~~v~--~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~--h-----~~~V~sl~~spdg~~lasgs~d-~I~iwdl 818 (903)
++...+- ++.++-.+++++.|.+|++||++-..++.++.. | .+.|.+++..|.|++|++|-.| ...+||+
T Consensus 181 ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 181 GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 7655432 455666788888899999999999999887753 2 3569999999999999999999 9999999
Q ss_pred CCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCc-----EEEEccCCCCEEEEEEecCCCEEEEE
Q 002591 819 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-----TMTLTAHEGLIAALAVSTETGYVASA 893 (903)
Q Consensus 819 ~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~-----~~~~~~h~~~V~sl~~spdg~~LaSg 893 (903)
+.+ ..+..+..|...|.++.|+|...|+++++.|..|++-|+...- .+.+..|.+.+..+.|+|..--|++.
T Consensus 261 rg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 261 RGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred eCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 987 7888899999999999999999999999999999999987542 33667899999999999999889999
Q ss_pred ecCCcEEEc
Q 002591 894 SHDKFVKLW 902 (903)
Q Consensus 894 s~DG~I~IW 902 (903)
+.|.++.+|
T Consensus 338 sadkt~tlw 346 (350)
T KOG0641|consen 338 SADKTATLW 346 (350)
T ss_pred cCcceEEEe
Confidence 999999999
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-26 Score=224.67 Aligned_cols=248 Identities=21% Similarity=0.336 Sum_probs=205.9
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECC-CCceeEEeccCCCCeEEEEECCCC-CEEEEEeCCCc
Q 002591 612 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKT 688 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~V~vWd~~-t~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~ 688 (903)
.+.+...+. -.+.+..++|+++. ..+++++.||+++|||+. ...++..+++|...|.++.|++.. ..+++++.|++
T Consensus 50 gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~T 128 (311)
T KOG0277|consen 50 GIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGT 128 (311)
T ss_pred CeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCc
Confidence 444555554 45679999999865 588889999999999965 557889999999999999999864 46788899999
Q ss_pred EEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceeEEEecCCC-EEE
Q 002591 689 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLG-RYL 764 (903)
Q Consensus 689 I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~---~~~~~v~~sp~~~-~ll 764 (903)
|++|+... ...+.++.+|...|+...|+|....++++++.|+++++||++..-....++ ..+.++.|+..+. .++
T Consensus 129 iKLW~~~r-~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~ 207 (311)
T KOG0277|consen 129 IKLWDPNR-PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLA 207 (311)
T ss_pred eEeecCCC-CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEE
Confidence 99999987 677899999999999999999999999999999999999998643322243 3566777887765 456
Q ss_pred EEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEE
Q 002591 765 AAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 841 (903)
Q Consensus 765 ~~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~-~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~ 841 (903)
+++.|+.|++||++.. .++.++.+|.-.|+.|+|+|... +|++++.| +++|||..... .++.....|..-+..+.
T Consensus 208 Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~D 285 (311)
T KOG0277|consen 208 TGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLD 285 (311)
T ss_pred ecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEeccc
Confidence 6677999999999986 57888999999999999999655 99999999 99999997542 45566667777888888
Q ss_pred EeC-CCCEEEEEECCCeEEEEEC
Q 002591 842 FHP-TYPSLLVIGCYQSLELWNM 863 (903)
Q Consensus 842 ~sp-~g~~l~t~s~dg~I~vwdl 863 (903)
|++ +...++.++.|+.++||+-
T Consensus 286 ws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 286 WSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccccCceeeecccccceeeecc
Confidence 887 5678999999999999984
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=256.48 Aligned_cols=250 Identities=24% Similarity=0.436 Sum_probs=217.8
Q ss_pred cccCcceeeeeE-eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeC
Q 002591 607 VSQGFSFKEANS-VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 685 (903)
Q Consensus 607 ~~~~~~~~~~~~-l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~ 685 (903)
.++......+.. +.+|.+.|++++|..-+.+|++|+.|.+++|||+.++.+..++.+|...|.++...+. ++++|+.
T Consensus 232 ~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~--~~~sgs~ 309 (537)
T KOG0274|consen 232 LWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF--LLVSGSR 309 (537)
T ss_pred EeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc--eEeeccC
Confidence 333345566666 9999999999999987789999999999999999999999999999999999987654 7888999
Q ss_pred CCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEE-EecCC-CEE
Q 002591 686 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHL-GRY 763 (903)
Q Consensus 686 Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~-~sp~~-~~l 763 (903)
|.+|++|++.+ +.++.++.+|.+.|.++.++ ..++++|+.|++|++||+.+++|++++.++...+. +..+. ..+
T Consensus 310 D~tVkVW~v~n-~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~ 385 (537)
T KOG0274|consen 310 DNTVKVWDVTN-GACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRL 385 (537)
T ss_pred CceEEEEeccC-cceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceE
Confidence 99999999997 88899999999999999998 33677999999999999999999999998765443 24444 899
Q ss_pred EEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec-CCCceEEE
Q 002591 764 LAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSC 840 (903)
Q Consensus 764 l~~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~-~~~~i~si 840 (903)
+.++.|+.|++||+++. +++.++.+|...|..+.+. +++|++++.| +|++||..++ .+++.+.. +...|..+
T Consensus 386 ~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l 460 (537)
T KOG0274|consen 386 LSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSSADGTIKLWDAEEG---ECLRTLEGRHVGGVSAL 460 (537)
T ss_pred EeeeeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEeccccccEEEeecccC---ceeeeeccCCcccEEEe
Confidence 99999999999999999 9999999999999776654 7899999999 9999999877 67777777 56777777
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCcEE
Q 002591 841 VFHPTYPSLLVIGCYQSLELWNMSENKTM 869 (903)
Q Consensus 841 ~~sp~g~~l~t~s~dg~I~vwdl~~~~~~ 869 (903)
++. ...+++++.++.+++||+++++..
T Consensus 461 ~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 461 ALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred ecC--cceEEEEecCCeeEEEecccCchh
Confidence 775 567999999999999999999877
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=225.07 Aligned_cols=263 Identities=18% Similarity=0.308 Sum_probs=220.4
Q ss_pred cceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCC--EEEEEeCCCc
Q 002591 611 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKT 688 (903)
Q Consensus 611 ~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~ 688 (903)
+++.+...+.+|.+.|+|++.+ +.++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|+.||.
T Consensus 31 ~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 31 PTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred eeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCc
Confidence 3778888999999999999986 78999999999999999999999999999999999999998866 8999999999
Q ss_pred EEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceeEEEecCCCEEEEE
Q 002591 689 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAA 766 (903)
Q Consensus 689 I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~--~~~~~~v~~sp~~~~ll~~ 766 (903)
|.+|+... -.++.++++|...|+.|+.+|.++ +.++.+.|+.+++||+-+|+.-.+. +.....+.|+|.|.+|+++
T Consensus 109 i~iw~~~~-W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 109 IIIWRVGS-WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS 186 (362)
T ss_pred EEEEEcCC-eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEE
Confidence 99999987 688999999999999999999976 6668888999999999998855444 3455669999999988877
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEE--e
Q 002591 767 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF--H 843 (903)
Q Consensus 767 s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~--s 843 (903)
.. +.|-||.+++.+....+. ....+.|+.|.. +.+|++|.++ .|++||..+. .+...+..|.+.|..+.+ .
T Consensus 187 ~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 187 GR-NKIDIYQLDNASVFREIE-NPKRILCATFLD-GSELLVGGDNEWISLKDTDSD---TPLTEFLAHENRVKDIASYTN 260 (362)
T ss_pred ec-cEEEEEecccHhHhhhhh-ccccceeeeecC-CceEEEecCCceEEEeccCCC---ccceeeecchhheeeeEEEec
Confidence 65 568899888877666555 335677777775 5567777777 9999999874 788999999999999884 4
Q ss_pred CCCCEEEEEECCCeEEEEECCCC-----cEEEEccCCCCEEEEEE
Q 002591 844 PTYPSLLVIGCYQSLELWNMSEN-----KTMTLTAHEGLIAALAV 883 (903)
Q Consensus 844 p~g~~l~t~s~dg~I~vwdl~~~-----~~~~~~~h~~~V~sl~~ 883 (903)
|++.+|++++.||.|+|||++.. +.+........++|+..
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred CCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeee
Confidence 57889999999999999999876 33333344566777655
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-25 Score=256.57 Aligned_cols=250 Identities=23% Similarity=0.395 Sum_probs=215.0
Q ss_pred eeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------CceeEEeccCCCCeEEEEECC
Q 002591 614 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSP 675 (903)
Q Consensus 614 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t------------------~~~~~~l~~h~~~V~~l~fsp 675 (903)
+.+.+...|.+.|+|+.|++||.+||+|++|+.|.||+... .+.+..+.+|...|.+++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 45667788999999999999999999999999999998662 246778899999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec------
Q 002591 676 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------ 749 (903)
Q Consensus 676 dg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~------ 749 (903)
++.+||+++.|++|.||+..+. +.++++.+|.+.|..+.|.|-|. +||+-+.|++|+||++.+..+.+.+..
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred CccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 9999999999999999999994 88999999999999999999987 567999999999999877666665543
Q ss_pred ---CceeEEEecCCCEEEEEEc----CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC-------------CC----EE
Q 002591 750 ---GTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-------------GE----LL 805 (903)
Q Consensus 750 ---~~~~v~~sp~~~~ll~~s~----dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd-------------g~----~l 805 (903)
....+.|+|+|.+|++... ...+.|++-.+.+.-..+-+|..++.++.|+|. .+ .+
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 3456889999999998754 348999999999999999999999999999981 11 67
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCc
Q 002591 806 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 867 (903)
Q Consensus 806 asgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~ 867 (903)
|+|+.| +|.||........-.++.+. ...|.+++|+|||..|++++.||+|.++.+.+++
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi~~lf--~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVIHNLF--NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEecCCccEEEEecCCCCchhhhhhhh--cCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 888999 99999986654433334333 6689999999999999999999999999998754
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-26 Score=250.30 Aligned_cols=268 Identities=22% Similarity=0.383 Sum_probs=231.9
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCc------eeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCC-ceeEEec
Q 002591 633 SDGKLLATGGHDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFM 705 (903)
Q Consensus 633 pdg~~Latgs~Dg~V~vWd~~t~~------~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~-~~~~~~~ 705 (903)
|.+++|+|||.||.|++|++.... ....++.|.+.|+++....+++.|+++|.|-+|++|+..... .++.++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 466789999999999999976322 366788999999999999999999999999999999998754 7888999
Q ss_pred cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe--eeEEe------------ecCceeEEEecCCCEEEEEEcCCe
Q 002591 706 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVF------------KGGTAQMRFQPHLGRYLAAAAENV 771 (903)
Q Consensus 706 ~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~--~~~~~------------~~~~~~v~~sp~~~~ll~~s~dg~ 771 (903)
.|.+.|.|+++......++|+|+-|+.|++||++++. .+..+ +..+.+++..+.+..++.|+.++.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 9999999999954556789999999999999999873 22222 234566778888888889999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 002591 772 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 850 (903)
Q Consensus 772 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~ 850 (903)
+++||.++.+.+..+.+|+..|.++..++||..+++++.| +|++||+... +|+.++..|...|.++..+|+-.+++
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCCCcceEE
Confidence 9999999999999999999999999999999999999999 9999999765 89999999999999999999999999
Q ss_pred EEECCCeEEEEECCC-CcEEEEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 851 VIGCYQSLELWNMSE-NKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 851 t~s~dg~I~vwdl~~-~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+|+.|+.|+.=|+++ .+...+...+.+|..+..+.+..-+-+++.|+.|+-|.
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 999999999999998 44446667777888888876555557778899998884
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-25 Score=236.00 Aligned_cols=237 Identities=22% Similarity=0.285 Sum_probs=204.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCcee
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSL 701 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~~~~~~~ 701 (903)
.+.|++++|-.||++||+|...|.|+|||+++...++.+.+|..+|..+.|+|.+. .|++|++|+.+++||+.+ ....
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-a~v~ 146 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-AYVQ 146 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-cEEE
Confidence 34699999999999999999999999999877778889999999999999999755 678888899999999998 5556
Q ss_pred EEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCC-eeeEEee--cCceeEEEecCCCEEEEEEcCCeEEEEECC
Q 002591 702 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAE 778 (903)
Q Consensus 702 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~-~~~~~~~--~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~ 778 (903)
..+.+|++.|.|.+|+|-.+++++||+.||.|++||++.. ..+..+. .++..+.+.|.+..++++ ..+.|++||+.
T Consensus 147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasA-gGn~vkVWDl~ 225 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASA-GGNSVKVWDLT 225 (487)
T ss_pred EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEc-CCCeEEEEEec
Confidence 7899999999999999999999999999999999999987 5555554 367888999987766654 45789999999
Q ss_pred CC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCC
Q 002591 779 TQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 856 (903)
Q Consensus 779 t~-~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg 856 (903)
+| +.+..+..|...|+|+++..++..|++++-| .|++||+.+. +.++.+.- .++|.+|+.+|++..+++|..+|
T Consensus 226 ~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 226 TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred CCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeeec-ccceeeEEecCCCceEEEecccc
Confidence 66 5555566699999999999999999999999 9999997654 56666554 78999999999999999999999
Q ss_pred eEEEEECCC
Q 002591 857 SLELWNMSE 865 (903)
Q Consensus 857 ~I~vwdl~~ 865 (903)
.+.+-+...
T Consensus 302 lv~~rr~~~ 310 (487)
T KOG0310|consen 302 LVSIRRREV 310 (487)
T ss_pred eeeeehhhc
Confidence 887765433
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=221.31 Aligned_cols=238 Identities=23% Similarity=0.392 Sum_probs=208.8
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCcee--EEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEE
Q 002591 659 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 736 (903)
Q Consensus 659 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~--~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iw 736 (903)
+.+.+|...|.+|+|+.+|.+|++|+.|+++.+|+++.. ... ....+|.+.|-.++|+|....++++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 556789999999999999999999999999999999863 222 34568999999999999999999999999999999
Q ss_pred EcCCCeeeEEee--cCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEE-EEEeCCeE
Q 002591 737 SINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL-ASVSEDSV 813 (903)
Q Consensus 737 Di~t~~~~~~~~--~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l-asgs~d~I 813 (903)
|++.++|+.... ++...+.|+|++++++++..|..|.++|.++.+.+...+ ....+..++|+.++++| ++.+.++|
T Consensus 93 d~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred EeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 999999988765 456678999999999999999999999999998877655 55678889999877754 45555688
Q ss_pred EEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEE
Q 002591 814 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVAS 892 (903)
Q Consensus 814 ~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaS 892 (903)
.|..... .+.+..+..|.....+|.|+|+|++|++|+.|-.+.+||+.+--++ .+..++-+|+.|.|+.||++||+
T Consensus 172 ~ILsyps---Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lAS 248 (313)
T KOG1407|consen 172 EILSYPS---LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLAS 248 (313)
T ss_pred EEEeccc---cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeec
Confidence 8888764 4788889999999999999999999999999999999999988777 67789999999999999999999
Q ss_pred EecCCcEEE
Q 002591 893 ASHDKFVKL 901 (903)
Q Consensus 893 gs~DG~I~I 901 (903)
||+|..|-|
T Consensus 249 aSEDh~IDI 257 (313)
T KOG1407|consen 249 ASEDHFIDI 257 (313)
T ss_pred cCccceEEe
Confidence 999998865
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-25 Score=241.83 Aligned_cols=347 Identities=14% Similarity=0.197 Sum_probs=263.8
Q ss_pred cCCCeeeeCCcchhhhhhccccccC-------------------CCCCceEEeeecCCC----CCcCCCCcccccccCcc
Q 002591 556 SPSNQLWDDKDLELRADMDRLVEDG-------------------SLDDNVESFLSHDDT----DPRDAGGRGMDVSQGFS 612 (903)
Q Consensus 556 ~~~~~lWd~~~~~~~~~~~~~~~~g-------------------s~d~~v~~~~~~d~~----~~~~~~~~~~d~~~~~~ 612 (903)
.+.++|++.++.+...++.+-.+-| -+.+.|...+.+... .-.|-..-+||+.+...
T Consensus 279 ~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~k 358 (1080)
T KOG1408|consen 279 KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNK 358 (1080)
T ss_pred cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccc
Confidence 5566888888877766665533322 122222222221111 01233456788887766
Q ss_pred eeeeeEeecCCCCeEEEEEcCC-----------CCEEEEEeCCCcEEEEECCCC---ceeEE------------------
Q 002591 613 FKEANSVRASTSKVICCHFSSD-----------GKLLATGGHDKKAVLWHTDTL---KSKTN------------------ 660 (903)
Q Consensus 613 ~~~~~~l~~H~~~V~~l~fspd-----------g~~Latgs~Dg~V~vWd~~t~---~~~~~------------------ 660 (903)
......+--|...|++|.--|. ...++|++.|++|+|||++.+ ...+.
T Consensus 359 vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q 438 (1080)
T KOG1408|consen 359 VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ 438 (1080)
T ss_pred ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh
Confidence 6777777789999999887651 126889999999999998742 11110
Q ss_pred ----------------eccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCC--CCe
Q 002591 661 ----------------LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--KDD 722 (903)
Q Consensus 661 ----------------l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~--~~~ 722 (903)
.-+....|.+|+.+|++.+||+|..-|+|+|||+.+ ......+..|...|.|+.|+.. +..
T Consensus 439 ~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eAHesEilcLeyS~p~~~~k 517 (1080)
T KOG1408|consen 439 IMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEAHESEILCLEYSFPVLTNK 517 (1080)
T ss_pred hhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh-hhhhhheecccceeEEEeecCchhhhH
Confidence 001345699999999999999999999999999987 5566778899999999999753 456
Q ss_pred EEEEEeCCCcEEEEEcCCC-eeeEEeec---CceeEEEecCC--CEEEEEEcCCeEEEEECCCCeEEEEecC-----CCC
Q 002591 723 LICSCDGDGEIRYWSINNG-SCTRVFKG---GTAQMRFQPHL--GRYLAAAAENVVSILDAETQACRLSLQG-----HTK 791 (903)
Q Consensus 723 ll~sgs~Dg~I~iwDi~t~-~~~~~~~~---~~~~v~~sp~~--~~ll~~s~dg~I~i~D~~t~~~~~~l~~-----h~~ 791 (903)
+|++++.|..|.|||+... ..+.++.+ .++.+.|...+ ...++++.|..|.+--.........+.. ...
T Consensus 518 LLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~kt 597 (1080)
T KOG1408|consen 518 LLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKT 597 (1080)
T ss_pred hhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccc
Confidence 8999999999999999754 34455544 46778888877 5788888888776543332211112221 234
Q ss_pred CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-
Q 002591 792 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM- 869 (903)
Q Consensus 792 ~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~- 869 (903)
.+..++..|..+++++++.| .|+|||+.+++..+.++.-..|++....+...|.|.||++.+.|+++.|||+.+++++
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA 677 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh
Confidence 68899999999999999999 9999999999776777766778888999999999999999999999999999999999
Q ss_pred EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 870 TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 870 ~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
...+|...|+.+.|.+|.+.|++.+.||+|.||+
T Consensus 678 ~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 678 QMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred hhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 8899999999999999999999999999999996
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-25 Score=251.48 Aligned_cols=244 Identities=19% Similarity=0.317 Sum_probs=197.8
Q ss_pred eeEEec-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC--------------------------------C------
Q 002591 657 SKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--------------------------------P------ 697 (903)
Q Consensus 657 ~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~--------------------------------~------ 697 (903)
....+. .|.+.|+++.|++||+|||+||.|+.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 334455 8999999999999999999999999999997754 0
Q ss_pred ---------------------CceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec--CceeE
Q 002591 698 ---------------------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQM 754 (903)
Q Consensus 698 ---------------------~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~--~~~~v 754 (903)
.++++.|.||.+.|.+|.|+.++ +|++++.|.+||+|++....|+++|.. -++|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEecCCeeEEE
Confidence 01245667999999999999763 667999999999999999999999864 58999
Q ss_pred EEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe--
Q 002591 755 RFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL-- 830 (903)
Q Consensus 755 ~~sp~~-~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~-- 830 (903)
+|+|.+ ++|++|+-|+.|+||++...+.+.-...+ .-|+++||.|||++.++|+.+ .+++|+....+........
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 999966 78888999999999999988877765544 889999999999999999998 9999998765221111111
Q ss_pred ---ecCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCCcEE-EEccCC--CCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 831 ---SCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM-TLTAHE--GLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 831 ---~~~~~~i~si~~sp~g-~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~--~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+.....|+.+.|.|.. ..+++.+.|..|+|||.++..++ .+.++. ..-....|+.||++|+++++|..|+||+
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence 1112379999999754 35999999999999999888877 555443 2345668888999999999999999996
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=243.63 Aligned_cols=224 Identities=17% Similarity=0.263 Sum_probs=181.0
Q ss_pred eEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------ceeEEeccCCCCeEEEEECCCC-CEEEEEeCCC
Q 002591 617 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSFDK 687 (903)
Q Consensus 617 ~~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~V~vWd~~t~-------~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg 687 (903)
..+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.++ ..+..+.+|...|.+|+|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 34789999999999999 8899999999999999998754 3567889999999999999985 6999999999
Q ss_pred cEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc----eeEEEecCCCEE
Q 002591 688 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----AQMRFQPHLGRY 763 (903)
Q Consensus 688 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~----~~v~~sp~~~~l 763 (903)
+|+|||+.+ +..+..+.+|...|.+++|+|++. +|++++.|+.|+|||+++++.+..+..+. ..+.|.++++.+
T Consensus 149 tVrIWDl~t-g~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVER-GKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCC-CeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 999999997 677888999999999999999976 66799999999999999999887776542 356788888888
Q ss_pred EEEE----cCCeEEEEECCCCe-EEEEecCC-CCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCCCCcceEEEee-cCC
Q 002591 764 LAAA----AENVVSILDAETQA-CRLSLQGH-TKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHELS-CNG 834 (903)
Q Consensus 764 l~~s----~dg~I~i~D~~t~~-~~~~l~~h-~~~V~sl~~spdg~~lasgs~-d-~I~iwdl~s~~~~~~i~~~~-~~~ 834 (903)
++++ .|+.|++||+++.. ++..+..+ ...+....|++++++|++++. | .|++||+.++. .+.... .+.
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~ 303 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSV 303 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCC
Confidence 8765 37899999999764 33333323 345666789999998888773 5 99999998764 222222 234
Q ss_pred CceEEEEEeCC
Q 002591 835 NKFHSCVFHPT 845 (903)
Q Consensus 835 ~~i~si~~sp~ 845 (903)
..+..++|.|.
T Consensus 304 ~~~~g~~~~pk 314 (493)
T PTZ00421 304 EPHKGLCMMPK 314 (493)
T ss_pred CCCcceEeccc
Confidence 45677778775
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=217.95 Aligned_cols=269 Identities=18% Similarity=0.266 Sum_probs=215.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCcee
Q 002591 622 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 701 (903)
Q Consensus 622 H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~ 701 (903)
-.+.|.+|.|++.+..|++++.||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.+ + ..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~-~-~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNT-G-NE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecC-C-cc
Confidence 3678999999999999999999999999999876444444 5889999999987 46899999999999999997 3 34
Q ss_pred EEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 002591 702 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 781 (903)
Q Consensus 702 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~ 781 (903)
..+-.|...|.||.+.+..+ .+++|+.|++|++||.+...+...+.......+.+-.++.|++|+.+..|.+||+++..
T Consensus 88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence 55667999999999998755 45599999999999999877777776666677788889999999999999999999876
Q ss_pred EEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-CCcceEEEeecCC---------CceEEEEEeCCCCE
Q 002591 782 CRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHELSCNG---------NKFHSCVFHPTYPS 848 (903)
Q Consensus 782 ~~~~l~--~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~-~~~~~i~~~~~~~---------~~i~si~~sp~g~~ 848 (903)
...... .-+-.+.||++-|++.-+++++-+ .|.+=.+... ........+++|. .+|++++|||-...
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t 246 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT 246 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence 554332 234568999999988755555555 5554444332 1112233444442 36899999999999
Q ss_pred EEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEec
Q 002591 849 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASH 895 (903)
Q Consensus 849 l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~ 895 (903)
|++|+.||.|.+||+.+.+.+ .+...+..|.+++|+.+|..||+|+.
T Consensus 247 faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999998877 66667788999999999999999874
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=236.25 Aligned_cols=346 Identities=15% Similarity=0.204 Sum_probs=250.1
Q ss_pred cCCCeeeeCCcchhhhhhccccccCCCCCceEEeeecCC---CCCcCCCCcccccccCcceeeeeEeecCCCCeEEEEEc
Q 002591 556 SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFS 632 (903)
Q Consensus 556 ~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~d~---~~~~~~~~~~~d~~~~~~~~~~~~l~~H~~~V~~l~fs 632 (903)
++.+.+|+..++......+......+.+. +.+.+-+.. ..........+.+++-.+-+.+.+++++.+.|++|.=+
T Consensus 133 ~~~l~vw~~s~~~~e~~l~~~~~~~~~~~-Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqs 211 (910)
T KOG1539|consen 133 SNILFVWKTSSIQEELYLQSTFLKVEGDF-ITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQS 211 (910)
T ss_pred cCcEEEEEeccccccccccceeeeccCCc-eeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccC
Confidence 55668899887522112222222222332 444433322 11111122223333333668999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCE-EEEEeCCCcEEEEeCCCCCceeEEeccCCCce
Q 002591 633 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSLRTFMGHSASV 711 (903)
Q Consensus 633 pdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V 711 (903)
|-=..+|.|..+|+|.|++++.++.+.+|+..-+.|+.++|.-||.. +++|+..|.+.+||++...........|.+.|
T Consensus 212 PaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv 291 (910)
T KOG1539|consen 212 PALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSV 291 (910)
T ss_pred CcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCc
Confidence 98889999999999999999999999999877799999999999985 56677789999999986332222222444444
Q ss_pred EEEEecCC----------------------------------------------CCeEEEEEeCCCcEEEEEcCC-----
Q 002591 712 MSLDFHPN----------------------------------------------KDDLICSCDGDGEIRYWSINN----- 740 (903)
Q Consensus 712 ~sl~fsp~----------------------------------------------~~~ll~sgs~Dg~I~iwDi~t----- 740 (903)
..+.|.+. ..+.+.+++.|++.+.+++..
T Consensus 292 ~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~ 371 (910)
T KOG1539|consen 292 TGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ 371 (910)
T ss_pred ccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhH
Confidence 44444443 233333444444333333210
Q ss_pred ------------------------------------------------------------Cee-eEEe--------ecCc
Q 002591 741 ------------------------------------------------------------GSC-TRVF--------KGGT 751 (903)
Q Consensus 741 ------------------------------------------------------------~~~-~~~~--------~~~~ 751 (903)
... ..++ ...+
T Consensus 372 ~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~ 451 (910)
T KOG1539|consen 372 ELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINA 451 (910)
T ss_pred hhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcce
Confidence 000 0000 0123
Q ss_pred eeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe---cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-----
Q 002591 752 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS----- 822 (903)
Q Consensus 752 ~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l---~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~----- 822 (903)
.+++.++.|++.+.|.+.|.|.+|++.+|-....+ ..|..+|+.++.+.-++.+++++.+ -+++||+....
T Consensus 452 ~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l 531 (910)
T KOG1539|consen 452 TAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL 531 (910)
T ss_pred EEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeee
Confidence 45778888899999999999999999999888888 4799999999999988888888887 89999987652
Q ss_pred ---------------------------------CcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE
Q 002591 823 ---------------------------------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 869 (903)
Q Consensus 823 ---------------------------------~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~ 869 (903)
..+.++.+.+|.+.|++++|+|||++|++++.|++|++||+.++.++
T Consensus 532 ~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 532 RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 01223455678999999999999999999999999999999999999
Q ss_pred EEccCCCCEEEEEEecCCCEEEEEecC-CcEEEc
Q 002591 870 TLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 902 (903)
Q Consensus 870 ~~~~h~~~V~sl~~spdg~~LaSgs~D-G~I~IW 902 (903)
-...-+.+++++.|+|+|.+|||+..| .-|++|
T Consensus 612 D~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 612 DGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred eeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 877888999999999999999999998 679999
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-24 Score=238.00 Aligned_cols=237 Identities=19% Similarity=0.309 Sum_probs=206.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc-CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCcee
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 701 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~ 701 (903)
.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.|+.|.++|++......
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 77899999999999999999999999999999999999998 99999999998 6689999999999999999865555
Q ss_pred EEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceeEEEecCCCEEEEEE---cCCeEEEE
Q 002591 702 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAA---AENVVSIL 775 (903)
Q Consensus 702 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~---~~~~~~v~~sp~~~~ll~~s---~dg~I~i~ 775 (903)
.++.+|...|..+.|++++. ++|+|+.|+.|.|||.........+ ...+..++|+|....+++.+ .|+.|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 66889999999999999976 6679999999999999666655544 45678899999986655543 38999999
Q ss_pred ECCCCeEEEEecCCCCCeEEEEEcCCCCEEE-EEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 002591 776 DAETQACRLSLQGHTKPIDSVCWDPSGELLA-SVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 852 (903)
Q Consensus 776 D~~t~~~~~~l~~h~~~V~sl~~spdg~~la-sgs~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~ 852 (903)
|..+++.+..+. ....|.+|.|++..+-|+ +.+.. .|.||++.+. +.+..+.+|...|..++++|||..|+++
T Consensus 374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred EcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 999999988776 467899999999887444 44433 8999999874 7888999999999999999999999999
Q ss_pred ECCCeEEEEECCCC
Q 002591 853 GCYQSLELWNMSEN 866 (903)
Q Consensus 853 s~dg~I~vwdl~~~ 866 (903)
+.|.++++|++-..
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999998764
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-25 Score=231.58 Aligned_cols=241 Identities=23% Similarity=0.421 Sum_probs=210.4
Q ss_pred eeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 002591 613 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 692 (903)
Q Consensus 613 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW 692 (903)
...+.++.+..+.|+++.|.++++++++++.|+.+++|+++......++.+|.+.|+++.|......+++|+.|.+|++|
T Consensus 209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW 288 (459)
T ss_pred hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence 45778899999999999999999999999999999999999999999999999999999999888789999999999999
Q ss_pred eCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceeEEEecCCCEEEEEEcCC
Q 002591 693 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAEN 770 (903)
Q Consensus 693 Dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~--~~~~~v~~sp~~~~ll~~s~dg 770 (903)
|+.. ..|.+++. ....+.+|+.. ...+++|-.|+.|++||+++..++.... +.+.++..+.++..+++++.|+
T Consensus 289 Dl~k-~~C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd 363 (459)
T KOG0288|consen 289 DLQK-AYCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD 363 (459)
T ss_pred hhhh-hheecccc-ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC
Confidence 9997 77777665 34556667665 2356689999999999999999888776 4578899999999999999999
Q ss_pred eEEEEECCCCeEEEEecCC----CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCC--ceEEEEEe
Q 002591 771 VVSILDAETQACRLSLQGH----TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN--KFHSCVFH 843 (903)
Q Consensus 771 ~I~i~D~~t~~~~~~l~~h----~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~--~i~si~~s 843 (903)
++.++|+++......+... ...++.++|+|++.|+++|+.| .|+||++.++ ++...+..... .|++++|+
T Consensus 364 tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE~~l~~s~s~~aI~s~~W~ 440 (459)
T KOG0288|consen 364 TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLEKVLSLSTSNAAITSLSWN 440 (459)
T ss_pred ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc---eEEEEeccCCCCcceEEEEEc
Confidence 9999999999888877642 2348889999999999999999 9999999987 45544444333 59999999
Q ss_pred CCCCEEEEEECCCeEEEE
Q 002591 844 PTYPSLLVIGCYQSLELW 861 (903)
Q Consensus 844 p~g~~l~t~s~dg~I~vw 861 (903)
|.|.++++++.++.+.+|
T Consensus 441 ~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 441 PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCchhhcccCCcceEec
Confidence 999999999999999999
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=217.19 Aligned_cols=283 Identities=20% Similarity=0.290 Sum_probs=213.6
Q ss_pred eeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEec--cCCCCeEEEEECCCCCEEEEEe-CCCcEE
Q 002591 616 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLE--EHSSLITDVRFSPSMPRLATSS-FDKTVR 690 (903)
Q Consensus 616 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~--~~~l~--~h~~~V~~l~fspdg~~Lasgs-~Dg~I~ 690 (903)
+..+++|.+.|+|++|+.||++|||++.|++|+||+++.... .+.++ ..-+.-+.++|.||.+-+++.. ...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 456899999999999999999999999999999999985322 11221 1223568899999988665554 456799
Q ss_pred EEeCCCC--Cc-ee--------EEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceeEEE
Q 002591 691 VWDADNP--GY-SL--------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRF 756 (903)
Q Consensus 691 IWDl~~~--~~-~~--------~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~~~v~~ 756 (903)
+|.+... +. .. ..-..|.-.|..+-.... ..+|++|+.|..|.+|+++ |..+..+.. .....+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 9977531 11 11 111235556666665544 4577799999999999999 887777654 3456889
Q ss_pred ecCCCEEEEEEcCCeEEEEECC---CC-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC----CC
Q 002591 757 QPHLGRYLAAAAENVVSILDAE---TQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG----SE 823 (903)
Q Consensus 757 sp~~~~ll~~s~dg~I~i~D~~---t~-----~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~----~~ 823 (903)
+|+|.++++++..-.|++|++- .| +.+..+++|...|..++|+++...+++.+.| +++|||+.-. ..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999753 22 3567889999999999999999999999999 9999998642 22
Q ss_pred cceEEEe----ecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE--EEccCCCCEEEEEEecCCCEEEEEecCC
Q 002591 824 GECVHEL----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 897 (903)
Q Consensus 824 ~~~i~~~----~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~--~~~~h~~~V~sl~~spdg~~LaSgs~DG 897 (903)
.+.+++. ...+.....+..+|+|..|+++ ....|++|..++++.. ....|...|.+++|+++|++++|++ |.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 2333322 2223445588999999966664 4558999999998877 3457999999999999999999997 66
Q ss_pred cEEEc
Q 002591 898 FVKLW 902 (903)
Q Consensus 898 ~I~IW 902 (903)
.++++
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 67664
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-25 Score=222.13 Aligned_cols=248 Identities=14% Similarity=0.235 Sum_probs=206.9
Q ss_pred eeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec--cCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 002591 613 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVR 690 (903)
Q Consensus 613 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~I~ 690 (903)
...+++|-.|.+.|+++.|+|....|++|+.|++|++||+.+....+.++ ....+|.+|.|+|.|.+|++|..--+++
T Consensus 162 hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~r 241 (430)
T KOG0640|consen 162 HPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLR 241 (430)
T ss_pred CceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCcee
Confidence 35678889999999999999999999999999999999998654444443 3567899999999999999999999999
Q ss_pred EEeCCCCCceeEEe---ccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-----CceeEEEecCCCE
Q 002591 691 VWDADNPGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGR 762 (903)
Q Consensus 691 IWDl~~~~~~~~~~---~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~-----~~~~v~~sp~~~~ 762 (903)
+||+++ ..+...- ..|++.|+++.+++.+. +.++++.||.|+|||--+++|++++.. .+.+..|..++++
T Consensus 242 lYdv~T-~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky 319 (430)
T KOG0640|consen 242 LYDVNT-YQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY 319 (430)
T ss_pred EEeccc-eeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE
Confidence 999998 4444322 36999999999999976 566999999999999999999988853 3556779999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEecCCC--C---CeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCC
Q 002591 763 YLAAAAENVVSILDAETQACRLSLQGHT--K---PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGN 835 (903)
Q Consensus 763 ll~~s~dg~I~i~D~~t~~~~~~l~~h~--~---~V~sl~~spdg~~lasgs~d--~I~iwdl~s~~~~~~i~~~~~~~~ 835 (903)
+++.+.|..|++|++.+++++.++.+.. + --+...|+....|++.-.+. .++-||.++...... .-.+|.+
T Consensus 320 iLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l--~slgHn~ 397 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL--LSLGHNG 397 (430)
T ss_pred EeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh--cccCCCC
Confidence 9999999999999999999999887641 1 23345688888888877766 799999998754322 2346889
Q ss_pred ceEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002591 836 KFHSCVFHPTYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 836 ~i~si~~sp~g~~l~t~s~dg~I~vwdl~ 864 (903)
.+..+.-+|.+..+++|+.|..+++|--+
T Consensus 398 a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 398 AVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CceEEEeCCCCCceeeecccceeeeeeec
Confidence 99999999999999999999999999643
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-24 Score=216.47 Aligned_cols=257 Identities=21% Similarity=0.379 Sum_probs=209.7
Q ss_pred EEEEEeCCCcEEEEECCC------------CceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEe
Q 002591 637 LLATGGHDKKAVLWHTDT------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 704 (903)
Q Consensus 637 ~Latgs~Dg~V~vWd~~t------------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~ 704 (903)
.|++|++...|.-+++.. ...+..+..|.+.|++|+.+ +.++|+|+.|-+|+|||+.. ...+..+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k-~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK-RKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccc-hhhhcce
Confidence 467788877777676542 12355677899999999985 78999999999999999997 6677888
Q ss_pred ccCCCceEEEEecCCCC--eEEEEEeCCCcEEEEEcCCCeeeEEeec---CceeEEEecCCCEEEEEEcCCeEEEEECCC
Q 002591 705 MGHSASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAET 779 (903)
Q Consensus 705 ~~h~~~V~sl~fsp~~~--~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t 779 (903)
..|.+.|+++.|.+.-. ++| +|++||.|.+|++....++..++. .++.++++|.++.-++.+.|+.+++|++-+
T Consensus 80 l~HagsitaL~F~~~~S~shLl-S~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLL-SGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred eccccceEEEEecCCcchhhee-eecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence 88999999999988743 455 999999999999999988888765 478899999999999999999999999999
Q ss_pred CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEE
Q 002591 780 QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLE 859 (903)
Q Consensus 780 ~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~ 859 (903)
|+.-+.+.- ...-+.|.|+|.|.+|+.+..+.|-||.+.+... ..++.. ...+.++.|- ++.+|++|+.|+.|.
T Consensus 159 Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v---~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~ 232 (362)
T KOG0294|consen 159 GRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASV---FREIEN-PKRILCATFL-DGSELLVGGDNEWIS 232 (362)
T ss_pred Cccceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHhH---hhhhhc-cccceeeeec-CCceEEEecCCceEE
Confidence 876665542 2233459999999999999999999999976522 222211 2345555554 667899999999999
Q ss_pred EEECCCCcEE-EEccCCCCEEEEEE--ecCCCEEEEEecCCcEEEcC
Q 002591 860 LWNMSENKTM-TLTAHEGLIAALAV--STETGYVASASHDKFVKLWK 903 (903)
Q Consensus 860 vwdl~~~~~~-~~~~h~~~V~sl~~--spdg~~LaSgs~DG~I~IWd 903 (903)
+||.+...+. .+.+|+..|.++.+ .|++.||+|+|.||.|+|||
T Consensus 233 ~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 233 LKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred EeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 9999987776 78899999999985 46788999999999999997
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-24 Score=236.88 Aligned_cols=274 Identities=18% Similarity=0.315 Sum_probs=227.3
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEeccCCCCeEE-EEECC-CCCEEEEEeCCC
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITD-VRFSP-SMPRLATSSFDK 687 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~--~~~l~~h~~~V~~-l~fsp-dg~~Lasgs~Dg 687 (903)
.++..+.+++|...|..|++.+.. .+++++.||+++||+-..... ...+.+|.+.|.+ ++|-+ ++-.|++|+.|+
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 456678899999999999876554 899999999999999653332 3457788888888 88886 444699999999
Q ss_pred cEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceeEEEecCCCEEE
Q 002591 688 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYL 764 (903)
Q Consensus 688 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~---~~~v~~sp~~~~ll 764 (903)
+|.+|.+.. ..++.++.+|...|+|+....++. +++|+.|.++++|.+. ++...+.+| +-.+...|.+ .++
T Consensus 82 ~i~v~~~~~-~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~v 155 (745)
T KOG0301|consen 82 TIIVFKLSQ-AEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYV 155 (745)
T ss_pred eEEEEecCC-CCchhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEE
Confidence 999999987 788999999999999999876654 5699999999999764 444445554 4556677776 999
Q ss_pred EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEe
Q 002591 765 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 843 (903)
Q Consensus 765 ~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~s 843 (903)
+|+.|.+|++|.. ++++.+|.+|.+.|+.+++-+++.++ +++.| .|++|++ ++ .++.++.+|.+.++++...
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~fl-ScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~ 228 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFL-SCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMA 228 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeE-eecCCceEEEEec-cC---ceeeeeeccceEEEEEEec
Confidence 9999999999987 78889999999999999999876555 55555 9999999 33 7899999999999999988
Q ss_pred CCCCEEEEEECCCeEEEEECCCCcEEEEccCCC-CEEEEEEecCCCEEEEEecCCcEEEc
Q 002591 844 PTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 844 p~g~~l~t~s~dg~I~vwdl~~~~~~~~~~h~~-~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
.++..|++++.|++++||+.. ++.....|.. .|+++++-++|. |++|++||.||||
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 888899999999999999987 5554444544 899999988887 6778889999998
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-24 Score=226.80 Aligned_cols=274 Identities=20% Similarity=0.266 Sum_probs=220.8
Q ss_pred eeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE----E-------------e-ccCCCCeEEEEECCCC
Q 002591 616 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT----N-------------L-EEHSSLITDVRFSPSM 677 (903)
Q Consensus 616 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~----~-------------l-~~h~~~V~~l~fspdg 677 (903)
+..+..|.-+|+||++++|.+++++++.|++|.-|++.+++..+ + - +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 56778899999999999999999999999999999988776431 1 1 2688899999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceeE
Q 002591 678 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQM 754 (903)
Q Consensus 678 ~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~---~~~v 754 (903)
+|||+|+.|..|.||+.++ ...+..+.+|.+.|.+++|-.....+ ++++.|+.|++|++.....+.++-++ +..+
T Consensus 215 kylatgg~d~~v~Iw~~~t-~ehv~~~~ghr~~V~~L~fr~gt~~l-ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDT-LEHVKVFKGHRGAVSSLAFRKGTSEL-YSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcc-cchhhcccccccceeeeeeecCccce-eeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 9999999999999999998 77889999999999999998765555 49999999999999988777666554 4455
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee--
Q 002591 755 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-- 831 (903)
Q Consensus 755 ~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~-- 831 (903)
........+-+++.|.++++|++. .+....+.+|.+.+.|++|-. ...|++|+++ .|.+|++-..+..-......
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred chhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccc
Confidence 555666666677799999999994 344456778999999999986 4567788888 99999997653211111100
Q ss_pred -------cCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCc----EEEEccCCCCEEEEEEecCCCEEEEE
Q 002591 832 -------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK----TMTLTAHEGLIAALAVSTETGYVASA 893 (903)
Q Consensus 832 -------~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~----~~~~~~h~~~V~sl~~spdg~~LaSg 893 (903)
.+...|++++..|..+.+++|+.+|.|++|-+.++- ++.-..-.+.|++|+|+++|++|++|
T Consensus 371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 112378999999999999999999999999999882 23333467899999999999966665
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=197.29 Aligned_cols=246 Identities=19% Similarity=0.345 Sum_probs=207.5
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eeEEeccCCCCeEEEEECCC----CCEEEEEeC
Q 002591 615 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHSSLITDVRFSPS----MPRLATSSF 685 (903)
Q Consensus 615 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~-----~~~~l~~h~~~V~~l~fspd----g~~Lasgs~ 685 (903)
..+.-+.|.+.|+|.+|+|+|.+||+|+.|++|++.-+.... ....|.-|.+.|.+++|-.+ +.+|++++.
T Consensus 81 ~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 81 LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence 334456799999999999999999999999999998665322 23457789999999999653 457777764
Q ss_pred -CCcEEEEeCCCCCceeEEeccCCCceEEEE-ecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----------Ccee
Q 002591 686 -DKTVRVWDADNPGYSLRTFMGHSASVMSLD-FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----------GTAQ 753 (903)
Q Consensus 686 -Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~-fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~----------~~~~ 753 (903)
|..|++-|... +..+..+.+|++.|.++- |+ +.++++|+.|.+|++||++-..|+.++.. .+..
T Consensus 161 gdc~iy~tdc~~-g~~~~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa 236 (350)
T KOG0641|consen 161 GDCKIYITDCGR-GQGFHALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA 236 (350)
T ss_pred CcceEEEeecCC-CCcceeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence 78888889887 778999999999998763 43 45888999999999999999998887632 3567
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-CCcceEEEee
Q 002591 754 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHELS 831 (903)
Q Consensus 754 v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~-~~~~~i~~~~ 831 (903)
+++.|.+..++++-.|....+||++.++.+..+..|...|.|+.|+|...|+.+++.| .|++-|+... .....+....
T Consensus 237 v~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ 316 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA 316 (350)
T ss_pred EEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE
Confidence 8899999999999999999999999999999999999999999999999999999999 9999998643 1123445556
Q ss_pred cCCCceEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002591 832 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 832 ~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~ 864 (903)
.|...+..|.|+|..-.+++.+.|+++.+|-+.
T Consensus 317 ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 317 EHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 678899999999999999999999999999764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-22 Score=219.94 Aligned_cols=261 Identities=13% Similarity=0.115 Sum_probs=204.1
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEE-EEEeCCCcEEEEeCCCCCceeEEeccCCCceEEE
Q 002591 636 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 714 (903)
Q Consensus 636 ~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl 714 (903)
.++++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||+.+ +..+..+..+.. +..+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPSGPD-PELF 78 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccCCCC-ccEE
Confidence 5788999999999999999998888876654 7789999999976 5667789999999987 555565654443 5678
Q ss_pred EecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec--CceeEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEecCCCC
Q 002591 715 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTK 791 (903)
Q Consensus 715 ~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~--~~~~v~~sp~~~~ll~~s~dg-~I~i~D~~t~~~~~~l~~h~~ 791 (903)
+|+|+++.++++++.|+.|++||+++.+.+..+.. ....++|+|++..++++..++ .+.+||.++++.+..+.. ..
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~ 157 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQ 157 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CC
Confidence 99999887777777899999999999888777753 356789999999998888765 577889998877665542 33
Q ss_pred CeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceEEEeecC-------CCceEEEEEeCCCCEEEEE-ECCCeEEEE
Q 002591 792 PIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVFHPTYPSLLVI-GCYQSLELW 861 (903)
Q Consensus 792 ~V~sl~~spdg~~lasgs-~d-~I~iwdl~s~~~~~~i~~~~~~-------~~~i~si~~sp~g~~l~t~-s~dg~I~vw 861 (903)
.+.+++|++++.+|++++ .+ .|++||+.+++ ++..+..+ ......++|+|++++++++ +.++.|.+|
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRK---VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcce---eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 457899999999775544 45 99999998773 33322211 1123568899999986664 456789999
Q ss_pred ECCCCcEEEEccCCCCEEEEEEecCCCEEEEE-ecCCcEEEcC
Q 002591 862 NMSENKTMTLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 903 (903)
Q Consensus 862 dl~~~~~~~~~~h~~~V~sl~~spdg~~LaSg-s~DG~I~IWd 903 (903)
|+.+++.+....+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 235 DAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred ECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 99998887554566689999999999999886 4689999997
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-24 Score=228.95 Aligned_cols=275 Identities=19% Similarity=0.300 Sum_probs=232.7
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceeEEec--cCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 002591 621 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 695 (903)
Q Consensus 621 ~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t---~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~ 695 (903)
.|..-|.++.+|...++++||+ .|.|+|||+.. ...+..+. .....|.++.+.|||+.|++|++-.+|.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 5888999999999999999997 57899999873 23333343 245679999999999999999999999999998
Q ss_pred CCCceeE-EeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceeEEEecCCCEEEEEEcCCe
Q 002591 696 NPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENV 771 (903)
Q Consensus 696 ~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~~~v~~sp~~~~ll~~s~dg~ 771 (903)
.+...++ .+....-.+++++.+||.+ +.++|..||.|.|||+.+...++.|.+ +..+|.++++|..|.+|+-|++
T Consensus 496 apTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 7544333 3333445678899999976 455888899999999999999999986 5788999999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 002591 772 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 850 (903)
Q Consensus 772 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~ 850 (903)
|+.||+++++.+.... ..+.|.++.++|.+++|+.|-++ .+.|...... ..+.+.-|+..|.++.|.+.|++++
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp----~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP----EKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc----cceeecccccEEEEEEecccCceee
Confidence 9999999987665433 56789999999999999999888 7888776543 3445566789999999999999999
Q ss_pred EEECCCeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecCCcEEEc
Q 002591 851 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 851 t~s~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
+.+.|+.+..|...-|..+.-....+.|.++.++.|.+||+||+.|....||
T Consensus 650 StGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 9999999999999999888777888999999999999999999999887776
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=212.44 Aligned_cols=275 Identities=20% Similarity=0.304 Sum_probs=222.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEec
Q 002591 626 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 705 (903)
Q Consensus 626 V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~ 705 (903)
..||.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++|++||+.|+|+|.|..|.+||+.. +.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC-CCceeEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999998 55776665
Q ss_pred cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe--eeEEe-----ecCceeEEEecCCCEEEEEEcCCeEEEEECC
Q 002591 706 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVF-----KGGTAQMRFQPHLGRYLAAAAENVVSILDAE 778 (903)
Q Consensus 706 ~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~--~~~~~-----~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~ 778 (903)
...+|+...|+|...+.++++-.+..-.+.++...+ ++..- .....+..|.+.++++++|...|.+.+||..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 678999999999887777666656556666665432 21111 1122334588999999999999999999999
Q ss_pred CCeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC------CCcceEEEee--cCCCceEEEEEeCCCCE
Q 002591 779 TQACRLSLQGHT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSG------SEGECVHELS--CNGNKFHSCVFHPTYPS 848 (903)
Q Consensus 779 t~~~~~~l~~h~-~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~------~~~~~i~~~~--~~~~~i~si~~sp~g~~ 848 (903)
+.+++..++-.. ..|..|.|+-.|++|+.-+.| .||.|+++.- .+....+.+. .+...-.+|+|+.+|.|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999999888665 789999999999999999999 9999998632 1111111111 12334568899999999
Q ss_pred EEEEECC-CeEEEEECCCCcEE-EEccCC-CCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 849 LLVIGCY-QSLELWNMSENKTM-TLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 849 l~t~s~d-g~I~vwdl~~~~~~-~~~~h~-~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+++++.. ..++||....|.++ .+.+.. ....++.|+|-...|++- ..|.|+||.
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 9888754 48999999999998 555555 578889999998888877 789999993
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=235.76 Aligned_cols=229 Identities=16% Similarity=0.227 Sum_probs=176.6
Q ss_pred eeeeeEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc--------eeEEeccCCCCeEEEEECCCCCE-EEE
Q 002591 613 FKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHSSLITDVRFSPSMPR-LAT 682 (903)
Q Consensus 613 ~~~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~V~vWd~~t~~--------~~~~l~~h~~~V~~l~fspdg~~-Las 682 (903)
...+..+.+|.+.|.+|+|+|+ +.+||+|+.|++|+|||+.++. .+..+.+|...|.+|+|+|++.. |++
T Consensus 64 ~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaS 143 (568)
T PTZ00420 64 KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCS 143 (568)
T ss_pred CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEE
Confidence 3567789999999999999997 7899999999999999997532 34567899999999999999876 578
Q ss_pred EeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCce---eE-----
Q 002591 683 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---QM----- 754 (903)
Q Consensus 683 gs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~---~v----- 754 (903)
++.|++|+|||+++ +..+..+. |...|.+++|++++. +|++++.|+.|+|||+++++++..+.++.. ..
T Consensus 144 gS~DgtIrIWDl~t-g~~~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~ 220 (568)
T PTZ00420 144 SGFDSFVNIWDIEN-EKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWID 220 (568)
T ss_pred EeCCCeEEEEECCC-CcEEEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEee
Confidence 99999999999998 44555554 567899999999977 556888899999999999998888776432 11
Q ss_pred EEecCCCEEEEEEcCC----eEEEEECCC-CeEEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 002591 755 RFQPHLGRYLAAAAEN----VVSILDAET-QACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 826 (903)
Q Consensus 755 ~~sp~~~~ll~~s~dg----~I~i~D~~t-~~~~~~l~--~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~ 826 (903)
.|+++++++++++.++ .|+|||+++ .+++..+. .+.+.+......+++.++++|+.| .|++|++..+. ...
T Consensus 221 ~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~ 299 (568)
T PTZ00420 221 GLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRK 299 (568)
T ss_pred eEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEe
Confidence 2347888999988774 799999995 45555443 233334444445568889999888 99999997652 223
Q ss_pred EEEeecCCCceEEEEEeCCC
Q 002591 827 VHELSCNGNKFHSCVFHPTY 846 (903)
Q Consensus 827 i~~~~~~~~~i~si~~sp~g 846 (903)
+..+. +..++..++|.|+.
T Consensus 300 l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 300 VNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred ecccc-cCCCccceEEcccc
Confidence 33333 45677888998864
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=207.48 Aligned_cols=246 Identities=20% Similarity=0.341 Sum_probs=205.3
Q ss_pred CceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEe-CCCcE
Q 002591 655 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEI 733 (903)
Q Consensus 655 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs-~Dg~I 733 (903)
.+..+.+......|++|.|+.+|.+|++++.|.+|+|||..+ ++.++++..+.-.|..++|......++.+.. .|.+|
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~-g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC-CceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 445566667788999999999999999999999999999998 7888998888888999999877666664332 38899
Q ss_pred EEEEcCCCeeeEEeecC---ceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002591 734 RYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 810 (903)
Q Consensus 734 ~iwDi~t~~~~~~~~~~---~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~ 810 (903)
|+.++.+.+.++.|.++ +..++.+|-+..+++++.|++|++||++..++...+.....+ .++|+|.|-++|++..
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecC
Confidence 99999999999999986 567889999999999999999999999988887776644444 4689999999999998
Q ss_pred C-eEEEEECCCCCCcc-eEEEee-cCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCC---EEEEEE
Q 002591 811 D-SVRVWTVGSGSEGE-CVHELS-CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL---IAALAV 883 (903)
Q Consensus 811 d-~I~iwdl~s~~~~~-~i~~~~-~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~---V~sl~~ 883 (903)
. .|++||+++..... ....+. ........+.|+|+|++|+.++..+.+++.|.-+|.+. .+..+... -...+|
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 8 99999999864322 222222 34667899999999999999999999999999999877 55544332 257789
Q ss_pred ecCCCEEEEEecCCcEEEcC
Q 002591 884 STETGYVASASHDKFVKLWK 903 (903)
Q Consensus 884 spdg~~LaSgs~DG~I~IWd 903 (903)
+||+++|++|+.||+|++|+
T Consensus 241 tPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred CCCCcEEEEecCCCcEEEEE
Confidence 99999999999999999996
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=223.96 Aligned_cols=245 Identities=18% Similarity=0.372 Sum_probs=203.3
Q ss_pred ecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc----------eeEEeccCCCCeEEEEECCCCC-EEEEEeCCC
Q 002591 620 RASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLK----------SKTNLEEHSSLITDVRFSPSMP-RLATSSFDK 687 (903)
Q Consensus 620 ~~H~~~V~~l~fspdg-~~Latgs~Dg~V~vWd~~t~~----------~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg 687 (903)
-.|.+.|+.+.+-|.. .+||+.+..+.|.|||..+.. +..++.+|...-..|+|++... +|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 4599999999999965 577888889999999976321 2237889999889999998755 799999999
Q ss_pred cEEEEeCCCCCc------eeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCC
Q 002591 688 TVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG 761 (903)
Q Consensus 688 ~I~IWDl~~~~~------~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~ 761 (903)
+|++||+..... ....+.+|...|..++|++....+|+++++|+.+.|||+|++.
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~------------------- 261 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT------------------- 261 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC-------------------
Confidence 999999975433 3567889999999999999999999999999999999998631
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEE
Q 002591 762 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS 839 (903)
Q Consensus 762 ~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd-g~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~s 839 (903)
.++.....+|..+|+|++|+|- +.+||+|+.| +|++||+|+.. .+++.+.+|...|..
T Consensus 262 ------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 262 ------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQ 321 (422)
T ss_pred ------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcceEE
Confidence 1122234679999999999995 4588999988 99999999875 588999999999999
Q ss_pred EEEeCCC-CEEEEEECCCeEEEEECCCCc--------------E-EEEccCCCCEEEEEEecCCCE-EEEEecCCcEEEc
Q 002591 840 CVFHPTY-PSLLVIGCYQSLELWNMSENK--------------T-MTLTAHEGLIAALAVSTETGY-VASASHDKFVKLW 902 (903)
Q Consensus 840 i~~sp~g-~~l~t~s~dg~I~vwdl~~~~--------------~-~~~~~h~~~V~sl~~spdg~~-LaSgs~DG~I~IW 902 (903)
+.|+|.. ..|++++.|+.+.|||+..-. + ..-.+|...|..+.|+|+..+ |+|.++|+.+.||
T Consensus 322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW 401 (422)
T KOG0264|consen 322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIW 401 (422)
T ss_pred EEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEe
Confidence 9999975 567778899999999996421 1 255689999999999998875 7788999999999
Q ss_pred C
Q 002591 903 K 903 (903)
Q Consensus 903 d 903 (903)
+
T Consensus 402 ~ 402 (422)
T KOG0264|consen 402 Q 402 (422)
T ss_pred e
Confidence 6
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.8e-24 Score=208.43 Aligned_cols=245 Identities=22% Similarity=0.310 Sum_probs=202.5
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeEEeccCCCCeEEEEECC--CCCEEEEEeCCCcEEEEeC
Q 002591 620 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDA 694 (903)
Q Consensus 620 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~---~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~IWDl 694 (903)
..|.+.|.++...-.|++|||++.|++|+||.+... +.+.++.+|.++|+.++|.. -|.+||++++||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 469999999999999999999999999999998742 67889999999999999965 6899999999999999998
Q ss_pred CCCC-ceeEEeccCCCceEEEEecCCC-CeEEEEEeCCCcEEEEEcCCC------eeeEEeecCceeEEEecC---C---
Q 002591 695 DNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNG------SCTRVFKGGTAQMRFQPH---L--- 760 (903)
Q Consensus 695 ~~~~-~~~~~~~~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwDi~t~------~~~~~~~~~~~~v~~sp~---~--- 760 (903)
.++. .....+..|...|++++|.|.+ ..+|++++.||.|.|.+++.. +....+..+++.++|.|. +
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 8742 2244667899999999999874 336678889999999998765 223334557888998886 3
Q ss_pred --------CEEEEEEcCCeEEEEECCCC--eEEEEecCCCCCeEEEEEcCCC----CEEEEEeCC-eEEEEECCCCCCcc
Q 002591 761 --------GRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSG----ELLASVSED-SVRVWTVGSGSEGE 825 (903)
Q Consensus 761 --------~~ll~~s~dg~I~i~D~~t~--~~~~~l~~h~~~V~sl~~spdg----~~lasgs~d-~I~iwdl~s~~~~~ 825 (903)
.+|++++.|+.|+||+...+ +...++.+|.+.|+.++|.|.- .+|++++.| +|.||..+...+..
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 56999999999999998876 3444588999999999999954 389999999 99999988443333
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002591 826 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 826 ~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~ 864 (903)
....+......+..+.|+..|+.|++++.|+.|.+|.-+
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 344444456789999999999999999999999999754
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=232.09 Aligned_cols=244 Identities=24% Similarity=0.335 Sum_probs=211.3
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCC---CCEEEEEeCCCcEEEEeCCC
Q 002591 620 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS---MPRLATSSFDKTVRVWDADN 696 (903)
Q Consensus 620 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspd---g~~Lasgs~Dg~I~IWDl~~ 696 (903)
-+..-.|.|++.+|+|.+||+|..-|+++|||+...+....++.|...|.|+.|+.- .++||+++.|.-|.|||+..
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 345667999999999999999999999999999999999999999999999999863 46899999999999999988
Q ss_pred CCceeEEeccCCCceEEEEecCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEe--------ecCceeEEEecCCCEEEEEE
Q 002591 697 PGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVF--------KGGTAQMRFQPHLGRYLAAA 767 (903)
Q Consensus 697 ~~~~~~~~~~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwDi~t~~~~~~~--------~~~~~~v~~sp~~~~ll~~s 767 (903)
....+.++.+|...|+++.|.-.| +.-+++|+.|..|.+--.........| +.....+.+.|..+++++++
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 777888999999999999998765 234559999988765433211111111 23456788999999999999
Q ss_pred cCCeEEEEECCCCeEEEEecC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEe
Q 002591 768 AENVVSILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 843 (903)
Q Consensus 768 ~dg~I~i~D~~t~~~~~~l~~---h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~s 843 (903)
.|..|+|||+.+++.++.|++ |++....+..+|.|.||++.+.| ++.+||+.++ +|+....+|...|+.+.|.
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeeec
Confidence 999999999999999999986 66778888999999999999999 9999999888 8999999999999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCC
Q 002591 844 PTYPSLLVIGCYQSLELWNMSEN 866 (903)
Q Consensus 844 p~g~~l~t~s~dg~I~vwdl~~~ 866 (903)
+|.++|++.+.||.|.||.+...
T Consensus 693 nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred ccchhheeecCCceEEEEECchh
Confidence 99999999999999999998653
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=203.49 Aligned_cols=231 Identities=21% Similarity=0.299 Sum_probs=207.5
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcC
Q 002591 660 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 739 (903)
Q Consensus 660 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~ 739 (903)
.+.+|..+++-|.|+.+|.+|++|+.|.++.||-..+ ++.+-++.+|.+.|+|++...+...++ +|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty~GHtGavW~~Did~~s~~li-TGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVWCCDIDWDSKHLI-TGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecC-CceeeeecCCCceEEEEEecCCcceee-eccccceeEEEEcC
Confidence 3578999999999999999999999999999998876 788999999999999999998877555 99999999999999
Q ss_pred CCeeeEEeec--CceeEEEecCCCEEEEEEcC-----CeEEEEECC-------CCeEEEEecCCCCCeEEEEEcCCCCEE
Q 002591 740 NGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-----NVVSILDAE-------TQACRLSLQGHTKPIDSVCWDPSGELL 805 (903)
Q Consensus 740 t~~~~~~~~~--~~~~v~~sp~~~~ll~~s~d-----g~I~i~D~~-------t~~~~~~l~~h~~~V~sl~~spdg~~l 805 (903)
+|+++..++. .+..+.|+..++.++++..+ +.|.++|++ ..+++..+..+.+.++.+.|.|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9999988875 56789999999988887763 689999998 456788888899999999999999999
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEEEEccCCCCEEEEEEe
Q 002591 806 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 884 (903)
Q Consensus 806 asgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~s 884 (903)
++|.++ .|.+||++++. ..+.....|...|+.+.++++..++++++.|.+-++||+.+-.++.....+.+|++.+++
T Consensus 163 i~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 999999 99999999874 455666778889999999999999999999999999999999999888889999999999
Q ss_pred cCCCEEEEEe
Q 002591 885 TETGYVASAS 894 (903)
Q Consensus 885 pdg~~LaSgs 894 (903)
|...+++.|+
T Consensus 241 P~~d~VilgG 250 (327)
T KOG0643|consen 241 PLLDHVILGG 250 (327)
T ss_pred cccceEEecC
Confidence 9888777665
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=217.10 Aligned_cols=281 Identities=18% Similarity=0.269 Sum_probs=233.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEeccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEeCCCCC
Q 002591 622 STSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPG 698 (903)
Q Consensus 622 H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~--t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~~~~ 698 (903)
..+.|+||.|+|.-.+|++|+.|++++||.++ +...+..+.-...+|.+.+|.|+|. .+++++....++.||+.+..
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 45789999999999999999999999999886 4556777777888999999999999 89999999999999998732
Q ss_pred c-eeEEeccCC-CceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceeEEEecCCCEEEEEEcCCeEEE
Q 002591 699 Y-SLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSI 774 (903)
Q Consensus 699 ~-~~~~~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~--~~~~~v~~sp~~~~ll~~s~dg~I~i 774 (903)
. .+....++. ..+..+..++++. +|+..+..|.|.+....+++.+..++ +.+..++|+.++..+++++.+|.|++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 1 123333443 3566788899977 56688899999999999999887765 67888999999999999999999999
Q ss_pred EECCCCeEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC-eEEEEECCCC---CCcceEEEeecCCCceEEEEEeCCCCEE
Q 002591 775 LDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED-SVRVWTVGSG---SEGECVHELSCNGNKFHSCVFHPTYPSL 849 (903)
Q Consensus 775 ~D~~t~~~~~~l~~h~~-~V~sl~~spdg~~lasgs~d-~I~iwdl~s~---~~~~~i~~~~~~~~~i~si~~sp~g~~l 849 (903)
||++...+++.+....+ .-+++|.+.++.|||+|++. .|.|||..+. ...+.+..+..-...|+++.|+++...|
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 99999999998874322 34678888999999999998 8999997643 3456666666667789999999999998
Q ss_pred EEEECC--CeEEEEECCCCcEE-EEc---cCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 850 LVIGCY--QSLELWNMSENKTM-TLT---AHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 850 ~t~s~d--g~I~vwdl~~~~~~-~~~---~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+.++.. ..+++..+.+..+. .+. ..-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 888764 58999999887776 222 3446799999999999999999999999996
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.5e-23 Score=226.55 Aligned_cols=239 Identities=21% Similarity=0.378 Sum_probs=209.9
Q ss_pred ceeeeeEeecCCCCeEE-EEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcE
Q 002591 612 SFKEANSVRASTSKVIC-CHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 689 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~-l~fsp-dg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I 689 (903)
.+.+...+.+|.+-|.+ ++|.+ ++-+|++|+.|++|.+|......++.++++|...|+|++...++. +++||.|.++
T Consensus 46 ~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~Ta 124 (745)
T KOG0301|consen 46 QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTA 124 (745)
T ss_pred ccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccce
Confidence 56677788999999988 89886 555799999999999999999999999999999999999888887 9999999999
Q ss_pred EEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEE---EecCCCEEEEE
Q 002591 690 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR---FQPHLGRYLAA 766 (903)
Q Consensus 690 ~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~---~sp~~~~ll~~ 766 (903)
+||-.. .+...+.+|...|+++.+.|++ .++||+.|.+|++|.- ++++++|.+|..+++ +.+ +..|+++
T Consensus 125 kvW~~~---~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~-~~~flSc 196 (745)
T KOG0301|consen 125 KVWRIG---ELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD-DSHFLSC 196 (745)
T ss_pred EEecch---hhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec-CCCeEee
Confidence 999874 4667799999999999999986 4559999999999975 788899988866654 444 4678999
Q ss_pred EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 002591 767 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 845 (903)
Q Consensus 767 s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~ 845 (903)
+.||.|++|++ +++++.++.+|+.-|.++....++..|+++++| +++||+.. .|...+......|.++.+-++
T Consensus 197 sNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~N 270 (745)
T KOG0301|consen 197 SNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLN 270 (745)
T ss_pred cCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEEEEecCccceEEEEEeeC
Confidence 99999999999 899999999999999999988888899999999 99999986 677777776778999998888
Q ss_pred CCEEEEEECCCeEEEEECCCC
Q 002591 846 YPSLLVIGCYQSLELWNMSEN 866 (903)
Q Consensus 846 g~~l~t~s~dg~I~vwdl~~~ 866 (903)
|+ |++|++||.||||.....
T Consensus 271 gD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 271 GD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred CC-EEEeccCceEEEEEeccc
Confidence 87 999999999999988743
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=204.64 Aligned_cols=255 Identities=20% Similarity=0.343 Sum_probs=199.2
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----CCceeEEeccCCCCeEEEEECC--CCCEEEEEeCCCcEEEEe
Q 002591 620 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWD 693 (903)
Q Consensus 620 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~----t~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~IWD 693 (903)
.+|.+-|.|+.|...|+++|||+.|.+|+|||.+ +..+....+.|.+.|..|.|.+ -|..+|+++.|++|.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4689999999999999999999999999999964 4466777889999999999954 388999999999999997
Q ss_pred CCCC-----C---ceeEEeccCCCceEEEEecCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEE
Q 002591 694 ADNP-----G---YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 764 (903)
Q Consensus 694 l~~~-----~---~~~~~~~~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll 764 (903)
-... + ....++......|++|+|.|.. +..+++++.||+||||+.-.-..+..+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~---------------- 153 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT---------------- 153 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch----------------
Confidence 6211 1 2345666778899999999963 3467799999999999876543222221
Q ss_pred EEEcCCeEEEEECCCC--eEEEEecCCCCCeEEEEEcCC---CCEEEEEeCC------eEEEEECCCCC-CcceEEEeec
Q 002591 765 AAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPS---GELLASVSED------SVRVWTVGSGS-EGECVHELSC 832 (903)
Q Consensus 765 ~~s~dg~I~i~D~~t~--~~~~~l~~h~~~V~sl~~spd---g~~lasgs~d------~I~iwdl~s~~-~~~~i~~~~~ 832 (903)
+... ..+.....+..+..|+.|++. ..+||.|+++ .++||...... +...+.++..
T Consensus 154 ------------Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 154 ------------LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ------------hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 1000 000011235667889999974 3489999887 79999887654 5567778889
Q ss_pred CCCceEEEEEeCC----CCEEEEEECCCeEEEEECCCCc--------------------EE-EEccCCCCEEEEEEecCC
Q 002591 833 NGNKFHSCVFHPT----YPSLLVIGCYQSLELWNMSENK--------------------TM-TLTAHEGLIAALAVSTET 887 (903)
Q Consensus 833 ~~~~i~si~~sp~----g~~l~t~s~dg~I~vwdl~~~~--------------------~~-~~~~h~~~V~sl~~spdg 887 (903)
+..+|++++|.|+ ...|++++.|| |+||.+.... .+ .+..|.+.|+.+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 9999999999995 45688999999 9999987411 11 466899999999999999
Q ss_pred CEEEEEecCCcEEEcC
Q 002591 888 GYVASASHDKFVKLWK 903 (903)
Q Consensus 888 ~~LaSgs~DG~I~IWd 903 (903)
..|++.++||+||+|+
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999996
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=212.86 Aligned_cols=249 Identities=19% Similarity=0.250 Sum_probs=215.2
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I 691 (903)
+-..+..|+||...|+.+.|+++...+++++.|..|+||...........+.|..+|+.+..+|.|.||++++.||+..+
T Consensus 250 s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~F 329 (506)
T KOG0289|consen 250 SNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAF 329 (506)
T ss_pred hhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEE
Confidence 44567789999999999999999999999999999999999887888889999999999999999999999999999999
Q ss_pred EeCCCCCceeEEecc--CCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceeEEEecCCCEEEEE
Q 002591 692 WDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 766 (903)
Q Consensus 692 WDl~~~~~~~~~~~~--h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~~~v~~sp~~~~ll~~ 766 (903)
.|+++ +..+..... ..-.++++.|||||- +|.+|..||.|+|||+.+...+..|.+ .+..+.|+.+|-+++++
T Consensus 330 sd~~~-g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ 407 (506)
T KOG0289|consen 330 SDISS-GSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATA 407 (506)
T ss_pred EEccC-CcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEE
Confidence 99998 555544432 234589999999965 778999999999999999988877765 57789999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEecCC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC
Q 002591 767 AAENVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 844 (903)
Q Consensus 767 s~dg~I~i~D~~t~~~~~~l~~h-~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp 844 (903)
+.|+.|++||+|..+...++... ...|.+++|+..|.+|+.++.+ .|++++-.+ +...++..+..|.+..+.+.|..
T Consensus 408 add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~Fg~ 486 (506)
T KOG0289|consen 408 ADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRFGE 486 (506)
T ss_pred ecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhcccccceeeecc
Confidence 99999999999998877776643 3479999999999999999888 777777544 34567778888888899999999
Q ss_pred CCCEEEEEECCCeEEEEEC
Q 002591 845 TYPSLLVIGCYQSLELWNM 863 (903)
Q Consensus 845 ~g~~l~t~s~dg~I~vwdl 863 (903)
...++++++.|..++||.+
T Consensus 487 ~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 487 HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceEEeeccchhheEEeec
Confidence 9999999999999888864
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=229.72 Aligned_cols=303 Identities=16% Similarity=0.231 Sum_probs=241.1
Q ss_pred CcCCCCcccccccCcc---eeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEeccCCCCeEEE
Q 002591 597 PRDAGGRGMDVSQGFS---FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDV 671 (903)
Q Consensus 597 ~~~~~~~~~d~~~~~~---~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~--~~~~~l~~h~~~V~~l 671 (903)
++|+..+.|.+..... -....+++.|.+-|++++...+++.|++++.|-+|++|+...+ -++.++..|.+.|.||
T Consensus 44 GRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcl 123 (735)
T KOG0308|consen 44 GRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCL 123 (735)
T ss_pred CCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheee
Confidence 4455555555543323 2246788999999999999999999999999999999998866 6888999999999999
Q ss_pred EE-CCCCCEEEEEeCCCcEEEEeCCCCCc---------eeEEec-cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCC
Q 002591 672 RF-SPSMPRLATSSFDKTVRVWDADNPGY---------SLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 740 (903)
Q Consensus 672 ~f-spdg~~Lasgs~Dg~I~IWDl~~~~~---------~~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t 740 (903)
++ .++...+|+|+.|+.|.|||+++... ....+. ++...|++++..+.+ .+|++|+..+.|++||.++
T Consensus 124 a~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt 202 (735)
T KOG0308|consen 124 AYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRT 202 (735)
T ss_pred eecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccc
Confidence 99 88888999999999999999986311 122233 889999999999987 5778999999999999999
Q ss_pred CeeeEEeecC---ceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEE
Q 002591 741 GSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 816 (903)
Q Consensus 741 ~~~~~~~~~~---~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iw 816 (903)
.+.+-.+.++ +..+..+.+|..++++++||+|++||+...+|+.++..|...|.++..+|+-.++++|+.| .|..=
T Consensus 203 ~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 203 CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRT 282 (735)
T ss_pred ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEec
Confidence 9877777664 5677789999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEEEE-------------------------
Q 002591 817 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL------------------------- 871 (903)
Q Consensus 817 dl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~------------------------- 871 (903)
|+++......+ ...+.+|..+..+....-+-+++.|+.|+-|...-...+..
T Consensus 283 dl~n~~~~tli---ck~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~v 359 (735)
T KOG0308|consen 283 DLRNPAKSTLI---CKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSV 359 (735)
T ss_pred ccCCchhheEe---ecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCcee
Confidence 99886322222 22366777777776666678888999999997653221100
Q ss_pred ccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 872 TAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 872 ~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
......|...+.-.|.++++|-...|.+.+||
T Consensus 360 i~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 360 IPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred ccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 00111233334445778999999999999997
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-23 Score=204.67 Aligned_cols=241 Identities=24% Similarity=0.424 Sum_probs=200.4
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCC--ceeEEeccCCCceEEEEe-cCCCCeEEEEEeCCCcEEEEEc
Q 002591 662 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDF-HPNKDDLICSCDGDGEIRYWSI 738 (903)
Q Consensus 662 ~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~--~~~~~~~~h~~~V~sl~f-sp~~~~ll~sgs~Dg~I~iwDi 738 (903)
..|.+.|.++...-.|++|||++.|++|+||.+++.+ ..+.++.+|.++|+.++| +|.-..+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4688999999999999999999999999999999865 678899999999999999 5555669999999999999999
Q ss_pred CCCeeeEE-----eecCceeEEEecCC--CEEEEEEcCCeEEEEECCCC---eEEEEecCCCCCeEEEEEcCC---C---
Q 002591 739 NNGSCTRV-----FKGGTAQMRFQPHL--GRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPS---G--- 802 (903)
Q Consensus 739 ~t~~~~~~-----~~~~~~~v~~sp~~--~~ll~~s~dg~I~i~D~~t~---~~~~~l~~h~~~V~sl~~spd---g--- 802 (903)
++++..+. +...+++++|.|.+ -.|+++++||.|.|++.+.. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 88864332 34568889988875 46777888999999987764 233445679999999999995 4
Q ss_pred --------CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC----CEEEEEECCCeEEEEECCCC---
Q 002591 803 --------ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSEN--- 866 (903)
Q Consensus 803 --------~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g----~~l~t~s~dg~I~vwdl~~~--- 866 (903)
+.|++|+.| .|+||+..++ ....-..+..|...|+.++|.|.- .+|++++.||+|.||..+..
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 569999999 9999999886 334445588999999999999964 56999999999999987632
Q ss_pred -cEEEEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 867 -KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 867 -~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+...+......++.+.|+..|.+|+.++.|+.|.+|+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1224455678899999999999999999999999996
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=221.01 Aligned_cols=289 Identities=20% Similarity=0.254 Sum_probs=231.0
Q ss_pred cCcceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCE--EEEEeCC
Q 002591 609 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR--LATSSFD 686 (903)
Q Consensus 609 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~--Lasgs~D 686 (903)
..|.-.+...+++|++.|.||...|.|.+||+|+.||+|+||.+.++.+++++.- .+.|.||+|+|.+.. ||++- +
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~-~ 463 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAV-G 463 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEe-c
Confidence 3456677888999999999999999999999999999999999999999999864 447999999998763 33333 2
Q ss_pred CcEEEEeC---------------------------------CC---CCceeEEeccCCCceEEEEecCCCCeEEEEEeC-
Q 002591 687 KTVRVWDA---------------------------------DN---PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG- 729 (903)
Q Consensus 687 g~I~IWDl---------------------------------~~---~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~- 729 (903)
..+.|-+. .. ...-++....|...|..|.||..|+++..++..
T Consensus 464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence 22333322 10 011133445688899999999999977655543
Q ss_pred -CCcEEEEEcCCCeeeEEe---ecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEE
Q 002591 730 -DGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL 805 (903)
Q Consensus 730 -Dg~I~iwDi~t~~~~~~~---~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l 805 (903)
...|.|+++...+....| ++.+.++.|+|...++++++ ...|+|||+.....+.++.....+|.+++++|.|.-|
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 356889998876654433 56788899999988887765 4679999999988888888888899999999999999
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECC------CCc-EE---EEccC
Q 002591 806 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS------ENK-TM---TLTAH 874 (903)
Q Consensus 806 asgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~------~~~-~~---~~~~h 874 (903)
+.++.| .++.||+.-.. +....+..|...+++++||+....|++|+.|+++.||.-. .+- ++ .+.+|
T Consensus 623 i~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH 700 (733)
T ss_pred EEecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence 999999 99999997553 5667788889999999999999999999999999888432 222 22 56677
Q ss_pred CCC----EEEEEEecCCCEEEEEecCCcEEEc
Q 002591 875 EGL----IAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 875 ~~~----V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
... |..+.|+|.-.+|++++.||+|++|
T Consensus 701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeecccceEeecccCCCceEEecCCCceEEee
Confidence 665 9999999999999999999999999
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-21 Score=216.41 Aligned_cols=359 Identities=16% Similarity=0.219 Sum_probs=252.7
Q ss_pred CCCcceEEEEeCCCceeccCCCeeeeCCcchhhhhhccccccCCCCCceEEeeecCCCCC---cCCCCcccccccC-cc-
Q 002591 538 TTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDP---RDAGGRGMDVSQG-FS- 612 (903)
Q Consensus 538 ~~~~~~i~~s~dg~~~~~~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~d~~~~---~~~~~~~~d~~~~-~~- 612 (903)
..++.+.+...+.+++++.....|+-.+.++.+.+.... +..++...+.-.+... .+....+|+.... ..
T Consensus 74 ~lp~~I~alas~~~~vy~A~g~~i~~~~rgk~i~~~~~~-----~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~ 148 (910)
T KOG1539|consen 74 PLPDKITALASDKDYVYVASGNKIYAYARGKHIRHTTLL-----HGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEEL 148 (910)
T ss_pred CCCCceEEEEecCceEEEecCcEEEEEEccceEEEEecc-----ccceEEEEeeecceEEEEEccCcEEEEEeccccccc
Confidence 445667777888887777666666666666433332111 1133433333222211 1223334444332 11
Q ss_pred eeeeeEeecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 002591 613 FKEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 690 (903)
Q Consensus 613 ~~~~~~l~~H~~~V~~l~fspd--g~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~ 690 (903)
......++.-.+.|+++. +|. =+.|+.|+.+|.+.||++.+++.++++.++...|+++.=+|--..++.|..+|+|.
T Consensus 149 ~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vi 227 (910)
T KOG1539|consen 149 YLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVI 227 (910)
T ss_pred cccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEE
Confidence 111222233333377765 443 35789999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----cCceeEEEecCCCEEEEE
Q 002591 691 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAA 766 (903)
Q Consensus 691 IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~----~~~~~v~~sp~~~~ll~~ 766 (903)
|++++. ++.+.+|+..-+.|+++.|..||..++++++..|.+.+||++..+...... +.+....|.+....++++
T Consensus 228 ifNlK~-dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta 306 (910)
T KOG1539|consen 228 IFNLKF-DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTA 306 (910)
T ss_pred EEEccc-CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeec
Confidence 999998 788889985569999999999999999999999999999999887665543 344555566665666666
Q ss_pred EcCCeEEEE--ECCCC--eEEE----------------------------------------------------------
Q 002591 767 AAENVVSIL--DAETQ--ACRL---------------------------------------------------------- 784 (903)
Q Consensus 767 s~dg~I~i~--D~~t~--~~~~---------------------------------------------------------- 784 (903)
+.|+.+++| |...+ +.++
T Consensus 307 ~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~ 386 (910)
T KOG1539|consen 307 GADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVN 386 (910)
T ss_pred cCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccc
Confidence 666544443 31111 0000
Q ss_pred ---------------------------------------------------Eec-----CCCCCeEEEEEcCCCCEEEEE
Q 002591 785 ---------------------------------------------------SLQ-----GHTKPIDSVCWDPSGELLASV 808 (903)
Q Consensus 785 ---------------------------------------------------~l~-----~h~~~V~sl~~spdg~~lasg 808 (903)
.+. .....+++++.++.|++.+.|
T Consensus 387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG 466 (910)
T KOG1539|consen 387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIG 466 (910)
T ss_pred ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEe
Confidence 000 011346778888888887777
Q ss_pred eCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE------------------
Q 002591 809 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------------------ 869 (903)
Q Consensus 809 s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~------------------ 869 (903)
... .|.+|++.++-.......-..|...|+.++...-++.+++++.+|.+++||..++..+
T Consensus 467 ~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s 546 (910)
T KOG1539|consen 467 YSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVS 546 (910)
T ss_pred ccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehh
Confidence 766 8889998877332232223578899999999999999999999999999999875311
Q ss_pred ------------------------EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 870 ------------------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 870 ------------------------~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.+.+|.+.|++++|||||++|++++.|++|++||
T Consensus 547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 2345999999999999999999999999999998
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=218.68 Aligned_cols=235 Identities=16% Similarity=0.263 Sum_probs=189.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE------------eccCCCCeEEEEECCCCC-EEEEEeCCCcE
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN------------LEEHSSLITDVRFSPSMP-RLATSSFDKTV 689 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~------------l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I 689 (903)
...|.++.|++.|..|++.+....++|+|-+....... .++|...++|.+|+|+.+ .|++++.||++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 44799999999999888888888999999664443333 347999999999999865 78999999999
Q ss_pred EEEeCCCCCceeEEec-----cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeee-----EE-eec--CceeEEE
Q 002591 690 RVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-----RV-FKG--GTAQMRF 756 (903)
Q Consensus 690 ~IWDl~~~~~~~~~~~-----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~-----~~-~~~--~~~~v~~ 756 (903)
||||+++..+.+..++ +..-.++.++|++++.. ||+|+.||.|.+|+....... +. +.. .++++.|
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence 9999998655554444 33457899999999875 778999999999998654321 11 122 6889999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCC-eEEEEecCC--CCCeEEEEEcCCCCEEEEEeC-------CeEEEEECCCCCCcce
Q 002591 757 QPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGH--TKPIDSVCWDPSGELLASVSE-------DSVRVWTVGSGSEGEC 826 (903)
Q Consensus 757 sp~~~~ll~~s~dg~I~i~D~~t~-~~~~~l~~h--~~~V~sl~~spdg~~lasgs~-------d~I~iwdl~s~~~~~~ 826 (903)
+.++++|++-+.|+++++||++.. +++....+- ..+-+.+||+|+.++|++|+. ..+.+||..+. ..
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~ 449 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DT 449 (641)
T ss_pred ccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---ee
Confidence 999999999999999999999986 455555542 345678999999999999863 16999998776 66
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEE
Q 002591 827 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 861 (903)
Q Consensus 827 i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vw 861 (903)
+..+......|..|.|||.-+.|++++.||.++||
T Consensus 450 v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 450 VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 66776668889999999999999999999999887
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-21 Score=203.96 Aligned_cols=255 Identities=19% Similarity=0.312 Sum_probs=205.0
Q ss_pred ccccccCcceeeeeEeecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEE
Q 002591 604 GMDVSQGFSFKEANSVRAST-SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 682 (903)
Q Consensus 604 ~~d~~~~~~~~~~~~l~~H~-~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Las 682 (903)
-|++..+.-++....|+.+. .-|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++.-.+|.+|-
T Consensus 226 Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS- 303 (626)
T KOG2106|consen 226 FWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS- 303 (626)
T ss_pred EEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-
Confidence 36666665666666776554 5799999999985 67899999999999988888888779999999999999996655
Q ss_pred EeCCCcEEEEeCCCCC----------ce-----------------------------eEEeccCCCceEEEEecCCCCeE
Q 002591 683 SSFDKTVRVWDADNPG----------YS-----------------------------LRTFMGHSASVMSLDFHPNKDDL 723 (903)
Q Consensus 683 gs~Dg~I~IWDl~~~~----------~~-----------------------------~~~~~~h~~~V~sl~fsp~~~~l 723 (903)
|+.|..|..||-+-.. -. ..+..+|.+..+.++.+|+.+ .
T Consensus 304 GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q 382 (626)
T KOG2106|consen 304 GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-Q 382 (626)
T ss_pred cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-h
Confidence 9999999999832100 00 011236888899999999866 4
Q ss_pred EEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC
Q 002591 724 ICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE 803 (903)
Q Consensus 724 l~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~ 803 (903)
+++|+.|+.+++|+-..-...+.+..+..++.|+|.+ .++++...|...++|.++...+..-.. ..++++++|+|+|.
T Consensus 383 ~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~ 460 (626)
T KOG2106|consen 383 LLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGA 460 (626)
T ss_pred eeeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCC
Confidence 5599999999999944444556677889999999998 999999999999999999666655444 89999999999999
Q ss_pred EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002591 804 LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 804 ~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~ 864 (903)
+||.|+.| .|+||.+..... +....-+++..+|+.+.|++|+.+|.+-+.|-.|.+|...
T Consensus 461 ~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 461 FLAVGSHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred EEEEecCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 99999999 999999976533 3333344556899999999999999999999899999543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-22 Score=199.86 Aligned_cols=229 Identities=17% Similarity=0.304 Sum_probs=188.4
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCC--EEEEEeCCCcEEEEeC
Q 002591 617 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDA 694 (903)
Q Consensus 617 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~I~IWDl 694 (903)
+....|.++|.|++|+.||..+++|+.|+.+++||+.++ .+..+..|.++|.++.|-+... .|+|||.|++|+.||+
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~ 144 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT 144 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence 344569999999999999999999999999999999998 6777889999999999987766 8999999999999999
Q ss_pred CCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeee-----EEeecCceeEEEecCCCEEEEEEcC
Q 002591 695 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-----RVFKGGTAQMRFQPHLGRYLAAAAE 769 (903)
Q Consensus 695 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~-----~~~~~~~~~v~~sp~~~~ll~~s~d 769 (903)
+. ...+.++. ..+.|++++.-. .+++.+..+..|.+|+++++... ..++-.+.++++..+...++.|+-+
T Consensus 145 R~-~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 145 RS-SNPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred CC-CCeeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 97 55666655 567788887653 26778888999999999776422 2234467888888888888999999
Q ss_pred CeEEEEECCCC--eEEEEecCCCC---------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCce
Q 002591 770 NVVSILDAETQ--ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 837 (903)
Q Consensus 770 g~I~i~D~~t~--~~~~~l~~h~~---------~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i 837 (903)
|.+.|..+..+ +.-.+|+.|.. .|++|+|+|....|++++.| ++.+||-... ..++....+..+|
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPI 296 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCcc
Confidence 99999988876 55666777763 47889999988888888777 9999998654 4566667788999
Q ss_pred EEEEEeCCCCEEEEEEC
Q 002591 838 HSCVFHPTYPSLLVIGC 854 (903)
Q Consensus 838 ~si~~sp~g~~l~t~s~ 854 (903)
+++.|+.+|.+++.+..
T Consensus 297 tcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYALG 313 (347)
T ss_pred ceeEecCCCCEEEEEee
Confidence 99999999998876643
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-23 Score=213.80 Aligned_cols=257 Identities=17% Similarity=0.253 Sum_probs=214.0
Q ss_pred CCCCcccccccCcceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCC
Q 002591 599 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 678 (903)
Q Consensus 599 ~~~~~~~d~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~ 678 (903)
|+.+++|++. .-.+..+|++|.+.|..|++.. ..+++++.|++|+.|.++- ..++++.+ ...+..|.-+..+.
T Consensus 88 DG~VkiWnls---qR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~ 160 (433)
T KOG0268|consen 88 DGEVKIWNLS---QRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNS 160 (433)
T ss_pred CceEEEEehh---hhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccc
Confidence 3344444444 4567889999999999999987 6788999999999999865 46666654 34577888888888
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceeEEE
Q 002591 679 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRF 756 (903)
Q Consensus 679 ~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~--~~~~~~v~~ 756 (903)
.++||+.+ |.|||... ..++..+.-..+.|.++.|+|....+|++|+.|+.|.+||++....++.. ....+.++|
T Consensus 161 ~FaTcGe~--i~IWD~~R-~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Isw 237 (433)
T KOG0268|consen 161 VFATCGEQ--IDIWDEQR-DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICW 237 (433)
T ss_pred cccccCce--eeeccccc-CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceec
Confidence 99999865 99999986 67788888888899999999999999999999999999999999877644 456788999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC
Q 002591 757 QPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 834 (903)
Q Consensus 757 sp~~~~ll~~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~ 834 (903)
+|..-.|+++..|..++.||++.. .++....+|.+.|.++.|+|.|.-|++|+.| +|+||.++.+......++-. -
T Consensus 238 nPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR--M 315 (433)
T KOG0268|consen 238 NPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR--M 315 (433)
T ss_pred CccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh--h
Confidence 997778888899999999999986 6777888999999999999999999999999 99999998764433332211 3
Q ss_pred CceEEEEEeCCCCEEEEEECCCeEEEEECCCCc
Q 002591 835 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 867 (903)
Q Consensus 835 ~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~ 867 (903)
..|.++.|+-|..+|++|+.|+.|++|.....+
T Consensus 316 q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 316 QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred heeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 458899999999999999999999999876544
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=228.10 Aligned_cols=273 Identities=19% Similarity=0.362 Sum_probs=214.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceeEEecc---CCCCeEEEEECC-CCCEEEEEeCCCcEEEEeCCC
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEE---HSSLITDVRFSP-SMPRLATSSFDKTVRVWDADN 696 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs~Dg~V~vWd~~t----~~~~~~l~~---h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~~ 696 (903)
.+.+|...++-..|+.++.. .++||.+.. .++...++. -...+.+|.|.. +.++|||++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 45666777887778877754 678887652 222222221 123466788864 456899999999999999986
Q ss_pred --CCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceeEEEecCC-CEEEEEEcCC
Q 002591 697 --PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHL-GRYLAAAAEN 770 (903)
Q Consensus 697 --~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~~~v~~sp~~-~~ll~~s~dg 770 (903)
..+.+..|..|+..|.+++|++...++|++|+.||+|++||++..+...++.+ .+..+.|+|.. ..|+++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 34556788999999999999999999999999999999999999888777765 46778899876 4566666778
Q ss_pred eEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 002591 771 VVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 848 (903)
Q Consensus 771 ~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~ 848 (903)
.+.+||++.. ++...+.+|.++|.|+.|+|++.+||+|+.| .|+|||+.+... ..+..+.. ..++.++.|-|...+
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tInT-iapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTINT-IAPVGRVKWRPARSY 277 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEee-cceeeeeeeccCccc
Confidence 9999999976 6778889999999999999999999999999 999999986532 23333322 678999999998876
Q ss_pred EEEEE---CCCeEEEEECCCCcEE--EEccCCCCEEEEEEec-CCCEEEEEecCCcEE
Q 002591 849 LLVIG---CYQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVK 900 (903)
Q Consensus 849 l~t~s---~dg~I~vwdl~~~~~~--~~~~h~~~V~sl~~sp-dg~~LaSgs~DG~I~ 900 (903)
.++.+ .|-.|+|||++..-+- ++..|...|+.++|.. |...|.+++.||+|.
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 55544 3569999999876654 7889999999999965 456789999999874
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-22 Score=210.33 Aligned_cols=230 Identities=23% Similarity=0.380 Sum_probs=194.2
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCc
Q 002591 620 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 699 (903)
Q Consensus 620 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~ 699 (903)
++|...|.|++.++||+|||+|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....|++++.|++|++|+++. ..
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-~s 277 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-LS 277 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-hH
Confidence 48999999999999999999999999999999999999999999999999999999888999999999999999987 56
Q ss_pred eeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceeEEEecCCCEEEEEEcCCeEEEEE
Q 002591 700 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILD 776 (903)
Q Consensus 700 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~~~v~~sp~~~~ll~~s~dg~I~i~D 776 (903)
.+.++.+|.+.|..|..... .+++.+|+.|+++++|++.... ..+|.+ .+.+++|. +...|++|+.+|.|.+|+
T Consensus 278 ~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWS 354 (479)
T ss_pred HHHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEe-cccceeeccCCceEEEee
Confidence 68899999999999998765 4477678899999999995433 233333 34555655 447899999999999999
Q ss_pred CCCCeEEEEecC-C-----------CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC-cceEEEeecCCCceEEEEE
Q 002591 777 AETQACRLSLQG-H-----------TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-GECVHELSCNGNKFHSCVF 842 (903)
Q Consensus 777 ~~t~~~~~~l~~-h-----------~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~-~~~i~~~~~~~~~i~si~~ 842 (903)
+.+.+++++... | ..+|++++..|..+++++|+.+ .|++|-+..+-. ...+..+. -.+.|++++|
T Consensus 355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f 433 (479)
T KOG0299|consen 355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAF 433 (479)
T ss_pred ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEE
Confidence 999998887542 2 2389999999999999999998 999999987632 34555555 3678999999
Q ss_pred eCCCCEEEEEEC
Q 002591 843 HPTYPSLLVIGC 854 (903)
Q Consensus 843 sp~g~~l~t~s~ 854 (903)
+++|+.|++|..
T Consensus 434 ~~sgk~ivagiG 445 (479)
T KOG0299|consen 434 SNSGKRIVAGIG 445 (479)
T ss_pred ccCCCEEEEecc
Confidence 999997777744
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-24 Score=235.28 Aligned_cols=236 Identities=27% Similarity=0.476 Sum_probs=211.8
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 002591 617 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 696 (903)
Q Consensus 617 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~ 696 (903)
+.+-.|...|.|+..-..++.+++|+.|..+-||.+.....+..|.+|..+|.||.|+.+..+|++|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 44567999999999978889999999999999999988888888999999999999999999999999999999999997
Q ss_pred CCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEE
Q 002591 697 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 776 (903)
Q Consensus 697 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D 776 (903)
.+.++++.+|...+.++.|+|-+.+ +++++.|+.+++||++..-|.+.
T Consensus 102 -Ak~vrtLtgh~~~~~sv~f~P~~~~-~a~gStdtd~~iwD~Rk~Gc~~~------------------------------ 149 (825)
T KOG0267|consen 102 -AKIVRTLTGHLLNITSVDFHPYGEF-FASGSTDTDLKIWDIRKKGCSHT------------------------------ 149 (825)
T ss_pred -hhhhhhhhccccCcceeeeccceEE-eccccccccceehhhhccCceee------------------------------
Confidence 8889999999999999999999764 47899999999999886555444
Q ss_pred CCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECC
Q 002591 777 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 855 (903)
Q Consensus 777 ~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~d 855 (903)
+.+|...|.++.|+|+|++++.+++| +++|||+..+ +.+.++..|...+..+.|+|..-.++.|+.|
T Consensus 150 ---------~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d 217 (825)
T KOG0267|consen 150 ---------YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSD 217 (825)
T ss_pred ---------ecCCcceeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCCC
Confidence 34577889999999999999999998 9999999877 7888899999999999999999999999999
Q ss_pred CeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecC
Q 002591 856 QSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 896 (903)
Q Consensus 856 g~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~D 896 (903)
++|++||+++.+.+ ........|.+++|++++..+++|..+
T Consensus 218 ~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 218 RTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 99999999998888 555568899999999999999888654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-20 Score=202.62 Aligned_cols=263 Identities=13% Similarity=0.091 Sum_probs=194.8
Q ss_pred eeeeEeecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEE-eCCCcEEE
Q 002591 614 KEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRV 691 (903)
Q Consensus 614 ~~~~~l~~H~~~V~~l~fspdg~~L-atgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~I 691 (903)
+.+..+..|. .+.+++|+++++.+ ++++.++.|++||+.+++.+..+..+.. +..++|+|+++.++++ +.|+.|++
T Consensus 22 ~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 22 EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEE
Confidence 3455555554 47789999999876 5667889999999999888877765544 5788999999977655 56899999
Q ss_pred EeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCC-CcEEEEEcCCCeeeEEee--cCceeEEEecCCCEEEEEE-
Q 002591 692 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAA- 767 (903)
Q Consensus 692 WDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D-g~I~iwDi~t~~~~~~~~--~~~~~v~~sp~~~~ll~~s- 767 (903)
||+.+ ...+..+.. ...+.+++|+|++..++ +++.+ ..+.+||.++++...... .....+.|++++..+++++
T Consensus 100 ~d~~~-~~~~~~~~~-~~~~~~~~~~~dg~~l~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 100 IDIET-RKVLAEIPV-GVEPEGMAVSPDGKIVV-NTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EECCC-CeEEeEeeC-CCCcceEEECCCCCEEE-EEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC
Confidence 99987 555555542 34568899999987655 55544 467788999887765432 3456688999999886665
Q ss_pred cCCeEEEEECCCCeEEEEecCCC-----C--CeEEEEEcCCCCEEEEE-eCC-eEEEEECCCCCCcceEEEeecCCCceE
Q 002591 768 AENVVSILDAETQACRLSLQGHT-----K--PIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECVHELSCNGNKFH 838 (903)
Q Consensus 768 ~dg~I~i~D~~t~~~~~~l~~h~-----~--~V~sl~~spdg~~lasg-s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~ 838 (903)
.++.|++||+++++.+..+..+. . ....++|+|++++++++ +.+ .|.+||++++ +.+..+. +...+.
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~---~~~~~~~-~~~~~~ 252 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY---EVLDYLL-VGQRVW 252 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC---cEEEEEE-eCCCcc
Confidence 58999999999998777654321 1 23468899999975543 333 8999999875 3333332 345788
Q ss_pred EEEEeCCCCEEEEEE-CCCeEEEEECCCCcEEEEccCCCCEEEEEEec
Q 002591 839 SCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLTAHEGLIAALAVST 885 (903)
Q Consensus 839 si~~sp~g~~l~t~s-~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~sp 885 (903)
+++|+|++.+|+++. .++.|++||+.+++++.........+.++|+|
T Consensus 253 ~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 253 QLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred eEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 999999999998874 58999999999999874334456678888764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=195.46 Aligned_cols=281 Identities=22% Similarity=0.347 Sum_probs=218.4
Q ss_pred EeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc----------eeEE-----eccCCCCeEEEEECCC-CCEE
Q 002591 618 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLK----------SKTN-----LEEHSSLITDVRFSPS-MPRL 680 (903)
Q Consensus 618 ~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~V~vWd~~t~~----------~~~~-----l~~h~~~V~~l~fspd-g~~L 680 (903)
..+.|.+.|+++.+.+ .|+++++|+.||.|.|||++... .+.. -.+|...|.++.|-|- ...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3456999999999988 68899999999999999987422 0110 1368889999999885 4478
Q ss_pred EEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCC--CCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceeEE
Q 002591 681 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMR 755 (903)
Q Consensus 681 asgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~--~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~~~v~ 755 (903)
.+++.|.+++|||..+ ......|+ ..+.|++-+|+|- ...+|++|..|-.|++.|+.+|.+.+++.+ ++..+.
T Consensus 118 tssSFDhtlKVWDtnT-lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNT-LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccc-ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 8889999999999998 44555555 5677888888875 356888999999999999999999988876 577899
Q ss_pred EecCCCEEEE-EEcCCeEEEEECCCC-eEEEEec--------------CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002591 756 FQPHLGRYLA-AAAENVVSILDAETQ-ACRLSLQ--------------GHTKPIDSVCWDPSGELLASVSED-SVRVWTV 818 (903)
Q Consensus 756 ~sp~~~~ll~-~s~dg~I~i~D~~t~-~~~~~l~--------------~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl 818 (903)
|+|...++++ ++.||.|++||++.. .|...+. .|.+.|..++|..++.++++++.| .+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 9999987665 566999999999875 3444332 466789999999999999998888 9999999
Q ss_pred CCCCCcceEEEeecCCC----ceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEE
Q 002591 819 GSGSEGECVHELSCNGN----KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 893 (903)
Q Consensus 819 ~s~~~~~~i~~~~~~~~----~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSg 893 (903)
.++.....-..-..|.. .+. +. +-+...++..-.++.+.++++-++..+ .+..|...|.|.++.|+-..+.+|
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 88754221111111111 111 22 344555666667789999999998877 777899999999999999999999
Q ss_pred ecCCcEEEc
Q 002591 894 SHDKFVKLW 902 (903)
Q Consensus 894 s~DG~I~IW 902 (903)
..|+.|..|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999988
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-22 Score=202.56 Aligned_cols=256 Identities=20% Similarity=0.332 Sum_probs=213.8
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEe
Q 002591 637 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 716 (903)
Q Consensus 637 ~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~f 716 (903)
.|++.-.+++++ ...++.+.+|.+.|+.++-......+.+++.|.+.+||.+++ +.|+.++.||.+.|.+|+|
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYTGHTGSVNSIKF 198 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeecccccceeeEEe
Confidence 445555566543 356777899999999999988888999999999999999998 8999999999999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEEc------CCC--------e----------------------e----eEEeec---Ccee
Q 002591 717 HPNKDDLICSCDGDGEIRYWSI------NNG--------S----------------------C----TRVFKG---GTAQ 753 (903)
Q Consensus 717 sp~~~~ll~sgs~Dg~I~iwDi------~t~--------~----------------------~----~~~~~~---~~~~ 753 (903)
++.+. ++++++.|++..||.. ... + . +..+.+ .+.+
T Consensus 199 h~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 199 HNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 99755 6779999999999972 110 0 0 011222 2334
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec
Q 002591 754 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 832 (903)
Q Consensus 754 v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~ 832 (903)
..|...+..+++++.|.+..+||+++++++..+.+|....+.++-+|..+++++.+.| +.++||++ +....+..+.+
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQG 355 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQG 355 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecc
Confidence 4577778899999999999999999999999999999999999999999999999999 99999998 44677888999
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 833 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 833 ~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
|...|+++.|..+.+ +++++.|.+|+|||+++-+.. .....+++++.++++..+.+|+.--++..|+|||
T Consensus 356 HtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 356 HTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 999999999998765 899999999999999886643 4455678899999998888888888888899987
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-22 Score=217.28 Aligned_cols=274 Identities=23% Similarity=0.309 Sum_probs=208.7
Q ss_pred EEEEcC---CCCEEEEEeCCCcEEEEECCCCce------eEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 002591 628 CCHFSS---DGKLLATGGHDKKAVLWHTDTLKS------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 698 (903)
Q Consensus 628 ~l~fsp---dg~~Latgs~Dg~V~vWd~~t~~~------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~ 698 (903)
++.|++ ....||.+.+||.|.++|...... ++.+..|...|.++.|-|....|++++.|.+|++||++. .
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-s 132 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-S 132 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc-c
Confidence 356655 335899999999999999874322 345568999999999999777999999999999999997 5
Q ss_pred ceeEE--eccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeee-------E---Eeec-----------------
Q 002591 699 YSLRT--FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-------R---VFKG----------------- 749 (903)
Q Consensus 699 ~~~~~--~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~-------~---~~~~----------------- 749 (903)
.++.. +.+|...|.++||.+.+..+||+|+.||.|.|||++..... . .+++
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 56555 89999999999999999999999999999999999753300 0 0000
Q ss_pred ---Ccee---EEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEe--------cCC---CCCeEEEEEcCCCCEEEEEeCC
Q 002591 750 ---GTAQ---MRFQPHLGRYLAAAA-ENVVSILDAETQACRLSL--------QGH---TKPIDSVCWDPSGELLASVSED 811 (903)
Q Consensus 750 ---~~~~---v~~sp~~~~ll~~s~-dg~I~i~D~~t~~~~~~l--------~~h---~~~V~sl~~spdg~~lasgs~d 811 (903)
.+.. +.+..|...|++++. |+.|+|||+++....... ..| .-.+.+++.+..|.+|++.+.|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 1112 456677788888877 999999999987554432 223 2357788888888877666667
Q ss_pred -eEEEEECCCCCCcceEEEeecCCC--ceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE--EEccCCCCEEEEEEecC
Q 002591 812 -SVRVWTVGSGSEGECVHELSCNGN--KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTE 886 (903)
Q Consensus 812 -~I~iwdl~s~~~~~~i~~~~~~~~--~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~--~~~~h~~~V~sl~~spd 886 (903)
.|++|++.+... ..+..+.++.. ....-..+|++.+|++|+.|...++|.+...+.- .+.+|.-.|++++|.|.
T Consensus 293 ~sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 293 NSIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred CcEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 999999987532 23333333222 2233357899999999999999999999887654 77899999999999874
Q ss_pred C-CEEEEEecCCcEEEcC
Q 002591 887 T-GYVASASHDKFVKLWK 903 (903)
Q Consensus 887 g-~~LaSgs~DG~I~IWd 903 (903)
. .-++++++|-.++||+
T Consensus 372 ~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 372 ATTPVATCSDDFRVKIWR 389 (720)
T ss_pred cCCCceeeccCcceEEEe
Confidence 3 3477889999999996
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-21 Score=212.81 Aligned_cols=283 Identities=20% Similarity=0.297 Sum_probs=222.0
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEE-----eccCCCCeEEEEECCCCCEEEEEeCCCcE
Q 002591 617 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTN-----LEEHSSLITDVRFSPSMPRLATSSFDKTV 689 (903)
Q Consensus 617 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~--~~~~~-----l~~h~~~V~~l~fspdg~~Lasgs~Dg~I 689 (903)
..+.||.+-|+++.|+|.+..|++++.|+++.||.-++. -=+.. ..+........-|++++..+++-+..|..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 345599999999999999999999999999999986643 22222 22345668999999999999999999999
Q ss_pred EEEeCCCCCc--eeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEe------ecCceeEEEecCC
Q 002591 690 RVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVF------KGGTAQMRFQPHL 760 (903)
Q Consensus 690 ~IWDl~~~~~--~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~-~~~~~------~~~~~~v~~sp~~ 760 (903)
++|...+... ....+.||.+.|.+++|+|.|+++| +.+.|-+-|+|-.-..+ .-..+ -....++++-+..
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~ 419 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED 419 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence 9998443222 2345679999999999999988665 88899999998655111 11111 1235566676666
Q ss_pred CEEEEEEcCCeEEEEECCC-------------------------------------------CeE---------------
Q 002591 761 GRYLAAAAENVVSILDAET-------------------------------------------QAC--------------- 782 (903)
Q Consensus 761 ~~ll~~s~dg~I~i~D~~t-------------------------------------------~~~--------------- 782 (903)
-.|+.++.+..+++|+... +..
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence 6777777777888876421 000
Q ss_pred ------------------EEEecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeecCCCceE
Q 002591 783 ------------------RLSLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFH 838 (903)
Q Consensus 783 ------------------~~~l~~h~~~V~sl~~spdg~~lasgs~d------~I~iwdl~s~~~~~~i~~~~~~~~~i~ 838 (903)
+.++.+|...|.+++.+|+++++|+++.. .|++|+..+. ..+..+..|.-.|+
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVT 576 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEE
Confidence 01246788899999999999999998854 5999998776 45567888999999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCcEE-----EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 839 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 839 si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-----~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.++|+||+++|++++.|+++.+|...+.... ....|..-|+++.|+|++.+|+|+|.|.+|+||.
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 9999999999999999999999988655433 4678999999999999999999999999999994
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-22 Score=213.93 Aligned_cols=259 Identities=17% Similarity=0.291 Sum_probs=215.6
Q ss_pred cCCCCcccccccCcceeeeeEeec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEeccCCCCeEEEEE
Q 002591 598 RDAGGRGMDVSQGFSFKEANSVRA--STSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRF 673 (903)
Q Consensus 598 ~~~~~~~~d~~~~~~~~~~~~l~~--H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~--t~~~~~~l~~h~~~V~~l~f 673 (903)
..+.+++||+...-...++..+.. ....|++|.+.+||+.|++|++-.+|.|||+. +......+....-.+.+++.
T Consensus 438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~ 517 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 517 (705)
T ss_pred CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc
Confidence 344567788876544455555443 45679999999999999999999999999987 44445555555667889999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeE--EeecCc
Q 002591 674 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFKGGT 751 (903)
Q Consensus 674 spdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~--~~~~~~ 751 (903)
+||.+.+++++.||.|+|||+.+ ...++.|.+|.+.+.||.++++|.++. ||+-|.+||.||+++++.+. .|...+
T Consensus 518 spDakvcFsccsdGnI~vwDLhn-q~~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF~SQI 595 (705)
T KOG0639|consen 518 SPDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDFSSQI 595 (705)
T ss_pred CCccceeeeeccCCcEEEEEccc-ceeeecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhhhhhh
Confidence 99999999999999999999998 788999999999999999999987665 99999999999999988654 566778
Q ss_pred eeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe
Q 002591 752 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 830 (903)
Q Consensus 752 ~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~ 830 (903)
.++.++|.+.++++|-..+.|.|....... .+.+.-|++.|.++.|.+.|+++++.+.| .+..|..--+ ..+...
T Consensus 596 fSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFqs 671 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQS 671 (705)
T ss_pred eecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceeec
Confidence 889999999999999999999998876543 44566699999999999999999999998 8999998766 333333
Q ss_pred ecCCCceEEEEEeCCCCEEEEEECCCeEEEEEC
Q 002591 831 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 863 (903)
Q Consensus 831 ~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl 863 (903)
+. ...|.+|.++.|.++|++|+.|+...||.+
T Consensus 672 kE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 672 KE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 32 668999999999999999999998888865
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-20 Score=198.31 Aligned_cols=289 Identities=16% Similarity=0.193 Sum_probs=218.9
Q ss_pred CCCcccccccCcceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE---eccC-CCCeEEEEECC
Q 002591 600 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN---LEEH-SSLITDVRFSP 675 (903)
Q Consensus 600 ~~~~~~d~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~---l~~h-~~~V~~l~fsp 675 (903)
...-+|++.++...-++ +...+.|..+.|+|.+..|+.....+.+.+|+.+.+...++ ++.+ ...|.|++|.+
T Consensus 180 h~lSVWdWqk~~~~~~v---k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e 256 (626)
T KOG2106|consen 180 HMLSVWDWQKKAKLGPV---KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE 256 (626)
T ss_pred cccchhhchhhhccCcc---eeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcC
Confidence 34456777766444443 44577899999999776555555678999999987765554 3332 36799999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCee-----------e
Q 002591 676 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-----------T 744 (903)
Q Consensus 676 dg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~-----------~ 744 (903)
+| -+++|..+|.|.||+..+ .+..+....|.+.|.+++...+|. ++ +|+.|..|..||-.-.+. +
T Consensus 257 ng-dviTgDS~G~i~Iw~~~~-~~~~k~~~aH~ggv~~L~~lr~Gt-ll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~i 332 (626)
T KOG2106|consen 257 NG-DVITGDSGGNILIWSKGT-NRISKQVHAHDGGVFSLCMLRDGT-LL-SGGKDRKIILWDDNYRKLRETELPEQFGPI 332 (626)
T ss_pred CC-CEEeecCCceEEEEeCCC-ceEEeEeeecCCceEEEEEecCcc-Ee-ecCccceEEeccccccccccccCchhcCCe
Confidence 88 577999999999999987 555565559999999999998864 44 799999999999321110 1
Q ss_pred EEe-e--------------------c-----------CceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC
Q 002591 745 RVF-K--------------------G-----------GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP 792 (903)
Q Consensus 745 ~~~-~--------------------~-----------~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~ 792 (903)
+++ + . ..-.++.+|..+.+++++.|+.+++|+ ..+++.+.. ...+
T Consensus 333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~ 409 (626)
T KOG2106|consen 333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDP 409 (626)
T ss_pred eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCc
Confidence 110 0 0 112356778889999999999999999 444444333 4578
Q ss_pred eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE--
Q 002591 793 IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-- 869 (903)
Q Consensus 793 V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-- 869 (903)
+.|+.|+|.| .++.|... ...+.|.++. ..+..... ..++..+.|+|+|.+|++|+.|+.|+||.+..+...
T Consensus 410 ~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 410 AECADFHPSG-VVAVGTATGRWFVLDTETQ---DLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred eeEeeccCcc-eEEEeeccceEEEEecccc---eeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE
Confidence 9999999999 88888777 8889998773 34444444 888999999999999999999999999998765433
Q ss_pred EE-ccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 870 TL-TAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 870 ~~-~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.. .-+..+|+.+.|++|+.+|.+-+-|-.|..|+
T Consensus 485 r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 485 RVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 22 23448999999999999999999999999984
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-21 Score=217.31 Aligned_cols=274 Identities=14% Similarity=0.242 Sum_probs=215.1
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 002591 620 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 698 (903)
Q Consensus 620 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~ 698 (903)
.+|+..-+.|+|.++|++|++++.||.|++|+.... +.-.++..+...|.+++...+ +|++|+.+++|.+|.+.+ +
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~--~f~~~s~~~tv~~y~fps-~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN--HFLTGSEQNTVLRYKFPS-G 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc--ceEEeeccceEEEeeCCC-C
Confidence 369999999999999999999999999999997655 444455558888888887544 999999999999999987 4
Q ss_pred ceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceeEEEecCCCEEEEEEcCCeEEEE
Q 002591 699 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSIL 775 (903)
Q Consensus 699 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~---~~~~~~v~~sp~~~~ll~~s~dg~I~i~ 775 (903)
..-..+...+-++.+++|+.+|. +++.|+.|-.|++.+.......+++ ++.+.++.|+|.++.+++.+.||.|+||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CccceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 44445555667899999998876 5568999999999999887655554 5678899999999999999999999999
Q ss_pred ECCCCeEEEEecCC--------CCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 002591 776 DAETQACRLSLQGH--------TKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 846 (903)
Q Consensus 776 D~~t~~~~~~l~~h--------~~~V~sl~~spdg~-~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g 846 (903)
|+.++.+..++.+- ...+..++|+|++. +++.+.++.|++|+.........+. .+.+...+..+.|+|+|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr-~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR-DKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec-ccccccceEEEEEcCCC
Confidence 99999887766531 34567789999965 5555555599999998774322222 22234458999999999
Q ss_pred CEEEEEECCCeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecCCcEEE
Q 002591 847 PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 901 (903)
Q Consensus 847 ~~l~t~s~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~I 901 (903)
.||++++.+|.|.|||+.+-+. ......|++++|.|+..-|-.-..-|...+
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 9999999999999999998222 344568999999998876554444444433
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=207.77 Aligned_cols=228 Identities=21% Similarity=0.269 Sum_probs=196.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC-----
Q 002591 622 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN----- 696 (903)
Q Consensus 622 H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~----- 696 (903)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+.||.+|++|+.||.|.+|++..
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 367899999999999999998999999999999999999999999999999999999999999999999998742
Q ss_pred ---CCceeEEeccCCCceEEEEecCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceeEEEecCCCEEEEEEcCC
Q 002591 697 ---PGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAEN 770 (903)
Q Consensus 697 ---~~~~~~~~~~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwDi~t~~~~~~~--~~~~~~v~~sp~~~~ll~~s~dg 770 (903)
.-++++.|..|+-+|+++...+.+ +..++|++.|.+|++||+..+..+..+ ...+.++..+|.+..+++|+.+|
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcc
Confidence 235688999999999999987652 335669999999999999999987654 45778999999999999999999
Q ss_pred eEEEEECCCC----------------eEEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee
Q 002591 771 VVSILDAETQ----------------ACRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 831 (903)
Q Consensus 771 ~I~i~D~~t~----------------~~~~~l~~h~~--~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~ 831 (903)
.|.+.++... ..+..+.+|.. .|+|++++-||.+|++|+.| .|+|||+.+. .+++.+.
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~---Q~iRtl~ 316 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK---QCIRTLQ 316 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH---HHHHHHh
Confidence 9999876542 34556778888 99999999999999999999 9999999876 6777666
Q ss_pred cCCCceEEEEEeCCCCEEEEE
Q 002591 832 CNGNKFHSCVFHPTYPSLLVI 852 (903)
Q Consensus 832 ~~~~~i~si~~sp~g~~l~t~ 852 (903)
...++|+.+.+.|-.+.++.+
T Consensus 317 ~~kgpVtnL~i~~~~~~~~l~ 337 (476)
T KOG0646|consen 317 TSKGPVTNLQINPLERGIILF 337 (476)
T ss_pred hhccccceeEeeccccceecc
Confidence 567888888887765544443
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-19 Score=202.44 Aligned_cols=353 Identities=14% Similarity=0.170 Sum_probs=243.1
Q ss_pred ceEEEEeCCCcee---ccCCCeeeeCCcchhhhhhccccccCCCCCceEEeeec-CCCCCcCCCCcccccccCcceeeee
Q 002591 542 PLMMFGTDGAGTL---TSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSH-DDTDPRDAGGRGMDVSQGFSFKEAN 617 (903)
Q Consensus 542 ~~i~~s~dg~~~~---~~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~-d~~~~~~~~~~~~d~~~~~~~~~~~ 617 (903)
.+++|+.+..-++ +++.++||++...=+ ....-.|..|..++..+.. .......+....+..++.++++.+.
T Consensus 29 ~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~----~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 29 VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF----LEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKY 104 (691)
T ss_pred EEEEEeccCCceeeeccCCcEEEEccCCCce----eeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeE
Confidence 3455555544332 377889999987422 2223345677888876544 3333333333333444445778888
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE--EeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 002591 618 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 695 (903)
Q Consensus 618 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~ 695 (903)
.+....+.|++++.+|.++.++.|++||.+++++...++... .|...++.|.+|+|++++..|++|+.||.|++||+.
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 888999999999999999999999999988888877665543 344567899999999999999999999999999998
Q ss_pred CCCceeE------Eec-cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceeEEEecCCCEEEE
Q 002591 696 NPGYSLR------TFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLA 765 (903)
Q Consensus 696 ~~~~~~~------~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~---~~~~~~v~~sp~~~~ll~ 765 (903)
....... .+. +...-|+++.|..++ .|++|+..|+|.+||...+..+..+ ..++.+++..++++.+++
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfs 262 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFS 262 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEE
Confidence 7433220 111 134468888888654 6779999999999999999877655 467889999999999999
Q ss_pred EEcCCeEEEEECCCCeE----EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC--------------------
Q 002591 766 AAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS-------------------- 820 (903)
Q Consensus 766 ~s~dg~I~i~D~~t~~~----~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s-------------------- 820 (903)
++.|+.|..|...+.+. ......|...|.+++..++ .+++|+.| .+.+-..+.
T Consensus 263 aGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~ 340 (691)
T KOG2048|consen 263 AGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSV 340 (691)
T ss_pred ccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeec
Confidence 99999999888776633 2223457788888887754 66666666 444433322
Q ss_pred ----------------------C------CCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCC-------
Q 002591 821 ----------------------G------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE------- 865 (903)
Q Consensus 821 ----------------------~------~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~------- 865 (903)
. .....++........|.+.+.+|+|..|+.+... .++||.+..
T Consensus 341 a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~ 419 (691)
T KOG2048|consen 341 APENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVI 419 (691)
T ss_pred CccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEE
Confidence 1 0001111122224457888999999988877621 122222211
Q ss_pred -----------------------------------------CcEE-----EEccCCCCEEEEEEecCCCEEEEEecCCcE
Q 002591 866 -----------------------------------------NKTM-----TLTAHEGLIAALAVSTETGYVASASHDKFV 899 (903)
Q Consensus 866 -----------------------------------------~~~~-----~~~~h~~~V~sl~~spdg~~LaSgs~DG~I 899 (903)
.... .-.+....|+.+..+++|.|||+.+.+|.|
T Consensus 420 ~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I 499 (691)
T KOG2048|consen 420 NVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQI 499 (691)
T ss_pred EeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceE
Confidence 1000 001234678999999999999999999999
Q ss_pred EEcC
Q 002591 900 KLWK 903 (903)
Q Consensus 900 ~IWd 903 (903)
.+|+
T Consensus 500 ~v~n 503 (691)
T KOG2048|consen 500 FVYN 503 (691)
T ss_pred EEEE
Confidence 9996
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-20 Score=204.10 Aligned_cols=275 Identities=15% Similarity=0.227 Sum_probs=226.7
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEeccC-CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 002591 619 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDADN 696 (903)
Q Consensus 619 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t-~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~ 696 (903)
+.--...|+|+||+.+.+.||.+-.||.|.||++.. .-+...+.++ ...|.+|+|+ ++..|++.+.+|.|.-||+.+
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc
Confidence 334567899999999999999999999999999884 4556667665 4679999999 556888899999999999998
Q ss_pred CCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-----ecCceeEEEecCCCEEEEEEcCCe
Q 002591 697 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQMRFQPHLGRYLAAAAENV 771 (903)
Q Consensus 697 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~-----~~~~~~v~~sp~~~~ll~~s~dg~ 771 (903)
.+....+....+.|++++.+|.+. .++.|++||.++++++..++..... ++.+.++.|.+++.+++.|+.||.
T Consensus 100 -lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 100 -LKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV 177 (691)
T ss_pred -CceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence 778888888899999999999876 5558888998888888888755432 356788999999999999999999
Q ss_pred EEEEECCCCeEEEEec-------C-CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEe
Q 002591 772 VSILDAETQACRLSLQ-------G-HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 843 (903)
Q Consensus 772 I~i~D~~t~~~~~~l~-------~-h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~s 843 (903)
|++||+.++..++... . ...-|+++.|-.++.++..-+.++|.+||...+ ..+..+.+|...|.+++..
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl~Lav~ 254 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG---TLIQSHSCHDADVLALAVA 254 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc---chhhhhhhhhcceeEEEEc
Confidence 9999999997766221 1 233478888886655444444559999999877 6778888899999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCcE--E---EEccCCCCEEEEEEecCCCEEEEEecCCcEEE
Q 002591 844 PTYPSLLVIGCYQSLELWNMSENKT--M---TLTAHEGLIAALAVSTETGYVASASHDKFVKL 901 (903)
Q Consensus 844 p~g~~l~t~s~dg~I~vwdl~~~~~--~---~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~I 901 (903)
++++++++++.|+.|..|...+++. + ....|...|.+++..++ .|++|+.|..+.+
T Consensus 255 ~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 255 DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 9999999999999999998877744 1 45578999999999877 8999999998865
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=202.50 Aligned_cols=216 Identities=20% Similarity=0.390 Sum_probs=181.2
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-------ceeEEeccCCCCeEEEEECCCC-CEEEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLAT 682 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~V~vWd~~t~-------~~~~~l~~h~~~V~~l~fspdg-~~Las 682 (903)
.+.+-.+|++|.+.-+.++|++.-. +|++|+.|++|++||+... .....+.+|...|.+++|++-. .+|++
T Consensus 166 ~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~s 245 (422)
T KOG0264|consen 166 ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGS 245 (422)
T ss_pred cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhee
Confidence 3455668899999889999998543 8999999999999998732 3456688999999999999864 47888
Q ss_pred EeCCCcEEEEeCCC-CCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCC
Q 002591 683 SSFDKTVRVWDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG 761 (903)
Q Consensus 683 gs~Dg~I~IWDl~~-~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~ 761 (903)
++.|+.+.|||+++ ..++.....+|...|.|++|+|.+..+||||+.|++|++||+|+..
T Consensus 246 v~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~------------------- 306 (422)
T KOG0264|consen 246 VGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN------------------- 306 (422)
T ss_pred ecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-------------------
Confidence 99999999999995 3667788889999999999999999999999999999999998653
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCC-----------CcceEE
Q 002591 762 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGS-----------EGECVH 828 (903)
Q Consensus 762 ~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~-~lasgs~d-~I~iwdl~s~~-----------~~~~i~ 828 (903)
++++++.+|...|.+|.|+|... +|++++.| .+.|||+..-. ..+.+.
T Consensus 307 -------------------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF 367 (422)
T KOG0264|consen 307 -------------------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLF 367 (422)
T ss_pred -------------------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeE
Confidence 24556788999999999999765 88888888 99999997542 234567
Q ss_pred EeecCCCceEEEEEeCCCCEEE-EEECCCeEEEEECCC
Q 002591 829 ELSCNGNKFHSCVFHPTYPSLL-VIGCYQSLELWNMSE 865 (903)
Q Consensus 829 ~~~~~~~~i~si~~sp~g~~l~-t~s~dg~I~vwdl~~ 865 (903)
...+|...|..+.|+|+...++ +++.|+.+.||.+..
T Consensus 368 ~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 368 IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 7788999999999999988754 567788999999864
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=213.82 Aligned_cols=238 Identities=17% Similarity=0.269 Sum_probs=202.2
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe
Q 002591 663 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 742 (903)
Q Consensus 663 ~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~ 742 (903)
.|....+.|+|.++|++|++++.||.|++|+..+....-.++..+...|.+++...+ .|++|+.+++|.+|.+..+.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCCC
Confidence 688889999999999999999999999999987753444455557888888887633 56699999999999998765
Q ss_pred ---eeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002591 743 ---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 818 (903)
Q Consensus 743 ---~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl 818 (903)
.+..|..+..+++++.+|..+++|+.|-.|++.++.+......+++|..+|.+|.|+|.+++||+.+.| .|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 567788899999999999999999999999999999999999999999999999999999999999888 9999999
Q ss_pred CCCCCcceEEEeec----C-CCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EE--ccCCCCEEEEEEecCCCEE
Q 002591 819 GSGSEGECVHELSC----N-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL--TAHEGLIAALAVSTETGYV 890 (903)
Q Consensus 819 ~s~~~~~~i~~~~~----~-~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~--~~h~~~V~sl~~spdg~~L 890 (903)
.++.....+..+.. . ...+..++|+|++..|++.+.|+.|++|+..+.+.. .+ ..+...+.++.|+|+|+||
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 88743322222111 1 334677899999999999999999999999998876 33 3345559999999999999
Q ss_pred EEEecCCcEEEcC
Q 002591 891 ASASHDKFVKLWK 903 (903)
Q Consensus 891 aSgs~DG~I~IWd 903 (903)
|+++.||.|.|||
T Consensus 248 AAs~~~g~I~vWn 260 (933)
T KOG1274|consen 248 AASTLDGQILVWN 260 (933)
T ss_pred eeeccCCcEEEEe
Confidence 9999999999997
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-20 Score=188.76 Aligned_cols=223 Identities=18% Similarity=0.316 Sum_probs=183.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCcee
Q 002591 622 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 701 (903)
Q Consensus 622 H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~ 701 (903)
|..++.+++|.++ ..+++|+.||.|+++|+.++. ...+-.|...|.||.+++....+++|++|++|++||.+. ....
T Consensus 53 ~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~-~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~~ 129 (323)
T KOG1036|consen 53 HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN-EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVVV 129 (323)
T ss_pred cCCceeeeeccCC-ceEEEeccCceEEEEEecCCc-ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-cccc
Confidence 7889999999874 478999999999999998765 445668999999999999989999999999999999996 4444
Q ss_pred EEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeee-----EEeecCceeEEEecCCCEEEEEEcCCeEEEEE
Q 002591 702 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-----RVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 776 (903)
Q Consensus 702 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~-----~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D 776 (903)
..+. ....|.++... ++ .|++|..|..|.+||+++.... ..++-.+.++++.|.+.-+++++-||.|.+=.
T Consensus 130 ~~~d-~~kkVy~~~v~--g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~ 205 (323)
T KOG1036|consen 130 GTFD-QGKKVYCMDVS--GN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEY 205 (323)
T ss_pred cccc-cCceEEEEecc--CC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEc
Confidence 4444 34489999886 33 4557888999999999986532 34566788999999888999999999998876
Q ss_pred CCCC----eEEEEecCCCC---------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEE
Q 002591 777 AETQ----ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 842 (903)
Q Consensus 777 ~~t~----~~~~~l~~h~~---------~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~ 842 (903)
++.. +..+.|+.|.. +|++|+|+|-...|+||+.| .|.+||+.+. +.+..+......|.+++|
T Consensus 206 ~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~slsf 282 (323)
T KOG1036|consen 206 FDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLSF 282 (323)
T ss_pred cCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEEe
Confidence 6655 55666777753 69999999998899999999 9999999877 445555555678999999
Q ss_pred eCCCCEEEEEEC
Q 002591 843 HPTYPSLLVIGC 854 (903)
Q Consensus 843 sp~g~~l~t~s~ 854 (903)
+.+|..||+++.
T Consensus 283 s~dG~~LAia~s 294 (323)
T KOG1036|consen 283 SMDGSLLAIASS 294 (323)
T ss_pred ccCCCeEEEEec
Confidence 999999999875
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=199.68 Aligned_cols=292 Identities=17% Similarity=0.284 Sum_probs=216.0
Q ss_pred CcceeeeeEeecCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECC----CCceeEEeccCCCCeEEEEECCCCC-EEEE
Q 002591 610 GFSFKEANSVRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSMP-RLAT 682 (903)
Q Consensus 610 ~~~~~~~~~l~~H~~~V~~l~fspdg--~~Latgs~Dg~V~vWd~~----t~~~~~~l~~h~~~V~~l~fspdg~-~Las 682 (903)
...+.....++-|.++|+|++|+|.. +++|+|..-|.|-+||+. ....+..+..|..+|.+|.|+|... .+++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 34667777888999999999999965 488999999999999994 3345667889999999999999654 7999
Q ss_pred EeCCCcEEEEeCCCCC-ceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCee----eEEeecCceeEEEe
Q 002591 683 SSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQ 757 (903)
Q Consensus 683 gs~Dg~I~IWDl~~~~-~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~----~~~~~~~~~~v~~s 757 (903)
.|+||+|++-|+++.- ..+..+......+.++.|+.+...++ .++.=|...+||.+++.. ++..+..+..++++
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 9999999999998621 12223333445677788887766665 666667999999998653 33444578889999
Q ss_pred cCCCE-EEEEEcCCeEEEEECCCCe----EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-CCcceEEEe
Q 002591 758 PHLGR-YLAAAAENVVSILDAETQA----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHEL 830 (903)
Q Consensus 758 p~~~~-ll~~s~dg~I~i~D~~t~~----~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~-~~~~~i~~~ 830 (903)
|-..+ +++++.|++++|||++... ++.....|...|.+++|+|++-.|++.+.| .|+|||..-. ........+
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence 98865 5566779999999998642 234445699999999999987778888888 9999998411 111111111
Q ss_pred e---cCCC--ceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCC-CCEEEE-EEecCCC-EEEEEecCCcEEE
Q 002591 831 S---CNGN--KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE-GLIAAL-AVSTETG-YVASASHDKFVKL 901 (903)
Q Consensus 831 ~---~~~~--~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~-~~V~sl-~~spdg~-~LaSgs~DG~I~I 901 (903)
. .+.. .....+|.|+..+|+++-.-..|.|||-..++.+ .+.... ..|.++ .|+|-+. +++.++..|.|+|
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 1 1111 2345689999999999999999999999998865 433332 255554 8899887 4555556888998
Q ss_pred c
Q 002591 902 W 902 (903)
Q Consensus 902 W 902 (903)
|
T Consensus 492 f 492 (498)
T KOG4328|consen 492 F 492 (498)
T ss_pred E
Confidence 8
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=196.68 Aligned_cols=245 Identities=22% Similarity=0.438 Sum_probs=196.6
Q ss_pred ecCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCC----------------CceeEEeccCCCCeEEEEECCCCC-EE
Q 002591 620 RASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTDT----------------LKSKTNLEEHSSLITDVRFSPSMP-RL 680 (903)
Q Consensus 620 ~~H~~~V~~l~fspdg--~~Latgs~Dg~V~vWd~~t----------------~~~~~~l~~h~~~V~~l~fspdg~-~L 680 (903)
-.|.+.|+.+..++-+ .+.|+-+..|.|.|||+.. .+++.++.+|...-..|+|||-.. .|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3688888888887755 4666677889999999742 356788899999999999999433 58
Q ss_pred EEEeCCCcEEEEeCCCCCcee--EEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEec
Q 002591 681 ATSSFDKTVRVWDADNPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQP 758 (903)
Q Consensus 681 asgs~Dg~I~IWDl~~~~~~~--~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp 758 (903)
++|..-+.|++|...++...+ +.|.+|+..|-.|+|+|....+|++|+.||+|+|||++.+....
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~------------- 294 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA------------- 294 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc-------------
Confidence 888888899999998754433 46778999999999999999999999999999999999874211
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCce
Q 002591 759 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 837 (903)
Q Consensus 759 ~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i 837 (903)
++ ..+.|.+.|+.|.|+.+..+|++|++| +++|||++..+....+..++-|..+|
T Consensus 295 -----------------------~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI 350 (440)
T KOG0302|consen 295 -----------------------AV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI 350 (440)
T ss_pred -----------------------ee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence 11 125688999999999988899999999 99999999988888999999999999
Q ss_pred EEEEEeCC-CCEEEEEECCCeEEEEECCCCcE-----------------EEEccC--CCCEEEEEEecC-CCEEEEEecC
Q 002591 838 HSCVFHPT-YPSLLVIGCYQSLELWNMSENKT-----------------MTLTAH--EGLIAALAVSTE-TGYVASASHD 896 (903)
Q Consensus 838 ~si~~sp~-g~~l~t~s~dg~I~vwdl~~~~~-----------------~~~~~h--~~~V~sl~~spd-g~~LaSgs~D 896 (903)
+++.|+|. ...|++++.|..|.|||+....- ..+..| ...|..+.|++. -.+|++.+.|
T Consensus 351 tsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~d 430 (440)
T KOG0302|consen 351 TSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAID 430 (440)
T ss_pred eEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccc
Confidence 99999995 45678888999999999864321 022234 456888999874 3588888889
Q ss_pred CcEEEc
Q 002591 897 KFVKLW 902 (903)
Q Consensus 897 G~I~IW 902 (903)
|. .||
T Consensus 431 Gf-nVf 435 (440)
T KOG0302|consen 431 GF-NVF 435 (440)
T ss_pred ce-eEE
Confidence 84 344
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.8e-21 Score=202.69 Aligned_cols=257 Identities=17% Similarity=0.248 Sum_probs=202.6
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCcEEEEECCC--CceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCcee
Q 002591 625 KVICCHFSSDGK-LLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 701 (903)
Q Consensus 625 ~V~~l~fspdg~-~Latgs~Dg~V~vWd~~t--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~ 701 (903)
.|.+++|+.... .+|+.+.|+.|++|.-.. ++.-..-+...+.-.||+......|+++|+..++|+|||++. ..+.
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~h 114 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRA-KLIH 114 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHH-HHHh
Confidence 499999988764 333445788899997432 222222122222344555555558999999999999999996 7788
Q ss_pred EEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC----ceeEEEecCCCEEEE-EEcCCeEEEEE
Q 002591 702 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRYLA-AAAENVVSILD 776 (903)
Q Consensus 702 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~----~~~v~~sp~~~~ll~-~s~dg~I~i~D 776 (903)
+.+++|.+.|+++.|..... +||+++..|.|.|..+.++.....|..+ +.-+.|++....++. ++.+|.|.+||
T Consensus 115 r~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred hhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 99999999999999987744 6779999999999999998877777643 345788988876655 55679999999
Q ss_pred CCCCeEEEEe-cCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 002591 777 AETQACRLSL-QGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 853 (903)
Q Consensus 777 ~~t~~~~~~l-~~h~~~V~sl~~spdg~-~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s 853 (903)
+....+++.+ +.|..+...|||+|... +|++.+.| .|.+||++......++.. ..++.+++|.++|.+|++|.
T Consensus 194 v~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 194 VQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY----SHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred ccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee----cCCcceeeecCCceEEEeec
Confidence 9988777655 46999999999999665 88899999 999999997654444443 77899999999999999999
Q ss_pred CCCeEEEEECCCCcEE--EEccCCCCEEEEEEecCC
Q 002591 854 CYQSLELWNMSENKTM--TLTAHEGLIAALAVSTET 887 (903)
Q Consensus 854 ~dg~I~vwdl~~~~~~--~~~~h~~~V~sl~~spdg 887 (903)
..|.|+.||++..+.- .+.+|...|++++|-+.-
T Consensus 270 s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 270 SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999999877643 778999999999997754
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=199.58 Aligned_cols=232 Identities=17% Similarity=0.254 Sum_probs=189.0
Q ss_pred CEEEEEeC-CCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEE
Q 002591 636 KLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 714 (903)
Q Consensus 636 ~~Latgs~-Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl 714 (903)
.+++++.. ...|.+|.+...........-.+.|.|+.-+|+|.+|+.|...|.|++|.+.+ +..+..+.+|-..|+||
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~aHYQ~ITcL 129 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVLSAHYQSITCL 129 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHHHhhccceeEE
Confidence 46666654 34789999876555554445677899999999999999999999999999998 88888999999999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeE
Q 002591 715 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPID 794 (903)
Q Consensus 715 ~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~ 794 (903)
.|+.|+..+| ||+.||.|.+|++..- +.+..++ +-++++.+..|.-+|+
T Consensus 130 ~fs~dgs~ii-TgskDg~V~vW~l~~l----------------------v~a~~~~--------~~~p~~~f~~HtlsIT 178 (476)
T KOG0646|consen 130 KFSDDGSHII-TGSKDGAVLVWLLTDL----------------------VSADNDH--------SVKPLHIFSDHTLSIT 178 (476)
T ss_pred EEeCCCcEEE-ecCCCccEEEEEEEee----------------------cccccCC--------CccceeeeccCcceeE
Confidence 9999987555 9999999999986421 1111121 3467778888999999
Q ss_pred EEEEcCCC--CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCc----
Q 002591 795 SVCWDPSG--ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK---- 867 (903)
Q Consensus 795 sl~~spdg--~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~---- 867 (903)
.+...+.| .+|++++.| ++++||+..+ ..+..+.. ...+.+|+.+|.++.+++|+.+|.|.+.++....
T Consensus 179 Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 179 DLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA 254 (476)
T ss_pred EEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc
Confidence 99988754 389999999 9999999887 44443332 7789999999999999999999999988875322
Q ss_pred -------------EEEEccCCC--CEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 868 -------------TMTLTAHEG--LIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 868 -------------~~~~~~h~~--~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
...+.+|.+ .|+|++++-||.+|++|+.||.|+|||
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 125678888 999999999999999999999999997
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=199.38 Aligned_cols=241 Identities=22% Similarity=0.421 Sum_probs=191.3
Q ss_pred EEEEEcC-------CCCEEEEEeCCCcEEEEECCC---CceeEE------------------eccCCCCeEEEEECCCCC
Q 002591 627 ICCHFSS-------DGKLLATGGHDKKAVLWHTDT---LKSKTN------------------LEEHSSLITDVRFSPSMP 678 (903)
Q Consensus 627 ~~l~fsp-------dg~~Latgs~Dg~V~vWd~~t---~~~~~~------------------l~~h~~~V~~l~fspdg~ 678 (903)
.|++|.. .|+++|.|+.|..|.|||++- -.+..+ -.+|++.|.++.|+.+-+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5777743 357999999999999999752 111111 236999999999988754
Q ss_pred -EEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCC---CeeeEEeecCceeE
Q 002591 679 -RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRVFKGGTAQM 754 (903)
Q Consensus 679 -~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t---~~~~~~~~~~~~~v 754 (903)
.||+||.|.+|++||+.+ +++..++..|...|.++.|+|....+|++|+.|++|.+.|.+. ......+.+.+..+
T Consensus 257 nVLaSgsaD~TV~lWD~~~-g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDT-GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred eeEEecCCCceEEEEEcCC-CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 789999999999999998 8899999999999999999999999999999999999999994 33445677889999
Q ss_pred EEecCCC-EEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEe
Q 002591 755 RFQPHLG-RYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHEL 830 (903)
Q Consensus 755 ~~sp~~~-~ll~~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~-~lasgs~d-~I~iwdl~s~~~~~~i~~~ 830 (903)
.|.+... .++++..||+|+-+|+|.. +++.++..|..+|.+|+++..-. ++++++.+ .|++|++..... +.+...
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~ 414 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEH 414 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccc
Confidence 9999874 5666777899999999986 99999999999999999998554 78888888 999999975422 222222
Q ss_pred ecCCCceEEEEEeCCCCE-EEEEECCCeEEEEECCCCcEE
Q 002591 831 SCNGNKFHSCVFHPTYPS-LLVIGCYQSLELWNMSENKTM 869 (903)
Q Consensus 831 ~~~~~~i~si~~sp~g~~-l~t~s~dg~I~vwdl~~~~~~ 869 (903)
.-.-+...|+++.|+-.+ +++|+..+.++|||+.+...+
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 222334667778887655 455666678999999877544
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-22 Score=220.29 Aligned_cols=199 Identities=23% Similarity=0.381 Sum_probs=182.9
Q ss_pred eeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 002591 614 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 693 (903)
Q Consensus 614 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 693 (903)
..+..|.+|..+|.||.|+.+..+|++|+.+|+|+|||++..+.++++.+|...+..|.|+|-+.+++.|+.|+.+++||
T Consensus 61 ~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD 140 (825)
T KOG0267|consen 61 NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWD 140 (825)
T ss_pred chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehh
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceeEEEecCCCEEEEEEcCC
Q 002591 694 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAEN 770 (903)
Q Consensus 694 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~---~~~~~v~~sp~~~~ll~~s~dg 770 (903)
++. ..|...+.+|...|.+++|+|+|. +++++++|.+|+|||...|+....|+ +.+..+.|+|..-.+..|+.|+
T Consensus 141 ~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~ 218 (825)
T KOG0267|consen 141 IRK-KGCSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR 218 (825)
T ss_pred hhc-cCceeeecCCcceeEEEeecCCCc-eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc
Confidence 997 568899999999999999999977 56699999999999999999998887 5667788999888888899999
Q ss_pred eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEE
Q 002591 771 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVR 814 (903)
Q Consensus 771 ~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~ 814 (903)
+|++||+++.+.+.........|.+++|++++..+++|....+.
T Consensus 219 tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 219 TVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred eeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 99999999999999888888999999999999999998877544
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-21 Score=208.66 Aligned_cols=258 Identities=22% Similarity=0.339 Sum_probs=199.7
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--------CCceeEEeccCCCCeEEEEECCCCCEEEEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------TLKSKTNLEEHSSLITDVRFSPSMPRLATS 683 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~--------t~~~~~~l~~h~~~V~~l~fspdg~~Lasg 683 (903)
+|....+++.|.+.|++++|.+....|++++.||+|++|++. ..+.+.+|++|.++|.|+++.+++..+++|
T Consensus 283 ~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 283 KWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred ecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence 456666999999999999999999999999999999999983 246788999999999999999999999999
Q ss_pred eCCCcEEEEeCCC---------CCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---Cc
Q 002591 684 SFDKTVRVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GT 751 (903)
Q Consensus 684 s~Dg~I~IWDl~~---------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~ 751 (903)
+.||+|+.|++.. ......++.||++.|+.++++....++ ++|+.||+|++|+...... .+|.. +.
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~L-lscs~DgTvr~w~~~~~~~-~~f~~~~e~g 440 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRL-LSCSSDGTVRLWEPTEESP-CTFGEPKEHG 440 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccce-eeecCCceEEeeccCCcCc-cccCCccccC
Confidence 9999999995531 123456788999999999999986665 5999999999999877655 33322 22
Q ss_pred e--eEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEecCC-------CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 002591 752 A--QMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGH-------TKPIDSVCWDPSGELLASVSED-SVRVWTVGS 820 (903)
Q Consensus 752 ~--~v~~sp~~-~~ll~~s~dg~I~i~D~~t~~~~~~l~~h-------~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s 820 (903)
. .+.+.... ...++...-+.-.++|.+....+..+... ...+.-+.++|...+.+++.++ .|+++|..+
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 2 23332222 22222222333444455554444443321 1346778999999999999999 999999988
Q ss_pred CCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccC
Q 002591 821 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH 874 (903)
Q Consensus 821 ~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h 874 (903)
+ ..++....|...++++++.|+|.+|++++.|+.|++|.+....++ ....|
T Consensus 521 ~---~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 521 G---KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred c---ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 7 778888888999999999999999999999999999999877666 33344
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=221.66 Aligned_cols=242 Identities=19% Similarity=0.362 Sum_probs=201.0
Q ss_pred CCCeEEEEEcCCCCE----EEEEeCCCcEEEEECCC------CceeEEeccCCCCeEEEEECCCCC-EEEEEeCCCcEEE
Q 002591 623 TSKVICCHFSSDGKL----LATGGHDKKAVLWHTDT------LKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRV 691 (903)
Q Consensus 623 ~~~V~~l~fspdg~~----Latgs~Dg~V~vWd~~t------~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~I 691 (903)
..+.++++|.+.|.. ||.|..||.|.+||... ...+.++..|++.|..+.|++... +||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 456889999987765 89999999999999764 244566778999999999999876 9999999999999
Q ss_pred EeCCCCCceeEE-eccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-----CceeEEEecCCC-EEE
Q 002591 692 WDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLG-RYL 764 (903)
Q Consensus 692 WDl~~~~~~~~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~-----~~~~v~~sp~~~-~ll 764 (903)
||+.+....... -....+.|.+|+|+..-.++|++++.+|.+.|||++..+.+-.+.. +...+.|+|++. .++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999874443332 1225678999999988888999999999999999998876655543 355789999984 566
Q ss_pred EEEcCC---eEEEEECCCC-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceE
Q 002591 765 AAAAEN---VVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 838 (903)
Q Consensus 765 ~~s~dg---~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg-~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~ 838 (903)
+++.|. .|.+||+|.- ..+.++.+|...|.++.|++.+ .+|++++.| .|.+|+.+++ +.+.++....+.+.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~f 300 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCF 300 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCccee
Confidence 665543 8999999875 6777788999999999999966 688999988 9999999987 77888888889999
Q ss_pred EEEEeCCCC-EEEEEECCCeEEEEECCCCc
Q 002591 839 SCVFHPTYP-SLLVIGCYQSLELWNMSENK 867 (903)
Q Consensus 839 si~~sp~g~-~l~t~s~dg~I~vwdl~~~~ 867 (903)
.+.|+|... .|++++.||.|.||.+.+..
T Consensus 301 dv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 301 DVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999887 67788999999999987765
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=199.27 Aligned_cols=269 Identities=17% Similarity=0.275 Sum_probs=212.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEe
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 704 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~ 704 (903)
.|..++|-|||..|+.+. +..+.|||...|..+.++++|.+.|.|++|+.||+++++|+.|+.|.||.-.-.+ +..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~Lk- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--ILK- 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--eee-
Confidence 899999999999887775 4579999999999999999999999999999999999999999999999876433 222
Q ss_pred ccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeE-EeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEE
Q 002591 705 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR 783 (903)
Q Consensus 705 ~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~-~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~ 783 (903)
..|.+.|.|+.|+|-.. .+++|+- ...-+|........+ .....+.+++|..+|.+++.|-.+|+|.|-+....+.+
T Consensus 90 YSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred eccCCeeeEeecCchHH-Hhhhcch-hhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 35999999999999865 4557774 457789877554332 22345677889999999999999999999854433322
Q ss_pred EEe--cCCCCCeEEEEEcCCC-----CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECC
Q 002591 784 LSL--QGHTKPIDSVCWDPSG-----ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 855 (903)
Q Consensus 784 ~~l--~~h~~~V~sl~~spdg-----~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~d 855 (903)
..- .+..++|.+|+|+|.. ..+++...+ ++.+|.+.. ..+..-..-+....++.+.++|.++++|++|
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccCC
Confidence 222 2467899999999953 366777766 777777653 2332222234456788999999999999999
Q ss_pred CeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 856 QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 856 g~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+.+++|.-+.-.+-++...+.+|+.++..|++.+++.|+.||+|-.|+
T Consensus 244 k~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 244 KQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 999999865555547777889999999999999999999999998764
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=185.78 Aligned_cols=288 Identities=19% Similarity=0.350 Sum_probs=220.2
Q ss_pred ceeeeeEe-ecCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEECCC-C--ceeEEec--cCCCCeEEEEECCC----
Q 002591 612 SFKEANSV-RASTSKVICCHFSS-----DGKLLATGGHDKKAVLWHTDT-L--KSKTNLE--EHSSLITDVRFSPS---- 676 (903)
Q Consensus 612 ~~~~~~~l-~~H~~~V~~l~fsp-----dg~~Latgs~Dg~V~vWd~~t-~--~~~~~l~--~h~~~V~~l~fspd---- 676 (903)
.++....+ +.|..+|..++|.. .-..+||++. ..|.||.... + ..+..+. .|......++|+-+
T Consensus 26 ~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~ 104 (385)
T KOG1034|consen 26 SYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTG 104 (385)
T ss_pred ceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCC
Confidence 44554444 47889999999984 2236677664 4788888663 2 2233332 47777888888654
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec------C
Q 002591 677 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------G 750 (903)
Q Consensus 677 g~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~------~ 750 (903)
..+||+|+.-|.|+|.|+.+ ..+...+.+|...|..|.|+|+...++++|+.|..||+|++.+..|+.+|.+ +
T Consensus 105 ~p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred CeeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence 34789999999999999998 7888999999999999999999999999999999999999999999998853 5
Q ss_pred ceeEEEecCCCEEEEEEcCCeEEEEECCCCeE------E---------------------E-EecCCCCCeEEEEEcCCC
Q 002591 751 TAQMRFQPHLGRYLAAAAENVVSILDAETQAC------R---------------------L-SLQGHTKPIDSVCWDPSG 802 (903)
Q Consensus 751 ~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~------~---------------------~-~l~~h~~~V~sl~~spdg 802 (903)
+.++.|+.++.++++++.|..|.+|++...+. . + +...|...|.|+.|- |
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g 261 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G 261 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h
Confidence 78899999999999999999999999883211 1 0 112366677777777 6
Q ss_pred CEEEEEeCC-eEEEEECCCC-C----------CcceEEEeecCCCce--EEEEEeCCCCEEEEEECCCeEEEEECCCCcE
Q 002591 803 ELLASVSED-SVRVWTVGSG-S----------EGECVHELSCNGNKF--HSCVFHPTYPSLLVIGCYQSLELWNMSENKT 868 (903)
Q Consensus 803 ~~lasgs~d-~I~iwdl~s~-~----------~~~~i~~~~~~~~~i--~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~ 868 (903)
+++++-+.+ .|..|....- + ....+.++......| ...+|.+-.+.|+.|...|.|++||++..+.
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 888887766 9999987221 1 112233333333333 4456777889999999999999999988776
Q ss_pred E-----EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 869 M-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 869 ~-----~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
. ........|...+|+.|+.+|+..++|++|.-||
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 3 2233456899999999999999999999998886
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-21 Score=223.16 Aligned_cols=274 Identities=19% Similarity=0.283 Sum_probs=215.7
Q ss_pred eEEEEEcCCCC-EEEEEe----------CCCcEEEEECC--CCc----eeEEeccCCCCeEEEEECCCCCE----EEEEe
Q 002591 626 VICCHFSSDGK-LLATGG----------HDKKAVLWHTD--TLK----SKTNLEEHSSLITDVRFSPSMPR----LATSS 684 (903)
Q Consensus 626 V~~l~fspdg~-~Latgs----------~Dg~V~vWd~~--t~~----~~~~l~~h~~~V~~l~fspdg~~----Lasgs 684 (903)
--.++|+|++. +||+|. .+.++-||.++ +.+ .+..+ .-....++++|.+.+.. ||.|.
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ 87 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGL 87 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccc
Confidence 34578899886 666543 34556666654 222 22222 23456889999988775 88889
Q ss_pred CCCcEEEEeCCCC-----CceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-----ecCceeE
Q 002591 685 FDKTVRVWDADNP-----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQM 754 (903)
Q Consensus 685 ~Dg~I~IWDl~~~-----~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~-----~~~~~~v 754 (903)
.||.|.+||...- ...+.++..|++.|..++|++..++++++|+.||.|.|||+..-+.-..+ ...+.++
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 9999999998751 23466778899999999999999999999999999999999875533332 3467888
Q ss_pred EEecCCCEEEEE-EcCCeEEEEECCCCeEEEEecCCCC--CeEEEEEcCCCC-EEEEEeCC----eEEEEECCCCCCcce
Q 002591 755 RFQPHLGRYLAA-AAENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGE-LLASVSED----SVRVWTVGSGSEGEC 826 (903)
Q Consensus 755 ~~sp~~~~ll~~-s~dg~I~i~D~~t~~~~~~l~~h~~--~V~sl~~spdg~-~lasgs~d----~I~iwdl~s~~~~~~ 826 (903)
+|+....++++. +.+|++.|||++..+.+..+..+.. .+..|.|+|+.. .|+++++| .|.+||+|... ..
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP 245 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SP 245 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cc
Confidence 888877665555 5577999999999988888876655 477899999876 55555544 79999998653 45
Q ss_pred EEEeecCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCC-EEEEEecCCcEEEc
Q 002591 827 VHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG-YVASASHDKFVKLW 902 (903)
Q Consensus 827 i~~~~~~~~~i~si~~sp~g-~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~-~LaSgs~DG~I~IW 902 (903)
++++.+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+ .+....+++..+.|+|... .|+.++-||.|.||
T Consensus 246 ~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 246 LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 66778999999999999976 88999999999999999999999 7778889999999999776 78888999999987
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=188.97 Aligned_cols=314 Identities=18% Similarity=0.223 Sum_probs=225.2
Q ss_pred ceEEeeecCCCCCcCCCCcccccccCcceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------Ccee
Q 002591 585 NVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------LKSK 658 (903)
Q Consensus 585 ~v~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t------~~~~ 658 (903)
+|+.|++...........+.+.......--+.+.+++|.+.|++|.|+.++.+||+|+.|..++||+++. .+++
T Consensus 18 ~i~~FL~QR~i~~~~~~~k~F~~~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI 97 (609)
T KOG4227|consen 18 KIESFLCQREIGSVKSVVKTFRPDFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI 97 (609)
T ss_pred eeeeeeeecccCCChhhhhhhchhhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc
Confidence 4566666544333322222222211112224456789999999999999999999999999999999863 3444
Q ss_pred EEec-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEecc--CCCceEEEEecCCCCeEEEEEeCCCcEEE
Q 002591 659 TNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRY 735 (903)
Q Consensus 659 ~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~--h~~~V~sl~fsp~~~~ll~sgs~Dg~I~i 735 (903)
.... .|...|.|++|....++|++|..+++|.+.|+++ ...+..+.. ..+.|+.+..+|.. ++|++.+.++.|.+
T Consensus 98 ~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt-~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~ 175 (609)
T KOG4227|consen 98 GVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET-KQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSF 175 (609)
T ss_pred eeccCccccceEEEEEccCCeeEecCCCcceeEeeeccc-ceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEE
Confidence 4443 3568999999999999999999999999999998 555555542 23589999999994 46678899999999
Q ss_pred EEcCCCe------eeEEeecCceeEEEecCCCEE-EEEEcCCeEEEEECCCCe-EEEEec------CCCCCeEEEEEcCC
Q 002591 736 WSINNGS------CTRVFKGGTAQMRFQPHLGRY-LAAAAENVVSILDAETQA-CRLSLQ------GHTKPIDSVCWDPS 801 (903)
Q Consensus 736 wDi~t~~------~~~~~~~~~~~v~~sp~~~~l-l~~s~dg~I~i~D~~t~~-~~~~l~------~h~~~V~sl~~spd 801 (903)
||++... |...+......+.|+|....| ++....+.+.+||.+... .+.... .......++.|+|+
T Consensus 176 ~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~ 255 (609)
T KOG4227|consen 176 IDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS 255 (609)
T ss_pred EeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC
Confidence 9998754 222333456678899988655 455667899999998753 222211 11223467889999
Q ss_pred CCEEEEEeCC-eEEEEECCCCCCcceEEEeec------CCCceEEEEEeCCCCEEEEEECCCeEEEEECCC---------
Q 002591 802 GELLASVSED-SVRVWTVGSGSEGECVHELSC------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE--------- 865 (903)
Q Consensus 802 g~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~------~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~--------- 865 (903)
|+.|.+.-.. .-.+||+-+.. ..+..+.. ....+.+|+|..+.. +++|+.+-.|++|.+..
T Consensus 256 G~Q~msiRR~~~P~~~D~~S~R--~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~ 332 (609)
T KOG4227|consen 256 GNQFMSIRRGKCPLYFDFISQR--CFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQ 332 (609)
T ss_pred CCeehhhhccCCCEEeeeeccc--ceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccc
Confidence 9988777666 66778886531 12222221 123466778877665 88888888999998742
Q ss_pred ---------------CcEEEEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 866 ---------------NKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 866 ---------------~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+....+.+|...++-+.|++...+|++.+..+.++||.
T Consensus 333 IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 333 IGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 12336789999999999999999999999999999993
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-20 Score=210.72 Aligned_cols=236 Identities=19% Similarity=0.319 Sum_probs=192.7
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CceeEEeccCCCCeEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCce
Q 002591 626 VICCHFSS-DGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYS 700 (903)
Q Consensus 626 V~~l~fsp-dg~~Latgs~Dg~V~vWd~~t---~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~IWDl~~~~~~ 700 (903)
+..|.|.. +.++|||++..|.|.+||+.. .+.+..|..|+..|++++|++.. .+|++|+.||+|++||++. .+.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-~~S 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-KKS 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-ccc
Confidence 45567764 557999999999999999986 56677899999999999998864 4789999999999999998 666
Q ss_pred eEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe-eeE---EeecCceeEEEecCCCEEEEEEcCCeEEEEE
Q 002591 701 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTR---VFKGGTAQMRFQPHLGRYLAAAAENVVSILD 776 (903)
Q Consensus 701 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~-~~~---~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D 776 (903)
..++.+....|.++.|+|...+.|+++.+.|.+.+||++... +.. .+.+.+.++.|+|+..+|++|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 778888999999999999988899999999999999999754 333 3457889999999999999999999999999
Q ss_pred CCCCeE--EEEecCCCCCeEEEEEcCCCC-EEEEEeC--C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC-CCCEE
Q 002591 777 AETQAC--RLSLQGHTKPIDSVCWDPSGE-LLASVSE--D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-TYPSL 849 (903)
Q Consensus 777 ~~t~~~--~~~l~~h~~~V~sl~~spdg~-~lasgs~--d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp-~g~~l 849 (903)
..+.+. +.++. ...+|.+|.|-|+.. .|++++. | .|+|||++.. .-....+..|...++.++|.. +-..+
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--YIP~~t~~eH~~~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--YIPYATFLEHTDSVTGIAWDSGDRINL 325 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccc--cccceeeeccCccccceeccCCCceee
Confidence 987643 33333 457899999999876 6776654 3 8999999864 456677888999999999976 34557
Q ss_pred EEEECCCeEEEEECCC
Q 002591 850 LVIGCYQSLELWNMSE 865 (903)
Q Consensus 850 ~t~s~dg~I~vwdl~~ 865 (903)
.+++.|+.|..-.++.
T Consensus 326 ~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 326 WSCSKDGTVLQHLFKN 341 (839)
T ss_pred EeecCccHHHHhhhhc
Confidence 7777888766554443
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=181.85 Aligned_cols=207 Identities=20% Similarity=0.328 Sum_probs=167.1
Q ss_pred ccCCCCeEEEEECC-CCCEEEEEeCCCcEEEEeCCCCC-----------cee---EEeccCCCceEEEEecCCCCeEEEE
Q 002591 662 EEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG-----------YSL---RTFMGHSASVMSLDFHPNKDDLICS 726 (903)
Q Consensus 662 ~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~~~~-----------~~~---~~~~~h~~~V~sl~fsp~~~~ll~s 726 (903)
+.|.+.|+++...+ .|+++++|+.||.|.|||+.+.. +++ ..-.+|.-.|.++.|.|-..-++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45778899998876 58899999999999999997632 111 1123688899999999988889989
Q ss_pred EeCCCcEEEEEcCCCeeeEEee--cCceeEEEecCC--C-EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC
Q 002591 727 CDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHL--G-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 801 (903)
Q Consensus 727 gs~Dg~I~iwDi~t~~~~~~~~--~~~~~v~~sp~~--~-~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd 801 (903)
++.|.++++||.++......|+ +.+..-+++|-. . .++++..+-.|++.|+.+|.+.+++.+|...|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 9999999999999988776664 556666677654 2 4445555679999999999999999999999999999998
Q ss_pred CC-EEEEEeCC-eEEEEECCCCC------------CcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCc
Q 002591 802 GE-LLASVSED-SVRVWTVGSGS------------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 867 (903)
Q Consensus 802 g~-~lasgs~d-~I~iwdl~s~~------------~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~ 867 (903)
.+ .|++|+.| .|++||++... ....++.-..|.+.|..++|..++.++++++.|..+++|+...|+
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 77 67888888 99999998641 112222334567789999999999999999999999999998775
Q ss_pred E
Q 002591 868 T 868 (903)
Q Consensus 868 ~ 868 (903)
-
T Consensus 280 n 280 (397)
T KOG4283|consen 280 N 280 (397)
T ss_pred c
Confidence 3
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=200.28 Aligned_cols=247 Identities=15% Similarity=0.257 Sum_probs=186.9
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--eccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEe
Q 002591 617 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWD 693 (903)
Q Consensus 617 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~--l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~IWD 693 (903)
..+..|...|.++.|.|....|++++.|.++++||+++.+++.. +.+|...|.+++|.+.+. .|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 44568999999999999667999999999999999998888777 899999999999999765 789999999999999
Q ss_pred CCCCCc--------------------------eeEEeccCCCceEE---EEecCCCCeEEEEEeC-CCcEEEEEcCCCee
Q 002591 694 ADNPGY--------------------------SLRTFMGHSASVMS---LDFHPNKDDLICSCDG-DGEIRYWSINNGSC 743 (903)
Q Consensus 694 l~~~~~--------------------------~~~~~~~h~~~V~s---l~fsp~~~~ll~sgs~-Dg~I~iwDi~t~~~ 743 (903)
++-.+. -++....+...|.+ +.+..|.. .||+++. |+.|+|||++...+
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeeccccc
Confidence 974220 01222234444444 44555545 4557766 99999999997654
Q ss_pred eEEe--------------ecCceeEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEecCCCCC--eEEEEEcCCCCEE
Q 002591 744 TRVF--------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKP--IDSVCWDPSGELL 805 (903)
Q Consensus 744 ~~~~--------------~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~--~~~~~l~~h~~~--V~sl~~spdg~~l 805 (903)
.... ..+..+++....|.++++.+.|+.|++|++.+. .++..+.++... ...-+.+|++.+|
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 3221 123456777778899999999999999999875 344444443322 2223578999999
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCC
Q 002591 806 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSEN 866 (903)
Q Consensus 806 asgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g-~~l~t~s~dg~I~vwdl~~~ 866 (903)
++|+.| ..++|.+.+.. .....+.+|...|++++|.|.. .-+++++.|-.++||++..+
T Consensus 333 ~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999999 99999998764 3445567788899999998843 34778899999999999654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=181.72 Aligned_cols=274 Identities=19% Similarity=0.262 Sum_probs=193.5
Q ss_pred cceEEEEeCCCceec---cCCCeeeeCCcchhhhhhccccccCCC-----------CCceEEeeecCCCCCcCCCCcccc
Q 002591 541 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSL-----------DDNVESFLSHDDTDPRDAGGRGMD 606 (903)
Q Consensus 541 ~~~i~~s~dg~~~~~---~~~~~lWd~~~~~~~~~~~~~~~~gs~-----------d~~v~~~~~~d~~~~~~~~~~~~d 606 (903)
...++|+.||.++++ +.+++||++++-+...... +-.+-+. ...+..|+..++.....+..+--|
T Consensus 89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~-~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d 167 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRC-IRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD 167 (420)
T ss_pred eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhH-hhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc
Confidence 458999999999877 7788999999866544311 1111111 223333333222111111111111
Q ss_pred cccCcceeeee---EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEE
Q 002591 607 VSQGFSFKEAN---SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 683 (903)
Q Consensus 607 ~~~~~~~~~~~---~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg 683 (903)
-.-.+++...- .-+.|.-.|..+-....+++|++++.|.+|.||+++ |..+..+......-+..+.+|+|++|+++
T Consensus 168 G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~ 246 (420)
T KOG2096|consen 168 GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVS 246 (420)
T ss_pred CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEe
Confidence 00011111111 223466778888888889999999999999999998 89999998877788889999999999999
Q ss_pred eCCCcEEEEeCCC--C-----CceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCC-------eeeEEee-
Q 002591 684 SFDKTVRVWDADN--P-----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-------SCTRVFK- 748 (903)
Q Consensus 684 s~Dg~I~IWDl~~--~-----~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~-------~~~~~~~- 748 (903)
+..-.|++|.+-- . -..+..++||...|..++|+++...++ +.+.||+++|||+.-. +.++++.
T Consensus 247 gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v-tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~ 325 (420)
T KOG2096|consen 247 GFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV-TVSKDGKWRIWDTDVRYEAGQDPKILKEGSA 325 (420)
T ss_pred cCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE-EEecCCcEEEeeccceEecCCCchHhhcCCc
Confidence 9999999998731 1 123567889999999999999987655 9999999999998632 2222221
Q ss_pred ------cCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCCeEEEEEC
Q 002591 749 ------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSEDSVRVWTV 818 (903)
Q Consensus 749 ------~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~-~h~~~V~sl~~spdg~~lasgs~d~I~iwdl 818 (903)
+....+..+|.+..| +.+....+.+|..++++...+++ .|...|.+|+|+++|++++++++..++++.-
T Consensus 326 pl~aag~~p~RL~lsP~g~~l-A~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~n 401 (420)
T KOG2096|consen 326 PLHAAGSEPVRLELSPSGDSL-AVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIRN 401 (420)
T ss_pred chhhcCCCceEEEeCCCCcEE-EeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeecC
Confidence 123357788886655 55666789999999998777665 4999999999999999999999988888763
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.7e-19 Score=180.47 Aligned_cols=266 Identities=18% Similarity=0.273 Sum_probs=205.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------ceeEEec-cCCCCeEEEEEC-------CCCCEEEEEe
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTL------------KSKTNLE-EHSSLITDVRFS-------PSMPRLATSS 684 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~------------~~~~~l~-~h~~~V~~l~fs-------pdg~~Lasgs 684 (903)
-...+.|+|||..|++-+.|..+.+|++... +...+++ .....|.+.+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 4567899999999999999999999987521 1111122 234568888885 5677899999
Q ss_pred CCCcEEEEeCCCCCceeEEecc--CCC---ceEEEEecCCCCeEEEEEeCCCcEEEEEc-CCCeeeEEe----------e
Q 002591 685 FDKTVRVWDADNPGYSLRTFMG--HSA---SVMSLDFHPNKDDLICSCDGDGEIRYWSI-NNGSCTRVF----------K 748 (903)
Q Consensus 685 ~Dg~I~IWDl~~~~~~~~~~~~--h~~---~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi-~t~~~~~~~----------~ 748 (903)
.|.-|++||.-+ ++....+.+ |-+ ...+++|+|||..++ ++....|++||+ +.|.....+ .
T Consensus 131 r~~PIh~wdaft-G~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 131 RDQPIHLWDAFT-GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred ccCceeeeeccc-cccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhccccccc
Confidence 999999999988 555554443 333 356799999998776 566899999999 555422221 2
Q ss_pred cCceeEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcc
Q 002591 749 GGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGE 825 (903)
Q Consensus 749 ~~~~~v~~sp~~~-~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d--~I~iwdl~s~~~~~ 825 (903)
+-+.+++|+|... .+++++....+-||.-....++..+.+|.+.|+.++|+++|+.|++|+.. .|.+||++... .
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~ 285 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--D 285 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--c
Confidence 3456788999886 67777778899999999999999999999999999999999999998865 99999998653 3
Q ss_pred eEEEeecCCC---ceEEEEEeCCCCEEEEEECCCeEEEEECCC-CcEE-EEccCCCCEEEEEEecCCCEEEEEec
Q 002591 826 CVHELSCNGN---KFHSCVFHPTYPSLLVIGCYQSLELWNMSE-NKTM-TLTAHEGLIAALAVSTETGYVASASH 895 (903)
Q Consensus 826 ~i~~~~~~~~---~i~si~~sp~g~~l~t~s~dg~I~vwdl~~-~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~ 895 (903)
.+..+..|.. .-.-+...|++.+|++|+.||.|++||+.+ +..+ .+..|...|+.++++|--.++|+++.
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 3334433332 333445678999999999999999999988 5534 77789999999999999888888764
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-19 Score=191.10 Aligned_cols=254 Identities=18% Similarity=0.243 Sum_probs=200.7
Q ss_pred EECCCCceeEEeccCCCCeEEEEECCCCC--EEEEEeCCCcEEEEeCC---CCCceeEEeccCCCceEEEEecCCCCeEE
Q 002591 650 WHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDAD---NPGYSLRTFMGHSASVMSLDFHPNKDDLI 724 (903)
Q Consensus 650 Wd~~t~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~I~IWDl~---~~~~~~~~~~~h~~~V~sl~fsp~~~~ll 724 (903)
+|+.+-.....++.+...|++++|+|... .+|+|..-|.|-+||+. .....+..+..|..+|.+|.|+|.+...+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 44445556667778899999999999765 78888889999999995 22345678889999999999999988888
Q ss_pred EEEeCCCcEEEEEcCCCeeeEEeec-----CceeEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEecCCCCCeEEEEE
Q 002591 725 CSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCW 798 (903)
Q Consensus 725 ~sgs~Dg~I~iwDi~t~~~~~~~~~-----~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~-~~~l~~h~~~V~sl~~ 798 (903)
++.+.||+|++-|++.......+.. ....+.|+.+...++++..-|...+||.++... ...+.-|...|++|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 8999999999999998754333322 344566777778888888888999999998755 6667779999999999
Q ss_pred cCCCC-EEEEEeCC-eEEEEECCCCCCcc-eEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECC----CCcEEEE
Q 002591 799 DPSGE-LLASVSED-SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS----ENKTMTL 871 (903)
Q Consensus 799 spdg~-~lasgs~d-~I~iwdl~s~~~~~-~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~----~~~~~~~ 871 (903)
+|-.. +|++++.| +++|||++...... .+.....|...|.++.|+|.+..|++.+.|..|+|||.. ..+....
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 99766 88999999 99999998764433 244555678899999999999889999999999999984 2233333
Q ss_pred ccCCC----C--EEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 872 TAHEG----L--IAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 872 ~~h~~----~--V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
..|.. . .....|.|+..+|++|-.-..|-|||
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 33322 2 34458999999999999888888875
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.6e-19 Score=187.26 Aligned_cols=248 Identities=16% Similarity=0.221 Sum_probs=202.0
Q ss_pred eeeeEeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeE--EeccCC-CCeEEEEECCCCCEEEEEeCCCcE
Q 002591 614 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKT--NLEEHS-SLITDVRFSPSMPRLATSSFDKTV 689 (903)
Q Consensus 614 ~~~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~V~vWd~~t~~~~~--~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~I 689 (903)
..+..+.-...+|.+++|.|+|. .+++++.....+.||+.+.+... ...++. ..+.....++++.+|+..+..|.|
T Consensus 248 ~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I 327 (514)
T KOG2055|consen 248 PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHI 327 (514)
T ss_pred hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceE
Confidence 34555666678999999999999 99999999999999998765433 333443 457788889999999999999999
Q ss_pred EEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----CceeEEEecCCCEEEE
Q 002591 690 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLA 765 (903)
Q Consensus 690 ~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~----~~~~v~~sp~~~~ll~ 765 (903)
.|....+ +..+.+++ -.+.|..++|+.++..++ +++.+|.|.+||++...|++.|.. +.+.+|.+.++.++++
T Consensus 328 ~lLhakT-~eli~s~K-ieG~v~~~~fsSdsk~l~-~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~ 404 (514)
T KOG2055|consen 328 HLLHAKT-KELITSFK-IEGVVSDFTFSSDSKELL-ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLAT 404 (514)
T ss_pred Eeehhhh-hhhhheee-eccEEeeEEEecCCcEEE-EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEe
Confidence 9999887 66666666 567899999999987766 555689999999999999998863 4567888999999999
Q ss_pred EEcCCeEEEEECCC------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEeecCCCc
Q 002591 766 AAAENVVSILDAET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGNK 836 (903)
Q Consensus 766 ~s~dg~I~i~D~~t------~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d---~I~iwdl~s~~~~~~i~~~~~~~~~ 836 (903)
|+..|.|.|||..+ .+++..+..-...|+++.|++|..+||.++.. .+++..+.+.......-.....-+.
T Consensus 405 GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~ 484 (514)
T KOG2055|consen 405 GSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGH 484 (514)
T ss_pred ccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccc
Confidence 99999999999654 46777777778899999999999999988865 7999988765322222222334567
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002591 837 FHSCVFHPTYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 837 i~si~~sp~g~~l~t~s~dg~I~vwdl~ 864 (903)
++|++|+|.+.++++|..+|.|.+|.+.
T Consensus 485 vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 485 VTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eEEEEecCCCceEEeecCCCceeeEeec
Confidence 9999999999999999999999999874
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-19 Score=189.52 Aligned_cols=218 Identities=18% Similarity=0.276 Sum_probs=182.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEe
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 704 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~ 704 (903)
.-.|++......|+++|+..++|+|||+....+.+.+++|...|+++.|+-...|||+++..|.|.|..+.+ +.....|
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f 159 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTF 159 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-Cccccce
Confidence 445665555568999999999999999998788888999999999999999999999999999999999988 4444555
Q ss_pred ccC-CCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEE----eecCceeEEEecCCCE-EEEEEcCCeEEEEECC
Q 002591 705 MGH-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKGGTAQMRFQPHLGR-YLAAAAENVVSILDAE 778 (903)
Q Consensus 705 ~~h-~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~----~~~~~~~v~~sp~~~~-ll~~s~dg~I~i~D~~ 778 (903)
... ...|.-+.|++..+.+|.+++++|.|.+||+.....+.. +..+...+||+|.... |++.+.|..|.+||++
T Consensus 160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 543 455668999999999999999999999999987765543 3456788999998855 5566789999999999
Q ss_pred CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 002591 779 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 846 (903)
Q Consensus 779 t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g 846 (903)
..+....+. ...+...++|.++|.+|++|... .|..||++..+ ..+..+..|...|++++|-+.-
T Consensus 240 s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 240 SQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEEEeeecc
Confidence 877666554 56789999999999999999888 99999999754 5677778889999999998764
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=193.16 Aligned_cols=291 Identities=19% Similarity=0.268 Sum_probs=223.0
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCCc---------------------eeEE-------
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGK---LLATGGHDKKAVLWHTDTLK---------------------SKTN------- 660 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~---~Latgs~Dg~V~vWd~~t~~---------------------~~~~------- 660 (903)
.|+.+..++||.+-|.+|+|..-+. +||+++.|..||||.+.-+. ....
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 7889999999999999999987543 89999999999999864211 1111
Q ss_pred ---eccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCce------eEEeccCCCceEEEEecCCCCeEEEEEeCCC
Q 002591 661 ---LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS------LRTFMGHSASVMSLDFHPNKDDLICSCDGDG 731 (903)
Q Consensus 661 ---l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~------~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg 731 (903)
+-+|.+.|.++.|+|.+..|++++.|+++.||.-++..-. +-...+.....+..-|+|+++.+ ++-+.-|
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i-i~~g~~G 338 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI-IAHGRTG 338 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE-EEecccC
Confidence 2389999999999999999999999999999988763111 12223345568889999998644 4777889
Q ss_pred cEEEEEcCCCe-e--eEEe---ecCceeEEEecCCCEEEEEEcCCeEEEEECC----CCeEEEEecCCCCCeEEEEEcCC
Q 002591 732 EIRYWSINNGS-C--TRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAE----TQACRLSLQGHTKPIDSVCWDPS 801 (903)
Q Consensus 732 ~I~iwDi~t~~-~--~~~~---~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~----t~~~~~~l~~h~~~V~sl~~spd 801 (903)
..++|...... + ...+ ...+..+.|.|.|.++++++.|-+-++|-.- +...+..-..|...++|++|-+.
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 99999833321 1 1122 3457889999999999999999999998654 11223333458889999999986
Q ss_pred CCEEEEEeCC-eEEEEECCCC-------------------------------------------CC--------------
Q 002591 802 GELLASVSED-SVRVWTVGSG-------------------------------------------SE-------------- 823 (903)
Q Consensus 802 g~~lasgs~d-~I~iwdl~s~-------------------------------------------~~-------------- 823 (903)
...|++|.+. -+|+|+.... ..
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 5567777777 7899975311 00
Q ss_pred ----------------cceEEEeecCCCceEEEEEeCCCCEEEEEECCC-----eEEEEECCCCcEE-EEccCCCCEEEE
Q 002591 824 ----------------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTM-TLTAHEGLIAAL 881 (903)
Q Consensus 824 ----------------~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg-----~I~vwdl~~~~~~-~~~~h~~~V~sl 881 (903)
...++.+-+|+..|.+++.+|+++.+++++... .|++|+..+.... .+..|.-.|+.+
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL 578 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence 001123457888999999999999999988653 7999999887776 699999999999
Q ss_pred EEecCCCEEEEEecCCcEEEcC
Q 002591 882 AVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 882 ~~spdg~~LaSgs~DG~I~IWd 903 (903)
+|+|||+||++.|.|.++.+|+
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred EECCCCcEEEEeecCceEEeee
Confidence 9999999999999999999995
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-16 Score=178.81 Aligned_cols=293 Identities=30% Similarity=0.495 Sum_probs=231.9
Q ss_pred CCcccccccCcceeeeeEeecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEeccCCCCeEEEEECCCCC-
Q 002591 601 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP- 678 (903)
Q Consensus 601 ~~~~~d~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~-Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~- 678 (903)
....|+... .......+..|...|.+++|++++.++++++. |+.+++|++.+++.+..+.+|...|.+++|+|++.
T Consensus 135 ~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 135 TVKLWDLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred cEEEEEecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce
Confidence 344454432 25778889999999999999999998988885 99999999999899999999999999999999998
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeE-EeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCee-eEEe---ecCcee
Q 002591 679 RLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF---KGGTAQ 753 (903)
Q Consensus 679 ~Lasgs~Dg~I~IWDl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~-~~~~---~~~~~~ 753 (903)
.+++++.|+.|++||... +..+. .+.+|...+ ...|++++ .++++++.|+.+++||++.... ...+ ...+..
T Consensus 213 ~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 289 (466)
T COG2319 213 LIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289 (466)
T ss_pred EEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEE
Confidence 555558999999999885 55666 688888876 44899998 4556999999999999987664 4444 345677
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcCCCCEEEEE-eCC-eEEEEECCCCCCcceEEE
Q 002591 754 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECVHE 829 (903)
Q Consensus 754 v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~--~h~~~V~sl~~spdg~~lasg-s~d-~I~iwdl~s~~~~~~i~~ 829 (903)
+.|.|++..+++++.|+.+.+||..+........ .|...|..+.|.+++..++.+ ..+ .+.+|++.... ....
T Consensus 290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~ 366 (466)
T COG2319 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLKT 366 (466)
T ss_pred EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---eeEE
Confidence 7899988888888888889999999887777665 788889999994332555555 566 78889998764 2222
Q ss_pred eecCCCceEEEEEeCCCCEEEE-EECCCeEEEEECCCCcEEEEccCC-CCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 830 LSCNGNKFHSCVFHPTYPSLLV-IGCYQSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 830 ~~~~~~~i~si~~sp~g~~l~t-~s~dg~I~vwdl~~~~~~~~~~h~-~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
... ...+..+.+.+ ...++. +..++.+.+|+............. ..+..+.+.+++.++++++.++.+++|+
T Consensus 367 ~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 367 LEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred ecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 222 22278888888 533444 578899999999999888555544 8899999999999999999999999995
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-17 Score=181.36 Aligned_cols=282 Identities=31% Similarity=0.550 Sum_probs=228.4
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEeccCC-CCeEEEEE-CCCCC-EEEEEeC-CCcEEEE
Q 002591 618 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHS-SLITDVRF-SPSMP-RLATSSF-DKTVRVW 692 (903)
Q Consensus 618 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~-~~~~l~~h~-~~V~~l~f-spdg~-~Lasgs~-Dg~I~IW 692 (903)
.+..|...|.++.|.+.+..++.++.|+.|.+|+..... .+..+..+. ..+..+.+ ++++. +++..+. |+.+++|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 566899999999999999999999999999999998776 677777644 37888888 88887 5555455 9999999
Q ss_pred eCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeC-CCcEEEEEcCCCeeeEEeec---CceeEEEecCCCEEEEE-E
Q 002591 693 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA-A 767 (903)
Q Consensus 693 Dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~-Dg~I~iwDi~t~~~~~~~~~---~~~~v~~sp~~~~ll~~-s 767 (903)
|+.........+..|...|.+++|+|++. ++++++. |+.+++|++..++.+..+.. .+..+.|.+++..++++ +
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99864567788889999999999999988 4446664 99999999998777777664 57788899888744444 8
Q ss_pred cCCeEEEEECCCCeEEE-EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 002591 768 AENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 845 (903)
Q Consensus 768 ~dg~I~i~D~~t~~~~~-~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~ 845 (903)
.|+.|++||...+..+. .+.+|...+ ...|++++.++++++.+ .+++|+++.... .+..+..|...+.++.|.|+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~ 295 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPD 295 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecCCccEEEEEECCC
Confidence 89999999999888887 688888876 44899999888888888 999999987644 23333566889999999998
Q ss_pred CCEEEEEECCCeEEEEECCCCcEE-EEc--cCCCCEEEEEEecCCCEEEEE-ecCCcEEEcC
Q 002591 846 YPSLLVIGCYQSLELWNMSENKTM-TLT--AHEGLIAALAVSTETGYVASA-SHDKFVKLWK 903 (903)
Q Consensus 846 g~~l~t~s~dg~I~vwdl~~~~~~-~~~--~h~~~V~sl~~spdg~~LaSg-s~DG~I~IWd 903 (903)
+..+++++.|+.+.+||+...... ... .|...|..+.|.+++..++.+ ..|+.+++|+
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 888998999988999999888766 333 788889999994332455555 6888898885
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.7e-19 Score=191.95 Aligned_cols=242 Identities=19% Similarity=0.267 Sum_probs=198.1
Q ss_pred ceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEE
Q 002591 656 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 735 (903)
Q Consensus 656 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~i 735 (903)
.+-..+++|++.|.||...|.|.+|++|+.||+|+||.+.+ +.|++++. ..+.|.||+|+|.....+++...+..+.|
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEE
Confidence 34456789999999999999999999999999999999998 88888876 45689999999987765545444555655
Q ss_pred EEcCCCe---------------------------------------eeE-EeecCceeEEEecCCCEEEEEEcC---CeE
Q 002591 736 WSINNGS---------------------------------------CTR-VFKGGTAQMRFQPHLGRYLAAAAE---NVV 772 (903)
Q Consensus 736 wDi~t~~---------------------------------------~~~-~~~~~~~~v~~sp~~~~ll~~s~d---g~I 772 (903)
.+..-|. |+. .....+..+.|+..|.+|++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 5543221 010 112245678899999999998775 479
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 002591 773 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 852 (903)
Q Consensus 773 ~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~ 852 (903)
.|+++...+....|....+.|.++.|+|...+|++++...|+|||+... ..++.+......|..++.||.|..|+++
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence 9999988877777766778899999999999999999999999999765 5555555557789999999999999999
Q ss_pred ECCCeEEEEECCCCcEE--EEccCCCCEEEEEEecCCCEEEEEecCCcEEEc
Q 002591 853 GCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 853 s~dg~I~vwdl~~~~~~--~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
+.|+.++.||+.-.... ++..|...|++++|++.-.+|++|+.||++.||
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 99999999999766433 788999999999999999999999999999886
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-19 Score=179.69 Aligned_cols=284 Identities=18% Similarity=0.195 Sum_probs=201.3
Q ss_pred eeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 002591 614 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVW 692 (903)
Q Consensus 614 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW 692 (903)
.+...+++|.+.|+|+.|-.++ +|.+|..-|.|++|++.+.+.+..++ .|...|+.+.--|+ ..|.+-+.|+.+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 3567788999999999998877 48899999999999999999999998 67889999998887 578888999999999
Q ss_pred eCCCCCceeEEeccCCCceEEEEecCCC-----C---eEEEEEeCC-CcEEEEEcCCCeeeEEee-------cCceeEEE
Q 002591 693 DADNPGYSLRTFMGHSASVMSLDFHPNK-----D---DLICSCDGD-GEIRYWSINNGSCTRVFK-------GGTAQMRF 756 (903)
Q Consensus 693 Dl~~~~~~~~~~~~h~~~V~sl~fsp~~-----~---~ll~sgs~D-g~I~iwDi~t~~~~~~~~-------~~~~~v~~ 756 (903)
++.. +. ....|.-.+.++.|.+.. . .+++.-++. ..+.+-|......+...+ +.+.+..+
T Consensus 83 ~ia~-s~---~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 83 TIAY-SA---FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EccC-cc---eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 9975 22 222344445555555431 1 111111100 001111211111111111 12222332
Q ss_pred ecCC--C-EEEEEEcCCeEEEEECCCCe----------EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002591 757 QPHL--G-RYLAAAAENVVSILDAETQA----------CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 822 (903)
Q Consensus 757 sp~~--~-~ll~~s~dg~I~i~D~~t~~----------~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~ 822 (903)
.... . .+++|..+|.|.+||+.++. .+.....|..+|.++.|.+.-..=++++.+ .+..|.+....
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence 2221 2 35556678999999999983 334455689999999999765555566666 88888886542
Q ss_pred -CcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEE
Q 002591 823 -EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVK 900 (903)
Q Consensus 823 -~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~ 900 (903)
....-.++....-.+..+.+-||++.+++++.|+.|+||..++...+ .+.-|.+.|.+++|+|+..++|+++.|+.|.
T Consensus 239 gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 239 GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence 11222233333556888899999999999999999999999999988 7888999999999999999999999999999
Q ss_pred EcC
Q 002591 901 LWK 903 (903)
Q Consensus 901 IWd 903 (903)
+||
T Consensus 319 LWk 321 (323)
T KOG0322|consen 319 LWK 321 (323)
T ss_pred eee
Confidence 997
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=175.67 Aligned_cols=248 Identities=16% Similarity=0.250 Sum_probs=183.4
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEE-EEEeCCCcEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVR 690 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~I~ 690 (903)
++...+.+.+|..+|+|++||+||+.|+|++.|..|++||+..+.+++.++ ...+|+.+.|+|..... +++-.+..-.
T Consensus 54 T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~ 132 (405)
T KOG1273|consen 54 TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPV 132 (405)
T ss_pred ccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcE
Confidence 444556677899999999999999999999999999999999999888886 56789999999975533 3333344455
Q ss_pred EEeCCCCCceeEEecc---CCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----CceeEEEecCCCEE
Q 002591 691 VWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRY 763 (903)
Q Consensus 691 IWDl~~~~~~~~~~~~---h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~----~~~~v~~sp~~~~l 763 (903)
+-++..+...+..... ......+..|.+.|+++ ++|...|.+.++|..+.+|+..++- .+..+.++-.+..|
T Consensus 133 vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yI-itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~l 211 (405)
T KOG1273|consen 133 VIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYI-ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFL 211 (405)
T ss_pred EEEecCCceeeccCCCccccccccccccccCCCCEE-EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEE
Confidence 5555542111111110 11112223577777755 5999999999999999999988764 45678899999999
Q ss_pred EEEEcCCeEEEEECCCC-------e--EEEEecC--CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEe
Q 002591 764 LAAAAENVVSILDAETQ-------A--CRLSLQG--HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHEL 830 (903)
Q Consensus 764 l~~s~dg~I~i~D~~t~-------~--~~~~l~~--h~~~V~sl~~spdg~~lasgs~d--~I~iwdl~s~~~~~~i~~~ 830 (903)
+.-+.|..|+.|+++.- + +.+++.. ....-.+++|+.+|.|++.++.. .++||.-..| ..++.+
T Consensus 212 iiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKIL 288 (405)
T KOG1273|consen 212 IINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKIL 288 (405)
T ss_pred EEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc---ceeeee
Confidence 99999999999998631 1 1111111 23345689999999999998876 8999999887 566666
Q ss_pred ecCC-CceEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 002591 831 SCNG-NKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 865 (903)
Q Consensus 831 ~~~~-~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~ 865 (903)
.+.. .....+.|+|-...|++. ..|.|++|....
T Consensus 289 hG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 289 HGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 6655 567889999988877766 778999998754
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.2e-18 Score=178.02 Aligned_cols=295 Identities=21% Similarity=0.292 Sum_probs=202.5
Q ss_pred ccccCCCCCceEEeeecCCCCCcCCCCcccccccCcceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--
Q 002591 576 LVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-- 653 (903)
Q Consensus 576 ~~~~gs~d~~v~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~-- 653 (903)
.++.++.|.++..|.-....... + ....+....+..|...|++|.|+|+|.+||+|+.+|.|.+|...
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~--~--------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGG--G--------DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred ceecccCccceeeeeeeecCCCC--C--------ceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 44555566666666432211110 0 02567778899999999999999999999999999999999754
Q ss_pred ------C--------CceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCC
Q 002591 654 ------T--------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 719 (903)
Q Consensus 654 ------t--------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~ 719 (903)
+ ....+.+.+|...|..++|++++.++++++.|..+++||+.. +.....+.+|...|..++|.|.
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILDDHEHYVQGVAWDPL 176 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeeccccccccceeecchh
Confidence 2 345567789999999999999999999999999999999998 8889999999999999999998
Q ss_pred CCeEEEEEeCCCcEEEEEcCCCeeeEEeecCcee-EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEE
Q 002591 720 KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 798 (903)
Q Consensus 720 ~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~-v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~ 798 (903)
+.+ +++-+.|...+.+.+.....+......+.. ..+... .....++|--++.+ .-...++|
T Consensus 177 ~qy-v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~--------e~~s~rLfhDeTlk---------sFFrRlsf 238 (434)
T KOG1009|consen 177 NQY-VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER--------EGKSTRLFHDETLK---------SFFRRLSF 238 (434)
T ss_pred hhh-hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCC--------CcceeeeeecCchh---------hhhhhccc
Confidence 664 557788887777777655544333210000 000000 11123333333222 23456788
Q ss_pred cCCCCEEEEEeCC----------eEEEEECCCCCCcceEEEeecCCCceEEEEEeC-----------------CCCEEEE
Q 002591 799 DPSGELLASVSED----------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-----------------TYPSLLV 851 (903)
Q Consensus 799 spdg~~lasgs~d----------~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp-----------------~g~~l~t 851 (903)
+|+|.++++.+.- ..++|+-... ...+..+.+-......+.|+| -.+.+++
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l--~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL--KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccc--cCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 8888887765421 2344443322 223333333344444444433 2344566
Q ss_pred EECCCeEEEEECCCCcEE--EEccCCCCEEEEEEecCCCEEEEEecCCcEEE
Q 002591 852 IGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKL 901 (903)
Q Consensus 852 ~s~dg~I~vwdl~~~~~~--~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~I 901 (903)
....+.|+|||..+.+.+ .-.-|-..|++++|++||.+|+..|.||...+
T Consensus 317 iAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 317 IATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 666779999999998877 44468999999999999999999999997653
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-20 Score=207.19 Aligned_cols=275 Identities=21% Similarity=0.373 Sum_probs=217.5
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I 691 (903)
..+.++.+.+|...|+|+.|...|.++++|+.|..|+||..+++.++..+++|.+.|++++.+.+...+++++.|..|++
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-----ee--cCceeEEEecCCCEEE
Q 002591 692 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-----FK--GGTAQMRFQPHLGRYL 764 (903)
Q Consensus 692 WDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~-----~~--~~~~~v~~sp~~~~ll 764 (903)
|.+.+ +.++..+.+|++.|++|+|+|.- +.+.||++++||.+-...+.. +. .-+..+.+...+..++
T Consensus 259 Wrl~~-~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 259 WRLPD-GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL 332 (1113)
T ss_pred EecCC-CchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence 99998 88899999999999999999863 778899999999982211111 11 1233455666777888
Q ss_pred EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEE
Q 002591 765 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 842 (903)
Q Consensus 765 ~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg-~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~ 842 (903)
+++.|+.-..|...... .+...+.-+.++.+- .+.+++-.+ .+++|++.++ ..++.+.+|...+..+.+
T Consensus 333 Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~ 403 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDV 403 (1113)
T ss_pred cccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeee
Confidence 88888887777654321 122222222333232 355555556 8999999887 566777788899999999
Q ss_pred eCCCCEE-EEEECCCeEEEEECCCCcEE--EEccCCCCEEEEEEecCCCEEEEEecCCcEEEc
Q 002591 843 HPTYPSL-LVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 843 sp~g~~l-~t~s~dg~I~vwdl~~~~~~--~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
||-...+ ..++.||.+.|||+-.+..+ ...+ .+.+...+|++||..++...+-|.++|.
T Consensus 404 Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 404 HPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred cCCCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence 9976554 56789999999999998877 3334 5567778999999988888777887774
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-18 Score=180.79 Aligned_cols=233 Identities=15% Similarity=0.345 Sum_probs=180.7
Q ss_pred EEEEECC-------CCCEEEEEeCCCcEEEEeCCCCC--ceeE------------------EeccCCCceEEEEecCCCC
Q 002591 669 TDVRFSP-------SMPRLATSSFDKTVRVWDADNPG--YSLR------------------TFMGHSASVMSLDFHPNKD 721 (903)
Q Consensus 669 ~~l~fsp-------dg~~Lasgs~Dg~I~IWDl~~~~--~~~~------------------~~~~h~~~V~sl~fsp~~~ 721 (903)
.|+.|.. .|+++|.|+.|-.|.|||++-.. .+.. .-.+|++.|.++.|+..-+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5667643 36799999999999999986211 1111 1236999999999999989
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeeEEee---cCceeEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEE
Q 002591 722 DLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVC 797 (903)
Q Consensus 722 ~ll~sgs~Dg~I~iwDi~t~~~~~~~~---~~~~~v~~sp~~~-~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~ 797 (903)
++|++|+.|.+|++||+.++++..++. ..+.++.|++... .+++|+.|++|.++|.|........-...+.|..++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 999999999999999999999988775 4678899999874 577788899999999995433222222457899999
Q ss_pred EcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEECCCeEEEEECCCCcEEEEccC
Q 002591 798 WDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENKTMTLTAH 874 (903)
Q Consensus 798 ~spdg~-~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~-~l~t~s~dg~I~vwdl~~~~~~~~~~h 874 (903)
|.+... .++++.+| +|+-+|+|... +++..+..|...|.+++++..-+ .+++++.|+.|++|++..........|
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~ 414 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH 414 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc
Confidence 999766 55666666 99999999764 88999999999999999988654 577889999999999876655433333
Q ss_pred C---CCEEEEEEecCCC-EEEEEecCCcEEEcC
Q 002591 875 E---GLIAALAVSTETG-YVASASHDKFVKLWK 903 (903)
Q Consensus 875 ~---~~V~sl~~spdg~-~LaSgs~DG~I~IWd 903 (903)
. +...|+++.|+-. +++.|+..+.++|||
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEee
Confidence 2 3466677777655 577788888899997
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=183.01 Aligned_cols=136 Identities=23% Similarity=0.406 Sum_probs=110.3
Q ss_pred EcCCeEEEEECCCCeEE-----EEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCC----cceEEEeecCCC
Q 002591 767 AAENVVSILDAETQACR-----LSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSE----GECVHELSCNGN 835 (903)
Q Consensus 767 s~dg~I~i~D~~t~~~~-----~~l~~h~~~V~sl~~sp-dg~~lasgs~d-~I~iwdl~s~~~----~~~i~~~~~~~~ 835 (903)
+..|.|-||+++..-.+ -.+ -....|+.+.|+| |...|+++++| .|++|.+..+.. ...-..+..|..
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred CCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 33567777777653111 111 1346799999999 56689999988 999999986532 334567788999
Q ss_pred ceEEEEEeCC-CCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 836 KFHSCVFHPT-YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 836 ~i~si~~sp~-g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.|+++.|||- .+.|++++.|-+|++||+.+.+.. .+.+|.+.|.+++|+|||+.+++.|.||+|++|+
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 9999999994 467889999999999999999877 8999999999999999999999999999999985
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=178.03 Aligned_cols=267 Identities=16% Similarity=0.291 Sum_probs=191.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECC--CCCEEEEEeCCCcEEEEeCCCCCce-eEEeccCC-Cce
Q 002591 636 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDADNPGYS-LRTFMGHS-ASV 711 (903)
Q Consensus 636 ~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~IWDl~~~~~~-~~~~~~h~-~~V 711 (903)
..+|++...|.|+|||..++..+..|+++...++.++|.. ....+++|+.||+|++||++...+. ...+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5789999999999999999999999999999999999977 4568999999999999999975443 34455555 455
Q ss_pred EEEEecCCCCeEEEEEeC----CCcEEEEEcCCCee-eEE----eecCceeEEEecCC-CEEEEEEcCCeEEEEECCCCe
Q 002591 712 MSLDFHPNKDDLICSCDG----DGEIRYWSINNGSC-TRV----FKGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQA 781 (903)
Q Consensus 712 ~sl~fsp~~~~ll~sgs~----Dg~I~iwDi~t~~~-~~~----~~~~~~~v~~sp~~-~~ll~~s~dg~I~i~D~~t~~ 781 (903)
.|++.... ..++++|.. |-.|.+||++..+. ++. +...+++++|+|.+ +.+++|+.||.|.+||++...
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 56665434 447766643 67899999998765 444 34578999999988 567778889999999998652
Q ss_pred ---EEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEee---------cCCCceEEEEEeCCCC
Q 002591 782 ---CRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELS---------CNGNKFHSCVFHPTYP 847 (903)
Q Consensus 782 ---~~~~l~~h~~~V~sl~~spdg~-~lasgs~d-~I~iwdl~s~~~~~~i~~~~---------~~~~~i~si~~sp~g~ 847 (903)
.+.....|...|.++.|..++. .|.+-+.. +..+|+++.+.....+..-. ..-..+..+....+..
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 2223334778899999998873 45555555 99999998774221111100 0011222333334555
Q ss_pred EEEEEEC-CCeEEEEECC---CCcEE----EEc-cCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 848 SLLVIGC-YQSLELWNMS---ENKTM----TLT-AHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 848 ~l~t~s~-dg~I~vwdl~---~~~~~----~~~-~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.+++++. .++..++-+. ++... .+. +|...|+++.|...+.+++||++||.|.+|+
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 6666655 4555555433 33222 344 4788899999999999999999999999996
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-18 Score=178.21 Aligned_cols=206 Identities=26% Similarity=0.425 Sum_probs=165.3
Q ss_pred eccCCCCeEEEEECCCCC--EEEEEeCCCcEEEEeCCC---------------CCceeEEeccCCCceEEEEecCCCCeE
Q 002591 661 LEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDADN---------------PGYSLRTFMGHSASVMSLDFHPNKDDL 723 (903)
Q Consensus 661 l~~h~~~V~~l~fspdg~--~Lasgs~Dg~I~IWDl~~---------------~~~~~~~~~~h~~~V~sl~fsp~~~~l 723 (903)
...|.+.|+.++-++-++ ++++=+..|.|.|||+.. ...++.++.+|...=+.|+|+|-....
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 346788888888877654 455556789999999852 134577888999989999999865444
Q ss_pred EEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC
Q 002591 724 ICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE 803 (903)
Q Consensus 724 l~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~ 803 (903)
+++|..-+.|++|...++..... ...|.+|+..|..++|+|..+
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd------------------------------------~~Pf~gH~~SVEDLqWSptE~ 270 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVD------------------------------------QRPFTGHTKSVEDLQWSPTED 270 (440)
T ss_pred cccCccccceEeeeeccCceeec------------------------------------CccccccccchhhhccCCccC
Confidence 55787778888887766542110 113456999999999999766
Q ss_pred -EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcE---E-EEccCCCC
Q 002591 804 -LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT---M-TLTAHEGL 877 (903)
Q Consensus 804 -~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~---~-~~~~h~~~ 877 (903)
+|++|+.| +|+|||+|.+....++.. +.|...|+.|.|+....+|++|+.||+++|||++..+. + .+.-|..+
T Consensus 271 ~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p 349 (440)
T KOG0302|consen 271 GVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP 349 (440)
T ss_pred ceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence 89999999 999999999877677766 78899999999999999999999999999999986543 3 88899999
Q ss_pred EEEEEEecC-CCEEEEEecCCcEEEcC
Q 002591 878 IAALAVSTE-TGYVASASHDKFVKLWK 903 (903)
Q Consensus 878 V~sl~~spd-g~~LaSgs~DG~I~IWd 903 (903)
|++|.|+|. ...|++++.|..|.|||
T Consensus 350 ItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 350 ITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred eeEEEeccccCceEEeccCCCcEEEEE
Confidence 999999985 45788889999999997
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=168.07 Aligned_cols=299 Identities=19% Similarity=0.243 Sum_probs=203.6
Q ss_pred eEEeeecCCCCCcCCCCcccccccCcceeeeeEeecCCCCeEEEEEcCCC-CEEEEEeCC-------CcEEEEECCC---
Q 002591 586 VESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHD-------KKAVLWHTDT--- 654 (903)
Q Consensus 586 v~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~D-------g~V~vWd~~t--- 654 (903)
-.+|+........+.-+..++...+...-..+.|..|.+.|+.|+-+|-. ++|+|+..+ ..+.||.+..
T Consensus 26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~ 105 (370)
T KOG1007|consen 26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG 105 (370)
T ss_pred ceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence 33455444444444444455554444555566788899999999999955 466665432 2478998753
Q ss_pred ------CceeEEec-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEec-----cCCCceEEEEecCC-CC
Q 002591 655 ------LKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPN-KD 721 (903)
Q Consensus 655 ------~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~-----~h~~~V~sl~fsp~-~~ 721 (903)
.+++..+. .+-+.|.||.|.|++..|++-. |..|.+|++.+..+.+..+. ++....++-+|+|. ..
T Consensus 106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence 23344444 4667899999999999998877 88899999998555333332 35667888999983 23
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeeEEeec-C---ceeEEEecCCCEEE-EEEcCCeEEEEECCCC-eEEEEecCCCCCeEE
Q 002591 722 DLICSCDGDGEIRYWSINNGSCTRVFKG-G---TAQMRFQPHLGRYL-AAAAENVVSILDAETQ-ACRLSLQGHTKPIDS 795 (903)
Q Consensus 722 ~ll~sgs~Dg~I~iwDi~t~~~~~~~~~-~---~~~v~~sp~~~~ll-~~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~s 795 (903)
+.+++ ..|+++..||+++.++...++. + +..+.|.|+..+++ +++.||.|+|||.+.. .++.++.+|..+|.+
T Consensus 185 nqv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 185 NQVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred ceEEE-eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 34434 4489999999999887766653 3 66788999886654 5566899999999875 678899999999999
Q ss_pred EEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEEEEcc
Q 002591 796 VCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 873 (903)
Q Consensus 796 l~~spdg~-~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~~ 873 (903)
+.|+|... +|.+++.| .|.+|...+-.... .+.|..+....-.......++ -+..|.+.++..
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~-------------qi~~~~dese~e~~dseer~k--pL~dg~l~tyde 328 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ-------------QIEFEDDESESEDEDSEERVK--PLQDGQLETYDE 328 (370)
T ss_pred EEecCccceEEEecCCCceeEEEecccccccc-------------ccccccccccCcchhhHHhcc--cccccccccccc
Confidence 99999655 88888888 89999875432111 111111100000000001222 344555567889
Q ss_pred CCCCEEEEEEecCCC-EEEEEecCCcEEE
Q 002591 874 HEGLIAALAVSTETG-YVASASHDKFVKL 901 (903)
Q Consensus 874 h~~~V~sl~~spdg~-~LaSgs~DG~I~I 901 (903)
|++.|++++|+.-.. +||+-+.||+|.|
T Consensus 329 hEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 329 HEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred cccceEEEeeccCCCeeEEEeccCceEEe
Confidence 999999999987555 5788899999876
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-16 Score=184.62 Aligned_cols=279 Identities=15% Similarity=0.222 Sum_probs=208.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC---CCCeEEEEECC--CCCEEEEEeCCCcEEEEeCCCC
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH---SSLITDVRFSP--SMPRLATSSFDKTVRVWDADNP 697 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h---~~~V~~l~fsp--dg~~Lasgs~Dg~I~IWDl~~~ 697 (903)
...-..+.|+|-...++++...-.|+|||.+.++.+..|..+ ...|+.+.+-. |..++++|+.||.||||+-...
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 335667889998889999987789999999999988888754 45789999865 3458999999999999975432
Q ss_pred C----ceeEEeccC-------CCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCcee----EE-EecCCC
Q 002591 698 G----YSLRTFMGH-------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ----MR-FQPHLG 761 (903)
Q Consensus 698 ~----~~~~~~~~h-------~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~----v~-~sp~~~ 761 (903)
. +.+..+.+- .+.=.-++|....++++++|+ -..|+|||.....++..+..+..+ +. ....++
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 2 223222211 111133678877777775554 789999999998888776543222 22 223468
Q ss_pred EEEEEEcCCeEEEEECCCC---eEEEEecCCCCC--eEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecC-
Q 002591 762 RYLAAAAENVVSILDAETQ---ACRLSLQGHTKP--IDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCN- 833 (903)
Q Consensus 762 ~ll~~s~dg~I~i~D~~t~---~~~~~l~~h~~~--V~sl~~spdg~-~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~- 833 (903)
.+++|..||.|++||.+.. ..+...+.|... |..+.+-+.|. .|++|+.+ .|++||++.......+.....-
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence 8999999999999999875 356677788887 99999999776 48888888 9999999985222222222211
Q ss_pred -CCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEEEEcc-------CCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 834 -GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-------HEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 834 -~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~~-------h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+...+++..|+..+.+++|+. +.|+||++....+..+.. ..+.+.|++|+|..-++|+|+.|.+|.||.
T Consensus 1303 yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred cCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 335899999999998888888 999999998776553333 345789999999999999999999999983
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-18 Score=185.32 Aligned_cols=291 Identities=19% Similarity=0.305 Sum_probs=227.6
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCCeEEEEECCC--CCEEEEEeCCCc
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPS--MPRLATSSFDKT 688 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~-~h~~~V~~l~fspd--g~~Lasgs~Dg~ 688 (903)
.+.....|..|.+.|..|.|...|..|++|+.|..|.+||+.++..+..+. +|...|.-..|-|. ...|++++.||.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 455667789999999999999999999999999999999999888777765 79999998889875 457999999999
Q ss_pred EEEEeCCCCCce--eEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---------cCceeEEEe
Q 002591 689 VRVWDADNPGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTAQMRFQ 757 (903)
Q Consensus 689 I~IWDl~~~~~~--~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~---------~~~~~v~~s 757 (903)
|++=.+...+.+ ...+..|.+.|..++.-|+..+-|.+|+.|+.|.-+|++.+.....+. .....++..
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 999888764544 345667999999999999999999999999999999998875333221 134567788
Q ss_pred cCCC-EEEEEEcCCeEEEEECCCCeEE------EEec------CCCCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCC
Q 002591 758 PHLG-RYLAAAAENVVSILDAETQACR------LSLQ------GHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSE 823 (903)
Q Consensus 758 p~~~-~ll~~s~dg~I~i~D~~t~~~~------~~l~------~h~~~V~sl~~spdg~-~lasgs~d~I~iwdl~s~~~ 823 (903)
|... .+++++.|-.+++||.+.-... ..+- .....|++++|+.++. +|++..+..|++|.-..+..
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 8875 7888888999999998754221 2221 2345699999996655 77766666999995433211
Q ss_pred --c-------ceEE-EeecCCCc--eEEEE-EeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCE
Q 002591 824 --G-------ECVH-ELSCNGNK--FHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 889 (903)
Q Consensus 824 --~-------~~i~-~~~~~~~~--i~si~-~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~ 889 (903)
. ..++ .+++|.+. |..+- |-|...|+++|+.-|.|.||+-.+++++ .+.+....|+||.=+|--.+
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv 450 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV 450 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence 0 1222 25666543 55554 5678888999888899999999999988 55565669999999999999
Q ss_pred EEEEecCCcEEEc
Q 002591 890 VASASHDKFVKLW 902 (903)
Q Consensus 890 LaSgs~DG~I~IW 902 (903)
||+++-|..|+||
T Consensus 451 LAsSGid~DVKIW 463 (559)
T KOG1334|consen 451 LASSGIDHDVKIW 463 (559)
T ss_pred hhccCCccceeee
Confidence 9999999999999
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-16 Score=172.86 Aligned_cols=263 Identities=12% Similarity=0.194 Sum_probs=181.3
Q ss_pred EEEEeCCCcEEEEECCC-Cc--eeEEeccCCCCeEEEEECCCCCEEEEEeC-CCcEEEEeCCCCCce--eEEeccCCCce
Q 002591 638 LATGGHDKKAVLWHTDT-LK--SKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYS--LRTFMGHSASV 711 (903)
Q Consensus 638 Latgs~Dg~V~vWd~~t-~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~IWDl~~~~~~--~~~~~~h~~~V 711 (903)
+++...++.|.+||+.+ ++ .+..+. +.+....++++|++++|++++. ++.|.+|+++..+.. +.... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 34446789999999963 33 444454 3456788999999999877754 888999999743332 22222 33456
Q ss_pred EEEEecCCCCeEEEEEeCCCcEEEEEcCCC----eeeEEeec--CceeEEEecCCCEEEEEEc-CCeEEEEECCCCeEEE
Q 002591 712 MSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRL 784 (903)
Q Consensus 712 ~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~----~~~~~~~~--~~~~v~~sp~~~~ll~~s~-dg~I~i~D~~t~~~~~ 784 (903)
..++|+|+++.++++...++.|.+||+.+. +.+..+.+ +...+.++|++++++++.. ++.|.+||+++...+.
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 789999999988877767999999999742 22233322 4566789999998877665 6899999998743221
Q ss_pred -------EecCCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCC-CCcceEEEeecC------CCceEEEEEeCCCCE
Q 002591 785 -------SLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSG-SEGECVHELSCN------GNKFHSCVFHPTYPS 848 (903)
Q Consensus 785 -------~l~~h~~~V~sl~~spdg~~lasgs~-d-~I~iwdl~s~-~~~~~i~~~~~~------~~~i~si~~sp~g~~ 848 (903)
.+. .......++|+|+|+++++++. + +|.+||+... ...+.+..+... ......+.++|++++
T Consensus 163 ~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 163 AQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred ccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 111 1234568999999999888876 3 9999999742 122333333221 112346889999999
Q ss_pred EEEEEC-CCeEEEEECCCCc-EEEEccC---CCCEEEEEEecCCCEEEEEec-CCcEEEcC
Q 002591 849 LLVIGC-YQSLELWNMSENK-TMTLTAH---EGLIAALAVSTETGYVASASH-DKFVKLWK 903 (903)
Q Consensus 849 l~t~s~-dg~I~vwdl~~~~-~~~~~~h---~~~V~sl~~spdg~~LaSgs~-DG~I~IWd 903 (903)
++++.. ++.|.+|++.... ...+..+ ......+.|+|+|++|++++. +++|.+|+
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 999865 6799999986543 2222222 235668999999999998775 88999984
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-15 Score=170.50 Aligned_cols=261 Identities=13% Similarity=0.156 Sum_probs=180.6
Q ss_pred CCCcccccccCcceeeeeEeecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCce--eEEeccCCCCeEEEEECC
Q 002591 600 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTD-TLKS--KTNLEEHSSLITDVRFSP 675 (903)
Q Consensus 600 ~~~~~~d~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs-~Dg~V~vWd~~-t~~~--~~~l~~h~~~V~~l~fsp 675 (903)
.....|++...-.++.+..+.. .+....++++|++++|++++ .++.|.+|+++ +++. +.... .......++|+|
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~ 89 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH 89 (330)
T ss_pred CCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC
Confidence 3344455432225566666653 46678899999999887765 47889999987 3332 22222 334567899999
Q ss_pred CCCEEEEEeC-CCcEEEEeCCCCCce---eEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeE------
Q 002591 676 SMPRLATSSF-DKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR------ 745 (903)
Q Consensus 676 dg~~Lasgs~-Dg~I~IWDl~~~~~~---~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~------ 745 (903)
++++|++++. ++.|.+|++++.+.. +..+. +.....+++|+|+++.+++++..++.|++||+.+...+.
T Consensus 90 ~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~ 168 (330)
T PRK11028 90 QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE 168 (330)
T ss_pred CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence 9999988875 889999999753322 22222 334567789999999888888888999999998633221
Q ss_pred -Ee--ecCceeEEEecCCCEEEEEEc-CCeEEEEECCC--C--eEEEEecCC------CCCeEEEEEcCCCCEEEEEeCC
Q 002591 746 -VF--KGGTAQMRFQPHLGRYLAAAA-ENVVSILDAET--Q--ACRLSLQGH------TKPIDSVCWDPSGELLASVSED 811 (903)
Q Consensus 746 -~~--~~~~~~v~~sp~~~~ll~~s~-dg~I~i~D~~t--~--~~~~~l~~h------~~~V~sl~~spdg~~lasgs~d 811 (903)
.. ..+...+.|+|++.+++++.. ++.|.+||++. + +.+..+..+ ......+.|+|++++++++...
T Consensus 169 ~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~ 248 (330)
T PRK11028 169 VTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT 248 (330)
T ss_pred eecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC
Confidence 11 123467899999999988876 89999999973 3 333333322 1223468899999988888653
Q ss_pred --eEEEEECCCCC-CcceEEEeecCCCceEEEEEeCCCCEEEEEEC-CCeEEEEECC
Q 002591 812 --SVRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS 864 (903)
Q Consensus 812 --~I~iwdl~s~~-~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~-dg~I~vwdl~ 864 (903)
.|.+|++.... ..+.+..... ......+.++|+|++|+++.. +++|.+|+++
T Consensus 249 ~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 249 ASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 89999996543 2223333332 234567899999999998876 7899999874
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-16 Score=166.51 Aligned_cols=210 Identities=16% Similarity=0.289 Sum_probs=172.9
Q ss_pred eEEeccCCCCeEEEEECCC-CCEEEEEeCCCcEEEEeCCCCC------ceeEEeccCCCceEEEEecCCCCeEEEEEeCC
Q 002591 658 KTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 730 (903)
Q Consensus 658 ~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IWDl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D 730 (903)
.-.+.+|+++|.+++|+|- ...||+||.|.+|.||.+-..+ ..+..+.+|...|--+.|||.-.++|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 3446799999999999995 4578999999999999986533 45778899999999999999999999999999
Q ss_pred CcEEEEEcCCCeeeEEee--cCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC-eEEEEEcCCCCEEEE
Q 002591 731 GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLAS 807 (903)
Q Consensus 731 g~I~iwDi~t~~~~~~~~--~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~-V~sl~~spdg~~las 807 (903)
.+|.+||+.+++.+-.+. .-+.+++|+.+|..+++++.|..|+|||.++++.+..-.+|.+. -..+.|-.+|.++.+
T Consensus 154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 999999999999766654 44678999999999999999999999999999999988888763 345668888886666
Q ss_pred EeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-CCCeEEEEECCCCcE
Q 002591 808 VSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKT 868 (903)
Q Consensus 808 gs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s-~dg~I~vwdl~~~~~ 868 (903)
|... .+-+||..+.++.-.+.++.. .+.|.---|.++...++.++ .|+.|+.|.+.....
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 6433 699999988877666666655 55566666888888776555 688999999987763
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-17 Score=166.61 Aligned_cols=240 Identities=20% Similarity=0.335 Sum_probs=182.0
Q ss_pred cCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCC-CEEEEEeCCCcEEEEeCC
Q 002591 621 ASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDAD 695 (903)
Q Consensus 621 ~H~~~V~~l~fspd----g~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~IWDl~ 695 (903)
.|....+.++|+-| ..+||+|+.-|.|+|.|+.++++...+.+|...|+.|.|.|+. .+|+++|.|..||+|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 46777888888754 3489999999999999999999999999999999999999986 488999999999999999
Q ss_pred CCCceeEEec---cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEE------e---------ec--------
Q 002591 696 NPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------F---------KG-------- 749 (903)
Q Consensus 696 ~~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~------~---------~~-------- 749 (903)
+ ..++..|- +|.+.|.+++|+.++. .|++|+.|..|++|++...+.... + ..
T Consensus 167 ~-~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 T-DVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred C-CeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8 77777664 6999999999999988 556999999999999984331111 1 00
Q ss_pred --------CceeEEEecCCCEEEEEEcCCeEEEEEC-CCCe-------------EEEEecCCCCCeEEE--EEcCCCCEE
Q 002591 750 --------GTAQMRFQPHLGRYLAAAAENVVSILDA-ETQA-------------CRLSLQGHTKPIDSV--CWDPSGELL 805 (903)
Q Consensus 750 --------~~~~v~~sp~~~~ll~~s~dg~I~i~D~-~t~~-------------~~~~l~~h~~~V~sl--~~spdg~~l 805 (903)
.+.+++| -++++++-+.++.|..|.. +-.+ .+.++.-....|.-| +|++-.++|
T Consensus 245 st~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 0111111 1367777788999999976 2111 222333333445554 456667899
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEe-ecCCCceEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002591 806 ASVSED-SVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 806 asgs~d-~I~iwdl~s~~~~~~i~~~-~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~ 864 (903)
|.|... .|++||++..+...+.... ......|...+|+.|+..|+..+.|++|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999888 9999999987664333222 2235678999999999999999999999999853
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-15 Score=178.47 Aligned_cols=292 Identities=18% Similarity=0.223 Sum_probs=209.1
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-------CceeEEeccCCCCeEEEEECCCCCEEEEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDT-------LKSKTNLEEHSSLITDVRFSPSMPRLATS 683 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~V~vWd~~t-------~~~~~~l~~h~~~V~~l~fspdg~~Lasg 683 (903)
....+..+..|...|..++.++.. .++++|+.||+|+|||+.+ .+...++......+.++.+.+.+..+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 556788899999999999988755 8999999999999999763 12334444567889999999999999999
Q ss_pred eCCCcEEEEeCCCCC------ceeEEeccC-CCc-eEEEEecCCCC-eEEEEEeCCCcEEEEEcCCCeeeEEee-----c
Q 002591 684 SFDKTVRVWDADNPG------YSLRTFMGH-SAS-VMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFK-----G 749 (903)
Q Consensus 684 s~Dg~I~IWDl~~~~------~~~~~~~~h-~~~-V~sl~fsp~~~-~ll~sgs~Dg~I~iwDi~t~~~~~~~~-----~ 749 (903)
+.||.|++.+++... ...+....+ .+. |..-+|..... .+++.+...+.|..||+++.......+ +
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 999999999997511 111222222 223 33334433333 366677788999999999876554433 4
Q ss_pred CceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec-CCCCCeEEEEEcCCC---CEEEEEeC-C--eEEEEECCCCC
Q 002591 750 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSG---ELLASVSE-D--SVRVWTVGSGS 822 (903)
Q Consensus 750 ~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~-~h~~~V~sl~~spdg---~~lasgs~-d--~I~iwdl~s~~ 822 (903)
-+++++.+|.+.+++.|...|.+.+||++-+.++..+. .+..+|+.++.+|-. .+.++++. . .|.+|++.++.
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 67889999999999999999999999999988887765 355778888877733 35555544 3 89999999873
Q ss_pred CcceEEEe----------e------cCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-----------------
Q 002591 823 EGECVHEL----------S------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----------------- 869 (903)
Q Consensus 823 ~~~~i~~~----------~------~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~----------------- 869 (903)
....+..- . .+......+.+...+..+++|+.|..|+.||....+..
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s 1356 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSES 1356 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchh
Confidence 32222111 0 11112344556667788999999999999998542111
Q ss_pred ----------------------------------------EEccCCCCEEEEEEecC-CCEEEEEecCCcEEEcC
Q 002591 870 ----------------------------------------TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 903 (903)
Q Consensus 870 ----------------------------------------~~~~h~~~V~sl~~spd-g~~LaSgs~DG~I~IWd 903 (903)
.-..|.+.|+++++... -.+|++++.||.|+||+
T Consensus 1357 ~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1357 YDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00117778888877543 45899999999999996
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.5e-16 Score=157.54 Aligned_cols=238 Identities=23% Similarity=0.359 Sum_probs=169.7
Q ss_pred ceeeeeEeecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECC---------CCceeEEeccCCCCeEEEEECCC--CC
Q 002591 612 SFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD---------TLKSKTNLEEHSSLITDVRFSPS--MP 678 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fsp--dg~~Latgs~Dg~V~vWd~~---------t~~~~~~l~~h~~~V~~l~fspd--g~ 678 (903)
+|......+.|.+.|..|.|.+ -|..+|+++.|++|.||.-. ......++......|++|.|.|. |-
T Consensus 48 ~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGL 127 (361)
T KOG2445|consen 48 TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGL 127 (361)
T ss_pred ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcce
Confidence 7888899999999999999965 68999999999999999741 12345566778889999999986 66
Q ss_pred EEEEEeCCCcEEEEeCCCCCcee-----E-------EeccCCCceEEEEecCCC--CeEEEEEeCC-----CcEEEEEcC
Q 002591 679 RLATSSFDKTVRVWDADNPGYSL-----R-------TFMGHSASVMSLDFHPNK--DDLICSCDGD-----GEIRYWSIN 739 (903)
Q Consensus 679 ~Lasgs~Dg~I~IWDl~~~~~~~-----~-------~~~~h~~~V~sl~fsp~~--~~ll~sgs~D-----g~I~iwDi~ 739 (903)
.||+++.||+||||+.-+..... . ....+.....|+.|++.. ..+|+.|+.+ +.++||...
T Consensus 128 klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~ 207 (361)
T KOG2445|consen 128 KLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYN 207 (361)
T ss_pred EEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEec
Confidence 89999999999999987633211 1 111355566777777541 2255555533 234444332
Q ss_pred CCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC----CCEEEEEeCCeEEE
Q 002591 740 NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS----GELLASVSEDSVRV 815 (903)
Q Consensus 740 t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd----g~~lasgs~d~I~i 815 (903)
.. .+....+.++.+|..+|+.|+|.|+ ..+||+++.|.|+|
T Consensus 208 e~-----------------------------------~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I 252 (361)
T KOG2445|consen 208 EN-----------------------------------GRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRI 252 (361)
T ss_pred CC-----------------------------------cceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEE
Confidence 21 1112344566789999999999995 34788888888999
Q ss_pred EECCCC-----------------CCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCC---CcEEEEccCC
Q 002591 816 WTVGSG-----------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE---NKTMTLTAHE 875 (903)
Q Consensus 816 wdl~s~-----------------~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~---~~~~~~~~h~ 875 (903)
|.++.. -....+..+..|.+.|..+.|+-.|..|++.+.||.|++|...- .++.....-+
T Consensus 253 ~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 253 FKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred EEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEecc
Confidence 999741 12345667888999999999999999999999999999997643 2344333334
Q ss_pred CCEEEEEEe
Q 002591 876 GLIAALAVS 884 (903)
Q Consensus 876 ~~V~sl~~s 884 (903)
+.|....|.
T Consensus 333 ~~~~~~~~~ 341 (361)
T KOG2445|consen 333 GSVTKPDFS 341 (361)
T ss_pred CCCCCcccc
Confidence 444444443
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-17 Score=180.82 Aligned_cols=243 Identities=21% Similarity=0.285 Sum_probs=177.9
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC-------CCceeEEeccCCCceEEEEecCCCCeEEEEEeCCC
Q 002591 659 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 731 (903)
Q Consensus 659 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~-------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg 731 (903)
.++..|.+.|+.+.|.+....|++++.||+|.+|++.. .-+.+.+|.+|.++|.|+++.+++..++ +|+.||
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y-sgg~Dg 366 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY-SGGIDG 366 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE-eeccCc
Confidence 37778999999999999999999999999999999932 1246789999999999999999987655 999999
Q ss_pred cEEEEEcCCC----------eeeEEeecC---ceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCC--CCCeEEE
Q 002591 732 EIRYWSINNG----------SCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH--TKPIDSV 796 (903)
Q Consensus 732 ~I~iwDi~t~----------~~~~~~~~~---~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h--~~~V~sl 796 (903)
+|+.|++... .....+.++ +..+.++....+|+.++.||+|++|+.....+ .++... .+.-.++
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV 445 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence 9999966421 112233333 44577888889999999999999999877655 333221 1223344
Q ss_pred EEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEee----cCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-
Q 002591 797 CWDPSGELLASVSED--SVRVWTVGSGSEGECVHELS----CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM- 869 (903)
Q Consensus 797 ~~spdg~~lasgs~d--~I~iwdl~s~~~~~~i~~~~----~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~- 869 (903)
.|......+..++.. .-.++++........+.... .....+..+.++|.....+++..|+.|+++|..+++++
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence 444322111111111 22233333221111111110 11245778899999999999999999999999999988
Q ss_pred EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 870 TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 870 ~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
...+|...|+++++.|+|.+|+++++||.|++|+
T Consensus 526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred heeeccceecceeecCCCceEEeecCCceeehhh
Confidence 8889999999999999999999999999999996
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-16 Score=157.48 Aligned_cols=238 Identities=20% Similarity=0.377 Sum_probs=177.8
Q ss_pred cCCCCeEEEEEcCCCC-----EEEEEeCCCcEEEEECCCCceeEE---------eccCCCCeEEEEECC-CCCEEEEEeC
Q 002591 621 ASTSKVICCHFSSDGK-----LLATGGHDKKAVLWHTDTLKSKTN---------LEEHSSLITDVRFSP-SMPRLATSSF 685 (903)
Q Consensus 621 ~H~~~V~~l~fspdg~-----~Latgs~Dg~V~vWd~~t~~~~~~---------l~~h~~~V~~l~fsp-dg~~Lasgs~ 685 (903)
.|.-+++.+-|.|+.+ +|||++ ..+|||.+...+.... -..+..++++..|+. +-++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 5889999999999763 666654 4799999874222111 124678899999986 4568899999
Q ss_pred CCcEEEEeCCCC--CceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeE-Eeec-----CceeEEEe
Q 002591 686 DKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKG-----GTAQMRFQ 757 (903)
Q Consensus 686 Dg~I~IWDl~~~--~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~-~~~~-----~~~~v~~s 757 (903)
|-+..|||++++ +.....+..|...|+.|+|...+..+|++++.||.||+||++..+... .++. ....++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 999999999983 334667788999999999999889999999999999999999876433 3333 23457777
Q ss_pred cCCCEEEE-EEc-CCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCC---cceEEE
Q 002591 758 PHLGRYLA-AAA-ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSE---GECVHE 829 (903)
Q Consensus 758 p~~~~ll~-~s~-dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~-~lasgs~d-~I~iwdl~s~~~---~~~i~~ 829 (903)
+.+..+++ ... ...|.|.|++.. .++..+.+|...|+.|+|.|... .|+++++| .+.|||+..... ...+..
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 77755444 333 458999999986 68889999999999999999654 89999999 899999976432 112222
Q ss_pred eecCCCceEEEEEeCCCCEEEEEECCCeEEEE
Q 002591 830 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 861 (903)
Q Consensus 830 ~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vw 861 (903)
+. .+..|..+.|++...--++++.++++.+.
T Consensus 332 y~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 332 YT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 22 36789999999755444445555555543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.8e-16 Score=158.16 Aligned_cols=231 Identities=19% Similarity=0.310 Sum_probs=180.6
Q ss_pred CCCeEEEEEc-------CCCCEEEEEeCCCcEEEEECCCCceeEEecc--CCC---CeEEEEECCCCCEEEEEeCCCcEE
Q 002591 623 TSKVICCHFS-------SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSS---LITDVRFSPSMPRLATSSFDKTVR 690 (903)
Q Consensus 623 ~~~V~~l~fs-------pdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~--h~~---~V~~l~fspdg~~Lasgs~Dg~I~ 690 (903)
...|+..+|- |+..++|+.+.|.-|++||.-+|+....++. |-+ ...+++|+|||..|++|- ...|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence 3467777775 5777999999999999999999998888774 333 456899999999998775 67799
Q ss_pred EEeCCCCCceeEE--ec-----cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceeEEEecCC
Q 002591 691 VWDADNPGYSLRT--FM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHL 760 (903)
Q Consensus 691 IWDl~~~~~~~~~--~~-----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~---~~~~~~v~~sp~~ 760 (903)
|||+..++..... .. +..+.|.|++|+|....+++.++....+-||.-.....+..+ .++++.++|.++|
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc
Confidence 9999655543221 11 236789999999998888889999999989888777766554 4679999999999
Q ss_pred CEEEEEEc-CCeEEEEECCCC-eEEEEecCCCC-CeEE--EEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC
Q 002591 761 GRYLAAAA-ENVVSILDAETQ-ACRLSLQGHTK-PIDS--VCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 834 (903)
Q Consensus 761 ~~ll~~s~-dg~I~i~D~~t~-~~~~~l~~h~~-~V~s--l~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~ 834 (903)
++|++++. +..|..||++.. .++..+..|.. .-.. ....|++++|++|+.+ .|++||+.... ..+..+..+.
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~s 340 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNYS 340 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--Cccccccccc
Confidence 99999987 789999999975 56677777765 2223 3456889999999888 99999998732 3455666677
Q ss_pred CceEEEEEeCCCCEEEEEECCC
Q 002591 835 NKFHSCVFHPTYPSLLVIGCYQ 856 (903)
Q Consensus 835 ~~i~si~~sp~g~~l~t~s~dg 856 (903)
..++.++++|--..+++++...
T Consensus 341 d~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 341 DTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred ccccceecCcccceeeeccCce
Confidence 8899999999977777766543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-16 Score=164.32 Aligned_cols=201 Identities=19% Similarity=0.301 Sum_probs=160.0
Q ss_pred eeEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-------ceeEEeccCCCCeEEEEECCCC-CEEEEEeCC
Q 002591 616 ANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSFD 686 (903)
Q Consensus 616 ~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~V~vWd~~t~-------~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~D 686 (903)
+-.+.+|+++|..++|+|- ...||+|+.|.+|.||++... +.+..+.+|...|--|.|+|.. +.|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 3457899999999999994 568999999999999997632 4577889999999999999975 478999999
Q ss_pred CcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC----ceeEEEecCCCE
Q 002591 687 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGR 762 (903)
Q Consensus 687 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~----~~~v~~sp~~~~ 762 (903)
.+|.||++.+ ++.+.++. |.+.|++++|+.+|. ++++.+.|..|||||.++++.+..-..+ ...+.|..++.
T Consensus 154 n~v~iWnv~t-geali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 154 NTVSIWNVGT-GEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK- 229 (472)
T ss_pred ceEEEEeccC-CceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence 9999999998 66666666 999999999999977 6679999999999999999988765432 33466777777
Q ss_pred EEEEEc----CCeEEEEECCCCeE---EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC
Q 002591 763 YLAAAA----ENVVSILDAETQAC---RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 821 (903)
Q Consensus 763 ll~~s~----dg~I~i~D~~t~~~---~~~l~~h~~~V~sl~~spdg~~lasgs~d--~I~iwdl~s~ 821 (903)
+++++. +..+.+||....+. ..++. ....|.---|++|..+|+.++.+ .||.|.+...
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 555443 67899998776532 22333 34556666788988877776655 8999999765
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-15 Score=148.19 Aligned_cols=267 Identities=16% Similarity=0.225 Sum_probs=192.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCC----------CceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDT----------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 694 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs~Dg~V~vWd~~t----------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 694 (903)
.|.+-+|+|.+++|++|..+|.|.++.+++ ...+..+.+|.++|..++|. ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 577778999999999999999999998753 13345567999999999998 34677766 699999987
Q ss_pred CCCCcee-----E--EeccC-----CCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCcee---EEEecC
Q 002591 695 DNPGYSL-----R--TFMGH-----SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPH 759 (903)
Q Consensus 695 ~~~~~~~-----~--~~~~h-----~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~---v~~sp~ 759 (903)
+...+.. . ...-| --.|+++...|..+.+|. ++.|+.++.||+++|+..++++++... +.....
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 6422210 0 01112 235888999998887774 447999999999999999999987654 444456
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEecCCC----------CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEE
Q 002591 760 LGRYLAAAAENVVSILDAETQACRLSLQGHT----------KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHE 829 (903)
Q Consensus 760 ~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~----------~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~ 829 (903)
.+.+++++.||++++||.++++++..+...+ .+|-+++. +..++++|+.-.+.+|.+++.+. .++..
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~-t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSES-TCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCc-eEEEe
Confidence 6899999999999999999999988775421 23555554 46788888777999999998632 33333
Q ss_pred eecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEEEEccCCCCEEEEEEecC-CCEEEEEecCCcEEEcC
Q 002591 830 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 903 (903)
Q Consensus 830 ~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~spd-g~~LaSgs~DG~I~IWd 903 (903)
+ ...+..+.|..+ .+++++..+.|.-|.+..--...+.......++..|+.. -++|-.++..+.+.|++
T Consensus 245 i---pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 245 I---PARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred c---ccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 3 456777788654 577888788999998865443444444444555555432 34566677777777753
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-15 Score=173.95 Aligned_cols=256 Identities=18% Similarity=0.287 Sum_probs=184.3
Q ss_pred CcEEEEECCCC-ceeEEeccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCce-----eEEeccCCCceEEEEec
Q 002591 645 KKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYS-----LRTFMGHSASVMSLDFH 717 (903)
Q Consensus 645 g~V~vWd~~t~-~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~~~~~~-----~~~~~~h~~~V~sl~fs 717 (903)
+.+.||+++.. .....+ .....|+|++|+|... +||.|+.+|.|.+||++..... ......|..+|+.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999865 333333 4567799999999654 6778888999999999875442 12334689999999997
Q ss_pred CCCCe-EEEEEeCCCcEEEEEcCCCeee------EEe---------ecCceeEEEecCC-CEEEEEEcCCeEEEEECCC-
Q 002591 718 PNKDD-LICSCDGDGEIRYWSINNGSCT------RVF---------KGGTAQMRFQPHL-GRYLAAAAENVVSILDAET- 779 (903)
Q Consensus 718 p~~~~-ll~sgs~Dg~I~iwDi~t~~~~------~~~---------~~~~~~v~~sp~~-~~ll~~s~dg~I~i~D~~t- 779 (903)
.+... =|++++.||.|+.|+++.-... ... ...+..+.|.+.. ..|++|+.+|.|..-+...
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 65433 2348888999999998754321 111 1245667787766 5788888899888743322
Q ss_pred --C-----eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE-EE
Q 002591 780 --Q-----ACRLSLQGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS-LL 850 (903)
Q Consensus 780 --~-----~~~~~l~~h~~~V~sl~~spdg~-~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~-l~ 850 (903)
. +....+..|.++|+++.++|-+. +|.++++.+|+||..... ...+..+..+...+++++|+|.... |+
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~--~~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI--ASPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC--CCcchhhhhccceeeeeEEcCcCceEEE
Confidence 2 12334566899999999999776 455555339999998632 2455556666677999999998765 45
Q ss_pred EEECCCeEEEEECCCCcEE---EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 851 VIGCYQSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 851 t~s~dg~I~vwdl~~~~~~---~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
++..||.|.|||+...... ....+....+.+.|+++|++|+.|...|.|+||+
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 5566899999999765433 4444566777888888999999999999999985
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=150.80 Aligned_cols=227 Identities=19% Similarity=0.267 Sum_probs=171.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEeCCC---------CCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEE
Q 002591 667 LITDVRFSPSMPRLATSSFDKTVRVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 737 (903)
Q Consensus 667 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~---------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwD 737 (903)
.|.+-+|+|.+++|++|+.+|.|.++.+.+ +...+..+.+|.++|+.++|+. .+|++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEee
Confidence 466778999999999999999999998863 2234566689999999999983 2555776 69999998
Q ss_pred cCCCee----eEEe------------ecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC
Q 002591 738 INNGSC----TRVF------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 801 (903)
Q Consensus 738 i~t~~~----~~~~------------~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd 801 (903)
.+.... .+.+ -..++.+-..|..+.++.++.|+.++.||+++|+..+++++|++.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 764321 1111 124677888999999999999999999999999999999999999999998665
Q ss_pred CCEEEEEeCC-eEEEEECCCCCCcceEEEeec-------CCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEEEEcc
Q 002591 802 GELLASVSED-SVRVWTVGSGSEGECVHELSC-------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 873 (903)
Q Consensus 802 g~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~-------~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~~ 873 (903)
..-|++|++| ++||||+++.+....+...+. ....|.+++.+. .+++ |+....+.+|+++..+...+..
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e--dWlv-CGgGp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--DWLV-CGGGPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--ceEE-ecCCCceeEEeccCCCceEEEe
Confidence 6678889998 999999999855444433322 122355555543 3444 4555689999999999988777
Q ss_pred CCCCEEEEEEecCCCEEEEEecCCcEEEc
Q 002591 874 HEGLIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 874 h~~~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
-...|..+.|..| .+++++..+.|.-|
T Consensus 245 ipa~v~~v~F~~d--~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVDD--CVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeecc--eEEEeccccceeee
Confidence 8888999998654 56666655555444
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-14 Score=152.06 Aligned_cols=231 Identities=17% Similarity=0.290 Sum_probs=173.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCC--CcEEEEeCCCCCce
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYS 700 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D--g~I~IWDl~~~~~~ 700 (903)
...|..+.|..|...|..|+.|| .++|..+..............|..+-|+.. ++|..+.+ ..+++++++. +..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk-~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKK-KTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEccc-Cce
Confidence 45678888999999999999987 688887765543333334445666667654 66555554 4589999986 333
Q ss_pred eEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC----ceeEEEecCC--CEEEEEEc--CCeE
Q 002591 701 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHL--GRYLAAAA--ENVV 772 (903)
Q Consensus 701 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~----~~~v~~sp~~--~~ll~~s~--dg~I 772 (903)
+..+. ....|.++.++.+ +++ ++-. ..|+|||+++.+.++++..- ...++++++. .+++.-+. .|.|
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLv-V~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLV-VCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEE-EEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 43333 4567999999754 344 5554 44999999999988877532 2234555554 46655433 5899
Q ss_pred EEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecC--CCceEEEEEeCCCCE
Q 002591 773 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPS 848 (903)
Q Consensus 773 ~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d--~I~iwdl~s~~~~~~i~~~~~~--~~~i~si~~sp~g~~ 848 (903)
.+||+.+-+.+..+..|++.+.+++|+++|.+||++++. -||||.+.++ ..+.++... ...|.+++|++++.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence 999999999999999999999999999999999999998 6899999887 444444432 345889999999999
Q ss_pred EEEEECCCeEEEEECCC
Q 002591 849 LLVIGCYQSLELWNMSE 865 (903)
Q Consensus 849 l~t~s~dg~I~vwdl~~ 865 (903)
|++.+..++|+||.+..
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998864
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-15 Score=170.32 Aligned_cols=279 Identities=17% Similarity=0.290 Sum_probs=209.8
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----CCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 002591 621 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 696 (903)
Q Consensus 621 ~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~----t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~ 696 (903)
.|.-.++|.++||+++++|+|..||.|.||.-- .......++-|...|++++|+++|.+|++|+..|-+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 477779999999999999999999999999632 2234566778999999999999999999999999999999998
Q ss_pred CCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--------------cCceeEEEecCCCE
Q 002591 697 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------------GGTAQMRFQPHLGR 762 (903)
Q Consensus 697 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~--------------~~~~~v~~sp~~~~ 762 (903)
++ ...+..-.+.|..+.++|+++.+. .+..|..|.+....+.....++. +-...++++|.-+.
T Consensus 283 ~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 283 GK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred CC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 44 455666788999999999987555 66669999998875544333222 22455788998889
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEecC-----C------CCCeEEEEEcCCCCEEEEEeC----------C-eEEEEECCC
Q 002591 763 YLAAAAENVVSILDAETQACRLSLQG-----H------TKPIDSVCWDPSGELLASVSE----------D-SVRVWTVGS 820 (903)
Q Consensus 763 ll~~s~dg~I~i~D~~t~~~~~~l~~-----h------~~~V~sl~~spdg~~lasgs~----------d-~I~iwdl~s 820 (903)
++..+..+.|.+||+-+.+.++.+.. + ...++.++.+-.|.+++|... . .+++|-...
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 99999999999999998876665531 1 234677788888999988741 1 589998765
Q ss_pred CCCcceE--EEeecCCCceEEEEEe-CCCC-EEEEEECCCeEEEEECCCCc----------EE-EEccCCCCEEEEEEec
Q 002591 821 GSEGECV--HELSCNGNKFHSCVFH-PTYP-SLLVIGCYQSLELWNMSENK----------TM-TLTAHEGLIAALAVST 885 (903)
Q Consensus 821 ~~~~~~i--~~~~~~~~~i~si~~s-p~g~-~l~t~s~dg~I~vwdl~~~~----------~~-~~~~h~~~V~sl~~sp 885 (903)
......+ .....|+..+...++. +... .+++++.||.++||-+...+ +. .-.-|..++++++|+.
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 5433322 2334566665555544 3333 79999999999999883322 11 1123788999999999
Q ss_pred CCCEEEEEecCCcEEEcC
Q 002591 886 ETGYVASASHDKFVKLWK 903 (903)
Q Consensus 886 dg~~LaSgs~DG~I~IWd 903 (903)
||..| +++.|++|.|||
T Consensus 520 dGsll-a~s~~~~Itiwd 536 (792)
T KOG1963|consen 520 DGSLL-AVSFDDTITIWD 536 (792)
T ss_pred CCcEE-EEecCCEEEEec
Confidence 99655 556789999997
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-15 Score=174.09 Aligned_cols=244 Identities=19% Similarity=0.279 Sum_probs=185.3
Q ss_pred CCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCce--eEE----eccCCCCeEEEEECCCCC--EEEEEeCCCcEEEE
Q 002591 622 STSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKS--KTN----LEEHSSLITDVRFSPSMP--RLATSSFDKTVRVW 692 (903)
Q Consensus 622 H~~~V~~l~fspd-g~~Latgs~Dg~V~vWd~~t~~~--~~~----l~~h~~~V~~l~fspdg~--~Lasgs~Dg~I~IW 692 (903)
-...|+|++|+|. ..+||.|+++|.|.+||+..+.. ... ...|..+|+.+.|..+.. -|++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 4568999999994 56888899999999999986554 222 236899999999976544 49999999999999
Q ss_pred eCCCCCceeE-----Eec------cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCee--------e---EEeecC
Q 002591 693 DADNPGYSLR-----TFM------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC--------T---RVFKGG 750 (903)
Q Consensus 693 Dl~~~~~~~~-----~~~------~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~--------~---~~~~~~ 750 (903)
+++.-..+.. ... .-...+++++|.+...+.++.|+++|.|..-+....+. . ..+.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8875222111 111 22346899999999888888999999998743322211 1 112345
Q ss_pred ceeEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceE
Q 002591 751 TAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECV 827 (903)
Q Consensus 751 ~~~v~~sp~~~~ll~~s~dg~I~i~D~~-t~~~~~~l~~h~~~V~sl~~spdg~-~lasgs~d-~I~iwdl~s~~~~~~i 827 (903)
+..+.++|-...++.++.|.+|+||... ...++..+..+...|++++|+|... +|+++..+ .|.|||+....... +
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P-v 479 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP-V 479 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC-c
Confidence 7778899999888888889999999988 7788888888888899999999776 66667666 99999998754433 3
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 002591 828 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 866 (903)
Q Consensus 828 ~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~ 866 (903)
.....+....+.+.|++.|+.|++|...|.|++|++...
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 333333566777788889999999999999999999643
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=172.35 Aligned_cols=237 Identities=20% Similarity=0.285 Sum_probs=167.5
Q ss_pred eeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCCeEEEEECCC--CCEEEEEeCCCcE
Q 002591 613 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPS--MPRLATSSFDKTV 689 (903)
Q Consensus 613 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~-~h~~~V~~l~fspd--g~~Lasgs~Dg~I 689 (903)
+.....+.||++.|+|++|+.+|.+|++|+.|-.|.|||.-..+.+..+. +|...|.++.|-|. .+.+++|..|..|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 34556789999999999999999999999999999999988777777764 89999999999884 5689999999999
Q ss_pred EEEeCCC---------CCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeee-EEe------------
Q 002591 690 RVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVF------------ 747 (903)
Q Consensus 690 ~IWDl~~---------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~-~~~------------ 747 (903)
++||+.. .....+.+..|...|..|+-.|++.+.+.++++||+|+-+|++..... ...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999984 234566777899999999999999899999999999999999874311 111
Q ss_pred ecCceeEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEecC-----CCCCeEEEE-EcCCCCEEEEEeCCeEEEEECCC
Q 002591 748 KGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQG-----HTKPIDSVC-WDPSGELLASVSEDSVRVWTVGS 820 (903)
Q Consensus 748 ~~~~~~v~~sp~~~-~ll~~s~dg~I~i~D~~t~~~~~~l~~-----h~~~V~sl~-~spdg~~lasgs~d~I~iwdl~s 820 (903)
.....++.++|... +|++|+.|-..++||.+...+-..-.+ ......|+. |+|.+- ...+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~--------- 266 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQ--------- 266 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----cCcc---------
Confidence 01345666777664 455566677788888543211110000 001111111 122110 0000
Q ss_pred CCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE
Q 002591 821 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 869 (903)
Q Consensus 821 ~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~ 869 (903)
+ . +......++-+.|+|+|..|++.-....|++||+..++..
T Consensus 267 g---n----~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 267 G---N----LDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred c---c----cccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 0 0 0000112556789999999999888889999999988754
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=165.72 Aligned_cols=259 Identities=17% Similarity=0.279 Sum_probs=191.6
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEE-CC-------CCCEEEEEeCCCcEEEE
Q 002591 621 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-SP-------SMPRLATSSFDKTVRVW 692 (903)
Q Consensus 621 ~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~f-sp-------dg~~Lasgs~Dg~I~IW 692 (903)
.|...|.||.|+.+...+.+++ |..+.+|...+......+.-..+.|....+ -+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4777788999998877666665 555555543333333333222222222221 11 23478888999999998
Q ss_pred eCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCee---eEEeecCceeEEEecCCCEEEEEEcC
Q 002591 693 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKGGTAQMRFQPHLGRYLAAAAE 769 (903)
Q Consensus 693 Dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~---~~~~~~~~~~v~~sp~~~~ll~~s~d 769 (903)
+-. ++.-+.+..|.+.|.+-.|+|+|.-++ ++++||.|++|.-. |.. +..+...+.+++|.|+.+.++.+. .
T Consensus 91 ~k~--~rVE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g 165 (737)
T KOG1524|consen 91 NKS--ARVERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-G 165 (737)
T ss_pred ccc--chhhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEec-C
Confidence 754 566678889999999999999998776 99999999999843 432 233456789999999988877654 4
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 002591 770 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 848 (903)
Q Consensus 770 g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~ 848 (903)
+.+.|--+.-...+...+.|.+-|.++.|++..+++++|++| ..+|||--. ..+..-..|+.+|++++|.|+ ..
T Consensus 166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd-~~ 240 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE-KD 240 (737)
T ss_pred CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc-cc
Confidence 567777777777788889999999999999999999999999 999999643 566667778999999999999 44
Q ss_pred EEEEECCCeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecCCcEEE
Q 002591 849 LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 901 (903)
Q Consensus 849 l~t~s~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~I 901 (903)
+++++ .+++++= ....+.|..++|++||..++.|+..|.|.+
T Consensus 241 ~~v~S-~nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 241 YLLWS-YNTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeee-eeeeeec----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 44443 3444422 234577999999999999999999887643
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=158.65 Aligned_cols=252 Identities=16% Similarity=0.199 Sum_probs=184.8
Q ss_pred ceeeeeEeecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEE--eccCC-CCeEEEEECCCCCEEEEEeC-
Q 002591 612 SFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHS-SLITDVRFSPSMPRLATSSF- 685 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fsp--dg~~Latgs~Dg~V~vWd~~t~~~~~~--l~~h~-~~V~~l~fspdg~~Lasgs~- 685 (903)
+.+.+..|++|...++.++|.. ....+.+|+.||+|++||+++...... +..+. .+..|++..-.+..+++|..
T Consensus 59 tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~ 138 (376)
T KOG1188|consen 59 TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTEL 138 (376)
T ss_pred chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccc
Confidence 5567778889999999999977 456899999999999999986554443 44555 56778887777888888854
Q ss_pred ---CCcEEEEeCCCCCceeEE-eccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe----eeEEee--cCceeEE
Q 002591 686 ---DKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS----CTRVFK--GGTAQMR 755 (903)
Q Consensus 686 ---Dg~I~IWDl~~~~~~~~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~----~~~~~~--~~~~~v~ 755 (903)
|-.|.+||++.....++. ...|.+.|++|+|+|...++|++|+.||.|.|||++... ++.++. ..+..+.
T Consensus 139 ~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~ig 218 (376)
T KOG1188|consen 139 TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIG 218 (376)
T ss_pred ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeee
Confidence 678999999986664554 457999999999999999999999999999999998653 233333 2466778
Q ss_pred EecCC-CEEEEEEcCCeEEEEECCCCeEEEEecCCC------------CCeEEEEEcC-CCCEEEEEeCC--eEEEEECC
Q 002591 756 FQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHT------------KPIDSVCWDP-SGELLASVSED--SVRVWTVG 819 (903)
Q Consensus 756 ~sp~~-~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~------------~~V~sl~~sp-dg~~lasgs~d--~I~iwdl~ 819 (903)
|..++ +++.+.+...+..+|+++.+.+...+.... ..+... .+| +..+++.++.+ ...++-+.
T Consensus 219 w~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 219 WLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred eecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEee
Confidence 87766 678888999999999999987665544221 011111 223 34455555443 55555443
Q ss_pred ---CCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002591 820 ---SGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 820 ---s~~~~~~i~~~~~-~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~ 864 (903)
++.....+..+.+ |...|.++.|.-.+..+++|+.||.+.+|...
T Consensus 298 ~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 298 DTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 3433444455554 56678888999899999999999999999863
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.2e-15 Score=149.20 Aligned_cols=282 Identities=17% Similarity=0.263 Sum_probs=203.6
Q ss_pred eeeeEeecCCCCeEEEEEcC--C-CCEEEEEeC----CCcEEEEECC--CCceeEEe-ccCCCCeEEEEECCCCC-----
Q 002591 614 KEANSVRASTSKVICCHFSS--D-GKLLATGGH----DKKAVLWHTD--TLKSKTNL-EEHSSLITDVRFSPSMP----- 678 (903)
Q Consensus 614 ~~~~~l~~H~~~V~~l~fsp--d-g~~Latgs~----Dg~V~vWd~~--t~~~~~~l-~~h~~~V~~l~fspdg~----- 678 (903)
+++..+..+ -.++++.|+. + ..+||.|+. .++|.|..++ +++.+..- ..|..+++.+.|.|+..
T Consensus 36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcc
Confidence 445555543 4688999983 3 348898873 4667776554 44433322 36899999999999864
Q ss_pred EEEEEeCCCcEEEEeCCCCCcee--------EEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCee--eE---
Q 002591 679 RLATSSFDKTVRVWDADNPGYSL--------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC--TR--- 745 (903)
Q Consensus 679 ~Lasgs~Dg~I~IWDl~~~~~~~--------~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~--~~--- 745 (903)
+||+++ ..+|+|.+..+...+ ..-..+..+++++.|+.-..++|.+++-|-++.|||++++.. ++
T Consensus 115 lLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 115 LLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred hhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence 455543 459999987422111 112346789999999998888999999999999999998732 22
Q ss_pred -EeecCceeEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEe---cCCCCCeEEEEEcCC-CCEEEEEeCC--eEEEEE
Q 002591 746 -VFKGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWDPS-GELLASVSED--SVRVWT 817 (903)
Q Consensus 746 -~~~~~~~~v~~sp~~-~~ll~~s~dg~I~i~D~~t~~~~~~l---~~h~~~V~sl~~spd-g~~lasgs~d--~I~iwd 817 (903)
.+...+..++|...+ +.|++++.||.|++||++..+--..+ .....+...++|++. -+|+|+...| .|.|.|
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 234567889999866 56778889999999999986433222 223567888999984 4589988888 899999
Q ss_pred CCCCCCcceEEEeecCCCceEEEEEeCC-CCEEEEEECCCeEEEEECCCCcE------EEEccCCCCEEEEEEec-CCCE
Q 002591 818 VGSGSEGECVHELSCNGNKFHSCVFHPT-YPSLLVIGCYQSLELWNMSENKT------MTLTAHEGLIAALAVST-ETGY 889 (903)
Q Consensus 818 l~s~~~~~~i~~~~~~~~~i~si~~sp~-g~~l~t~s~dg~I~vwdl~~~~~------~~~~~h~~~V~sl~~sp-dg~~ 889 (903)
++.. ...+..+..|...|+.++|.|. ..+|++++.|..+.+||+..--. +....-.+.|+.+.|++ ...+
T Consensus 273 iR~P--~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dw 350 (364)
T KOG0290|consen 273 IRVP--CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDW 350 (364)
T ss_pred ecCC--CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCE
Confidence 9865 3678889999999999999996 46788889999999999975322 22234678899999986 4556
Q ss_pred EEEEecCCcEEE
Q 002591 890 VASASHDKFVKL 901 (903)
Q Consensus 890 LaSgs~DG~I~I 901 (903)
|+.+. ++++.|
T Consensus 351 iai~~-~kklei 361 (364)
T KOG0290|consen 351 IAICF-GKKLEI 361 (364)
T ss_pred EEEEe-cCeeeE
Confidence 76664 444443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-15 Score=151.35 Aligned_cols=224 Identities=16% Similarity=0.265 Sum_probs=173.5
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 002591 618 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 694 (903)
Q Consensus 618 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 694 (903)
.++.-..+|+|.+|++|+..+|++.....|.||.... .+..+++..|...|++|+|+|..+.|++|+.|..-+||..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 3444567999999999999999999999999998763 5678899999999999999999999999999999999998
Q ss_pred CCCC--ceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe-------eeEEeecCceeEEEecCCCEEEE
Q 002591 695 DNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-------CTRVFKGGTAQMRFQPHLGRYLA 765 (903)
Q Consensus 695 ~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~-------~~~~~~~~~~~v~~sp~~~~ll~ 765 (903)
..++ +....+..+...++++.|+|.++ .|++|+....|.||-++... ..+.++..+.++.|+|++-.+++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 5433 34456667899999999999965 66799989999999887553 22334566789999999999999
Q ss_pred EEcCCeEEEEEC-----CC-------------CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 002591 766 AAAENVVSILDA-----ET-------------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 826 (903)
Q Consensus 766 ~s~dg~I~i~D~-----~t-------------~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~ 826 (903)
|+.|+.+++|.. ++ |..+.++....+.|..+.|+|+|..|+-.+.| .+.+-|.....+ .
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~ 241 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--R 241 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--h
Confidence 999999998853 21 22333444456789999999999999999999 888888765431 1
Q ss_pred EEEeecCCCceEEEEEeC
Q 002591 827 VHELSCNGNKFHSCVFHP 844 (903)
Q Consensus 827 i~~~~~~~~~i~si~~sp 844 (903)
+.......-+..++.|-.
T Consensus 242 v~~~~~~~lP~ls~~~is 259 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWIS 259 (361)
T ss_pred ccchhhccCCceeeEeec
Confidence 222222234555555543
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-15 Score=150.76 Aligned_cols=207 Identities=24% Similarity=0.409 Sum_probs=160.0
Q ss_pred cceeeeeEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEec-----cCCCCeEEEEECC--CCCEEE
Q 002591 611 FSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLE-----EHSSLITDVRFSP--SMPRLA 681 (903)
Q Consensus 611 ~~~~~~~~l~-~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~-~~~l~-----~h~~~V~~l~fsp--dg~~La 681 (903)
.+++.+..+. .+-+.|.||.|.|++..||+-. |..|.+|+++.... +..+. +|....++-+|+| ++..++
T Consensus 110 ~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 110 STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE
Confidence 3566777776 6777999999999999888875 88999999986655 33332 3567788999988 676777
Q ss_pred EEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeecC---ceeEEEe
Q 002591 682 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGG---TAQMRFQ 757 (903)
Q Consensus 682 sgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~-~~~~~~~~---~~~v~~s 757 (903)
+.+ |+++..||+++..+....-..|...|..+.|+|+..++|++|++||.|+|||.+.-+ .+..+.++ +-+++|+
T Consensus 189 tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn 267 (370)
T KOG1007|consen 189 TTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN 267 (370)
T ss_pred EeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec
Confidence 765 899999999986655556667889999999999999999999999999999998755 45555554 4578898
Q ss_pred cCCC-EEEEEEcCCeEEEEECCCC-----------------------------eEEEEecCCCCCeEEEEEcCCCC-EEE
Q 002591 758 PHLG-RYLAAAAENVVSILDAETQ-----------------------------ACRLSLQGHTKPIDSVCWDPSGE-LLA 806 (903)
Q Consensus 758 p~~~-~ll~~s~dg~I~i~D~~t~-----------------------------~~~~~l~~h~~~V~sl~~spdg~-~la 806 (903)
|... .++++++|..|.+|....- ..+.++..|++.|.+++|+.-.. +||
T Consensus 268 ~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFA 347 (370)
T KOG1007|consen 268 PEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFA 347 (370)
T ss_pred CccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEE
Confidence 8764 5667778888888853210 12335677999999999998666 677
Q ss_pred EEeCC-eEEEEECC
Q 002591 807 SVSED-SVRVWTVG 819 (903)
Q Consensus 807 sgs~d-~I~iwdl~ 819 (903)
+-+.| .+.|=.+.
T Consensus 348 SLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 348 SLSYDGRVIISSVP 361 (370)
T ss_pred EeccCceEEeecCC
Confidence 78888 77766554
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-16 Score=168.48 Aligned_cols=262 Identities=18% Similarity=0.275 Sum_probs=210.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEE
Q 002591 624 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 703 (903)
Q Consensus 624 ~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~ 703 (903)
-.-+.+.|+.+|++|+.|+..|.|..+|+.+++....+.. ...|.++.|-.+..+||++- ...++|||-. +..+..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~--GtElHC 205 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN--GTELHC 205 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCC--CcEEee
Confidence 3567899999999999999999999999999988888754 45699999998888887775 5679999875 667788
Q ss_pred eccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceeEEEecCCCEEEEEEcCCeEEEEECCCC
Q 002591 704 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ 780 (903)
Q Consensus 704 ~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~---~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~ 780 (903)
+..| ..|..+.|.|. .+||++++..|.++.-|+.+|+.+..+. +.+..++-+|.+..+-+|...|+|.+|.....
T Consensus 206 lk~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred hhhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 7765 45888999997 6788899999999999999999887664 45667788999999999999999999999999
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEE
Q 002591 781 ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLE 859 (903)
Q Consensus 781 ~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~ 859 (903)
+++..+..|.++|.+|++.++|.|++|.+.| .|+|||+++.... ..+.. ......++++..| +++++....|.
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql---~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~ 357 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL---HTYRT-PHPASNLSLSQKG--LLALSYGDHVQ 357 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc---ceeec-CCCcccccccccc--ceeeecCCeee
Confidence 9999999999999999999999999999999 9999999987432 33222 4456667777665 66667777899
Q ss_pred EEE-CCCC---cEEEEc--cCCCCEEEEEEecCCCEEEEEecCC
Q 002591 860 LWN-MSEN---KTMTLT--AHEGLIAALAVSTETGYVASASHDK 897 (903)
Q Consensus 860 vwd-l~~~---~~~~~~--~h~~~V~sl~~spdg~~LaSgs~DG 897 (903)
||. .-.+ ....+. ...+.|.++.|+|-...|..|-..|
T Consensus 358 iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 358 IWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred eehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 994 3321 111222 2345899999999777776665544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.1e-15 Score=163.01 Aligned_cols=237 Identities=15% Similarity=0.235 Sum_probs=176.1
Q ss_pred eeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 002591 616 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 694 (903)
Q Consensus 616 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 694 (903)
..++++|.+.|+|++|+.||+++|+|+.|+.|.||.-.- .-.++ .|.+.|.|+.|+|-...|++++... .-+|..
T Consensus 46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~ 121 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSP 121 (1081)
T ss_pred ccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhh-ccccCh
Confidence 456889999999999999999999999999999997542 22222 6999999999999999999998643 678987
Q ss_pred CCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-----cCceeEEEecCCC-----EEE
Q 002591 695 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLG-----RYL 764 (903)
Q Consensus 695 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~-----~~~~~v~~sp~~~-----~ll 764 (903)
+. +.+...+ ....|.+.+|..||.+ ++.|-.||+|.|-+....+.++.-. .++..++|+|..+ .+.
T Consensus 122 ~q--K~V~K~k-ss~R~~~CsWtnDGqy-lalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 122 EQ--KSVSKHK-SSSRIICCSWTNDGQY-LALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred hh--hhHHhhh-hheeEEEeeecCCCcE-EEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 65 2222222 3457888999999774 5588899999998765444443322 3567789988753 455
Q ss_pred EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEe
Q 002591 765 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 843 (903)
Q Consensus 765 ~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~s 843 (903)
+.....++.+|.+. |+.+..-+.-.-.-.|+.+.++|.|+..|+.| .+.+|.-. + ..+.++...+..|.++..+
T Consensus 198 V~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G---vrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G---VRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-C---eEEeeccccceeEEEEEEc
Confidence 55556667766654 33333222233345688999999999998888 78888643 2 4455555568899999999
Q ss_pred CCCCEEEEEECCCeEEEEECCC
Q 002591 844 PTYPSLLVIGCYQSLELWNMSE 865 (903)
Q Consensus 844 p~g~~l~t~s~dg~I~vwdl~~ 865 (903)
|++.++++|+.||+|..|++-.
T Consensus 273 PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred cCCceEEEEEccCeeehhhhHH
Confidence 9999999999999999998753
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.1e-15 Score=168.80 Aligned_cols=230 Identities=17% Similarity=0.182 Sum_probs=162.6
Q ss_pred CCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCC---CcEEEEeCCCCC-ceeEEeccCCCceEEEEecCC
Q 002591 644 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPN 719 (903)
Q Consensus 644 Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~~~~-~~~~~~~~h~~~V~sl~fsp~ 719 (903)
+..|.|||.+... ...+..|...|.+++|+|||+.|++++.+ ..|++||+.++. ..+..+.+| ..+++|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999986544 56677888899999999999999988754 369999998632 223334443 446899999
Q ss_pred CCeEEEEEeCCCcEEEE--EcCCCeeeEEee--cCceeEEEecCCCEEEEEE-cCCeEEEEECC--CCeEEEEecCCCCC
Q 002591 720 KDDLICSCDGDGEIRYW--SINNGSCTRVFK--GGTAQMRFQPHLGRYLAAA-AENVVSILDAE--TQACRLSLQGHTKP 792 (903)
Q Consensus 720 ~~~ll~sgs~Dg~I~iw--Di~t~~~~~~~~--~~~~~v~~sp~~~~ll~~s-~dg~I~i~D~~--t~~~~~~l~~h~~~ 792 (903)
+..++++.+.+|.+.|| |+.++....... .......|+|++..++.++ .++...||++. .+.. ..+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC-
Confidence 99888777778876555 666665443322 2356789999999877766 46777777654 3322 222 3433
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEEC---CCCcEE
Q 002591 793 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM---SENKTM 869 (903)
Q Consensus 793 V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl---~~~~~~ 869 (903)
.++.|+|||++|+..+.+.+.+||+.++... .+ ... .....+.|+|++++|++++.++.+.+|++ ......
T Consensus 336 -~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~-~l--t~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDNVVKQDLTSGSTE-VL--SST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred -CCccCCCCCCEEEEEcCCCEEEEECCCCCeE-Ee--cCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 4578999999998887787778999876421 11 111 12356789999999999999987776664 344444
Q ss_pred EEccCCCCEEEEEEecC
Q 002591 870 TLTAHEGLIAALAVSTE 886 (903)
Q Consensus 870 ~~~~h~~~V~sl~~spd 886 (903)
.+..|.+.+..++|+|-
T Consensus 410 ~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EccCCCCCCCCcccCCC
Confidence 77788888999999984
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6e-14 Score=147.25 Aligned_cols=228 Identities=13% Similarity=0.182 Sum_probs=172.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCC--CcEEEEEcCCCe
Q 002591 665 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGS 742 (903)
Q Consensus 665 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D--g~I~iwDi~t~~ 742 (903)
...+..+.|+.+...|..|+.|| .++|..+...++.. .......|..+-|+.. |+|..+.+ ..+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-KDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc-ccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence 44677888999999999999998 78888876444222 2223445667778743 55555544 458999998877
Q ss_pred eeEE--eecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC---CCCCeEEEEEcCCCCEEEEEe-CC--eEE
Q 002591 743 CTRV--FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVS-ED--SVR 814 (903)
Q Consensus 743 ~~~~--~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~---h~~~V~sl~~spdg~~lasgs-~d--~I~ 814 (903)
.+.. |...+.++++. .++++++-.+. |+|||+++.+.++++.. +...+.++.+++.+.|++.-+ .+ .|.
T Consensus 80 ~ICe~~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 5554 44455555554 45666666555 99999999999988875 344466666666666887643 33 899
Q ss_pred EEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCC-eEEEEECCCCcEE-EEcc--CCCCEEEEEEecCCCEE
Q 002591 815 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTA--HEGLIAALAVSTETGYV 890 (903)
Q Consensus 815 iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg-~I~vwdl~~~~~~-~~~~--h~~~V~sl~~spdg~~L 890 (903)
|||+.+. ..+..+..|.+.+.+++|+++|.+|++++..| .||||.+.+|..+ .+.. -...|.+++|++++.+|
T Consensus 157 l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999776 67788889999999999999999999999999 5799999999887 4432 24568899999999999
Q ss_pred EEEecCCcEEEcC
Q 002591 891 ASASHDKFVKLWK 903 (903)
Q Consensus 891 aSgs~DG~I~IWd 903 (903)
++.|..++|+||+
T Consensus 234 ~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 234 AASSNTETVHIFK 246 (391)
T ss_pred EEecCCCeEEEEE
Confidence 9999999999986
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=160.34 Aligned_cols=230 Identities=20% Similarity=0.366 Sum_probs=162.7
Q ss_pred CCCCEEEE--EeCCCcEEEEECCC-CceeEE-ec--cCCCCeEEEEECC-CCCEEEEEeCCCcEEEEeCCCCC------c
Q 002591 633 SDGKLLAT--GGHDKKAVLWHTDT-LKSKTN-LE--EHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG------Y 699 (903)
Q Consensus 633 pdg~~Lat--gs~Dg~V~vWd~~t-~~~~~~-l~--~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~~~~------~ 699 (903)
.+.+++|+ ++..|.|-||++.. |+.--. +. .....|+++.|.| |...|++++.||.|+||.+..++ .
T Consensus 589 an~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t 668 (1012)
T KOG1445|consen 589 ANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT 668 (1012)
T ss_pred eccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC
Confidence 34555654 45678999999873 332211 11 2456799999998 56689999999999999987643 3
Q ss_pred eeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCC
Q 002591 700 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET 779 (903)
Q Consensus 700 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t 779 (903)
.-..++.|...|++|.|+|-...+|++++.|-+|++||+.+.+.
T Consensus 669 Pe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~------------------------------------ 712 (1012)
T KOG1445|consen 669 PEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL------------------------------------ 712 (1012)
T ss_pred cceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh------------------------------------
Confidence 45678899999999999998777888999898888888876653
Q ss_pred CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEECCC-
Q 002591 780 QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQ- 856 (903)
Q Consensus 780 ~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~-~~~~i~si~~sp~g~~l~t~s~dg- 856 (903)
...+.+|.+.|..++|+|+|+.+++.+.| +|++|.-++++. .+.+-++ .+..-..|.|.-+|+++++.+.|.
T Consensus 713 ---~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~--pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 713 ---YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ--PVYEGKGPVGTRGARILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred ---hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC--ccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence 23456799999999999999999999999 999999987643 2332221 123445678889999999998875
Q ss_pred ---eEEEEECCCCcE--E-EEc-cCCCCEEEEEEecCCC-EEEEEecCCcEEEcC
Q 002591 857 ---SLELWNMSENKT--M-TLT-AHEGLIAALAVSTETG-YVASASHDKFVKLWK 903 (903)
Q Consensus 857 ---~I~vwdl~~~~~--~-~~~-~h~~~V~sl~~spdg~-~LaSgs~DG~I~IWd 903 (903)
.|.+||..+-.. + +.. ...-.+.--.+++|.. +|++|-.|..|++|.
T Consensus 788 SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 788 SERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred chhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence 688888765432 1 110 1111111112344444 567777788888763
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-14 Score=149.35 Aligned_cols=242 Identities=15% Similarity=0.195 Sum_probs=189.6
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc--CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 002591 621 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 698 (903)
Q Consensus 621 ~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~ 698 (903)
.|...|.|++|....++|++|+.+++|.+.|+++.+.+..+.. ..+.|..+..+|..+.|++.+.+|.|.+||++...
T Consensus 103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred ccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 4668999999999999999999999999999999888877753 34589999999999999999999999999998633
Q ss_pred ce--eEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeee-E------Eeec---CceeEEEecCCCEEEEE
Q 002591 699 YS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-R------VFKG---GTAQMRFQPHLGRYLAA 766 (903)
Q Consensus 699 ~~--~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~-~------~~~~---~~~~v~~sp~~~~ll~~ 766 (903)
.. ...+.........+.|+|....+|++.+..+-+-+||++..... . .+.. .-..+.|++.|..|++.
T Consensus 183 ~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 183 NPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred CCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 22 23333455678889999999999999999999999999865421 1 1111 12457899999999988
Q ss_pred EcCCeEEEEECCCCeEEEEecCCC-------CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCC---------------
Q 002591 767 AAENVVSILDAETQACRLSLQGHT-------KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE--------------- 823 (903)
Q Consensus 767 s~dg~I~i~D~~t~~~~~~l~~h~-------~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~--------------- 823 (903)
-....-.+||+-+..+..--..|. ..+.+++|..|.. +++|+++ .|++|.+.....
T Consensus 263 RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~ 341 (609)
T KOG4227|consen 263 RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMP 341 (609)
T ss_pred hccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCc
Confidence 877777888888755443323332 3467788876544 8899999 999999854211
Q ss_pred -----cceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEEC
Q 002591 824 -----GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 863 (903)
Q Consensus 824 -----~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl 863 (903)
...+..+++|...+..+.|++....|++.+-.+.|+||.-
T Consensus 342 ~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 342 SEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred hhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 1244667889999999999999999999999999999964
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-13 Score=149.82 Aligned_cols=264 Identities=13% Similarity=0.128 Sum_probs=175.4
Q ss_pred EE-EEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEE
Q 002591 637 LL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 715 (903)
Q Consensus 637 ~L-atgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~ 715 (903)
++ ++-..++.|.|.|..+.+.+.++......-..+.|++|++++++++.||.|.++|+.+ .+.+.++... ....+++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~G-~~~~~i~ 84 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKVG-GNPRGIA 84 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE-S-SEEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEecC-CCcceEE
Confidence 44 4555789999999999999999987655555678999999999999999999999998 6677777643 4467899
Q ss_pred ecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC----------ceeEEEecCCCEEEEEEcC-CeEEEEECCCCeEE-
Q 002591 716 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----------TAQMRFQPHLGRYLAAAAE-NVVSILDAETQACR- 783 (903)
Q Consensus 716 fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~----------~~~v~~sp~~~~ll~~s~d-g~I~i~D~~t~~~~- 783 (903)
++++|+++++++..++.|.++|.++.+.++.+... +..+..++....++++-.| +.|.+.|....+.+
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 99999999988889999999999999988876532 3345667787877777665 88999998765433
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCc-------------------------------------
Q 002591 784 LSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEG------------------------------------- 824 (903)
Q Consensus 784 ~~l~~h~~~V~sl~~spdg~~lasgs~d--~I~iwdl~s~~~~------------------------------------- 824 (903)
..............|+|+++|++.+... .|-++|..+++..
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~ 244 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP 244 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence 2233345667889999999987776433 7777777654211
Q ss_pred ---------------ceEEEeecCCCceEEEEEeCCCCEEEEE---E-CCCeEEEEECCCCcEEEEcc--CCCCEEEEEE
Q 002591 825 ---------------ECVHELSCNGNKFHSCVFHPTYPSLLVI---G-CYQSLELWNMSENKTMTLTA--HEGLIAALAV 883 (903)
Q Consensus 825 ---------------~~i~~~~~~~~~i~si~~sp~g~~l~t~---s-~dg~I~vwdl~~~~~~~~~~--h~~~V~sl~~ 883 (903)
+.+..+...+.. .-+..||+++++++. + ..+.|.++|..+.+.+.... ....+..+.|
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef 323 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEF 323 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE
T ss_pred cccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEE
Confidence 111111111222 345669999999998 3 34799999999998763332 2235999999
Q ss_pred ecCCCEEEEEecCC--cEEEcC
Q 002591 884 STETGYVASASHDK--FVKLWK 903 (903)
Q Consensus 884 spdg~~LaSgs~DG--~I~IWd 903 (903)
+++|+++..+..++ .|.|||
T Consensus 324 ~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 324 NPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp -TTSSEEEEEEE--TTEEEEEE
T ss_pred CCCCCEEEEEEecCCCEEEEEE
Confidence 99999766655543 588886
|
... |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-14 Score=164.52 Aligned_cols=222 Identities=15% Similarity=0.192 Sum_probs=157.9
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCce--eEEeccCCCCeEEEEECCCCCEEEEEe-CCCcEE
Q 002591 617 NSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVR 690 (903)
Q Consensus 617 ~~l~~H~~~V~~l~fspdg~~Latgs~D---g~V~vWd~~t~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~ 690 (903)
..+..|...|.+.+|+|||+.||.++.+ ..|++||+.+++. +..+.+| ..+++|+|||+.|++++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 4566788899999999999999988754 3699999987753 3333333 45789999999888765 688766
Q ss_pred EEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeecCceeEEEecCCCEEEEEEcC
Q 002591 691 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGGTAQMRFQPHLGRYLAAAAE 769 (903)
Q Consensus 691 IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~-~~~~~~~~~~~v~~sp~~~~ll~~s~d 769 (903)
||.++..+.....+..+...+.+..|+|++..+++++..+|.+.||++.... ....+........|+|+++.+++++.+
T Consensus 274 Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~~ 353 (429)
T PRK01742 274 IYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMINGD 353 (429)
T ss_pred EEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcCC
Confidence 6644322334566677777888999999999888777778888888875422 222222211456799999998888775
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 002591 770 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 845 (903)
Q Consensus 770 g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~ 845 (903)
+ +.+||+.+++.......+ ...++.|+|+|++|++++.+ .+.+|++... ....+..+..+...+..++|+|-
T Consensus 354 ~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 354 N-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred C-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCceEEccCCCCCCCCcccCCC
Confidence 4 566999988765433322 34577899999999988877 6777765321 12566667677777888899885
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-13 Score=144.45 Aligned_cols=276 Identities=15% Similarity=0.250 Sum_probs=188.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc-CCCCeEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCce
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYS 700 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~-h~~~V~~l~fspdg-~~Lasgs~Dg~I~IWDl~~~~~~ 700 (903)
+..+..++|++.-..+|++..|..|++||-.. ++...++. ....|+|++|-|.+ +.|+.|+..| |+||..+.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34678899999777889999999999999765 44555543 34679999999975 4677777655 999987643221
Q ss_pred -------------eEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceeEEEecCCCEEE
Q 002591 701 -------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYL 764 (903)
Q Consensus 701 -------------~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~---~~~~~~v~~sp~~~~ll 764 (903)
+....+| ..|+++.|.+|+..++-+.-.|..|.|||+.++.++... .+++.-+.|+|++.+++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 1223345 689999999998877645556789999999999876544 24667899999999999
Q ss_pred EEEcCCeEEEEEC-CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCc------------ceEEEee
Q 002591 765 AAAAENVVSILDA-ETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG------------ECVHELS 831 (903)
Q Consensus 765 ~~s~dg~I~i~D~-~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~------------~~i~~~~ 831 (903)
++..|+..++|.. .+..+..-.. ..+.|...+|+|+|.+|...+.+.-++|.+....+. ..+..+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred Eecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 9999999999954 4443333333 345899999999999766665554445544321110 0111110
Q ss_pred ---------cCCCceEEEEEeCCCCEEEEEECCC--------eEEEEECCCCcEEEEc--c--CCCCEEEEEEec---CC
Q 002591 832 ---------CNGNKFHSCVFHPTYPSLLVIGCYQ--------SLELWNMSENKTMTLT--A--HEGLIAALAVST---ET 887 (903)
Q Consensus 832 ---------~~~~~i~si~~sp~g~~l~t~s~dg--------~I~vwdl~~~~~~~~~--~--h~~~V~sl~~sp---dg 887 (903)
--.+.+.+++|.|.|.++++.-..+ .|.+||.+..-.+.+. + .......++|+| ++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 0145678999999999999986543 5777887766555332 1 111244455554 55
Q ss_pred CEEEEEecCCcEEEc
Q 002591 888 GYVASASHDKFVKLW 902 (903)
Q Consensus 888 ~~LaSgs~DG~I~IW 902 (903)
.+|..+=..|.|.-|
T Consensus 414 ~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRY 428 (445)
T ss_pred cEEEEEeccCceEee
Confidence 566666666766543
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-13 Score=140.47 Aligned_cols=269 Identities=14% Similarity=0.218 Sum_probs=195.2
Q ss_pred CCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCE-EEEEeCCCcEEEEeCCCCCcee
Q 002591 624 SKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSL 701 (903)
Q Consensus 624 ~~V~~l~fspdg~~La-tgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~Dg~I~IWDl~~~~~~~ 701 (903)
+.|.-|.|..|..+++ ....|+.|.+|++...+-...+......+..++|+|||+. |.+...|-.|.||.+.+.. .
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~ 126 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--G 126 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--e
Confidence 4677788887776554 4567889999999988888888888999999999999965 5566679999999998732 2
Q ss_pred EEeccCCCceEEEEecCCCCeEEEEEe-----------------------------------CCCcEEEEEcCCCeeeEE
Q 002591 702 RTFMGHSASVMSLDFHPNKDDLICSCD-----------------------------------GDGEIRYWSINNGSCTRV 746 (903)
Q Consensus 702 ~~~~~h~~~V~sl~fsp~~~~ll~sgs-----------------------------------~Dg~I~iwDi~t~~~~~~ 746 (903)
..+......+..++|+|+|....+..- ++..+.+||.--.-.+..
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 222323445677888888775432211 122344555332222222
Q ss_pred ee--cCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE---------------------------------------
Q 002591 747 FK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS--------------------------------------- 785 (903)
Q Consensus 747 ~~--~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~--------------------------------------- 785 (903)
++ .++..+.|+|.+..+++|+.|+.++|.+--+.+...+
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 22 3677899999999999999999888765322111110
Q ss_pred ---------------------ec------CCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEeecCCC
Q 002591 786 ---------------------LQ------GHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGN 835 (903)
Q Consensus 786 ---------------------l~------~h~~~V~sl~~spdg~~lasgs~d---~I~iwdl~s~~~~~~i~~~~~~~~ 835 (903)
++ .....+.-++|++|..|+++-.+. .+.+||+...+ ++.+-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~----l~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK----LHAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh----hhhhhhhcc
Confidence 00 011235568999999999998877 68999998653 222333467
Q ss_pred ceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecCCc
Q 002591 836 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 898 (903)
Q Consensus 836 ~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~ 898 (903)
+|....|+|....|+++.....+++|.......+......-.|..+.|.-+|..++..+.|..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999999999999999999999998888877777789999999999999999988864
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-13 Score=151.19 Aligned_cols=275 Identities=14% Similarity=0.160 Sum_probs=203.9
Q ss_pred cCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCc
Q 002591 621 ASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 699 (903)
Q Consensus 621 ~H~~~V~~l~fspdg~~L-atgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~ 699 (903)
.|....+.|..+|||.|| |||.+--.|++||+........-......|.-+-++.|-..++.-..|.+|.+..... .
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G--~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--R 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC--e
Confidence 477788999999999965 6677888999999987665554444455666666777777777777788887765432 1
Q ss_pred eeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceeEEEecCCCEEEEEEcCCeEEEEE
Q 002591 700 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 776 (903)
Q Consensus 700 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~---~~~~~v~~sp~~~~ll~~s~dg~I~i~D 776 (903)
... +. -...-.+++++.-...+++ ++....|+-++++.|..+..|. +.+.++.+++..+.|++|+.+|.|.+||
T Consensus 127 hy~-~R-IP~~GRDm~y~~~scDly~-~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 127 HYR-TR-IPKFGRDMKYHKPSCDLYL-VGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eee-ee-cCcCCccccccCCCccEEE-eecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 111 11 1233445666655555664 4446789999999999888775 4677888999999999999999999999
Q ss_pred CCCCeEEEEecC------CCC-----CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeC
Q 002591 777 AETQACRLSLQG------HTK-----PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 844 (903)
Q Consensus 777 ~~t~~~~~~l~~------h~~-----~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp 844 (903)
.++...+..+.. |.+ .|+++.|+.+|-.+++|+.. .|.|||+++... .+..-.....+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccCCccceeeecccc
Confidence 998766655542 333 39999999999999999888 999999998642 2223333466788899977
Q ss_pred CCCE-EEEEECCCeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecCCcEEEc
Q 002591 845 TYPS-LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 845 ~g~~-l~t~s~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
.+.. -++......++|||-.+|+..........++.+|+-|++.+|++|-+++.+..|
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 6333 333344468999999999999777777779999999999999999988876543
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.3e-14 Score=154.00 Aligned_cols=242 Identities=15% Similarity=0.193 Sum_probs=165.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce----eEEeccCCCCeEEEEE-----CCCCCEEEEEeCCCcEEEEeCC
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRF-----SPSMPRLATSSFDKTVRVWDAD 695 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~----~~~l~~h~~~V~~l~f-----spdg~~Lasgs~Dg~I~IWDl~ 695 (903)
.++...++-.|++|+..- ...++||+...+.. +....-....-+|-+| .+.+--|+.|-..|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 455566666777777653 34688888763211 1111111222334444 3456678888888999999876
Q ss_pred CCCceeEEec----cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeE--EEecCCCEEEEEEcC
Q 002591 696 NPGYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM--RFQPHLGRYLAAAAE 769 (903)
Q Consensus 696 ~~~~~~~~~~----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v--~~sp~~~~ll~~s~d 769 (903)
. ....+.+. -....|+||.|-|.++.+++++-.+|.+++||.+. ....... ...+++..+......
T Consensus 204 ~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 N-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred h-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence 5 22222121 13478999999999998988999999999998721 1111111 122233333222111
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 002591 770 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 848 (903)
Q Consensus 770 g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~ 848 (903)
...+..++..+.--.+.|..++|+|||++||+.+.| .+||||+.+. +.+..++..-+.+.+++|+|||++
T Consensus 276 ------sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 276 ------SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred ------ccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence 111123444444455689999999999999999999 9999999875 444455555778999999999999
Q ss_pred EEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEe
Q 002591 849 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 884 (903)
Q Consensus 849 l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~s 884 (903)
|++|+.|.-|.||.+.+++++ .-.+|.++|+.++|+
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999998 677999999999998
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-14 Score=164.10 Aligned_cols=266 Identities=15% Similarity=0.203 Sum_probs=187.4
Q ss_pred CCcccccccCcceeeeeEeecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECC-C----CceeEEecc-------CCC
Q 002591 601 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD-T----LKSKTNLEE-------HSS 666 (903)
Q Consensus 601 ~~~~~d~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~Latgs~Dg~V~vWd~~-t----~~~~~~l~~-------h~~ 666 (903)
..++|++.++-.+.-...-..-...|+.+++-. |..+|++|+.||.|+||+-. + .+.+..+.+ ..+
T Consensus 1087 ~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~ 1166 (1387)
T KOG1517|consen 1087 RIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARG 1166 (1387)
T ss_pred eEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCC
Confidence 446677776654444333334566899999865 45699999999999999732 2 233333321 222
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe---e
Q 002591 667 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---C 743 (903)
Q Consensus 667 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~---~ 743 (903)
.-.-++|.....+|++++.-..|+|||++.+..+...-.+....|+++.-.-.+..+|++|..||.|++||.+... .
T Consensus 1167 ~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~ 1246 (1387)
T KOG1517|consen 1167 TGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL 1246 (1387)
T ss_pred CCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccc
Confidence 2245677777677777777899999999985444444455667788887766666788899999999999998653 2
Q ss_pred eEEeec-----CceeEEEecCC-CEEEEEEcCCeEEEEECCCCeE--EEEecCCC---CCeEEEEEcCCCCEEEEEeCCe
Q 002591 744 TRVFKG-----GTAQMRFQPHL-GRYLAAAAENVVSILDAETQAC--RLSLQGHT---KPIDSVCWDPSGELLASVSEDS 812 (903)
Q Consensus 744 ~~~~~~-----~~~~v~~sp~~-~~ll~~s~dg~I~i~D~~t~~~--~~~l~~h~---~~V~sl~~spdg~~lasgs~d~ 812 (903)
+..++. ++..+.+.+.| +.+++++.+|.|++||++.... ...+..|. +.++++..++...++|+|+...
T Consensus 1247 v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ 1326 (1387)
T KOG1517|consen 1247 VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQL 1326 (1387)
T ss_pred ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcce
Confidence 333332 26667777765 5699999999999999998422 22222332 3599999999999999999889
Q ss_pred EEEEECCCCCCcceEEE----eecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCc
Q 002591 813 VRVWTVGSGSEGECVHE----LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 867 (903)
Q Consensus 813 I~iwdl~s~~~~~~i~~----~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~ 867 (903)
|+||++.... ...++. +.-....+.+++|||..-.+++|..|..|.||......
T Consensus 1327 ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1327 IKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EEEEecChhh-hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 9999986431 122211 11124567899999999999999999999999876543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-13 Score=156.08 Aligned_cols=273 Identities=23% Similarity=0.256 Sum_probs=196.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCC---EEEEEeCCCcEEEEeCCCCCceeE
Q 002591 626 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP---RLATSSFDKTVRVWDADNPGYSLR 702 (903)
Q Consensus 626 V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~---~Lasgs~Dg~I~IWDl~~~~~~~~ 702 (903)
-..-.|++|+++++... +..|.||.+.++.++..+.+|..+++.+.+.+... ++++++.||+|++||... +..++
T Consensus 19 ~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~-~~Llk 96 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD-GELLK 96 (792)
T ss_pred ecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC-cEEEE
Confidence 34456899999888775 55899999999999999999999999999987654 678999999999999987 77777
Q ss_pred EeccCCCceEEEEecCC---CCeEEEEEeCCCc------------EEEEEcCCCeee--EEeecC--ceeEEEecCCCEE
Q 002591 703 TFMGHSASVMSLDFHPN---KDDLICSCDGDGE------------IRYWSINNGSCT--RVFKGG--TAQMRFQPHLGRY 763 (903)
Q Consensus 703 ~~~~h~~~V~sl~fsp~---~~~ll~sgs~Dg~------------I~iwDi~t~~~~--~~~~~~--~~~v~~sp~~~~l 763 (903)
++..+ ..|..+.+.|. ..-.+..+..|.. ++-+.+.+.... ...+.. ...+.+.+. +.+
T Consensus 97 t~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~-ge~ 174 (792)
T KOG1963|consen 97 TFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS-GEF 174 (792)
T ss_pred EEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC-ceE
Confidence 77643 33444444221 1111112221211 111111111000 000111 234445444 455
Q ss_pred EEEEcCCeEEEEECCCCeEEEE----ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC-CCCcceEEEeecCCCce
Q 002591 764 LAAAAENVVSILDAETQACRLS----LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS-GSEGECVHELSCNGNKF 837 (903)
Q Consensus 764 l~~s~dg~I~i~D~~t~~~~~~----l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s-~~~~~~i~~~~~~~~~i 837 (903)
.....+..+.+|+..+...... -..|...+++.+++|+++++|++..| .|.+|.--. .........+.-|...|
T Consensus 175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V 254 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV 254 (792)
T ss_pred EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence 5556667788888877541111 12366779999999999999999988 999996543 33345556777889999
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecCCcEEEc
Q 002591 838 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 838 ~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
.+++|+++|.+|++||.++.+.+|.+.+++...+..-.++|..+.++||+.+.+....|+.|.+-
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 99999999999999999999999999999977888889999999999999999999999998763
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.1e-13 Score=153.39 Aligned_cols=232 Identities=14% Similarity=0.146 Sum_probs=167.1
Q ss_pred CcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeC---CCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCC
Q 002591 645 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 721 (903)
Q Consensus 645 g~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 721 (903)
..|.+||.+... .+.+..+...+.+.+|+|||+.|+..+. +..|++||+.+ +.. +.+......+..++|+|++.
T Consensus 179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~~-~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAV-RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CCe-EEccCCCCCcCCeEECCCCC
Confidence 468899987543 4445567778999999999999887653 45699999986 432 23333334455689999999
Q ss_pred eEEEEEeCCC--cEEEEEcCCCeeeEEeec--CceeEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCeE
Q 002591 722 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPID 794 (903)
Q Consensus 722 ~ll~sgs~Dg--~I~iwDi~t~~~~~~~~~--~~~~v~~sp~~~~ll~~s~d-g--~I~i~D~~t~~~~~~l~~h~~~V~ 794 (903)
.++++.+.+| .|++||+.+++....... ......|+|+++.++.++.+ + .|+++|+.++... .+..+...+.
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766665 488999998876654433 45678899999998887764 3 5666688776543 3333444566
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCC---eEEEEECCCCc
Q 002591 795 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 867 (903)
Q Consensus 795 sl~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg---~I~vwdl~~~~ 867 (903)
+.+|+|||++|+..+.+ .|++||+.++.. . .+.. ........|+|||++|+.++.++ .++++++....
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~---~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-Q---VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe-E---EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 78999999988776543 588999977632 2 2221 12234678999999999999876 47888997777
Q ss_pred EEEEccCCCCEEEEEEec
Q 002591 868 TMTLTAHEGLIAALAVST 885 (903)
Q Consensus 868 ~~~~~~h~~~V~sl~~sp 885 (903)
...+..|.+.+...+|+|
T Consensus 410 ~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 KARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEECccCCCCcCCcccCC
Confidence 777888889999999987
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=153.25 Aligned_cols=191 Identities=24% Similarity=0.290 Sum_probs=152.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEec-
Q 002591 627 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM- 705 (903)
Q Consensus 627 ~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~- 705 (903)
.+++|+.+|..|++|+.||++|||++.....+..+..|...|.++.|+||+++|++-+.| ..+||++++ +.++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~-g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT-GAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc-CchhhhcCC
Confidence 789999999999999999999999999888888889999999999999999999999999 899999998 44444333
Q ss_pred -cCCCceEEEEecCCC---Ce-EEEEEeCCCcEEEEEcCCCee---eE---Ee--ecCceeEEEecCCCEEEEEEcCCeE
Q 002591 706 -GHSASVMSLDFHPNK---DD-LICSCDGDGEIRYWSINNGSC---TR---VF--KGGTAQMRFQPHLGRYLAAAAENVV 772 (903)
Q Consensus 706 -~h~~~V~sl~fsp~~---~~-ll~sgs~Dg~I~iwDi~t~~~---~~---~~--~~~~~~v~~sp~~~~ll~~s~dg~I 772 (903)
.....+..+.|+.++ .. +++....-+.|+.||+...+. .+ .. ...+.+++++.+|+++++++.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 233445567787664 22 333334456677777653322 11 11 2367889999999999999999999
Q ss_pred EEEECCCCeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 002591 773 SILDAETQACRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 819 (903)
Q Consensus 773 ~i~D~~t~~~~~~l~-~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~ 819 (903)
.|++..+.+++..++ .|...|+.+.|+||.+++++.+.+ .+.|..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 999999988777654 599999999999999999998888 77777664
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=154.71 Aligned_cols=206 Identities=16% Similarity=0.204 Sum_probs=166.3
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEE
Q 002591 636 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 715 (903)
Q Consensus 636 ~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~ 715 (903)
..|+.++.||.+.|.+ +.++..+.+..|.+.|.|-+|++||.-|++++.||.|+||.-. +....++.....+|+|++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHHHhhcCceeEEEE
Confidence 4678888999999987 5678888999999999999999999999999999999999865 444555666778999999
Q ss_pred ecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC
Q 002591 716 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP 792 (903)
Q Consensus 716 fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~---~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~ 792 (903)
|.|+.+.++++.+ +.+.|=-+.....+-.+ .+-+.++.|++..+.+++++.|-..+|||.. |..++.-..|+.+
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 9999998886654 45555555444333333 3457788999999999999999999999975 5666666779999
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEE
Q 002591 793 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 862 (903)
Q Consensus 793 V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwd 862 (903)
|++++|.|+ +.++.++..++++=..+ .+.|..++|++||..+++|+..|.|.+-.
T Consensus 230 ITSva~npd-~~~~v~S~nt~R~~~p~--------------~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYNTARFSSPR--------------VGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred eeeeeeccc-cceeeeeeeeeeecCCC--------------ccceEEEEEcCCCceeeccccCceEEEee
Confidence 999999999 77888888777733332 56789999999999999999998765543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-12 Score=144.03 Aligned_cols=268 Identities=18% Similarity=0.304 Sum_probs=188.3
Q ss_pred CeEEEEEcCCCCEEEEEe-----C-----CCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 002591 625 KVICCHFSSDGKLLATGG-----H-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 694 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs-----~-----Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 694 (903)
.++++.|+|-|.+|.|-- . .-.+.+|+++++.....+......-+++.|+.|..+.+- -..+.|.+|++
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhh-hhcceEEEEec
Confidence 799999999999998721 1 235779999996666666544444479999998764322 22566999999
Q ss_pred CCCCceeEEeccCCCceEEEEecCC-CCeEEEE-----EeCCCcEEEEEcCCCe------eeEEeecCceeEEEecCCCE
Q 002591 695 DNPGYSLRTFMGHSASVMSLDFHPN-KDDLICS-----CDGDGEIRYWSINNGS------CTRVFKGGTAQMRFQPHLGR 762 (903)
Q Consensus 695 ~~~~~~~~~~~~h~~~V~sl~fsp~-~~~ll~s-----gs~Dg~I~iwDi~t~~------~~~~~~~~~~~v~~sp~~~~ 762 (903)
.+.......+ |...|..+.++|. ....+|+ .+.-+.|+||.+.... +..-|+.....+.|.+.+.-
T Consensus 154 ~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 154 GSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA 231 (566)
T ss_pred CCccceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence 8743333333 5778999999987 3334433 3445779999887322 22334556667888888754
Q ss_pred EEE-EEc-----------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE-e-CC-eEEEEECCCCCCcceE
Q 002591 763 YLA-AAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-S-ED-SVRVWTVGSGSEGECV 827 (903)
Q Consensus 763 ll~-~s~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasg-s-~d-~I~iwdl~s~~~~~~i 827 (903)
|++ ++. +.+++++++....++..+. ..++|++++|+++++-|+++ + .- .+.|||++. ..+
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----~~v 306 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----KPV 306 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC----CEe
Confidence 443 332 2378888888556666555 57999999999999844443 3 33 899999964 333
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEECC---CeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEec------CCc
Q 002591 828 HELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH------DKF 898 (903)
Q Consensus 828 ~~~~~~~~~i~si~~sp~g~~l~t~s~d---g~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~------DG~ 898 (903)
..+ ..++-.++-|+|.|++|+.+|.+ |.|.|||+.+.+++..... ..-+-+.|+|||.+|+|+.. |+.
T Consensus 307 ~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-~~tt~~eW~PdGe~flTATTaPRlrvdNg 383 (566)
T KOG2315|consen 307 FDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-ANTTVFEWSPDGEYFLTATTAPRLRVDNG 383 (566)
T ss_pred EeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-CCceEEEEcCCCcEEEEEeccccEEecCC
Confidence 333 36777889999999999999887 6999999999777733222 22455789999999999874 677
Q ss_pred EEEcC
Q 002591 899 VKLWK 903 (903)
Q Consensus 899 I~IWd 903 (903)
++||+
T Consensus 384 ~Kiwh 388 (566)
T KOG2315|consen 384 IKIWH 388 (566)
T ss_pred eEEEE
Confidence 88884
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-13 Score=143.88 Aligned_cols=237 Identities=16% Similarity=0.182 Sum_probs=160.7
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I 691 (903)
.|...+.+++|.+.|+.++|++|+.++++++.|..+++||+..|..+..+.+|...|..++|.|-+.++++-+.|...++
T Consensus 112 ~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~ 191 (434)
T KOG1009|consen 112 KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEG 191 (434)
T ss_pred ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccce
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999987777
Q ss_pred EeCCCCCceeEEeccCCC-ceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEc--
Q 002591 692 WDADNPGYSLRTFMGHSA-SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-- 768 (903)
Q Consensus 692 WDl~~~~~~~~~~~~h~~-~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~-- 768 (903)
+++.... .+. .|.. .+....+.+. .....++|.-++.+ .-...++|+|++..+++.+.
T Consensus 192 ~~~~~~~-~~~---~~~~~~m~~~~~~~~---------e~~s~rLfhDeTlk------sFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 192 FSAKLKQ-VIK---RHGLDIMPAKAFNER---------EGKSTRLFHDETLK------SFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred eeeeeee-eee---eeeeeEeeecccCCC---------CcceeeeeecCchh------hhhhhcccCCCCcEEEccccee
Confidence 7765411 111 1110 0111111111 11122222222211 12334556666666655432
Q ss_pred --C-----CeEEEEECCCC-eEEEEecCCCCCeEEEEEcC------------------CCCEEEEEeCCeEEEEECCCCC
Q 002591 769 --E-----NVVSILDAETQ-ACRLSLQGHTKPIDSVCWDP------------------SGELLASVSEDSVRVWTVGSGS 822 (903)
Q Consensus 769 --d-----g~I~i~D~~t~-~~~~~l~~h~~~V~sl~~sp------------------dg~~lasgs~d~I~iwdl~s~~ 822 (903)
+ +..++|+-... +++..+.+...++..+.|+| -+..++.++.+.|+|||..+..
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~ 332 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLE 332 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccccc
Confidence 1 23344443322 34444444444544444443 3446788888899999998765
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE
Q 002591 823 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 869 (903)
Q Consensus 823 ~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~ 869 (903)
...++.. .|...|+.++|+++|..+++.+.||...+..++..++-
T Consensus 333 P~~~v~n--ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 333 PLAVVDN--IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ceEEEee--eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 4444443 46788999999999999999999997777766655543
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-13 Score=139.49 Aligned_cols=271 Identities=18% Similarity=0.202 Sum_probs=191.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEE-eCCCcEEEEeCCCCCceeEEecc
Q 002591 628 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMG 706 (903)
Q Consensus 628 ~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~IWDl~~~~~~~~~~~~ 706 (903)
-++|||+|++||+++.- .+.|-|.++.+....+.. -+.|.-|.|..|..+++++ ..|+.|.+|++..+. -...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-w~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-WYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecce-eEEEecc
Confidence 46899999999999755 788889888766555443 4568889999888877666 558899999998743 3455666
Q ss_pred CCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEE--eecCceeEEEecCCCEEEEEEcC---------------
Q 002591 707 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAAE--------------- 769 (903)
Q Consensus 707 h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~--~~~~~~~v~~sp~~~~ll~~s~d--------------- 769 (903)
....+.+++|+|+|++++.+..-|-.|.+|.+.+.++... -+..+..++|++++.+.+.++.-
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 7788999999999999999999999999999998775432 23455666777776655444331
Q ss_pred ---------------------CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-----
Q 002591 770 ---------------------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS----- 822 (903)
Q Consensus 770 ---------------------g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~----- 822 (903)
+.+.+||.--...+..++ -.-.+..+.|+|.+.+|+.|+.| .+||.+--+.+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 123334332222211111 22467889999999999999999 77764421110
Q ss_pred ------------------------------------------C----------cceEEEee------cCCCceEEEEEeC
Q 002591 823 ------------------------------------------E----------GECVHELS------CNGNKFHSCVFHP 844 (903)
Q Consensus 823 ------------------------------------------~----------~~~i~~~~------~~~~~i~si~~sp 844 (903)
. ...+..++ .....+..++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 0 00011111 1122356789999
Q ss_pred CCCEEEEEECC--CeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecCCcEEEc
Q 002591 845 TYPSLLVIGCY--QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 845 ~g~~l~t~s~d--g~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
|..++++-... +.+.+||+...++..+.....+|.+..|+|....|+.+.....+++|
T Consensus 329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred CceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence 99888776554 58999999999888777778899999999998888887777778888
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-13 Score=142.92 Aligned_cols=261 Identities=13% Similarity=0.189 Sum_probs=197.5
Q ss_pred cCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCceeEE------eccCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 002591 621 ASTSKVICCHFSSDGK--LLATGGHDKKAVLWHTDTLKSKTN------LEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 692 (903)
Q Consensus 621 ~H~~~V~~l~fspdg~--~Latgs~Dg~V~vWd~~t~~~~~~------l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW 692 (903)
.-...|..++|..++. .|...+.|..+..+++........ .......|..++... ..|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d--g~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD--GTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC--CEEEEEecCCcEEEE
Confidence 3456788888887664 555555777788887765554443 334556676666543 378888889999999
Q ss_pred eCCCCC---ceeEEeccCCCceEEEEecCCCCeEEEEEeCC--CcEEEEEcCCCeeeEEeec------------CceeEE
Q 002591 693 DADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRVFKG------------GTAQMR 755 (903)
Q Consensus 693 Dl~~~~---~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D--g~I~iwDi~t~~~~~~~~~------------~~~~v~ 755 (903)
..+.+. ..+..+..+ ..+..+.-++...+++++|+.. ..+.|||++..+.+..-+. -...+.
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 987422 233334333 5577788888889999999999 8999999998754433221 134577
Q ss_pred EecC--CCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEee
Q 002591 756 FQPH--LGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 831 (903)
Q Consensus 756 ~sp~--~~~ll~~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~ 831 (903)
|.+. ...|++++.-+.|++||.+.+ +++..|.-.+.+|+++...|++++|+++..- .+..||++.+... ...+.
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~--g~~~k 287 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL--GCGLK 287 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee--ccccC
Confidence 8777 788999999999999999987 6788888888999999999999999999887 9999999987322 22356
Q ss_pred cCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEEEEccCCCCEEEEEEecC
Q 002591 832 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE 886 (903)
Q Consensus 832 ~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~spd 886 (903)
+..+.|.++..+|..+++++++-|+.|+|+|+.+.+++.-......+++|.+.++
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 6678899999999999999999999999999999777644445556667766543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4e-13 Score=138.61 Aligned_cols=235 Identities=17% Similarity=0.295 Sum_probs=179.6
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCC--ceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEE
Q 002591 660 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 737 (903)
Q Consensus 660 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwD 737 (903)
.+.....+|+|.+|++|...+|++.....|.||...... +..+++..|...|++|+|.|..++++ +|+.|..-++|.
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~ 83 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWT 83 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCccccc
Confidence 344456789999999999999999999999999987643 56789999999999999999988765 999999999999
Q ss_pred cC-CCe-----eeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeE----EEEecCCCCCeEEEEEcCCCCEEEE
Q 002591 738 IN-NGS-----CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLAS 807 (903)
Q Consensus 738 i~-t~~-----~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~----~~~l~~h~~~V~sl~~spdg~~las 807 (903)
.. .++ .+..+.....++.|+|.++.|++++....|.||-.+...- .+.-+.+.+.|+++.|+|++-++++
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 84 333 3345667889999999999999999999999887664321 1222346788999999999999999
Q ss_pred EeCC-eEEEEECC-----CCC----------CcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCc--EE
Q 002591 808 VSED-SVRVWTVG-----SGS----------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--TM 869 (903)
Q Consensus 808 gs~d-~I~iwdl~-----s~~----------~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~--~~ 869 (903)
|+.| ..+||..- ... -...+.++....+.+..+.|+|.|..|+-.+.|..|.+-|..... ..
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~ 243 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQ 243 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhcc
Confidence 9999 88888642 110 012233444557789999999999999999999999999988775 33
Q ss_pred EEccCCCCEEEEEEecCCCEEEEEecC
Q 002591 870 TLTAHEGLIAALAVSTETGYVASASHD 896 (903)
Q Consensus 870 ~~~~h~~~V~sl~~spdg~~LaSgs~D 896 (903)
.+....-+..++.|-.+.. ++.+++|
T Consensus 244 ~~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 244 SVATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred chhhccCCceeeEeecCCc-eeecCCC
Confidence 3333336667777754432 3333444
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-12 Score=149.79 Aligned_cols=231 Identities=17% Similarity=0.239 Sum_probs=166.6
Q ss_pred CcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeC---CCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCC
Q 002591 645 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 721 (903)
Q Consensus 645 g~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 721 (903)
..|.+||.+ +...+.+..|...|.+.+|+|||+.|+..+. +..|++||+.+ +. ...+..+.+.+.+.+|+|+|+
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~-~~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQ-RELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-Cc-EEEeecCCCcccCcEECCCCC
Confidence 478888875 4555667788889999999999999888764 46799999986 33 344555667788899999999
Q ss_pred eEEEEEeCCCc--EEEEEcCCCeeeEEeec--CceeEEEecCCCEEEEEEc-C--CeEEEEECCCCeEEEEecCCCCCeE
Q 002591 722 DLICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPID 794 (903)
Q Consensus 722 ~ll~sgs~Dg~--I~iwDi~t~~~~~~~~~--~~~~v~~sp~~~~ll~~s~-d--g~I~i~D~~t~~~~~~l~~h~~~V~ 794 (903)
.++++.+.++. |++||+.++........ ......|+|++..++.++. + ..|+++|+..++... +..+...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 88878777665 77789888776544332 2456889999998887764 3 368889987765543 333455667
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECC------CeEEEEECC
Q 002591 795 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY------QSLELWNMS 864 (903)
Q Consensus 795 sl~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~d------g~I~vwdl~ 864 (903)
...|+|+|++|+....+ .|.+||+..+. ...+.. ...+....|+|||+.|+..+.+ ..|+++|+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 78999999988776543 68888875442 122222 2346678999999998876653 268888988
Q ss_pred CCcEEEEccCCCCEEEEEEec
Q 002591 865 ENKTMTLTAHEGLIAALAVST 885 (903)
Q Consensus 865 ~~~~~~~~~h~~~V~sl~~sp 885 (903)
.+....+. ..+.+...+|+|
T Consensus 413 g~~~~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 413 GRNEREVP-TPGDASDPAWSP 432 (435)
T ss_pred CCceEEcc-CCCCccCcccCC
Confidence 77665544 355577778876
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-12 Score=151.06 Aligned_cols=232 Identities=17% Similarity=0.145 Sum_probs=165.9
Q ss_pred CcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCceeEEeccCCCceEEEEecCCCC
Q 002591 645 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 721 (903)
Q Consensus 645 g~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 721 (903)
..|.+||.+ +...+.+..+...+.+.+|+||++.|+.++.+ ..|++||+.+ +.. ..+..+.+...++.|+|+++
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~-~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQR-ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCE-EEeccCCCCccCceECCCCC
Confidence 468999985 44556677778889999999999999988753 4699999976 332 33344445556789999999
Q ss_pred eEEEEEeCCC--cEEEEEcCCCeeeEEeec--CceeEEEecCCCEEEEEEc-CC--eEEEEECCCCeEEEEecCCCCCeE
Q 002591 722 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHTKPID 794 (903)
Q Consensus 722 ~ll~sgs~Dg--~I~iwDi~t~~~~~~~~~--~~~~v~~sp~~~~ll~~s~-dg--~I~i~D~~t~~~~~~l~~h~~~V~ 794 (903)
.++++.+.+| .|++||+.+++....... .....+|+|++..++.++. ++ .|+++|+.+++..... .+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCcc
Confidence 8887777666 599999998876543322 2356889999998888765 33 4777888777644322 2334455
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECC---CeEEEEECCCCc
Q 002591 795 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENK 867 (903)
Q Consensus 795 sl~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~d---g~I~vwdl~~~~ 867 (903)
.++|+|||++|+..+.+ .|.+||+.++.. ..+.. ........|+|+|++|+..+.+ ..|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~----~~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV----RTLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe----EECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 78999999988765432 699999977632 12221 2234567899999998887764 378889997766
Q ss_pred EEEEccCCCCEEEEEEec
Q 002591 868 TMTLTAHEGLIAALAVST 885 (903)
Q Consensus 868 ~~~~~~h~~~V~sl~~sp 885 (903)
...+..+.+.+...+|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666666777788888876
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.3e-14 Score=149.69 Aligned_cols=194 Identities=22% Similarity=0.269 Sum_probs=139.9
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee
Q 002591 669 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 748 (903)
Q Consensus 669 ~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~ 748 (903)
.+++|+.+|..|++++.||++|||+..+ ...+.....|...|.++.|+||+. +|++-+.| ..+||+++++.++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCchhhhcC
Confidence 7899999999999999999999999876 455666677999999999999987 45577777 99999999985544332
Q ss_pred cCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC---C-EEEEEeC-C-eEEEEECCCCC
Q 002591 749 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG---E-LLASVSE-D-SVRVWTVGSGS 822 (903)
Q Consensus 749 ~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg---~-~lasgs~-d-~I~iwdl~s~~ 822 (903)
... ....+..+.|+.|+ . ++++.-. . .|+.||+....
T Consensus 225 ~~~-------------------------------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~ 267 (398)
T KOG0771|consen 225 PFS-------------------------------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS 267 (398)
T ss_pred Ccc-------------------------------------cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence 100 11122233344333 1 1222111 1 45555543322
Q ss_pred Cc--ceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE--EEccCCCCEEEEEEecCCCEEEEEecCCc
Q 002591 823 EG--ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKF 898 (903)
Q Consensus 823 ~~--~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~--~~~~h~~~V~sl~~spdg~~LaSgs~DG~ 898 (903)
.. ............|.+++.+++|++++.|+.||.|-||+..+-+++ ...+|...|+.+.|+||.+++++.+.|..
T Consensus 268 ~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 268 GSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred cccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence 11 111222223557999999999999999999999999999998887 44589999999999999999999988887
Q ss_pred EEEc
Q 002591 899 VKLW 902 (903)
Q Consensus 899 I~IW 902 (903)
+.|.
T Consensus 348 ~~v~ 351 (398)
T KOG0771|consen 348 AAVT 351 (398)
T ss_pred eeEE
Confidence 7663
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-11 Score=127.38 Aligned_cols=229 Identities=17% Similarity=0.263 Sum_probs=162.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCC--CeEEEEECCCCCEEE-EEeCC------CcEEEEeCC
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS--LITDVRFSPSMPRLA-TSSFD------KTVRVWDAD 695 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~--~V~~l~fspdg~~La-sgs~D------g~I~IWDl~ 695 (903)
...+++|+-|...+++|..+| .+||+++..+....-..+.+ .+..+-|- .++|+ +|+.+ ..|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 455699999999999997665 89999886544333332322 23333332 23443 33332 469999944
Q ss_pred CCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcC-CCeeeEEeec---CceeEEEecCCC-EEEEE--Ec
Q 002591 696 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKG---GTAQMRFQPHLG-RYLAA--AA 768 (903)
Q Consensus 696 ~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~-t~~~~~~~~~---~~~~v~~sp~~~-~ll~~--s~ 768 (903)
. .+++.++. ...+|.++++.++ +++ +. .++.|+||... +.+.++.++. +..-+++.|..+ .+++. -.
T Consensus 84 k-~~~i~el~-f~~~I~~V~l~r~--riV-vv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 84 K-ERCIIELS-FNSEIKAVKLRRD--RIV-VV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK 157 (346)
T ss_pred c-CcEEEEEE-eccceeeEEEcCC--eEE-EE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence 3 66666665 6788999999876 233 33 37899999988 4555665543 223344455443 33332 22
Q ss_pred CCeEEEEECCCCeE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeec--CCCceEEEEE
Q 002591 769 ENVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC--NGNKFHSCVF 842 (903)
Q Consensus 769 dg~I~i~D~~t~~~--~~~l~~h~~~V~sl~~spdg~~lasgs~d--~I~iwdl~s~~~~~~i~~~~~--~~~~i~si~~ 842 (903)
-|.|.|.|+...+. ...+.+|.+.|.|++.+-+|.+||+++.. -|||||..+++ .+.++.. ....|.+++|
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~---~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT---LLQELRRGVDRADIYCIAF 234 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc---EeeeeecCCchheEEEEEe
Confidence 58999999987765 47788999999999999999999999988 69999999984 4444432 2456999999
Q ss_pred eCCCCEEEEEECCCeEEEEECCC
Q 002591 843 HPTYPSLLVIGCYQSLELWNMSE 865 (903)
Q Consensus 843 sp~g~~l~t~s~dg~I~vwdl~~ 865 (903)
+|+..+|++++..|+|+||.++.
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999999999998865
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.3e-13 Score=137.13 Aligned_cols=241 Identities=18% Similarity=0.349 Sum_probs=168.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cc----eeEEeccC------------CCCeEEEEECCCCC--EEEE
Q 002591 622 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LK----SKTNLEEH------------SSLITDVRFSPSMP--RLAT 682 (903)
Q Consensus 622 H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t-~~----~~~~l~~h------------~~~V~~l~fspdg~--~Las 682 (903)
..+-|.+|.|..+|.+||||..+|.|.+|.-+. .+ ....+..| ...|..|+|.+++. .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 356799999999999999999999999997442 21 22333333 34689999988765 5777
Q ss_pred EeCCCcEEEEeCCCCCce----------------------------------eEEe-ccCCCceEEEEecCCCCeEEEEE
Q 002591 683 SSFDKTVRVWDADNPGYS----------------------------------LRTF-MGHSASVMSLDFHPNKDDLICSC 727 (903)
Q Consensus 683 gs~Dg~I~IWDl~~~~~~----------------------------------~~~~-~~h~~~V~sl~fsp~~~~ll~sg 727 (903)
...|++|++|.+...+.. .+.+ ..|+-.|.+|.++.|...++ ++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec
Confidence 778999999988642211 1111 25888899999999987666 54
Q ss_pred eCCCcEEEEEcCCCe-eeEE--ee--------cCceeEEEecCC-CEEEEEEcCCeEEEEECCCCeEE------EE----
Q 002591 728 DGDGEIRYWSINNGS-CTRV--FK--------GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACR------LS---- 785 (903)
Q Consensus 728 s~Dg~I~iwDi~t~~-~~~~--~~--------~~~~~v~~sp~~-~~ll~~s~dg~I~i~D~~t~~~~------~~---- 785 (903)
+|=.|.+|+++--. +... ++ .-++...|+|.. +.++..++.|+|++.|++...+. ..
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 48899999987432 2221 11 124556788876 56777888999999999843211 11
Q ss_pred ------ecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCC---------------CceEEEEEeC
Q 002591 786 ------LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG---------------NKFHSCVFHP 844 (903)
Q Consensus 786 ------l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~---------------~~i~si~~sp 844 (903)
+..-...|..+.|+++|+|+++-..-+|+|||+..... .+..+..|. ..-..|+|+.
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~--pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAK--PVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCC--cceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 11112457889999999999988777999999965432 233322221 1234678999
Q ss_pred CCCEEEEEECCCeEEEEECCCC
Q 002591 845 TYPSLLVIGCYQSLELWNMSEN 866 (903)
Q Consensus 845 ~g~~l~t~s~dg~I~vwdl~~~ 866 (903)
++.++++|+..+.+++|++..|
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CcceEecccccceEEEecCCCC
Confidence 9999999999999999996544
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.6e-11 Score=131.78 Aligned_cols=271 Identities=14% Similarity=0.176 Sum_probs=186.7
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--c--eeEEeccCCCCeEEEEECCCCCEEEEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGH----DKKAVLWHTDTL--K--SKTNLEEHSSLITDVRFSPSMPRLATS 683 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~----Dg~V~vWd~~t~--~--~~~~l~~h~~~V~~l~fspdg~~Lasg 683 (903)
.+..+..+. -......+++++++++|+++.. ++.|..|++... . .+.+.......-..|++++++++|+++
T Consensus 26 ~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 26 TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEE
Confidence 555555533 3445677999999999999876 468999987753 2 333344345566789999999999999
Q ss_pred eC-CCcEEEEeCCCCCceeEE---ec----------cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe--eeE--
Q 002591 684 SF-DKTVRVWDADNPGYSLRT---FM----------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTR-- 745 (903)
Q Consensus 684 s~-Dg~I~IWDl~~~~~~~~~---~~----------~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~--~~~-- 745 (903)
.. +|.|.+|++...+..... +. .......++.|+|++++++++.-....|++|++.... ...
T Consensus 105 ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 105 NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE
T ss_pred EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee
Confidence 86 899999999875543332 11 1235578999999999888777667889999998765 322
Q ss_pred Eee----cCceeEEEecCCCEEEEEEc-CCeEEEEECC--CCe--EEEEecCC------CCCeEEEEEcCCCCEEEEEeC
Q 002591 746 VFK----GGTAQMRFQPHLGRYLAAAA-ENVVSILDAE--TQA--CRLSLQGH------TKPIDSVCWDPSGELLASVSE 810 (903)
Q Consensus 746 ~~~----~~~~~v~~sp~~~~ll~~s~-dg~I~i~D~~--t~~--~~~~l~~h------~~~V~sl~~spdg~~lasgs~ 810 (903)
.+. .+...+.|+|+++++++... ++.|.+|++. ++. .+..+... ......|+++|||++|+++..
T Consensus 185 ~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 185 SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence 222 24577999999998877766 6789999888 443 22222211 125788999999998888776
Q ss_pred C--eEEEEECCC-CCCcceEEEeecCCCceEEEEEeCCCCEEEEEECC-CeEEEEEC--CCCcEEEEc--cCCCCEEEEE
Q 002591 811 D--SVRVWTVGS-GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNM--SENKTMTLT--AHEGLIAALA 882 (903)
Q Consensus 811 d--~I~iwdl~s-~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~d-g~I~vwdl--~~~~~~~~~--~h~~~V~sl~ 882 (903)
+ .|.+|++.. ......+..+.........++++|+|++|+++..+ +.|.+|++ .+|.+.... ..-....||.
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 6 899999943 33455666666656678999999999999998854 68999876 566655332 2344556665
Q ss_pred E
Q 002591 883 V 883 (903)
Q Consensus 883 ~ 883 (903)
|
T Consensus 345 f 345 (345)
T PF10282_consen 345 F 345 (345)
T ss_dssp E
T ss_pred C
Confidence 5
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-14 Score=162.48 Aligned_cols=247 Identities=20% Similarity=0.252 Sum_probs=186.5
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I 691 (903)
+-.+....+||.+.|+.++.+.+..++|+++.|..|++|.+.++.++..+.+|++.|++|+|+|-- +.+.||++++
T Consensus 221 t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~ 296 (1113)
T KOG0644|consen 221 TARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRI 296 (1113)
T ss_pred chhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEe
Confidence 446778899999999999999999999999999999999999999999999999999999999964 7788999999
Q ss_pred EeCC-CCCc-eeEEec-cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCC-CEEEEEE
Q 002591 692 WDAD-NPGY-SLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL-GRYLAAA 767 (903)
Q Consensus 692 WDl~-~~~~-~~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~-~~ll~~s 767 (903)
||.+ .... .-+-+. ....-+.++-|...+..++ |++.|++-..|.+....+....- .-+..+.+. ...+++-
T Consensus 297 wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~-Tgs~d~ea~n~e~~~l~~~~~~l---if~t~ssd~~~~~~~ar 372 (1113)
T KOG0644|consen 297 WDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL-TGSRDGEARNHEFEQLAWRSNLL---IFVTRSSDLSSIVVTAR 372 (1113)
T ss_pred ccccccccccCCCCCCcccccceeeeeccccccccc-cccCCcccccchhhHhhhhccce---EEEeccccccccceeee
Confidence 9997 1100 000011 1224566677766666554 99999999999876543221110 001111111 4455566
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 002591 768 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 845 (903)
Q Consensus 768 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~-~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~ 845 (903)
.+-.+.+|++.++...+.+.+|...+..+.++|-.. +..+++.| ...|||+-.+...+... .+ ...+....|+++
T Consensus 373 ~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~--~g-h~kl~d~kFSqd 449 (1113)
T KOG0644|consen 373 NDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF--IG-HGKLVDGKFSQD 449 (1113)
T ss_pred eeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee--cc-cceeeccccCCC
Confidence 678899999999999999999999999999999655 55567777 99999998774433333 23 567888899999
Q ss_pred CCEEEEEECCCeEEEEECCCCcEE
Q 002591 846 YPSLLVIGCYQSLELWNMSENKTM 869 (903)
Q Consensus 846 g~~l~t~s~dg~I~vwdl~~~~~~ 869 (903)
|..++....-|.++|+....++..
T Consensus 450 gts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 450 GTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CceEecCCCCCceEEeccCCCccc
Confidence 999999888899999987665543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-11 Score=143.09 Aligned_cols=203 Identities=16% Similarity=0.209 Sum_probs=146.4
Q ss_pred cEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEe--CCCcEEEEEcCCCeee--EEeecCceeEEEecCCCEE
Q 002591 688 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCT--RVFKGGTAQMRFQPHLGRY 763 (903)
Q Consensus 688 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs--~Dg~I~iwDi~t~~~~--~~~~~~~~~v~~sp~~~~l 763 (903)
.|.+||.+. ...+.+..+...+.+.+|+|+|..++++.. .+..|++||+.+++.. ..+.+......|+|++..+
T Consensus 180 ~l~~~d~dg--~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDG--YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCC--CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence 688888874 234445557778999999999988776543 2457999999988643 3455666778999999988
Q ss_pred EEEEc-CC--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCc
Q 002591 764 LAAAA-EN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 836 (903)
Q Consensus 764 l~~s~-dg--~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~ 836 (903)
+.... ++ .|++||+++++.... ..+...+...+|+|||+.|+..+.+ .|+++|+.++. ...+......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~lt~~~~~ 332 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRITWEGSQ 332 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEeecCCCC
Confidence 87643 44 599999998876544 3345567889999999988766653 45555665542 2222233444
Q ss_pred eEEEEEeCCCCEEEEEECC---CeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecCCc
Q 002591 837 FHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 898 (903)
Q Consensus 837 i~si~~sp~g~~l~t~s~d---g~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~ 898 (903)
.....|+|+|++|+..+.+ ..|++||+.+++...+... .......|+|||++|+.++.|+.
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCC
Confidence 5678899999999887654 3689999998887655432 23457889999999999988875
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-11 Score=142.98 Aligned_cols=233 Identities=17% Similarity=0.151 Sum_probs=157.9
Q ss_pred CcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCceeEEeccCCCceEEEEecCCCC
Q 002591 645 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 721 (903)
Q Consensus 645 g~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 721 (903)
..|.+||. .+.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+ +.. ..+....+.+.+..|+|++.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~-~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRR-RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCE-EEeecCCCCccceEECCCCC
Confidence 45777776 455556666788889999999999999887753 3599999987 433 23333445567899999999
Q ss_pred eEEEEEeCCCcEEEEE--cCCCeeeEEee--cCceeEEEecCCCEEEEEEc-CCe--EEEEECCCCeEEEEecCCCCCeE
Q 002591 722 DLICSCDGDGEIRYWS--INNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENV--VSILDAETQACRLSLQGHTKPID 794 (903)
Q Consensus 722 ~ll~sgs~Dg~I~iwD--i~t~~~~~~~~--~~~~~v~~sp~~~~ll~~s~-dg~--I~i~D~~t~~~~~~l~~h~~~V~ 794 (903)
.++++.+.+|...||. +..+....... .......|+|++..++.++. ++. |+++++.+++..... .+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence 8887888888766665 44444332222 23456789999998887665 344 444565555433222 2233345
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCC---eEEEEECCCCc
Q 002591 795 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 867 (903)
Q Consensus 795 sl~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg---~I~vwdl~~~~ 867 (903)
..+|+|||++|+..+.+ .|++||+.++.. ..+.. ........|+|++++|+.++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 67899999988876543 599999987632 12221 22345679999999999888664 57777885544
Q ss_pred EEEEccCCCCEEEEEEecC
Q 002591 868 TMTLTAHEGLIAALAVSTE 886 (903)
Q Consensus 868 ~~~~~~h~~~V~sl~~spd 886 (903)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 4456667788888888873
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-12 Score=150.72 Aligned_cols=249 Identities=19% Similarity=0.269 Sum_probs=174.4
Q ss_pred EECCCCceeEEeccCCCCeEEEEECCCC-CEEEEEeCCCcEEEEeCCCCC------ceeEEeccCCCceEEEEecCCCCe
Q 002591 650 WHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDD 722 (903)
Q Consensus 650 Wd~~t~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~IWDl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ 722 (903)
|+. .|..+..+..|...|..++.++.. .+|++||.||+|++|++..-. .+..++......+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 654 578889999999999999998766 899999999999999987411 223344445678899999888775
Q ss_pred EEEEEeCCCcEEEEEcCCCe-------eeEEee----cCceeE-EEecC-CC-EEEEEEcCCeEEEEECCCCeEEEEecC
Q 002591 723 LICSCDGDGEIRYWSINNGS-------CTRVFK----GGTAQM-RFQPH-LG-RYLAAAAENVVSILDAETQACRLSLQG 788 (903)
Q Consensus 723 ll~sgs~Dg~I~iwDi~t~~-------~~~~~~----~~~~~v-~~sp~-~~-~ll~~s~dg~I~i~D~~t~~~~~~l~~ 788 (903)
+. .++.||.|++.+++... +.+..+ +.+..+ ++... .. .++++...+.|..||+++......++.
T Consensus 1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 55 67999999999987622 111111 111111 12222 23 567777789999999998876665543
Q ss_pred --CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe-ecCCCceEEEEEeCCCC---EEEEEE--CCCeEE
Q 002591 789 --HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYP---SLLVIG--CYQSLE 859 (903)
Q Consensus 789 --h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~-~~~~~~i~si~~sp~g~---~l~t~s--~dg~I~ 859 (903)
..+.|++++.+|.+.++++|+.. .+.+||++-+ ..+..+ ..+...+..+..+|-.+ ..++++ ..+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 45789999999999999999888 9999999865 233222 23346777777776543 444444 457999
Q ss_pred EEECCCCcEE-EEccC-------------------CCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 860 LWNMSENKTM-TLTAH-------------------EGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 860 vwdl~~~~~~-~~~~h-------------------~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+|++.++.+. .+... .-....+++..-+.++++|+.|..|+.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 9999988654 22111 11223344455567899999999999998
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.3e-11 Score=133.12 Aligned_cols=253 Identities=16% Similarity=0.173 Sum_probs=167.4
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeC-CCcEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVR 690 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~ 690 (903)
+.+.+..+......-..+.|++||+++++++.||.|.++|+.+.+.+.+++.... ..++++++||+++++++. ++.|.
T Consensus 25 t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~ 103 (369)
T PF02239_consen 25 TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVS 103 (369)
T ss_dssp T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEE
T ss_pred CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCcee
Confidence 6677888886655555678999999999999999999999999999999976554 688999999999988864 89999
Q ss_pred EEeCCCCCceeEEecc-------CCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeee--EEeec--CceeEEEecC
Q 002591 691 VWDADNPGYSLRTFMG-------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT--RVFKG--GTAQMRFQPH 759 (903)
Q Consensus 691 IWDl~~~~~~~~~~~~-------h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~--~~~~~--~~~~v~~sp~ 759 (903)
|+|.++ .+.++.+.. ....+..|..++....++++--+.+.|.+.|....+.+ ..++. ......|+|+
T Consensus 104 v~D~~t-le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 104 VIDAET-LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPD 182 (369)
T ss_dssp EEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TT
T ss_pred Eecccc-ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcc
Confidence 999988 556665542 23467778778887766656555688888887765433 23322 3456778888
Q ss_pred CCEEEEEEc-CCeEEEEECCCCeEEEEec---------------------------------------------------
Q 002591 760 LGRYLAAAA-ENVVSILDAETQACRLSLQ--------------------------------------------------- 787 (903)
Q Consensus 760 ~~~ll~~s~-dg~I~i~D~~t~~~~~~l~--------------------------------------------------- 787 (903)
+.+++++.. ++.|.++|.++++.+..+.
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv 262 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV 262 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE
T ss_pred cceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEE
Confidence 888777543 5678888877765554321
Q ss_pred ----CCCCCeEEEEEcCCCCEEEEE---eCC--eEEEEECCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEECCC-
Q 002591 788 ----GHTKPIDSVCWDPSGELLASV---SED--SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQ- 856 (903)
Q Consensus 788 ----~h~~~V~sl~~spdg~~lasg---s~d--~I~iwdl~s~~~~~~i~~~~~-~~~~i~si~~sp~g~~l~t~s~dg- 856 (903)
....+ ..+..+|+++++.+. +.+ .|.++|..+. +.+..+.. ....+..+.|+++|+++.++..++
T Consensus 263 ~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl---~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 263 KTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL---KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp EEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT---EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred EEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc---ceeEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 11111 335678999998888 444 8999999876 44444432 233588999999999988776653
Q ss_pred -eEEEEECCCCcEEE
Q 002591 857 -SLELWNMSENKTMT 870 (903)
Q Consensus 857 -~I~vwdl~~~~~~~ 870 (903)
.|.+||..+.+++.
T Consensus 339 ~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 339 GAIVVYDAKTLKEKK 353 (369)
T ss_dssp TEEEEEETTTTEEEE
T ss_pred CEEEEEECCCcEEEE
Confidence 69999999999883
|
... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-10 Score=128.38 Aligned_cols=266 Identities=16% Similarity=0.167 Sum_probs=179.3
Q ss_pred EEEEeCC----CcEEEEEC--CCCceeEEe-ccCCCCeEEEEECCCCCEEEEEeC----CCcEEEEeCCCC-Cc--eeEE
Q 002591 638 LATGGHD----KKAVLWHT--DTLKSKTNL-EEHSSLITDVRFSPSMPRLATSSF----DKTVRVWDADNP-GY--SLRT 703 (903)
Q Consensus 638 Latgs~D----g~V~vWd~--~t~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~----Dg~I~IWDl~~~-~~--~~~~ 703 (903)
+++|+++ +.|.+|++ ++++....- .........|++++++++|+++.. ++.|..|++... +. .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 5566666 68999888 344432221 123455678999999999999877 578999998864 22 2223
Q ss_pred eccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCC-CeeeEE---e-------------ecCceeEEEecCCCEEEEE
Q 002591 704 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---F-------------KGGTAQMRFQPHLGRYLAA 766 (903)
Q Consensus 704 ~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t-~~~~~~---~-------------~~~~~~v~~sp~~~~ll~~ 766 (903)
..........++++|+++.++++...+|.|.++++.. +..... + ..+...+.++|++++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3323445567999999998888878899999999987 443322 2 1245678999999998887
Q ss_pred Ec-CCeEEEEECCCCe--E--EEEec-CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC-CCcceEEEeecC----
Q 002591 767 AA-ENVVSILDAETQA--C--RLSLQ-GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG-SEGECVHELSCN---- 833 (903)
Q Consensus 767 s~-dg~I~i~D~~t~~--~--~~~l~-~h~~~V~sl~~spdg~~lasgs~d--~I~iwdl~s~-~~~~~i~~~~~~---- 833 (903)
.. .+.|.+|++.... . ...+. .....-+.++|+|+++++++.++. .|.+|++... .....+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 65 4689999987654 3 22222 234557889999999988777765 8999998822 122233332221
Q ss_pred --CCceEEEEEeCCCCEEEEEECC-CeEEEEECC--CCcEE---EEccCCCCEEEEEEecCCCEEEEEe-cCCcEEEcC
Q 002591 834 --GNKFHSCVFHPTYPSLLVIGCY-QSLELWNMS--ENKTM---TLTAHEGLIAALAVSTETGYVASAS-HDKFVKLWK 903 (903)
Q Consensus 834 --~~~i~si~~sp~g~~l~t~s~d-g~I~vwdl~--~~~~~---~~~~h~~~V~sl~~spdg~~LaSgs-~DG~I~IWd 903 (903)
......++++|+|++|+++... +.|.+|++. ++++. .+.......+.++++|+|++|++++ .++.|.+|+
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1257889999999999988754 689999993 34443 3333455689999999999998887 566888874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-11 Score=143.43 Aligned_cols=220 Identities=18% Similarity=0.242 Sum_probs=152.3
Q ss_pred eeEeecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEE-EeCCC--cE
Q 002591 616 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDK--TV 689 (903)
Q Consensus 616 ~~~l~~H~~~V~~l~fspdg~~Latgs~D---g~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg--~I 689 (903)
...+..|...|.+.+|+|||+.|+..+.+ ..|++||+.+++.. .+..+.+.+.+++|+|||+.|+. .+.+| .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 34556678889999999999999987744 36999999877653 33444555668999999997754 45555 59
Q ss_pred EEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCc--EEEEEcCCCeeeEEe-ec-CceeEEEecCCCEEEE
Q 002591 690 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVF-KG-GTAQMRFQPHLGRYLA 765 (903)
Q Consensus 690 ~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~--I~iwDi~t~~~~~~~-~~-~~~~v~~sp~~~~ll~ 765 (903)
++||+.+ +. ++.+..+......++|+|++..++++...+|. |+++|+.+++..+.. .+ ......|+|+++.++.
T Consensus 275 y~~d~~~-g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~ 352 (433)
T PRK04922 275 YVMDLGS-RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAM 352 (433)
T ss_pred EEEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEE
Confidence 9999986 33 45566666666789999999988877666665 666777776654432 22 2345799999999888
Q ss_pred EEcCC---eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceE
Q 002591 766 AAAEN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFH 838 (903)
Q Consensus 766 ~s~dg---~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~ 838 (903)
...++ .|.+||+.+++.. .+. +......+.|+|||++|+..+.+ .|.++++... ....+..+...+.
T Consensus 353 ~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~~ 426 (433)
T PRK04922 353 VHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEVR 426 (433)
T ss_pred EECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCCC
Confidence 76543 6999999888765 333 33345577999999977766543 5778887432 2333333344555
Q ss_pred EEEEeC
Q 002591 839 SCVFHP 844 (903)
Q Consensus 839 si~~sp 844 (903)
..+|+|
T Consensus 427 ~p~wsp 432 (433)
T PRK04922 427 EPAWSP 432 (433)
T ss_pred CCccCC
Confidence 666665
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.1e-12 Score=145.19 Aligned_cols=221 Identities=19% Similarity=0.250 Sum_probs=151.2
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEE-EEeCCCcEEEE
Q 002591 617 NSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVW 692 (903)
Q Consensus 617 ~~l~~H~~~V~~l~fspdg~~Latgs~D---g~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg~I~IW 692 (903)
..+..+...|.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+ +.+.+|...||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 3455678889999999999999887753 359999998876543 444445677899999999886 45778887777
Q ss_pred eCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEc--CCCeeeEE-eec-CceeEEEecCCCEEEEEEc
Q 002591 693 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI--NNGSCTRV-FKG-GTAQMRFQPHLGRYLAAAA 768 (903)
Q Consensus 693 Dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi--~t~~~~~~-~~~-~~~~v~~sp~~~~ll~~s~ 768 (903)
.++..+...+.+..+...+....|+|++..+++++..+|...||.+ .+++..+. +.+ ......|+|+++.++.++.
T Consensus 268 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 268 TVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred EEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 6543334456666666667788999999988877666677666655 44443332 222 2345789999999988776
Q ss_pred CC---eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEE
Q 002591 769 EN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCV 841 (903)
Q Consensus 769 dg---~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~si~ 841 (903)
++ .|.+||+.+++...... ......+.|+|||++|+..+.+ .+.+.++. + .....+..+.+.+...+
T Consensus 348 ~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~ 421 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPS 421 (427)
T ss_pred cCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCc
Confidence 54 69999999887554332 2344678999999987776644 35565653 2 22333333445566667
Q ss_pred EeC
Q 002591 842 FHP 844 (903)
Q Consensus 842 ~sp 844 (903)
|+|
T Consensus 422 wsp 424 (427)
T PRK02889 422 WGP 424 (427)
T ss_pred cCC
Confidence 765
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-11 Score=126.39 Aligned_cols=229 Identities=13% Similarity=0.202 Sum_probs=164.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCce-eEEeccCCCceEEEEecCCCCeEEEEEeCC------CcEEEEEcC
Q 002591 667 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSIN 739 (903)
Q Consensus 667 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~-~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D------g~I~iwDi~ 739 (903)
....++|+-|...+++|..+| .+||+++--++. .+.+....-.+..+-|- .+.+.++|+.+ ..|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 355699999999999998777 899999752221 12222222334444443 34455566544 579999977
Q ss_pred CCeeeEEe--ecCceeEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEecCC--CCCeEEEEEcCCCCEEEEEeCC--e
Q 002591 740 NGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQGH--TKPIDSVCWDPSGELLASVSED--S 812 (903)
Q Consensus 740 t~~~~~~~--~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~-t~~~~~~l~~h--~~~V~sl~~spdg~~lasgs~d--~ 812 (903)
..+++..+ ...+..+++.++ .++...++.|+||... ..+.++.+..- ...+.+++-..+..+||.-+.. .
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 77777654 467777887765 4555678899999887 44666555532 3334444433344477766655 8
Q ss_pred EEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCC-eEEEEECCCCcEE-EEc--cCCCCEEEEEEecCCC
Q 002591 813 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLT--AHEGLIAALAVSTETG 888 (903)
Q Consensus 813 I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg-~I~vwdl~~~~~~-~~~--~h~~~V~sl~~spdg~ 888 (903)
|.|-|+...... .-..+..|...|.+++.+-+|..+++++..| -|+|||..+|+.+ ++. .....|.+++|+|+..
T Consensus 161 vQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999865332 3466788999999999999999999999999 5899999999988 443 3456899999999999
Q ss_pred EEEEEecCCcEEEc
Q 002591 889 YVASASHDKFVKLW 902 (903)
Q Consensus 889 ~LaSgs~DG~I~IW 902 (903)
+||++|+.|+|+||
T Consensus 240 ~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999999997
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.6e-13 Score=144.04 Aligned_cols=249 Identities=20% Similarity=0.279 Sum_probs=190.0
Q ss_pred CceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCC-CCeEEEEEeCCCcE
Q 002591 655 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEI 733 (903)
Q Consensus 655 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I 733 (903)
......|..|.+.|..|.|+..|..|++|+.|..|.+||.......+....+|...|.-..|.|. +..-+++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 34556788999999999999999999999999999999999866667777899999998889886 34456799999999
Q ss_pred EEEEcCCCe------eeEEeecCceeEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEe---cCCCC---CeEEEEEcC
Q 002591 734 RYWSINNGS------CTRVFKGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSL---QGHTK---PIDSVCWDP 800 (903)
Q Consensus 734 ~iwDi~t~~------~~~~~~~~~~~v~~sp~~-~~ll~~s~dg~I~i~D~~t~~~~~~l---~~h~~---~V~sl~~sp 800 (903)
++=.+.... ++....+++..++..|.. ..|++++.|+.+.-+|++.......+ +.+.. ....|+.+|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 998765332 334456788888888887 45788889999999999987543332 23333 467889999
Q ss_pred CCC-EEEEEeCC-eEEEEECCCCCCc---ceEEEe------ecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCc--
Q 002591 801 SGE-LLASVSED-SVRVWTVGSGSEG---ECVHEL------SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-- 867 (903)
Q Consensus 801 dg~-~lasgs~d-~I~iwdl~s~~~~---~~i~~~------~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~-- 867 (903)
... .+++++.| .+++||.+...+. ..+..+ ......|++++|+.++.-|++.-.|..|++|.-.-+.
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 665 88888888 9999999865321 111111 1234568999999999889999999999999543221
Q ss_pred ----------EE--EEccCCC--CEEEEEE-ecCCCEEEEEecCCcEEEcC
Q 002591 868 ----------TM--TLTAHEG--LIAALAV-STETGYVASASHDKFVKLWK 903 (903)
Q Consensus 868 ----------~~--~~~~h~~--~V~sl~~-spdg~~LaSgs~DG~I~IWd 903 (903)
.+ .+++|.. .|.++-| -|...|+++||+-|.|.|||
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 11 3667754 4777755 57889999999999999997
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.9e-12 Score=133.88 Aligned_cols=235 Identities=16% Similarity=0.176 Sum_probs=178.1
Q ss_pred CCCCeEEEEECCCCC--EEEEEeCCCcEEEEeCCCCCce-----eEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEE
Q 002591 664 HSSLITDVRFSPSMP--RLATSSFDKTVRVWDADNPGYS-----LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 736 (903)
Q Consensus 664 h~~~V~~l~fspdg~--~Lasgs~Dg~I~IWDl~~~~~~-----~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iw 736 (903)
....|..++|.-++. .|+.++.|..+.++++...... +.........|..++... . .|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d--g-~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD--G-TLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC--C-EEEEEecCCcEEEE
Confidence 445677888876654 4555546777777777653221 123445567777777652 2 45589999999999
Q ss_pred EcCCCe-----eeEEee-cCceeEEEecCCCEEEE-EEcC--CeEEEEECCCCeEEEEecCC---------CCCeEEEEE
Q 002591 737 SINNGS-----CTRVFK-GGTAQMRFQPHLGRYLA-AAAE--NVVSILDAETQACRLSLQGH---------TKPIDSVCW 798 (903)
Q Consensus 737 Di~t~~-----~~~~~~-~~~~~v~~sp~~~~ll~-~s~d--g~I~i~D~~t~~~~~~l~~h---------~~~V~sl~~ 798 (903)
.++.+. .+..-. .+...+.-++....|++ |+.+ +.+.|||++..+.+..-+.- .-+++++.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 998432 222222 34555666666666666 6667 78999999998776654432 235778899
Q ss_pred cCC--CCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE--EEcc
Q 002591 799 DPS--GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTA 873 (903)
Q Consensus 799 spd--g~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~--~~~~ 873 (903)
.+. ...|++++.- .|++||.+.+. +.+..+...++.++++...|++++|+++...+.+..||++.++.. .+.+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 987 6788888877 99999998653 566677777899999999999999999999999999999999988 4788
Q ss_pred CCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 874 HEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 874 h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
..+.|++|..+|...+|++|+-|..|||+|
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 999999999999999999999999999997
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-12 Score=138.86 Aligned_cols=237 Identities=17% Similarity=0.217 Sum_probs=171.3
Q ss_pred cCCCCeEEEEECCCCCEE-EEEeCCCcEEEEeCCCCCceeEEeccCC-CceEEEEecCCCCeEEEEEeCCCcEEEEEcCC
Q 002591 663 EHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 740 (903)
Q Consensus 663 ~h~~~V~~l~fspdg~~L-asgs~Dg~I~IWDl~~~~~~~~~~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t 740 (903)
.|....+.|..+|||.|| ++|.+--.|++||+.+- ...|..|. ..|..+....+.-.-+|.-..|.+|.+..--.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL---SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL---SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccc---eeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 477888999999999975 66667889999999862 22333332 33333333222111122334477776654332
Q ss_pred CeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 002591 741 GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 819 (903)
Q Consensus 741 ~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~ 819 (903)
......+......++++.....+++++....|+-++++.|..+..+....+.+++|..++...+|++|+.+ .|..||.+
T Consensus 126 ~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 22223334445667777777778888888999999999999999998888999999999999999999988 99999999
Q ss_pred CCCCcceEEE---eecCCC-----ceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEEEEccCCC--CEEEEEEecC--C
Q 002591 820 SGSEGECVHE---LSCNGN-----KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG--LIAALAVSTE--T 887 (903)
Q Consensus 820 s~~~~~~i~~---~~~~~~-----~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~~h~~--~V~sl~~spd--g 887 (903)
+......+.. +..+.+ .|+++.|+.+|-.+++|+.+|.|.|||++..+.+.+..|.. +|..+.|.+. .
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 8754333322 122222 38999999999999999999999999999999998877754 7888899665 3
Q ss_pred CEEEEEecCCcEEEcC
Q 002591 888 GYVASASHDKFVKLWK 903 (903)
Q Consensus 888 ~~LaSgs~DG~I~IWd 903 (903)
..|+|. +...++|||
T Consensus 286 ~~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 286 NKVVSM-DKRILKIWD 300 (703)
T ss_pred ceEEec-chHHhhhcc
Confidence 455554 456789996
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.8e-11 Score=128.96 Aligned_cols=272 Identities=16% Similarity=0.216 Sum_probs=194.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEECCCCceeEEeccCCCC--eE-EEEECCCCCEEEEEe
Q 002591 623 TSKVICCHFSSDGKLLATGGHDK---------------KAVLWHTDTLKSKTNLEEHSSL--IT-DVRFSPSMPRLATSS 684 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg---------------~V~vWd~~t~~~~~~l~~h~~~--V~-~l~fspdg~~Lasgs 684 (903)
...|..+.|+|.++||.+-+... .++|||+.++..+..+..-..+ .+ -+.|+-+.+++|--
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv- 149 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV- 149 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-
Confidence 34599999999999999966433 4999999999999999877666 66 78899888876554
Q ss_pred CCCcEEEEeCCCCCceeEEeccC-CCceEEEEecCCCCe-EEEE-----EeCCCcEEEEEcCCCeeeEE---eecCceeE
Q 002591 685 FDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDD-LICS-----CDGDGEIRYWSINNGSCTRV---FKGGTAQM 754 (903)
Q Consensus 685 ~Dg~I~IWDl~~~~~~~~~~~~h-~~~V~sl~fsp~~~~-ll~s-----gs~Dg~I~iwDi~t~~~~~~---~~~~~~~v 754 (903)
....+.|+++ ++......+..- ...|....|+|.+++ .||. ...++.++||.+..++.+.. ++.....+
T Consensus 150 v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL 228 (561)
T COG5354 150 VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL 228 (561)
T ss_pred ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE
Confidence 2445999997 322222112111 356888889987432 2232 45688999999987765543 34556678
Q ss_pred EEecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe--CC-eEEEEECCC
Q 002591 755 RFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGS 820 (903)
Q Consensus 755 ~~sp~~~~ll~~s~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs--~d-~I~iwdl~s 820 (903)
.|.+.+.++++-.. +..++|+++....+.... .-.++|...+|.|.++.+++.+ .. .+.++|++.
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeeccccc
Confidence 89999987766422 357889998866555444 5679999999999988666554 44 899999975
Q ss_pred CCCcceEEEeecCCCceEEEEEeCCCCEEEEEECC---CeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEe---
Q 002591 821 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS--- 894 (903)
Q Consensus 821 ~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~d---g~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs--- 894 (903)
. ....+ ....-..+.|+|.++++++++.+ |.|.+||......+.-.-......-+.|+||+.++.+..
T Consensus 308 N----l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 308 N----LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSE 381 (561)
T ss_pred c----eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCc
Confidence 3 22222 24455677899999999999887 589999988776653222333455678999999887764
Q ss_pred ---cCCcEEEcC
Q 002591 895 ---HDKFVKLWK 903 (903)
Q Consensus 895 ---~DG~I~IWd 903 (903)
.|..|+||+
T Consensus 382 k~~~Dn~i~l~~ 393 (561)
T COG5354 382 KLRVDNSIKLWD 393 (561)
T ss_pred ccccCcceEEEE
Confidence 477899986
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.4e-12 Score=131.37 Aligned_cols=249 Identities=17% Similarity=0.279 Sum_probs=189.8
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCceeEEec-cCCCCeEEEEECCCCCEEEEEeCCCcE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTV 689 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~-~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I 689 (903)
.+..+..++||.+.|++...-|...-+++.+.|.+|+||-- +.++.-..+. .-..+++++.+.++...|++|-..|++
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 55567789999999999999998888999999999999963 3454444443 345789999999999999999999999
Q ss_pred EEEeCCCC---CceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceeEEEecCCCEEE
Q 002591 690 RVWDADNP---GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYL 764 (903)
Q Consensus 690 ~IWDl~~~---~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~--~~~~~v~~sp~~~~ll 764 (903)
.-+.+... ....+.+..|...|..+-|+.... .+++++.|..+.---.+.+..+..+. .......+.-. +.+
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAF 169 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEE
Confidence 99977542 334567778999999999987654 55588888777655555555443322 22222222221 455
Q ss_pred EEEcCCeEEEE--ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEE
Q 002591 765 AAAAENVVSIL--DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 841 (903)
Q Consensus 765 ~~s~dg~I~i~--D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~ 841 (903)
++...|.|.+. +...-..+.++.+|...+.+++|.+...++++|..| .+.+||+.-. .....++.+|...|..+.
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~--~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR--KGTAYELQGHNDKVQALS 247 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC--cceeeeeccchhhhhhhh
Confidence 55556666554 344557888999999999999999999999999999 9999999654 245667778888888888
Q ss_pred EeCCCCEEEEEECCCeEEEEECCC
Q 002591 842 FHPTYPSLLVIGCYQSLELWNMSE 865 (903)
Q Consensus 842 ~sp~g~~l~t~s~dg~I~vwdl~~ 865 (903)
.-+--+.+++++.||.|.+|+++.
T Consensus 248 ~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 248 YAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhheeeeeccCCCeEEEEeccc
Confidence 888888999999999999999975
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-11 Score=133.84 Aligned_cols=167 Identities=15% Similarity=0.244 Sum_probs=129.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEec----cCCCCeEEEEECCCCC-EEEEEeCCCcEEEEeCCCCC---------
Q 002591 633 SDGKLLATGGHDKKAVLWHTDTLKSKTNLE----EHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPG--------- 698 (903)
Q Consensus 633 pdg~~Latgs~Dg~V~vWd~~t~~~~~~l~----~h~~~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~~~~--------- 698 (903)
+++--|+.|-..|.|.+.|....+..+.+. -....|+||.|-|.+. .++++-.+|.+++||.....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 455567778888889988865422222111 2347899999998765 55666679999999764210
Q ss_pred ------------------ceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeE---EeecCceeEEEe
Q 002591 699 ------------------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VFKGGTAQMRFQ 757 (903)
Q Consensus 699 ------------------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~---~~~~~~~~v~~s 757 (903)
.++..+.-..+.|..++|+||+. +||+.+.||.+||||..+.+++. .+-++..+++|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 01122222345789999999877 55689999999999999887654 456789999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcC
Q 002591 758 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 800 (903)
Q Consensus 758 p~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp 800 (903)
||+++|++++.|..|.||.+...+.+..-.+|+++|..|+|+|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999999997
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.7e-11 Score=137.73 Aligned_cols=230 Identities=20% Similarity=0.230 Sum_probs=158.2
Q ss_pred CcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCceeEEeccCCCceEEEEecCCCC
Q 002591 645 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 721 (903)
Q Consensus 645 g~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 721 (903)
..|.++|.+. ...+.+..+...+...+|+|||++|+.++.+ ..|++||+.+ +.. ..+..+...+.+++|+|++.
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-g~~-~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-GQR-EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCC-CCE-EEeecCCCCccceEECCCCC
Confidence 4578888753 4455566677789999999999999888754 4799999987 332 33344556677899999999
Q ss_pred eEEEEEeCCC--cEEEEEcCCCeeeEEee--cCceeEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCeE
Q 002591 722 DLICSCDGDG--EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPID 794 (903)
Q Consensus 722 ~ll~sgs~Dg--~I~iwDi~t~~~~~~~~--~~~~~v~~sp~~~~ll~~s~d-g--~I~i~D~~t~~~~~~l~~h~~~V~ 794 (903)
.++++.+.++ .|++||+.++....... .......|++++..++.++.. + .|+++|+.+++.. .+..+...+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 8887776655 58889998876544332 223457899999988877653 2 6888898877644 3333556677
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCC---eEEEEECCCCc
Q 002591 795 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 867 (903)
Q Consensus 795 sl~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg---~I~vwdl~~~~ 867 (903)
.+.|+|+|++|+.++.+ .|.+||+.++.. ..+.. ........|+|++++|+..+.++ .+++++.....
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~----~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE----RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 88999999988777654 688899876421 12221 12234568999999998887764 56677765554
Q ss_pred EEEEccCCCCEEEEEE
Q 002591 868 TMTLTAHEGLIAALAV 883 (903)
Q Consensus 868 ~~~~~~h~~~V~sl~~ 883 (903)
...+..+.+.+..++|
T Consensus 401 ~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 401 RARLPLGNGDVREPAW 416 (417)
T ss_pred eeECCCCCCCcCCCCC
Confidence 4445444555555554
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-13 Score=145.30 Aligned_cols=227 Identities=15% Similarity=0.181 Sum_probs=183.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeE
Q 002591 666 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 745 (903)
Q Consensus 666 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~ 745 (903)
..-..+.|+.+|+.|+.|+..|.|..+|..+ ......+. -...|.++.|..+.. +||+ .....++|||-. |..++
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t-~~L~~Ei~-v~Etv~Dv~~LHneq-~~AV-AQK~y~yvYD~~-GtElH 204 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT-KKLHFEIN-VMETVRDVTFLHNEQ-FFAV-AQKKYVYVYDNN-GTELH 204 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccc-ceeeeeee-hhhhhhhhhhhcchH-HHHh-hhhceEEEecCC-CcEEe
Confidence 3456789999999999999999999999998 44444443 456789999987644 5534 447889999955 55555
Q ss_pred Eee--cCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002591 746 VFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 822 (903)
Q Consensus 746 ~~~--~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~ 822 (903)
.++ ..+..+.|.|..-.|++++..|.+..-|+.+|+.+..+....+.+..++-+|-.-++-+|..+ +|.+|...+.
T Consensus 205 Clk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk- 283 (545)
T KOG1272|consen 205 CLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK- 283 (545)
T ss_pred ehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc-
Confidence 554 356778899998888888889999999999999999999888999999999988888888777 9999998765
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEE
Q 002591 823 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 901 (903)
Q Consensus 823 ~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~I 901 (903)
..+..+-+|.++|.++++.++|.|+++++.|..|+|||++....+ ++.. ......++||..| ++.++....|.|
T Consensus 284 --ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~i 358 (545)
T KOG1272|consen 284 --EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQI 358 (545)
T ss_pred --chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeee
Confidence 667777889999999999999999999999999999999987755 3333 5567788887655 444555667888
Q ss_pred cC
Q 002591 902 WK 903 (903)
Q Consensus 902 Wd 903 (903)
|+
T Consensus 359 w~ 360 (545)
T KOG1272|consen 359 WK 360 (545)
T ss_pred eh
Confidence 85
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-12 Score=127.87 Aligned_cols=203 Identities=19% Similarity=0.250 Sum_probs=149.1
Q ss_pred eeeeEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--------------e-----------------
Q 002591 614 KEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--------------L----------------- 661 (903)
Q Consensus 614 ~~~~~l~-~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~--------------l----------------- 661 (903)
+.+..++ .|...|+.+.--|+ ..|.+=+.|+++.+|++.-...+.. +
T Consensus 46 r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rg 124 (323)
T KOG0322|consen 46 RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRG 124 (323)
T ss_pred ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcc
Confidence 3444455 56667777777776 4566677788888887653111100 0
Q ss_pred ----------------------ccCCCCeEEEEECC-CCC--EEEEEeCCCcEEEEeCCCCCc---------eeEEeccC
Q 002591 662 ----------------------EEHSSLITDVRFSP-SMP--RLATSSFDKTVRVWDADNPGY---------SLRTFMGH 707 (903)
Q Consensus 662 ----------------------~~h~~~V~~l~fsp-dg~--~Lasgs~Dg~I~IWDl~~~~~---------~~~~~~~h 707 (903)
....+.|.|..|.. +++ +|++|-.+|.|.+||+.+..+ .......|
T Consensus 125 sde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash 204 (323)
T KOG0322|consen 125 SDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASH 204 (323)
T ss_pred cchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhc
Confidence 01234566666533 233 456777799999999987422 23344579
Q ss_pred CCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCC--e-----eeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCC
Q 002591 708 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--S-----CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ 780 (903)
Q Consensus 708 ~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~--~-----~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~ 780 (903)
..+|.++.|.+.-..=+ +++.+..+..|++... . .+..-..++..+++-|+++.+++++.|+.|+||..++.
T Consensus 205 ~qpvlsldyas~~~rGi-sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 205 KQPVLSLDYASSCDRGI-SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred cCcceeeeechhhcCCc-CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC
Confidence 99999999987544334 7777888889988643 2 22222357888999999999999999999999999999
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002591 781 ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 818 (903)
Q Consensus 781 ~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl 818 (903)
.++..++-|...|.+++|+|+..++|+++.| .|.+|++
T Consensus 284 ~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999 9999986
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.4e-11 Score=138.59 Aligned_cols=202 Identities=16% Similarity=0.213 Sum_probs=145.4
Q ss_pred CcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeC--CCcEEEEEcCCCeeeE--EeecCceeEEEecCCCE
Q 002591 687 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTR--VFKGGTAQMRFQPHLGR 762 (903)
Q Consensus 687 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~--Dg~I~iwDi~t~~~~~--~~~~~~~~v~~sp~~~~ 762 (903)
..|.+||.+ +...+.+..|...+.+.+|+|++..++++... +..|++||+.+++... .+.+......|+|++..
T Consensus 182 ~~l~~~d~d--g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD--GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC--CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence 368888875 44556677788899999999999877765532 4689999999887543 34455667899999998
Q ss_pred EEEEE-cCC--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCC
Q 002591 763 YLAAA-AEN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGN 835 (903)
Q Consensus 763 ll~~s-~dg--~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~ 835 (903)
++... .++ .|++||++++... .+..+.......+|+|||+.|+..+.. .|++||+..+. ...+.....
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~~~~ 334 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRISFGGG 334 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEeecCCC
Confidence 76554 344 5888899887654 355566667789999999988776643 68888876542 222222344
Q ss_pred ceEEEEEeCCCCEEEEEECCC---eEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecC
Q 002591 836 KFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 896 (903)
Q Consensus 836 ~i~si~~sp~g~~l~t~s~dg---~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~D 896 (903)
.+....|+|+|++|+....++ .|.+||+.++....+. ....+..+.|+|||++|+..+.+
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence 566788999999998877542 6889998766554333 23457789999999988776543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=142.84 Aligned_cols=219 Identities=17% Similarity=0.247 Sum_probs=147.8
Q ss_pred ceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCC-CCeEEEEEeCCCcEE
Q 002591 656 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIR 734 (903)
Q Consensus 656 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~ 734 (903)
.....+.+|.+.|+|+.|+.+|.+|++|+.|-.|.|||.-..+.....-++|...|.++.|-|. ++.++++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 4456788999999999999999999999999999999998633334455699999999999986 566888999999999
Q ss_pred EEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-e
Q 002591 735 YWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-S 812 (903)
Q Consensus 735 iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg-~~lasgs~d-~ 812 (903)
++|+...+.-..-.+ -......+..|...|..|+-.|++ ..|.++++| +
T Consensus 121 lfdl~~~~~~~~d~~-----------------------------~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt 171 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHG-----------------------------MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT 171 (758)
T ss_pred EEecccccccccccC-----------------------------ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc
Confidence 999986432111000 011222334577778888888877 577788888 8
Q ss_pred EEEEECCCCCCcc----e---EEEeecCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCC--------Cc---------
Q 002591 813 VRVWTVGSGSEGE----C---VHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSE--------NK--------- 867 (903)
Q Consensus 813 I~iwdl~s~~~~~----~---i~~~~~~~~~i~si~~sp~g-~~l~t~s~dg~I~vwdl~~--------~~--------- 867 (903)
|+-||++...... + +..+...--...++.++|.. .+|++|+.|-..++||.+. ++
T Consensus 172 irQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~ 251 (758)
T KOG1310|consen 172 IRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDC 251 (758)
T ss_pred eeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCccc
Confidence 8888887532110 1 01111112345678888865 4678888888999999431 11
Q ss_pred -EE--EEccCC--------C---CEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 868 -TM--TLTAHE--------G---LIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 868 -~~--~~~~h~--------~---~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
++ ...+|. . .++-+.|+|+|.-|+..-....|++||
T Consensus 252 ~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfd 301 (758)
T KOG1310|consen 252 RCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFD 301 (758)
T ss_pred chhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEe
Confidence 11 111232 1 245678899987555443344577664
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-11 Score=127.72 Aligned_cols=226 Identities=18% Similarity=0.257 Sum_probs=143.3
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 002591 619 VRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 697 (903)
Q Consensus 619 l~~H~~~V~~l~fspdg~~Latgs~-Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~ 697 (903)
..+| ..|+++.|.+||..|++++. |..|.|||.+++..+.......+.++-+.|+||+.+|+++..|+..++|.....
T Consensus 192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~ 270 (445)
T KOG2139|consen 192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS 270 (445)
T ss_pred CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccc
Confidence 3455 78999999999999999985 567999999998877777666778999999999999999999999999976652
Q ss_pred CceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEEC
Q 002591 698 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDA 777 (903)
Q Consensus 698 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~ 777 (903)
..+.+ ..-..+.|...+|+|+|..+|++++.. -++|.+.-...-..+.. .++......+-|+
T Consensus 271 wt~er-w~lgsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~---------------~~~~k~~lliaDL 332 (445)
T KOG2139|consen 271 WTKER-WILGSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLR---------------PQSIKRVLLIADL 332 (445)
T ss_pred ceecc-eeccCCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccC---------------cccceeeeeeccc
Confidence 33333 333455999999999999999888754 44444322111111110 1111112222333
Q ss_pred CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---------eEEEEECCCCCCcceEEEeecCCCceEEEEEeC---C
Q 002591 778 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP---T 845 (903)
Q Consensus 778 ~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d---------~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp---~ 845 (903)
..-....--+--.+++.+++|+|.|.+||+.-.+ .|.+||.+..........-...+.....+.|+| +
T Consensus 333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~ 412 (445)
T KOG2139|consen 333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNE 412 (445)
T ss_pred hhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccC
Confidence 2111100001124678899999999999987554 256677765422222211111122244455555 4
Q ss_pred CCEEEEEECCCeEEEEEC
Q 002591 846 YPSLLVIGCYQSLELWNM 863 (903)
Q Consensus 846 g~~l~t~s~dg~I~vwdl 863 (903)
+..|.++-+.|.|.-|++
T Consensus 413 g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 413 GRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred CcEEEEEeccCceEeeee
Confidence 566666666777777664
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-10 Score=134.98 Aligned_cols=232 Identities=15% Similarity=0.095 Sum_probs=160.0
Q ss_pred cEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCe
Q 002591 646 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 722 (903)
Q Consensus 646 ~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ 722 (903)
.|.++|.+.. ....+..+...+...+|+|||+.|+..+.+ ..|.+||+.+ +.. ..+....+.+...+|+|+++.
T Consensus 180 ~l~~~d~~g~-~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~-g~~-~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGA-RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT-GRR-EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCC-CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-CCE-EEccCCCCCcCCeEECCCCCE
Confidence 4777787644 445666777889999999999999877653 3689999986 332 333334445567899999998
Q ss_pred EEEEEeCCC--cEEEEEcCCCeeeEEee--cCceeEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEecCCCCCeEE
Q 002591 723 LICSCDGDG--EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACRLSLQGHTKPIDS 795 (903)
Q Consensus 723 ll~sgs~Dg--~I~iwDi~t~~~~~~~~--~~~~~v~~sp~~~~ll~~s~d---g~I~i~D~~t~~~~~~l~~h~~~V~s 795 (903)
++++.+.+| .|++||+.+++...... .......|+|++..++..+.. ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776666 58888999887554332 234557899999988877652 368888988876543322 2233446
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECC---CeEEEEECCCCcE
Q 002591 796 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKT 868 (903)
Q Consensus 796 l~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~d---g~I~vwdl~~~~~ 868 (903)
..|+|+|++|+..+.+ .|.+||+.++.. ..+. . ........|+|+|+.|+..+.+ ..|+++++..+..
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt---~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILT---D-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEcc---C-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 7899999988776543 588999987632 2221 1 1122345899999999887765 3688888876666
Q ss_pred EEEccCCCCEEEEEEecC
Q 002591 869 MTLTAHEGLIAALAVSTE 886 (903)
Q Consensus 869 ~~~~~h~~~V~sl~~spd 886 (903)
..+..+.+.+...+|+|-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 566566677788888763
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-10 Score=133.78 Aligned_cols=231 Identities=15% Similarity=0.141 Sum_probs=155.4
Q ss_pred cEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCC-C--cEEEEeCCCCCceeEEeccCCCceEEEEecCCCCe
Q 002591 646 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-K--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 722 (903)
Q Consensus 646 ~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g--~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ 722 (903)
.|.++|.+... .+.+..+...+.+..|+|||+.|+..+.+ + .|++||+.+ +.. ..+...........|+|+++.
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t-g~~-~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT-QVR-EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCC-CCe-EEecCCCCCcCCeeECCCCCE
Confidence 57777865433 45566677889999999999998877543 3 588889876 332 223322334456899999998
Q ss_pred EEEEEeCCCc--EEEEEcCCCeeeEEeec--CceeEEEecCCCEEEEEEc-C--CeEEEEECCCCeEEEEecCCCCCeEE
Q 002591 723 LICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPIDS 795 (903)
Q Consensus 723 ll~sgs~Dg~--I~iwDi~t~~~~~~~~~--~~~~v~~sp~~~~ll~~s~-d--g~I~i~D~~t~~~~~~l~~h~~~V~s 795 (903)
++++.+.+|. |++||+.+++....... ......|+|++..++..+. + ..|+++|+.+++..... ........
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 8877777775 77888888765443322 3456889999998877765 2 36777888887654332 12233445
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCC---eEEEEECCCCcE
Q 002591 796 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKT 868 (903)
Q Consensus 796 l~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg---~I~vwdl~~~~~ 868 (903)
.+|+|||++|+..+.+ .|.++|+.++.. .. +... .......|+|+|+.|+....++ .|++++......
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~---lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QV---LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe-EE---ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 7899999987766543 466678776532 11 2111 1122447999999988876653 488888865555
Q ss_pred EEEccCCCCEEEEEEec
Q 002591 869 MTLTAHEGLIAALAVST 885 (903)
Q Consensus 869 ~~~~~h~~~V~sl~~sp 885 (903)
..+..+.+.+...+|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 56666667788888886
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=143.70 Aligned_cols=265 Identities=16% Similarity=0.212 Sum_probs=185.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEE-CC------CCCEEEEEeCCCcEEEEeC
Q 002591 622 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-SP------SMPRLATSSFDKTVRVWDA 694 (903)
Q Consensus 622 H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~f-sp------dg~~Lasgs~Dg~I~IWDl 694 (903)
|-+++++..+-. +||++|. --.|.+||+..+..+..+.... ++.+ .. .+.+++++..-+.+..=+.
T Consensus 6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~----~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~ 78 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSK----ILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEA 78 (967)
T ss_pred ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhc----ccccccccccceeccceEEEEEeecceeecch
Confidence 344566666554 4676654 4479999998876655443210 1111 11 2335555554443443332
Q ss_pred CCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCcee-------EEEecCCCEEEEEE
Q 002591 695 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-------MRFQPHLGRYLAAA 767 (903)
Q Consensus 695 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~-------v~~sp~~~~ll~~s 767 (903)
.. .....+ .+.|....+..+.. .++....+..+.+||...+...........+ +-++++.-++++++
T Consensus 79 ~~--~~~~~~---s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 79 SN--QIIERF---SDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred hh--hhhhhc---cccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecc
Confidence 21 112222 23333344444434 4456666889999999887766555443222 22445555677778
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 002591 768 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 846 (903)
Q Consensus 768 ~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g 846 (903)
.-+.|.+|+....+....+.+|++.|.++.|+.||.++++.++| ++++|++.+.+... ...-+|...+..++|+|+
T Consensus 153 v~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN- 229 (967)
T ss_pred ccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc-
Confidence 88999999998655555789999999999999999999999999 99999999875444 355678999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCcEEEEccCC-CCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 847 PSLLVIGCYQSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 847 ~~l~t~s~dg~I~vwdl~~~~~~~~~~h~-~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
++++++.|-+.++|+.+...+..+..|. ..|+.++..++.-.++|++.|+.|++|+
T Consensus 230 -~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred -eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 8999999999999987766666777775 5799999999999999999999999996
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-09 Score=120.52 Aligned_cols=256 Identities=10% Similarity=0.075 Sum_probs=167.7
Q ss_pred CcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeC----------CCcEEEEeCCCCCceeEEeccCC------
Q 002591 645 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMGHS------ 708 (903)
Q Consensus 645 g~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~I~IWDl~~~~~~~~~~~~h~------ 708 (903)
++|.|.|.++++.+.++..-..+-. + ++||++.|++++. +..|.+||+.+ .+.+..+.-..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-HLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-CcEEeEEccCCCchhhc
Confidence 7999999999999998875444333 4 9999998877755 78899999998 66666555321
Q ss_pred -CceEEEEecCCCCeEEEEEeC-CCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCC-CeE-EE
Q 002591 709 -ASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET-QAC-RL 784 (903)
Q Consensus 709 -~~V~sl~fsp~~~~ll~sgs~-Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t-~~~-~~ 784 (903)
.....++++|+|+.++++--. +..|.++|+.+++.+..+..+.....+-.....+.+-+.||......+.+ ++. ..
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 223468999999987755534 89999999999999988775433322222222333344555444433222 221 11
Q ss_pred E---ecCCCCCeE-EEEEcC-CCCEEEEEeCCeEEEEECCCCCC--cceEEEeec-------CCCceEEEEEeCCCCEEE
Q 002591 785 S---LQGHTKPID-SVCWDP-SGELLASVSEDSVRVWTVGSGSE--GECVHELSC-------NGNKFHSCVFHPTYPSLL 850 (903)
Q Consensus 785 ~---l~~h~~~V~-sl~~sp-dg~~lasgs~d~I~iwdl~s~~~--~~~i~~~~~-------~~~~i~si~~sp~g~~l~ 850 (903)
. +.....++. .-.|.+ +|++++...+++|.+.|+..... ...+..+.. ....+.-+++++++++++
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 1 111011110 013455 88888777778999999754321 111111111 122334489999999998
Q ss_pred EEEC----------CCeEEEEECCCCcEEEEccCCCCEEEEEEecCCC-EEEEEe-cCCcEEEcC
Q 002591 851 VIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 903 (903)
Q Consensus 851 t~s~----------dg~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~-~LaSgs-~DG~I~IWd 903 (903)
+... .+.|.++|..+++.+....-...+..+++++|++ +|++.+ .++.|.++|
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 8531 2489999999999996665667999999999999 887766 577788875
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-09 Score=114.58 Aligned_cols=263 Identities=16% Similarity=0.158 Sum_probs=185.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCC--CceeE--EeccCCCCeEEEEECCCCCEEEEEeC-CCcEEEE
Q 002591 621 ASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDT--LKSKT--NLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVW 692 (903)
Q Consensus 621 ~H~~~V~~l~fspdg~~Latgs~D---g~V~vWd~~t--~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~IW 692 (903)
.+.+.++-|+|+++.++|.++..+ |.|..|.++. |+... .......+-+.|++++++++|+++.. -|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 467789999999999999988654 7788887774 43322 22222333488999999999999987 6899999
Q ss_pred eCCCCCceeE--EeccCCCc----------eEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----e--cCceeE
Q 002591 693 DADNPGYSLR--TFMGHSAS----------VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----K--GGTAQM 754 (903)
Q Consensus 693 Dl~~~~~~~~--~~~~h~~~----------V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~----~--~~~~~v 754 (903)
-+.+.+.... ....|.+. +.+..|.|++++++++.-.-..|.+|++..++....- + .+...+
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 9977554322 22335554 8889999998877755545568999999987654322 2 356789
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCC-eEEEEecC---------CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC
Q 002591 755 RFQPHLGRYLAAAA-ENVVSILDAETQ-ACRLSLQG---------HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 821 (903)
Q Consensus 755 ~~sp~~~~ll~~s~-dg~I~i~D~~t~-~~~~~l~~---------h~~~V~sl~~spdg~~lasgs~d--~I~iwdl~s~ 821 (903)
.|+|+++...+.+. +++|.+|+.... ..+..+.. ...+...|.+++||++|+++... .|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999998777766 899999988763 22222211 23457789999999999999876 8899988754
Q ss_pred CC-cceEEEeecCCCceEEEEEeCCCCEEEEEECCC-eEEEEEC--CCCcEEEEc--cCCCCEEEEEE
Q 002591 822 SE-GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNM--SENKTMTLT--AHEGLIAALAV 883 (903)
Q Consensus 822 ~~-~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg-~I~vwdl--~~~~~~~~~--~h~~~V~sl~~ 883 (903)
.. ...+.....+......+.|++.+++|+++..++ .|.+|.+ .+|++..+. .......|+.|
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEE
Confidence 32 344444455555688999999999999999875 6777755 455554222 33444555555
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.5e-11 Score=121.68 Aligned_cols=108 Identities=23% Similarity=0.477 Sum_probs=86.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEe--CC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECC---CeEEEEE
Q 002591 789 HTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWN 862 (903)
Q Consensus 789 h~~~V~sl~~spdg~~lasgs--~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~d---g~I~vwd 862 (903)
..++|.+++|+|+|+.|++.. .+ .|.+||++ ...+..+. ...+..+.|+|+|++|++++.+ |.|.|||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~----~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK----GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc----ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 345799999999999765543 34 89999996 24444443 5677889999999999998854 5799999
Q ss_pred CCCCcEEEEccCCCCEEEEEEecCCCEEEEEec------CCcEEEcC
Q 002591 863 MSENKTMTLTAHEGLIAALAVSTETGYVASASH------DKFVKLWK 903 (903)
Q Consensus 863 l~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~------DG~I~IWd 903 (903)
+++.+.+....|.. ++.++|+|||++|+++.. |+.++||+
T Consensus 132 ~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 132 VRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 99888886666654 789999999999999874 78888885
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-10 Score=127.39 Aligned_cols=283 Identities=14% Similarity=0.187 Sum_probs=188.4
Q ss_pred cCcceeeeeEeecCCCCeEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCceeEEeccC--CCCe-EEEEEC
Q 002591 609 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-----------DKKAVLWHTDTLKSKTNLEEH--SSLI-TDVRFS 674 (903)
Q Consensus 609 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~-----------Dg~V~vWd~~t~~~~~~l~~h--~~~V-~~l~fs 674 (903)
.|-+|..+..|. |. .|.-+.|||..+||+|-+. ...++|||+.+|...+.|... ...+ .-..||
T Consensus 237 GG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS 314 (698)
T KOG2314|consen 237 GGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS 314 (698)
T ss_pred cCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec
Confidence 333555555543 55 4899999999999999652 246999999999999888762 2223 346899
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeC-----CCcEEEEEcCCCeeeEEee-
Q 002591 675 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-----DGEIRYWSINNGSCTRVFK- 748 (903)
Q Consensus 675 pdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~-----Dg~I~iwDi~t~~~~~~~~- 748 (903)
.|++++|.-..| .|.||+..+ -..+..-.-.-..|..+.|+|.+. +||--.. -..+.+..+.++..+++-.
T Consensus 315 ~DdKy~Arm~~~-sisIyEtps-f~lld~Kslki~gIr~FswsP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nl 391 (698)
T KOG2314|consen 315 HDDKYFARMTGN-SISIYETPS-FMLLDKKSLKISGIRDFSWSPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNL 391 (698)
T ss_pred cCCceeEEeccc-eEEEEecCc-eeeecccccCCccccCcccCCCcc-eEEEEcccccCCcceEEEEecCccceeeeccc
Confidence 999999887765 499998765 222221122335688889999855 4432211 2356677777776665433
Q ss_pred --cCceeEEEecCCCEEEEEEc-------C---CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----e
Q 002591 749 --GGTAQMRFQPHLGRYLAAAA-------E---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----S 812 (903)
Q Consensus 749 --~~~~~v~~sp~~~~ll~~s~-------d---g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d----~ 812 (903)
-....+.|...|.+|++-.. . ..+.|+.++........-.-...|...+|.|.|+.+++-+.. +
T Consensus 392 fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~t 471 (698)
T KOG2314|consen 392 FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNT 471 (698)
T ss_pred eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccc
Confidence 23334567777776665332 1 245667666654433333356788999999999966655433 7
Q ss_pred EEEEECC-CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE---CCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCC
Q 002591 813 VRVWTVG-SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG---CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET 887 (903)
Q Consensus 813 I~iwdl~-s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s---~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg 887 (903)
+.+|.+. +......+..+. ....+.+.|+|.|++++++. ..|.+.+||+.-..+. +-.......+.+.|+|.|
T Consensus 472 vsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtG 549 (698)
T KOG2314|consen 472 VSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTG 549 (698)
T ss_pred eeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCC
Confidence 9999998 444455555554 35677889999999988875 4579999999853333 222233457789999999
Q ss_pred CEEEEEecCCc
Q 002591 888 GYVASASHDKF 898 (903)
Q Consensus 888 ~~LaSgs~DG~ 898 (903)
+|++|++.-+.
T Consensus 550 RYvvT~ss~wr 560 (698)
T KOG2314|consen 550 RYVVTSSSSWR 560 (698)
T ss_pred CEEEEeeehhh
Confidence 99999986543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=119.49 Aligned_cols=148 Identities=13% Similarity=0.278 Sum_probs=110.1
Q ss_pred EEEEECCCCCEEEEEeC----------CCcEEEEeCCCCCceeEEecc-CCCceEEEEecCCCCeEEEE-EeCCCcEEEE
Q 002591 669 TDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICS-CDGDGEIRYW 736 (903)
Q Consensus 669 ~~l~fspdg~~Lasgs~----------Dg~I~IWDl~~~~~~~~~~~~-h~~~V~sl~fsp~~~~ll~s-gs~Dg~I~iw 736 (903)
..+.|+++|++|++-.. -+...||.++.....+..+.- ..+.|.+++|+|++..++++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987655433 234566666543444444432 34579999999999887544 4567899999
Q ss_pred EcCCCeeeEEee-cCceeEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC--
Q 002591 737 SINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-- 810 (903)
Q Consensus 737 Di~t~~~~~~~~-~~~~~v~~sp~~~~ll~~s~d---g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~-- 810 (903)
|++ ++.+..+. .....+.|+|+|+++++++.+ |.|.+||.++.+.+..+. | ..++.++|+|+|++|+++..
T Consensus 89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEecc
Confidence 997 55555554 457789999999999998754 679999999998887765 3 34789999999999998763
Q ss_pred ----C-eEEEEECC
Q 002591 811 ----D-SVRVWTVG 819 (903)
Q Consensus 811 ----d-~I~iwdl~ 819 (903)
| .++||++.
T Consensus 166 r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQ 179 (194)
T ss_pred ceeccccEEEEEec
Confidence 4 78999984
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-09 Score=125.31 Aligned_cols=236 Identities=15% Similarity=0.135 Sum_probs=155.1
Q ss_pred CcEEEEECCCCceeEEeccCCCCeEEEEECCCCCE--E-EEEeCCC--cEEEEeCCCCCceeEEeccCCCceEEEEecCC
Q 002591 645 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR--L-ATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 719 (903)
Q Consensus 645 g~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~--L-asgs~Dg--~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~ 719 (903)
+.|.+.|.+.+ ..+.+......+..-+|+|||+. + ++...+| .|.+.++.+ +. .+.+....+.....+|+||
T Consensus 165 ~~l~~~d~dG~-~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~-g~-~~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQ-NLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLEN-PA-GKKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCC-CceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCC-CC-ceEeecCCCCccceEECCC
Confidence 35777776644 34455556667788999999975 3 2444444 477778875 32 2333334455567899999
Q ss_pred CCeEEEEEeCCC----cEEEEEcCCC---eeeEEeec---CceeEEEecCCCEEEEEEc-CCe--EEEEECCC-CeEEEE
Q 002591 720 KDDLICSCDGDG----EIRYWSINNG---SCTRVFKG---GTAQMRFQPHLGRYLAAAA-ENV--VSILDAET-QACRLS 785 (903)
Q Consensus 720 ~~~ll~sgs~Dg----~I~iwDi~t~---~~~~~~~~---~~~~v~~sp~~~~ll~~s~-dg~--I~i~D~~t-~~~~~~ 785 (903)
|+.++++.+.+| .+.+|++..+ +....... .....+|+|++..|+..+. ++. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 998887765444 3444776653 33333322 2356799999998887764 554 55555542 233444
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECC---CeE
Q 002591 786 LQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSL 858 (903)
Q Consensus 786 l~~h~~~V~sl~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~d---g~I 858 (903)
+..+...+....|+|||+.|+..+.+ .|.+||+.+++. ..+......+....|+|||++|+....+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 44455677889999999988766542 699999987632 2222223456778999999998876543 479
Q ss_pred EEEECCCCcEEEEccCCCCEEEEEEecCC
Q 002591 859 ELWNMSENKTMTLTAHEGLIAALAVSTET 887 (903)
Q Consensus 859 ~vwdl~~~~~~~~~~h~~~V~sl~~spdg 887 (903)
++||+.+++...+....+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999998877666666677788888743
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.3e-10 Score=127.34 Aligned_cols=202 Identities=16% Similarity=0.235 Sum_probs=144.2
Q ss_pred cEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCC--CcEEEEEcCCCeeeEE--eecCceeEEEecCCCEE
Q 002591 688 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRY 763 (903)
Q Consensus 688 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D--g~I~iwDi~t~~~~~~--~~~~~~~v~~sp~~~~l 763 (903)
.|.++|... ...+.+..+...+.+.+|+|+++.++++...+ ..|++||+.+++.... +.+....++|+|+++.+
T Consensus 171 ~l~~~d~~g--~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDG--ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCC--CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 577888753 33555666777899999999999877665433 5799999998864433 34455678999999888
Q ss_pred EEEEc-C--CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCc
Q 002591 764 LAAAA-E--NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 836 (903)
Q Consensus 764 l~~s~-d--g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~ 836 (903)
++... + ..|++||+.++.... +..+........|+|||+.|+.++.. .|++||+.++. ...+..+...
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~~ 323 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGGY 323 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCCC
Confidence 76543 3 369999998875443 34455555678999999987766542 58888887542 2233334556
Q ss_pred eEEEEEeCCCCEEEEEECCC---eEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecCC
Q 002591 837 FHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 897 (903)
Q Consensus 837 i~si~~sp~g~~l~t~s~dg---~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG 897 (903)
+....|+|++++|+.++.++ .|.+||+.++....+... .......|+||+++|+.++.++
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 67889999999999988876 899999988766544433 2345678999999888877654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.7e-10 Score=128.81 Aligned_cols=218 Identities=20% Similarity=0.271 Sum_probs=143.4
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEE-EeCCCc--EEE
Q 002591 618 SVRASTSKVICCHFSSDGKLLATGGHD-K--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKT--VRV 691 (903)
Q Consensus 618 ~l~~H~~~V~~l~fspdg~~Latgs~D-g--~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg~--I~I 691 (903)
.+..+...+.+..|+|||+.|+..+.+ + .|++||+.+++... +..........+|+|||+.|+. .+.++. |++
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 444567788999999999988876543 2 58889988776432 3333334557899999998765 455665 777
Q ss_pred EeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCc--EEEEEcCCCeeeEE-eecC-ceeEEEecCCCEEEEEE
Q 002591 692 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRV-FKGG-TAQMRFQPHLGRYLAAA 767 (903)
Q Consensus 692 WDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~--I~iwDi~t~~~~~~-~~~~-~~~v~~sp~~~~ll~~s 767 (903)
||+.+ + ..+.+..+...+...+|+|++..++++...++. |+++|+.+++..+. +.+. .....|+|+++.++..+
T Consensus 291 ~dl~t-g-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIAT-K-ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCC-C-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 78875 3 345555566667789999999988877765554 66667877765443 2222 23468999999888876
Q ss_pred cC-C--eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEE
Q 002591 768 AE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSC 840 (903)
Q Consensus 768 ~d-g--~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~si 840 (903)
.+ + .|.++|+.+++... +... .......|+|||++|+..+.+ .+++++.. + .....+......+...
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G---~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G---RFKARLPAGQGEVKSP 442 (448)
T ss_pred ecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-C---CceEECcCCCCCcCCC
Confidence 53 3 56778988876543 2222 122345899999977665433 46777763 2 2333343334455666
Q ss_pred EEeC
Q 002591 841 VFHP 844 (903)
Q Consensus 841 ~~sp 844 (903)
+|+|
T Consensus 443 ~Wsp 446 (448)
T PRK04792 443 AWSP 446 (448)
T ss_pred ccCC
Confidence 7766
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.9e-10 Score=127.68 Aligned_cols=220 Identities=19% Similarity=0.218 Sum_probs=147.5
Q ss_pred eeEeecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEE-EeCCC--cE
Q 002591 616 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDK--TV 689 (903)
Q Consensus 616 ~~~l~~H~~~V~~l~fspdg~~Latgs~D---g~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg--~I 689 (903)
...+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+.|+. .+.+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 34455677889999999999999877644 368999998876543 3334445667999999998874 44455 58
Q ss_pred EEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCC--cEEEEEcCCCeeeEEee-c-CceeEEEecCCCEEEE
Q 002591 690 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFK-G-GTAQMRFQPHLGRYLA 765 (903)
Q Consensus 690 ~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg--~I~iwDi~t~~~~~~~~-~-~~~~v~~sp~~~~ll~ 765 (903)
++||+.+ +. ...+..+........|+|++..++++...+| .|+++|+.+++..+... + ......|+|+++.++.
T Consensus 270 y~~d~~~-~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 270 YVMDLAS-RQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEECCC-CC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 8889886 33 4455556666777899999998887765554 57777888777544332 2 2334689999999888
Q ss_pred EEcCC---eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceE
Q 002591 766 AAAEN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFH 838 (903)
Q Consensus 766 ~s~dg---~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~ 838 (903)
...++ .|.+||+.+++...... ........|+|||++|+..+.+ .|.++++... ....+....+.+.
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~ 421 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVR 421 (430)
T ss_pred EEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcC
Confidence 77542 58889999886543222 2233356899999977765543 4677777432 2222333344455
Q ss_pred EEEEeC
Q 002591 839 SCVFHP 844 (903)
Q Consensus 839 si~~sp 844 (903)
..+|+|
T Consensus 422 ~p~ws~ 427 (430)
T PRK00178 422 EPSWSP 427 (430)
T ss_pred CCccCC
Confidence 566665
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-10 Score=125.65 Aligned_cols=274 Identities=18% Similarity=0.275 Sum_probs=196.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---------------ceeEEeccCCCCeEEEEECCCCCEEEEEeCC
Q 002591 622 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---------------KSKTNLEEHSSLITDVRFSPSMPRLATSSFD 686 (903)
Q Consensus 622 H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~---------------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D 686 (903)
......|++|+....+||+|+.||.++|..+.+. ..-.++.+|+..|.-+.|+.+...|-++..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3456889999999999999999999999987532 1123578999999999999999999999999
Q ss_pred CcEEEEeCCCCCceeEEec-cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeee-EEeec-CceeEEEecCCCEE
Q 002591 687 KTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFKG-GTAQMRFQPHLGRY 763 (903)
Q Consensus 687 g~I~IWDl~~~~~~~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~-~~~~~-~~~~v~~sp~~~~l 763 (903)
|-|.||-+.++..+-..+. ...+.|.+++|.-+|..+ +....||.|.+=.++..+.. +.+++ ....+.|+++...+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI-cIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI-CIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE-EEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 9999999987544332222 345678999999998754 57788999888777654432 22332 34568899999999
Q ss_pred EEEEcCCeEEEEECCCC-------eEEEE----ecCCCCCeEEEEEc--------CCCCEEEEEeCC-eEEEEECCCCCC
Q 002591 764 LAAAAENVVSILDAETQ-------ACRLS----LQGHTKPIDSVCWD--------PSGELLASVSED-SVRVWTVGSGSE 823 (903)
Q Consensus 764 l~~s~dg~I~i~D~~t~-------~~~~~----l~~h~~~V~sl~~s--------pdg~~lasgs~d-~I~iwdl~s~~~ 823 (903)
+.+-..|.+.+||.... .+... +......|..++|. |+...|+.+-.+ .+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 99999999999997542 12111 12223346667774 466677777666 666655444333
Q ss_pred cceEEEeecCCCceEEEEEeCCCCEEEEEECCC---------eEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEe
Q 002591 824 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---------SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 894 (903)
Q Consensus 824 ~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg---------~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs 894 (903)
+..+.. +-.+..+.|+++|..|++++.+. .|.+|..-..-.-++......|++++|-..|-.++.+
T Consensus 252 Pvv~dt----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A- 326 (1189)
T KOG2041|consen 252 PVVVDT----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA- 326 (1189)
T ss_pred CeEEec----ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-
Confidence 222222 46788899999999999998753 5777766554444778888899999997777666665
Q ss_pred cCCcEEE
Q 002591 895 HDKFVKL 901 (903)
Q Consensus 895 ~DG~I~I 901 (903)
.|+.|++
T Consensus 327 vdsfiyf 333 (1189)
T KOG2041|consen 327 VDSFIYF 333 (1189)
T ss_pred ecceEEE
Confidence 4666654
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.4e-10 Score=123.94 Aligned_cols=184 Identities=18% Similarity=0.287 Sum_probs=147.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEecc---CCCCeEEEEE------CC--------------CCCEEEEEeCCCcE
Q 002591 633 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE---HSSLITDVRF------SP--------------SMPRLATSSFDKTV 689 (903)
Q Consensus 633 pdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~---h~~~V~~l~f------sp--------------dg~~Lasgs~Dg~I 689 (903)
+-..++|....||.++|||+.+++....|.. -++..++..| +| +-..|+-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456899999999999999998887776653 2344555555 22 33467888889999
Q ss_pred EEEeCCCCCceeEEec--cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceeEEEecCCCEEE
Q 002591 690 RVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 764 (903)
Q Consensus 690 ~IWDl~~~~~~~~~~~--~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~---~~~~v~~sp~~~~ll 764 (903)
.+|++.. ++....+. .|.+.|.++.++.+-. .|.+++.|+.|.+|+......++.++. .+..++++|+++.++
T Consensus 83 ~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAG-GEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecC-CeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 9999987 55555554 6999999999987755 667999999999999999998888865 467799999988887
Q ss_pred EEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC-----CCEEEEEeC-C-eEEEEECCC
Q 002591 765 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-----GELLASVSE-D-SVRVWTVGS 820 (903)
Q Consensus 765 ~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd-----g~~lasgs~-d-~I~iwdl~s 820 (903)
+++ +.|.+||+++++.+.+|.+|.++|.++.|.-+ |.+|.++.. + .+.+|-+..
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 765 68999999999999999999999999999876 676666543 3 678887765
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-09 Score=124.48 Aligned_cols=211 Identities=12% Similarity=0.116 Sum_probs=138.2
Q ss_pred cEEEEeCCCCCceeEEeccCCCceEEEEecCCCCe--EEEEEeCCC--cEEEEEcCCCeee--EEeecCceeEEEecCCC
Q 002591 688 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDG--EIRYWSINNGSCT--RVFKGGTAQMRFQPHLG 761 (903)
Q Consensus 688 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~--ll~sgs~Dg--~I~iwDi~t~~~~--~~~~~~~~~v~~sp~~~ 761 (903)
.|.+.|.+. ...+.+......+.+-+|+|||.. ++++...+| .|++.++.+++.. ..+.+......|+|++.
T Consensus 166 ~l~~~d~dG--~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDG--QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCC--CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 566666653 344555556666778899999876 333555444 5778888877643 34556666789999999
Q ss_pred EEEEEEc-CC----eEEEEECCCC---eEEEEecCCCCCeEEEEEcCCCCEEEEEeC-C---eEEEEECCCCCCcceEEE
Q 002591 762 RYLAAAA-EN----VVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSE-D---SVRVWTVGSGSEGECVHE 829 (903)
Q Consensus 762 ~ll~~s~-dg----~I~i~D~~t~---~~~~~l~~h~~~V~sl~~spdg~~lasgs~-d---~I~iwdl~s~~~~~~i~~ 829 (903)
.|+.... +| .+.+|++..+ ........+.......+|+|||+.|+..+. + .|+++++.... .....
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~ 321 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRL 321 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEE
Confidence 9888764 22 3444676653 333333333344567899999997776653 3 35555554211 12233
Q ss_pred eecCCCceEEEEEeCCCCEEEEEECC---CeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEec-C--CcEEEc
Q 002591 830 LSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH-D--KFVKLW 902 (903)
Q Consensus 830 ~~~~~~~i~si~~sp~g~~l~t~s~d---g~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~-D--G~I~IW 902 (903)
+......+....|+|||++|+..+.+ ..|++||+.+++...+......+....|+|||++|+.... + ..|++|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 33334566788999999999887654 3799999999988766655557788999999998775443 3 345554
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.7e-11 Score=134.36 Aligned_cols=278 Identities=15% Similarity=0.284 Sum_probs=196.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEecc-CCCCeEEEEECCCC--CEEEEEeCCCcEEEEeCCCC-
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEE-HSSLITDVRFSPSM--PRLATSSFDKTVRVWDADNP- 697 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t-~~~~~~l~~-h~~~V~~l~fspdg--~~Lasgs~Dg~I~IWDl~~~- 697 (903)
.+.+.++.++|.|+-+|+++.-| +.+.|++. +...+-+.. ..-.|-++.|++.. .+-++......-.||++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 45788899999999999998776 55667663 333333321 22347788887753 34555555566778988643
Q ss_pred -CceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCee-eE---EeecCceeEEEecCCCEEEEEEcCCeE
Q 002591 698 -GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TR---VFKGGTAQMRFQPHLGRYLAAAAENVV 772 (903)
Q Consensus 698 -~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~-~~---~~~~~~~~v~~sp~~~~ll~~s~dg~I 772 (903)
..+-..+.+|...|+.+.|+|....++++|+.|-.|..||+++... +. ........+.|+-....+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 2344567799999999999999999999999999999999998652 22 234567789999999999999999999
Q ss_pred EEEECCCC-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 002591 773 SILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 849 (903)
Q Consensus 773 ~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg-~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l 849 (903)
.+||++.+ .++..+++|...|..+.|..-- ..+.+++.| +|+.||....... -........+|..-.+.|-|.-.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e--~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE--SKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc--cceeccccCcceeccccccCcee
Confidence 99999987 6788899999999999988633 356677777 9999999765321 11122224566666666655433
Q ss_pred EEEE--CCCeEEEE---------ECCCC-cEE-EEccCCCCEEEEEEecCCC----------EEEEEecCCcEEEcC
Q 002591 850 LVIG--CYQSLELW---------NMSEN-KTM-TLTAHEGLIAALAVSTETG----------YVASASHDKFVKLWK 903 (903)
Q Consensus 850 ~t~s--~dg~I~vw---------dl~~~-~~~-~~~~h~~~V~sl~~spdg~----------~LaSgs~DG~I~IWd 903 (903)
++-- .+..|.++ +..++ +.+ ++.+|.+.|..+.|-..+. .|+|.+.|..+++|.
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 3222 12234443 33332 223 8889999998877743221 599999999999993
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-09 Score=118.66 Aligned_cols=246 Identities=13% Similarity=0.229 Sum_probs=166.7
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCC--EEEE-----EeCCCcEEEEeCCCCC-
Q 002591 627 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLAT-----SSFDKTVRVWDADNPG- 698 (903)
Q Consensus 627 ~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~--~Las-----gs~Dg~I~IWDl~~~~- 698 (903)
++..|+.|..+.|- -..+.|.+|++...+.+ .-+-|...|+.+.++|... .||+ .+.-..|+||.+...+
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 78999998764432 23567999998763322 2234678899999999743 3332 2445679999886311
Q ss_pred ---ceeEEeccCCCceEEEEecCCCCeEEEEEeC--C---------CcEEEEEcCCCeeeEEe--ecCceeEEEecCCCE
Q 002591 699 ---YSLRTFMGHSASVMSLDFHPNKDDLICSCDG--D---------GEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGR 762 (903)
Q Consensus 699 ---~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~--D---------g~I~iwDi~t~~~~~~~--~~~~~~v~~sp~~~~ 762 (903)
...++|.. .+. ..+.|++.+.-+|+.++. | .+++++++...++...+ .+++.+++|++++..
T Consensus 207 ~~~~a~ksFFk-adk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 207 HQPVANKSFFK-ADK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cchhhhccccc-cce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 11122221 222 347888887776654432 2 46888888855555544 478999999999988
Q ss_pred EEEEEc--CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCc
Q 002591 763 YLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 836 (903)
Q Consensus 763 ll~~s~--dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~ 836 (903)
|+++.. -..+.|||++. +++..+ .+++-+++-|+|.|++|+.++-+ .|.|||+.+. +++..+.. ..
T Consensus 285 F~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a--~~ 356 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKA--AN 356 (566)
T ss_pred EEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---hhcccccc--CC
Confidence 776554 67999999873 444444 45778899999999988887765 7999999874 55555543 33
Q ss_pred eEEEEEeCCCCEEEEEEC------CCeEEEEECCCCcEEEEccCCCCEEEEEEec
Q 002591 837 FHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTMTLTAHEGLIAALAVST 885 (903)
Q Consensus 837 i~si~~sp~g~~l~t~s~------dg~I~vwdl~~~~~~~~~~h~~~V~sl~~sp 885 (903)
.+-+.|+|||.+|++++. |+.++||++....+.. .........++|-|
T Consensus 357 tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~-~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE-KMFKSELLQVEWRP 410 (566)
T ss_pred ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh-hhhhHhHhheeeee
Confidence 566799999999999986 5789999987654431 11111566667765
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-08 Score=108.87 Aligned_cols=246 Identities=11% Similarity=0.114 Sum_probs=156.1
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceeEEeccCC-------CCeEEEEEC
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEHS-------SLITDVRFS 674 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~----------Dg~V~vWd~~t~~~~~~l~~h~-------~~V~~l~fs 674 (903)
+.+.+..+.....+-- + ++|||+.|+++.. +..|.|||+.+++.+..+.... ..-..++++
T Consensus 36 ~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls 113 (352)
T TIGR02658 36 AGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT 113 (352)
T ss_pred CCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC
Confidence 4556666664444333 4 9999998887765 6899999999999999887422 234578999
Q ss_pred CCCCEEEEEeC--CCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCC-Cee-e---EEe
Q 002591 675 PSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSC-T---RVF 747 (903)
Q Consensus 675 pdg~~Lasgs~--Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t-~~~-~---~~~ 747 (903)
+||++|++... +..|.++|+.+ ++.+..+.- .++..-+..+.+ .+++ -| .||......+.. ++. . ..|
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~-~kvv~ei~v-p~~~~vy~t~e~-~~~~-~~-~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEG-KAFVRMMDV-PDCYHIFPTAND-TFFM-HC-RDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCC-CcEEEEEeC-CCCcEEEEecCC-ccEE-Ee-ecCceEEEEecCCCceEEeeeeee
Confidence 99999998763 78999999998 666665553 222222222222 1111 22 244444433322 111 1 111
Q ss_pred ecC-----ceeEEEec-CCCEEEEEEcCCeEEEEECCC-----CeEEEEecC-------CCCCeEEEEEcCCCCEEEEEe
Q 002591 748 KGG-----TAQMRFQP-HLGRYLAAAAENVVSILDAET-----QACRLSLQG-------HTKPIDSVCWDPSGELLASVS 809 (903)
Q Consensus 748 ~~~-----~~~v~~sp-~~~~ll~~s~dg~I~i~D~~t-----~~~~~~l~~-------h~~~V~sl~~spdg~~lasgs 809 (903)
... ... .+.+ ++..+++ +.+|.|++.|+.. .+....+.. ..+.+.-++++++++.++...
T Consensus 189 ~~~~~~v~~rP-~~~~~dg~~~~v-s~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~ 266 (352)
T TIGR02658 189 HPEDEYLINHP-AYSNKSGRLVWP-TYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLA 266 (352)
T ss_pred cCCccccccCC-ceEcCCCcEEEE-ecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEe
Confidence 110 111 3455 5544444 4459999999543 333332221 223345599999999777642
Q ss_pred ----------C-CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEE-CCCeEEEEECCCCcEEE
Q 002591 810 ----------E-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMT 870 (903)
Q Consensus 810 ----------~-d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~-~l~t~s-~dg~I~vwdl~~~~~~~ 870 (903)
. +.|.++|..+. +.+..+.. +..+..+++++|++ +|++.. .++.|.++|..+++.+.
T Consensus 267 ~~~~~~thk~~~~~V~ViD~~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 267 DQRAKWTHKTASRFLFVVDAKTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred cCCccccccCCCCEEEEEECCCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 1 37999999887 55555544 66899999999999 777776 46889999999998873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.7e-10 Score=114.36 Aligned_cols=241 Identities=19% Similarity=0.225 Sum_probs=167.8
Q ss_pred CCCCeEEEEEcC---CCC-EEEEEeCCCcEEEEECCCCceeEEeccCC------CCeEEEEECCCCCEEEEEeCCCcEEE
Q 002591 622 STSKVICCHFSS---DGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHS------SLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 622 H~~~V~~l~fsp---dg~-~Latgs~Dg~V~vWd~~t~~~~~~l~~h~------~~V~~l~fspdg~~Lasgs~Dg~I~I 691 (903)
.+..+..+.|.. +|. .|+-+..+|.|.+|..........+++-. ....++.|++.+..++++..+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 445667777753 455 56677788999999876544444444321 13567889999999999999999985
Q ss_pred EeCCC-CCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCC
Q 002591 692 WDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN 770 (903)
Q Consensus 692 WDl~~-~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg 770 (903)
-+... .-+.+..++.|...++...|+....+++++|++|+.+..||++..+ ...+.
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~---------------------- 204 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWH---------------------- 204 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeee----------------------
Confidence 55443 1223447889999999999998888899999999999999998332 11111
Q ss_pred eEEEEECCCCeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC-
Q 002591 771 VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP- 847 (903)
Q Consensus 771 ~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp-dg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~- 847 (903)
..+.|...|.+|.-+| .+.+|++|+.| .|++||.++-. +.+..... .+.|..+.++|.-.
T Consensus 205 --------------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--kPl~~~~v-~GGVWRi~~~p~~~~ 267 (339)
T KOG0280|consen 205 --------------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--KPLFKAKV-GGGVWRIKHHPEIFH 267 (339)
T ss_pred --------------cceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--CccccCcc-ccceEEEEecchhhh
Confidence 0123778888888776 46699999999 99999998643 33333222 47899999998543
Q ss_pred EEEEEECCCeEEEEECCCCcEE------EEccCCCCEEEEEEecCCCEEEEEe-cCCcEE-Ec
Q 002591 848 SLLVIGCYQSLELWNMSENKTM------TLTAHEGLIAALAVSTETGYVASAS-HDKFVK-LW 902 (903)
Q Consensus 848 ~l~t~s~dg~I~vwdl~~~~~~------~~~~h~~~V~sl~~spdg~~LaSgs-~DG~I~-IW 902 (903)
.+++++..+-.+|.+++.+... ....|.+.+..-.|.....+|+||+ .|+.|+ +|
T Consensus 268 ~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 268 RLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred HHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 3445555555667766554321 4557888888888865556788876 577755 76
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-11 Score=128.69 Aligned_cols=278 Identities=18% Similarity=0.228 Sum_probs=190.1
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-------CCceeEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002591 615 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 687 (903)
Q Consensus 615 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~-------t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 687 (903)
....+.+|...|..++--.+.+.+++++.|++|++|.++ +..+..++..|+.+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 345688999999999888888899999999999999876 234677888999999999999998888765 88
Q ss_pred cEEEEeCCCCCceeEEec--cCCCceEEEEecCC--CCeEEEEEeCCCcEEEEEcCCCeeeEEee--------cCceeEE
Q 002591 688 TVRVWDADNPGYSLRTFM--GHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFK--------GGTAQMR 755 (903)
Q Consensus 688 ~I~IWDl~~~~~~~~~~~--~h~~~V~sl~fsp~--~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~--------~~~~~v~ 755 (903)
-|.+||.-- +..+.... ...+.+..+...++ ...+++.|+...+|+++|.+..+.+..++ .-+.+++
T Consensus 805 giHlWDPFi-gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFI-GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccc-cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 899999764 33322111 11222333333333 34455566889999999999887655443 2356788
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEE-EECCCCCCcceEEEeecC
Q 002591 756 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV-WTVGSGSEGECVHELSCN 833 (903)
Q Consensus 756 ~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~i-wdl~s~~~~~~i~~~~~~ 833 (903)
+.+.|++++++-+.|.|.+.|.++|+.+..+...+.....++ .|....++....| ++.+ |....+ ......+..
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg---imh~q~kpp 959 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG---IMHLQDKPP 959 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC---eeeeccCCC
Confidence 999999999999999999999999999887765554444443 2445566666666 7777 876544 111111111
Q ss_pred CCceEEEEEeCCCCEEEEEECCCeEEEEECCCC-------cEEEEccCCCCEEEEEEecCCCEEEEEecCCcEEE
Q 002591 834 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN-------KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 901 (903)
Q Consensus 834 ~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~-------~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~I 901 (903)
..+.. -.-.-|..++++.....+.||.-... ..+.-....+..++++.-|-+.-++.|.+.|.|.+
T Consensus 960 pepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 960 PEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred Ccchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 11110 11123566788777778888843211 11122345677888888887777888999998876
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-09 Score=117.00 Aligned_cols=274 Identities=16% Similarity=0.189 Sum_probs=188.4
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCC---------
Q 002591 617 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--------- 687 (903)
Q Consensus 617 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--------- 687 (903)
..+..-.-++..++|||.|++|++.... -|.+|+...+..+..+. | ..|..+.|+|+++||++=+...
T Consensus 26 ~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~s 102 (561)
T COG5354 26 TRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEIS 102 (561)
T ss_pred ccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccC
Confidence 3444466789999999999999987655 49999988766555553 3 3599999999999999875433
Q ss_pred ------cEEEEeCCCCCceeEEeccCCCc--eE-EEEecCCCCeEEEEEeCCCcEEEEEcCCCee----eEEee-cCcee
Q 002591 688 ------TVRVWDADNPGYSLRTFMGHSAS--VM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFK-GGTAQ 753 (903)
Q Consensus 688 ------~I~IWDl~~~~~~~~~~~~h~~~--V~-sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~----~~~~~-~~~~~ 753 (903)
.+.+||+.+ +.++..+..-..+ .+ -+.|+-++.+.+-. ....++|+++ +... .+.++ .++..
T Consensus 103 p~~~~n~~~vwd~~s-g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr~~gi~d 178 (561)
T COG5354 103 PFTSKNNVFVWDIAS-GMIVFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLRPVGILD 178 (561)
T ss_pred CccccCceeEEeccC-ceeEeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhccccceee
Confidence 499999998 7788888876655 55 67888776544323 2457999997 3321 22233 46677
Q ss_pred EEEecCCC--EEEEE-----EcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe------------CCeEE
Q 002591 754 MRFQPHLG--RYLAA-----AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS------------EDSVR 814 (903)
Q Consensus 754 v~~sp~~~--~ll~~-----s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs------------~d~I~ 814 (903)
..|+|.++ .|++- ...+.++||.+...+.+.+..-....-..+.|.+.|++|++-. +..++
T Consensus 179 FsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 179 FSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred EEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEE
Confidence 78888743 23332 2357899999887766654433333345678999998665421 12578
Q ss_pred EEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE--CCCeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEE
Q 002591 815 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG--CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 892 (903)
Q Consensus 815 iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s--~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaS 892 (903)
|+++... .+.......++|..++|.|.++.+++++ ..-.+.++|++.+ +.+......=+.+.|+|.+++++.
T Consensus 259 l~~~~e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~ 332 (561)
T COG5354 259 LLRITER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILF 332 (561)
T ss_pred EEeeccc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEE
Confidence 8888632 2222224478999999999998888777 3458999999887 444455555667778888888888
Q ss_pred EecC---CcEEEcC
Q 002591 893 ASHD---KFVKLWK 903 (903)
Q Consensus 893 gs~D---G~I~IWd 903 (903)
++-| |.|.||+
T Consensus 333 agF~nl~gni~i~~ 346 (561)
T COG5354 333 AGFDNLQGNIEIFD 346 (561)
T ss_pred ecCCccccceEEec
Confidence 7755 4566664
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.7e-09 Score=116.87 Aligned_cols=253 Identities=14% Similarity=0.070 Sum_probs=160.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCce--
Q 002591 634 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV-- 711 (903)
Q Consensus 634 dg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V-- 711 (903)
++..+++++.++.|+.||.++++.+............... .+..++.++.++.|+.||.++ ++.+..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAAT-GERLWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCC-CceeeEEccCCCceee
Confidence 4567888889999999999999988776543321111112 245777788899999999987 55555444322211
Q ss_pred ---EEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc----e------eEE--EecCCCEEEEEEcCCeEEEEE
Q 002591 712 ---MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----A------QMR--FQPHLGRYLAAAAENVVSILD 776 (903)
Q Consensus 712 ---~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~----~------~v~--~sp~~~~ll~~s~dg~I~i~D 776 (903)
.+..+. ++ .++.+..+|.|..+|+++++.+....... . .+. ..-.++.+++++.++.++.||
T Consensus 181 ~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 181 RGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred cCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 111122 23 45577888999999999998765432110 0 010 111357888888999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC-CCceEEEEEeCCCCEEEEEEC
Q 002591 777 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGC 854 (903)
Q Consensus 777 ~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~-~~~i~si~~sp~g~~l~t~s~ 854 (903)
.++++.+...... ....... ++..|++++.+ .|..+|..+++. +...... ......... .+.+|++++.
T Consensus 258 ~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~---~W~~~~~~~~~~ssp~i--~g~~l~~~~~ 328 (377)
T TIGR03300 258 LRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGSE---LWKNDELKYRQLTAPAV--VGGYLVVGDF 328 (377)
T ss_pred CCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCcE---EEccccccCCccccCEE--ECCEEEEEeC
Confidence 9999888766521 1122222 35566666666 999999988742 3222111 111222222 4568999999
Q ss_pred CCeEEEEECCCCcEE-EEccCCCCEEE-EEEecCCCEEEEEecCCcEEEcC
Q 002591 855 YQSLELWNMSENKTM-TLTAHEGLIAA-LAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 855 dg~I~vwdl~~~~~~-~~~~h~~~V~s-l~~spdg~~LaSgs~DG~I~IWd 903 (903)
+|.|+++|..+++.+ .+..+...+.. .++ .++ .|+.++.||.|+.|.
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~-~~~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDGSGIASPPVV-VGD-GLLVQTRDGDLYAFR 377 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCccccCCEE-ECC-EEEEEeCCceEEEeC
Confidence 999999999999988 55545543333 333 333 588889999998874
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-08 Score=108.45 Aligned_cols=285 Identities=14% Similarity=0.144 Sum_probs=188.4
Q ss_pred CCCCcccccccCc-ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEeccCCCCeEEEEECCC
Q 002591 599 DAGGRGMDVSQGF-SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPS 676 (903)
Q Consensus 599 ~~~~~~~d~~~~~-~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~-t~~~~~~l~~h~~~V~~l~fspd 676 (903)
...+..|....+- +|+.+..+.+|-..-.-+ .++..+....||.=.||.++ .|+-++..+..+ .-.+-..+.|
T Consensus 203 GtrGklWis~d~g~tFeK~vdl~~~vS~PmIV----~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt-dYY~R~~nsD 277 (668)
T COG4946 203 GTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV----GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT-DYYPRNANSD 277 (668)
T ss_pred CccceEEEEecCCcceeeeeecCCCcCCceEE----cceEEEEecccCccceEEeccCCchhhhcCCch-hccccccCCC
Confidence 3445566666544 788888887775432211 12333344567666666654 343333222111 1223334678
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCceeEEec-----cC--C---CceEEEE-ecCCCCeEEEEEeCCCcEEEEEcCCCeeeE
Q 002591 677 MPRLATSSFDKTVRVWDADNPGYSLRTFM-----GH--S---ASVMSLD-FHPNKDDLICSCDGDGEIRYWSINNGSCTR 745 (903)
Q Consensus 677 g~~Lasgs~Dg~I~IWDl~~~~~~~~~~~-----~h--~---~~V~sl~-fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~ 745 (903)
|+.|+... .|.|.+||.++.......+. .. . .++.-+. |++-...+++..+ .|...|.+...+-.+.
T Consensus 278 GkrIvFq~-~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq 355 (668)
T COG4946 278 GKRIVFQN-AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ 355 (668)
T ss_pred CcEEEEec-CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE
Confidence 88877654 57799999987432111111 00 0 1111111 4444445666666 5888888877666555
Q ss_pred Ee-ecCceeEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002591 746 VF-KGGTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 822 (903)
Q Consensus 746 ~~-~~~~~~v~~sp~~~~ll~~s~dg-~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~ 822 (903)
.- ++.+.-..+..+...++.+..|| .+-|||.++++... +...-+.|.++..+++|++++.+.+. .|.++|+.++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 43 34566677777778888899888 89999999887554 44467889999999999999988888 99999999873
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEECCC----eEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEe
Q 002591 823 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 894 (903)
Q Consensus 823 ~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg----~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs 894 (903)
....-....+-|+.+.|||++++|+.+--+| .|++||+.+++........+.=.+-+|.||+++|.--+
T Consensus 435 ---v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 435 ---VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ---eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 2222334467799999999999999987776 79999999999987666666666778999999876544
|
|
| >KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-11 Score=124.06 Aligned_cols=66 Identities=32% Similarity=0.758 Sum_probs=56.5
Q ss_pred chhhHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCCCCcccCCCCCcchHhHHHHHHHHHhhhccc
Q 002591 4 TNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEK 70 (903)
Q Consensus 4 ~~~~~~~~l~~yiydyl~~~~~~~~a~a~~~e~~~~~~~~~~d~~~~fL~eWw~~fwdif~a~~~~~ 70 (903)
+.-.|||.|..||||||++-++.++|+.|+.|-....+ ...-.+.+||.+|||||||+|.|.-.++
T Consensus 12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRR 77 (354)
T KOG4594|consen 12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERR 77 (354)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCcccc
Confidence 34579999999999999999999999999999775544 5567888999999999999998765443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.7e-08 Score=102.74 Aligned_cols=259 Identities=11% Similarity=0.106 Sum_probs=177.3
Q ss_pred CCcEEEEECCCCc--e-eEEeccCCCCeEEEEECCCCCEEEEEeC---CCcEEEEeCCCCCceeEEec---cCCCceEEE
Q 002591 644 DKKAVLWHTDTLK--S-KTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFM---GHSASVMSL 714 (903)
Q Consensus 644 Dg~V~vWd~~t~~--~-~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~IWDl~~~~~~~~~~~---~h~~~V~sl 714 (903)
+.-|++|++++.. . ...+-.+...++-|+|+++.++|+++.. +|.|..|.++...-.+..+. ....+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4569999987322 1 1223356778999999999999988855 57888888875322222221 122333679
Q ss_pred EecCCCCeEEEEEeCCCcEEEEEcCC-CeeeEE---e------------ecCceeEEEecCCCEEEEEEc-CCeEEEEEC
Q 002591 715 DFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---F------------KGGTAQMRFQPHLGRYLAAAA-ENVVSILDA 777 (903)
Q Consensus 715 ~fsp~~~~ll~sgs~Dg~I~iwDi~t-~~~~~~---~------------~~~~~~v~~sp~~~~ll~~s~-dg~I~i~D~ 777 (903)
++++++..++++...-|.|.++-+.. |..... + ..+.....+.|++++++++.- ...|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999988887777789999999965 432211 1 123566789999999888876 478999999
Q ss_pred CCCeEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC-CCcceEEEeec------CCCceEEEEEeCC
Q 002591 778 ETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG-SEGECVHELSC------NGNKFHSCVFHPT 845 (903)
Q Consensus 778 ~t~~~~~~l~---~h~~~V~sl~~spdg~~lasgs~d--~I~iwdl~s~-~~~~~i~~~~~------~~~~i~si~~sp~ 845 (903)
..++....-. .....-+.|.|+|++++.++.++= +|.+|.+... .+.+.+..+.. .......|..+++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9876543221 233456789999999977776653 9999999874 23333333221 2445778899999
Q ss_pred CCEEEEEECC-CeEEEEECCC--CcEE---EEccCCCCEEEEEEecCCCEEEEEecCC-cEEEc
Q 002591 846 YPSLLVIGCY-QSLELWNMSE--NKTM---TLTAHEGLIAALAVSTETGYVASASHDK-FVKLW 902 (903)
Q Consensus 846 g~~l~t~s~d-g~I~vwdl~~--~~~~---~~~~h~~~V~sl~~spdg~~LaSgs~DG-~I~IW 902 (903)
|++|+++... ..|.+|.+.. +++. ....+....+.+.|++.+++|+++..|+ .|.+|
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 9999887653 4888887754 3333 2334555688999999999999888654 56665
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-08 Score=112.73 Aligned_cols=270 Identities=14% Similarity=0.202 Sum_probs=185.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeC-----------CCcEEEEe
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-----------DKTVRVWD 693 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----------Dg~I~IWD 693 (903)
.-+-+.|||.|.||+|--.-| |.+|--++...+..|. |. .|.-+.|||+.+||+|-+. ...|+|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 346789999999999986655 8899876666666663 44 4899999999999998753 25699999
Q ss_pred CCCCCceeEEecc--CCCce-EEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeE--Eee-cCceeEEEecCCCEEEEEE
Q 002591 694 ADNPGYSLRTFMG--HSASV-MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFK-GGTAQMRFQPHLGRYLAAA 767 (903)
Q Consensus 694 l~~~~~~~~~~~~--h~~~V-~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~--~~~-~~~~~v~~sp~~~~ll~~s 767 (903)
+.+ +...+.|.. ....+ .-+.|+.|+.++... ....|.||+.....++. .++ .++....|+|.+..|+.-.
T Consensus 289 I~t-G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm--~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 289 IAT-GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM--TGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred ccc-cchhcceeccCCCccccceEEeccCCceeEEe--ccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEc
Confidence 998 666666654 22222 346899987754432 23779999987654332 222 3677788999977776654
Q ss_pred cC-----CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-----------eEEEEECCCCCCcceEEEee
Q 002591 768 AE-----NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-----------SVRVWTVGSGSEGECVHELS 831 (903)
Q Consensus 768 ~d-----g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-----------~I~iwdl~s~~~~~~i~~~~ 831 (903)
.+ ..+.+..+.++..+++..-+.-.=..+.|-.+|++|+.--+. .+.|+.++...-......+
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel- 444 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL- 444 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec-
Confidence 42 378888888887777665554444556788888888754221 4667777654322222222
Q ss_pred cCCCceEEEEEeCCCCEEEEEECC---CeEEEEECCC-CcEEEE--ccCCCCEEEEEEecCCCEEEEEe---cCCcEEEc
Q 002591 832 CNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSE-NKTMTL--TAHEGLIAALAVSTETGYVASAS---HDKFVKLW 902 (903)
Q Consensus 832 ~~~~~i~si~~sp~g~~l~t~s~d---g~I~vwdl~~-~~~~~~--~~h~~~V~sl~~spdg~~LaSgs---~DG~I~IW 902 (903)
...|...+|-|.|+.+++.+.. .+|.+|.+++ .....+ .-.....+.+.|+|.|++++.+. ..|.+.++
T Consensus 445 --ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 445 --KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred --chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEE
Confidence 4578899999999998887765 4899998873 222211 12235678899999999988764 45677776
Q ss_pred C
Q 002591 903 K 903 (903)
Q Consensus 903 d 903 (903)
|
T Consensus 523 D 523 (698)
T KOG2314|consen 523 D 523 (698)
T ss_pred e
Confidence 5
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-09 Score=111.21 Aligned_cols=196 Identities=21% Similarity=0.241 Sum_probs=143.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEeccCCCCeEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCcee
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSL 701 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~--~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~IWDl~~~~~~~ 701 (903)
...++.|++.+.-++++..+|.+.+-+....... .+++.|...++...|+... +++++|+.|+.+..||++.++..+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 4568889999999999999999996665544444 4889999999999997643 588999999999999999655554
Q ss_pred EE-eccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCC-CeeeEE--eecCceeEEEecCC-CEEEEEEcCCeEEEEE
Q 002591 702 RT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV--FKGGTAQMRFQPHL-GRYLAAAAENVVSILD 776 (903)
Q Consensus 702 ~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t-~~~~~~--~~~~~~~v~~sp~~-~~ll~~s~dg~I~i~D 776 (903)
.. ...|...|.+|.-+|..+.+|+||+.|-.|++||.++ ++.+.. ..+++-.++.+|.. ..+++++.-+..+|.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 44 6679999999999998888999999999999999994 454432 34677888888765 3455555555666666
Q ss_pred CCCC--e---EEEEecCCCCCeEEEEEcCCCCEEEEEeC-C-eEE-EEECCC
Q 002591 777 AETQ--A---CRLSLQGHTKPIDSVCWDPSGELLASVSE-D-SVR-VWTVGS 820 (903)
Q Consensus 777 ~~t~--~---~~~~l~~h~~~V~sl~~spdg~~lasgs~-d-~I~-iwdl~s 820 (903)
.... + .....+.|.+-+..-.|.....+|++++. | .++ +|-.-+
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 5544 2 33444567777777777555457887652 3 433 664433
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-09 Score=113.40 Aligned_cols=238 Identities=18% Similarity=0.264 Sum_probs=155.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCc----eeEEeccCC------------CceEEEEecCCCCe-EEEE
Q 002591 664 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----SLRTFMGHS------------ASVMSLDFHPNKDD-LICS 726 (903)
Q Consensus 664 h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~----~~~~~~~h~------------~~V~sl~fsp~~~~-ll~s 726 (903)
..+-|.+|.|...|.+||+|+.+|.|.+|.-+...+ ....+..|. ..|..|.|.++++. .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 345689999999999999999999999997654332 223333332 45888999887543 4446
Q ss_pred EeCCCcEEEEEcCCCeee-----------------------------------EEee----cCceeEEEecCCCEEEEEE
Q 002591 727 CDGDGEIRYWSINNGSCT-----------------------------------RVFK----GGTAQMRFQPHLGRYLAAA 767 (903)
Q Consensus 727 gs~Dg~I~iwDi~t~~~~-----------------------------------~~~~----~~~~~v~~sp~~~~ll~~s 767 (903)
...|.+|++|.+...... +++. .++.++.+..+...++ .+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec
Confidence 778999999998643211 1111 1345566666655554 45
Q ss_pred cCCeEEEEECCCCeE---EEEecCC-----CCCeEEEEEcCCCC--EEEEEeCCeEEEEECCCCCCc----ce-------
Q 002591 768 AENVVSILDAETQAC---RLSLQGH-----TKPIDSVCWDPSGE--LLASVSEDSVRVWTVGSGSEG----EC------- 826 (903)
Q Consensus 768 ~dg~I~i~D~~t~~~---~~~l~~h-----~~~V~sl~~spdg~--~lasgs~d~I~iwdl~s~~~~----~~------- 826 (903)
.|-.|.+|.++--.. +..++.+ ...|++..|+|... ++++.+.++|++.|++..... +.
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 577899998874322 2222322 24588999999543 444555559999999843110 00
Q ss_pred --EEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECC-CCcEE-EEccCC------------CCE---EEEEEecCC
Q 002591 827 --VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS-ENKTM-TLTAHE------------GLI---AALAVSTET 887 (903)
Q Consensus 827 --i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~-~~~~~-~~~~h~------------~~V---~sl~~spdg 887 (903)
...+..-...|..+.|+.+|+++++-. .-+|+|||++ +.+.+ +..-|. +.| ..++|+-++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 111111234578899999999888643 3589999983 34433 444443 223 357888899
Q ss_pred CEEEEEecCCcEEEcC
Q 002591 888 GYVASASHDKFVKLWK 903 (903)
Q Consensus 888 ~~LaSgs~DG~I~IWd 903 (903)
.+++||+....+++|+
T Consensus 342 ~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFN 357 (433)
T ss_pred ceEecccccceEEEec
Confidence 9999999999999885
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-08 Score=113.29 Aligned_cols=252 Identities=15% Similarity=0.093 Sum_probs=159.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEE
Q 002591 635 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 714 (903)
Q Consensus 635 g~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl 714 (903)
+..|++++.++.|..+|..+++.+..+.........+.. ++..+++++.++.|..+|..+ ++.+...... ..+.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~~-~~~~~~ 140 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAED-GKELWRAKLS-SEVLSP 140 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCC-CcEeeeeccC-ceeecC
Confidence 568888889999999999999988776654432223332 466888888999999999987 5555444322 222221
Q ss_pred EecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEE------EecCCCEEEEEEcCCeEEEEECCCCeEEEEecC
Q 002591 715 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR------FQPHLGRYLAAAAENVVSILDAETQACRLSLQG 788 (903)
Q Consensus 715 ~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~------~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~ 788 (903)
... .++.+ +.++.+|.|+.||.++++.+..++.....+. ..-.++.++++..++.+..+|.++++.+.....
T Consensus 141 p~v-~~~~v-~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 141 PLV-ANGLV-VVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred CEE-ECCEE-EEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 111 13434 4677799999999999998776654321110 011235777888889999999999987765432
Q ss_pred CCC----C------e-EEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCC
Q 002591 789 HTK----P------I-DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 856 (903)
Q Consensus 789 h~~----~------V-~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg 856 (903)
... . + .+..+ .+..+++++.+ .++.||..+++ .+..... ....... ..+..+++++.+|
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~---~~W~~~~--~~~~~p~--~~~~~vyv~~~~G 289 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGR---VLWKRDA--SSYQGPA--VDDNRLYVTDADG 289 (377)
T ss_pred ccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCc---EEEeecc--CCccCce--EeCCEEEEECCCC
Confidence 100 0 0 11112 24456666656 99999998874 3322221 1111122 2466788889999
Q ss_pred eEEEEECCCCcEEEEc-cC-CCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 857 SLELWNMSENKTMTLT-AH-EGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 857 ~I~vwdl~~~~~~~~~-~h-~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.|+.+|..+++.+... .. ...+.+... .+.+|++++.||.|++||
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 9999999999877322 21 122222222 356888899999998875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.3e-08 Score=120.32 Aligned_cols=280 Identities=16% Similarity=0.231 Sum_probs=184.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEE----ECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC-
Q 002591 621 ASTSKVICCHFSSDGKLLATGGHDKKAVLW----HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD- 695 (903)
Q Consensus 621 ~H~~~V~~l~fspdg~~Latgs~Dg~V~vW----d~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~- 695 (903)
...+.|.++.|-++...|+.+..+|.|.++ |..+. .+.....-...|.|++||||+..|+....+++|.+.+.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 346789999999999999999999999999 44432 233333456789999999999999999989988776431
Q ss_pred -----------CCC----------ceeEEecc------------------------CCCceEEEEecCCCCeEEEEEe--
Q 002591 696 -----------NPG----------YSLRTFMG------------------------HSASVMSLDFHPNKDDLICSCD-- 728 (903)
Q Consensus 696 -----------~~~----------~~~~~~~~------------------------h~~~V~sl~fsp~~~~ll~sgs-- 728 (903)
..+ +.-..|.| +.+.-..|+|-.||.++.++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 000 00000100 2334566999999887665443
Q ss_pred CC---CcEEEEEcCCCeeeEEee---cCceeEEEecCCCEEEEEEc---CCeEEEEECCC---CeEEEEecCCCCCeEEE
Q 002591 729 GD---GEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA---ENVVSILDAET---QACRLSLQGHTKPIDSV 796 (903)
Q Consensus 729 ~D---g~I~iwDi~t~~~~~~~~---~~~~~v~~sp~~~~ll~~s~---dg~I~i~D~~t---~~~~~~l~~h~~~V~sl 796 (903)
.+ ..||||+-+ |....+-+ +-...++|.|.|+.+++.-. ...|.+|+-+. ++....+......|..+
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence 22 579999976 55444332 23456899999998888765 23566665332 22222222345679999
Q ss_pred EEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeec-CCCceEEEEEeCCCC-EEEEEECCCeEEEEEC----CCC----
Q 002591 797 CWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYP-SLLVIGCYQSLELWNM----SEN---- 866 (903)
Q Consensus 797 ~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~-~~~~i~si~~sp~g~-~l~t~s~dg~I~vwdl----~~~---- 866 (903)
.|++|+.+||....+.|.+|...+..- ....++.. ....+..+.|+|... .|.+.+.++.+..+++ ..+
T Consensus 311 ~Wn~ds~iLAv~~~~~vqLWt~~NYHW-YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDRVQLWTRSNYHW-YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCCceEEEeeCCEE-EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 999999999998888999999876521 12222222 223345588998654 4666666565544433 211
Q ss_pred -----cEEEE-----------------------ccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 867 -----KTMTL-----------------------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 867 -----~~~~~-----------------------~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
....+ ......|.+++|++++..+++-..||.|.+|+
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 11111 11457899999999998899999999999874
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.9e-09 Score=121.79 Aligned_cols=194 Identities=13% Similarity=0.206 Sum_probs=149.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCC----eEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----ITDVRFSPSMPRLATSSFDKTVRVWDADNPG 698 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~----V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~ 698 (903)
.+.|....+..+.+.++.++.+..+.+||...+.....+...... ..-+-++++.-++++|+.-+.|.+|+.....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 344555666677889999999999999998876666555433221 2223346666789999999999999998544
Q ss_pred ceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeE-E---eecCceeEEEecCCCEEEEEEcCCeEEE
Q 002591 699 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-V---FKGGTAQMRFQPHLGRYLAAAAENVVSI 774 (903)
Q Consensus 699 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~-~---~~~~~~~v~~sp~~~~ll~~s~dg~I~i 774 (903)
... .+.+|.+.|.++.|+-+|. +++++++|.++|+|++++.+... + +...+-.+++.|. ++++++.|-+.++
T Consensus 167 ~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 167 KPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred Ccc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEE
Confidence 444 6889999999999999877 55699999999999999988665 2 2234566778887 9999999999999
Q ss_pred EECCCCeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002591 775 LDAETQACRLSLQGHT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSG 821 (903)
Q Consensus 775 ~D~~t~~~~~~l~~h~-~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~ 821 (903)
|+.... .+..+..|. ..|..++..++...+++++.| .+++||+...
T Consensus 243 W~~~~~-~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 243 WGVNGT-QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred Eecccc-eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 965543 333667765 468999999988899999999 9999998754
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-09 Score=111.22 Aligned_cols=237 Identities=17% Similarity=0.315 Sum_probs=161.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eeEEeccCC------------CCeEEEEECCCCC--EEEE
Q 002591 622 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHS------------SLITDVRFSPSMP--RLAT 682 (903)
Q Consensus 622 H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~-----~~~~l~~h~------------~~V~~l~fspdg~--~Las 682 (903)
..+.|+++.|...|.||++|...|.|.+|.-+... ....|.+|. ..|..|.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45689999999999999999999999999755322 222344442 4588899976644 5667
Q ss_pred EeCCCcEEEEeCCCCCc-----------------------------------------eeEEe-ccCCCceEEEEecCCC
Q 002591 683 SSFDKTVRVWDADNPGY-----------------------------------------SLRTF-MGHSASVMSLDFHPNK 720 (903)
Q Consensus 683 gs~Dg~I~IWDl~~~~~-----------------------------------------~~~~~-~~h~~~V~sl~fsp~~ 720 (903)
.+.|++|++|.+..... +.+.+ ..|...|.+|.|..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 77899999998864210 01112 3577788899999887
Q ss_pred CeEEEEEeCCCcEEEEEcCCCe-eeE--Eeec--------CceeEEEecCC-CEEEEEEcCCeEEEEECCCCeE------
Q 002591 721 DDLICSCDGDGEIRYWSINNGS-CTR--VFKG--------GTAQMRFQPHL-GRYLAAAAENVVSILDAETQAC------ 782 (903)
Q Consensus 721 ~~ll~sgs~Dg~I~iwDi~t~~-~~~--~~~~--------~~~~v~~sp~~-~~ll~~s~dg~I~i~D~~t~~~------ 782 (903)
..+| ++ .|-.|.+|+++-.. +.. .++. -+++..|+|.. ..+...++.|.|++.|++....
T Consensus 185 et~l-Sa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLL-SA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heee-ec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 6555 44 48889999987432 111 1111 24556788866 5667778899999999984311
Q ss_pred EE----------EecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCC------------Cc---e
Q 002591 783 RL----------SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG------------NK---F 837 (903)
Q Consensus 783 ~~----------~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~------------~~---i 837 (903)
+. -+.+-...|..+.|+++|+||++-+.-+|+|||++..+ .++.++.-|. .. -
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeee
Confidence 11 11222356788999999999998877799999998764 3444443221 11 2
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEE
Q 002591 838 HSCVFHPTYPSLLVIGCYQSLELWN 862 (903)
Q Consensus 838 ~si~~sp~g~~l~t~s~dg~I~vwd 862 (903)
..|.|+.+.+.+++|+..+..-||-
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEEecCCcccccccccccceeeec
Confidence 3567888888899988877666665
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.3e-09 Score=117.46 Aligned_cols=201 Identities=14% Similarity=0.189 Sum_probs=145.0
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCceeEEecc---CCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeecC
Q 002591 675 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGG 750 (903)
Q Consensus 675 pdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~---h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~-~~~~~~~~ 750 (903)
+...++|....||.+||||..+ +.....|.. -++..++..| .+.-+. +.+... -
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~-~~~~~e~~p~~~~s~t~~~~~w--------------------~L~~~~s~~k~~~-~ 60 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAK-NQLQQEFAPIASLSGTCTYTKW--------------------GLSADYSPMKWLS-L 60 (541)
T ss_pred chhheEeecCCCCeEEEEEccC-ceeeeeeccchhccCcceeEEE--------------------EEEeccchHHHHh-H
Confidence 4456889999999999999987 333333321 1223333333 211110 000000 0
Q ss_pred ceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceE
Q 002591 751 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 827 (903)
Q Consensus 751 ~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~--~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i 827 (903)
......+.+...++.|...|.|.+|++..++....+. .|.+.|+++.++.+-..|.+++.| .+..|+.... ..+
T Consensus 61 ~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---~~~ 137 (541)
T KOG4547|consen 61 EKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---VII 137 (541)
T ss_pred HHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---eee
Confidence 0001112233457777888999999999999888876 599999999999988899999999 9999999765 677
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecC-----CCEEEEE-ecCCcEE
Q 002591 828 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE-----TGYVASA-SHDKFVK 900 (903)
Q Consensus 828 ~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spd-----g~~LaSg-s~DG~I~ 900 (903)
..+.+....+.+++++||+..+++++ +.|++||+++++++ ++.+|.++|+++.|..+ |.+|.++ ..+..|.
T Consensus 138 ~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~ 215 (541)
T KOG4547|consen 138 RIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGIT 215 (541)
T ss_pred eeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccccccee
Confidence 77777788899999999999888876 57999999999988 89999999999999877 6666554 4455566
Q ss_pred Ec
Q 002591 901 LW 902 (903)
Q Consensus 901 IW 902 (903)
+|
T Consensus 216 ~w 217 (541)
T KOG4547|consen 216 VW 217 (541)
T ss_pred EE
Confidence 66
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.4e-10 Score=134.35 Aligned_cols=208 Identities=17% Similarity=0.284 Sum_probs=165.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----Cce
Q 002591 677 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTA 752 (903)
Q Consensus 677 g~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~----~~~ 752 (903)
+..+..+..++...-|..+..+ ..++.+-..|.++.-||...+++ ||+.||.|++|....+..+..++. .+.
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred cccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence 3444555556666666655322 33344566788898899888666 999999999999998887777653 456
Q ss_pred eEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC---C-eEEEEECCCCCCcceEE
Q 002591 753 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVH 828 (903)
Q Consensus 753 ~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~---d-~I~iwdl~s~~~~~~i~ 828 (903)
.+.|+..|+.+-++..||.+.+|.+. .++......|....+.+.|-- ..+++.+. + .+.+||..-.....+++
T Consensus 2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 68899999999999999999999987 677777888999999999884 66666543 3 89999987666556666
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 829 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 829 ~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.+|...++++++.|....|++|+.+|.|++||++-.+++ .+.. ++ ...+|++|+..|.|+||+
T Consensus 2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 789999999999999999999999999999999887766 3332 44 567899999999999996
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-07 Score=119.56 Aligned_cols=239 Identities=13% Similarity=0.144 Sum_probs=159.7
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEecc-C-------------CCCeEEEEECCCCCEEEEEeC-CCcEE
Q 002591 627 ICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEE-H-------------SSLITDVRFSPSMPRLATSSF-DKTVR 690 (903)
Q Consensus 627 ~~l~fspd-g~~Latgs~Dg~V~vWd~~t~~~~~~l~~-h-------------~~~V~~l~fspdg~~Lasgs~-Dg~I~ 690 (903)
..++++++ +.++++-..++.|++||.. +..+..+.. . -..-..|++.+++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 45788875 5566666778899999976 444444332 1 123578999998887766654 57799
Q ss_pred EEeCCCCCceeEEeccC-----------------CCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-----
Q 002591 691 VWDADNPGYSLRTFMGH-----------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----- 748 (903)
Q Consensus 691 IWDl~~~~~~~~~~~~h-----------------~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~----- 748 (903)
++|+.+ + .+.++.+- -..-+.++|+|+++.++++...++.|++||..++.......
T Consensus 650 ~id~~~-~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVN-E-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCC-C-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 999876 2 34444221 11235799999777788788889999999998775432110
Q ss_pred ------------cCceeEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecC-------------C--------CCCeE
Q 002591 749 ------------GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-------------H--------TKPID 794 (903)
Q Consensus 749 ------------~~~~~v~~sp~~~~ll~~s~-dg~I~i~D~~t~~~~~~l~~-------------h--------~~~V~ 794 (903)
.....++++++++.++++.. ++.|++||+.++.......+ + -..-.
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12335889999986665554 68999999987653221100 0 01235
Q ss_pred EEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE----------eecCCCceEEEEEeCCCCEEEEEECCCeEEEEEC
Q 002591 795 SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE----------LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 863 (903)
Q Consensus 795 sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~----------~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl 863 (903)
.++|+++|.++++...+ .|++||..++........ ....-.....++++++|+.+++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 78999999987777777 999999976522111100 0111235678899999998777788899999999
Q ss_pred CCCcE
Q 002591 864 SENKT 868 (903)
Q Consensus 864 ~~~~~ 868 (903)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 98765
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-07 Score=120.19 Aligned_cols=232 Identities=11% Similarity=0.099 Sum_probs=154.5
Q ss_pred EEEEECCC-CCEEEEEeCCCcEEEEeCCCCCceeEEecc--C------------CCceEEEEecCCCCeEEEEEeCCCcE
Q 002591 669 TDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMG--H------------SASVMSLDFHPNKDDLICSCDGDGEI 733 (903)
Q Consensus 669 ~~l~fspd-g~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~--h------------~~~V~sl~fsp~~~~ll~sgs~Dg~I 733 (903)
..++++++ +.++++-+.++.|++||... ..+..+.+ . -.....|++.++++.++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788765 55666667788999999864 33333322 1 12357799998877666555566889
Q ss_pred EEEEcCCCeeeEEee-------------------cCceeEEEecCCCEEEE-EEcCCeEEEEECCCCeEEEEecCC----
Q 002591 734 RYWSINNGSCTRVFK-------------------GGTAQMRFQPHLGRYLA-AAAENVVSILDAETQACRLSLQGH---- 789 (903)
Q Consensus 734 ~iwDi~t~~~~~~~~-------------------~~~~~v~~sp~~~~ll~-~s~dg~I~i~D~~t~~~~~~l~~h---- 789 (903)
+++|+.++....... .....++++++++.+++ ...++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 999988765332211 11245889996655544 4567899999998875432 2111
Q ss_pred -----------CCCeEEEEEcCCCCEEEEE-eCC-eEEEEECCCCCCcceE----------EEeec--------CCCceE
Q 002591 790 -----------TKPIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECV----------HELSC--------NGNKFH 838 (903)
Q Consensus 790 -----------~~~V~sl~~spdg~~lasg-s~d-~I~iwdl~s~~~~~~i----------~~~~~--------~~~~i~ 838 (903)
-.....|+|+|++..|+++ +.+ .|++||+.++...... ..+.. ......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 1234569999999855444 444 9999999865321000 00000 011245
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCcEEEEccC--------------CCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 839 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH--------------EGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 839 si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~~h--------------~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.++++++|..+++-..++.|++||..++.+..+.+. -.....++++++|+++++-+.+++|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 789999999877778889999999998877654432 23578899999999999888999999996
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.4e-08 Score=110.93 Aligned_cols=213 Identities=15% Similarity=0.168 Sum_probs=156.9
Q ss_pred ccccCcceeeeeEeecCCCCeEEEEEcCCC------------CEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEE
Q 002591 606 DVSQGFSFKEANSVRASTSKVICCHFSSDG------------KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 673 (903)
Q Consensus 606 d~~~~~~~~~~~~l~~H~~~V~~l~fspdg------------~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~f 673 (903)
.+.+..+++.+.+++-|...|+.|.|.|-. -+||++...|.|.|||+..+..+..+..|.++|.+++|
T Consensus 38 ~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W 117 (1062)
T KOG1912|consen 38 SVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCW 117 (1062)
T ss_pred EEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheee
Confidence 344455888999999999999999998621 26788888899999999999999999999999999999
Q ss_pred CC---CC-CEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCC-------Ce
Q 002591 674 SP---SM-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-------GS 742 (903)
Q Consensus 674 sp---dg-~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t-------~~ 742 (903)
-+ +. ..|++-....+|.+|+.++ +..+..+........|+.+.|-..+-++.-+..|.|.+-+.-. ++
T Consensus 118 ~~~rd~Srd~LlaIh~ss~lvLwntdt-G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk 196 (1062)
T KOG1912|consen 118 VPARDDSRDVLLAIHGSSTLVLWNTDT-GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGK 196 (1062)
T ss_pred eeccCcchheeEEecCCcEEEEEEccC-CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCce
Confidence 65 33 3566666788999999998 5556666655566778999987666666666678777776532 11
Q ss_pred eeEEeec----------------------------CceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeE
Q 002591 743 CTRVFKG----------------------------GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPID 794 (903)
Q Consensus 743 ~~~~~~~----------------------------~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~ 794 (903)
....-.. -...++|+|.-+.++.......+.|+|++-..++..+.-..+.+.
T Consensus 197 ~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~ak 276 (1062)
T KOG1912|consen 197 EFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAK 276 (1062)
T ss_pred eEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcc
Confidence 1111000 011255788888888888899999999998888887776677777
Q ss_pred EEEEcCCCC--EEEEEeCC-eEEEEECC
Q 002591 795 SVCWDPSGE--LLASVSED-SVRVWTVG 819 (903)
Q Consensus 795 sl~~spdg~--~lasgs~d-~I~iwdl~ 819 (903)
-+.|-|+++ .|++...+ .+.||-.+
T Consensus 277 fv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 277 FVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred eeEeccCCCcceEEEEecCCeEEEEEee
Confidence 777877665 66666666 77777544
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-07 Score=107.68 Aligned_cols=190 Identities=11% Similarity=0.093 Sum_probs=130.3
Q ss_pred CeEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEE-eCC--CcEEEEeCCCC
Q 002591 625 KVICCHFSSDGKL-LATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFD--KTVRVWDADNP 697 (903)
Q Consensus 625 ~V~~l~fspdg~~-Latgs~D---g~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~D--g~I~IWDl~~~ 697 (903)
.+...+|+|||+. ++..+.+ ..|+++|+.+++..... ...+.+....|+|||+.|+.. +.+ ..|.++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~- 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT- 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC-
Confidence 7889999999984 6654443 46899999887655444 355667788999999877654 333 4677788875
Q ss_pred CceeEEeccCCCceEEEEecCCCCeEEEEEeCCC--cEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcC------
Q 002591 698 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE------ 769 (903)
Q Consensus 698 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg--~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~d------ 769 (903)
+. .+.+..+........|+|||+.++++....+ .|+++|+.+++..+....+.....|+|+++.++.....
T Consensus 267 g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 267 KT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred Cc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccC
Confidence 33 4445544443455789999998887776555 57888888887755443332346899999998887754
Q ss_pred ---CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECC
Q 002591 770 ---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVG 819 (903)
Q Consensus 770 ---g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d----~I~iwdl~ 819 (903)
..|.++|+.++.... +... .......|+|||+.|+..... .+.++++.
T Consensus 346 ~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 368888998886543 3322 233468899999976655432 36666664
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-09 Score=129.91 Aligned_cols=189 Identities=14% Similarity=0.288 Sum_probs=157.7
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc-CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 002591 618 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 696 (903)
Q Consensus 618 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~ 696 (903)
.++.|-..|.++.-+|...+.+||+.||.|++|....+..+..++. ....|+.+.|+..|..+..+..||.+.+|.+.
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 3455677899999999999999999999999999998888888763 34889999999999999999999999999997
Q ss_pred CCceeEEeccCCCceEEEEecCCCCeEEEEEe---CCCcEEEEEcCCC---eeeE-EeecCceeEEEecCCCEEEEEEcC
Q 002591 697 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNG---SCTR-VFKGGTAQMRFQPHLGRYLAAAAE 769 (903)
Q Consensus 697 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs---~Dg~I~iwDi~t~---~~~~-~~~~~~~~v~~sp~~~~ll~~s~d 769 (903)
.++......|.....++.|.. .++++++ .++.+.+||..-. .++. .+.++.+++.+.|....+++|+.+
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred -CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence 467888889999999999985 3565654 4789999997532 2333 345678999999999999999999
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002591 770 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 821 (903)
Q Consensus 770 g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~ 821 (903)
|.|++||++..+.++.+.. ++ ...+|++++.. .|+||++...
T Consensus 2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 9999999999888877763 55 56788888877 9999999765
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-09 Score=121.03 Aligned_cols=218 Identities=20% Similarity=0.290 Sum_probs=157.2
Q ss_pred cccccccCcceeeeeEeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-ceeEEeccCCCCeEEEEECCCCCEE
Q 002591 603 RGMDVSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRL 680 (903)
Q Consensus 603 ~~~d~~~~~~~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~V~vWd~~t~-~~~~~l~~h~~~V~~l~fspdg~~L 680 (903)
.+|.+.+...-.....+.+|+..|+.+-|.+.. ..||+++.|-.|..||+.+. ..+..+..-...-.-|+|+-....+
T Consensus 94 iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~v 173 (1081)
T KOG0309|consen 94 IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNV 173 (1081)
T ss_pred hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcch
Confidence 345555555555667788999999999999865 48999999999999999854 4455555555667889998877777
Q ss_pred EEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeE--Ee--ecCceeEEE
Q 002591 681 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VF--KGGTAQMRF 756 (903)
Q Consensus 681 asgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~--~~--~~~~~~v~~ 756 (903)
.+.+....|+|||++.++.++..+++|...|..++|.......+.+++.||+|++||........ .. +..+-.-++
T Consensus 174 lasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~ 253 (1081)
T KOG0309|consen 174 LASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY 253 (1081)
T ss_pred hhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccc
Confidence 77777888999999998899999999999999999987655567799999999999987543221 11 122333344
Q ss_pred ecCCCEEEEE-----------EcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcC--------CCC--EEEEEeCC-eE
Q 002591 757 QPHLGRYLAA-----------AAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDP--------SGE--LLASVSED-SV 813 (903)
Q Consensus 757 sp~~~~ll~~-----------s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~sp--------dg~--~lasgs~d-~I 813 (903)
.|-+.-++.- -.++....|+..++ ..++.|.||.+.|...-|-. +.+ -|++=+.| ++
T Consensus 254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l 333 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL 333 (1081)
T ss_pred cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence 4444222221 11223333444443 68899999999887666543 222 68899999 99
Q ss_pred EEEECCC
Q 002591 814 RVWTVGS 820 (903)
Q Consensus 814 ~iwdl~s 820 (903)
++|-+.+
T Consensus 334 rlWpI~~ 340 (1081)
T KOG0309|consen 334 RLWPIDS 340 (1081)
T ss_pred EeeeccH
Confidence 9998864
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.4e-07 Score=103.29 Aligned_cols=224 Identities=12% Similarity=0.105 Sum_probs=144.9
Q ss_pred CcEEEEECCCCceeEEeccCCCCeEEEEECCCCCE-EEEEeCC---CcEEEEeCCCCCceeEEeccCCCceEEEEecCCC
Q 002591 645 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 720 (903)
Q Consensus 645 g~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~D---g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~ 720 (903)
..|.+-|.+... .+.+.... .+...+|+|||+. ++..+.+ ..|.++|+.+ +.. +.+....+.+....|+||+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~~-~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GKK-EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC-CcE-EEEecCCCcEEeeEECCCC
Confidence 345555554333 33343333 7889999999984 6654443 4588899976 433 3333355566778899999
Q ss_pred CeEEEEEeCC--CcEEEEEcCCCeeeEEeecC--ceeEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCe
Q 002591 721 DDLICSCDGD--GEIRYWSINNGSCTRVFKGG--TAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPI 793 (903)
Q Consensus 721 ~~ll~sgs~D--g~I~iwDi~t~~~~~~~~~~--~~~v~~sp~~~~ll~~s~d-g--~I~i~D~~t~~~~~~l~~h~~~V 793 (903)
..++++.+.+ ..|.++|+.+++........ .....|+|++..++..+.. + .|+++|+.+++....... ...
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 9888777655 46888888887755433322 3456799999988887753 2 788889988876443322 111
Q ss_pred EEEEEcCCCCEEEEEeC--------C--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCC---eEEE
Q 002591 794 DSVCWDPSGELLASVSE--------D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLEL 860 (903)
Q Consensus 794 ~sl~~spdg~~lasgs~--------d--~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg---~I~v 860 (903)
...|+|||++|+..+. + .|.+.|+.++.. ..+... .......|+|||+.|+....++ .|.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 2489999997766543 2 577788876632 222222 2233578999999988877553 5778
Q ss_pred EECCCCcEEEEccCCCCEEE
Q 002591 861 WNMSENKTMTLTAHEGLIAA 880 (903)
Q Consensus 861 wdl~~~~~~~~~~h~~~V~s 880 (903)
+++.......+....+.|..
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~ 416 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQS 416 (419)
T ss_pred EecCCCeeEEeecCCCccCC
Confidence 88877766666554444443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-06 Score=95.78 Aligned_cols=137 Identities=14% Similarity=0.173 Sum_probs=97.0
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceE
Q 002591 761 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFH 838 (903)
Q Consensus 761 ~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~ 838 (903)
+.+++..+-|...|++.-.+-.+. .+|...|.-..+.-+++-++.|..| .+-|||.+++ .++.+...-+.|.
T Consensus 332 Gd~ia~VSRGkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~----e~kr~e~~lg~I~ 405 (668)
T COG4946 332 GDYIALVSRGKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG----EVKRIEKDLGNIE 405 (668)
T ss_pred CcEEEEEecCcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc----eEEEeeCCccceE
Confidence 333333344444444443333222 2355567666676666666666655 8899998775 3445555577899
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCcEEEEc-cCCCCEEEEEEecCCCEEEEEecCCc----EEEcC
Q 002591 839 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT-AHEGLIAALAVSTETGYVASASHDKF----VKLWK 903 (903)
Q Consensus 839 si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~-~h~~~V~sl~~spdg~~LaSgs~DG~----I~IWd 903 (903)
++..+++|++++++.....|.++|+.++....+. ...+.|+.++|+|++++||-+--+|. |+|||
T Consensus 406 av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklyd 475 (668)
T COG4946 406 AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYD 475 (668)
T ss_pred EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEe
Confidence 9999999999999988899999999999987544 56788999999999999998876664 55553
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-09 Score=125.69 Aligned_cols=262 Identities=16% Similarity=0.188 Sum_probs=180.9
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCC--cE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TV 689 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--~I 689 (903)
.|+..++|+.|+...+|++|+-+.++|++|+..|.|++|++.+|.......+|..+|+.|.=+.+|..+++.+.-. -.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 5788889999999999999999999999999999999999999999999999999999999999999877765533 47
Q ss_pred EEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-------CceeEEEecCCCE
Q 002591 690 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-------GTAQMRFQPHLGR 762 (903)
Q Consensus 690 ~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~-------~~~~v~~sp~~~~ 762 (903)
.+|++.+.....++|.+ -.++.|+.....-+ .|.....+.+||+.++..+.++-. ..+...|+|.+..
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 89999875555566653 44577875533222 344446788999999876655322 2355778888776
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEE
Q 002591 763 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF 842 (903)
Q Consensus 763 ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~ 842 (903)
++- || .+||++..+.++.|......+ .-.|+|.|.-++.-+ .|||+++......+..+ .-..+.|
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS----EIwD~RTF~lLh~VP~L-----dqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS----EIWDMRTFKLLHSVPSL-----DQCAVTF 1309 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec----hhhhhHHHHHHhcCccc-----cceEEEe
Confidence 653 33 579999988887776544222 346999999777765 58999987332222221 2245567
Q ss_pred eCCCCEEEEEEC--C---------------CeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEE
Q 002591 843 HPTYPSLLVIGC--Y---------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASA 893 (903)
Q Consensus 843 sp~g~~l~t~s~--d---------------g~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSg 893 (903)
+..|..++..-. | ...+-||...-..+........|..+|-.+...+++..
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 777765544320 0 02333443333334333445566666766666666553
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.9e-07 Score=93.56 Aligned_cols=221 Identities=8% Similarity=-0.010 Sum_probs=149.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCce
Q 002591 676 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTA 752 (903)
Q Consensus 676 dg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~---~~~~ 752 (903)
...+||.|+..|...+|...+....+.....|...|+-+.=..+...-+..++.|.++++.+++-+....... ....
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 3458999999999999999875544555554544443222212222233468889999998887654333222 2367
Q ss_pred eEEEecCCCEEEEEEcCCeEEEEECCCC-eE-EE-EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc--e
Q 002591 753 QMRFQPHLGRYLAAAAENVVSILDAETQ-AC-RL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE--C 826 (903)
Q Consensus 753 ~v~~sp~~~~ll~~s~dg~I~i~D~~t~-~~-~~-~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~--~ 826 (903)
.+.+++++.+.++.+....|..|.+... +. +. .....++.-.+..|+.....+|++..| ++.|||++...... .
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 8899999999999999999999987654 22 22 223344556788999999999999999 99999998763321 1
Q ss_pred EEEeecCCCceEEEEEeCCCC--EEEEEECCCeEEEEECCCCcEEE--------EccCCC-CEEEEEEecCCCEEEEEec
Q 002591 827 VHELSCNGNKFHSCVFHPTYP--SLLVIGCYQSLELWNMSENKTMT--------LTAHEG-LIAALAVSTETGYVASASH 895 (903)
Q Consensus 827 i~~~~~~~~~i~si~~sp~g~--~l~t~s~dg~I~vwdl~~~~~~~--------~~~h~~-~V~sl~~spdg~~LaSgs~ 895 (903)
...-..|.+.+..|.|++.|. .|+..-.-+.+.|.|+++++-.. ...|.. .|..-.|+.++.-+.+.++
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 223345788999999998664 34554455789999999887541 122333 3777888877766555544
Q ss_pred C
Q 002591 896 D 896 (903)
Q Consensus 896 D 896 (903)
+
T Consensus 323 ~ 323 (344)
T KOG4532|consen 323 L 323 (344)
T ss_pred h
Confidence 3
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-07 Score=108.37 Aligned_cols=237 Identities=16% Similarity=0.210 Sum_probs=166.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCC------------CCEEEEEeCCCcEE
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS------------MPRLATSSFDKTVR 690 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspd------------g~~Lasgs~Dg~I~ 690 (903)
...-.++.|++.| +||.|+. ..|.|.|..+.+.+..++.|...|+.|+|.|. .-+||++...|.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3346788999988 7888875 47999999999999999999999999999873 12577778899999
Q ss_pred EEeCCCCCceeEEeccCCCceEEEEecCC---CCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceeEEEecCC-CEE
Q 002591 691 VWDADNPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHL-GRY 763 (903)
Q Consensus 691 IWDl~~~~~~~~~~~~h~~~V~sl~fsp~---~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~---~~~v~~sp~~-~~l 763 (903)
|||... ...+..+..|.++|..++|-+. .++++++-....+|.+|+..+|+....+... ..++.+.|-+ ..+
T Consensus 93 l~d~~~-~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 93 LVDFVL-ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEEehh-hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceE
Confidence 999987 6667778889999999999763 4456767777899999999999887766532 3446677765 456
Q ss_pred EEEEcCCeEEEEECCC-------CeEEEEecCCCC----------------C---------eEEEEEcCCCC-EEEEEeC
Q 002591 764 LAAAAENVVSILDAET-------QACRLSLQGHTK----------------P---------IDSVCWDPSGE-LLASVSE 810 (903)
Q Consensus 764 l~~s~dg~I~i~D~~t-------~~~~~~l~~h~~----------------~---------V~sl~~spdg~-~lasgs~ 810 (903)
.+.+..|.|.+.+.-- ++....-..|.+ . ...++|+|.-+ .++..-.
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p 251 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP 251 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence 6666677766665321 222222222222 0 11256777655 3333434
Q ss_pred CeEEEEECCCCCCcceEEEeecCCCceEEEEEeC--CCCEEEEEECCCeEEEEECCC
Q 002591 811 DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP--TYPSLLVIGCYQSLELWNMSE 865 (903)
Q Consensus 811 d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp--~g~~l~t~s~dg~I~vwdl~~ 865 (903)
..+.|+|++-. .++.......+.+.-+.+-| ....|++...||.+.||-.+.
T Consensus 252 rellv~dle~~---~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 252 RELLVFDLEYE---CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred cceEEEcchhh---ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 48999999654 45555544444444445555 456799999999999997654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-06 Score=107.58 Aligned_cols=274 Identities=12% Similarity=0.201 Sum_probs=174.8
Q ss_pred CCeEEEEEcCCCCEEEE--EeCCC--cEEEEECCCC---ceeEEec-----cCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 002591 624 SKVICCHFSSDGKLLAT--GGHDK--KAVLWHTDTL---KSKTNLE-----EHSSLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 624 ~~V~~l~fspdg~~Lat--gs~Dg--~V~vWd~~t~---~~~~~l~-----~h~~~V~~l~fspdg~~Lasgs~Dg~I~I 691 (903)
..+...+|......+.. +..+. .|.+...... +.+..+. ...+.|.++.|.++...|+.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 35667777765543333 32222 2333333222 2333333 34578999999999999999999999999
Q ss_pred E----eCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcC---------------CCeee--------
Q 002591 692 W----DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN---------------NGSCT-------- 744 (903)
Q Consensus 692 W----Dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~---------------t~~~~-------- 744 (903)
+ +..+ ..+.....-...|.+++|+||.. +++....+++|.+.+.. ..+.+
T Consensus 102 ~~~~~~~~~--~~~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe 178 (928)
T PF04762_consen 102 VREDPDPDE--DEIEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKE 178 (928)
T ss_pred EEccCCCCC--ceeEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCccc
Confidence 9 5543 33444444567899999999977 44556667777665421 00000
Q ss_pred EE---------------------------eecCceeEEEecCCCEEEEEEc---C---CeEEEEECCCCeEEEEecCCCC
Q 002591 745 RV---------------------------FKGGTAQMRFQPHLGRYLAAAA---E---NVVSILDAETQACRLSLQGHTK 791 (903)
Q Consensus 745 ~~---------------------------~~~~~~~v~~sp~~~~ll~~s~---d---g~I~i~D~~t~~~~~~l~~h~~ 791 (903)
.. .......++|-.||.+|++.+. . ..|+||+-+ |....+-+.-.+
T Consensus 179 TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~g 257 (928)
T PF04762_consen 179 TQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDG 257 (928)
T ss_pred CccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCC
Confidence 00 1113345778899999888775 2 478999876 665555444444
Q ss_pred CeEEEEEcCCCCEEEEEeC---C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCc
Q 002591 792 PIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 867 (903)
Q Consensus 792 ~V~sl~~spdg~~lasgs~---d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~ 867 (903)
--.+++|.|.|++||+.-. . .|.+|.-+..........+......|..+.|++++..|++...|. |.+|-..+..
T Consensus 258 Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 258 LEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred ccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 4567899999999998865 2 677777544333333333334567899999999999999877555 9999998876
Q ss_pred EE---EEc-cCCCCEEEEEEecCCC-EEEEEecCCcEEEc
Q 002591 868 TM---TLT-AHEGLIAALAVSTETG-YVASASHDKFVKLW 902 (903)
Q Consensus 868 ~~---~~~-~h~~~V~sl~~spdg~-~LaSgs~DG~I~IW 902 (903)
.. .+. .....+..+.|+|... .|...+.+|.+.++
T Consensus 337 WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~ 376 (928)
T PF04762_consen 337 WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY 376 (928)
T ss_pred EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence 44 222 2334455699998654 46666665666543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-06 Score=91.70 Aligned_cols=213 Identities=15% Similarity=0.052 Sum_probs=137.8
Q ss_pred CCcEEEEECCCCceeEEeccC--CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCC
Q 002591 644 DKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 721 (903)
Q Consensus 644 Dg~V~vWd~~t~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 721 (903)
+|.|..||..+++.+.....- .....+. ...++.++++++.++.|+.||..+ ++.+..+.. ...+...... .++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~-~~~~~~~~~~-~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKT-GKVLWRFDL-PGPISGAPVV-DGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTT-SEEEEEEEC-SSCGGSGEEE-ETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCC-CCEEEEeec-cccccceeee-ccc
Confidence 689999999999998887541 1222211 223566788888999999999988 666655553 2221111111 234
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeeEEe-ecC------ceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCC--
Q 002591 722 DLICSCDGDGEIRYWSINNGSCTRVF-KGG------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP-- 792 (903)
Q Consensus 722 ~ll~sgs~Dg~I~iwDi~t~~~~~~~-~~~------~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~-- 792 (903)
.++ ++..|+.|+.+|.++++.+..+ ... .........++.++++..++.|..+|+++|+.+.........
T Consensus 78 ~v~-v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 78 RVY-VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EEE-EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred ccc-cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 344 5667889999999999988774 321 122334444788999999999999999999998888764422
Q ss_pred --------eEEEEEcCCCCEEEEEeCC-e-EEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEE
Q 002591 793 --------IDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 862 (903)
Q Consensus 793 --------V~sl~~spdg~~lasgs~d-~-I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwd 862 (903)
+..-....++ .++.++.+ . +.+ |+.+++ .+.... ...+.. .....+..|++++.++.|.+||
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~---~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGE---KLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTE---EEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCC---EEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 1222223344 55555544 4 555 998874 222222 222222 2456778888888999999999
Q ss_pred CCCCcEE
Q 002591 863 MSENKTM 869 (903)
Q Consensus 863 l~~~~~~ 869 (903)
+++++.+
T Consensus 229 ~~tG~~~ 235 (238)
T PF13360_consen 229 LKTGKVV 235 (238)
T ss_dssp TTTTEEE
T ss_pred CCCCCEE
Confidence 9999876
|
... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-06 Score=99.90 Aligned_cols=252 Identities=11% Similarity=0.027 Sum_probs=155.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCce---
Q 002591 635 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV--- 711 (903)
Q Consensus 635 g~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V--- 711 (903)
+..++.++.++.|+.+|.++++.+............... .+..+++++.++.|..+|.++ ++.+..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESD-GAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccC-CCEeeeecCCCCccccc
Confidence 456777888999999999999988877654322211122 234677788899999999988 55555544221100
Q ss_pred --EEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc----------eeEEEec--CCCEEEEEEcCCeEEEEEC
Q 002591 712 --MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----------AQMRFQP--HLGRYLAAAAENVVSILDA 777 (903)
Q Consensus 712 --~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~----------~~v~~sp--~~~~ll~~s~dg~I~i~D~ 777 (903)
.+-... ++. ++.++.+|.+..+|..+++.+..+.... ..+...| .++.+++++.++.+..+|.
T Consensus 197 ~~~sP~v~--~~~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 197 GESAPATA--FGG-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCCEEE--CCE-EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 011111 233 4467778999999999988665543110 0011111 3577888888999999999
Q ss_pred CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEECC
Q 002591 778 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCY 855 (903)
Q Consensus 778 ~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~-~~~~i~si~~sp~g~~l~t~s~d 855 (903)
.+++.+...... ....+.. .+..|+.++.+ .+..+|..+++. +-.... ......+..+ .+.+|++++.+
T Consensus 274 ~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~---~W~~~~~~~~~~~sp~v--~~g~l~v~~~~ 344 (394)
T PRK11138 274 RSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVE---LWSQSDLLHRLLTAPVL--YNGYLVVGDSE 344 (394)
T ss_pred CCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcE---EEcccccCCCcccCCEE--ECCEEEEEeCC
Confidence 999887765421 1112222 34555555555 999999987742 221111 0111222222 25678899999
Q ss_pred CeEEEEECCCCcEE-EEccCCCCEE-EEEEecCCCEEEEEecCCcEEEcC
Q 002591 856 QSLELWNMSENKTM-TLTAHEGLIA-ALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 856 g~I~vwdl~~~~~~-~~~~h~~~V~-sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
|.|+++|..+++.+ ........+. ...+ .+..|+.++.||.|+.++
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 99999999999987 3332323233 2233 245788889999998764
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.2e-06 Score=87.01 Aligned_cols=216 Identities=9% Similarity=0.056 Sum_probs=138.2
Q ss_pred EEEEECC-CCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe
Q 002591 669 TDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 747 (903)
Q Consensus 669 ~~l~fsp-dg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~ 747 (903)
.+++|.+ ++.++++-...+.|+.|+..+ +. ...+.... ...+++...++.++ .+.. +.+.++|+.+++....+
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~-~~-~~~~~~~~--~~G~~~~~~~g~l~-v~~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDT-GE-VEVIDLPG--PNGMAFDRPDGRLY-VADS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTT-TE-EEEEESSS--EEEEEEECTTSEEE-EEET-TCEEEEETTTTEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCC-Ce-EEEEecCC--CceEEEEccCCEEE-EEEc-CceEEEecCCCcEEEEe
Confidence 3678887 565666666789999999987 32 33333222 66777773335455 4554 45566699998755443
Q ss_pred ec--------CceeEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe-C
Q 002591 748 KG--------GTAQMRFQPHLGRYLAAAAE--------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-E 810 (903)
Q Consensus 748 ~~--------~~~~v~~sp~~~~ll~~s~d--------g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs-~ 810 (903)
.. ..+.+++.++++.+++.... +.|+.++.. ++...... .-...+.|+|+|+++.|+.+. .
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccc
Confidence 32 24568899998866665543 568888888 55444333 345578999999999776554 4
Q ss_pred C-eEEEEECCCCCC-cc---eEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEe
Q 002591 811 D-SVRVWTVGSGSE-GE---CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 884 (903)
Q Consensus 811 d-~I~iwdl~s~~~-~~---~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~s 884 (903)
. .|..|++..... .. .+..+.......-.+++..+|+.+++....+.|.++|.. ++.+ .+......+++++|.
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 4 888998864322 11 222223323347889999999988877788999999998 6665 444444689999994
Q ss_pred -cCCCEEEEE
Q 002591 885 -TETGYVASA 893 (903)
Q Consensus 885 -pdg~~LaSg 893 (903)
++.+.|+..
T Consensus 234 g~~~~~L~vT 243 (246)
T PF08450_consen 234 GPDGKTLYVT 243 (246)
T ss_dssp STTSSEEEEE
T ss_pred CCCCCEEEEE
Confidence 565554443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.8e-09 Score=113.10 Aligned_cols=174 Identities=17% Similarity=0.235 Sum_probs=121.9
Q ss_pred eEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCC------ceeEEeccCCCceEEEEecCCCCeEEEEEeCCC
Q 002591 658 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 731 (903)
Q Consensus 658 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg 731 (903)
+..+.+|...|..+.--.+.+-+++++.|++|++|.++..+ .|..++..|+.+|.++.|..+.+ .+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence 45677999999999888888899999999999999997543 35678889999999999998754 34344 89
Q ss_pred cEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEE-eC
Q 002591 732 EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-SE 810 (903)
Q Consensus 732 ~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasg-s~ 810 (903)
.|.+||.--++.+.... +.|. .+..+.|.|+. +-+..+++.+ +.
T Consensus 805 giHlWDPFigr~Laq~~-------dapk---------------------------~~a~~~ikcl~-nv~~~iliAgcsa 849 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQME-------DAPK---------------------------EGAGGNIKCLE-NVDRHILIAGCSA 849 (1034)
T ss_pred cceeecccccchhHhhh-------cCcc---------------------------cCCCceeEecc-cCcchheeeeccc
Confidence 99999976655433211 1111 01112222221 1123344444 44
Q ss_pred C-eEEEEECCCCCCcceEEEe--ecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE
Q 002591 811 D-SVRVWTVGSGSEGECVHEL--SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 869 (903)
Q Consensus 811 d-~I~iwdl~s~~~~~~i~~~--~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~ 869 (903)
. +|+++|.+..+-...++.. .+....+.+++..+.|++++++-.+|.|.+.|.++|+++
T Consensus 850 eSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 850 ESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred hhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence 5 8999999887433333322 223456889999999999999999999999999999977
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-05 Score=84.15 Aligned_cols=214 Identities=18% Similarity=0.203 Sum_probs=138.3
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCCceeEEec
Q 002591 628 CCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS-PSMPRLATSSFDKTVRVWDADNPGYSLRTFM 705 (903)
Q Consensus 628 ~l~fsp-dg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fs-pdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~ 705 (903)
+++|.+ ++.++++....+.|+.|+..++.... +.... ...+++. +++ .|+.+..++ +.++|+.+ +.....+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~-g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDT-GKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTT-TEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCC-CcEEEEee
Confidence 678888 67777777778999999988765543 32222 6667776 564 555555544 66669887 33322222
Q ss_pred c-----CCCceEEEEecCCCCeEEEEEeCC--------CcEEEEEcCCCeeeEEee--cCceeEEEecCCCEEEEEE-cC
Q 002591 706 G-----HSASVMSLDFHPNKDDLICSCDGD--------GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAA-AE 769 (903)
Q Consensus 706 ~-----h~~~V~sl~fsp~~~~ll~sgs~D--------g~I~iwDi~t~~~~~~~~--~~~~~v~~sp~~~~ll~~s-~d 769 (903)
. .....+++++.++|+ ++++.... |.|..++.. ++...... ...+.++|+++++.++++. ..
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 1 345688999999987 55455433 567788877 55444443 3456799999999877654 57
Q ss_pred CeEEEEECCCCe-------EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEE
Q 002591 770 NVVSILDAETQA-------CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 841 (903)
Q Consensus 770 g~I~i~D~~t~~-------~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~ 841 (903)
+.|..||+.... ....+....+....++++.+|++.++.... .|.++|.. + +.+..+......+++|+
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCA 231 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEE
Confidence 889999885321 122222222347889999999977766555 99999976 4 45555555556899999
Q ss_pred Ee-CCCCEEEEEE
Q 002591 842 FH-PTYPSLLVIG 853 (903)
Q Consensus 842 ~s-p~g~~l~t~s 853 (903)
|. ++.+.|++.+
T Consensus 232 fgg~~~~~L~vTt 244 (246)
T PF08450_consen 232 FGGPDGKTLYVTT 244 (246)
T ss_dssp EESTTSSEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 94 6767776654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-07 Score=97.92 Aligned_cols=249 Identities=15% Similarity=0.193 Sum_probs=150.6
Q ss_pred EEEEECCCCceeEEeccCCCCeEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEE
Q 002591 647 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 725 (903)
Q Consensus 647 V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 725 (903)
|++.+..+.+....+..|...|.+++|+|..+ ++..++.+.+|.|.|+++ ..++..+..+ ..+++++|.-+..++|+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheecc-CCceeeeeccCCcceeE
Confidence 66666666666777788999999999999887 788999999999999998 6667777777 88999999999999999
Q ss_pred EEeCCCcEEEEEcCCCeeeE-Eee-----cCceeE------EEecCCCEEEEEEcCCeEEEEEC----CCCeEEEEecCC
Q 002591 726 SCDGDGEIRYWSINNGSCTR-VFK-----GGTAQM------RFQPHLGRYLAAAAENVVSILDA----ETQACRLSLQGH 789 (903)
Q Consensus 726 sgs~Dg~I~iwDi~t~~~~~-~~~-----~~~~~v------~~sp~~~~ll~~s~dg~I~i~D~----~t~~~~~~l~~h 789 (903)
.|...|.|.|||++..+-.. .+. .++..+ ...+.++.++++..+- ..|+. ....++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l--~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVL--QFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhh--hhhhhhccccCCCcccccC-C
Confidence 99999999999998654211 111 111112 2334445555544432 23322 2222322222 3
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCC----eEEE----EECCCCCCcceEEEeecC-CCce------EEEEEeCCCCEEEEEE
Q 002591 790 TKPIDSVCWDPSGE-LLASVSED----SVRV----WTVGSGSEGECVHELSCN-GNKF------HSCVFHPTYPSLLVIG 853 (903)
Q Consensus 790 ~~~V~sl~~spdg~-~lasgs~d----~I~i----wdl~s~~~~~~i~~~~~~-~~~i------~si~~sp~g~~l~t~s 853 (903)
.+.+.++.+++..+ +|++.-.+ .++. -|.+.+.. ....-..+ +.+- ..+.-.++.++|+..+
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~p--Vc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g 407 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFP--VCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG 407 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCce--eeeecccccCCcccccccccceeccccccEEEEec
Confidence 45555666666444 44444332 1111 11111110 00000011 1110 1122234445555444
Q ss_pred -CCCeEEEEECCCCcEEEEccCCCCEEEEEEec-CC-CEEEEEecCCcEEEcC
Q 002591 854 -CYQSLELWNMSENKTMTLTAHEGLIAALAVST-ET-GYVASASHDKFVKLWK 903 (903)
Q Consensus 854 -~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~sp-dg-~~LaSgs~DG~I~IWd 903 (903)
..+.+.+||..+.+++....-..+|.+++... ++ .||++- .|..++||+
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk 459 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALL-TDDRVHIYK 459 (463)
T ss_pred CCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhe-ecceEEEEe
Confidence 34699999999999986556668888887754 33 356555 466788874
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.9e-07 Score=100.97 Aligned_cols=250 Identities=14% Similarity=0.153 Sum_probs=173.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceeEEeccCCCCeEEEEECCCCCEEEEEeC-CCcEEEEeCCC
Q 002591 621 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADN 696 (903)
Q Consensus 621 ~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~IWDl~~ 696 (903)
-|.+.|+.|.... .+++.+++.||.++.|.-.. -+.+..+..|...|.+++.+-++.++.+.+. |..++++|+++
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 3777787776543 45999999999999997442 2445667789999999999999999999888 99999999987
Q ss_pred CCce-eEEeccCCCceEEEEecCCCC--eEEEEEeCCCcEEEEEcCCCeeeEE-----eecCceeEEEecCCCEEEEEEc
Q 002591 697 PGYS-LRTFMGHSASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRV-----FKGGTAQMRFQPHLGRYLAAAA 768 (903)
Q Consensus 697 ~~~~-~~~~~~h~~~V~sl~fsp~~~--~ll~sgs~Dg~I~iwDi~t~~~~~~-----~~~~~~~v~~sp~~~~ll~~s~ 768 (903)
-... ...+....+.+.++ .++... .+.++.-.+|.|.++|-....|... +..++..+.+.+.+..+++...
T Consensus 86 ~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred cchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 3221 12222223333222 222211 2334445679999999876654332 2346778889999999999999
Q ss_pred CCeEEEEECCC------CeEEEE---------ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE---
Q 002591 769 ENVVSILDAET------QACRLS---------LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE--- 829 (903)
Q Consensus 769 dg~I~i~D~~t------~~~~~~---------l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~--- 829 (903)
.|.|..|..+. .+.... +........+++|+|++..+.+-+.| .|+++++++++....+.+
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 99999998873 112111 22234567899999999999999999 999999998743222111
Q ss_pred --------------------------eecC-CCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEEEEcc
Q 002591 830 --------------------------LSCN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 873 (903)
Q Consensus 830 --------------------------~~~~-~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~~ 873 (903)
+..+ ......++|...+++|+.++--| |+|+++.+++++.+.+
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 1111 12345678999999988877654 8899999888775544
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.4e-08 Score=100.23 Aligned_cols=204 Identities=16% Similarity=0.275 Sum_probs=157.7
Q ss_pred ceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCC-CeeeE----EeecCceeEEEecCCCEEEEEEcCCeEE
Q 002591 699 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTR----VFKGGTAQMRFQPHLGRYLAAAAENVVS 773 (903)
Q Consensus 699 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t-~~~~~----~~~~~~~~v~~sp~~~~ll~~s~dg~I~ 773 (903)
..++.++||.+.|++...-|..+.++ +.+.|.++|||--+. ++.-. ....+...+.+.++...|+++-..|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~-~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVI-SVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeE-EccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 34677889999999888888767666 999999999996543 33222 2245677888999989999999999999
Q ss_pred EEECC----CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCC-C---------------------------
Q 002591 774 ILDAE----TQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS-G--------------------------- 821 (903)
Q Consensus 774 i~D~~----t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s-~--------------------------- 821 (903)
-+.+. ....++....|...|..+.|+-....+++.+.|+-..|.... +
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~ 173 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH 173 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence 88554 334555566788888888888777777777766433443211 1
Q ss_pred -----------CCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE--EEccCCCCEEEEEEecCCC
Q 002591 822 -----------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETG 888 (903)
Q Consensus 822 -----------~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~--~~~~h~~~V~sl~~spdg~ 888 (903)
.....+..+.+|...+.++.|.+....|+++..|..|.+||+-.++-+ .+.+|.+.|..+...+.-+
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~ 253 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR 253 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe
Confidence 112345567788889999999999999999999999999999766544 7889999999999988889
Q ss_pred EEEEEecCCcEEEcC
Q 002591 889 YVASASHDKFVKLWK 903 (903)
Q Consensus 889 ~LaSgs~DG~I~IWd 903 (903)
.+++++.||.|.+|+
T Consensus 254 ~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 254 QLISCGEDGGIVVWN 268 (404)
T ss_pred eeeeccCCCeEEEEe
Confidence 999999999999996
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.7e-06 Score=86.47 Aligned_cols=224 Identities=16% Similarity=0.129 Sum_probs=121.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEec---cCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEE
Q 002591 629 CHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLE---EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 703 (903)
Q Consensus 629 l~fspdg~~Latgs~Dg~V~vWd~~t~--~~~~~l~---~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~ 703 (903)
++.+.+|++||+- .|..|.|=..++. ..+.+.. ...-.=..++|+||+..||.+...|+|++||+.. ..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g--~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG--SELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc--ceeEE
Confidence 5677899888876 4666776654421 1222222 2233467899999999999999999999999974 33444
Q ss_pred eccCC-------CceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEE
Q 002591 704 FMGHS-------ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 776 (903)
Q Consensus 704 ~~~h~-------~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D 776 (903)
+.... ..|..+.|.+. +.. ......+++...+|.++-|-
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~-------------------~~s---------------~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEY-------------------KKS---------------AQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred cCcccccCCccccceeeeEeecc-------------------ccc---------------cccceeEEEEeccceeeeEE
Confidence 43211 12222222211 100 01112344444444444333
Q ss_pred CC-----CCeEEEE--ecC-CCCCeEEEEEcCCCCEEEEEeCC-e-EEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 002591 777 AE-----TQACRLS--LQG-HTKPIDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 846 (903)
Q Consensus 777 ~~-----t~~~~~~--l~~-h~~~V~sl~~spdg~~lasgs~d-~-I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g 846 (903)
+. .....+. +.. +...|.+++|+|..++|++|+.. . -..+.. ....+++-..-.+.
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a--------------~~~GLtaWRiL~~~ 191 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKA--------------SSCGLTAWRILSDS 191 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccc--------------cccCceEEEEcCCC
Confidence 21 1122222 222 46789999999988877766544 2 001100 01111111111111
Q ss_pred CEE--EEEECCC------eEEEEECCCCcEEE-EccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 847 PSL--LVIGCYQ------SLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 847 ~~l--~t~s~dg------~I~vwdl~~~~~~~-~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.+. ++...|+ +..+|.+-+.+... .....+.|..|..+|||..||+...+|.|.||+
T Consensus 192 Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 192 PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 111 1111121 22344444433332 234577899999999999999999999999995
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.7e-08 Score=99.70 Aligned_cols=234 Identities=17% Similarity=0.296 Sum_probs=145.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCce----eEEeccCC------------CceEEEEecCCC-CeEEEE
Q 002591 664 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS----LRTFMGHS------------ASVMSLDFHPNK-DDLICS 726 (903)
Q Consensus 664 h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~----~~~~~~h~------------~~V~sl~fsp~~-~~ll~s 726 (903)
..+.|++|.|...|.||++|...|.|.+|.-+....| +..|.+|. ..|..|.|..++ ..-++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 4467999999999999999999999999987653212 22344443 357778886553 334446
Q ss_pred EeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEE--------c-CCeEEEEECCCCeEEEEecCCCCCeEEEE
Q 002591 727 CDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA--------A-ENVVSILDAETQACRLSLQGHTKPIDSVC 797 (903)
Q Consensus 727 gs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s--------~-dg~I~i~D~~t~~~~~~l~~h~~~V~sl~ 797 (903)
.+.|.+|++|.+.......+.......-.-+|.++-+.+.. . |..|... .+...-..|...|.++.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-----p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-----PCRVYANAHPYHINSIS 179 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec-----cceeccccceeEeeeee
Confidence 77899999999986543222221111111122221111100 0 1111111 01111245888899999
Q ss_pred EcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCC-----CceEEEEEeCCC-CEEEEEECCCeEEEEECCCCcEE--
Q 002591 798 WDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG-----NKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM-- 869 (903)
Q Consensus 798 ~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~-----~~i~si~~sp~g-~~l~t~s~dg~I~vwdl~~~~~~-- 869 (903)
|..|...++++.+=.|.+|++.-....-.+..++.|. ..|++..|+|.. ..+...+..|.|++-|++...+.
T Consensus 180 ~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 180 FNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred ecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 9998888776644499999987653333334444443 247788899954 55667778899999999833211
Q ss_pred -------EE--------ccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 870 -------TL--------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 870 -------~~--------~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.+ ..-...|..+.|+++|+||++-+. -+|+|||
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 11 112357889999999999987653 4799997
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-07 Score=105.43 Aligned_cols=230 Identities=15% Similarity=0.180 Sum_probs=161.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCC--------------ceeEEeccCCCceEEEEecCCCCeEEEEEeC
Q 002591 664 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--------------YSLRTFMGHSASVMSLDFHPNKDDLICSCDG 729 (903)
Q Consensus 664 h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~--------------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~ 729 (903)
......|+.|+.+..+|++|+.||.++|..+.+.. ..-.++.||...|.-+.|+..... +.+.+.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-LTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-LTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc-ccccCC
Confidence 34568899999999999999999999999876421 112467799999999999987554 458888
Q ss_pred CCcEEEEEcCCCeeeEE-----eecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEE-EecCCCCCeEEEEEcCCCC
Q 002591 730 DGEIRYWSINNGSCTRV-----FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGE 803 (903)
Q Consensus 730 Dg~I~iwDi~t~~~~~~-----~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~-~l~~h~~~V~sl~~spdg~ 803 (903)
+|.|.+|-+-.+..... -+.-+.+++|..+|..+.....||.|.+=.++..+.-. .++ ......+.|++|.+
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLE 169 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHH
Confidence 99999999877753322 12346778999999999999999988776655432211 111 12344678999988
Q ss_pred EEEEEeCC-eEEEEECCCCCC----cceEE----EeecCCCceEEEEE--------eCCCCEEEEEECCCeEEEEECCCC
Q 002591 804 LLASVSED-SVRVWTVGSGSE----GECVH----ELSCNGNKFHSCVF--------HPTYPSLLVIGCYQSLELWNMSEN 866 (903)
Q Consensus 804 ~lasgs~d-~I~iwdl~s~~~----~~~i~----~~~~~~~~i~si~~--------sp~g~~l~t~s~dg~I~vwdl~~~ 866 (903)
.+..+-.. .+.+||....-. ..|.. .+......|..+.| -|+.+.|+++-.+|.+.|..-.+.
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 66655555 889998754311 11211 11222334555555 357888999999999988865554
Q ss_pred cEEEEccCCCCEEEEEEecCCCEEEEEecC
Q 002591 867 KTMTLTAHEGLIAALAVSTETGYVASASHD 896 (903)
Q Consensus 867 ~~~~~~~h~~~V~sl~~spdg~~LaSgs~D 896 (903)
..-.+....-.|....|+++|..|+.++.|
T Consensus 250 ~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 250 PEPVVVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCCeEEecccEeecceecCCCcEEEEccCc
Confidence 433344444778899999999999999865
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-06 Score=88.83 Aligned_cols=196 Identities=11% Similarity=0.062 Sum_probs=129.7
Q ss_pred CCcEEEEeCCCCCc-eeEEeccCCCceEEEEecCC----CCeEEEEEeCCCcEEEEEcCCCeeeE-EeecCceeEE----
Q 002591 686 DKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTR-VFKGGTAQMR---- 755 (903)
Q Consensus 686 Dg~I~IWDl~~~~~-~~~~~~~h~~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwDi~t~~~~~-~~~~~~~~v~---- 755 (903)
...|.+|++.+..+ .+..+.+ +.|.|. ...+|+.|+..|...+|...+..... ........+.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y~g-------~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFYTG-------MTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEeeec-------ccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 34588888876443 2333332 444442 23367788889999999998665322 2222222222
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCC
Q 002591 756 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 834 (903)
Q Consensus 756 ~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~ 834 (903)
+....-.+..++.|.++++++++-+.....+....-.+.++.+++|++++++.++. .|..|.+....+...........
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 12222456777888888888776654433332222338899999999999999888 89999997654422222333334
Q ss_pred CceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE------EEccCCCCEEEEEEecCCC
Q 002591 835 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------TLTAHEGLIAALAVSTETG 888 (903)
Q Consensus 835 ~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~------~~~~h~~~V~sl~~spdg~ 888 (903)
..-.+..|+.....++++..||++.|||++..... ....|.+.|+.+.|++-|.
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 45567789999999999999999999999875533 3446899999999998654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.9e-06 Score=97.18 Aligned_cols=253 Identities=11% Similarity=0.094 Sum_probs=151.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeccCCC----------CeE-EEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEE
Q 002591 635 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS----------LIT-DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 703 (903)
Q Consensus 635 g~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~----------~V~-~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~ 703 (903)
+..+++++.++.|.-+|.++++.+-....... .+. .+.. ++..++.++.+|.|+.+|.++ ++.+..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAED-GEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCC-CCCccc
Confidence 55777788889999999999988776643221 000 0111 345778888899999999988 555554
Q ss_pred eccCCCceEE-EEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEE----Eec--CCCEEEEEEcCCeEEEEE
Q 002591 704 FMGHSASVMS-LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR----FQP--HLGRYLAAAAENVVSILD 776 (903)
Q Consensus 704 ~~~h~~~V~s-l~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~----~sp--~~~~ll~~s~dg~I~i~D 776 (903)
..... .+.+ .... ++ .++.+..++.|..+|.++++.+..+......+. .+| .++.++++..++.+..+|
T Consensus 146 ~~~~~-~~~ssP~v~--~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 146 TKVAG-EALSRPVVS--DG-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ccCCC-ceecCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 44322 2221 1222 23 344677789999999999998877654321110 011 245678888899999999
Q ss_pred CCCCeEEEEecCCCC-------CeEEEEEcC--CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC
Q 002591 777 AETQACRLSLQGHTK-------PIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 846 (903)
Q Consensus 777 ~~t~~~~~~l~~h~~-------~V~sl~~sp--dg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g 846 (903)
..+++.+........ ....+..+| .+..++.++.+ .+..+|..+++. +..... .....+. ..+
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~---~W~~~~--~~~~~~~--~~~ 294 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI---VWKREY--GSVNDFA--VDG 294 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE---EEeecC--CCccCcE--EEC
Confidence 999987765432110 011111122 23445555555 899999988743 222111 1111122 246
Q ss_pred CEEEEEECCCeEEEEECCCCcEEEEc-cCC-CCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 847 PSLLVIGCYQSLELWNMSENKTMTLT-AHE-GLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 847 ~~l~t~s~dg~I~vwdl~~~~~~~~~-~h~-~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
..|++++.++.|..+|..+++.+... ... ....+..+ .+.+|+.++.||.|++.|
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 67888999999999999999876322 111 11222222 245677778888877653
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-05 Score=85.20 Aligned_cols=246 Identities=14% Similarity=0.122 Sum_probs=161.2
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCc-EEEEECCCCceeEEeccCCCCe--EEEEECCCCCEEEEEeC-----CCcEEEEeCC
Q 002591 625 KVICCHFSS-DGKLLATGGHDKK-AVLWHTDTLKSKTNLEEHSSLI--TDVRFSPSMPRLATSSF-----DKTVRVWDAD 695 (903)
Q Consensus 625 ~V~~l~fsp-dg~~Latgs~Dg~-V~vWd~~t~~~~~~l~~h~~~V--~~l~fspdg~~Lasgs~-----Dg~I~IWDl~ 695 (903)
....++.+| +...+|.+-.-|+ ..+||..+++....+....+.- -.-+|++||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 344677888 5567777777665 6789999998887776433322 24679999999998743 5889999999
Q ss_pred CCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEE
Q 002591 696 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 775 (903)
Q Consensus 696 ~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~ 775 (903)
.....+..|..|.-.-..|.+.|+++.|++.- |-|.-- .++++. ++=....+-.+.+.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN---GGI~Th-pd~GR~------------------kLNl~tM~psL~~l 143 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVAN---GGIETH-PDSGRA------------------KLNLDTMQPSLVYL 143 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEc---CCCccC-cccCce------------------ecChhhcCCceEEE
Confidence 65677888888887778899999997776432 323211 111111 11122334556777
Q ss_pred ECCCCeEEEEec----CCCCCeEEEEEcCCCCEEEEEeCC--------eEEEEECCCCCCcceEEE----eecCCCceEE
Q 002591 776 DAETQACRLSLQ----GHTKPIDSVCWDPSGELLASVSED--------SVRVWTVGSGSEGECVHE----LSCNGNKFHS 839 (903)
Q Consensus 776 D~~t~~~~~~l~----~h~~~V~sl~~spdg~~lasgs~d--------~I~iwdl~s~~~~~~i~~----~~~~~~~i~s 839 (903)
|.++++.+.... -|.-.|..+++..+|..++..-.. -|.+++.... ...+.. ...-.+.+-+
T Consensus 144 d~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gS 221 (305)
T PF07433_consen 144 DARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGS 221 (305)
T ss_pred ecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEE
Confidence 888888776633 377789999999998876655321 2444544321 111110 1223567899
Q ss_pred EEEeCCCCEEEEEECC-CeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecC
Q 002591 840 CVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 896 (903)
Q Consensus 840 i~~sp~g~~l~t~s~d-g~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~D 896 (903)
|+++.++..+++.+-- +.+.+||..+++.+....- ..++.++..+++ +++|.+.-
T Consensus 222 Ia~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 222 IAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred EEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCCc
Confidence 9999999988777655 6999999999998844332 235666666665 56655543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-07 Score=100.92 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=89.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEE
Q 002591 624 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 703 (903)
Q Consensus 624 ~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~ 703 (903)
..|+.+..+........++....+.+|....+. ...+-+|-..+++|+|+||+++|+++..|..|||-........-..
T Consensus 111 ~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf 189 (390)
T KOG3914|consen 111 TAISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF 189 (390)
T ss_pred ceeeeeeccceEEEEeecCCceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh
Confidence 334444443333223334444556666655533 3344589999999999999999999999999999888763333334
Q ss_pred eccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee
Q 002591 704 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 748 (903)
Q Consensus 704 ~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~ 748 (903)
..||+..|..++..++ +.|++++.|++|++||+++++++.++.
T Consensus 190 clGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 190 CLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ccccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccc
Confidence 5589999999999865 356799999999999999999887764
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-08 Score=115.34 Aligned_cols=201 Identities=15% Similarity=0.285 Sum_probs=148.7
Q ss_pred CCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCC-c
Q 002591 654 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-E 732 (903)
Q Consensus 654 t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg-~ 732 (903)
..+..++|+.|+...+|++|+-+.+.|+.|+..|.|++|++.+ +.....+.+|..+|+-+.-+.+|..+|.+++... .
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccccccccccccccCCcceeeeeccccCch
Confidence 4566778889999999999999999999999999999999998 7777888999999999999999887775555544 5
Q ss_pred EEEEEcCC-CeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec-C---CCCCeEEEEEcCCCCEEEE
Q 002591 733 IRYWSINN-GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-G---HTKPIDSVCWDPSGELLAS 807 (903)
Q Consensus 733 I~iwDi~t-~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~-~---h~~~V~sl~~spdg~~las 807 (903)
..+|++.. +...+.|. ...++.|+.....-++++......+||+.++.++.++. + ....-+++.|+|+.++|+-
T Consensus 1169 saLW~~~s~~~~~Hsf~-ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFD-EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred HHHhccccccCcccccc-ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence 77999875 33444444 34567777766566667777889999999987766532 1 2223467889998887764
Q ss_pred EeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE
Q 002591 808 VSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 869 (903)
Q Consensus 808 gs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~ 869 (903)
-+ .+||++... .++.+.... ....-.|||.|..+++-+ .|||+++.+.+
T Consensus 1248 dG----vLWDvR~~~---aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1248 DG----VLWDVRIPE---AIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred Cc----eeeeeccHH---HHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 32 689998763 333332211 112236999999888865 58999987765
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-06 Score=93.99 Aligned_cols=245 Identities=12% Similarity=0.084 Sum_probs=151.7
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCC-EEEEEeCCCcE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTV 689 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I 689 (903)
+|+....+.+|...|.+++|||..+ +|..++.+.+|+|.|+++...+..+..+ ..+++++|.-|.. +|++|...|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 5666667889999999999999877 7888999999999999999999999888 7899999988765 67777789999
Q ss_pred EEEeCCCCCceeEEecc--CCCceEEEEecC------CCCeEEEEEeCCCcEEEEEcCCC----eeeEEeec--CceeEE
Q 002591 690 RVWDADNPGYSLRTFMG--HSASVMSLDFHP------NKDDLICSCDGDGEIRYWSINNG----SCTRVFKG--GTAQMR 755 (903)
Q Consensus 690 ~IWDl~~~~~~~~~~~~--h~~~V~sl~fsp------~~~~ll~sgs~Dg~I~iwDi~t~----~~~~~~~~--~~~~v~ 755 (903)
.|||++.+...+..+.+ ...+|..|+.-+ .+. +++.... .+..|++... .++..++. ....+.
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismq 337 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQ 337 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeee
Confidence 99999976555444443 223444444322 222 4433332 3556665432 22222222 233344
Q ss_pred EecCCCEEEEEEcCC--------eEEEEECCCCeEEEEec-CC-CCC------eEEEEEcCCCCEEEEEeCC--eEEEEE
Q 002591 756 FQPHLGRYLAAAAEN--------VVSILDAETQACRLSLQ-GH-TKP------IDSVCWDPSGELLASVSED--SVRVWT 817 (903)
Q Consensus 756 ~sp~~~~ll~~s~dg--------~I~i~D~~t~~~~~~l~-~h-~~~------V~sl~~spdg~~lasgs~d--~I~iwd 817 (903)
+.+..+.+++....+ .+--.|.++|..+...+ ++ ... -..+.-.++.++|+..+++ .+.+||
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 455456666655431 11112444444333221 12 111 0112223455677766666 899999
Q ss_pred CCCCCCcceEEEeecCCCceEEEEE-eCCCCEEEEEECCCeEEEEECC
Q 002591 818 VGSGSEGECVHELSCNGNKFHSCVF-HPTYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 818 l~s~~~~~~i~~~~~~~~~i~si~~-sp~g~~l~t~s~dg~I~vwdl~ 864 (903)
..+. ..+..+.. ..+|.+++. +-++..++..-.|..++||..+
T Consensus 418 ~~s~---evvQ~l~~-~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 418 PHSF---EVVQTLAL-SEPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cchh---heeeeccc-CcceeecceeecCCcchhhheecceEEEEecC
Confidence 9887 44555444 356666664 3455556666667788888754
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-07 Score=99.62 Aligned_cols=147 Identities=14% Similarity=0.218 Sum_probs=117.9
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCC----CceeEEeccCCCceEEE
Q 002591 639 ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP----GYSLRTFMGHSASVMSL 714 (903)
Q Consensus 639 atgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~----~~~~~~~~~h~~~V~sl 714 (903)
++.+.+-.|-|-|++++..- .|. ....|.++.|.-.+.+++.|+.+|.|.++|++.. +.+...+. |...|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 44455667889998876432 232 5677999999998999999999999999999874 45555555 88999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEEcCCCee---eEEeecCceeEE-----EecCCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 002591 715 DFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKGGTAQMR-----FQPHLGRYLAAAAENVVSILDAETQACRLSL 786 (903)
Q Consensus 715 ~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~---~~~~~~~~~~v~-----~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l 786 (903)
.........|++.+.+|+|++||.+.-+| +..++++++..+ +.+..+.+++++.|-..+||.++.+..+.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 87763444566888899999999998887 888999887644 5566789999999999999999999988877
Q ss_pred cC
Q 002591 787 QG 788 (903)
Q Consensus 787 ~~ 788 (903)
..
T Consensus 385 pf 386 (425)
T KOG2695|consen 385 PF 386 (425)
T ss_pred CC
Confidence 64
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.3e-07 Score=90.93 Aligned_cols=165 Identities=13% Similarity=0.150 Sum_probs=109.2
Q ss_pred eeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCCeEEEEECCCCCEEEEEeC-----CC
Q 002591 614 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSF-----DK 687 (903)
Q Consensus 614 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----Dg 687 (903)
....++..|.++-.+-+.+-.++.++++..||.+.+++.+.. .....+..-...-.+.++...++.|.++.. -+
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 344455566666666666667788999999999999997742 122222221222223333334444444421 23
Q ss_pred cEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeee----EEeecCceeEEEecCC-CE
Q 002591 688 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT----RVFKGGTAQMRFQPHL-GR 762 (903)
Q Consensus 688 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~----~~~~~~~~~v~~sp~~-~~ 762 (903)
..++|+++-.+..+.... ....|.+++-+|.-.+++++|+.||.|-+||.+..... +..+..+..+.|+|.+ ..
T Consensus 160 ~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ceeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 466777765222222222 23449999999998899999999999999999987533 2335567788999877 67
Q ss_pred EEEEEcCCeEEEEECCC
Q 002591 763 YLAAAAENVVSILDAET 779 (903)
Q Consensus 763 ll~~s~dg~I~i~D~~t 779 (903)
|++++.||.+.-||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 89999999999999765
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-05 Score=83.84 Aligned_cols=208 Identities=14% Similarity=0.114 Sum_probs=129.8
Q ss_pred CCcEEEEeCCCCCceeEEeccC--CCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec--CceeEEEecCCC
Q 002591 686 DKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLG 761 (903)
Q Consensus 686 Dg~I~IWDl~~~~~~~~~~~~h--~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~--~~~~v~~sp~~~ 761 (903)
+|+|..||..+ ++.+....-- .....+..+ ++++.++ +++.++.|+.||+.+++.+..+.. ..... ....++
T Consensus 2 ~g~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~~-~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRT-GKELWSYDLGPGIGGPVATAV-PDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGG 77 (238)
T ss_dssp TSEEEEEETTT-TEEEEEEECSSSCSSEEETEE-EETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETT
T ss_pred CCEEEEEECCC-CCEEEEEECCCCCCCccceEE-EeCCEEE-EEcCCCEEEEEECCCCCEEEEeeccccccce-eeeccc
Confidence 68899999987 5555555421 122221122 2345454 667899999999999998877653 21122 245567
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEe-cCCC---CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc
Q 002591 762 RYLAAAAENVVSILDAETQACRLSL-QGHT---KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 836 (903)
Q Consensus 762 ~ll~~s~dg~I~i~D~~t~~~~~~l-~~h~---~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~ 836 (903)
.+++++.++.|+.+|.++++.+..+ .... ..........++..++++..+ .|..+|++++ +.+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~ 154 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPR 154 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCC
Confidence 8888888899999999999999884 3221 112222233337777777755 9999999988 444444332211
Q ss_pred ----------eEEEEEeCCCCEEEEEECCCeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 837 ----------FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 837 ----------i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+..-....++ .++++..++.+..+|+.+++.+. ......+..+ ...++..|+.++.++.|.+||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1122222244 78888888854444999999763 2223333332 346777888888999999886
|
... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=95.12 Aligned_cols=207 Identities=16% Similarity=0.138 Sum_probs=149.2
Q ss_pred eeeeeEeecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEecc--CCCCeEEEEECCCC-C-EEEEE-eCC
Q 002591 613 FKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSM-P-RLATS-SFD 686 (903)
Q Consensus 613 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~-Dg~V~vWd~~t~~~~~~l~~--h~~~V~~l~fspdg-~-~Lasg-s~D 686 (903)
.+.+..++.|...|.+++.+-+|.+++|.+. |..++++|+++...+.-++. -.+.+.++ .++.. . .|+++ -.+
T Consensus 43 vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~s 121 (558)
T KOG0882|consen 43 VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKS 121 (558)
T ss_pred eeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccC
Confidence 4556778899999999999999999999777 99999999987655533332 22222222 22221 1 33333 348
Q ss_pred CcEEEEeCCCCCcee-EEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCC------CeeeEEe------------
Q 002591 687 KTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN------GSCTRVF------------ 747 (903)
Q Consensus 687 g~I~IWDl~~~~~~~-~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t------~~~~~~~------------ 747 (903)
+.|.|+|-....... ..-.-|..+|.++.+.+.++..+ +....|.|..|..+. .+....+
T Consensus 122 g~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v-SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~ 200 (558)
T KOG0882|consen 122 GKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV-SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKA 200 (558)
T ss_pred CCcEEECCcCCcCccceecccccCceEEEEeecccccee-eccccceeEeecCCCcccCccccccccccccchhhccccc
Confidence 999999987644333 34445999999999999987554 888889999999873 1111111
Q ss_pred ecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC--------------------------------CC-CCeE
Q 002591 748 KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--------------------------------HT-KPID 794 (903)
Q Consensus 748 ~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~--------------------------------h~-~~V~ 794 (903)
+....+++|+|++..+...+.|..|++++.++++.+..+.. |. ..-+
T Consensus 201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~ 280 (558)
T KOG0882|consen 201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGT 280 (558)
T ss_pred ccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccc
Confidence 23456799999999999999999999999999876654321 11 1235
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEECCCC
Q 002591 795 SVCWDPSGELLASVSEDSVRVWTVGSG 821 (903)
Q Consensus 795 sl~~spdg~~lasgs~d~I~iwdl~s~ 821 (903)
.++|+..|++|+.++.=.|+|.++.++
T Consensus 281 ~~~fdes~~flly~t~~gikvin~~tn 307 (558)
T KOG0882|consen 281 NAVFDESGNFLLYGTILGIKVINLDTN 307 (558)
T ss_pred eeEEcCCCCEEEeecceeEEEEEeecC
Confidence 678999999999888778999998876
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-05 Score=90.15 Aligned_cols=222 Identities=13% Similarity=0.135 Sum_probs=124.5
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe
Q 002591 663 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 742 (903)
Q Consensus 663 ~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~ 742 (903)
...-....+.++|+|++++++ .||...||.... .. -.. .+....++|...+. +|+-...+.|.|+.--..+
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~-~r-~k~----~G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALA-WR-NKA----FGSGLSFVWSSRNR--YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTT-TE-EEE----EEE-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccC-Cc-ccc----cCceeEEEEecCcc--EEEEECCCeEEEEEcCccc
Confidence 344557899999999999884 478888887432 11 111 23345588888443 4466668889997433333
Q ss_pred eeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC-
Q 002591 743 CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG- 821 (903)
Q Consensus 743 ~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~- 821 (903)
..+.+..+...-.+.. +.++....++.|.+||+.+++.+..+... +|..|.|++++.+++..+.+.+.|++....
T Consensus 101 ~~k~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~ 176 (443)
T PF04053_consen 101 VVKSIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEA 176 (443)
T ss_dssp TT-----SS-EEEEE---SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHH
T ss_pred cceEEcCCcccceEEc--CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchh
Confidence 3334444432222222 44555556669999999999999998743 489999999999999999998888776432
Q ss_pred -----CC--cceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEe
Q 002591 822 -----SE--GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 894 (903)
Q Consensus 822 -----~~--~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs 894 (903)
++ ...+..+..-...|.+.+|..+ .|+-.+.. +|+. +-.|+...+..-+.++.=+.+.+....|+...
T Consensus 177 ~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~D 251 (443)
T PF04053_consen 177 VAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLID 251 (443)
T ss_dssp HHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-
T ss_pred cccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEE
Confidence 00 0122333222567888899877 44444444 7776 55666666666677888888888778888888
Q ss_pred cCCcEEEc
Q 002591 895 HDKFVKLW 902 (903)
Q Consensus 895 ~DG~I~IW 902 (903)
.|+.|..+
T Consensus 252 r~~~v~~~ 259 (443)
T PF04053_consen 252 RDGNVISY 259 (443)
T ss_dssp TT--EEEE
T ss_pred CCCCEEEE
Confidence 88887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.7e-06 Score=98.12 Aligned_cols=175 Identities=15% Similarity=0.175 Sum_probs=129.6
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeEEeecCceeEE-EecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCC
Q 002591 723 LICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 801 (903)
Q Consensus 723 ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~-~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spd 801 (903)
.++-|+--..+..+|+++.+..+...-....+. ...++..+++|...|+|.+-|.++.+.++++..|.+.|..+...
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~-- 226 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ-- 226 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--
Confidence 344677777888999999988777654442333 33445677888889999999999999999999999999866554
Q ss_pred CCEEEEEeC---------C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEECCCeEEEEE---CCCCc
Q 002591 802 GELLASVSE---------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWN---MSENK 867 (903)
Q Consensus 802 g~~lasgs~---------d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g-~~l~t~s~dg~I~vwd---l~~~~ 867 (903)
|++|++|+. | .|+|||+++......+... .. ..-+.|+|.. ..+++++..|...+.| +.+..
T Consensus 227 GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 227 GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---YG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred CCeEEEeecccccccccccchhhhhhhhhhhccCCcccc---cC-chhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 898988874 3 5899999886443333221 11 1345678864 4588888999999998 44332
Q ss_pred EE--EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 868 TM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 868 ~~--~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.- .+......+.++++++++..++.|..+|.|.+|.
T Consensus 303 ~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 303 AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 22 3334455699999999999999999999999994
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.6e-06 Score=88.02 Aligned_cols=160 Identities=16% Similarity=0.157 Sum_probs=96.5
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEe-----CCCcEE
Q 002591 660 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-----GDGEIR 734 (903)
Q Consensus 660 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs-----~Dg~I~ 734 (903)
.+..|.++-.+-+.+--+..++++..||.+.+++.+......+.+..-...-.+.++...++ ++.++. .-+..+
T Consensus 84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFY 162 (319)
T ss_pred eeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeeccc-EEecCCcceEeecccee
Confidence 33344444334444445678999999999999998752221122211111112233333333 332221 123455
Q ss_pred EEEcCCCeeeEEe---ecCceeEEEecCCCEEEE-EEcCCeEEEEECCCCe-EEEEecCCCCCeEEEEEcCC-CCEEEEE
Q 002591 735 YWSINNGSCTRVF---KGGTAQMRFQPHLGRYLA-AAAENVVSILDAETQA-CRLSLQGHTKPIDSVCWDPS-GELLASV 808 (903)
Q Consensus 735 iwDi~t~~~~~~~---~~~~~~v~~sp~~~~ll~-~s~dg~I~i~D~~t~~-~~~~l~~h~~~V~sl~~spd-g~~lasg 808 (903)
+|+++-.+....- ...+..++.+|.-..+++ |+.||.+.+||.+... ++..+..|+.+|..+-|+|. +..|+++
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEe
Confidence 6665543322111 123667778887765554 5568999999999874 34456789999999999994 5588899
Q ss_pred eCC-eEEEEECCC
Q 002591 809 SED-SVRVWTVGS 820 (903)
Q Consensus 809 s~d-~I~iwdl~s 820 (903)
++| .+..||..+
T Consensus 243 sedGslw~wdas~ 255 (319)
T KOG4714|consen 243 SEDGSLWHWDAST 255 (319)
T ss_pred cCCCcEEEEcCCC
Confidence 988 999999764
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-06 Score=91.49 Aligned_cols=158 Identities=13% Similarity=0.122 Sum_probs=106.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----eeEEeccCCCCeEEEEECCCCCEEEEEeC---CCcEEEEeCCCC
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----SKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNP 697 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~----~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~IWDl~~~ 697 (903)
.+..+.+++++++||++..++...++++.... ..... .-...-+++.|..+...+..+.. ...+.+|....
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~- 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS- 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence 45556678888999998888887777765322 22222 22233345555555555544444 44455555543
Q ss_pred CceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----CceeEEEecCCCEEEEEEcCCeEE
Q 002591 698 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAAENVVS 773 (903)
Q Consensus 698 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~----~~~~v~~sp~~~~ll~~s~dg~I~ 773 (903)
.+.+.+.||-..++.++|+||+. +|++++.|..||+-....--.+..|-- -+..++..++ ..|++++.|++|+
T Consensus 142 -~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 142 -GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLR 218 (390)
T ss_pred -cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEE
Confidence 45667778999999999999976 555999999999987766555544432 2444555444 4488999999999
Q ss_pred EEECCCCeEEEEec
Q 002591 774 ILDAETQACRLSLQ 787 (903)
Q Consensus 774 i~D~~t~~~~~~l~ 787 (903)
+||+++++++.++.
T Consensus 219 ~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 219 LWDITSGKLLDTCD 232 (390)
T ss_pred EEecccCCcccccc
Confidence 99999999886654
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.3e-05 Score=83.82 Aligned_cols=258 Identities=15% Similarity=0.156 Sum_probs=151.0
Q ss_pred cCCCCEEEEEe---------CCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeE
Q 002591 632 SSDGKLLATGG---------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 702 (903)
Q Consensus 632 spdg~~Latgs---------~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~ 702 (903)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.|+... ++.|.++++.+......
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57888777642 346789999998655444433 67899999999999999887 67899999876322112
Q ss_pred Eecc-------C---------CCceEEEEecCCCCeEEEEEeCCCcEEEEE-----------------------------
Q 002591 703 TFMG-------H---------SASVMSLDFHPNKDDLICSCDGDGEIRYWS----------------------------- 737 (903)
Q Consensus 703 ~~~~-------h---------~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwD----------------------------- 737 (903)
+..+ - -+.-..+.|+|++.++++.--++..|+.+.
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2222 0 112345889999998876655555444433
Q ss_pred ------cCCCeeeEEe-e-------cCceeEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEecC-CCCCe---E
Q 002591 738 ------INNGSCTRVF-K-------GGTAQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQG-HTKPI---D 794 (903)
Q Consensus 738 ------i~t~~~~~~~-~-------~~~~~v~~sp~~~~ll~~s~d-----g~I~i~D~~t~~~~~~l~~-h~~~V---~ 794 (903)
+.+++....- . .-+..+.|.+++..+++.-.+ -.+.++|..++.+...+.. ....| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 3333221100 0 012346788887745554432 2677778887754433322 23333 3
Q ss_pred EEEEc-CCCC-EEEEEeCC---eEEEEECCCCCCcceEEEeecCCCceEE-EEEeCCCCEEEEEECC-----CeEEEEEC
Q 002591 795 SVCWD-PSGE-LLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGCY-----QSLELWNM 863 (903)
Q Consensus 795 sl~~s-pdg~-~lasgs~d---~I~iwdl~s~~~~~~i~~~~~~~~~i~s-i~~sp~g~~l~t~s~d-----g~I~vwdl 863 (903)
.+.|. +++. +|.....+ .|.+++...+. ...+......|.. +.++++++.|+..+.. ..|+..++
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~----~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK----PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE----EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccc----eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 55655 6666 44444444 68888876642 3345444556644 6688888777655543 36777788
Q ss_pred C-CCcEEEEccCCCCEEEEEEecCCCEEEEEec
Q 002591 864 S-ENKTMTLTAHEGLIAALAVSTETGYVASASH 895 (903)
Q Consensus 864 ~-~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~ 895 (903)
. .+....+.........+.|+|++++++-.+.
T Consensus 315 ~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 315 DSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred CCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 8 6666666554444479999999998776543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.5e-05 Score=94.25 Aligned_cols=241 Identities=12% Similarity=0.161 Sum_probs=151.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCcee
Q 002591 622 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 701 (903)
Q Consensus 622 H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~ 701 (903)
..+.|.++.|.-+..-|+.+..+|.|.+-|.++.. ......-...|.+++|+||...++..+.+++|.+-+-. -.++
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~--f~~i 143 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE-LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD--FEPI 143 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc-eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc--ccch
Confidence 34689999999999999999999999999877643 23333456779999999999999999888877665432 1111
Q ss_pred EE--e---ccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeee-E--EeecCceeEEEecCCCEEEEEEc----C
Q 002591 702 RT--F---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-R--VFKGGTAQMRFQPHLGRYLAAAA----E 769 (903)
Q Consensus 702 ~~--~---~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~-~--~~~~~~~~v~~sp~~~~ll~~s~----d 769 (903)
.. + ....+....+-|-..... | -|+ .|.....+....... . ....+...++|--+|.++++... +
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTq-f-rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQ-F-RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred hccccccccccccccceeccccccee-e-ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 11 1 011122233444332211 1 222 222222221111110 0 12345667899999888887432 3
Q ss_pred -CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeC
Q 002591 770 -NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 844 (903)
Q Consensus 770 -g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp 844 (903)
..|++||.+ +..-..-......-.+++|-|.|.++++.-.+ .|.+|.-+..........+......+..++|+.
T Consensus 221 ~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 221 TRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred ceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC
Confidence 789999987 44333323334455789999999998876432 688888654444444444444455589999999
Q ss_pred CCCEEEEE---ECCCeEEEEECCCCcEE
Q 002591 845 TYPSLLVI---GCYQSLELWNMSENKTM 869 (903)
Q Consensus 845 ~g~~l~t~---s~dg~I~vwdl~~~~~~ 869 (903)
++..|++. .....|++|-+.+....
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred CCCceeeeecccccceEEEEEecCeEEE
Confidence 99998883 44446999998876543
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.9e-05 Score=75.65 Aligned_cols=256 Identities=14% Similarity=0.114 Sum_probs=134.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEE
Q 002591 634 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 713 (903)
Q Consensus 634 dg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~s 713 (903)
-|++++.|++.|.+++.++++|.....+.....--......+++..|.+|+.|++.+..|.++ ..++...+.......+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEecccCCceecc
Confidence 466899999999999999999987777654433223344567889999999999999999998 5566665544333334
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----ecCc--eeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEec
Q 002591 714 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGT--AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 787 (903)
Q Consensus 714 l~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~----~~~~--~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~ 787 (903)
-+..+....++ .+...|.|.--..+........ .+++ ..++. +..+..+.-||.+.-+| ..|+.+..+.
T Consensus 141 P~i~~g~~sly-~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 141 PVIAPGDGSLY-AAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceecCCCceEE-EEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 44555333344 4444566655555544211111 1111 11111 23344555566666666 4555555333
Q ss_pred CCCCCeEE-EEEc-CCCCEEEEEeCC---------eEEEEECCCCCCcceEEEeecCCCceEEEEEeC----CCCEEEEE
Q 002591 788 GHTKPIDS-VCWD-PSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP----TYPSLLVI 852 (903)
Q Consensus 788 ~h~~~V~s-l~~s-pdg~~lasgs~d---------~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp----~g~~l~t~ 852 (903)
..++|.. -+-+ |....|+.+.++ .-.+|...++. ..+.... +-..+.++. ..+++..+
T Consensus 216 -t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~---t~~vy~~---p~l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 216 -TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGT---TLHVYLS---PKLRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred -CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCc---EEEEEeC---cccceeccCCCCcchhhhhhh
Confidence 2222221 1111 222333333333 34556655541 1111110 001122221 13456778
Q ss_pred ECCCeEEEEECCCCcEEEEccCCCCEEEE---E-----E-ec--CCCEEEEEecCCcEEEcC
Q 002591 853 GCYQSLELWNMSENKTMTLTAHEGLIAAL---A-----V-ST--ETGYVASASHDKFVKLWK 903 (903)
Q Consensus 853 s~dg~I~vwdl~~~~~~~~~~h~~~V~sl---~-----~-sp--dg~~LaSgs~DG~I~IWd 903 (903)
+.||++.|.-.+.. +.....|.+.+-.+ . | +| -+.+|+.|+.|..|+-||
T Consensus 289 s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cld 349 (354)
T KOG4649|consen 289 SGDGKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLD 349 (354)
T ss_pred cCCCcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEe
Confidence 88998888744322 12223333322222 1 1 22 124577888999999986
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.9e-05 Score=88.17 Aligned_cols=256 Identities=13% Similarity=0.111 Sum_probs=149.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeccCCC------CeE--EEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEecc
Q 002591 635 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS------LIT--DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 706 (903)
Q Consensus 635 g~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~------~V~--~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~ 706 (903)
+..+++++.++.|+-+|..+++.+-.+..... .+. .+... ++..++.++.++.|+.+|.++ ++.+..+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T-G~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET-GKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC-CCEeeeecC
Confidence 34677777889999999999988877654332 010 11111 226788888999999999998 555555443
Q ss_pred CCCc-----eE-EEEecCCCCeEEEEEe---------CCCcEEEEEcCCCeeeEEeecCc--------------------
Q 002591 707 HSAS-----VM-SLDFHPNKDDLICSCD---------GDGEIRYWSINNGSCTRVFKGGT-------------------- 751 (903)
Q Consensus 707 h~~~-----V~-sl~fsp~~~~ll~sgs---------~Dg~I~iwDi~t~~~~~~~~~~~-------------------- 751 (903)
.... |. +..+. +. +++.++ .+|.|..+|..+++.+..++...
T Consensus 139 ~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 2210 11 12222 13 333443 46889999999999877664321
Q ss_pred ----eeEEEecCCCEEEEEEcCC------------------eEEEEECCCCeEEEEecCCCCCeE------EEEEc----
Q 002591 752 ----AQMRFQPHLGRYLAAAAEN------------------VVSILDAETQACRLSLQGHTKPID------SVCWD---- 799 (903)
Q Consensus 752 ----~~v~~sp~~~~ll~~s~dg------------------~I~i~D~~t~~~~~~l~~h~~~V~------sl~~s---- 799 (903)
....+.+.++.+++++.++ .|.-+|.++++.+..+..-...+. ...+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 0233445567888887665 799999999999988653111110 01111
Q ss_pred CCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE------------------ECCCe
Q 002591 800 PSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI------------------GCYQS 857 (903)
Q Consensus 800 pdg~---~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~------------------s~dg~ 857 (903)
-++. +++.++.+ .+..+|.++++..-..... ...++..| ..++++ ..++.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 1333 56667666 8999999998543222211 01122333 223332 23578
Q ss_pred EEEEECCCCcEEEEccCC---------CCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 858 LELWNMSENKTMTLTAHE---------GLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 858 I~vwdl~~~~~~~~~~h~---------~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
|.-+|+.+++.+...... .+...-.....+.+|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 999999999987322211 1111111112456788888899888764
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.9e-05 Score=79.08 Aligned_cols=188 Identities=15% Similarity=0.122 Sum_probs=110.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc-------CCCCeEEEEECCCC------CEEEEEeCCCcEEE
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSM------PRLATSSFDKTVRV 691 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~-------h~~~V~~l~fspdg------~~Lasgs~Dg~I~I 691 (903)
.=+-++||||+.+||.+...|+|+|||+.. ..+..+.. -...|..+.|.+.. ..|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 346789999999999999999999999864 33444432 24567778785532 25677778888887
Q ss_pred EeCCC----CCceeEEec---cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEE-
Q 002591 692 WDADN----PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRY- 763 (903)
Q Consensus 692 WDl~~----~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~l- 763 (903)
|-+.. +.....+|. .+...|.++.|+|..+-+++.|.....-..+.. ...+..+-++..+..++
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a--------~~~GLtaWRiL~~~Pyyk 195 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKA--------SSCGLTAWRILSDSPYYK 195 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccc--------cccCceEEEEcCCCCcEE
Confidence 77532 122223322 346789999999987766655544332111100 01111111111111111
Q ss_pred -EEEEcCC------eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002591 764 -LAAAAEN------VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 821 (903)
Q Consensus 764 -l~~s~dg------~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~ 821 (903)
+....|+ +..+|.+-+.+...........|..+..+|||.+||+...+ .|.+|++-+.
T Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 196 QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 1111111 11233333222222223356789999999999999999888 9999999764
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.5e-06 Score=96.75 Aligned_cols=183 Identities=13% Similarity=0.131 Sum_probs=135.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeE-
Q 002591 676 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM- 754 (903)
Q Consensus 676 dg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v- 754 (903)
++..++.|+.-..+..+|+++ .+..+...-....|+-++.. ++++++|...|+|.+-|.++.+.++++..+...+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~-~~e~r~~~v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNT-EKETRTTNVSASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeeccc-ceeeeeeeccCCceEEEEec---CcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 455788888888899999987 45555554444457767664 3467799999999999999999999999887665
Q ss_pred EEecCCCEEEEEEc---------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC--EEEEEeCCeEEEEECCCCCC
Q 002591 755 RFQPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE--LLASVSEDSVRVWTVGSGSE 823 (903)
Q Consensus 755 ~~sp~~~~ll~~s~---------dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~--~lasgs~d~I~iwdl~s~~~ 823 (903)
.|+-.|+.+++++. |.-|+|||++..+.+..+.-+.++ .-+.|+|.-. ++++.+.+...+.|..+...
T Consensus 222 DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 222 DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 48888999999876 557899999998877666655554 4567888543 44444455778888433322
Q ss_pred -cceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEEC
Q 002591 824 -GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 863 (903)
Q Consensus 824 -~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl 863 (903)
...+.-+......+..+.+++++..++.+..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2344444555667999999999999999999999999973
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0002 Score=78.97 Aligned_cols=268 Identities=14% Similarity=0.106 Sum_probs=135.8
Q ss_pred EEEcCCCCEEEEEe-CCC--cEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEec
Q 002591 629 CHFSSDGKLLATGG-HDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 705 (903)
Q Consensus 629 l~fspdg~~Latgs-~Dg--~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~ 705 (903)
=+|..||+.|+.++ .|| .+.+.|+++++...-..+.........++++.+.|+.......|+-.|+++ .+....+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T-~e~~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT-LEERVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc-CcEEEEEE
Confidence 46778997665554 455 466678888765554443323333566778888887766667899999998 44445555
Q ss_pred cCCCceEEEEecCC-CCeEEEEEe----------------------CCCcEEEEEcCCCeeeEEeecC--ceeEEEecCC
Q 002591 706 GHSASVMSLDFHPN-KDDLICSCD----------------------GDGEIRYWSINNGSCTRVFKGG--TAQMRFQPHL 760 (903)
Q Consensus 706 ~h~~~V~sl~fsp~-~~~ll~sgs----------------------~Dg~I~iwDi~t~~~~~~~~~~--~~~v~~sp~~ 760 (903)
.....+-...|..+ +...++.+- -...|...|+.+++....+... ...+.++|..
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 55555555666422 222332211 1234667788888877776654 4778999999
Q ss_pred CEEEEEEcCC-----eEEEEECCC-CeEEEEecCCCC--CeEEEEEcCCCCEEEEEe-----CC-eEEEEECCCCCCcce
Q 002591 761 GRYLAAAAEN-----VVSILDAET-QACRLSLQGHTK--PIDSVCWDPSGELLASVS-----ED-SVRVWTVGSGSEGEC 826 (903)
Q Consensus 761 ~~ll~~s~dg-----~I~i~D~~t-~~~~~~l~~h~~--~V~sl~~spdg~~lasgs-----~d-~I~iwdl~s~~~~~~ 826 (903)
..+++-|.+| .-+||-+++ +.....+..+.. .+..=-|.+||..|.--+ .+ .|.-+|+.+++.. .
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~-~ 278 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR-R 278 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE-E
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce-E
Confidence 8888877654 225554332 233333333322 233446899998554422 23 5777888776432 2
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEECCC----------------eEEEEECCCCcEEEEccCCC-----------CEE
Q 002591 827 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----------------SLELWNMSENKTMTLTAHEG-----------LIA 879 (903)
Q Consensus 827 i~~~~~~~~~i~si~~sp~g~~l~t~s~dg----------------~I~vwdl~~~~~~~~~~h~~-----------~V~ 879 (903)
+... .....+-.+++++.++-=+.|. -|+++++..++...+..|.. .=.
T Consensus 279 ~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hP 354 (386)
T PF14583_consen 279 LMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHP 354 (386)
T ss_dssp EEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT--
T ss_pred EEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCC
Confidence 2221 1344555677887655444431 57788998877664444432 124
Q ss_pred EEEEecCCCEEEEEe-cCCcEEEc
Q 002591 880 ALAVSTETGYVASAS-HDKFVKLW 902 (903)
Q Consensus 880 sl~~spdg~~LaSgs-~DG~I~IW 902 (903)
...|+||+++|+..| ..|...||
T Consensus 355 hp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp --EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCccCCCCCEEEEECCCCCCccEE
Confidence 579999999866544 57776665
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.7e-05 Score=87.75 Aligned_cols=255 Identities=14% Similarity=0.092 Sum_probs=147.6
Q ss_pred CCCCEEEEEeC-CCcEEEEECCCCceeEEecc-CCCCeEEEEEC--CCCCEEEEEe------------------CCCcEE
Q 002591 633 SDGKLLATGGH-DKKAVLWHTDTLKSKTNLEE-HSSLITDVRFS--PSMPRLATSS------------------FDKTVR 690 (903)
Q Consensus 633 pdg~~Latgs~-Dg~V~vWd~~t~~~~~~l~~-h~~~V~~l~fs--pdg~~Lasgs------------------~Dg~I~ 690 (903)
.||++|+.-.. +..|...+++..++.+.++. ....+..++|- |+..|+++++ ..+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 47888888664 55677777776655544432 22233333332 3333333332 244556
Q ss_pred EEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEe---CCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEE
Q 002591 691 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 767 (903)
Q Consensus 691 IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs---~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s 767 (903)
+.|.++ .+....+.- ......+.+++++.++++++. ...++...+......+..|.-.. ...+.+++++..+
T Consensus 219 vID~et-meV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-iea~vkdGK~~~V-- 293 (635)
T PRK02888 219 AVDAET-MEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-IEEAVKAGKFKTI-- 293 (635)
T ss_pred EEECcc-ceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-HHHhhhCCCEEEE--
Confidence 666665 233333321 223455788888887776652 22344444444333333332111 1134456665554
Q ss_pred cCCeEEEEECCC-----CeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCC---------cceEEEee
Q 002591 768 AENVVSILDAET-----QACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE---------GECVHELS 831 (903)
Q Consensus 768 ~dg~I~i~D~~t-----~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d--~I~iwdl~s~~~---------~~~i~~~~ 831 (903)
.++.|.++|.++ .+.+..+. -....+.|.++|||+++++++.- +|.|+|+.+... ...+.+..
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 467899999998 34555444 44567889999999988877764 999999987532 11223333
Q ss_pred cCCCceEEEEEeCCCCEEEEEECCCeEEEEECCC----------CcEE-EEccCCCCE-----EEEEEecCCCEEEEEe
Q 002591 832 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE----------NKTM-TLTAHEGLI-----AALAVSTETGYVASAS 894 (903)
Q Consensus 832 ~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~----------~~~~-~~~~h~~~V-----~sl~~spdg~~LaSgs 894 (903)
. +......+|.++|..+.+..-|..|..||+.. ..++ .+.-|-.+. .+=.-.+||+||++..
T Consensus 373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred c-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 3 33445668999998888888899999999876 2233 233332221 1122357888888764
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=64.58 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=36.9
Q ss_pred eeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 002591 613 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 651 (903)
Q Consensus 613 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd 651 (903)
++++.++++|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.9e-05 Score=87.62 Aligned_cols=203 Identities=14% Similarity=0.249 Sum_probs=138.9
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCC-----cEEEEEcCCC-----
Q 002591 672 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNG----- 741 (903)
Q Consensus 672 ~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg-----~I~iwDi~t~----- 741 (903)
+|++.+..+|.|+.+|.|.+++-. -..++.|..+...|...-|.-++..+|++.+.|+ .|+|||++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 356788899999999988887643 3445777777777444555666656776766664 4899998643
Q ss_pred -eee---EEee-------cCceeEEEecCCCEEEEEEcCCeEEEEECC--C--CeEEEEecCCCCCeEEEEEcCCCCE-E
Q 002591 742 -SCT---RVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAE--T--QACRLSLQGHTKPIDSVCWDPSGEL-L 805 (903)
Q Consensus 742 -~~~---~~~~-------~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~--t--~~~~~~l~~h~~~V~sl~~spdg~~-l 805 (903)
.|+ +.+. .+...++++.+-..+++|-.+|.|..+.-+ . +...........+|+.+++..++.. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 344 2222 135668888888999999999999998432 1 2222222235678999999999985 5
Q ss_pred EEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEc-cCCCCEE
Q 002591 806 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-AHEGLIA 879 (903)
Q Consensus 806 asgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~-~h~~~V~ 879 (903)
++++...|.+|.+... . .....+..++..+.|..+++....|++++ +..|++||....... .+. +|.....
T Consensus 188 Fv~Tt~~V~~y~l~gr-~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGR-T-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred EEEecceeEEEEecCC-C-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEE
Confidence 6666668999999833 2 34555777888888888887666455544 457999998765543 555 5554443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.5e-05 Score=92.47 Aligned_cols=180 Identities=18% Similarity=0.238 Sum_probs=127.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeE
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 702 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~ 702 (903)
.+.|+|++++ +++|+.|+.+|.|++++... .. .+...|+.. ..+|.++++|+.||+|.|..+.++. ...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~-~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDD-EIT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCc-cce
Confidence 5678888887 55999999999999999763 33 444445443 5679999999999999999998743 333
Q ss_pred EeccCCCceEEEEecCC----CCeEEEEEeCCCcEEEEEcCCC---e--eeEEeecCceeEEEecCCCEEEEEEcCCeEE
Q 002591 703 TFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNG---S--CTRVFKGGTAQMRFQPHLGRYLAAAAENVVS 773 (903)
Q Consensus 703 ~~~~h~~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwDi~t~---~--~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~ 773 (903)
.+. ...++.+|+++|+ ....+++|+..| +.++.-+-. . ....-++.+.+++|. +.+++-..|-.|+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDDGVK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCCCcE
Confidence 333 4567999999998 222455888888 777654311 1 123334566667665 5577888888899
Q ss_pred EEECCCCeEEEEecCCCCCe------EEEEEcCCCCEEEEEeCCeEEEEECC
Q 002591 774 ILDAETQACRLSLQGHTKPI------DSVCWDPSGELLASVSEDSVRVWTVG 819 (903)
Q Consensus 774 i~D~~t~~~~~~l~~h~~~V------~sl~~spdg~~lasgs~d~I~iwdl~ 819 (903)
+||+.+...+..+......+ ..+.|.+ ...|+.|-.|+|+|..++
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~-~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD-EDRLVIGWGDSVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecC-CCeEEEecCCeEEEEEEe
Confidence 99999988877665433332 3467776 455667777789998887
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00022 Score=83.53 Aligned_cols=192 Identities=12% Similarity=0.158 Sum_probs=130.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCC-CEEEEEeCCCc-----EEEEeCCCC-
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKT-----VRVWDADNP- 697 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~-----I~IWDl~~~- 697 (903)
.|.| |++.+..+|.|+.+|.|.+++ ...+.++.+..+...|...-|.-++ .+|++.+.|+. |+|||++.-
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4554 567788999999999998887 3445567788877773333344444 67888777654 899999742
Q ss_pred ----Ccee---EEec----cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcC--CCe-----eeEEeecCceeEEEecC
Q 002591 698 ----GYSL---RTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN--NGS-----CTRVFKGGTAQMRFQPH 759 (903)
Q Consensus 698 ----~~~~---~~~~----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~--t~~-----~~~~~~~~~~~v~~sp~ 759 (903)
..++ +.+. ....++.+++.+.+ -..+|+|-.+|.|.++.-. ..+ ....-+.+++.+.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 1233 2222 13567888888887 4466788889999988422 111 11122457888889888
Q ss_pred CCEEEEEEcCCeEEEEECCCCeE-EEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCC
Q 002591 760 LGRYLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 820 (903)
Q Consensus 760 ~~~ll~~s~dg~I~i~D~~t~~~-~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s 820 (903)
+..++.+.....|.+|.+....+ ...+..|...+.|..|++...-|++++...|.+||...
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~ 244 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG 244 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCC
Confidence 87756666667788888874442 44467788899999999865557777777899999863
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0011 Score=76.45 Aligned_cols=239 Identities=15% Similarity=0.130 Sum_probs=135.7
Q ss_pred eEEEEEcCCCCEEEEE-eCCC----cEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCC-----------cE
Q 002591 626 VICCHFSSDGKLLATG-GHDK----KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-----------TV 689 (903)
Q Consensus 626 V~~l~fspdg~~Latg-s~Dg----~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-----------~I 689 (903)
+..++++|||++||.+ +..| .|+|+|+++++.+...-... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999988865 3333 59999999997765432211 122399999998877665433 37
Q ss_pred EEEeCCCCCce-eEEeccCCCc--eEEEEecCCCCeEEEEEeCC---CcEEEEEcCCC-----eeeEEeec--CceeEEE
Q 002591 690 RVWDADNPGYS-LRTFMGHSAS--VMSLDFHPNKDDLICSCDGD---GEIRYWSINNG-----SCTRVFKG--GTAQMRF 756 (903)
Q Consensus 690 ~IWDl~~~~~~-~~~~~~h~~~--V~sl~fsp~~~~ll~sgs~D---g~I~iwDi~t~-----~~~~~~~~--~~~~v~~ 756 (903)
++|.+.+.... ...+...... ...+..++++.++++..... ..|++.|+..+ ........ ......-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888774333 3344433322 56788999999887766544 35888888875 23333322 2222222
Q ss_pred ecCCCEEEEEEc----CCeEEEEECCCCe---EEEEecCCCCC--eEEEEEcCCCC-EEEEEeCC---eEEEEECCCCCC
Q 002591 757 QPHLGRYLAAAA----ENVVSILDAETQA---CRLSLQGHTKP--IDSVCWDPSGE-LLASVSED---SVRVWTVGSGSE 823 (903)
Q Consensus 757 sp~~~~ll~~s~----dg~I~i~D~~t~~---~~~~l~~h~~~--V~sl~~spdg~-~lasgs~d---~I~iwdl~s~~~ 823 (903)
.. ++.++..+. .+.|...++.... ....+..+... +..+.. .+. +++....+ .|++|++..+
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~-- 359 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDG-- 359 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-T--
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCC--
Confidence 22 554444433 3578888888765 23344555553 444444 344 44444444 7999999822
Q ss_pred cceEEEeec-CCCceEEEEEeCCCCEEEEEECC----CeEEEEECCCCcEEEE
Q 002591 824 GECVHELSC-NGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKTMTL 871 (903)
Q Consensus 824 ~~~i~~~~~-~~~~i~si~~sp~g~~l~t~s~d----g~I~vwdl~~~~~~~~ 871 (903)
.....+.. ..+.|..+...++.+.+...-.. .+|+.||+.+++...+
T Consensus 360 -~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 360 -KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp -EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred -cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 22222222 23345555555666554443322 4899999999887643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00013 Score=83.80 Aligned_cols=118 Identities=16% Similarity=0.144 Sum_probs=88.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-eccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCce
Q 002591 622 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 700 (903)
Q Consensus 622 H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~ 700 (903)
|...|.--+++..+++|+.|+.-|.|++|+-..+..... ..+....+..+..+++..++|.|+..|.|.|+-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 444566666777888999999999999999665543332 3335555667777888888999999999999988763221
Q ss_pred e----EE-eccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCC
Q 002591 701 L----RT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 740 (903)
Q Consensus 701 ~----~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t 740 (903)
. .. -..|...|++++|++++..++ +|+..|.|.+-.+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEech
Confidence 1 11 123788999999999988765 999999999988876
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00025 Score=75.97 Aligned_cols=192 Identities=14% Similarity=0.164 Sum_probs=136.5
Q ss_pred CceEEEEecCCCCeEEEEEeCCCc-EEEEEcCCCeeeEEeecCc-----eeEEEecCCCEEEEEEc-----CCeEEEEEC
Q 002591 709 ASVMSLDFHPNKDDLICSCDGDGE-IRYWSINNGSCTRVFKGGT-----AQMRFQPHLGRYLAAAA-----ENVVSILDA 777 (903)
Q Consensus 709 ~~V~sl~fsp~~~~ll~sgs~Dg~-I~iwDi~t~~~~~~~~~~~-----~~v~~sp~~~~ll~~s~-----dg~I~i~D~ 777 (903)
.....++.+|.....++.+-.-|+ ..+||..+++....+.... ..-+|++++.+|++.-. .|.|-|||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 345568889977778878877665 6789999999887665432 24679999999998755 479999999
Q ss_pred C-CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------------------eEEEEECCCCCCcceEEE--e--ecC
Q 002591 778 E-TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-------------------SVRVWTVGSGSEGECVHE--L--SCN 833 (903)
Q Consensus 778 ~-t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-------------------~I~iwdl~s~~~~~~i~~--~--~~~ 833 (903)
. +.+.+.++..|.-.-..+.+.|||+.|+++..+ ++.+.|..++ ..+.. + ..|
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---ALLEQVELPPDLH 161 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---ceeeeeecCcccc
Confidence 9 668888898887777889999999877766422 3555556655 33333 3 336
Q ss_pred CCceEEEEEeCCCCEEEEEECCC-------eEEEEECCCCc-EEE-----EccCCCCEEEEEEecCCCEEEEEe-cCCcE
Q 002591 834 GNKFHSCVFHPTYPSLLVIGCYQ-------SLELWNMSENK-TMT-----LTAHEGLIAALAVSTETGYVASAS-HDKFV 899 (903)
Q Consensus 834 ~~~i~si~~sp~g~~l~t~s~dg-------~I~vwdl~~~~-~~~-----~~~h~~~V~sl~~spdg~~LaSgs-~DG~I 899 (903)
...|..+++.++|..++..-..+ -|.+++....- .+. ...-.+.|-+|+++.++.+|++.| .-+++
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 67899999999998766665544 34555544321 111 123457899999999998775554 57788
Q ss_pred EEcC
Q 002591 900 KLWK 903 (903)
Q Consensus 900 ~IWd 903 (903)
.+||
T Consensus 242 ~~~d 245 (305)
T PF07433_consen 242 AVWD 245 (305)
T ss_pred EEEE
Confidence 8985
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.9e-07 Score=100.12 Aligned_cols=198 Identities=15% Similarity=0.204 Sum_probs=132.9
Q ss_pred CCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCC--ceeEEeccCCCCeEEEEECCC-CCEEEEEe----CCCcEEEE
Q 002591 622 STSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSPS-MPRLATSS----FDKTVRVW 692 (903)
Q Consensus 622 H~~~V~~l~fspdg--~~Latgs~Dg~V~vWd~~t~--~~~~~l~~h~~~V~~l~fspd-g~~Lasgs----~Dg~I~IW 692 (903)
....+.|+++..+. ..+++|..+|.|.+-.+... .......+|...+++++|++- ...||+|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 45568888876644 47889999999999887632 224556678899999999885 44566662 36679999
Q ss_pred eCCCCC-ce--eEEec-cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCC-eeeEEeec-CceeEEEecCCCEEEEE
Q 002591 693 DADNPG-YS--LRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKG-GTAQMRFQPHLGRYLAA 766 (903)
Q Consensus 693 Dl~~~~-~~--~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~-~~~~~~~~-~~~~v~~sp~~~~ll~~ 766 (903)
|+.+.- .+ ...|. +......++||..+. .++.+|.....|.++|++.. .....+.. -+..+.+.|.....++.
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec
Confidence 998631 11 11122 234456689998664 46668888889999999833 22222222 34557788876667777
Q ss_pred EcCCeEEEEE-CCCCeE-EEEecCC----CCCeEEEEEcCCCC-EEEEEeCC--eEEEEECCC
Q 002591 767 AAENVVSILD-AETQAC-RLSLQGH----TKPIDSVCWDPSGE-LLASVSED--SVRVWTVGS 820 (903)
Q Consensus 767 s~dg~I~i~D-~~t~~~-~~~l~~h----~~~V~sl~~spdg~-~lasgs~d--~I~iwdl~s 820 (903)
..|+.|.+|| .++-+. +..+... ...+..++|+|... ++++...| +|++||+..
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 7799999999 333322 2222211 22489999999766 77777777 899999864
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-06 Score=58.14 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcC
Q 002591 10 KMLDVYIHDYLVKRDLKASAQAFQAEG 36 (903)
Q Consensus 10 ~~l~~yiydyl~~~~~~~~a~a~~~e~ 36 (903)
+.||.+|||||+++|+.++|++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999885
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0014 Score=74.65 Aligned_cols=90 Identities=11% Similarity=0.082 Sum_probs=70.9
Q ss_pred eEEEEECCCCCCcceEEEe-ecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEE
Q 002591 812 SVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYV 890 (903)
Q Consensus 812 ~I~iwdl~s~~~~~~i~~~-~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~L 890 (903)
..++|++...+ ..++... ......+.+++++|+...++.|+.||+|.+||...+.... ....-.++.++|+|+|.+|
T Consensus 237 d~ciYE~~r~k-lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 237 DSCIYECSRNK-LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEEeecCc-eeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEE
Confidence 35677776443 2333222 2346789999999999999999999999999998775443 3455678999999999999
Q ss_pred EEEecCCcEEEcC
Q 002591 891 ASASHDKFVKLWK 903 (903)
Q Consensus 891 aSgs~DG~I~IWd 903 (903)
++|+.-|.|.+||
T Consensus 315 ~V~s~qGelQ~FD 327 (545)
T PF11768_consen 315 VVGSEQGELQCFD 327 (545)
T ss_pred EEEcCCceEEEEE
Confidence 9999999999997
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.9e-06 Score=62.34 Aligned_cols=39 Identities=41% Similarity=0.557 Sum_probs=36.9
Q ss_pred CceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 002591 655 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 693 (903)
Q Consensus 655 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 693 (903)
++++.++.+|...|++|+|+|++.+|++++.|+.|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.6e-06 Score=88.64 Aligned_cols=159 Identities=12% Similarity=0.139 Sum_probs=118.8
Q ss_pred EEEeCCCcEEEEEcCCCeeeE-EeecCceeEEEecCCCEEEEEEcCCeEEEEECCCC-----eEEEEecCCCCCeEEEEE
Q 002591 725 CSCDGDGEIRYWSINNGSCTR-VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-----ACRLSLQGHTKPIDSVCW 798 (903)
Q Consensus 725 ~sgs~Dg~I~iwDi~t~~~~~-~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~-----~~~~~l~~h~~~V~sl~~ 798 (903)
++.+.+-.|-+-|++++.--. .-+..+....|.-.++.++.|+..|.|..+|++.. .+...+. |.+.|+++..
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhh
Confidence 456667889999999875322 13456667778888899999999999999999975 3444444 8999999887
Q ss_pred cC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEE--EEEeCCCCEEEEEECCCeEEEEECCCCcEEEEcc-
Q 002591 799 DP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS--CVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA- 873 (903)
Q Consensus 799 sp-dg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~s--i~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~~- 873 (903)
-. ++.+|++.+.+ +|++||++.-+..+.+....+|-+.-.- +..++....|++++.|...+||.++.+.++....
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 76 67777777777 9999999987555558888887655433 3456677889999999999999999999883322
Q ss_pred ----CCCCEEEEEEe
Q 002591 874 ----HEGLIAALAVS 884 (903)
Q Consensus 874 ----h~~~V~sl~~s 884 (903)
.+..+.+++|.
T Consensus 387 ~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 387 PYSASEVDIPSVAFD 401 (425)
T ss_pred CCccccccccceehh
Confidence 33355566664
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.3e-05 Score=86.46 Aligned_cols=183 Identities=16% Similarity=0.222 Sum_probs=125.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeee
Q 002591 665 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 744 (903)
Q Consensus 665 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~ 744 (903)
.+.++|++++ ++.|+.|..+|.|++++... .. ++...|... ..+|. ++++|+.||+|.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~--~~-~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG--NP-KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC--cc-ccccccccc------ccCCc-eEEEecCCCcEEEeeccCCccc
Confidence 3456677765 56899999999999999874 33 444445544 33444 6679999999999988877644
Q ss_pred --EEeecCceeEEEecC-----CCEEEEEEcCCeEEEEECCCC--eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEE
Q 002591 745 --RVFKGGTAQMRFQPH-----LGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV 815 (903)
Q Consensus 745 --~~~~~~~~~v~~sp~-----~~~ll~~s~dg~I~i~D~~t~--~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~i 815 (903)
..|+.....++++|+ .+.+++|+.-| +.++.-+-. +.-..+....++|.+|+|. |++||-+++..|+|
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~v 183 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKV 183 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEE
Confidence 466778999999998 36788888888 777654322 1112345567899999998 89999999889999
Q ss_pred EECCCCCCcceEEEeec---CCCceEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002591 816 WTVGSGSEGECVHELSC---NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 816 wdl~s~~~~~~i~~~~~---~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~ 864 (903)
||+.+......+..-.. .+.....+.|.++.+ |+. |...+|+|..++
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVI-GWGDSVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEE-ecCCeEEEEEEe
Confidence 99987633222211110 112234556766543 444 555578888777
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0021 Score=73.10 Aligned_cols=252 Identities=15% Similarity=0.132 Sum_probs=166.3
Q ss_pred EEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeC-CCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEE
Q 002591 647 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 725 (903)
Q Consensus 647 V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 725 (903)
+.+++..+......+..+. ....+.+.+++..++.... ...+.+.+... .............-..+++++.+..+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ceeeeeccCCCccccceeeCCCCCeEEE
Confidence 6666655555544444333 5667788888865544432 22444444441 2111111111133456888888888887
Q ss_pred EEeCCCcEEEEEcCCCeeeEEeec--CceeEEEecCCCEEEEEEc---CCeEEEEECCCCeEEEEecCCCCCeEEEEEcC
Q 002591 726 SCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDP 800 (903)
Q Consensus 726 sgs~Dg~I~iwDi~t~~~~~~~~~--~~~~v~~sp~~~~ll~~s~---dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp 800 (903)
+...++.|.+.|..+.++...... ....+.++++++.++++.. ++.+.++|..+.+.+.+...-..+ ..++++|
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 888789999999888877766543 4567899999988888776 689999999999888886554445 8899999
Q ss_pred CCCEEEEEeC-C-eEEEEECCCCCCcc-eEEEeecCCCceEEEEEeCCCCEEEEEECC---CeEEEEECCCCcEEEEc-c
Q 002591 801 SGELLASVSE-D-SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLT-A 873 (903)
Q Consensus 801 dg~~lasgs~-d-~I~iwdl~s~~~~~-~i~~~~~~~~~i~si~~sp~g~~l~t~s~d---g~I~vwdl~~~~~~~~~-~ 873 (903)
+|..++.... + .|.++|........ .......-......+.+.+++.++++.... +.+.+.|..++...... .
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 9996666663 3 89999976542211 000011223445677899999987776655 49999999998887442 1
Q ss_pred CCC-CEEEEEEecCCCEEEEEecC-CcEEE
Q 002591 874 HEG-LIAALAVSTETGYVASASHD-KFVKL 901 (903)
Q Consensus 874 h~~-~V~sl~~spdg~~LaSgs~D-G~I~I 901 (903)
-.. ....+.++|+|+++.+.... +.|.+
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 112 56778889999988777433 44443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00023 Score=81.46 Aligned_cols=191 Identities=13% Similarity=0.233 Sum_probs=124.7
Q ss_pred CceeEEeccCCCceEEEEecCCCCeEEEEEeCC---CcEEEEEcCCCeeeE--EeecCceeEEEecCCCEEEEEEc-CC-
Q 002591 698 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGSCTR--VFKGGTAQMRFQPHLGRYLAAAA-EN- 770 (903)
Q Consensus 698 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D---g~I~iwDi~t~~~~~--~~~~~~~~v~~sp~~~~ll~~s~-dg- 770 (903)
+.....+..-...+..-+|+|++..+.+..-.. ..++++|+++++... .+.+......|+|++.+++.+.. |+
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence 444555555666777889999988766553333 359999999887544 45567777899999988877765 44
Q ss_pred -eEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 002591 771 -VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 845 (903)
Q Consensus 771 -~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~ 845 (903)
.|+++|+....... +....+.-+.-.|+|||++|+..++. .|.++++..... ..+......-..-.|+|+
T Consensus 262 ~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~Spd 336 (425)
T COG0823 262 PDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPD 336 (425)
T ss_pred ccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCC
Confidence 67788988877443 44333444467899999987776654 577777765432 222222222336689999
Q ss_pred CCEEEEEECC-C--eEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEE
Q 002591 846 YPSLLVIGCY-Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASA 893 (903)
Q Consensus 846 g~~l~t~s~d-g--~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSg 893 (903)
|++|+..+.. | .|.++|+.++..+....+......-+|.++++.|+..
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEe
Confidence 9999988854 3 4778888776644333444444444555666554443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0025 Score=69.26 Aligned_cols=255 Identities=11% Similarity=0.115 Sum_probs=153.4
Q ss_pred CcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEe----------CCCcEEEEeCCCCCceeEEeccC---C---
Q 002591 645 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDADNPGYSLRTFMGH---S--- 708 (903)
Q Consensus 645 g~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~I~IWDl~~~~~~~~~~~~h---~--- 708 (903)
+.|+|+|.++++.+-.+..-- .-.+..+|+++.+++++ ..-.|.+||..+ -.....+.-. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-L~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-LSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-TEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCc-CcccceEecCCcchhee
Confidence 479999999998887776432 33466799999888753 234589999987 3333322211 1
Q ss_pred -CceEEEEecCCCCeEEEE-EeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEE
Q 002591 709 -ASVMSLDFHPNKDDLICS-CDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLS 785 (903)
Q Consensus 709 -~~V~sl~fsp~~~~ll~s-gs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~-t~~~~~~ 785 (903)
.....+.++.+++++++. .+---.|.|.|+..++.+..+..+-....+-.....|.+.|.||.+..+.+. .|+...+
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 112235677777765532 2334568889999999888887665554443334678899999999888887 4444322
Q ss_pred ----ecCCCCCe-EEEEEcCCCC-EEEEEeCCeEEEEECCCCCCcceEEEeecC----------CCceEEEEEeCCCCEE
Q 002591 786 ----LQGHTKPI-DSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCN----------GNKFHSCVFHPTYPSL 849 (903)
Q Consensus 786 ----l~~h~~~V-~sl~~spdg~-~lasgs~d~I~iwdl~s~~~~~~i~~~~~~----------~~~i~si~~sp~g~~l 849 (903)
|.....++ ..-++...+. +++..-.+.|+-.|+.... ......+..- .+...-+++++....|
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 11222222 2334444444 4444434477777776542 2222222110 1123346788766666
Q ss_pred EEEECCC----------eEEEEECCCCcEEEEccCCCCEEEEEEecCCC-EEEEEe-cCCcEEEcC
Q 002591 850 LVIGCYQ----------SLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 903 (903)
Q Consensus 850 ~t~s~dg----------~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~-~LaSgs-~DG~I~IWd 903 (903)
++.-..+ .|.+||+.+++.+....-+..+.+|.++.+.+ +|++.+ .++.|.|||
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 6643221 68889999999985554455688999998776 665544 578999986
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.9e-05 Score=88.73 Aligned_cols=109 Identities=16% Similarity=0.230 Sum_probs=84.6
Q ss_pred EEEEEcCCCCEEEEEe----CCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeE
Q 002591 627 ICCHFSSDGKLLATGG----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 702 (903)
Q Consensus 627 ~~l~fspdg~~Latgs----~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~ 702 (903)
+-+.|+|...++|+++ ..|.|.||- ++|++-+.... .-.+++++|+|..-.|+.|=.-|.+.+|...+ .+...
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCC-ceeee
Confidence 3457899989998886 357898884 56665443321 12356799999988889998899999999886 44455
Q ss_pred EeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcC
Q 002591 703 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 739 (903)
Q Consensus 703 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~ 739 (903)
....|..+|..+.|+++|..++ ++..-|.|.+|...
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~-t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLM-TLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEE-EcCCCceeEEEEee
Confidence 5567999999999999988655 99999999999876
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00084 Score=78.29 Aligned_cols=182 Identities=8% Similarity=-0.043 Sum_probs=113.4
Q ss_pred ecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceeEEEecCCCEEEEEEcC----CeEEEEECCCCeEEEEecCC
Q 002591 716 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE----NVVSILDAETQACRLSLQGH 789 (903)
Q Consensus 716 fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~--~~~~~v~~sp~~~~ll~~s~d----g~I~i~D~~t~~~~~~l~~h 789 (903)
+.+++..+..+.-..+.+.++|.++.+....+. +....+.++++++++++++.+ .++...+..+...+..+.-.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 344554444344445677777888776655543 334557889999998888632 34555544433322222211
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCC--CcceEEEeecCCCceEEEEEeCCCCEEEEEEC-CCeEEEEECCCC
Q 002591 790 TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS--EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSEN 866 (903)
Q Consensus 790 ~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~--~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~-dg~I~vwdl~~~ 866 (903)
.+ -.+.++|++... ..+.|.++|.++.. ....+..+. -......+.++|||+++++++. +.+|.|+|+.+.
T Consensus 280 --~i--ea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 280 --RI--EEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred --HH--HHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence 01 134457886665 33489999998710 113333333 3667888999999999888776 679999999886
Q ss_pred cE------------EEEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 867 KT------------MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 867 ~~------------~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+. +.-..-.-.....+|+.+|..+.|---|..|..||
T Consensus 354 k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 354 DDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred hhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 53 21111233345678889988888888899999996
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0014 Score=77.06 Aligned_cols=242 Identities=14% Similarity=0.152 Sum_probs=136.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCC-----eE-EEEECCCCCEEEEEe---------CCCcEEEEeCCCCCce
Q 002591 636 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-----IT-DVRFSPSMPRLATSS---------FDKTVRVWDADNPGYS 700 (903)
Q Consensus 636 ~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~-----V~-~l~fspdg~~Lasgs---------~Dg~I~IWDl~~~~~~ 700 (903)
..++.++.++.|+.+|.++++.+-.+...... |. ...+. +..++.++ .++.|..+|..+ ++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~T-G~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVET-GKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCC-Cce
Confidence 57788888999999999999998887644321 11 11121 23455553 367889999988 555
Q ss_pred eEEeccCCC--------------------ceE-EEEecCCCCeEEEEEeCCC------------------cEEEEEcCCC
Q 002591 701 LRTFMGHSA--------------------SVM-SLDFHPNKDDLICSCDGDG------------------EIRYWSINNG 741 (903)
Q Consensus 701 ~~~~~~h~~--------------------~V~-sl~fsp~~~~ll~sgs~Dg------------------~I~iwDi~t~ 741 (903)
+..+..... .|+ ...+.+.++ +++.++.++ .|.-+|++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 444432111 011 123333344 344565454 7999999999
Q ss_pred eeeEEeecCce---------eEEEe----cCCC---EEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEE
Q 002591 742 SCTRVFKGGTA---------QMRFQ----PHLG---RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL 805 (903)
Q Consensus 742 ~~~~~~~~~~~---------~v~~s----p~~~---~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~l 805 (903)
+.+..+..... ...+. -++. .+++++.+|.+..+|.++++.+...... ...++.+| +.++
T Consensus 267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vy 342 (488)
T cd00216 267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVY 342 (488)
T ss_pred CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEE
Confidence 98877653211 01111 1222 4677778999999999999988875421 11223333 2222
Q ss_pred EEE-----------------eCC-eEEEEECCCCCCcceEEEeecCC--------CceEEEEEeCCCCEEEEEECCCeEE
Q 002591 806 ASV-----------------SED-SVRVWTVGSGSEGECVHELSCNG--------NKFHSCVFHPTYPSLLVIGCYQSLE 859 (903)
Q Consensus 806 asg-----------------s~d-~I~iwdl~s~~~~~~i~~~~~~~--------~~i~si~~sp~g~~l~t~s~dg~I~ 859 (903)
+.. ..+ .|.-+|+.+++. +-...... .........-.+..|++++.||.|+
T Consensus 343 v~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~---~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ 419 (488)
T cd00216 343 LGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV---VWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFR 419 (488)
T ss_pred EccccccccCcccccCCCCCCCceEEEEEeCCCCcE---eeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEE
Confidence 211 112 677777777642 22221110 1111111122556789999999999
Q ss_pred EEECCCCcEEEEccCCCCEEE--EEEecCCC
Q 002591 860 LWNMSENKTMTLTAHEGLIAA--LAVSTETG 888 (903)
Q Consensus 860 vwdl~~~~~~~~~~h~~~V~s--l~~spdg~ 888 (903)
.+|..+|+.+........+.+ +.+..+++
T Consensus 420 ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~ 450 (488)
T cd00216 420 AFDATTGKELWKFRTPSGIQATPMTYEVNGK 450 (488)
T ss_pred EEECCCCceeeEEECCCCceEcCEEEEeCCE
Confidence 999999998833333333332 23344554
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00044 Score=83.97 Aligned_cols=227 Identities=13% Similarity=0.188 Sum_probs=133.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002591 664 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 743 (903)
Q Consensus 664 h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~ 743 (903)
..+.|.++.|.-+..-|+.+..+|.|.+-|..+. .+.....-...|.+++|+||.. +++..+.+++|.+-+ .+...
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT-~~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEE-LLALITGRQTLLFMT-KDFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEe-ccccc
Confidence 3468999999999999999999999999988763 2333334567899999999977 444555566665533 22221
Q ss_pred eEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCC----------eEEEEecCCCCCeEEEEEcCCCCEEEEE-----
Q 002591 744 TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ----------ACRLSLQGHTKPIDSVCWDPSGELLASV----- 808 (903)
Q Consensus 744 ~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~----------~~~~~l~~h~~~V~sl~~spdg~~lasg----- 808 (903)
+....... .-.+ .+.++.++....=.-|....+ +.......-.+.=++|+|--||.++|+.
T Consensus 143 i~E~~L~~---d~~~-~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 143 IAEKPLDA---DDER-KSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE 218 (1265)
T ss_pred hhcccccc---cccc-ccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence 11110000 0000 012222222221111111111 1000000011223468999999999883
Q ss_pred eC-CeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEC---CCeEEEEECCCCcEE----EEccCCCCEEE
Q 002591 809 SE-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMSENKTM----TLTAHEGLIAA 880 (903)
Q Consensus 809 s~-d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~---dg~I~vwdl~~~~~~----~~~~h~~~V~s 880 (903)
.. ..|+|||-. + ..-..-....+.-.+++|-|.|..+++... |+.|.+|.-+.-+.- .+......|..
T Consensus 219 ~~~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred CCceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence 33 279999976 2 111111122444567899999998888754 457999987654432 23344455999
Q ss_pred EEEecCCCEEEE---EecCCcEEEc
Q 002591 881 LAVSTETGYVAS---ASHDKFVKLW 902 (903)
Q Consensus 881 l~~spdg~~LaS---gs~DG~I~IW 902 (903)
++|+.++..|++ ......|++|
T Consensus 295 L~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 295 LAWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred eeecCCCCceeeeecccccceEEEE
Confidence 999999999887 4444458888
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.007 Score=65.87 Aligned_cols=236 Identities=14% Similarity=0.173 Sum_probs=142.7
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEECCCCceeEEeccCCC-------CeEEEEECCCCCEEEEEeC--CCc
Q 002591 628 CCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFSPSMPRLATSSF--DKT 688 (903)
Q Consensus 628 ~l~fspdg~~Latgs----------~Dg~V~vWd~~t~~~~~~l~~h~~-------~V~~l~fspdg~~Lasgs~--Dg~ 688 (903)
.+..+||++.+++++ ....|.+||..+......+.-... ....+.++.|++++++... --.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 366789999888754 344699999999888776543222 2334678888888877644 456
Q ss_pred EEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcC-CCeeeEEe----ecCc----eeEEEecC
Q 002591 689 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVF----KGGT----AQMRFQPH 759 (903)
Q Consensus 689 I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~-t~~~~~~~----~~~~----~~v~~sp~ 759 (903)
|.|-|+.. ++.+..+.- .+++. + .|.++.-|.+-+.||.+....+. .|+..... .... ..-.+...
T Consensus 120 VtVVDl~~-~kvv~ei~~-PGC~~-i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 120 VTVVDLAA-KKVVGEIDT-PGCWL-I--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEETTT-TEEEEEEEG-TSEEE-E--EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred EEEEECCC-CceeeeecC-CCEEE-E--EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 88899987 555555542 22222 2 23332234466679999998887 45543222 1111 12334556
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEE--EecCC----------CCCeEEEEEcCCCCEEEEEe--------CC---eEEEE
Q 002591 760 LGRYLAAAAENVVSILDAETQACRL--SLQGH----------TKPIDSVCWDPSGELLASVS--------ED---SVRVW 816 (903)
Q Consensus 760 ~~~ll~~s~dg~I~i~D~~t~~~~~--~l~~h----------~~~V~sl~~spdg~~lasgs--------~d---~I~iw 816 (903)
++.++..+.+|.|+-.|+....... .+..- .+...-+++++....|++.- .+ .|.+|
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 6788888999999999887664322 22111 12233477877555444321 11 48888
Q ss_pred ECCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEE-CCCeEEEEECCCCcEEEEc
Q 002591 817 TVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMTLT 872 (903)
Q Consensus 817 dl~s~~~~~~i~~~~~~~~~i~si~~sp~g~-~l~t~s-~dg~I~vwdl~~~~~~~~~ 872 (903)
|+.++ +.+..+.. +..+.++..+.+.+ .|++.+ .++.|.+||..+++.+...
T Consensus 275 D~~t~---krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 275 DLKTH---KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp ETTTT---EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred ECCCC---eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 88877 55555543 34577888888765 565554 4689999999999988433
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0014 Score=75.29 Aligned_cols=221 Identities=11% Similarity=0.116 Sum_probs=117.5
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEE-eCCCCCc
Q 002591 621 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW-DADNPGY 699 (903)
Q Consensus 621 ~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW-Dl~~~~~ 699 (903)
...-....+.++|+|++++++ .||...||.....+.... +.-...+|...+ .+|+-....+|.|+ ++++ .
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~--~ 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN--E 100 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE---
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcc--c
Confidence 344558899999999999985 588888888544444332 234568898854 56666668889996 4432 2
Q ss_pred eeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC-ceeEEEecCCCEEEEEEcCCeEEEEECC
Q 002591 700 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAAENVVSILDAE 778 (903)
Q Consensus 700 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~-~~~v~~sp~~~~ll~~s~dg~I~i~D~~ 778 (903)
....+.. ...+..|-. |. +|+..+ ++.|.+||+.+++.++.+... +..+.|++++..++..+.+ .++|++.+
T Consensus 101 ~~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 101 VVKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp TT------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred cceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 2222221 123444433 44 454444 458999999999999999876 5899999998887777654 56665543
Q ss_pred CC-----------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 002591 779 TQ-----------ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 847 (903)
Q Consensus 779 t~-----------~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~ 847 (903)
.. .....+..-...|.+.+|..+ .|+-.+...|+. +..+. ...+.. -+.++.-+.+.+..+
T Consensus 174 ~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkY--l~~Ge-~~~i~~---ld~~~yllgy~~~~~ 245 (443)
T PF04053_consen 174 LEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKY--LVNGE-TGIIAH---LDKPLYLLGYLPKEN 245 (443)
T ss_dssp HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEE--EETTE-EEEEEE----SS--EEEEEETTTT
T ss_pred chhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEE--EEcCC-cceEEE---cCCceEEEEEEccCC
Confidence 32 022222222478899999966 444444446666 33331 122222 245666677777777
Q ss_pred EEEEEECCCeEEEEECCC
Q 002591 848 SLLVIGCYQSLELWNMSE 865 (903)
Q Consensus 848 ~l~t~s~dg~I~vwdl~~ 865 (903)
.++....++.|..+.+..
T Consensus 246 ~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 246 RLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEEE-TT--EEEEE--H
T ss_pred EEEEEECCCCEEEEEECH
Confidence 788888887777776643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0018 Score=73.78 Aligned_cols=219 Identities=15% Similarity=0.097 Sum_probs=150.2
Q ss_pred CCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeC---CCcEEEEeCCCCCc
Q 002591 624 SKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGY 699 (903)
Q Consensus 624 ~~V~~l~fspdg~~L-atgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~IWDl~~~~~ 699 (903)
..-.+++++++++.+ ++...++.|.+.|..+.+....+..-. .-..++|+++++.++.+.. +++|.+.|..+ .+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-Ce
Confidence 344578888888844 444456899999988776666654333 6778999999988777765 68888888887 44
Q ss_pred eeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeE-E----e--ecCceeEEEecCCCEEEEEEcC---
Q 002591 700 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-V----F--KGGTAQMRFQPHLGRYLAAAAE--- 769 (903)
Q Consensus 700 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~-~----~--~~~~~~v~~sp~~~~ll~~s~d--- 769 (903)
.+.+......+ ..+++.|++..++++-..++.|.+.|.......+ . . ......+.+.+++.++.+....
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 44444433334 7899999999888777789999999988776663 1 1 1234568899999977776654
Q ss_pred CeEEEEECCCCeEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCC
Q 002591 770 NVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 845 (903)
Q Consensus 770 g~I~i~D~~t~~~~~~l~~h~~-~V~sl~~spdg~~lasgs~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~ 845 (903)
+.+.+.|..++........-.. ....+.++|+|.++.+.... .+.+.|..+......+.........+..+++.+.
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 5999999999877765222222 45678999999977776443 8899998776333333332222333555555544
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0049 Score=63.31 Aligned_cols=141 Identities=13% Similarity=0.073 Sum_probs=91.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEE-
Q 002591 635 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS- 713 (903)
Q Consensus 635 g~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~s- 713 (903)
.++++.|+..+.+.--|..+|+.+.+-.- ...|.+-+.- -|++++.|+..|.+++.+.++ +..+..+.... .|.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~-~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVILE-TVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecc-hhheeeeeehh-hhccc
Confidence 34777888888888888888877655321 1222222222 467899999999999999998 43344333221 2221
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc---eeEEEecCCCEEEEEEcCCeEEEEECCCC
Q 002591 714 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQ 780 (903)
Q Consensus 714 l~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~---~~v~~sp~~~~ll~~s~dg~I~i~D~~t~ 780 (903)
....+++. +++.++.|++.+..|.++..|+...+.+- ..-++.+-.+.++++...|.|.-...++.
T Consensus 99 a~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 99 AQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred eEEcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 22334444 77899999999999999999988766432 22345665566777777666655554443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00067 Score=77.66 Aligned_cols=201 Identities=17% Similarity=0.220 Sum_probs=127.5
Q ss_pred EEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeC---C-CcEEEEeCCCCCc-eeEEeccCCCceEEEEecCCCC
Q 002591 647 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---D-KTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPNKD 721 (903)
Q Consensus 647 V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---D-g~I~IWDl~~~~~-~~~~~~~h~~~V~sl~fsp~~~ 721 (903)
+.+-|.+ +.....+......+..-+|++++..++..+. . ..|.++|++++.. .+..+.++.. ...|+|+|.
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~ 250 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGS 250 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCC
Confidence 3344433 5556666666677888899999987655532 2 3589999987432 2333444443 488999999
Q ss_pred eEEEEEeCCCcE--EEEEcCCCeeeEEe--ecCceeEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEecCCCCCeE
Q 002591 722 DLICSCDGDGEI--RYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPID 794 (903)
Q Consensus 722 ~ll~sgs~Dg~I--~iwDi~t~~~~~~~--~~~~~~v~~sp~~~~ll~~s~d-g--~I~i~D~~t~~~~~~l~~h~~~V~ 794 (903)
.++++...||.. +++|+..+...+.. .+....-.|+|+|..++.++.. | .|.++|.+......... ....-.
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~~~~~ 329 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SGGGNS 329 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cCCCCc
Confidence 999888888864 55577666543311 2233456799999998888764 3 67778888775533322 222222
Q ss_pred EEEEcCCCCEEEEEeC--C--eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCC
Q 002591 795 SVCWDPSGELLASVSE--D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 856 (903)
Q Consensus 795 sl~~spdg~~lasgs~--d--~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg 856 (903)
.-.|+|||++|+..+. + .|.+.|+.++.. +..+. .......-.|.++++.++..+..+
T Consensus 330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 330 NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK---IRILT-STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CccCCCCCCEEEEEeccCCceeeEEeccCCCCc---EEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence 7789999998887773 2 477888776643 22211 122333446778888777665543
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0036 Score=66.21 Aligned_cols=198 Identities=14% Similarity=0.185 Sum_probs=115.8
Q ss_pred eeEeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccC-CCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 002591 616 ANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWD 693 (903)
Q Consensus 616 ~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~V~vWd~~t~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 693 (903)
...+.+-...|..|+|+|+.+ ++|+....+.|..++. +++.++++.-. .+..-.|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 345666666799999999755 6666777788888886 47888877643 35688999988887777666689999999
Q ss_pred CCCCCce-----eEEec-----cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCC---CeeeEE-----------eec
Q 002591 694 ADNPGYS-----LRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRV-----------FKG 749 (903)
Q Consensus 694 l~~~~~~-----~~~~~-----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t---~~~~~~-----------~~~ 749 (903)
+...... +..+. .+...+-.|+|.+.++.++++. +..-..||.+.. ...+.. +..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceec
Confidence 8542211 11121 2445689999999988888554 455566666653 211111 112
Q ss_pred CceeEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCC---------CCeEEEEEcCCCCEEEEEeCCeEEEE
Q 002591 750 GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSEDSVRVW 816 (903)
Q Consensus 750 ~~~~v~~sp~~~~ll~~s~-dg~I~i~D~~t~~~~~~l~~h~---------~~V~sl~~spdg~~lasgs~d~I~iw 816 (903)
....+.++|..+.+++-+. ...|.++| .+|+.+..+.-.. ..-..|+|+++|++.++.-.+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 4567889999887777665 56788888 6676655443222 24678999999987766654455444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0018 Score=68.42 Aligned_cols=197 Identities=16% Similarity=0.230 Sum_probs=110.9
Q ss_pred EeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----cCceeEEEecCCCEEEEEEcCCeEEEEECC
Q 002591 703 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAE 778 (903)
Q Consensus 703 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~----~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~ 778 (903)
.+.+-...+..|+|.|+.+.++|+....+.|..++.. ++.++.+. +....+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4555666799999999999999999999999999974 77777664 345678887665444444448899998873
Q ss_pred CC------eEEEEec-----CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC--CCCcceEEE------eecCCCceE
Q 002591 779 TQ------ACRLSLQ-----GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS--GSEGECVHE------LSCNGNKFH 838 (903)
Q Consensus 779 t~------~~~~~l~-----~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s--~~~~~~i~~------~~~~~~~i~ 838 (903)
.. ..+..+. .+...+..++|++.++.|+.+.+. -..||.+.. ......+.. .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 32 1111121 245568999999987766666555 556666553 111111111 111234578
Q ss_pred EEEEeCCCCEEEEEEC-CCeEEEEECCCCcEE---EEcc--C-----CCCEEEEEEecCCCEEEEEecCCcEEEc
Q 002591 839 SCVFHPTYPSLLVIGC-YQSLELWNMSENKTM---TLTA--H-----EGLIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 839 si~~sp~g~~l~t~s~-dg~I~vwdl~~~~~~---~~~~--h-----~~~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
++.++|....|++-+. +..|.++| ..|+.+ .+.. | -.....|+|.++|++.++ ++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 8999998766666554 56888999 556655 2222 1 125789999999975555 466666655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.5e-05 Score=87.59 Aligned_cols=259 Identities=15% Similarity=0.128 Sum_probs=153.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCce-eEEe
Q 002591 626 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS-LRTF 704 (903)
Q Consensus 626 V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~-~~~~ 704 (903)
++++||+|..-.||.|-.-|.+.+|...+.+.......|..+|..+.|+++|..|+++..-|.|.+|.++-.+.. ...+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 566999999889999999999999998887777778899999999999999999999999999999988732221 1111
Q ss_pred ccCC--C--ceEEEEecCCCCeE-----EEEEeCCCcEE-EEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEE
Q 002591 705 MGHS--A--SVMSLDFHPNKDDL-----ICSCDGDGEIR-YWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI 774 (903)
Q Consensus 705 ~~h~--~--~V~sl~fsp~~~~l-----l~sgs~Dg~I~-iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i 774 (903)
..|. . ..+|...++++..+ +++.+++..+- .++.+.....+.. .-.-.+++..|++++.+|+|+.
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~-----~ksgv~~g~~F~~~~~~GtVyy 216 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD-----EKSGVPKGTEFLFAGKSGTVYY 216 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc-----cccCCCCCcEEEEEcCCceEEE
Confidence 1221 2 23445556654332 12333333332 3333321111111 1122467788899999999998
Q ss_pred EECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC-C---------------CC-c--ce------E-
Q 002591 775 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS-G---------------SE-G--EC------V- 827 (903)
Q Consensus 775 ~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s-~---------------~~-~--~~------i- 827 (903)
.|-.. ++....+.. +. ..+-|.+...-|++.-.+ ++.+|-+.. | .. + .| +
T Consensus 217 vdq~g-~~~~V~k~d-S~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr 293 (1416)
T KOG3617|consen 217 VDQNG-RQRTVHKLD-SE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLR 293 (1416)
T ss_pred EcCCC-cEEEEEEcc-ch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccccccc
Confidence 88443 332222211 11 123344433334433333 333332211 1 00 0 00 0
Q ss_pred ---EEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCc--------EEEEc---cCCCCEEEEEEecCCCEEEE
Q 002591 828 ---HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--------TMTLT---AHEGLIAALAVSTETGYVAS 892 (903)
Q Consensus 828 ---~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~--------~~~~~---~h~~~V~sl~~spdg~~LaS 892 (903)
+.-...+..+.+++++..+..+..|...|.+.+|--.... ...+. ...+.|+.+.|.|-...++.
T Consensus 294 ~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~av 372 (1416)
T KOG3617|consen 294 KSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAV 372 (1416)
T ss_pred CCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhh
Confidence 0001124568899999999999999999999999533221 12222 34567899999885544443
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0018 Score=73.37 Aligned_cols=259 Identities=13% Similarity=0.104 Sum_probs=135.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC---CC---
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN---PG--- 698 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~---~~--- 698 (903)
.|+++.|+++..-|++|...|.|.||.+...+... ......-....|.+- ...++.-.|-|+.. +.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999999999999999999999876432221 000011111111110 00111222333322 11
Q ss_pred --ceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--c---------CceeEEEe-----cCC
Q 002591 699 --YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--G---------GTAQMRFQ-----PHL 760 (903)
Q Consensus 699 --~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~--~---------~~~~v~~s-----p~~ 760 (903)
.+...+....+.|++++.+.-| ++|.|..+|.+.|.|+|....+..-. . .+.++.|. .++
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 2334445567899999998554 88899999999999999877665421 1 23345444 222
Q ss_pred ---CEEEEEEcCCeEEEEECC--C-Ce----EEEEecCCCCCeEEEE-EcCC---------------------CCEEEEE
Q 002591 761 ---GRYLAAAAENVVSILDAE--T-QA----CRLSLQGHTKPIDSVC-WDPS---------------------GELLASV 808 (903)
Q Consensus 761 ---~~ll~~s~dg~I~i~D~~--t-~~----~~~~l~~h~~~V~sl~-~spd---------------------g~~lasg 808 (903)
-.+++|...|.+.+|.+. . +. .......+.++|..|+ |+.+ .-+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 367888889999999764 1 21 1222224566666665 3221 1267777
Q ss_pred eCCeEEEEECCCCCCcceEEEeecCCCceEEEEE-----eCCCCEEEEEECCCeEEEEECCCCcEE-EEcc----CCCCE
Q 002591 809 SEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF-----HPTYPSLLVIGCYQSLELWNMSENKTM-TLTA----HEGLI 878 (903)
Q Consensus 809 s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~-----sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~----h~~~V 878 (903)
+...++|+...+. +..+...........+.+ ...+..|++...+|.|++|.+-.-+.+ .+.- +...+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 7779999998765 333333322223334444 235667888899999999999988777 2222 12245
Q ss_pred EEEEEecCCCEEEEEecC
Q 002591 879 AALAVSTETGYVASASHD 896 (903)
Q Consensus 879 ~sl~~spdg~~LaSgs~D 896 (903)
...+++++|..++-.+..
T Consensus 310 ~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp TT-EE-TTS-EEEE-SSS
T ss_pred cccEECCCCCEEEEeCcc
Confidence 566778888877666543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0026 Score=71.74 Aligned_cols=227 Identities=18% Similarity=0.193 Sum_probs=130.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cC----------------CCCeEEEEECCCCCEEEEEeC
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EH----------------SSLITDVRFSPSMPRLATSSF 685 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~-~h----------------~~~V~~l~fspdg~~Lasgs~ 685 (903)
...+....|||+|+.||... ++.|.+++..++....... +. -+.-..+.||||+++||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 66789999999999999885 6789999987664332211 10 122357889999999887754
Q ss_pred C-Cc-----------------------------------EEEEeCCCCCce-eEEe---ccCCCceEEEEecCCCCeEEE
Q 002591 686 D-KT-----------------------------------VRVWDADNPGYS-LRTF---MGHSASVMSLDFHPNKDDLIC 725 (903)
Q Consensus 686 D-g~-----------------------------------I~IWDl~~~~~~-~~~~---~~h~~~V~sl~fsp~~~~ll~ 725 (903)
| .. +.|+|+.++... +... ..-...+..+.|.+++..+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 3 22 233444432211 1111 123445778889888774443
Q ss_pred -EEeCC---CcEEEEEcCCCeeeEEeec-------CceeEEEe-cCCCEEEEE-EcCC--eEEEEECCCCeEEEEecCCC
Q 002591 726 -SCDGD---GEIRYWSINNGSCTRVFKG-------GTAQMRFQ-PHLGRYLAA-AAEN--VVSILDAETQACRLSLQGHT 790 (903)
Q Consensus 726 -sgs~D---g~I~iwDi~t~~~~~~~~~-------~~~~v~~s-p~~~~ll~~-s~dg--~I~i~D~~t~~~~~~l~~h~ 790 (903)
....+ ..+.++|..++.+...+.. ......+. +++..++.. ..+| .|++++...+... .+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence 33333 3466778877765444321 12345554 666655554 4455 6777788777644 455455
Q ss_pred CCeEE-EEEcCCCCEEE-EEeCC-----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEC
Q 002591 791 KPIDS-VCWDPSGELLA-SVSED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 854 (903)
Q Consensus 791 ~~V~s-l~~spdg~~la-sgs~d-----~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~ 854 (903)
-.|.. +.|+++++.|+ ++..+ .|+..++..+ ..+..+.+....-..+.|+|++++++..+.
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 56644 67888877443 44432 4555666512 334444443333368999999999887654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.011 Score=70.06 Aligned_cols=184 Identities=11% Similarity=0.059 Sum_probs=112.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeccCC-CCeE---E-------EEECCCCCEEEEEeCCCcEEEEeCCCCCceeEE
Q 002591 635 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLIT---D-------VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 703 (903)
Q Consensus 635 g~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~-~~V~---~-------l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~ 703 (903)
+..|++++.++.|+-+|..+++.+-.+.... ..+. + +++ .+..|+.++.|+.|...|.++ ++.+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~T-Gk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKT-GKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCC-CCEEee
Confidence 4477777788899999999999887765321 1111 1 112 234677888899999999988 555544
Q ss_pred ecc--CC--CceEE-EEecCCCCeEEEEEe-----CCCcEEEEEcCCCeeeEEeecCc----------------------
Q 002591 704 FMG--HS--ASVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGGT---------------------- 751 (903)
Q Consensus 704 ~~~--h~--~~V~s-l~fsp~~~~ll~sgs-----~Dg~I~iwDi~t~~~~~~~~~~~---------------------- 751 (903)
+.. +. ..+.+ -.+. ++.+++..+ .+|.|..+|.++++.+-.+....
T Consensus 146 ~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred cccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 331 11 11111 1111 233443222 26899999999998776543210
Q ss_pred -------------eeEEEecCCCEEEEEEcC-----C-----------eEEEEECCCCeEEEEecCCCCCe---------
Q 002591 752 -------------AQMRFQPHLGRYLAAAAE-----N-----------VVSILDAETQACRLSLQGHTKPI--------- 793 (903)
Q Consensus 752 -------------~~v~~sp~~~~ll~~s~d-----g-----------~I~i~D~~t~~~~~~l~~h~~~V--------- 793 (903)
..+.+.+..+.++.+... + .|.-.|++|++.+..+......+
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 023566666777776522 1 67788999999988776522221
Q ss_pred EEEEEcCCCC---EEEEEeCC-eEEEEECCCCCC
Q 002591 794 DSVCWDPSGE---LLASVSED-SVRVWTVGSGSE 823 (903)
Q Consensus 794 ~sl~~spdg~---~lasgs~d-~I~iwdl~s~~~ 823 (903)
.-+.+..+|+ .++.+..+ .+++.|-++++.
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 1122334665 66677777 899999988853
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.01 Score=64.20 Aligned_cols=221 Identities=16% Similarity=0.187 Sum_probs=124.1
Q ss_pred CCCCEEEEEeCCCcEEEEECC-CCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEE--------
Q 002591 633 SDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-------- 703 (903)
Q Consensus 633 pdg~~Latgs~Dg~V~vWd~~-t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~-------- 703 (903)
..++.|+.|+.+| |.+++.. ..+...... ...|..+...++-+.|++-+ |+.|+++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4577999999998 9999983 333333332 22399999999887777766 599999998752211100
Q ss_pred -----eccCCCceEEEE--ecCCCCeEEEEEeCCCcEEEEEcCCC-----eeeEEee--cCceeEEEecCCCEEEEEEcC
Q 002591 704 -----FMGHSASVMSLD--FHPNKDDLICSCDGDGEIRYWSINNG-----SCTRVFK--GGTAQMRFQPHLGRYLAAAAE 769 (903)
Q Consensus 704 -----~~~h~~~V~sl~--fsp~~~~ll~sgs~Dg~I~iwDi~t~-----~~~~~~~--~~~~~v~~sp~~~~ll~~s~d 769 (903)
.......+..++ -...+...++++. ...|.+|.+... +..+.+. .....++|. ++.++++. .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-S 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-C
Confidence 111223344444 1223344443443 558888887653 3344443 455667777 45565555 5
Q ss_pred CeEEEEECCCCeEEEEecCC------------CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCce
Q 002591 770 NVVSILDAETQACRLSLQGH------------TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKF 837 (903)
Q Consensus 770 g~I~i~D~~t~~~~~~l~~h------------~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i 837 (903)
+...++|+.++.....+... ..++..+... ++.+|++. ++.-.+.|. .|.... ...+.- ....
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~-~~~g~fv~~-~G~~~r-~~~i~W-~~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY-DNIGVFVNK-NGEPSR-KSTIQW-SSAP 231 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe-cceEEEEcC-CCCcCc-ccEEEc-CCch
Confidence 55888899877554433211 1233333333 45566543 332333333 332222 122222 2344
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEECCCCcEE
Q 002591 838 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 869 (903)
Q Consensus 838 ~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~ 869 (903)
..+++ ...+|++.+. +.|.||++.+++++
T Consensus 232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lv 260 (275)
T PF00780_consen 232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELV 260 (275)
T ss_pred hEEEE--ECCEEEEECC-CEEEEEECcCCcEE
Confidence 55555 3456776655 56999999999887
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0058 Score=66.15 Aligned_cols=215 Identities=15% Similarity=0.153 Sum_probs=122.8
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeE---------
Q 002591 675 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--------- 745 (903)
Q Consensus 675 pdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~--------- 745 (903)
..++.|+.|+.+| |.+|++.......+... ...|..+...++-+.+++.+ |+.|+++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence 3577899999888 99999943333333332 23399999998877666443 5999999987644332
Q ss_pred ------Eeec--CceeEE--EecCCCEEEEEEcCCeEEEEECCCC-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002591 746 ------VFKG--GTAQMR--FQPHLGRYLAAAAENVVSILDAETQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSE 810 (903)
Q Consensus 746 ------~~~~--~~~~v~--~sp~~~~ll~~s~dg~I~i~D~~t~-----~~~~~l~~h~~~V~sl~~spdg~~lasgs~ 810 (903)
.+.. ++..++ -...+...+++....+|.+|..... +...++. -...+.+++|. ++.|+.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 1111 222222 1234456667777778888876653 3444444 45788899999 677888877
Q ss_pred CeEEEEECCCCCCcceEEEeecCC---------CceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEE
Q 002591 811 DSVRVWTVGSGSEGECVHELSCNG---------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAA 880 (903)
Q Consensus 811 d~I~iwdl~s~~~~~~i~~~~~~~---------~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~s 880 (903)
+...+.|+.++...... ...... .....+.--+++.+|++ .+..-.+.|....... ....-...+.+
T Consensus 157 ~~f~~idl~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~--~~~~g~fv~~~G~~~r~~~i~W~~~p~~ 233 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELL-DPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLC--YDNIGVFVNKNGEPSRKSTIQWSSAPQS 233 (275)
T ss_pred CceEEEecCCCCceEEe-CccCCcchhhhcccCCCceEEEEeCCceEEEE--ecceEEEEcCCCCcCcccEEEcCCchhE
Confidence 78999999866432222 111111 11222222234444443 2334444454433222 11122335556
Q ss_pred EEEecCCCEEEEEecCCcEEEcC
Q 002591 881 LAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 881 l~~spdg~~LaSgs~DG~I~IWd 903 (903)
+++. ..||+..+. +.|.||+
T Consensus 234 ~~~~--~pyli~~~~-~~iEV~~ 253 (275)
T PF00780_consen 234 VAYS--SPYLIAFSS-NSIEVRS 253 (275)
T ss_pred EEEE--CCEEEEECC-CEEEEEE
Confidence 6663 347777655 4488774
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.051 Score=57.14 Aligned_cols=271 Identities=11% Similarity=0.033 Sum_probs=149.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC--CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCce
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 700 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~ 700 (903)
.+-+.++.|+.+ +...+..+.-++|+|+.+...-..+..- .+.-.++. -.|++..++..|.-+.+.|+.++..+
T Consensus 86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCc
Confidence 456777888755 7777777788999999865443333221 12233333 35789988887777889999886654
Q ss_pred e--EEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe---eeEEeecCceeEEEecCCCEEEEEEcCCeEEEE
Q 002591 701 L--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 775 (903)
Q Consensus 701 ~--~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~---~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~ 775 (903)
. ..+.......+.++.+ |+ ..+.+..|+-+.|.|+.... .+..+..+...-..++.+++.++...+..+.+.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvliv 238 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIV 238 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEE
Confidence 3 2333344444667776 34 34466678999999997654 344444332333444555566666666677788
Q ss_pred ECCCCeEEEEecC-CCCCeEEE-EEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 002591 776 DAETQACRLSLQG-HTKPIDSV-CWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 852 (903)
Q Consensus 776 D~~t~~~~~~l~~-h~~~V~sl-~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~ 852 (903)
|..+.+....+.. .+..+.++ .+.-.+++......+ .+-+.|+.+.........+......-..+.. .+.++..+
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yia 316 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIA 316 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEec
Confidence 8777663333321 11222222 233336666666555 6777777665332222222222212222222 22233333
Q ss_pred ECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 853 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 853 s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
..+ ...+.|....+.. ...+....+.+++.+-+.+++.+...++.+.||+
T Consensus 317 dkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 317 DKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred cCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 332 3334444333322 2222233344555555666888888999999985
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.023 Score=65.26 Aligned_cols=189 Identities=14% Similarity=0.131 Sum_probs=99.9
Q ss_pred cEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCC-----ceeEEeccCCCceEEEEecCCC
Q 002591 646 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-----YSLRTFMGHSASVMSLDFHPNK 720 (903)
Q Consensus 646 ~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~-----~~~~~~~~h~~~V~sl~fsp~~ 720 (903)
.|.||+. .|+.+.++.-..+.|.++.|+.+. .|++-..||.+++||+.... ..+....-....|....+..+|
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 4888885 466777766555899999998864 55566689999999996311 0011111111222222333233
Q ss_pred CeEEEEEeCCCcEEEEEcCCCe-eeEEe---ecCce----------eEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 002591 721 DDLICSCDGDGEIRYWSINNGS-CTRVF---KGGTA----------QMRFQPHLGRYLAAAAENVVSILDAETQACRLSL 786 (903)
Q Consensus 721 ~~ll~sgs~Dg~I~iwDi~t~~-~~~~~---~~~~~----------~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l 786 (903)
+++. ..++.|.+.+-.... ..+.+ ..... ...+..+....+....++.+.+.+....+. +
T Consensus 140 --ivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 --IVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred --EEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 3322 234444443322211 11111 11000 012333444444444555555444332211 1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC-CCceEEEEEeCCC
Q 002591 787 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTY 846 (903)
Q Consensus 787 ~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~-~~~i~si~~sp~g 846 (903)
. ..+++..+++||+|++||....+ .+.|....-. +.+.++... ......+.|+-+.
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCC
Confidence 1 24689999999999999988887 7777765332 333343332 3456677776654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=8.3e-06 Score=92.16 Aligned_cols=196 Identities=17% Similarity=0.210 Sum_probs=133.7
Q ss_pred CCeEEEEECCCC--CEEEEEeCCCcEEEEeCCCCCce-eEEeccCCCceEEEEecCCCCeEEEEEe----CCCcEEEEEc
Q 002591 666 SLITDVRFSPSM--PRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSI 738 (903)
Q Consensus 666 ~~V~~l~fspdg--~~Lasgs~Dg~I~IWDl~~~~~~-~~~~~~h~~~V~sl~fsp~~~~ll~sgs----~Dg~I~iwDi 738 (903)
..+.|+++..+. ..+++|..+|.|.+-.++.+... .....++...+++++|.+-...+||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 346677665543 36788899999999988764333 4556678899999999987666776653 3678999999
Q ss_pred CCCe--ee--EE----eecCceeEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEecCCCCCeEEEEEcC-CCCEEEEE
Q 002591 739 NNGS--CT--RV----FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDP-SGELLASV 808 (903)
Q Consensus 739 ~t~~--~~--~~----~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~sp-dg~~lasg 808 (903)
.++- .. .. ...+...+||..+.+.+++|.....+.++|++-. ..... -.+..|..+..+| .+.|+++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCCceecc
Confidence 8761 11 11 1234567889977788888888899999999833 21111 1345677788888 78899988
Q ss_pred eCCeEEEEE-CCCCCCcceEEEeecC----CCceEEEEEeCCCC-EEEEEECC-CeEEEEECCC
Q 002591 809 SEDSVRVWT-VGSGSEGECVHELSCN----GNKFHSCVFHPTYP-SLLVIGCY-QSLELWNMSE 865 (903)
Q Consensus 809 s~d~I~iwd-l~s~~~~~~i~~~~~~----~~~i~si~~sp~g~-~l~t~s~d-g~I~vwdl~~ 865 (903)
.++.|.+|| .++.+. .+..+... ...+..++|+|... .+++...| ++|++||+..
T Consensus 215 ~dg~iAiwD~~rnien--pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIEN--PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccCceeeccchhhhcc--HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 877999999 433221 11111111 23488999999654 34455544 6899999853
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00015 Score=82.52 Aligned_cols=74 Identities=23% Similarity=0.290 Sum_probs=64.5
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 002591 621 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 696 (903)
Q Consensus 621 ~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~ 696 (903)
.....|.|++++|+.+.|+.|+.||.|.+||...+. ..+....-..+.++|+|+|..|++|+..|.|.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 577899999999999999999999999999987653 33334556689999999999999999999999999975
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.004 Score=69.23 Aligned_cols=206 Identities=14% Similarity=0.094 Sum_probs=115.5
Q ss_pred cEEEEeCCCCCceeEEecc-CCCceEEEE---ecCC---CCeEEEEEeC----------CCcEEEEEcCCC-----eeeE
Q 002591 688 TVRVWDADNPGYSLRTFMG-HSASVMSLD---FHPN---KDDLICSCDG----------DGEIRYWSINNG-----SCTR 745 (903)
Q Consensus 688 ~I~IWDl~~~~~~~~~~~~-h~~~V~sl~---fsp~---~~~ll~sgs~----------Dg~I~iwDi~t~-----~~~~ 745 (903)
.|+|.|..+ ...+..+.- ....|++++ |..+ ...+|+.|.. .|.|.++++... ++..
T Consensus 3 ~i~l~d~~~-~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTT-FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTT-SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCC-CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 477888776 334443331 233344443 3322 1456655543 288999999984 3222
Q ss_pred ----EeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEec-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002591 746 ----VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA-CRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTV 818 (903)
Q Consensus 746 ----~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~-~~~~l~-~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl 818 (903)
.+++.+.+++.. +++ ++++.++.|.+|++...+ ....-. .....+.++... +++|+.|..- .|.++.+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 234555555544 566 555556899999988877 433222 123356666655 6688888765 6766655
Q ss_pred CCCCCcceEEEe--ecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCC-------C--cEE--EEccCCCCEEEE---E
Q 002591 819 GSGSEGECVHEL--SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-------N--KTM--TLTAHEGLIAAL---A 882 (903)
Q Consensus 819 ~s~~~~~~i~~~--~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~-------~--~~~--~~~~h~~~V~sl---~ 882 (903)
.... ..+..+ ......++++.|-.+++.++++..+|.|.++.... + +.. ........|+++ +
T Consensus 157 ~~~~--~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 157 DEEN--NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp ETTT--E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred EccC--CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 4321 212222 22345688888886667999999999999998763 2 222 222345667777 4
Q ss_pred Eec--CCC------EEEEEecCCcEEE
Q 002591 883 VST--ETG------YVASASHDKFVKL 901 (903)
Q Consensus 883 ~sp--dg~------~LaSgs~DG~I~I 901 (903)
+.+ .+. .++.++.+|.|.+
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEE
Confidence 444 122 4778888998863
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.013 Score=64.15 Aligned_cols=215 Identities=10% Similarity=0.102 Sum_probs=127.6
Q ss_pred EEECCCCCEEEEE-eCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-
Q 002591 671 VRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK- 748 (903)
Q Consensus 671 l~fspdg~~Lasg-s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~- 748 (903)
..|.++...|+-+ -..+.|.-|+..+... +.+. +...+.++.....+..++ ++. ..+++++++++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g~Lv-~~~--~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGGRLI-ACE--HGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCCeEE-EEc--cccEEEeccCCceeEEecc
Confidence 3466666644444 4477888888875332 3333 233344555444444343 553 457777776665533321
Q ss_pred -------cCceeEEEecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002591 749 -------GGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 810 (903)
Q Consensus 749 -------~~~~~v~~sp~~~~ll~~s~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~ 810 (903)
...+...+.|++...+.... -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+.+..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 12356778888776665544 134555565 45566656655566678999999987776665
Q ss_pred C--eEEEEECCC--CCCc--ceEEEeecCCCceEEEEEeCCCCEEEEEECCC-eEEEEECCCCcEE-EEccCCCCEEEEE
Q 002591 811 D--SVRVWTVGS--GSEG--ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTAHEGLIAALA 882 (903)
Q Consensus 811 d--~I~iwdl~s--~~~~--~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg-~I~vwdl~~~~~~-~~~~h~~~V~sl~ 882 (903)
. .|..|++.. +... .....+....+..-.++...+|.+.+++...| .|.+|+.. ++++ .+.-....+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 4 777777652 2111 11222222345566778888888776555554 99999999 6666 5555558888898
Q ss_pred Ee-cCCCEEEEE
Q 002591 883 VS-TETGYVASA 893 (903)
Q Consensus 883 ~s-pdg~~LaSg 893 (903)
|- ++.+.|+..
T Consensus 262 FgG~~~~~L~iT 273 (307)
T COG3386 262 FGGPDLNTLYIT 273 (307)
T ss_pred EeCCCcCEEEEE
Confidence 84 444544433
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.024 Score=65.43 Aligned_cols=217 Identities=14% Similarity=0.133 Sum_probs=120.9
Q ss_pred eEEEEECCCCCEEEEE-eCCC----cEEEEeCCCCCceeE-EeccCCCceEEEEecCCCCeEEEEEeCC----------C
Q 002591 668 ITDVRFSPSMPRLATS-SFDK----TVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGD----------G 731 (903)
Q Consensus 668 V~~l~fspdg~~Lasg-s~Dg----~I~IWDl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~D----------g 731 (903)
+..++++|++++||.+ +..| .|+|+|+++ ++.+. .+... ....+.|.+++..++++...+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 4468899999988766 3344 499999998 44433 22221 122399999988888776443 2
Q ss_pred cEEEEEcCCCee--eEEeec--C---ceeEEEecCCCEEEEEEc---C-CeEEEEECCCC----eEEEEecCCCCCeE-E
Q 002591 732 EIRYWSINNGSC--TRVFKG--G---TAQMRFQPHLGRYLAAAA---E-NVVSILDAETQ----ACRLSLQGHTKPID-S 795 (903)
Q Consensus 732 ~I~iwDi~t~~~--~~~~~~--~---~~~v~~sp~~~~ll~~s~---d-g~I~i~D~~t~----~~~~~l~~h~~~V~-s 795 (903)
.|++|++.+... ..+|.. . ...+..+.++.++++... + ..|++.|+..+ .....+......+. .
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 378888877643 244433 2 335778889888777554 2 46888898874 22223333333443 3
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCC---eEEEEECC-CCc
Q 002591 796 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMS-ENK 867 (903)
Q Consensus 796 l~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg---~I~vwdl~-~~~ 867 (903)
+... .+.+++....+ .|...++...........+..+...+.-..+...+.+|++...++ .|++|++. +..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4333 44444444443 566677776543222334444444333333444555666655443 79999999 555
Q ss_pred EEEEcc-CCCCEEEEEEecCCC
Q 002591 868 TMTLTA-HEGLIAALAVSTETG 888 (903)
Q Consensus 868 ~~~~~~-h~~~V~sl~~spdg~ 888 (903)
...+.. -.+.|..+...+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-S
T ss_pred EeeecCCcceEEeccCCCCCCC
Confidence 444333 334456655555544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.015 Score=64.68 Aligned_cols=211 Identities=12% Similarity=0.146 Sum_probs=123.6
Q ss_pred cEEEEECCCCceeEEeccC-CCCeEE---EEECCC----CCEEEEEeC----------CCcEEEEeCCCC---CceeEE-
Q 002591 646 KAVLWHTDTLKSKTNLEEH-SSLITD---VRFSPS----MPRLATSSF----------DKTVRVWDADNP---GYSLRT- 703 (903)
Q Consensus 646 ~V~vWd~~t~~~~~~l~~h-~~~V~~---l~fspd----g~~Lasgs~----------Dg~I~IWDl~~~---~~~~~~- 703 (903)
.|+|.|..+.+.+.++.-. ...|++ +.|..+ ..+|++|.. .|.|.++++.+. ...++.
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5888888887777665522 223443 444433 457777743 288999999873 112222
Q ss_pred -eccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe-eeEE--eecCceeEEEecCCCEEEEEEcCCeEEEE--EC
Q 002591 704 -FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRV--FKGGTAQMRFQPHLGRYLAAAAENVVSIL--DA 777 (903)
Q Consensus 704 -~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~-~~~~--~~~~~~~v~~sp~~~~ll~~s~dg~I~i~--D~ 777 (903)
-....++|++|+-. +++++++. ++.|++|++...+ .... +......++....+++++++.....|.++ +.
T Consensus 83 ~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 23457889999877 34455333 5899999998887 4443 33455566666667899999988877776 44
Q ss_pred CCCeEEEE-ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-----C---CcceEEEeecCCCceEEE---EEeC
Q 002591 778 ETQACRLS-LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-----S---EGECVHELSCNGNKFHSC---VFHP 844 (903)
Q Consensus 778 ~t~~~~~~-l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~-----~---~~~~i~~~~~~~~~i~si---~~sp 844 (903)
...+.... -......+++++|-.+++.++++..+ .|.++..... . ....+..+.. +..|+++ .+.+
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l-g~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL-GDIVNSFRRGSLIP 237 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS-
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC-CCccceEEEEEeee
Confidence 32222221 12245678899998666777777777 8888887631 1 1122233332 4556666 4444
Q ss_pred --CCC------EEEEEECCCeEEEE
Q 002591 845 --TYP------SLLVIGCYQSLELW 861 (903)
Q Consensus 845 --~g~------~l~t~s~dg~I~vw 861 (903)
.+. .++.++.+|.|.+.
T Consensus 238 ~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 238 RSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCCcccccceEEEEecCCEEEEE
Confidence 222 38888888888743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0087 Score=66.32 Aligned_cols=240 Identities=13% Similarity=0.111 Sum_probs=118.0
Q ss_pred ECCCCceeEEeccCCCCeE-----EEEECCCCCEEEEEeC-CCc--EEEEeCCCCCceeEEeccCC-CceEEEEecCCCC
Q 002591 651 HTDTLKSKTNLEEHSSLIT-----DVRFSPSMPRLATSSF-DKT--VRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKD 721 (903)
Q Consensus 651 d~~t~~~~~~l~~h~~~V~-----~l~fspdg~~Lasgs~-Dg~--I~IWDl~~~~~~~~~~~~h~-~~V~sl~fsp~~~ 721 (903)
|..||..+..+..+..... .=+|..||+.|+.++. ||. +.+.|+.+ ..+..++... .......++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t--~~i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLAT--GEITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEccc--CEEEECccCCCCCccceEEecCCC
Confidence 5667777777765443333 3356788987666654 554 55667765 3455555433 2233566778877
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeeEEeecC--ce-eEEEe-cCCCEEEEEEc-----------------------CCeEEE
Q 002591 722 DLICSCDGDGEIRYWSINNGSCTRVFKGG--TA-QMRFQ-PHLGRYLAAAA-----------------------ENVVSI 774 (903)
Q Consensus 722 ~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~--~~-~v~~s-p~~~~ll~~s~-----------------------dg~I~i 774 (903)
.+++.. .+..|+..|+++.+....+..+ .. ...|. ..+...+++.. ...|..
T Consensus 94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 666543 4568899999998765555432 22 23443 22333343322 235667
Q ss_pred EECCCCeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC---e--EEEEECCCCCC-cceEEEeecCCCceEEEEEeCCCC
Q 002591 775 LDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED---S--VRVWTVGSGSE-GECVHELSCNGNKFHSCVFHPTYP 847 (903)
Q Consensus 775 ~D~~t~~~~~~l~~h~~~V~sl~~spdg~-~lasgs~d---~--I~iwdl~s~~~-~~~i~~~~~~~~~i~si~~sp~g~ 847 (903)
.|+.+++....+. ...++..+-|+|... +|+-|-++ . -|||-+++... .+.++... ....+..=-|.++|.
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGS 250 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS
T ss_pred EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCC
Confidence 7888887665555 567788999999655 55555554 3 38888875422 22222211 122344445899998
Q ss_pred EEEEEEC-----CCeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecC
Q 002591 848 SLLVIGC-----YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 896 (903)
Q Consensus 848 ~l~t~s~-----dg~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~D 896 (903)
.|..-+. +..|.-+|+.+++...+..- .....+-.++||++++-=+.|
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCC
Confidence 8766443 33677788888765533222 234456667899887764444
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.099 Score=64.11 Aligned_cols=237 Identities=8% Similarity=0.002 Sum_probs=122.7
Q ss_pred CeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCC------CcEEEEe
Q 002591 625 KVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWD 693 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs~D-----g~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~I~IWD 693 (903)
.+..+.|+|||++||.+... ..|++.|+.+++.+........ ..++|.+|++.|+.+..+ ..|++|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678899999988876432 3588999988764333222222 459999999876665442 3688888
Q ss_pred CCCCC-ceeEEeccCCCceE-EEEecCCCCeEEEEEeC--CCcEEEEEcC--CCeeeEEeec-CceeEEEecCCCEEEEE
Q 002591 694 ADNPG-YSLRTFMGHSASVM-SLDFHPNKDDLICSCDG--DGEIRYWSIN--NGSCTRVFKG-GTAQMRFQPHLGRYLAA 766 (903)
Q Consensus 694 l~~~~-~~~~~~~~h~~~V~-sl~fsp~~~~ll~sgs~--Dg~I~iwDi~--t~~~~~~~~~-~~~~v~~sp~~~~ll~~ 766 (903)
+.++. .....+........ .+..+.++..+++.+.. ++.+.+|+.. .+.....+.. ......+...++.++..
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~ 285 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLR 285 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEE
Confidence 88742 22333433333333 33334466766644433 4678999853 3332222221 11112222333444444
Q ss_pred EcC----CeEEEEECCC-CeEEEEecCC-C-CCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEee-cCCC
Q 002591 767 AAE----NVVSILDAET-QACRLSLQGH-T-KPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELS-CNGN 835 (903)
Q Consensus 767 s~d----g~I~i~D~~t-~~~~~~l~~h-~-~~V~sl~~spdg~~lasgs~d---~I~iwdl~s~~~~~~i~~~~-~~~~ 835 (903)
+.. ..|...++.. ++.. .+..+ . ..|..+.+.. +.++++...+ .+++++.... .+..+. ....
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~-~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~ 359 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWE-ELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPA 359 (686)
T ss_pred EcCCCCCceEEEecCCCcccCe-EEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCc
Confidence 432 2444455552 2222 23333 3 3677888872 3455555544 4666665432 222222 1122
Q ss_pred ceEEEEEe--CCCC-EEEEEECC---CeEEEEECCCCcEE
Q 002591 836 KFHSCVFH--PTYP-SLLVIGCY---QSLELWNMSENKTM 869 (903)
Q Consensus 836 ~i~si~~s--p~g~-~l~t~s~d---g~I~vwdl~~~~~~ 869 (903)
.+..+.++ +++. .+++.++. +.|+.||+.+++..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 360 YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 23333344 3444 33333332 58999999877644
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.019 Score=65.93 Aligned_cols=188 Identities=9% Similarity=0.122 Sum_probs=98.4
Q ss_pred cEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-----cCceeEE----Eec
Q 002591 688 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMR----FQP 758 (903)
Q Consensus 688 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~-----~~~~~v~----~sp 758 (903)
.|+||+.. +..+..+.-..+.|.++.|..+ ..++ +-..||.+++||+.... ...+. ..+.... +..
T Consensus 62 ~I~iys~s--G~ll~~i~w~~~~iv~~~wt~~-e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSS--GKLLSSIPWDSGRIVGMGWTDD-EELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCC--CCEeEEEEECCCCEEEEEECCC-CeEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence 47788776 3445444433378999999875 4455 55679999999987333 11111 1111111 122
Q ss_pred CCCEEEEEEcCCeEEEEECCCCe-EEEEe---cCCCC------CeE-EEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 002591 759 HLGRYLAAAAENVVSILDAETQA-CRLSL---QGHTK------PID-SVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 826 (903)
Q Consensus 759 ~~~~ll~~s~dg~I~i~D~~t~~-~~~~l---~~h~~------~V~-sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~ 826 (903)
..+ +++-..++.|++..--... ....+ ..... .+. ...++.+....+....+ .+.+.+-...
T Consensus 137 ~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~----- 210 (410)
T PF04841_consen 137 KNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF----- 210 (410)
T ss_pred CCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc-----
Confidence 234 3333445555554332221 11111 11000 000 02234444444444443 5553433211
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEcc-CCCCEEEEEEecCCC
Q 002591 827 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTA-HEGLIAALAVSTETG 888 (903)
Q Consensus 827 i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~-h~~~V~sl~~spdg~ 888 (903)
..+. ..+++..++++|++++|+.-..+|.+.|....-.+.. .+.. -......+.|.-+..
T Consensus 211 -~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 211 -KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred -cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 0011 2468999999999999999999999999877655554 2222 234566677765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00085 Score=76.07 Aligned_cols=221 Identities=15% Similarity=0.122 Sum_probs=114.0
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe--cc------CCCCeEEEEECC-----CC-
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EE------HSSLITDVRFSP-----SM- 677 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l--~~------h~~~V~~l~fsp-----dg- 677 (903)
.|.+...++...++|++++.|.-| ++|.|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 478888888889999999998655 9999999999999999876666552 22 345688898852 32
Q ss_pred --CEEEEEeCCCcEEEEeCCC-C-CceeEEec----cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec
Q 002591 678 --PRLATSSFDKTVRVWDADN-P-GYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 749 (903)
Q Consensus 678 --~~Lasgs~Dg~I~IWDl~~-~-~~~~~~~~----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~ 749 (903)
-+|++|...|.+.+|.+.- . +.-...+. .+.+.|.. |..+|..+++.......
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~-------------------I~~i~~~~G~~a~At~~ 214 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILS-------------------IIPINADTGESALATIS 214 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----E-------------------EEEEETTT--B-B-BHH
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEE-------------------EEEEECCCCCcccCchh
Confidence 3688888889999997741 1 11000010 11122221 22334444432111100
Q ss_pred CceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEc-----CCCCEEEEEeCC-eEEEEECCCCCC
Q 002591 750 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD-----PSGELLASVSED-SVRVWTVGSGSE 823 (903)
Q Consensus 750 ~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~s-----pdg~~lasgs~d-~I~iwdl~s~~~ 823 (903)
....+.-...-..+++.+.+..|+++...+.+..++.......+..+++- ..+..|++-..+ .|++|.+-..
T Consensus 215 ~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-- 292 (395)
T PF08596_consen 215 AMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-- 292 (395)
T ss_dssp HHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---
T ss_pred HhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc--
Confidence 00000000011346677778999999999888777665332334445553 245567777777 9999999765
Q ss_pred cceEEEeecC----CCceEEEEEeCCCCEEEEEECC
Q 002591 824 GECVHELSCN----GNKFHSCVFHPTYPSLLVIGCY 855 (903)
Q Consensus 824 ~~~i~~~~~~----~~~i~si~~sp~g~~l~t~s~d 855 (903)
+.+..+... ...+..+.++++|..++..+..
T Consensus 293 -kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 293 -KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp --EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS
T ss_pred -hHhhcccCCCccccccccccEECCCCCEEEEeCcc
Confidence 334333331 1234556778888876666544
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.013 Score=71.20 Aligned_cols=207 Identities=9% Similarity=0.112 Sum_probs=125.5
Q ss_pred eCCCcEEEEeCCCCCceeEEeccCCCc-eEEEEecC-----CCCeEEEEEeCCCcEEEEEcCCCe--eeE----EeecC-
Q 002591 684 SFDKTVRVWDADNPGYSLRTFMGHSAS-VMSLDFHP-----NKDDLICSCDGDGEIRYWSINNGS--CTR----VFKGG- 750 (903)
Q Consensus 684 s~Dg~I~IWDl~~~~~~~~~~~~h~~~-V~sl~fsp-----~~~~ll~sgs~Dg~I~iwDi~t~~--~~~----~~~~~- 750 (903)
.....|+-.|++. ++++..+..|... |..++-.. .....+ .|-.+..|+.||.|-.. ++. .+...
T Consensus 501 ~~~~~ly~mDLe~-GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 501 NNPNKLYKMDLER-GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCceEEEecCC-CcEEEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeeccccccccCC
Confidence 3467899999998 8889998877654 55543221 122233 67778999999998643 331 12111
Q ss_pred ceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC--CCC------
Q 002591 751 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG--SGS------ 822 (903)
Q Consensus 751 ~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~--s~~------ 822 (903)
...+......++|++|+.+|.|++||-...+....+.+-..+|..|+.+.||++|++.|...|.+++.. .+.
T Consensus 579 ~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~~~~g~~~g~~G 658 (794)
T PF08553_consen 579 NFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTLIKDGKNSGKLG 658 (794)
T ss_pred CceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEeeecCCccCccc
Confidence 122223445589999999999999995433444445667899999999999999998888888888753 110
Q ss_pred ---------C--cceEEEee----------cCCCceEEEEEeC---CCCEEEEEECCCeEEEEECCC---C--cEEEEcc
Q 002591 823 ---------E--GECVHELS----------CNGNKFHSCVFHP---TYPSLLVIGCYQSLELWNMSE---N--KTMTLTA 873 (903)
Q Consensus 823 ---------~--~~~i~~~~----------~~~~~i~si~~sp---~g~~l~t~s~dg~I~vwdl~~---~--~~~~~~~ 873 (903)
. ...+..-. .....++...|+. .....++++....+.+|++.. + .+..+..
T Consensus 659 F~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~kV~~g~~~~Y~ikr 738 (794)
T PF08553_consen 659 FEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKKVKRGKKDPYQIKR 738 (794)
T ss_pred cccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHHHHhCCCCCceEEEE
Confidence 0 01111100 1112234445542 124466667778999999853 2 2334444
Q ss_pred CCCCEEEE--EEecCCCEEEE
Q 002591 874 HEGLIAAL--AVSTETGYVAS 892 (903)
Q Consensus 874 h~~~V~sl--~~spdg~~LaS 892 (903)
....|.+- .|..+.+.|++
T Consensus 739 y~~~V~~dnF~fg~d~~viva 759 (794)
T PF08553_consen 739 YDENVVADNFKFGSDKNVIVA 759 (794)
T ss_pred cCCceEEccceeCCCCcEEEE
Confidence 44555554 44445444443
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00037 Score=79.34 Aligned_cols=98 Identities=12% Similarity=0.133 Sum_probs=80.9
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeE-EEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 002591 620 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT-DVRFSPSMPRLATSSFDKTVRVWDADNPG 698 (903)
Q Consensus 620 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~-~l~fspdg~~Lasgs~Dg~I~IWDl~~~~ 698 (903)
+.-.-.|.-+.|+|.-.+||++..+|.|.+..+. ...+.++..|...|+ +++|.|||+.||+|-.||+|++.|++++.
T Consensus 17 ~~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 17 MSLPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred hccccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 3345578899999999999999999999999988 788889988888888 99999999999999999999999999854
Q ss_pred ceeEEeccCCCceEEEEecC
Q 002591 699 YSLRTFMGHSASVMSLDFHP 718 (903)
Q Consensus 699 ~~~~~~~~h~~~V~sl~fsp 718 (903)
............|.++.|.+
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 43333333456677777763
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.095 Score=62.20 Aligned_cols=146 Identities=12% Similarity=0.082 Sum_probs=85.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccC--C--CCeEEEEECCCCCEEEEEe------CCCcEEEEeCCCCCceeEEec
Q 002591 636 KLLATGGHDKKAVLWHTDTLKSKTNLEEH--S--SLITDVRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRTFM 705 (903)
Q Consensus 636 ~~Latgs~Dg~V~vWd~~t~~~~~~l~~h--~--~~V~~l~fspdg~~Lasgs------~Dg~I~IWDl~~~~~~~~~~~ 705 (903)
..|+.++.|+.|.-+|.++++.+-..... . ..+++--.--++ .|+++. .+|.|+.+|.++ ++.+-.+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~T-G~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKT-GKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCC-CceeEecc
Confidence 46777888999999999999988776532 1 111110000133 444443 268899999987 44443322
Q ss_pred cC-------------------------------CCceE-EEEecCCCCeEEEEEeC----CC-----------cEEEEEc
Q 002591 706 GH-------------------------------SASVM-SLDFHPNKDDLICSCDG----DG-----------EIRYWSI 738 (903)
Q Consensus 706 ~h-------------------------------~~~V~-sl~fsp~~~~ll~sgs~----Dg-----------~I~iwDi 738 (903)
.- ...|+ .+.+.+..+.+++-.+. ++ .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 11 01121 23566654434332222 12 6778899
Q ss_pred CCCeeeEEeecC----------cee--EEEecCCC---EEEEEEcCCeEEEEECCCCeEE
Q 002591 739 NNGSCTRVFKGG----------TAQ--MRFQPHLG---RYLAAAAENVVSILDAETQACR 783 (903)
Q Consensus 739 ~t~~~~~~~~~~----------~~~--v~~sp~~~---~ll~~s~dg~I~i~D~~t~~~~ 783 (903)
++++.+-.|..- ... +.+..+++ .++.+..+|.++++|.++++.+
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 999988776531 111 22224554 4567778999999999999886
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.25 Score=56.29 Aligned_cols=260 Identities=14% Similarity=0.146 Sum_probs=144.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCce----eEEeccCCCCeEEEEECC----CCCEEEEEeCCCcEEEEeCCCCC--------
Q 002591 635 GKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRFSP----SMPRLATSSFDKTVRVWDADNPG-------- 698 (903)
Q Consensus 635 g~~Latgs~Dg~V~vWd~~t~~~----~~~l~~h~~~V~~l~fsp----dg~~Lasgs~Dg~I~IWDl~~~~-------- 698 (903)
...|++|+..|.++||+...... +..-..-..+|..|..-. .....++.=.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 35899999999999999753221 111123456777777532 22233333557778888873211
Q ss_pred ceeEEeccCC--CceEEEEecCC----CCeEEEEEeCCCcEEEEEcCCCeeeEEeec--CceeEEEecCCCEEEEEEcCC
Q 002591 699 YSLRTFMGHS--ASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAEN 770 (903)
Q Consensus 699 ~~~~~~~~h~--~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~--~~~~v~~sp~~~~ll~~s~dg 770 (903)
..+.....|. .....+++-|- ++.+||+-+.||.+.+|+-+.....+.+.. -...++|.+..+.|++++++.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~ 196 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW 196 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
Confidence 1233333343 23334444332 357889999999999999877665555544 245688999999999999998
Q ss_pred eEEEEECCC--------------------Ce---EEEEecCCCCCeEE---EEEcCCCCEEEEEeCCeEEEEECCCCCCc
Q 002591 771 VVSILDAET--------------------QA---CRLSLQGHTKPIDS---VCWDPSGELLASVSEDSVRVWTVGSGSEG 824 (903)
Q Consensus 771 ~I~i~D~~t--------------------~~---~~~~l~~h~~~V~s---l~~spdg~~lasgs~d~I~iwdl~s~~~~ 824 (903)
.|..|.... ++ +-.++. -...+.. +.++.....|++-++.++.+.+-. | ..
T Consensus 197 ~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G-~l 273 (418)
T PF14727_consen 197 TLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G-SL 273 (418)
T ss_pred eEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-eE
Confidence 888885321 00 011111 1122223 333333445666666666666653 2 23
Q ss_pred ceEEEeecCCCceEEEEEeC----CC---CEEEEEECCCeEEEEECCCCcEEEEccCCCCEEEEEE---ecCCCEEEEEe
Q 002591 825 ECVHELSCNGNKFHSCVFHP----TY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAV---STETGYVASAS 894 (903)
Q Consensus 825 ~~i~~~~~~~~~i~si~~sp----~g---~~l~t~s~dg~I~vwdl~~~~~~~~~~h~~~V~sl~~---spdg~~LaSgs 894 (903)
+..+.+.. .+...+.|.- ++ ..+++++.++.+.||.=.+ ++.-........++.. ..-...|++-+
T Consensus 274 ~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls 349 (418)
T PF14727_consen 274 RFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQLPHVPVALSVANFNGLKGLIVSLS 349 (418)
T ss_pred EEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecCCCCCCEEEEecccCCCCceEEEEc
Confidence 33333322 2222222221 22 2488999999999986332 2211111222223332 23345788888
Q ss_pred cCCcEEE
Q 002591 895 HDKFVKL 901 (903)
Q Consensus 895 ~DG~I~I 901 (903)
.+|.|.+
T Consensus 350 ~~G~L~v 356 (418)
T PF14727_consen 350 DEGQLSV 356 (418)
T ss_pred CCCcEEE
Confidence 8888865
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.07 Score=59.77 Aligned_cols=219 Identities=11% Similarity=0.110 Sum_probs=106.5
Q ss_pred CCCEEEEEe-CCCcEEEEECCC----CceeEEecc---CC----CCeEEEEECCCCCEEEEEeC------CCcEEEEeCC
Q 002591 634 DGKLLATGG-HDKKAVLWHTDT----LKSKTNLEE---HS----SLITDVRFSPSMPRLATSSF------DKTVRVWDAD 695 (903)
Q Consensus 634 dg~~Latgs-~Dg~V~vWd~~t----~~~~~~l~~---h~----~~V~~l~fspdg~~Lasgs~------Dg~I~IWDl~ 695 (903)
+.++|+..+ ..+.|+|+|+.+ .+..++++. +. ..-..+..-|+|..++++-. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 678999999873 344555542 11 12233444578988887622 2457788877
Q ss_pred CCCceeEEeccC---CCceEEEEecCCCCeEEEEEe--------------------CCCcEEEEEcCCCeeeEEeecC--
Q 002591 696 NPGYSLRTFMGH---SASVMSLDFHPNKDDLICSCD--------------------GDGEIRYWSINNGSCTRVFKGG-- 750 (903)
Q Consensus 696 ~~~~~~~~~~~h---~~~V~sl~fsp~~~~ll~sgs--------------------~Dg~I~iwDi~t~~~~~~~~~~-- 750 (903)
+ ......+... ...-+.+-|.|..+.+| |.. ...++.+||+.+.+.+.++.-+
T Consensus 166 t-f~v~g~We~~~~~~~~gYDfw~qpr~nvMi-SSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 T-FEVKGRWEKDRGPQPFGYDFWYQPRHNVMI-SSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T---EEEE--SB-TT------EEEETTTTEEE-E-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred c-ccccceeccCCCCCCCCCCeEEcCCCCEEE-EeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 5 3444444432 33456788888766444 542 2467999999999999988754
Q ss_pred ---ceeEEEe--cCCCEEEEEE-cCCeEEEE-ECCCC----eEEEEecCC-----------------CCCeEEEEEcCCC
Q 002591 751 ---TAQMRFQ--PHLGRYLAAA-AENVVSIL-DAETQ----ACRLSLQGH-----------------TKPIDSVCWDPSG 802 (903)
Q Consensus 751 ---~~~v~~s--p~~~~ll~~s-~dg~I~i~-D~~t~----~~~~~l~~h-----------------~~~V~sl~~spdg 802 (903)
...++|. |+..+-++++ -...|..| ..+.+ +.+..+... ..-|+.|.++.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 2345654 4444444433 34555554 33444 223333211 2447899999999
Q ss_pred CEEEEEeCC--eEEEEECCCCCCcceEEEeecCC----------------CceEEEEEeCCCCEEEEEEC
Q 002591 803 ELLASVSED--SVRVWTVGSGSEGECVHELSCNG----------------NKFHSCVFHPTYPSLLVIGC 854 (903)
Q Consensus 803 ~~lasgs~d--~I~iwdl~s~~~~~~i~~~~~~~----------------~~i~si~~sp~g~~l~t~s~ 854 (903)
++|+.++-- .|+.||+......+.+..+...+ +....+..|.||+.|++..+
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 988888765 89999999877766665443211 12356778899999888753
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0053 Score=68.87 Aligned_cols=127 Identities=13% Similarity=0.132 Sum_probs=90.5
Q ss_pred EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCC--------EEEEEeCCeEEEEECCCCCCcceEEEeecC----
Q 002591 766 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE--------LLASVSEDSVRVWTVGSGSEGECVHELSCN---- 833 (903)
Q Consensus 766 ~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~--------~lasgs~d~I~iwdl~s~~~~~~i~~~~~~---- 833 (903)
+.....++-.|++.|+.+.++.-+.. |+-+.+.|+.+ .|+..+...|.-||.+-.... .+.....|
T Consensus 352 ~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q~kqy~~ 429 (644)
T KOG2395|consen 352 GGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQSKQYST 429 (644)
T ss_pred CCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeeecccccc
Confidence 34457899999999999999987766 77778888654 344444448999999854321 22222221
Q ss_pred CCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE--EEccCCCCEEEEEEecCCCEEEEEecC
Q 002591 834 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHD 896 (903)
Q Consensus 834 ~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~--~~~~h~~~V~sl~~spdg~~LaSgs~D 896 (903)
...+.|++-..+| +|++|+.+|.|++||- .++.. .+++...+|..|..+.+|++|+..|..
T Consensus 430 k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 430 KNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred ccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 3345555555554 7999999999999997 44333 678889999999999999998876644
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.02 Score=68.39 Aligned_cols=210 Identities=16% Similarity=0.173 Sum_probs=113.1
Q ss_pred CCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEe------CCC--cEEEEeCCCCCceeEEeccCCCceEEEE
Q 002591 644 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS------FDK--TVRVWDADNPGYSLRTFMGHSASVMSLD 715 (903)
Q Consensus 644 Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs------~Dg--~I~IWDl~~~~~~~~~~~~h~~~V~sl~ 715 (903)
+|.+.-.+-.....+.-..+....+...+++|+|+.++... .|. .|.+++.. +.......+. ..+.-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g~--~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEGH--SLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecCC--CCCCce
Confidence 55554443222222222223334688999999999887765 244 44444543 3332223332 377889
Q ss_pred ecCCCCeEEEEEe-----------CCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEE---EECCCCe
Q 002591 716 FHPNKDDLICSCD-----------GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI---LDAETQA 781 (903)
Q Consensus 716 fsp~~~~ll~sgs-----------~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i---~D~~t~~ 781 (903)
|+|++..+.+... ..+.+.+.+++.+.....+.+.+..+.|+|++.+++... ++.|++ .....+.
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 9999775543322 223455556655544335566799999999999988876 477777 4544454
Q ss_pred EEE----Eec-CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCC
Q 002591 782 CRL----SLQ-GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 856 (903)
Q Consensus 782 ~~~----~l~-~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg 856 (903)
... .+. +-...+.++.|..++.+++........+|.+.-.........-......+..++-.+. .|++...++
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred eeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 111 122 2333468899999998664433223334443322111111011111344556665542 466666666
Q ss_pred eEEE
Q 002591 857 SLEL 860 (903)
Q Consensus 857 ~I~v 860 (903)
.+.+
T Consensus 561 ~~~l 564 (591)
T PRK13616 561 VLQL 564 (591)
T ss_pred eEEe
Confidence 4433
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.33 Score=58.82 Aligned_cols=271 Identities=15% Similarity=0.129 Sum_probs=155.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCceeEEe--ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHT--DTLKSKTNL--EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 698 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~--~t~~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~ 698 (903)
...|.-.+|-.|..+|.++..||.+.-|-+ .++..-..- .-...++.--.|+..++.-+.++.|.-..+|.-+. .
T Consensus 583 PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-k 661 (1096)
T KOG1897|consen 583 PRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-K 661 (1096)
T ss_pred chheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-c
Confidence 345666777777889999999999876654 444332222 23455677777877766655666677777776653 2
Q ss_pred ceeEEeccCCCceEEEE-ecC-CCCeEEEEEeCCCcEEEEEcCCCe--eeEEe--ecCceeEEEecCCCEEEEEEc----
Q 002591 699 YSLRTFMGHSASVMSLD-FHP-NKDDLICSCDGDGEIRYWSINNGS--CTRVF--KGGTAQMRFQPHLGRYLAAAA---- 768 (903)
Q Consensus 699 ~~~~~~~~h~~~V~sl~-fsp-~~~~ll~sgs~Dg~I~iwDi~t~~--~~~~~--~~~~~~v~~sp~~~~ll~~s~---- 768 (903)
.+...+. . ..+..+| |+. .....++++. .+.+++.-+..-. .+++. ......+++.+..-.+.+.+.
T Consensus 662 Lv~spls-~-kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~ 738 (1096)
T KOG1897|consen 662 LVYSPLS-L-KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIES 738 (1096)
T ss_pred EEEeccc-h-HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEeccccc
Confidence 2222111 1 1111111 221 1223444444 5667777665432 12222 234455666663333333322
Q ss_pred -------C---CeEEEEECCCCeEEEEecCC-CC---CeEEEEEcCC-CCEEEEEeC-----------CeEEEEECCCCC
Q 002591 769 -------E---NVVSILDAETQACRLSLQGH-TK---PIDSVCWDPS-GELLASVSE-----------DSVRVWTVGSGS 822 (903)
Q Consensus 769 -------d---g~I~i~D~~t~~~~~~l~~h-~~---~V~sl~~spd-g~~lasgs~-----------d~I~iwdl~s~~ 822 (903)
+ ..++++|-.+.+.+...+-. .. .|.++.|..| +.++++|+. +.|.||.+....
T Consensus 739 ~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~ 818 (1096)
T KOG1897|consen 739 SAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN 818 (1096)
T ss_pred chhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC
Confidence 1 24677777777665543321 12 3455568887 557777652 257777776655
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecCCcEEE
Q 002591 823 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 901 (903)
Q Consensus 823 ~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~I 901 (903)
..+.+.+....+ .+.++..- +|+++ ++-...|++|++.+++.+ ....|...+..+...-.+..|+.|.-=++|.+
T Consensus 819 ~L~~v~e~~v~G-av~aL~~f-ngkll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 819 SLELVAETVVKG-AVYALVEF-NGKLL--AGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred ceeeeeeeeecc-ceeehhhh-CCeEE--EecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 555555555433 33333321 34433 445568999999998666 55578888999999888999998876666543
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.19 Score=61.60 Aligned_cols=198 Identities=11% Similarity=0.012 Sum_probs=103.8
Q ss_pred CCeEEEEECCCCCEEEEEeC-C----CcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCC-----CcEEE
Q 002591 666 SLITDVRFSPSMPRLATSSF-D----KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRY 735 (903)
Q Consensus 666 ~~V~~l~fspdg~~Lasgs~-D----g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D-----g~I~i 735 (903)
-.+..+.|+||+++|+.+.. + -.|++.|+.++......+.+ .. ..++|.++++.++++...+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 45778899999998887643 2 34888899863222222322 11 4599999988888765533 36888
Q ss_pred EEcCCC--eeeEEeecC---ce-eEEEecCCCEEEEEEc---CCeEEEEECC--CCeEEEEecCCCCCeEEEEEcCCCCE
Q 002591 736 WSINNG--SCTRVFKGG---TA-QMRFQPHLGRYLAAAA---ENVVSILDAE--TQACRLSLQGHTKPIDSVCWDPSGEL 804 (903)
Q Consensus 736 wDi~t~--~~~~~~~~~---~~-~v~~sp~~~~ll~~s~---dg~I~i~D~~--t~~~~~~l~~h~~~V~sl~~spdg~~ 804 (903)
+++.++ +....+... .. .+..+.++..+++.+. ++.+.+++.. ++.....+.........+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 899887 444444431 22 1223336666665544 4578888843 3332222222222222222 333333
Q ss_pred EEEEeCC--e--EEEEECCCCCCcceEEEeecC--CCceEEEEEeCCCCEEEEE-ECCC--eEEEEECCCCcEEEEc
Q 002591 805 LASVSED--S--VRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPSLLVI-GCYQ--SLELWNMSENKTMTLT 872 (903)
Q Consensus 805 lasgs~d--~--I~iwdl~s~~~~~~i~~~~~~--~~~i~si~~sp~g~~l~t~-s~dg--~I~vwdl~~~~~~~~~ 872 (903)
++....+ . |...++.... . ...+..+ ...+..+.+. +++|+.. ..++ .|++++..+++...+.
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~--~-~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQ--Q-WEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcc--c-CeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence 3333322 3 4444443211 1 1222222 3367777776 3345444 4455 4566666555444433
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0011 Score=46.50 Aligned_cols=38 Identities=32% Similarity=0.543 Sum_probs=34.2
Q ss_pred eeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 002591 614 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 651 (903)
Q Consensus 614 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd 651 (903)
+....+..|...|++++|.+++.++++++.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.096 Score=53.42 Aligned_cols=203 Identities=11% Similarity=0.085 Sum_probs=109.0
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecC-CCC-eEEEEEeCCCcEEEEEcCC--CeeeEEee------
Q 002591 679 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP-NKD-DLICSCDGDGEIRYWSINN--GSCTRVFK------ 748 (903)
Q Consensus 679 ~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp-~~~-~ll~sgs~Dg~I~iwDi~t--~~~~~~~~------ 748 (903)
++.+--..|.|.-||+........++.+.. +.++.+-- ++. .+.+.|+..-.|.-||... .+..+++.
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 444444466777788886333333333322 22232221 222 3444555555566677432 22333321
Q ss_pred --cCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC--------CCeEEEEEcCCCCEEE-EEeCC-eEEEE
Q 002591 749 --GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT--------KPIDSVCWDPSGELLA-SVSED-SVRVW 816 (903)
Q Consensus 749 --~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~--------~~V~sl~~spdg~~la-sgs~d-~I~iw 816 (903)
...+.-..+|++.++.-.-.|-. .++....+....-+.+|. .--+.++|+.+.+.+. +-+.+ +|.-|
T Consensus 107 kknR~NDgkvdP~Gryy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred HhcccccCccCCCCceeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 12334557788777443333311 122333333333333332 2235688998877444 45555 78778
Q ss_pred E--CCCCCC--cceEEEeecC---C-CceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEe
Q 002591 817 T--VGSGSE--GECVHELSCN---G-NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 884 (903)
Q Consensus 817 d--l~s~~~--~~~i~~~~~~---~-~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~s 884 (903)
| ..++.. .+.+..++.. + -..-.++...+|..++++-..++|..+|..+|+++ ++.-....|+++||-
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 8 444422 2333333221 1 11223445667887788888889999999999988 666678899999995
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0069 Score=73.37 Aligned_cols=127 Identities=12% Similarity=0.115 Sum_probs=89.4
Q ss_pred cCCeEEEEECCCCeEEEEecCCCCC-eEEEEEcC------CCCEEEEEeCCeEEEEECCCCCCcceEEE-e--ecCCCce
Q 002591 768 AENVVSILDAETQACRLSLQGHTKP-IDSVCWDP------SGELLASVSEDSVRVWTVGSGSEGECVHE-L--SCNGNKF 837 (903)
Q Consensus 768 ~dg~I~i~D~~t~~~~~~l~~h~~~-V~sl~~sp------dg~~lasgs~d~I~iwdl~s~~~~~~i~~-~--~~~~~~i 837 (903)
..+.|+-.|+++|+.+..+..|... |..++-.. ....|+..+.+.+..||.|-.. .+++.. . -.....+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~-~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG-NKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC-CceeeccccccccCCCc
Confidence 3578999999999999999987654 55554321 2234555555599999998653 223211 1 1234557
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecC
Q 002591 838 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 896 (903)
Q Consensus 838 ~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~D 896 (903)
.|++-+.+| +||+|+.+|.|++||--..+.. .+.+-..+|.+|+++.||+||+..|..
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 777776666 6999999999999995432222 566778999999999999998877644
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.016 Score=52.60 Aligned_cols=101 Identities=20% Similarity=0.230 Sum_probs=67.3
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCcee
Q 002591 626 VICCHFSS---DG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 701 (903)
Q Consensus 626 V~~l~fsp---dg-~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~ 701 (903)
|+++++.. || +.|++|+.|..|+||+-+ +.+..+..+ +.|++++-... ..|+.+-.+|+|-+|+-.. .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~---Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQ---RL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcc---ee
Confidence 56666654 44 489999999999999843 566666554 45777777665 5799999999999998643 22
Q ss_pred EEeccCCCceEEEEecC---CCCeEEEEEeCCCcEE
Q 002591 702 RTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIR 734 (903)
Q Consensus 702 ~~~~~h~~~V~sl~fsp---~~~~ll~sgs~Dg~I~ 734 (903)
...+. ...++++++.. +|..-|++|-.+|.|-
T Consensus 75 WRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22222 22366665543 3444455888788774
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.29 Score=55.70 Aligned_cols=88 Identities=20% Similarity=0.325 Sum_probs=58.2
Q ss_pred EEEEcCCCCEEEEEeCCCcEEE---EECC-CC----ceeEEecc---CC--CCeEEEEEC-----------CCCCEEEEE
Q 002591 628 CCHFSSDGKLLATGGHDKKAVL---WHTD-TL----KSKTNLEE---HS--SLITDVRFS-----------PSMPRLATS 683 (903)
Q Consensus 628 ~l~fspdg~~Latgs~Dg~V~v---Wd~~-t~----~~~~~l~~---h~--~~V~~l~fs-----------pdg~~Lasg 683 (903)
+++.+|++++||.+..+..|.+ |+.. .+ .......+ +. ..|+++.|- +|...|++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5678899999999988877665 6442 11 12222211 21 567777763 345689999
Q ss_pred eCCCcEEEEeCCCCCceeEEeccCCCceEEEEec
Q 002591 684 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 717 (903)
Q Consensus 684 s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fs 717 (903)
..+|.|++|... +..+..-.-|.++|..|.+.
T Consensus 86 ~ssG~vrfyte~--G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTEN--GVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEecc--chHHHHHhcCccceEEEEec
Confidence 999999999875 44444444577777777764
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.11 Score=59.70 Aligned_cols=119 Identities=9% Similarity=0.058 Sum_probs=81.1
Q ss_pred CCCeEEEEEcCC----CCEEEEEeCCCcEEEEECC-----CCceeEEeccC---CCC--eEEEEECCCCCEEEEEeCCCc
Q 002591 623 TSKVICCHFSSD----GKLLATGGHDKKAVLWHTD-----TLKSKTNLEEH---SSL--ITDVRFSPSMPRLATSSFDKT 688 (903)
Q Consensus 623 ~~~V~~l~fspd----g~~Latgs~Dg~V~vWd~~-----t~~~~~~l~~h---~~~--V~~l~fspdg~~Lasgs~Dg~ 688 (903)
-..|..++|.|- ...|++.-..+.|.||-+. +.+.+..-..+ .-+ -..+.|+|....|++-.....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 346899999984 3345555678899999865 22222221111 111 235779999998877776665
Q ss_pred EEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCC
Q 002591 689 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 741 (903)
Q Consensus 689 I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~ 741 (903)
-.++++..+...++.-....+.|.|.||.+||.+++++.+..=.-+|||-...
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 56777776555555444567889999999999999988777777889986543
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.24 Score=52.46 Aligned_cols=192 Identities=13% Similarity=0.112 Sum_probs=119.6
Q ss_pred eeEEecc-CCCCeEEEEECCCCCEEEEEeCCC--cEEEEeCCCCCceeEEec-cCCCceEEEEecCCCCeEEEEEeCCCc
Q 002591 657 SKTNLEE-HSSLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGE 732 (903)
Q Consensus 657 ~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg--~I~IWDl~~~~~~~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~ 732 (903)
.+.++.. .....-.+.|..++.++-+.+.-| .|+.+|+.+ ++...... ...-.--.|+.. ++.++.-.-.++.
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t-g~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLET-GKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTT-SSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCC-CcEEEEEECCccccceeEEEE--CCEEEEEEecCCe
Confidence 3444432 233455777877787777777755 699999998 44443332 222333345555 3456666778999
Q ss_pred EEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCC--C---CCeEEEEEcCCCCEEEE
Q 002591 733 IRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH--T---KPIDSVCWDPSGELLAS 807 (903)
Q Consensus 733 I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h--~---~~V~sl~~spdg~~las 807 (903)
..+||..+.+.+..+.-....--...++..++.+.....|+++|.++.+.+..+... . ..++.+.|. +|.+.|-
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN 190 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN 190 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEE
T ss_pred EEEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEE
Confidence 999999999988887654433333477888999888999999999998777665532 2 235566776 4665555
Q ss_pred EeCC-eEEEEECCCCCCcceEEEee---------------cCCCceEEEEEeCCCCEEEEEECC
Q 002591 808 VSED-SVRVWTVGSGSEGECVHELS---------------CNGNKFHSCVFHPTYPSLLVIGCY 855 (903)
Q Consensus 808 gs~d-~I~iwdl~s~~~~~~i~~~~---------------~~~~~i~si~~sp~g~~l~t~s~d 855 (903)
.-.. .|...|..++. ++..+. ....-.+.|++.|....|++.+..
T Consensus 191 VW~td~I~~Idp~tG~---V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 191 VWQTDRIVRIDPETGK---VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp ETTSSEEEEEETTT-B---EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred eCCCCeEEEEeCCCCe---EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 5444 88888888873 332221 113457899999988887777654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.018 Score=66.85 Aligned_cols=135 Identities=8% Similarity=0.093 Sum_probs=93.5
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002591 664 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 743 (903)
Q Consensus 664 h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~ 743 (903)
|...|.--++...+++|+.|+.-|.|++|+-..+........+-.+.+..++.+++ .+++|.|+..|.|.++-+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCC
Confidence 44455556667788999999999999999987633333333334455555666665 66888899899999998776321
Q ss_pred -----e----EEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCC----eEEEEecCCCCCeEEEEEc
Q 002591 744 -----T----RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ----ACRLSLQGHTKPIDSVCWD 799 (903)
Q Consensus 744 -----~----~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~----~~~~~l~~h~~~V~sl~~s 799 (903)
+ ...+..+++++|++++..+++|...|.|.+..+.+. .....+....+.|.-+.+.
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 1 112345788999999999999999999999887772 1122233345667666655
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.41 Score=50.68 Aligned_cols=192 Identities=14% Similarity=0.114 Sum_probs=115.0
Q ss_pred ceeeeeEeecCCC-CeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEeccCC-CCeEEEEECCCCCEEEEEeCCC
Q 002591 612 SFKEANSVRASTS-KVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDK 687 (903)
Q Consensus 612 ~~~~~~~l~~H~~-~V~~l~fspdg~~Latgs~Dg--~V~vWd~~t~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg 687 (903)
.++.+.++..... -.-.+.|..+|.++-+.+.-| .|+.+|+++++......-.. .--..|+... ++.+...=.++
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~ 110 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCC
Confidence 3445555543233 334677878888888877666 69999999998776654221 1222233322 22333334488
Q ss_pred cEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec--------CceeEEEecC
Q 002591 688 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPH 759 (903)
Q Consensus 688 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~--------~~~~v~~sp~ 759 (903)
...+||.++ -+.+.++. ....=+.|+. ++..++ ..+....|+++|..+.+..+.+.. ..+.+.|.
T Consensus 111 ~~f~yd~~t-l~~~~~~~-y~~EGWGLt~--dg~~Li-~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-- 183 (264)
T PF05096_consen 111 TGFVYDPNT-LKKIGTFP-YPGEGWGLTS--DGKRLI-MSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-- 183 (264)
T ss_dssp EEEEEETTT-TEEEEEEE--SSS--EEEE--CSSCEE-EE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--
T ss_pred eEEEEcccc-ceEEEEEe-cCCcceEEEc--CCCEEE-EECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--
Confidence 899999987 56666665 3456677774 456666 445577899999988876665532 23334454
Q ss_pred CCEEEEEEc-CCeEEEEECCCCeEEEEecC------------C---CCCeEEEEEcCCCCEEEEEeCC
Q 002591 760 LGRYLAAAA-ENVVSILDAETQACRLSLQG------------H---TKPIDSVCWDPSGELLASVSED 811 (903)
Q Consensus 760 ~~~ll~~s~-dg~I~i~D~~t~~~~~~l~~------------h---~~~V~sl~~spdg~~lasgs~d 811 (903)
++.+++-.. ...|...|..+|+++..+.. + ....+.|+|+|....|...+..
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 455665544 67899999999998876521 1 3468899999987755555544
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.093 Score=55.04 Aligned_cols=229 Identities=12% Similarity=0.104 Sum_probs=127.8
Q ss_pred EEEEEcCCCC-EEEEEeCCCc-EEEEECCCCceeEEeccCCC--CeEEEEECCCCCEEEEEeC-----CCcEEEEeCCCC
Q 002591 627 ICCHFSSDGK-LLATGGHDKK-AVLWHTDTLKSKTNLEEHSS--LITDVRFSPSMPRLATSSF-----DKTVRVWDADNP 697 (903)
Q Consensus 627 ~~l~fspdg~-~Latgs~Dg~-V~vWd~~t~~~~~~l~~h~~--~V~~l~fspdg~~Lasgs~-----Dg~I~IWDl~~~ 697 (903)
..|+|+|... -++.+-.-|+ ..++|........++...++ .--.=.|++||.+|+..-. -|.|-|||.+..
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 3567777543 4555555555 56788877666555432111 1222369999999988744 377999999976
Q ss_pred CceeEEeccCCCceEEEEecCCCCeEEEEEeC-----------------CCcEEEEEcCCCeeeEEeec-------Ccee
Q 002591 698 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-----------------DGEIRYWSINNGSCTRVFKG-------GTAQ 753 (903)
Q Consensus 698 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~-----------------Dg~I~iwDi~t~~~~~~~~~-------~~~~ 753 (903)
-..+-.+..|.-.-..+.|.+||+.+++..+. .-.+.+.|..++..+....- .+..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 66677888888888889999998876654330 01233334344444333221 2334
Q ss_pred EEEecCCCEEEEEEcCCe-----EEEEECCCCeEEEEecC-------CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECC
Q 002591 754 MRFQPHLGRYLAAAAENV-----VSILDAETQACRLSLQG-------HTKPIDSVCWDPSGELLASVSED--SVRVWTVG 819 (903)
Q Consensus 754 v~~sp~~~~ll~~s~dg~-----I~i~D~~t~~~~~~l~~-------h~~~V~sl~~spdg~~lasgs~d--~I~iwdl~ 819 (903)
+...+++..++.+-..|- -.+=-...++.+.-+.. ....|-+|+.+.+..+++..+.. ...+||..
T Consensus 231 ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 231 LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence 445555444333322220 00001112222222211 12346778888766666655544 88999999
Q ss_pred CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEE
Q 002591 820 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 862 (903)
Q Consensus 820 s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwd 862 (903)
++. .+.... -..++-.-+...-|++.+.+|.|.++.
T Consensus 311 tG~---vv~~a~----l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 311 TGA---VVSEAA----LPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CCc---EEeccc----ccccccceeccCceEEecCCceEEecc
Confidence 873 222211 111122334445588888889888884
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.064 Score=64.20 Aligned_cols=206 Identities=12% Similarity=0.080 Sum_probs=112.6
Q ss_pred CCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEe-----CCC--cEEEEEcCCCeeeEEee-cCceeEEEe
Q 002591 686 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-----GDG--EIRYWSINNGSCTRVFK-GGTAQMRFQ 757 (903)
Q Consensus 686 Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs-----~Dg--~I~iwDi~t~~~~~~~~-~~~~~v~~s 757 (903)
+|.+.-.+-.. ...+.-..+....+.+.+++|++..++++.. .|. .|.+++.... ...... .....-.|+
T Consensus 328 ~G~l~~~~~~~-~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~~~lt~g~~~t~PsWs 405 (591)
T PRK13616 328 DGSLVSVDGQG-VTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-AVQVLEGHSLTRPSWS 405 (591)
T ss_pred CCeEEEecCCC-eeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-ceeeecCCCCCCceEC
Confidence 66665443221 1122222233346788999999998877662 233 4555564322 222222 235667899
Q ss_pred cCCCEEEEEEcC------------CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEE---EECCCCC
Q 002591 758 PHLGRYLAAAAE------------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV---WTVGSGS 822 (903)
Q Consensus 758 p~~~~ll~~s~d------------g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~i---wdl~s~~ 822 (903)
|+++.+++.... +.+.+.+++.+.... .....|..+.|+|||..|+....+.|++ -....+.
T Consensus 406 pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 406 LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ 482 (591)
T ss_pred CCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc
Confidence 998877766533 233333444333322 2346799999999999888776666666 3322332
Q ss_pred Ccce--EEEeec-CCCceEEEEEeCCCCEEEEEECCCe--EEEEECCCCcEEEEcc--CCCCEEEEEEecCCCEEEEEec
Q 002591 823 EGEC--VHELSC-NGNKFHSCVFHPTYPSLLVIGCYQS--LELWNMSENKTMTLTA--HEGLIAALAVSTETGYVASASH 895 (903)
Q Consensus 823 ~~~~--i~~~~~-~~~~i~si~~sp~g~~l~t~s~dg~--I~vwdl~~~~~~~~~~--h~~~V~sl~~spdg~~LaSgs~ 895 (903)
... ...+.. -...+..+.|..++. |+++..++. |+..++.......+.. ....|.+|+-++. .|+....
T Consensus 483 -~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~ 558 (591)
T PRK13616 483 -YALTNPREVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDA 558 (591)
T ss_pred -eeecccEEeecccCCccccceEecCCE-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcC
Confidence 111 111222 233357889999988 455555543 4444555333222222 3566777777653 3555556
Q ss_pred CCcEE
Q 002591 896 DKFVK 900 (903)
Q Consensus 896 DG~I~ 900 (903)
+|.+.
T Consensus 559 ~g~~~ 563 (591)
T PRK13616 559 RAVLQ 563 (591)
T ss_pred CceEE
Confidence 66544
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.37 Score=53.80 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=41.6
Q ss_pred CceEEEEEeC-------CCCEEEEEECCCeEEEEECCCCcEE----EEc-cCCCCEEEEEEecCCCEEEEEecCCcEE
Q 002591 835 NKFHSCVFHP-------TYPSLLVIGCYQSLELWNMSENKTM----TLT-AHEGLIAALAVSTETGYVASASHDKFVK 900 (903)
Q Consensus 835 ~~i~si~~sp-------~g~~l~t~s~dg~I~vwdl~~~~~~----~~~-~h~~~V~sl~~spdg~~LaSgs~DG~I~ 900 (903)
..+..+.|.. .+.+|++.-..+.|...++.++..+ .+. .....+..+++.|||.++++.+.+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4455666653 3344555555568888888755433 222 3445899999999999998888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0022 Score=44.81 Aligned_cols=39 Identities=36% Similarity=0.537 Sum_probs=34.6
Q ss_pred CceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 002591 655 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 693 (903)
Q Consensus 655 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 693 (903)
++.+..+..|...|.++.|.+++.++++++.|+.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.054 Score=64.82 Aligned_cols=214 Identities=9% Similarity=0.072 Sum_probs=105.9
Q ss_pred cEEEEECCCCcee--EEeccCCCCeEEEEECCCCCEEEEEeCC------CcEEEEeCCCCCceeEEecc---CCCceEEE
Q 002591 646 KAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNPGYSLRTFMG---HSASVMSL 714 (903)
Q Consensus 646 ~V~vWd~~t~~~~--~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~I~IWDl~~~~~~~~~~~~---h~~~V~sl 714 (903)
.+..||..+.+-. ..+...... .+++. -++..++.|+.+ ..+..||..+... ..+.. ..... ++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W--~~~~~m~~~R~~~-~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH--VELPPMIKNRCRF-SL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE--eeCCCCcchhhce-eE
Confidence 5677887654322 222211111 12222 256677777753 3477888876322 11111 11111 22
Q ss_pred EecCCCCeEEEEEeCCC-----cEEEEEcCCCeeeEE--eecCceeE-EEecCCCEEEEEEcC-----------------
Q 002591 715 DFHPNKDDLICSCDGDG-----EIRYWSINNGSCTRV--FKGGTAQM-RFQPHLGRYLAAAAE----------------- 769 (903)
Q Consensus 715 ~fsp~~~~ll~sgs~Dg-----~I~iwDi~t~~~~~~--~~~~~~~v-~~sp~~~~ll~~s~d----------------- 769 (903)
+.. ++.+++.|+.++ .|..||..+.+.... +....... ....++..+++|+.+
T Consensus 348 ~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 348 AVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred EEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccc
Confidence 222 345767777654 488899887754332 11111111 122344555555543
Q ss_pred ------CeEEEEECCCCeEEEEecCCCCCeE-EEEEcCCCCEEEEEeCC-------eEEEEECCCCCCcceEEEeecCCC
Q 002591 770 ------NVVSILDAETQACRLSLQGHTKPID-SVCWDPSGELLASVSED-------SVRVWTVGSGSEGECVHELSCNGN 835 (903)
Q Consensus 770 ------g~I~i~D~~t~~~~~~l~~h~~~V~-sl~~spdg~~lasgs~d-------~I~iwdl~s~~~~~~i~~~~~~~~ 835 (903)
..|..||.++.+-...-.-...... +++ .-++++.+.|+.+ .+..||..+......+..+.....
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 2477888877643321111111111 222 2246655656532 367888876212333333333222
Q ss_pred ceEEEEEeCCCCEEEEEECCC--eEEEEECCCCcEE
Q 002591 836 KFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTM 869 (903)
Q Consensus 836 ~i~si~~sp~g~~l~t~s~dg--~I~vwdl~~~~~~ 869 (903)
....+++ +++..++|+.++ .+..||..+.+..
T Consensus 505 ~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 505 ALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred cceeEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 2222233 677788888887 7889998888765
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.05 Score=49.50 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=66.6
Q ss_pred eEEEEEcC---CCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCc
Q 002591 793 IDSVCWDP---SGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 867 (903)
Q Consensus 793 V~sl~~sp---dg~-~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~ 867 (903)
|+++++.. +|. .|++|++| .||+|+-. ..+.++.. ...+..++-... ..|+.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee
Confidence 55666554 443 88899999 99999854 45566554 456666666555 569999999999999864333
Q ss_pred EEEEccCCCCEEEEEEec-CC---CEEEEEecCCcEEE
Q 002591 868 TMTLTAHEGLIAALAVST-ET---GYVASASHDKFVKL 901 (903)
Q Consensus 868 ~~~~~~h~~~V~sl~~sp-dg---~~LaSgs~DG~I~I 901 (903)
... .....+.++++.. ++ .-|++|-.+|.|-+
T Consensus 75 WRi--KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRI--KSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eee--ccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 222 2333366665543 32 26889989998854
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.081 Score=58.01 Aligned_cols=185 Identities=17% Similarity=0.185 Sum_probs=113.4
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC----
Q 002591 714 LDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG---- 788 (903)
Q Consensus 714 l~fsp~~~~ll~sgs~Dg~I~iwDi~t~~-~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~---- 788 (903)
..|.++...++.+--..+.|.-||..+++ ...........+.....++.|+++.. .+.+++.+++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~ 107 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDG 107 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCC
Confidence 45777777777777778899999988664 33344445555555555566665543 345555555544222211
Q ss_pred -CCCCeEEEEEcCCCCEEEEEeC---------C-eEEEEECC-CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECC-
Q 002591 789 -HTKPIDSVCWDPSGELLASVSE---------D-SVRVWTVG-SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY- 855 (903)
Q Consensus 789 -h~~~V~sl~~spdg~~lasgs~---------d-~I~iwdl~-s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~d- 855 (903)
.....+.+...|+|.+.++... . .-.||.+. .+ ..+..+..+-..-+.++|+||++.++++...
T Consensus 108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g---~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG---GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC---CEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1234567889999997776544 1 22455554 22 3334444334556788999999988888775
Q ss_pred CeEEEEECCC--C----c--EEEEccCCCCEEEEEEecCCCEEEEEecCC-cEEEcC
Q 002591 856 QSLELWNMSE--N----K--TMTLTAHEGLIAALAVSTETGYVASASHDK-FVKLWK 903 (903)
Q Consensus 856 g~I~vwdl~~--~----~--~~~~~~h~~~V~sl~~spdg~~LaSgs~DG-~I~IWd 903 (903)
+.|+-|++.. + + .+....+.+..-.++...+|.+.+++..+| .|.+|+
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 6888887762 1 1 112223456677788888888776555554 677664
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.31 Score=51.71 Aligned_cols=191 Identities=12% Similarity=0.125 Sum_probs=121.2
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC-CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 002591 619 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 697 (903)
Q Consensus 619 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~ 697 (903)
+.+-+..|.++.|+|+.+.|++......-.||=...|..++++.-. -..-..|.|..++.+.++--.+..+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 4455566999999999998888888888888877789999887621 233456778778877777777888988877753
Q ss_pred CceeE---------EeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe-ee------------EEeecCceeEE
Q 002591 698 GYSLR---------TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CT------------RVFKGGTAQMR 755 (903)
Q Consensus 698 ~~~~~---------~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~-~~------------~~~~~~~~~v~ 755 (903)
...+. .........-.++|.|....++ .+-+..-+.||.+.... .+ ..+-..+..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 32211 1112245677899999988777 55566677777765432 11 11223456677
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCC---------CCeEEEEEcCCCCEEEEEeCC
Q 002591 756 FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSED 811 (903)
Q Consensus 756 ~sp~~~~ll~~s~-dg~I~i~D~~t~~~~~~l~~h~---------~~V~sl~~spdg~~lasgs~d 811 (903)
|.+..+.+++-+. ++.+.-.|.... .+..+.-+. .....|+.+++|.+.+++-.+
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence 8877766666555 455555665433 233222111 124567777777754444333
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.058 Score=64.50 Aligned_cols=215 Identities=13% Similarity=0.086 Sum_probs=113.4
Q ss_pred CCEEEEEeCC------CcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCC------CcEEEEEcCCCeee
Q 002591 677 MPRLATSSFD------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCT 744 (903)
Q Consensus 677 g~~Lasgs~D------g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D------g~I~iwDi~t~~~~ 744 (903)
+.+++.|+.+ ..|..||..+.......-......-.++++.. +.++++|+.| ..+..||.++.+..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCcee
Confidence 4455566555 35778888764222111111233344455553 4577788888 35778888887744
Q ss_pred EEee--cCceeEE-EecCCCEEEEEEcCC-----eEEEEECCCCeEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC---
Q 002591 745 RVFK--GGTAQMR-FQPHLGRYLAAAAEN-----VVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED--- 811 (903)
Q Consensus 745 ~~~~--~~~~~v~-~sp~~~~ll~~s~dg-----~I~i~D~~t~~~~~~--l~~h~~~V~sl~~spdg~~lasgs~d--- 811 (903)
..-. ....... ..-++..+++|+.|| .|..||.++.+.... +......+..+. -+|.+.++|+.+
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSS 440 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCc
Confidence 3221 1112222 233455666777775 688888887643322 211111122222 247766666633
Q ss_pred ----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCC-----eEEEEECCCCcEEEEccCCCCEEEEE
Q 002591 812 ----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTLTAHEGLIAALA 882 (903)
Q Consensus 812 ----~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg-----~I~vwdl~~~~~~~~~~h~~~V~sl~ 882 (903)
++..||..+..- ..+..+........ +..-++..+++||.|+ +|..||..+.+...+..-......+.
T Consensus 441 ~~l~sve~YDP~t~~W-~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g 517 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTW-TLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG 517 (571)
T ss_pred cccceEEEEcCCCCce-eecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc
Confidence 578888876521 12222211111122 2223566677777665 58999999988775543222222221
Q ss_pred E-ecCCCEEEEEecCCc
Q 002591 883 V-STETGYVASASHDKF 898 (903)
Q Consensus 883 ~-spdg~~LaSgs~DG~ 898 (903)
+ .-+++..++|+.||.
T Consensus 518 ~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 518 VVVLGGKLYAVGGFDGN 534 (571)
T ss_pred EEEECCEEEEEecccCc
Confidence 1 235677888888875
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.036 Score=62.44 Aligned_cols=137 Identities=10% Similarity=0.085 Sum_probs=95.9
Q ss_pred EEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCe-------EEEEEeCCCcEEEEEcCCCee--eEE----
Q 002591 680 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD-------LICSCDGDGEIRYWSINNGSC--TRV---- 746 (903)
Q Consensus 680 Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~-------ll~sgs~Dg~I~iwDi~t~~~--~~~---- 746 (903)
|.++..-..|+-.|++. ++++..+.-+.. |.-+.+.|+... -| .|-.|..|+-||.+-... +..
T Consensus 349 l~~~~~~~~l~klDIE~-GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIER-GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eeCCCCcCcceeeeccc-ceeeeEeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCcceeeeeecc
Confidence 34445556688889987 888888887766 777778776432 23 466789999999984322 111
Q ss_pred -eecCce-eEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 002591 747 -FKGGTA-QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 819 (903)
Q Consensus 747 -~~~~~~-~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~ 819 (903)
|..... .+...-..+++++|+.+|.|++||--.......+.+-..+|..|..+.+|++|++.+...+.+.++.
T Consensus 426 qy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 112221 1222334589999999999999998444445556778899999999999999998888877776654
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.18 Score=51.50 Aligned_cols=133 Identities=14% Similarity=0.169 Sum_probs=89.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEE
Q 002591 665 SSLITDVRFSPSMPRLATSSFD---------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 735 (903)
Q Consensus 665 ~~~V~~l~fspdg~~Lasgs~D---------g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~i 735 (903)
....++-..+|+|++++-.-.| |.++.|-... .+..+...-.--..|+|..+.+.+.++-+.+-+|.-
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h---~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH---QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC---CceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 4456677788999984433222 4455554432 122222222333458898887777778888889988
Q ss_pred EE--cCCCee-----eEEeec-------CceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcC
Q 002591 736 WS--INNGSC-----TRVFKG-------GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 800 (903)
Q Consensus 736 wD--i~t~~~-----~~~~~~-------~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp 800 (903)
|| ..+|.. +..++. ....+++...++.++++-..++|..+|..+++.+.+++-....|+|+||--
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 88 555532 222211 122356667778888888899999999999999999998899999999974
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.3 Score=51.82 Aligned_cols=188 Identities=15% Similarity=0.208 Sum_probs=109.0
Q ss_pred eccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----CceeEEEecCCCEEEEEEcCCeEEEEECCC
Q 002591 704 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAAENVVSILDAET 779 (903)
Q Consensus 704 ~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~----~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t 779 (903)
+.+....|.++.|+|+.+.++++.. ...-.+|=...|..++++.- ....+.+.-.+.+.++--.+..++++.+..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n-~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTN-KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcceEEEecC-CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 3455566999999999888875554 55555666667888887653 345577777666666555677888776554
Q ss_pred CeEEE-------Eec--CC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecC-------CCceEEEE
Q 002591 780 QACRL-------SLQ--GH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCV 841 (903)
Q Consensus 780 ~~~~~-------~l~--~h-~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~-------~~~i~si~ 841 (903)
...+. .+. .+ ......++|+|....|+.+-+. -+.||.+........++....+ -..+..+.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 42211 111 12 5678899999988866666655 4555544432211111111111 12366778
Q ss_pred EeCCCCEEEE-EECCCeEEEEECCCCcEE--EEccCC-------CCEEEEEEecCCCEEEE
Q 002591 842 FHPTYPSLLV-IGCYQSLELWNMSENKTM--TLTAHE-------GLIAALAVSTETGYVAS 892 (903)
Q Consensus 842 ~sp~g~~l~t-~s~dg~I~vwdl~~~~~~--~~~~h~-------~~V~sl~~spdg~~LaS 892 (903)
|++....+++ +..++.|.-.|....-.- .+.+.. .....++...+|.+.++
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 8875555554 445567777777655322 222111 12346777777664443
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.093 Score=62.78 Aligned_cols=229 Identities=14% Similarity=0.114 Sum_probs=118.0
Q ss_pred CCCCEEEEEeCC------CcEEEEECCCCceeEEecc-CCCCeEEEEECCCCCEEEEEeCC------CcEEEEeCCCCCc
Q 002591 633 SDGKLLATGGHD------KKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNPGY 699 (903)
Q Consensus 633 pdg~~Latgs~D------g~V~vWd~~t~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~D------g~I~IWDl~~~~~ 699 (903)
..+.+++.|+.+ ..|..||..+..-.....- +...-.++++. ++.+.++|+.| .++..||..+...
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 345566777766 3678888776532222211 22223334443 44678888888 3577888876432
Q ss_pred eeEEeccCCCceEEEEecCCCCeEEEEEeCCCc-----EEEEEcCCCeeeEEe--ecCceeEEEe-cCCCEEEEEEcC--
Q 002591 700 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE-----IRYWSINNGSCTRVF--KGGTAQMRFQ-PHLGRYLAAAAE-- 769 (903)
Q Consensus 700 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~-----I~iwDi~t~~~~~~~--~~~~~~v~~s-p~~~~ll~~s~d-- 769 (903)
..+..-...-..+....-++.+.++|+.||. |..||.++.+....- .......... -++..+++|+.+
T Consensus 362 --~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 362 --TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred --eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 1111111111111111224567788888864 777888776543322 1222223333 344455555544
Q ss_pred ----CeEEEEECCCCeEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeecCCCce
Q 002591 770 ----NVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKF 837 (903)
Q Consensus 770 ----g~I~i~D~~t~~~~~~--l~~h~~~V~sl~~spdg~~lasgs~d------~I~iwdl~s~~~~~~i~~~~~~~~~i 837 (903)
..|..||..+.+.... +..-..... ++.. ++.+.+.|+.+ +|..||..+..- ..+.........+
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W-~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQW-TMVAPMTSPRSAV 516 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCce-eEcccCccccccc
Confidence 3678899888754332 222122222 3322 36666666644 478888876421 2222222212222
Q ss_pred EEEEEeCCCCEEEEEECCC-----eEEEEECCCCcEE
Q 002591 838 HSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTM 869 (903)
Q Consensus 838 ~si~~sp~g~~l~t~s~dg-----~I~vwdl~~~~~~ 869 (903)
.. ..-++...++|+.|+ +|..||..+++..
T Consensus 517 g~--~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 517 GV--VVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred cE--EEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 11 222566677777775 7888888777655
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.7 Score=49.44 Aligned_cols=184 Identities=14% Similarity=0.122 Sum_probs=100.2
Q ss_pred ceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-e-cCceeEEEecCCCEEEEEEcCCeEEEE-ECCCCeEE-EE
Q 002591 710 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-K-GGTAQMRFQPHLGRYLAAAAENVVSIL-DAETQACR-LS 785 (903)
Q Consensus 710 ~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~-~-~~~~~v~~sp~~~~ll~~s~dg~I~i~-D~~t~~~~-~~ 785 (903)
.+.+.++++++..+.+....++.-.+|-...+...... . .....-.|++++...++...+...+++ +..++... ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 68889999999877766633444444444433322222 2 355667789996555555555665665 33333222 11
Q ss_pred ecC--CCCCeEEEEEcCCCCEEEEEe----CCeEEEEECCCCCCc------ceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 002591 786 LQG--HTKPIDSVCWDPSGELLASVS----EDSVRVWTVGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIG 853 (903)
Q Consensus 786 l~~--h~~~V~sl~~spdg~~lasgs----~d~I~iwdl~s~~~~------~~i~~~~~~~~~i~si~~sp~g~~l~t~s 853 (903)
+.. ....|..+.++|||..++... ...|.|--+...... ..+.........+..+.|.+++..++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 221 122899999999999776655 236766665433222 11122223356788999999998777665
Q ss_pred CCCe-EEE-EECCCCcEEEEccCCCCEEEEEEecCCCEEEEE
Q 002591 854 CYQS-LEL-WNMSENKTMTLTAHEGLIAALAVSTETGYVASA 893 (903)
Q Consensus 854 ~dg~-I~v-wdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSg 893 (903)
..+. +.. +....+....+..-...+..++...+...++..
T Consensus 185 ~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t 226 (253)
T PF10647_consen 185 SAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVT 226 (253)
T ss_pred CCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEE
Confidence 5542 333 444444333332223333333333333333333
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.49 Score=58.34 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=68.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeccCCCC--------eEEEEECC----------------CCCEEEEEeCCCcEE
Q 002591 635 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL--------ITDVRFSP----------------SMPRLATSSFDKTVR 690 (903)
Q Consensus 635 g~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~--------V~~l~fsp----------------dg~~Lasgs~Dg~I~ 690 (903)
+..|++++.++.|.-.|.++++.+-.+...... +..+.+.. ++..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 446677777788888888888887776543211 12233321 345788888999999
Q ss_pred EEeCCCCCceeEEeccCCCceE-------------EEEecC--CCCeEEEEEeC----------CCcEEEEEcCCCeeeE
Q 002591 691 VWDADNPGYSLRTFMGHSASVM-------------SLDFHP--NKDDLICSCDG----------DGEIRYWSINNGSCTR 745 (903)
Q Consensus 691 IWDl~~~~~~~~~~~~h~~~V~-------------sl~fsp--~~~~ll~sgs~----------Dg~I~iwDi~t~~~~~ 745 (903)
-.|.++ ++.+..|.. .+.|. .+.-.| .++.++ +++. +|.|+-+|+++|+.+-
T Consensus 274 ALDA~T-Gk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADT-GKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCC-CCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 999988 555554431 11110 011111 123333 4432 6889999999999888
Q ss_pred Eeec
Q 002591 746 VFKG 749 (903)
Q Consensus 746 ~~~~ 749 (903)
.+..
T Consensus 351 ~~~~ 354 (764)
T TIGR03074 351 AWDP 354 (764)
T ss_pred EEec
Confidence 7753
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=1.5 Score=46.49 Aligned_cols=238 Identities=12% Similarity=0.031 Sum_probs=127.5
Q ss_pred cCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 002591 621 AST-SKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 697 (903)
Q Consensus 621 ~H~-~~V~~l~fspdg~~Latgs~Dg~V~vWd~~--t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~ 697 (903)
+|- ..|..+....+-.++..|-.--..-+|+.. +...+..+-.-.+-+.+++++.+ +.+.+..+.-++|.|+.++
T Consensus 39 ghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P 116 (370)
T COG5276 39 GHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSEE--YVYVADWSSGLRIVDISTP 116 (370)
T ss_pred eeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEeccc--EEEEEcCCCceEEEeccCC
Confidence 444 455555555443333333211122344433 12222223334556778888754 7777778888999999987
Q ss_pred CceeEEeccCC-CceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe---eeEEeecCcee-EEEecCCCEEEEEEcCCeE
Q 002591 698 GYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKGGTAQ-MRFQPHLGRYLAAAAENVV 772 (903)
Q Consensus 698 ~~~~~~~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~---~~~~~~~~~~~-v~~sp~~~~ll~~s~dg~I 772 (903)
..+...-.-.. +.-.++..+ |+ +++.+..|.-+.+.|+.+.. ....+...... -...-.|++-.++..|+.+
T Consensus 117 ~sP~~~~~lnt~gyaygv~vs--Gn-~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL 193 (370)
T COG5276 117 DSPTLIGFLNTDGYAYGVYVS--GN-YAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGL 193 (370)
T ss_pred CCcceeccccCCceEEEEEec--CC-EEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCCe
Confidence 65543222122 444555554 44 45566656667788987654 22333322211 2233346777788899999
Q ss_pred EEEECCCCeE-EEEe-cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 002591 773 SILDAETQAC-RLSL-QGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 850 (903)
Q Consensus 773 ~i~D~~t~~~-~~~l-~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~ 850 (903)
.|.|+..... +..- ......+.++..+++..+++...+ .+.+-|....+....+..... .+.+..-.+.-.+++..
T Consensus 194 ~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e-gvlivd~s~~ssp~~~gsyet-~~p~~~s~v~Vs~~~~Y 271 (370)
T COG5276 194 TIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE-GVLIVDVSGPSSPTVFGSYET-SNPVSISTVPVSGEYAY 271 (370)
T ss_pred EEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc-ceEEEecCCCCCceEeecccc-CCcccccceecccceee
Confidence 9999887532 2111 112336788888876666665544 466677766543333333222 22221112333455566
Q ss_pred EEECCCeEEEEECCC
Q 002591 851 VIGCYQSLELWNMSE 865 (903)
Q Consensus 851 t~s~dg~I~vwdl~~ 865 (903)
+...+..+-+.|+++
T Consensus 272 vadga~gl~~idisn 286 (370)
T COG5276 272 VADGAKGLPIIDISN 286 (370)
T ss_pred eeccccCceeEeccC
Confidence 666666666666554
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.047 Score=66.30 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=72.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceE
Q 002591 634 DGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM 712 (903)
Q Consensus 634 dg~~Latgs~Dg~V~vWd~~t~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~ 712 (903)
.+..++.|+..|.|-..|+... .....=..-.++|++++|+.+|+.++.|-.+|.|.+||+.+ ++.++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence 3457888988899998887642 22222234567899999999999999999999999999998 677888877766655
Q ss_pred EEEe---cCCCCeEEEEEeCCCcEEEEEc
Q 002591 713 SLDF---HPNKDDLICSCDGDGEIRYWSI 738 (903)
Q Consensus 713 sl~f---sp~~~~ll~sgs~Dg~I~iwDi 738 (903)
.+-+ ..++. .+++++..|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 5443 33333 4557766665 5554
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.44 E-value=1.8 Score=52.82 Aligned_cols=214 Identities=12% Similarity=0.089 Sum_probs=125.1
Q ss_pred EEEEEeCCCcEEEEeCCCCC-ceeEEeccCCCceEEEEecCCCCeEEEEEeCC--------------CcEEEEEcCCCee
Q 002591 679 RLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--------------GEIRYWSINNGSC 743 (903)
Q Consensus 679 ~Lasgs~Dg~I~IWDl~~~~-~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D--------------g~I~iwDi~t~~~ 743 (903)
.|+++. .+.+++.-++.-. ..++++. -......+++.+..- ++.+.+.- ..++++|-++.+.
T Consensus 686 ~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl-~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 686 SLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSL-TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred eEEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccce-EEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 444444 4557777666422 2234433 334456677776433 33333221 2367777777766
Q ss_pred eEEeec-------CceeEEEecC-CCEEEEEEc----------CCeEEEEECCCCeEEEEecC--CCCCeEEEEEcCCCC
Q 002591 744 TRVFKG-------GTAQMRFQPH-LGRYLAAAA----------ENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGE 803 (903)
Q Consensus 744 ~~~~~~-------~~~~v~~sp~-~~~ll~~s~----------dg~I~i~D~~t~~~~~~l~~--h~~~V~sl~~spdg~ 803 (903)
+..++- .+..+.|..+ +.++++|.. .|.|.+|.......+..... -.+.+.+++.- +|+
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngk 841 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGK 841 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCe
Confidence 654432 1223346666 456666654 47888887777433332222 23344444332 466
Q ss_pred EEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEE--ECCCCcEE--EEccCCCCEE
Q 002591 804 LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW--NMSENKTM--TLTAHEGLIA 879 (903)
Q Consensus 804 ~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vw--dl~~~~~~--~~~~h~~~V~ 879 (903)
+||.-+. .|++|++.+. +.++.-..+...+..+...-.++.|++|..-++|.+. +-.+|... ...-+..+++
T Consensus 842 llA~In~-~vrLye~t~~---~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmt 917 (1096)
T KOG1897|consen 842 LLAGINQ-SVRLYEWTTE---RELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMT 917 (1096)
T ss_pred EEEecCc-EEEEEEcccc---ceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCcccee
Confidence 6654332 7999998765 4455555567788889999999999999988866654 44454455 3345777888
Q ss_pred EEEEecCCCEEEEEecCCcEEE
Q 002591 880 ALAVSTETGYVASASHDKFVKL 901 (903)
Q Consensus 880 sl~~spdg~~LaSgs~DG~I~I 901 (903)
++.+-.+..| +.+..+|.+++
T Consensus 918 aveil~~d~y-lgae~~gNlf~ 938 (1096)
T KOG1897|consen 918 AVEILDDDTY-LGAENSGNLFT 938 (1096)
T ss_pred eEEEecCceE-EeecccccEEE
Confidence 8888655544 44556666654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.22 Score=59.64 Aligned_cols=176 Identities=6% Similarity=-0.000 Sum_probs=87.6
Q ss_pred CCeEEEEEeCC------CcEEEEEcCCCeeeEEe--ecCc-eeEEEecCCCEEEEEEcCC-----eEEEEECCCCeEEE-
Q 002591 720 KDDLICSCDGD------GEIRYWSINNGSCTRVF--KGGT-AQMRFQPHLGRYLAAAAEN-----VVSILDAETQACRL- 784 (903)
Q Consensus 720 ~~~ll~sgs~D------g~I~iwDi~t~~~~~~~--~~~~-~~v~~sp~~~~ll~~s~dg-----~I~i~D~~t~~~~~- 784 (903)
++.+++.|+.+ ..+..||+.+......- .... .......++..+++|+.++ .+..||..+.+-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 34567677753 34778898877543221 1111 1122333455566666543 58889988764332
Q ss_pred -EecCCCCCeEEEEEcCCCCEEEEEeCC------------------------eEEEEECCCCCCcceEEEeecCCCceEE
Q 002591 785 -SLQGHTKPIDSVCWDPSGELLASVSED------------------------SVRVWTVGSGSEGECVHELSCNGNKFHS 839 (903)
Q Consensus 785 -~l~~h~~~V~sl~~spdg~~lasgs~d------------------------~I~iwdl~s~~~~~~i~~~~~~~~~i~s 839 (903)
.+.........+.+ ++++.+.|+.+ .+..||..+..- ..+..+... ....
T Consensus 383 ~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W-~~v~~m~~~--r~~~ 457 (557)
T PHA02713 383 PDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW-ETLPNFWTG--TIRP 457 (557)
T ss_pred CCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE-eecCCCCcc--cccC
Confidence 11111111222222 46766666532 467777765421 111111111 1111
Q ss_pred EEEeCCCCEEEEEECC------CeEEEEECCC-CcEEEEc---cCCCCEEEEEEecCCCEEEEEecCC--cEEEc
Q 002591 840 CVFHPTYPSLLVIGCY------QSLELWNMSE-NKTMTLT---AHEGLIAALAVSTETGYVASASHDK--FVKLW 902 (903)
Q Consensus 840 i~~sp~g~~l~t~s~d------g~I~vwdl~~-~~~~~~~---~h~~~V~sl~~spdg~~LaSgs~DG--~I~IW 902 (903)
.+..-+++..++|+.+ ..|..||..+ ++...+. .....+..++ -++++.++|+.|| .+..|
T Consensus 458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhc
Confidence 1222345556666654 2578899988 5554222 2222222222 3788889999888 44444
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0037 Score=63.43 Aligned_cols=139 Identities=14% Similarity=0.051 Sum_probs=79.2
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeec---Cce-e
Q 002591 679 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKG---GTA-Q 753 (903)
Q Consensus 679 ~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~-~~~~~~~---~~~-~ 753 (903)
.|...+.||.|+-++++.-....+.-.-|..-..-+.+. . -+++|+.+|.|++|...-.- ....+.. .+. .
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~---~-~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTAS---A-KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecccC---c-eEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 344456688888887765222222222222221112222 2 34578889999999887321 1111111 111 1
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCC-CCeEEEEEcCCCCEEEEE--eCC-eEEEEECCCC
Q 002591 754 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-KPIDSVCWDPSGELLASV--SED-SVRVWTVGSG 821 (903)
Q Consensus 754 v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~-~~V~sl~~spdg~~lasg--s~d-~I~iwdl~s~ 821 (903)
+....++...++++.++.|+.|.+.-.+.+.....|. .++..+.....+++|+.. +.+ .++.|++...
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 2222333467778889999999998888777777676 555555555556666666 555 6777777543
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.38 E-value=2 Score=46.90 Aligned_cols=267 Identities=12% Similarity=0.111 Sum_probs=119.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEec--cC---CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLE--EH---SSLITDVRFSPSMPRLATSSFDKTVRVWDADN 696 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~-t~~~~~~l~--~h---~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~ 696 (903)
...+.+|.|..+..-+|+|. .+.| +... -++.-.... .. .....+|.|..+ ..+++ +..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ll~T~D- 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG-LLLHTTD- 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETT-EEEEESS-
T ss_pred CCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCc-eEEEecC-
Confidence 44899999996666666664 4543 3333 333222211 11 234677888643 34444 4455 3333333
Q ss_pred CCceeEEec---cCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-e---ecCceeEEEecCCCEEEEEEcC
Q 002591 697 PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-F---KGGTAQMRFQPHLGRYLAAAAE 769 (903)
Q Consensus 697 ~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~-~---~~~~~~v~~sp~~~~ll~~s~d 769 (903)
.+..-..+. .-......+....++ ..+++ +..|.|+. ....++.-.. . .+.+..+...+++.+++++...
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~-~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDG-SAELA-GDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETT-EEEEE-ETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEE-cCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 344433332 122333444444333 23323 33454432 2222322111 1 2344556667777766666555
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC-CCCC-cceEEEeecCCCceEEEEEeCCCC
Q 002591 770 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG-SGSE-GECVHELSCNGNKFHSCVFHPTYP 847 (903)
Q Consensus 770 g~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~-s~~~-~~~i~~~~~~~~~i~si~~sp~g~ 847 (903)
..+.-||.-...-...-......|.++.|.|++.+.+++....|++=+.. ..+. .+.+..+......+..++|.++..
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~ 245 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE 245 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC
Confidence 55667776543222222335688999999999887776644477776621 1100 001111222344588999998876
Q ss_pred EEEEEECCCeEEEEECCCCcEEEEc----cCCCCEEEEEEecCCCEEEEEecCCcEEEc
Q 002591 848 SLLVIGCYQSLELWNMSENKTMTLT----AHEGLIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 848 ~l~t~s~dg~I~vwdl~~~~~~~~~----~h~~~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
..+ ++..|.| +.....|+.-... .-...++.|.|..+.+-+|.| .||.|.-|
T Consensus 246 ~wa-~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 246 IWA-VGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp EEE-EESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred EEE-EeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 555 5555543 4455566554322 235568889997665555555 78887655
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=2.3 Score=47.43 Aligned_cols=267 Identities=10% Similarity=0.069 Sum_probs=131.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCceeEEec----cCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLE----EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 697 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~-~t~~~~~~l~----~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~ 697 (903)
...+++|+|.....-+|+|. +|.| |.. +.++.-.... .....+.+|.|..+ ..+++ +..+. ||..++.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~--i~~S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSL--LLHTTDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCce--EEEECCC
Confidence 55899999986666677664 4533 332 2222222211 12344778888754 34444 44443 3333433
Q ss_pred CceeEEecc---CCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----ecCceeEEEecCCCEEEEEEcCC
Q 002591 698 GYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRYLAAAAEN 770 (903)
Q Consensus 698 ~~~~~~~~~---h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~----~~~~~~v~~sp~~~~ll~~s~dg 770 (903)
++....+.. .......+..... ..++ .++..|.|..=+ ..++.-..+ .+....+.+.+++ .+++.+..|
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~-~~~~-~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g-~~v~~g~~G 193 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGP-GTAE-MATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDG-KYVAVSSRG 193 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECC-Ccce-eeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCC-eEEEEeCCc
Confidence 433333210 1111122222212 2233 233344443222 122221111 2345567777764 455666666
Q ss_pred eEEEE-ECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEe-ecCCCceEEEEEeCCCCE
Q 002591 771 VVSIL-DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPS 848 (903)
Q Consensus 771 ~I~i~-D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~-~~~~~~i~si~~sp~g~~ 848 (903)
.+..- |.....-......-...++++.+.+++.+++++..+.+++=....+.....+..- ......+..+.+.+++.
T Consensus 194 ~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~- 272 (334)
T PRK13684 194 NFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE- 272 (334)
T ss_pred eEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-
Confidence 55542 2221112222223456789999999999887776665432223333222211110 11124577888988776
Q ss_pred EEEEECCCeEEEEECCCCcEEE-Ec---cCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 849 LLVIGCYQSLELWNMSENKTMT-LT---AHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 849 l~t~s~dg~I~vwdl~~~~~~~-~~---~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+++++.+|.|.. ....++... .. .-....+.+.|..+++.+++ +..|.|-.|+
T Consensus 273 ~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 273 IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 556666776653 445554432 21 22345788888777776665 4677776653
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.33 E-value=2 Score=48.59 Aligned_cols=102 Identities=19% Similarity=0.205 Sum_probs=58.4
Q ss_pred CCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEECC--CCc--eeEEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002591 624 SKVICCHFSSDGKLLATGG-----------HDK-KAVLWHTD--TLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDK 687 (903)
Q Consensus 624 ~~V~~l~fspdg~~Latgs-----------~Dg-~V~vWd~~--t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 687 (903)
.....|+|.++|+++++-. ..+ .|.+++-. .++ ....+.......+.|+|.+++ |++++.+.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4678899999998777643 223 67777643 233 234444444557889999988 44445454
Q ss_pred cEEEEeCCCCC----c---eeEEecc----CCCceEEEEecCCCCeEEEEE
Q 002591 688 TVRVWDADNPG----Y---SLRTFMG----HSASVMSLDFHPNKDDLICSC 727 (903)
Q Consensus 688 ~I~IWDl~~~~----~---~~~~~~~----h~~~V~sl~fsp~~~~ll~sg 727 (903)
.+++.|.+..+ + .+..+.. +......++|.|++..++..+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 33444654322 1 1122222 123467789999876444333
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=2.9 Score=47.74 Aligned_cols=110 Identities=12% Similarity=0.111 Sum_probs=66.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcc--eEEEeec--CCCceEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002591 789 HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE--CVHELSC--NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 789 h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~--~i~~~~~--~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~ 864 (903)
....+.++.|.+++.+++++..+.+ +|....+.... .+..... ....+..+.|.+++. +++++..|.|.... .
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D 355 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-D 355 (398)
T ss_pred CccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-C
Confidence 3456889999999998877765543 33333332111 2222221 223588888887765 66677777666654 4
Q ss_pred CCcEEEE----ccCCCCEEEEEEecCCCEEEEEecCCcEEEc
Q 002591 865 ENKTMTL----TAHEGLIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 865 ~~~~~~~----~~h~~~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
.++.... ..-...++.+.|..+++.+++| .+|.|.-|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 4544322 2334578899998777766665 68877655
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.017 Score=66.23 Aligned_cols=79 Identities=22% Similarity=0.253 Sum_probs=67.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceE-EEEecCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002591 665 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSC 743 (903)
Q Consensus 665 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~-sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~ 743 (903)
...|.-+.|+|.-.+||++..+|.|.++.+. ...+.++.-|...++ +++|.|||+ +++.|-.||+|++.|++++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence 3457889999999999999999999999887 455677776777777 999999965 788999999999999999887
Q ss_pred eEE
Q 002591 744 TRV 746 (903)
Q Consensus 744 ~~~ 746 (903)
+..
T Consensus 97 l~~ 99 (665)
T KOG4640|consen 97 LVS 99 (665)
T ss_pred eec
Confidence 655
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.19 E-value=3.3 Score=47.37 Aligned_cols=222 Identities=10% Similarity=0.136 Sum_probs=120.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCce---eEEeccCCCceEEEEecC---C-CCeEEEEEeCCCcEEEEEcCCC--e-----
Q 002591 677 MPRLATSSFDKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHP---N-KDDLICSCDGDGEIRYWSINNG--S----- 742 (903)
Q Consensus 677 g~~Lasgs~Dg~I~IWDl~~~~~~---~~~~~~h~~~V~sl~fsp---~-~~~ll~sgs~Dg~I~iwDi~t~--~----- 742 (903)
...|++|+..|.++||+....+.. +..-..-..+|..|..-. . ....| +.-.-..+.||.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~L-aVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQL-AVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceE-EEecCCEEEEEEEEecCCCcccCc
Confidence 458999999999999998653311 222223456777776532 2 22233 3344677788877321 1
Q ss_pred ---eeEEee----cCceeEEEecCC-----CEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002591 743 ---CTRVFK----GGTAQMRFQPHL-----GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 810 (903)
Q Consensus 743 ---~~~~~~----~~~~~v~~sp~~-----~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~ 810 (903)
....++ .....+++-+-+ ..+.+=+.||.+.+|+-+.....+.+.. ----..++|.+.-+.|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 111111 222334443332 4566678899999999887765555543 112234578888888888888
Q ss_pred C-eEEEEECCCC--------------------CCcceEEEeecCCCceEEEE---EeCCCCEEEEEECCCeEEEEECCCC
Q 002591 811 D-SVRVWTVGSG--------------------SEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGCYQSLELWNMSEN 866 (903)
Q Consensus 811 d-~I~iwdl~s~--------------------~~~~~i~~~~~~~~~i~si~---~sp~g~~l~t~s~dg~I~vwdl~~~ 866 (903)
+ .|..|....- +....-..+.. +..+..+. ++.....|++-+ ..++.+.+.. |
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~-G 271 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN-G 271 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-C
Confidence 7 8888876321 11111112221 22333333 333333344443 4566666664 4
Q ss_pred cEEEEccCCCCEEEEE-Ee----cCC---CEEEEEecCCcEEEcC
Q 002591 867 KTMTLTAHEGLIAALA-VS----TET---GYVASASHDKFVKLWK 903 (903)
Q Consensus 867 ~~~~~~~h~~~V~sl~-~s----pdg---~~LaSgs~DG~I~IWd 903 (903)
.+......+....|++ |. .++ ..++.+++++.+.||+
T Consensus 272 ~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 272 SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 4443333333333332 21 122 2488899999999884
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.18 E-value=2.1 Score=45.05 Aligned_cols=238 Identities=12% Similarity=0.026 Sum_probs=145.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEe
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 704 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~ 704 (903)
.-..|+-.+||..-+++...+.|--.|-.+++....--+....-..|..-||+..-++-+.. -|.-.|-++.......+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 45678888999988998888888888988998887776766677788888998877765443 35555555422222222
Q ss_pred c--cCCCceEEEEecCCCCeEEEEEeC---------CCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEE
Q 002591 705 M--GHSASVMSLDFHPNKDDLICSCDG---------DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVS 773 (903)
Q Consensus 705 ~--~h~~~V~sl~fsp~~~~ll~sgs~---------Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~ 773 (903)
. .-........|.+.|...| ++.. .+.|++|+...+ .....+|..|++...++.-.++.|.
T Consensus 142 p~~~a~~nlet~vfD~~G~lWF-t~q~G~yGrLdPa~~~i~vfpaPqG-------~gpyGi~atpdGsvwyaslagnaia 213 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWF-TGQIGAYGRLDPARNVISVFPAPQG-------GGPYGICATPDGSVWYASLAGNAIA 213 (353)
T ss_pred ccccCCCcccceeeCCCccEEE-eeccccceecCcccCceeeeccCCC-------CCCcceEECCCCcEEEEeccccceE
Confidence 1 2234566788888876444 6542 123444443322 2456789999999988888888898
Q ss_pred EEECCCCeEEEEe--cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 002591 774 ILDAETQACRLSL--QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 850 (903)
Q Consensus 774 i~D~~t~~~~~~l--~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~ 850 (903)
..|..++.....- .........+--+|-|..-++.... .+..||-.... ..-..+.+....-.++.....++..+
T Consensus 214 ridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grVW~ 291 (353)
T COG4257 214 RIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVWL 291 (353)
T ss_pred EcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcEEe
Confidence 8888877322111 1112234445556667766654444 67777765431 22233333344445555555555444
Q ss_pred EEECCCeEEEEECCCCcEEEEcc
Q 002591 851 VIGCYQSLELWNMSENKTMTLTA 873 (903)
Q Consensus 851 t~s~dg~I~vwdl~~~~~~~~~~ 873 (903)
.-...+.|.-||-++.....+..
T Consensus 292 sea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 292 SEADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred eccccCceeecCcccceEEEecC
Confidence 44445667777776665554443
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.8 Score=48.54 Aligned_cols=186 Identities=17% Similarity=0.180 Sum_probs=111.4
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEEC----CCCCE--EEEEeC-C---CcEEEEeCCCCCceeE
Q 002591 633 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS----PSMPR--LATSSF-D---KTVRVWDADNPGYSLR 702 (903)
Q Consensus 633 pdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fs----pdg~~--Lasgs~-D---g~I~IWDl~~~~~~~~ 702 (903)
|...+|+...+++-+.+||++ |+.+..+.. +.++.|... -+++. |+.++. + .+|++|.++.....+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 344577777888889999986 566666642 334444332 13332 444443 2 4699998864223344
Q ss_pred Eecc-------CCCceEEEEec--C-CCCeEEEEEeCCCcEEEEEcC---CC----eeeEEeec--CceeEEEecCCCEE
Q 002591 703 TFMG-------HSASVMSLDFH--P-NKDDLICSCDGDGEIRYWSIN---NG----SCTRVFKG--GTAQMRFQPHLGRY 763 (903)
Q Consensus 703 ~~~~-------h~~~V~sl~fs--p-~~~~ll~sgs~Dg~I~iwDi~---t~----~~~~~~~~--~~~~v~~sp~~~~l 763 (903)
.+.. ....++.+|+. + ++..+++....+|.+..|.+. .+ +.++.|.. .+..|......+.+
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 3322 12347778874 3 355667778889999888774 23 35666654 45667888888999
Q ss_pred EEEEcCCeEEEEECCC-----CeEEEEecC--CCCCeEEEEEc--CCCC-EEEEEeCC--eEEEEECCCC
Q 002591 764 LAAAAENVVSILDAET-----QACRLSLQG--HTKPIDSVCWD--PSGE-LLASVSED--SVRVWTVGSG 821 (903)
Q Consensus 764 l~~s~dg~I~i~D~~t-----~~~~~~l~~--h~~~V~sl~~s--pdg~-~lasgs~d--~I~iwdl~s~ 821 (903)
+++-.+--|.-|+.+- +..+....+ ....|..|++- .+++ ||++.+.+ +..||+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999999998762 233333322 34567788774 3454 67766665 8999998754
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0086 Score=42.09 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhcCCCC
Q 002591 9 DKMLDVYIHDYLVKRDLKASAQAFQAEGKVS 39 (903)
Q Consensus 9 ~~~l~~yiydyl~~~~~~~~a~a~~~e~~~~ 39 (903)
++.|+..|++||.+.|+.++|++|..|..+.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 5668999999999999999999999997654
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.49 Score=49.87 Aligned_cols=169 Identities=18% Similarity=0.194 Sum_probs=108.7
Q ss_pred cCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEE-cCC-eEEEEECCCCeEEEEecCCCCC--
Q 002591 717 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA-AEN-VVSILDAETQACRLSLQGHTKP-- 792 (903)
Q Consensus 717 sp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s-~dg-~I~i~D~~t~~~~~~l~~h~~~-- 792 (903)
..++.+.+++.+++|.|..- ..+......+.++|....-++-. .-| ...+||........++...+..
T Consensus 44 ~~dgs~g~a~~~eaGk~v~~--------~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf 115 (366)
T COG3490 44 ARDGSFGAATLSEAGKIVFA--------TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF 115 (366)
T ss_pred ccCCceeEEEEccCCceeee--------eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee
Confidence 44556566666666554211 11222344567777765544433 334 4677888877655544332221
Q ss_pred eEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEC------C-----
Q 002591 793 IDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------Y----- 855 (903)
Q Consensus 793 V~sl~~spdg~~lasgs~d------~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~------d----- 855 (903)
.-.-+|++||.+|+..-.| .|-|||.+. ....+-++..|.-....+.+.+||+.++++.. |
T Consensus 116 yGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~--~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~ 193 (366)
T COG3490 116 YGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE--GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTE 193 (366)
T ss_pred ecccccCCCCcEEEeecCCCCCCCceEEEEeccc--ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccc
Confidence 2234799999999877554 489999984 35677788888888899999999999888754 1
Q ss_pred -------CeEEEEECCCCcEE---EEc--cCCCCEEEEEEecCCCEEEEEec
Q 002591 856 -------QSLELWNMSENKTM---TLT--AHEGLIAALAVSTETGYVASASH 895 (903)
Q Consensus 856 -------g~I~vwdl~~~~~~---~~~--~h~~~V~sl~~spdg~~LaSgs~ 895 (903)
-++.+.|..++.++ ++. .+.-.|..++..+||..++.+-.
T Consensus 194 lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 194 LNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred cchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 14556676666665 333 35567889999999887766543
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.39 Score=53.50 Aligned_cols=120 Identities=16% Similarity=0.175 Sum_probs=86.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce----eEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 002591 622 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 697 (903)
Q Consensus 622 H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~----~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~ 697 (903)
..++|.+|.||+|.+.||+--.|++|.+++....+. ..+.+..+..|...+|+.+ .-+|.....| +.+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 466999999999999999999999999999742222 2223345566999999876 5566666555 888888776
Q ss_pred CceeEEeccCCCceEEEEecCCCCeEEEEEe-CCCcEEEEEcCCCee
Q 002591 698 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSC 743 (903)
Q Consensus 698 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs-~Dg~I~iwDi~t~~~ 743 (903)
...++..+.|...|....|.++..-++.+.+ ..+++.=+-++++..
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeecee
Confidence 6778888889999999999998765544443 344444455555443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.98 E-value=3.2 Score=45.40 Aligned_cols=220 Identities=13% Similarity=0.127 Sum_probs=104.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEecc--C---CCceEEEEecCCCCeEEEEEeCCCcEEEEEcC
Q 002591 665 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--H---SASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 739 (903)
Q Consensus 665 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~--h---~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~ 739 (903)
...+.+|.|..+..-+++|. .+. |+...+.++.-..... . .....+|.|.. ...+++| ..+ +.+....
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTD 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESS
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecC
Confidence 45789999996565666655 453 4444444443322221 1 12366777764 3344444 344 3344444
Q ss_pred CCeeeEEe------ecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-e
Q 002591 740 NGSCTRVF------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S 812 (903)
Q Consensus 740 t~~~~~~~------~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~ 812 (903)
.++.-..+ .+....+....+ +..++++..|.|+.-.-.-..-..........+..+..++||.+++++..+ .
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~-~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGD-GSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEET-TEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCC-CcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 44422221 122222333333 233444444444332211112222334455778889999999999999888 6
Q ss_pred EEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEE-CCCCcEEE---Ec--cCCCCEEEEEEecC
Q 002591 813 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN-MSENKTMT---LT--AHEGLIAALAVSTE 886 (903)
Q Consensus 813 I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwd-l~~~~~~~---~~--~h~~~V~sl~~spd 886 (903)
+.-||-... .-..+. ......|..+.|.+++...+ ....+.|++=+ ....+... .. ...-.+.+++|.++
T Consensus 168 ~~s~~~G~~--~w~~~~-r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 168 YSSWDPGQT--TWQPHN-RNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp EEEE-TT-S--S-EEEE---SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred EEEecCCCc--cceEEc-cCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 677875421 111222 22367899999999977555 45888888887 22222221 11 12234889999998
Q ss_pred CCEEEEEecC
Q 002591 887 TGYVASASHD 896 (903)
Q Consensus 887 g~~LaSgs~D 896 (903)
+...++|+..
T Consensus 244 ~~~wa~gg~G 253 (302)
T PF14870_consen 244 NEIWAVGGSG 253 (302)
T ss_dssp S-EEEEESTT
T ss_pred CCEEEEeCCc
Confidence 8888776644
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=4.1 Score=46.14 Aligned_cols=149 Identities=14% Similarity=0.119 Sum_probs=87.0
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEeccC--CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCC-C
Q 002591 633 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-A 709 (903)
Q Consensus 633 pdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~-~ 709 (903)
.++ .++++..||.|.-.|.+++..+.....- ...+.+-.+..+|+ |+.++.++.++.+|.++ +..+..+.... .
T Consensus 67 ~dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~-G~~~W~~~~~~~~ 143 (370)
T COG1520 67 GDG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDAST-GTLVWSRNVGGSP 143 (370)
T ss_pred eCC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCC-CcEEEEEecCCCe
Confidence 344 4455577888888888887765433322 12333333333564 78888899888888875 55565555444 1
Q ss_pred ceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc-ee--EEE--ecCCCEEEEEEc--CCeEEEEECCCCeE
Q 002591 710 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT-AQ--MRF--QPHLGRYLAAAA--ENVVSILDAETQAC 782 (903)
Q Consensus 710 ~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~-~~--v~~--sp~~~~ll~~s~--dg~I~i~D~~t~~~ 782 (903)
.+..-....++ .++.++.++.+...|..+++.+..+.... .. +.. ....+.++.+.. ++.+.-+|.+++..
T Consensus 144 ~~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 144 YYASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred EEecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcE
Confidence 12222222222 34445578999999999888766654322 11 111 123355555555 56788888888877
Q ss_pred EEEe
Q 002591 783 RLSL 786 (903)
Q Consensus 783 ~~~l 786 (903)
+...
T Consensus 222 ~w~~ 225 (370)
T COG1520 222 KWSQ 225 (370)
T ss_pred eeee
Confidence 7664
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=95.68 E-value=3.7 Score=51.33 Aligned_cols=177 Identities=14% Similarity=0.193 Sum_probs=102.2
Q ss_pred cCCCCeEEEEEC---C--C--CCEEEEEeCCCcEEEEeC------CCCC--------ceeEEecc---CCCceEEEEecC
Q 002591 663 EHSSLITDVRFS---P--S--MPRLATSSFDKTVRVWDA------DNPG--------YSLRTFMG---HSASVMSLDFHP 718 (903)
Q Consensus 663 ~h~~~V~~l~fs---p--d--g~~Lasgs~Dg~I~IWDl------~~~~--------~~~~~~~~---h~~~V~sl~fsp 718 (903)
....+|..|+|. . + .++|++ -....+.|+.. .... .++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 466788888887 2 1 224444 34555666661 1100 12233321 234567899999
Q ss_pred CCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEE
Q 002591 719 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 798 (903)
Q Consensus 719 ~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~ 798 (903)
....-||..+..|...|||+......+ .. ..-+.....|.| ++|... .+....|+|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~---~~----------~~~~~~~~~gsi-~~d~~e----------~s~w~rI~W 211 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRK---SS----------NLRLSRNISGSI-IFDPEE----------LSNWKRILW 211 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccC---Cc----------ceeeccCCCccc-cCCCcc----------cCcceeeEe
Confidence 877788899999999999992211110 00 011111122333 333221 145568899
Q ss_pred cCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 002591 799 DPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 865 (903)
Q Consensus 799 spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~ 865 (903)
..+...|+.++...+.++|+.+......+. .......|..+.-++.....+..-....|..+|+..
T Consensus 212 ~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~-~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 212 VSDSNRLLVCNRSKLMLIDFESNWQTEYLV-TAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred cCCCCEEEEEcCCceEEEECCCCCccchhc-cCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 988888888888899999998765433222 222356688888777633222222346677777766
|
These proteins are found in fungi. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.63 E-value=1.1 Score=55.15 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=45.1
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeEEeecCce---------------eEEEec--CCCEEEEEEc----------CCeEEEE
Q 002591 723 LICSCDGDGEIRYWSINNGSCTRVFKGGTA---------------QMRFQP--HLGRYLAAAA----------ENVVSIL 775 (903)
Q Consensus 723 ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~---------------~v~~sp--~~~~ll~~s~----------dg~I~i~ 775 (903)
.|+.++.|+.|.-.|.++|+.+..|..... .+...| .++.+++++. +|.|+-|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 344777899999999999998876532100 011111 2456777643 5889999
Q ss_pred ECCCCeEEEEecC
Q 002591 776 DAETQACRLSLQG 788 (903)
Q Consensus 776 D~~t~~~~~~l~~ 788 (903)
|.++|+.+..+..
T Consensus 342 Da~TGkl~W~~~~ 354 (764)
T TIGR03074 342 DVNTGALVWAWDP 354 (764)
T ss_pred ECCCCcEeeEEec
Confidence 9999999988763
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.031 Score=56.88 Aligned_cols=134 Identities=13% Similarity=0.052 Sum_probs=75.9
Q ss_pred EEEeCCCcEEEEECCCCceeE-EeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEec
Q 002591 639 ATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 717 (903)
Q Consensus 639 atgs~Dg~V~vWd~~t~~~~~-~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fs 717 (903)
...+.||.|+-+++...+... .-..|...-. ...-+..|++|+.+|.|.+|...-.+.....+..-...|.++.-.
T Consensus 34 ~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~---v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 34 RATSADGLVRERKVRKHKESCRSERFIDEGQR---VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred ccccCCcccccchhhhhhhhhhhhhhhhccee---ecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 334567777777765322211 1111222211 122345799999999999998874444433333334445444333
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCC
Q 002591 718 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ 780 (903)
Q Consensus 718 p~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~ 780 (903)
-+...+.+++..||.||.|++.-.+.+.....+.. ..+..+++.++++.|.+|++...
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-----~~~e~~ivv~sd~~i~~a~~S~d 168 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-----ESGEELIVVGSDEFLKIADTSHD 168 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccC-----CCcceeEEecCCceEEeeccccc
Confidence 33334888999999999999988776654432221 23345555555666666654443
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.4 Score=49.29 Aligned_cols=174 Identities=9% Similarity=-0.000 Sum_probs=80.5
Q ss_pred CeEEEEEeCC-----CcEEEEEcCCCeeeEEee-------cC-ceeEEEecCCCEEEEEEcC-----------CeEEEEE
Q 002591 721 DDLICSCDGD-----GEIRYWSINNGSCTRVFK-------GG-TAQMRFQPHLGRYLAAAAE-----------NVVSILD 776 (903)
Q Consensus 721 ~~ll~sgs~D-----g~I~iwDi~t~~~~~~~~-------~~-~~~v~~sp~~~~ll~~s~d-----------g~I~i~D 776 (903)
+.+++.|+.+ ..|.+||+.+.+....-. .. ........++..++.++.+ ..|.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 4566677653 357889988765443211 01 1112222334455555543 2577889
Q ss_pred CCCCeEEEEecC----CCCCeEEEEEcCCCCEEEEEeC--------------CeEEEEECCCCCCcceEEEee--cCCCc
Q 002591 777 AETQACRLSLQG----HTKPIDSVCWDPSGELLASVSE--------------DSVRVWTVGSGSEGECVHELS--CNGNK 836 (903)
Q Consensus 777 ~~t~~~~~~l~~----h~~~V~sl~~spdg~~lasgs~--------------d~I~iwdl~s~~~~~~i~~~~--~~~~~ 836 (903)
.++.+-...-.. ....-.+++. -++++++.++. +.|.+||+.+..- ..+.... .....
T Consensus 166 ~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W-~~~~~~g~~P~~r~ 243 (341)
T PLN02153 166 IADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW-TEVETTGAKPSARS 243 (341)
T ss_pred CCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcE-EeccccCCCCCCcc
Confidence 887643321110 0111112222 24565554331 2588888876421 1111110 00111
Q ss_pred eEEEEEeCCCCEEEEEECC--------------CeEEEEECCCCcEEEEccC------CCC--EEEEEEecCCCEEEEEe
Q 002591 837 FHSCVFHPTYPSLLVIGCY--------------QSLELWNMSENKTMTLTAH------EGL--IAALAVSTETGYVASAS 894 (903)
Q Consensus 837 i~si~~sp~g~~l~t~s~d--------------g~I~vwdl~~~~~~~~~~h------~~~--V~sl~~spdg~~LaSgs 894 (903)
..+++ .-++..++.|+.. +.|+.||..+.+...+... ... ..++.+.-++++++.|+
T Consensus 244 ~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 244 VFAHA-VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGG 322 (341)
T ss_pred eeeeE-EECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcC
Confidence 12222 2245666666641 2688889887765543311 111 22333444556777777
Q ss_pred cCC
Q 002591 895 HDK 897 (903)
Q Consensus 895 ~DG 897 (903)
.++
T Consensus 323 ~~~ 325 (341)
T PLN02153 323 KLP 325 (341)
T ss_pred cCC
Confidence 643
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.41 E-value=1 Score=52.01 Aligned_cols=146 Identities=11% Similarity=0.215 Sum_probs=91.4
Q ss_pred CCCeEEEEECCCCCEEEEEe--CCCcEEEEeCCCCCceeEEeccCCCceEEEEecCC----CCeEEEEEeCCCcEEEEEc
Q 002591 665 SSLITDVRFSPSMPRLATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSI 738 (903)
Q Consensus 665 ~~~V~~l~fspdg~~Lasgs--~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwDi 738 (903)
-.+|..++|......+++.- .+|.+++=|- ..+. .-..|..+.|.|- ...++ +.-....|.+|-+
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds----~viG----qFEhV~GlsW~P~~~~~~paLL-AVQHkkhVtVWqL 89 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS----KVIG----QFEHVHGLSWAPPCTADTPALL-AVQHKKHVTVWQL 89 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCc----cEee----ccceeeeeeecCcccCCCCceE-EEeccceEEEEEe
Confidence 45688999984444445442 2444443322 2233 3345889999885 34466 4556789999987
Q ss_pred CC-----CeeeEEee--------cCceeEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEecCCCCCeEEEEEcCCCC
Q 002591 739 NN-----GSCTRVFK--------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGE 803 (903)
Q Consensus 739 ~t-----~~~~~~~~--------~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~--~~~~l~~h~~~V~sl~~spdg~ 803 (903)
.- .+.+..-. .-...+.|+|....+.+-.....-.+++++... ....+ ...+.|.|.||..||.
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQ 168 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCC
Confidence 52 22221111 122347799998888877776666666766543 33334 3567899999999999
Q ss_pred EEEEEeCC--eEEEEECCC
Q 002591 804 LLASVSED--SVRVWTVGS 820 (903)
Q Consensus 804 ~lasgs~d--~I~iwdl~s 820 (903)
.|+.+-.. .-+|||-..
T Consensus 169 RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEEEeCCeEEEEEecCch
Confidence 66665544 789998654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.6 Score=55.82 Aligned_cols=154 Identities=9% Similarity=0.033 Sum_probs=75.0
Q ss_pred CeEEEEEeCC-----CcEEEEEcCCCeeeEEe--ecCc-eeEEEecCCCEEEEEEcC------CeEEEEECCCCeEEEEe
Q 002591 721 DDLICSCDGD-----GEIRYWSINNGSCTRVF--KGGT-AQMRFQPHLGRYLAAAAE------NVVSILDAETQACRLSL 786 (903)
Q Consensus 721 ~~ll~sgs~D-----g~I~iwDi~t~~~~~~~--~~~~-~~v~~sp~~~~ll~~s~d------g~I~i~D~~t~~~~~~l 786 (903)
+.+++.|+.+ ..+..||..+.+....- ..+. .......++..++.|+.+ +.+..||..+.+-...-
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 4566677765 34778888776543321 1111 111222344555555531 46888998876433211
Q ss_pred cCCCC-CeEEEEEcCCCCEEEEEeCC---------eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECC-
Q 002591 787 QGHTK-PIDSVCWDPSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY- 855 (903)
Q Consensus 787 ~~h~~-~V~sl~~spdg~~lasgs~d---------~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~d- 855 (903)
..... .-.+++. .++.+++.|+.+ .+.+||..+..- ..+..+.........+.+ +++.+++|+.+
T Consensus 423 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~ 498 (534)
T PHA03098 423 PLPISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW-TELSSLNFPRINASLCIF--NNKIYVVGGDKY 498 (534)
T ss_pred CCCccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCce-eeCCCCCcccccceEEEE--CCEEEEEcCCcC
Confidence 10001 1112222 345666665532 388888876421 111111111111122222 56666666654
Q ss_pred ----CeEEEEECCCCcEEEEccCCCCE
Q 002591 856 ----QSLELWNMSENKTMTLTAHEGLI 878 (903)
Q Consensus 856 ----g~I~vwdl~~~~~~~~~~h~~~V 878 (903)
+.|.+||..+++...+......+
T Consensus 499 ~~~~~~v~~yd~~~~~W~~~~~~p~~~ 525 (534)
T PHA03098 499 EYYINEIEVYDDKTNTWTLFCKFPKVI 525 (534)
T ss_pred CcccceeEEEeCCCCEEEecCCCcccc
Confidence 47899999888766544433333
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.26 E-value=3.7 Score=43.30 Aligned_cols=209 Identities=16% Similarity=0.107 Sum_probs=126.5
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-
Q 002591 668 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV- 746 (903)
Q Consensus 668 V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~- 746 (903)
-..|+-.+||..-+++...+.|--.|-.+ ++....-.+....-..|..-|++...|+ ....-|.-.|.++.+..+-
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~t-Gev~~ypLg~Ga~Phgiv~gpdg~~Wit--d~~~aI~R~dpkt~evt~f~ 140 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPAT-GEVETYPLGSGASPHGIVVGPDGSAWIT--DTGLAIGRLDPKTLEVTRFP 140 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCC-CceEEEecCCCCCCceEEECCCCCeeEe--cCcceeEEecCcccceEEee
Confidence 45667788888888888888888788877 5544444455556667888888876662 2222566667766654331
Q ss_pred e-----ecCceeEEEecCCCEEEEEEc---------CCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-
Q 002591 747 F-----KGGTAQMRFQPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED- 811 (903)
Q Consensus 747 ~-----~~~~~~v~~sp~~~~ll~~s~---------dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d- 811 (903)
+ ........|.+++...+++.. .+.|++|+.-. ...-..||..|+|.+.++.-.+
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyGi~atpdGsvwyaslagn 210 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYGICATPDGSVWYASLAGN 210 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC----------CCCCcceEECCCCcEEEEecccc
Confidence 1 134566778888887777653 13455554432 2345678999999976665555
Q ss_pred eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE--EEccCCCCEEEEEEecCCCE
Q 002591 812 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGY 889 (903)
Q Consensus 812 ~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~--~~~~h~~~V~sl~~spdg~~ 889 (903)
.|...|..++.. +.+..-.........+-.+|-++.-++....+.+.-||-...... .+.+....-.++.++..++.
T Consensus 211 aiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grV 289 (353)
T COG4257 211 AIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRV 289 (353)
T ss_pred ceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcE
Confidence 777777666521 222222221333455566777877777777778888887665543 33344444444444444443
Q ss_pred E
Q 002591 890 V 890 (903)
Q Consensus 890 L 890 (903)
.
T Consensus 290 W 290 (353)
T COG4257 290 W 290 (353)
T ss_pred E
Confidence 3
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=95.21 E-value=6.2 Score=43.39 Aligned_cols=229 Identities=11% Similarity=0.003 Sum_probs=108.3
Q ss_pred CCCEEEEEeCCCcEEEEECCC--CceeEEeccCCCCeEEEEECCCCCEEEEEeC-CCcEEEEeCCCCC------------
Q 002591 634 DGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPG------------ 698 (903)
Q Consensus 634 dg~~Latgs~Dg~V~vWd~~t--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~IWDl~~~~------------ 698 (903)
++++|+.|+.+|.. +.++.. .+..+. .+...|+++...+.-..|++-+. ...++++++..-.
T Consensus 12 ~~~~lL~GTe~Gly-~~~~~~~~~~~~kl--~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLY-VLNISDQPGTLEKL--IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceE-EEEcccCCCCeEEe--cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 34689999999854 444553 223333 34568999999888777666653 3449999984211
Q ss_pred --ceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCC--e--eeEEe---e----cCceeEEEecC--CCEE
Q 002591 699 --YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--S--CTRVF---K----GGTAQMRFQPH--LGRY 763 (903)
Q Consensus 699 --~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~--~--~~~~~---~----~~~~~v~~sp~--~~~l 763 (903)
+.......|.....-+++......+++++.....|.++..... + ..+.+ . .....+..++. ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 0011122344433333333222223334444566666544322 1 12211 0 11111222222 3466
Q ss_pred EEEEcCCeEEEEECCC--CeE-----EEEecCCC-CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCC
Q 002591 764 LAAAAENVVSILDAET--QAC-----RLSLQGHT-KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGN 835 (903)
Q Consensus 764 l~~s~dg~I~i~D~~t--~~~-----~~~l~~h~-~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~ 835 (903)
++|+..+...++++.. ... -....... .++..+. -+++.++++ -++...+.|...... .....+.- ..
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e~Llc-~~~~~v~Vn~~G~~~-~r~~~l~w-~~ 244 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDEFLLC-YDEFGVFVNLYGKRR-SRNPILHW-EF 244 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEE-ECCCeEEEE-ECcEEEEEeCCCCcc-ccceEEEc-CC
Confidence 6666643344444422 110 00011111 3333333 344555544 344444445432111 11111221 33
Q ss_pred ceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEEEEc
Q 002591 836 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT 872 (903)
Q Consensus 836 ~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~ 872 (903)
...++++. ..+|++-+ ++.|.|+++.+++.+...
T Consensus 245 ~p~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i 278 (302)
T smart00036 245 MPESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQEL 278 (302)
T ss_pred cccEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEE
Confidence 45566776 35666665 556999999999877433
|
Unpublished observations. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.19 Score=61.25 Aligned_cols=72 Identities=25% Similarity=0.382 Sum_probs=57.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEE---ECCCCCEEEEEeCCCcEEEEeC
Q 002591 621 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR---FSPSMPRLATSSFDKTVRVWDA 694 (903)
Q Consensus 621 ~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~---fspdg~~Lasgs~Dg~I~IWDl 694 (903)
.-.++|+|++|+.+|++++.|-.+|.|.+||+..++.++.+..|..+++.+- +..++..++++...|. +|.+
T Consensus 128 ~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 128 RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4567999999999999999999999999999999999999887776655544 3445556777766665 5544
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.0079 Score=71.11 Aligned_cols=121 Identities=16% Similarity=0.163 Sum_probs=76.4
Q ss_pred eEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC--CCceeEEe-----ccCCCCeEEEEECC---CCCEEEEEeC
Q 002591 617 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD--TLKSKTNL-----EEHSSLITDVRFSP---SMPRLATSSF 685 (903)
Q Consensus 617 ~~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~V~vWd~~--t~~~~~~l-----~~h~~~V~~l~fsp---dg~~Lasgs~ 685 (903)
..+++-.+.|-.+.|.. +...++ -.-|.+.|||++ .|+....+ ......+.-|.|.| +..++.++-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 34567788888888854 222333 233678999976 44433322 22334445556654 5667777788
Q ss_pred CCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCC
Q 002591 686 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 741 (903)
Q Consensus 686 Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~ 741 (903)
+++|++..+++. ....+.+|...++.++|...|-..+..-+-||+|..|-+..|
T Consensus 204 ~~~i~lL~~~ra--~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 204 GGEIRLLNINRA--LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred CCceeEeeechH--HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 999998887652 235566799999998887776555555556666666655443
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.05 E-value=4.3 Score=49.86 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=23.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 002591 665 SSLITDVRFSPSMPRLATSSFDKTVRVWDAD 695 (903)
Q Consensus 665 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~ 695 (903)
.-.|..|.++++|++|+..|..| |.|-.+.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP 113 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELP 113 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEec
Confidence 34688999999999999988766 5555553
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.39 Score=48.35 Aligned_cols=176 Identities=15% Similarity=0.122 Sum_probs=98.6
Q ss_pred CCCEEEEEeC--CCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCcee
Q 002591 676 SMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 753 (903)
Q Consensus 676 dg~~Lasgs~--Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~ 753 (903)
++.++.+.+. ...|++||+++ +..+....-....+..=-...-++++..-.-.||.-.++|.++.+++..+.-.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~-gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTT-GQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccC-ceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 3455655554 45699999997 44444333222222222222224555556667899999999999988877655555
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe----cC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce-
Q 002591 754 MRFQPHLGRYLAAAAENVVSILDAETQACRLSL----QG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC- 826 (903)
Q Consensus 754 v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l----~~-h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~- 826 (903)
-....++..++.+.....+..-|.++.....++ .+ .-..++.+.|- +|.+.|-.-.. .|...|..+++....
T Consensus 134 WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 134 WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred eeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 555566677777777778888887765433322 22 11223334443 35544444333 455555555422111
Q ss_pred --------EEEeecCCCceEEEEEeCCCCEEEEEE
Q 002591 827 --------VHELSCNGNKFHSCVFHPTYPSLLVIG 853 (903)
Q Consensus 827 --------i~~~~~~~~~i~si~~sp~g~~l~t~s 853 (903)
+.....+.+..+.+++.|....|+..+
T Consensus 213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 111223345677889998885555544
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.2 Score=61.41 Aligned_cols=142 Identities=11% Similarity=0.026 Sum_probs=92.7
Q ss_pred CeEEEEECCCCCEEEEE--eCCCcEEEEeCCCCCce----eE------EeccCCCceEEEEecCCCCeEEEEEeCCCcEE
Q 002591 667 LITDVRFSPSMPRLATS--SFDKTVRVWDADNPGYS----LR------TFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 734 (903)
Q Consensus 667 ~V~~l~fspdg~~Lasg--s~Dg~I~IWDl~~~~~~----~~------~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~ 734 (903)
.|..+...+|+...++. +.+-.|..||+++-... .+ +.......+.++.|.|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45566666776654443 34557889999752111 11 11122345667889987666667888899999
Q ss_pred EEEcCCCe-eeE--EeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecC----CCCCeEEEEEcCCCCEEEE
Q 002591 735 YWSINNGS-CTR--VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG----HTKPIDSVCWDPSGELLAS 807 (903)
Q Consensus 735 iwDi~t~~-~~~--~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~----h~~~V~sl~~spdg~~las 807 (903)
+..+.... .+. .+.....+++|+|.|..++++-..|++.-|...-. ....+.+ ....|.+|+|.....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 98776433 122 23346788999999999999999999988865432 2222221 1367999999987777765
Q ss_pred Ee
Q 002591 808 VS 809 (903)
Q Consensus 808 gs 809 (903)
.+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 43
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.72 Score=55.13 Aligned_cols=181 Identities=10% Similarity=0.056 Sum_probs=86.6
Q ss_pred CCCCEEEEEeCCC------cEEEEECCCCceeE--EeccCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCCc
Q 002591 633 SDGKLLATGGHDK------KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPGY 699 (903)
Q Consensus 633 pdg~~Latgs~Dg------~V~vWd~~t~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~I~IWDl~~~~~ 699 (903)
.++.+++.|+.++ .+..||..+.+-.. .+.........+.+ ++..++.|+.+ ..+.+||..+...
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3455667776542 57788876543321 11111222222322 56677778765 3477888876332
Q ss_pred eeEEecc--CCCceEEEEecCCCCeEEEEEeCC------CcEEEEEcCCCeeeEEeec--Cc-eeEEEecCCCEEEEEEc
Q 002591 700 SLRTFMG--HSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFKG--GT-AQMRFQPHLGRYLAAAA 768 (903)
Q Consensus 700 ~~~~~~~--h~~~V~sl~fsp~~~~ll~sgs~D------g~I~iwDi~t~~~~~~~~~--~~-~~v~~sp~~~~ll~~s~ 768 (903)
. .... +...-.+++.. ++.+++.|+.+ ..+..||+.+.+....-.. .. .......++..++.|+.
T Consensus 371 ~--~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 446 (534)
T PHA03098 371 R--EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGI 446 (534)
T ss_pred e--eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCc
Confidence 1 1111 11111122222 34566666632 4588899887764432211 11 11222334445555543
Q ss_pred C--------CeEEEEECCCCeEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCC
Q 002591 769 E--------NVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSG 821 (903)
Q Consensus 769 d--------g~I~i~D~~t~~~~~~--l~~h~~~V~sl~~spdg~~lasgs~d------~I~iwdl~s~ 821 (903)
+ ..+.+||..+.+-... +.........+.+ ++++++.|+.+ .|.+||..+.
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred cCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2 2388899887654322 1111111112222 56666666542 5777777653
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.97 Score=51.24 Aligned_cols=105 Identities=10% Similarity=0.033 Sum_probs=61.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCeEEEE-ECCCCC----Ccc-eEEEeecC----CCceEEEEEeCCCCEEEEEECC----
Q 002591 790 TKPIDSVCWDPSGELLASVSEDSVRVW-TVGSGS----EGE-CVHELSCN----GNKFHSCVFHPTYPSLLVIGCY---- 855 (903)
Q Consensus 790 ~~~V~sl~~spdg~~lasgs~d~I~iw-dl~s~~----~~~-~i~~~~~~----~~~i~si~~sp~g~~l~t~s~d---- 855 (903)
-...+.++|.++| +++ ++...|..| |..... ..+ .+..+... ......++|.|+|...++.+..
T Consensus 71 l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 71 LSMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK 148 (367)
T ss_pred CCCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence 3445788999888 544 444455544 443211 112 22223221 3447788999999866655521
Q ss_pred ---------------CeEEEEECCCCcEEEEccCCCCEEEEEEecCCCEEEEEecC
Q 002591 856 ---------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 896 (903)
Q Consensus 856 ---------------g~I~vwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~D 896 (903)
+.|.-+|..+++...+.........++|+++|+++++-..+
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 35666666666554444344556789999999988765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.87 E-value=1.6 Score=53.40 Aligned_cols=26 Identities=31% Similarity=0.279 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEE
Q 002591 624 SKVICCHFSSDGKLLATGGHDKKAVL 649 (903)
Q Consensus 624 ~~V~~l~fspdg~~Latgs~Dg~V~v 649 (903)
-.|..|.++++|++||..|..|.+.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 46889999999999999987664443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.80 E-value=9.3 Score=43.37 Aligned_cols=218 Identities=10% Similarity=0.032 Sum_probs=101.7
Q ss_pred CCCEEEEEe-CCCcEEEEeCCCCC---ceeEEecc---CC----CceEEEEecCCCCeEEEEE--eC----CCcEEEEEc
Q 002591 676 SMPRLATSS-FDKTVRVWDADNPG---YSLRTFMG---HS----ASVMSLDFHPNKDDLICSC--DG----DGEIRYWSI 738 (903)
Q Consensus 676 dg~~Lasgs-~Dg~I~IWDl~~~~---~~~~~~~~---h~----~~V~sl~fsp~~~~ll~sg--s~----Dg~I~iwDi 738 (903)
+.++|+..+ ..+.|+|+|+.+.- +..+++.. +. ..-..+...|+|+.+| ++ +. -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imI-S~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMI-SALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEE-EEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEE-EeccCCCCCCCCcEEEEcC
Confidence 455777777 57899999998532 22333331 10 1122233446665444 43 22 356888898
Q ss_pred CCCeeeEEeecC------ceeEEEecCCCEEEEEEc--------------------CCeEEEEECCCCeEEEEecCCCC-
Q 002591 739 NNGSCTRVFKGG------TAQMRFQPHLGRYLAAAA--------------------ENVVSILDAETQACRLSLQGHTK- 791 (903)
Q Consensus 739 ~t~~~~~~~~~~------~~~v~~sp~~~~ll~~s~--------------------dg~I~i~D~~t~~~~~~l~~h~~- 791 (903)
++.+.+..++.. ...+-|.|..+.++++.. ...+.+||+.+.+.+.++.--..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 888877776542 234667888787777542 35899999999999998875432
Q ss_pred -CeEEEEEcCC--CCEEEEEe-CC-eEEEEECCCCCCcc--eEEEeecC-----------------CCceEEEEEeCCCC
Q 002591 792 -PIDSVCWDPS--GELLASVS-ED-SVRVWTVGSGSEGE--CVHELSCN-----------------GNKFHSCVFHPTYP 847 (903)
Q Consensus 792 -~V~sl~~spd--g~~lasgs-~d-~I~iwdl~s~~~~~--~i~~~~~~-----------------~~~i~si~~sp~g~ 847 (903)
....|.|..+ ..+=++++ -. +|..|--....... .+..+... ..-|+.|..+.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 3456666554 44333333 33 55544432221111 11111110 23478999999999
Q ss_pred EEEEEEC-CCeEEEEECCCCcE---E-E-Ecc---------------CCCCEEEEEEecCCCEEEEEe
Q 002591 848 SLLVIGC-YQSLELWNMSENKT---M-T-LTA---------------HEGLIAALAVSTETGYVASAS 894 (903)
Q Consensus 848 ~l~t~s~-dg~I~vwdl~~~~~---~-~-~~~---------------h~~~V~sl~~spdg~~LaSgs 894 (903)
+|++.+. .|.|+.||+..-.. + . ..+ -.+...-|..|-||+.|+..+
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9998876 68999999986432 2 1 111 112335677888888776554
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.75 E-value=1.1 Score=50.75 Aligned_cols=141 Identities=11% Similarity=0.098 Sum_probs=94.4
Q ss_pred CCCEEE-EEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCC-------eEEEEEeCCCcEEEEEcCCCe-eeE-
Q 002591 676 SMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-------DLICSCDGDGEIRYWSINNGS-CTR- 745 (903)
Q Consensus 676 dg~~La-sgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~-------~ll~sgs~Dg~I~iwDi~t~~-~~~- 745 (903)
+..+|+ .|+....++-.|++. ++.+..+.-|... -+.|.|... .-| .|-.+..|.-.|.+-.. .+.
T Consensus 478 dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeeccc-ceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence 344443 444556677778876 7888888877765 366776532 123 45557777777776432 222
Q ss_pred -EeecCceeEEE----ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCC
Q 002591 746 -VFKGGTAQMRF----QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 820 (903)
Q Consensus 746 -~~~~~~~~v~~----sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s 820 (903)
.++.-...-.| ....+++++++..|.|++||--.-.....+.+-...|..|..+.+|++|++.|...+.+-|++-
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEeccc
Confidence 22222222222 3345899999999999999976555555666777889999999999999998888888888753
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.72 E-value=4.9 Score=42.92 Aligned_cols=145 Identities=13% Similarity=0.084 Sum_probs=87.4
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEe-CCCCCceeE
Q 002591 625 KVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD-ADNPGYSLR 702 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs-~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD-l~~~~~~~~ 702 (903)
.+.+.++++++..+|... .++.-.||-...+.....+. ....++.-.|++++...+....+...+++. ..+......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 789999999999777655 23333333333333333322 223788899999988777777677777774 222222222
Q ss_pred Eecc--CCCceEEEEecCCCCeEEEEEe--CCCcEEEEEcCC---C--e----eeEEe---ecCceeEEEecCCCEEEEE
Q 002591 703 TFMG--HSASVMSLDFHPNKDDLICSCD--GDGEIRYWSINN---G--S----CTRVF---KGGTAQMRFQPHLGRYLAA 766 (903)
Q Consensus 703 ~~~~--h~~~V~sl~fsp~~~~ll~sgs--~Dg~I~iwDi~t---~--~----~~~~~---~~~~~~v~~sp~~~~ll~~ 766 (903)
.+.. ....|..+.++|||.++++... .++.|.+--+.. + . .+... ...+..+.|..++..++.+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 2221 1128999999999999876663 356777665532 2 0 11111 1345678899988777666
Q ss_pred EcCC
Q 002591 767 AAEN 770 (903)
Q Consensus 767 s~dg 770 (903)
...+
T Consensus 184 ~~~~ 187 (253)
T PF10647_consen 184 RSAG 187 (253)
T ss_pred CCCC
Confidence 5543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.66 Score=55.27 Aligned_cols=125 Identities=13% Similarity=0.167 Sum_probs=84.4
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCCeEEEEE--CCCCCEEEEEeCCCc
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRF--SPSMPRLATSSFDKT 688 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~-~h~~~V~~l~f--spdg~~Lasgs~Dg~ 688 (903)
.|....+++..-..+.-+.-+.-++..++-+....+.|||...+.....-. ...+.|.+++| .|++..+++.+....
T Consensus 18 ~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 18 EWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH 97 (631)
T ss_pred EEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE
Confidence 556666777666677777777766655555555679999998776544433 45788999999 468889999999999
Q ss_pred EEEEeCC-----CCC---ceeEE--eccCC-CceEEEEecCCCCeEEEEEeCCCcEEEEEcC
Q 002591 689 VRVWDAD-----NPG---YSLRT--FMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 739 (903)
Q Consensus 689 I~IWDl~-----~~~---~~~~~--~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~ 739 (903)
|.+|.-. +.+ ..++. +..|+ .+|.+..|.++|. ++ +|+ ++.+.|+|-.
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFDKW 156 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEECCC
Confidence 9998442 111 12222 22344 5789999999874 33 333 4678888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=7.7 Score=43.32 Aligned_cols=147 Identities=11% Similarity=0.081 Sum_probs=83.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEE-eccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002591 665 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 743 (903)
Q Consensus 665 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~ 743 (903)
...+.++.+.+++.+++++. .|.+.. ..+..+..... ...-...++++.+.+++. ++++ +..|.+++=....+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEE-ecCCEEEEccCCCCCc
Confidence 45789999999987666554 554432 22222222222 223456788999998866 4434 4467665433444432
Q ss_pred eEEee-------cCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe---cCCCCCeEEEEEcCCCCEEEEEeCCeE
Q 002591 744 TRVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWDPSGELLASVSEDSV 813 (903)
Q Consensus 744 ~~~~~-------~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l---~~h~~~V~sl~~spdg~~lasgs~d~I 813 (903)
-.... .....+.+.+++. +++++.+|.|.. ....++.-... ..-...+..+.|..+++.+++|..+.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 22111 1244566777544 566666775553 33333322222 222345778888888888888887777
Q ss_pred EEEE
Q 002591 814 RVWT 817 (903)
Q Consensus 814 ~iwd 817 (903)
..|+
T Consensus 326 l~~~ 329 (334)
T PRK13684 326 LRYV 329 (334)
T ss_pred EEec
Confidence 6665
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=94.69 E-value=12 Score=44.03 Aligned_cols=171 Identities=8% Similarity=-0.002 Sum_probs=81.7
Q ss_pred CeEEEEEeCC-------CcEEEEEcCCCeeeEEee-c--C---ceeE-EEecCCCEEEEEEcC-----CeEEEEECCCCe
Q 002591 721 DDLICSCDGD-------GEIRYWSINNGSCTRVFK-G--G---TAQM-RFQPHLGRYLAAAAE-----NVVSILDAETQA 781 (903)
Q Consensus 721 ~~ll~sgs~D-------g~I~iwDi~t~~~~~~~~-~--~---~~~v-~~sp~~~~ll~~s~d-----g~I~i~D~~t~~ 781 (903)
+.+++.|+.+ ..+.+||+++.+....-. + + .... .....+..++.++.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4566666643 247788888765432111 0 0 0111 122333445555543 468889998765
Q ss_pred EEEEecC----CCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEE---eecCCCceEEEEEeCCCCE
Q 002591 782 CRLSLQG----HTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHE---LSCNGNKFHSCVFHPTYPS 848 (903)
Q Consensus 782 ~~~~l~~----h~~~V~sl~~spdg~~lasgs~d------~I~iwdl~s~~~~~~i~~---~~~~~~~i~si~~sp~g~~ 848 (903)
-...-.. ....-.+++. -++++++.|+.+ .+.+||+.+..- ..+.. ....... ..++. -+++.
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~R~~-~~~~~-~~gki 331 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW-FHCSTPGDSFSIRGG-AGLEV-VQGKV 331 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE-EeCCCCCCCCCCCCC-cEEEE-ECCcE
Confidence 4332111 1111122222 245555555532 467788765421 11110 0000111 12222 25666
Q ss_pred EEEEECC----CeEEEEECCCCcEEEEccC-----CCCEEEEEEecCCCEEEEEecC
Q 002591 849 LLVIGCY----QSLELWNMSENKTMTLTAH-----EGLIAALAVSTETGYVASASHD 896 (903)
Q Consensus 849 l~t~s~d----g~I~vwdl~~~~~~~~~~h-----~~~V~sl~~spdg~~LaSgs~D 896 (903)
+++++.+ ..|.+||+.+.+...+... .....++ ..-++++++.|+.+
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~ 387 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEI 387 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCcc
Confidence 6777655 4689999998876644322 1111222 23356777777753
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.54 E-value=2.9 Score=42.82 Aligned_cols=49 Identities=10% Similarity=0.038 Sum_probs=36.5
Q ss_pred CEEEEEeCCCcEEEEECC--CCceeEEeccCCCCeEEEEECCCCCEEEEEeC
Q 002591 636 KLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 685 (903)
Q Consensus 636 ~~Latgs~Dg~V~vWd~~--t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~ 685 (903)
+.|+.+...++|.+|++. ......+|..- +.|..+.++..|+||+|-=.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence 355444566789999987 44555666544 78999999999999999743
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=94.45 E-value=3.2 Score=45.22 Aligned_cols=186 Identities=12% Similarity=0.128 Sum_probs=101.6
Q ss_pred cEEEEeCCCCCceeEEecc------CCCceEEEEecCCC-----CeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEE
Q 002591 688 TVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNK-----DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 756 (903)
Q Consensus 688 ~I~IWDl~~~~~~~~~~~~------h~~~V~sl~fsp~~-----~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~ 756 (903)
+|.+||+.+ .+.++++.- ..+.+..+.+.... .+.+++=...+.|.|+|+.+++..+...... ..
T Consensus 35 KLv~~Dl~t-~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~---~~ 110 (287)
T PF03022_consen 35 KLVAFDLKT-NQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSF---SP 110 (287)
T ss_dssp EEEEEETTT-TCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGC---TT
T ss_pred EEEEEECCC-CcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCc---ce
Confidence 477788887 445555442 24567777776532 2334454555789999999999877765411 11
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcC---CCCEEEEEeCCeEEEEECCCC-----CC-----
Q 002591 757 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP---SGELLASVSEDSVRVWTVGSG-----SE----- 823 (903)
Q Consensus 757 sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~sp---dg~~lasgs~d~I~iwdl~s~-----~~----- 823 (903)
.|....+.. +|... ... ..+..++.+| ++++|+-......++|.+.+. ..
T Consensus 111 ~p~~~~~~i---~g~~~-----------~~~---dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~ 173 (287)
T PF03022_consen 111 DPDAGPFTI---GGESF-----------QWP---DGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQA 173 (287)
T ss_dssp S-SSEEEEE---TTEEE-----------EET---TSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-
T ss_pred eccccceec---cCceE-----------ecC---CCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCcccccccc
Confidence 111111111 11111 111 2277777766 777777776554455554332 11
Q ss_pred -cceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCC----cE-E-EEccC-CCCEEEEEEec--CCCEEEEE
Q 002591 824 -GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN----KT-M-TLTAH-EGLIAALAVST--ETGYVASA 893 (903)
Q Consensus 824 -~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~----~~-~-~~~~h-~~~V~sl~~sp--dg~~LaSg 893 (903)
...+..+.........++++++|..+++--..+.|..|+..+. .. + ..... -..+.++.+.+ +|.+.+.+
T Consensus 174 ~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 174 LASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 1122333222345667889999988888888899999999871 22 2 22222 35788999998 77765554
Q ss_pred e
Q 002591 894 S 894 (903)
Q Consensus 894 s 894 (903)
.
T Consensus 254 n 254 (287)
T PF03022_consen 254 N 254 (287)
T ss_dssp -
T ss_pred C
Confidence 3
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.12 Score=39.47 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK 656 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~ 656 (903)
...|.+++|+|..++||.|..+|.|.||.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 444
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=94.24 E-value=12 Score=42.32 Aligned_cols=186 Identities=11% Similarity=0.027 Sum_probs=96.8
Q ss_pred EEEEEeCCCcEEEEeCCCCCceeEEeccC--CCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCce-eE-
Q 002591 679 RLATSSFDKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA-QM- 754 (903)
Q Consensus 679 ~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h--~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~-~v- 754 (903)
.++++..||.|.-.|.++ +..+.....- ...+.+-.+..+|+ |+.++.+|.++.+|.++++.+..++.... .+
T Consensus 70 ~v~~~~~~G~i~A~d~~~-g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 70 TVYVGTRDGNIFALNPDT-GLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred eEEEecCCCcEEEEeCCC-CcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 555557788888888887 3333222111 12222222333444 44788899999999988988877765551 11
Q ss_pred -EEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCC---CeEEEEEcCCCCEEEEEeC--C-eEEEEECCCCCCcceE
Q 002591 755 -RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK---PIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGECV 827 (903)
Q Consensus 755 -~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~---~V~sl~~spdg~~lasgs~--d-~I~iwdl~s~~~~~~i 827 (903)
.....+..++..+.++.+...|..+++.+........ .+..--...++ .++.+.. + .+.-+|..++......
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeeee
Confidence 1122234555555789999999999988776543221 11111111122 3333333 3 4556666555322111
Q ss_pred EEeec-CCCce--E-EE---EEeCCCCEEEEEECCCeEEEEECCCCcEE
Q 002591 828 HELSC-NGNKF--H-SC---VFHPTYPSLLVIGCYQSLELWNMSENKTM 869 (903)
Q Consensus 828 ~~~~~-~~~~i--~-si---~~sp~g~~l~t~s~dg~I~vwdl~~~~~~ 869 (903)
+.... ....+ . .+ ...-+ ..++.++.++.+..+|..+++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 226 KVSQTIGRTAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeecccCcccccccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceE
Confidence 10000 00000 0 00 01111 22466777788888899988887
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.12 E-value=10 Score=40.96 Aligned_cols=196 Identities=15% Similarity=0.140 Sum_probs=111.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECC-------CCceeEEecc-----CCCCeEEEEECCCCC------------EE
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNLEE-----HSSLITDVRFSPSMP------------RL 680 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs~Dg~V~vWd~~-------t~~~~~~l~~-----h~~~V~~l~fspdg~------------~L 680 (903)
.-+.|+|+|.+.+-++....++..+||.. ....+.++.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999999888887788899999986 1123444442 234678888875332 36
Q ss_pred EEEeCCCcEEEEeCCCCCc----eeEEec-cCCCceE-EEEecCC--CCeEEEEEeCCCcEEEEEcCCCeee--EEeecC
Q 002591 681 ATSSFDKTVRVWDADNPGY----SLRTFM-GHSASVM-SLDFHPN--KDDLICSCDGDGEIRYWSINNGSCT--RVFKGG 750 (903)
Q Consensus 681 asgs~Dg~I~IWDl~~~~~----~~~~~~-~h~~~V~-sl~fsp~--~~~ll~sgs~Dg~I~iwDi~t~~~~--~~~~~~ 750 (903)
+.+++||+|.-|.-.-... ....+. .....|+ .+++... +..|.++--..++|.+||-.-.+.. ..|..+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 8889999999998532111 122222 1123333 4555433 4556656566899999985533221 112111
Q ss_pred cee----------------EEE---ecCCCEEEEEEcCCeEEEEECCCCeEEEEec--CCCCCeEEEEEcC------CCC
Q 002591 751 TAQ----------------MRF---QPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDP------SGE 803 (903)
Q Consensus 751 ~~~----------------v~~---sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~--~h~~~V~sl~~sp------dg~ 803 (903)
... +.| .+....-+.+..-|.|.+||.. +..++++. +.-..-+.|+..| .+.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 111 111 1111222223334689999876 45555553 1222334566544 466
Q ss_pred EEEEEeCC-eEEEEECCCC
Q 002591 804 LLASVSED-SVRVWTVGSG 821 (903)
Q Consensus 804 ~lasgs~d-~I~iwdl~s~ 821 (903)
+|+.--.| +|..||..++
T Consensus 263 lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred eEEeecCCceeEEecCCCC
Confidence 77765556 9999999877
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=93.84 E-value=4.6 Score=44.73 Aligned_cols=100 Identities=10% Similarity=0.082 Sum_probs=49.2
Q ss_pred CeEEEEEeCC-----CcEEEEEcCCCeee---EEee---cCce-eEEEecCCCEEEEEEc-----CCeEEEEECCCCeEE
Q 002591 721 DDLICSCDGD-----GEIRYWSINNGSCT---RVFK---GGTA-QMRFQPHLGRYLAAAA-----ENVVSILDAETQACR 783 (903)
Q Consensus 721 ~~ll~sgs~D-----g~I~iwDi~t~~~~---~~~~---~~~~-~v~~sp~~~~ll~~s~-----dg~I~i~D~~t~~~~ 783 (903)
+.+++.|+.+ ..+..||+.+.+.. ..+. .... ..+...++..++.++. ...+..||+.+.+-.
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 4466667654 35677787766531 1111 1111 1122234445555553 246888998876433
Q ss_pred E--EecCCCCCeEEEEEcCCCCEEEEEeCC-----eEEEEECCCC
Q 002591 784 L--SLQGHTKPIDSVCWDPSGELLASVSED-----SVRVWTVGSG 821 (903)
Q Consensus 784 ~--~l~~h~~~V~sl~~spdg~~lasgs~d-----~I~iwdl~s~ 821 (903)
. .+... ......+..-++++++.|+.+ .+.+||..+.
T Consensus 153 ~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 153 ELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2 12111 111222223346666666643 3568888764
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.57 E-value=8 Score=46.26 Aligned_cols=190 Identities=13% Similarity=0.077 Sum_probs=91.6
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCcee
Q 002591 623 TSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 701 (903)
Q Consensus 623 ~~~V~~l~fspdg~-~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~ 701 (903)
.+...+|..+|... -++ +.--.|+||++ +|..+..+.-....+..+.|+.+. .|++...||+++||++.. ..+
T Consensus 43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g--e~i 116 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG--EFI 116 (829)
T ss_pred cCCceEEEeccccccccc--ccceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch--hhh
Confidence 34455555555321 111 23345888886 466666655555588999999765 666778899999999974 222
Q ss_pred EEe----ccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-C---ceeEEEe---cCC-CEEEEEEc-
Q 002591 702 RTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-G---TAQMRFQ---PHL-GRYLAAAA- 768 (903)
Q Consensus 702 ~~~----~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~-~---~~~v~~s---p~~-~~ll~~s~- 768 (903)
..+ ......|..+.|..+| ++ .-..+|.|.+-+-.....++.++. + ....+|. +.. ..++..-.
T Consensus 117 e~~svg~e~~~~~I~ec~~f~~G--Va-vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~ 193 (829)
T KOG2280|consen 117 ESNSVGFESQMSDIVECRFFHNG--VA-VLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV 193 (829)
T ss_pred cccccccccccCceeEEEEecCc--eE-EEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeech
Confidence 221 1122335545554444 32 223345554433222222222221 1 1112222 111 11111111
Q ss_pred CCeEEEEECCCC-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002591 769 ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 821 (903)
Q Consensus 769 dg~I~i~D~~t~-~~~~~l~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~ 821 (903)
.-...++-..+. .....+......+.-+..+|+..+|+--... .|.+-++...
T Consensus 194 ~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 194 AVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred hhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 000111111111 1111122223567778899999988887766 7777766543
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=93.51 E-value=20 Score=42.41 Aligned_cols=245 Identities=14% Similarity=0.131 Sum_probs=119.9
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCc--eeEEeccC-CCCeEEEEECCCC-CEEEEEeC--CCcEEEEeCCCCCceeEEec
Q 002591 632 SSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEH-SSLITDVRFSPSM-PRLATSSF--DKTVRVWDADNPGYSLRTFM 705 (903)
Q Consensus 632 spdg~~Latgs~Dg~V~vWd~~t~~--~~~~l~~h-~~~V~~l~fspdg-~~Lasgs~--Dg~I~IWDl~~~~~~~~~~~ 705 (903)
..++..++.+..+|.+....+.... .....-+. ....+++++..++ .+|+.|+. |+.+.-|.... -..+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~-l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSN-LEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESES-EEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCC-cEEEEecc
Confidence 4567789999999999888776422 11222222 5556777776665 47777776 44455555322 23333444
Q ss_pred cCCCceEEEEecCC---CC-------eEEEEEe--CCCcEEEEEcCCCee---eEEeec-CceeEEEecC---CCEEEEE
Q 002591 706 GHSASVMSLDFHPN---KD-------DLICSCD--GDGEIRYWSINNGSC---TRVFKG-GTAQMRFQPH---LGRYLAA 766 (903)
Q Consensus 706 ~h~~~V~sl~fsp~---~~-------~ll~sgs--~Dg~I~iwDi~t~~~---~~~~~~-~~~~v~~sp~---~~~ll~~ 766 (903)
.-++|.++++... +. .++++++ .+|.+++..-.-+-. ...... ++..+-..+. ...+++.
T Consensus 298 -N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 298 -NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEE
T ss_pred -CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEE
Confidence 4577888888532 12 4554443 467888874321111 111111 1222221111 1334444
Q ss_pred EcCCeEEEEECC---CCeEEEEec--CC---CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeec-CCCce
Q 002591 767 AAENVVSILDAE---TQACRLSLQ--GH---TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC-NGNKF 837 (903)
Q Consensus 767 s~dg~I~i~D~~---t~~~~~~l~--~h---~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~-~~~~i 837 (903)
+....-+++.+. ..+.+..+. +. ...+.+..+. +.+++=.+...|++.+.... .....+.. .+..|
T Consensus 377 S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~I 451 (504)
T PF10433_consen 377 SFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSII 451 (504)
T ss_dssp EESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS---
T ss_pred EcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCeE
Confidence 444444455442 333332221 11 1223333333 56777777778999987654 33333322 23444
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEc-----cCCCCEEEEEEec
Q 002591 838 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-----AHEGLIAALAVST 885 (903)
Q Consensus 838 ~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~-----~h~~~V~sl~~sp 885 (903)
.+++. ++.+++++..++.+.++.+...... ... .....|.|+...|
T Consensus 452 ~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 452 VAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 44444 3467888888999999998877765 211 2567888888765
|
... |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.026 Score=62.98 Aligned_cols=139 Identities=12% Similarity=0.196 Sum_probs=100.8
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe
Q 002591 668 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 747 (903)
Q Consensus 668 V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~ 747 (903)
-....|.+.+..++.++.+..|..||-.. ..+... ..++....++|..+++.+++.+-..+.+.+||+.+...-..-
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~ag--q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAG--QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhc--ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 34456777777799999899999998763 222222 245566779999888888888888999999999865322111
Q ss_pred ecC---ceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 002591 748 KGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 809 (903)
Q Consensus 748 ~~~---~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs 809 (903)
.++ ..-..|++....++.+...+.+.|+...+.+.+.....|...+++++|.+.+..+...+
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dc 178 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDC 178 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCc
Confidence 111 12256888888888888899999999988877776666999999999999765544433
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=93.41 E-value=8.6 Score=42.87 Aligned_cols=77 Identities=8% Similarity=0.029 Sum_probs=42.8
Q ss_pred EEEEecCCCCCeEEEEEcC-------CCCEEEEEeCC-eEEEEECCCCCCcceEEEe-ecCCCceEEEEEeCCCCEEEEE
Q 002591 782 CRLSLQGHTKPIDSVCWDP-------SGELLASVSED-SVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSLLVI 852 (903)
Q Consensus 782 ~~~~l~~h~~~V~sl~~sp-------dg~~lasgs~d-~I~iwdl~s~~~~~~i~~~-~~~~~~i~si~~sp~g~~l~t~ 852 (903)
++..+..| ..+..+.|.. .|.+|++.-.. .|...++...........+ ......+..+++.|||..+++.
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD 323 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE
Confidence 33444434 4555666653 34566665555 7777777644222222222 2334478999999999877777
Q ss_pred ECCCeEE
Q 002591 853 GCYQSLE 859 (903)
Q Consensus 853 s~dg~I~ 859 (903)
..+|.|+
T Consensus 324 d~~G~iy 330 (331)
T PF07995_consen 324 DSDGKIY 330 (331)
T ss_dssp -TTTTEE
T ss_pred CCCCeEe
Confidence 7777764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.40 E-value=14 Score=41.01 Aligned_cols=141 Identities=12% Similarity=0.227 Sum_probs=80.4
Q ss_pred CceEEEEecCCCCeEEEEEeCCCc------EEEEEcCCC----eee---EE--ee-----------cCceeEEEecCCCE
Q 002591 709 ASVMSLDFHPNKDDLICSCDGDGE------IRYWSINNG----SCT---RV--FK-----------GGTAQMRFQPHLGR 762 (903)
Q Consensus 709 ~~V~sl~fsp~~~~ll~sgs~Dg~------I~iwDi~t~----~~~---~~--~~-----------~~~~~v~~sp~~~~ 762 (903)
+.+..|.+.+++..++ +.+++|. +..+++... ..+ .. +. .....+++.+++..
T Consensus 20 GGlSgl~~~~~~~~~~-avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFY-AVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEE-EEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 4566788876555554 4555666 555554431 000 00 10 13345777566556
Q ss_pred EEEEEcC------CeEEEEECCCCeEEEEec---------------CCCCCeEEEEEcCCCCEEEEEeCC--------e-
Q 002591 763 YLAAAAE------NVVSILDAETQACRLSLQ---------------GHTKPIDSVCWDPSGELLASVSED--------S- 812 (903)
Q Consensus 763 ll~~s~d------g~I~i~D~~t~~~~~~l~---------------~h~~~V~sl~~spdg~~lasgs~d--------~- 812 (903)
+++.-.+ ..|+.+|.. ++.+..+. .....+.+++++|+|+.|+++.+. .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 6555556 688888876 55544331 133468899999999965554321 1
Q ss_pred ------EEEEECCCCC----CcceEEEeec-----CCCceEEEEEeCCCCEEEE
Q 002591 813 ------VRVWTVGSGS----EGECVHELSC-----NGNKFHSCVFHPTYPSLLV 851 (903)
Q Consensus 813 ------I~iwdl~s~~----~~~~i~~~~~-----~~~~i~si~~sp~g~~l~t 851 (903)
++|+.+.... .......+.. ....+..+.+-+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 5555554322 1222333332 4677899999999986654
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.052 Score=64.56 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=76.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEE-----------ECCCCCEEEEEeCCCcEEEEe
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR-----------FSPSMPRLATSSFDKTVRVWD 693 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~-----------fspdg~~Lasgs~Dg~I~IWD 693 (903)
.|.-+-|-++.-++..+-.+++|+|..+++... ..+++|...+++++ .+|||+.|+.++.||.++.|-
T Consensus 185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred eeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 344444455667888888899999887764332 45566877776655 488999999999999999887
Q ss_pred CCCCC----ceeEEeccCC-CceEEEEecCCC---------CeEEEEEeCCCcEEEEEcCCCeee
Q 002591 694 ADNPG----YSLRTFMGHS-ASVMSLDFHPNK---------DDLICSCDGDGEIRYWSINNGSCT 744 (903)
Q Consensus 694 l~~~~----~~~~~~~~h~-~~V~sl~fsp~~---------~~ll~sgs~Dg~I~iwDi~t~~~~ 744 (903)
+.-.+ .|+..++.|+ .+-.|.-|+... ..+|-+...+..+++|.....+|.
T Consensus 264 iyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 264 IYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 64322 3455566666 222222233221 112333444677999988777776
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.27 E-value=23 Score=42.26 Aligned_cols=198 Identities=12% Similarity=0.077 Sum_probs=107.3
Q ss_pred CeEEEEECCCCCEEEEEeC-----CCcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCc----EEEEE
Q 002591 667 LITDVRFSPSMPRLATSSF-----DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE----IRYWS 737 (903)
Q Consensus 667 ~V~~l~fspdg~~Lasgs~-----Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~----I~iwD 737 (903)
.+-.++.+||.+++|-+-. .-++++.|+.++......+. +...+++|..++..++++-..++. |....
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 3566788899988876532 34688999988544333333 345669999999989888776652 33333
Q ss_pred cCC--CeeeEEeecC--c--eeEEEecCCCEEEEEEcC---CeEEEEECCCCeEE--EEecCCCCCeEEEEEcCCCCEEE
Q 002591 738 INN--GSCTRVFKGG--T--AQMRFQPHLGRYLAAAAE---NVVSILDAETQACR--LSLQGHTKPIDSVCWDPSGELLA 806 (903)
Q Consensus 738 i~t--~~~~~~~~~~--~--~~v~~sp~~~~ll~~s~d---g~I~i~D~~t~~~~--~~l~~h~~~V~sl~~spdg~~la 806 (903)
+.+ ..-..+++.. . ..+.-+....+|+....+ ..+++.+....... .......+--..+ ...+.+++
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~--eh~~d~f~ 284 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSV--EHGGDRFY 284 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEee--eecCcEEE
Confidence 333 2222233322 1 223334445566665533 47778877665322 1111111111111 12244333
Q ss_pred EEeC--C-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCC---eEEEEECCCCcEE
Q 002591 807 SVSE--D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTM 869 (903)
Q Consensus 807 sgs~--d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg---~I~vwdl~~~~~~ 869 (903)
.-+. + ..+|+..........-..+..|...+.--.|+--.++|+....++ .|++++..++...
T Consensus 285 i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 285 ILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred EEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 3322 2 455555443111223334455566666666666777788776654 7889998877655
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.14 E-value=6.3 Score=47.08 Aligned_cols=174 Identities=14% Similarity=0.231 Sum_probs=87.3
Q ss_pred CcEEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeE------EeecCceeEEEecCC
Q 002591 687 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR------VFKGGTAQMRFQPHL 760 (903)
Q Consensus 687 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~------~~~~~~~~v~~sp~~ 760 (903)
-.|+||++. +..+..+.-....+..+.|+.+. .+| +...||++++|++-...... .....+..+.+.. +
T Consensus 64 ~~I~If~~s--G~lL~~~~w~~~~lI~mgWs~~e-eLI-~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-~ 138 (829)
T KOG2280|consen 64 PYIRIFNIS--GQLLGRILWKHGELIGMGWSDDE-ELI-CVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-N 138 (829)
T ss_pred eeEEEEecc--ccchHHHHhcCCCeeeecccCCc-eEE-EEeccceEEEeecchhhhcccccccccccCceeEEEEec-C
Confidence 347888876 44444444333478889999764 355 67789999999986432221 1111233333333 3
Q ss_pred CEEEEEEcCCeEE-EEECCCCeEEEEecC-CCCCeEEEEEc---CCCC--EEEEEeCC-eEEEEECCCCCCcceEEEeec
Q 002591 761 GRYLAAAAENVVS-ILDAETQACRLSLQG-HTKPIDSVCWD---PSGE--LLASVSED-SVRVWTVGSGSEGECVHELSC 832 (903)
Q Consensus 761 ~~ll~~s~dg~I~-i~D~~t~~~~~~l~~-h~~~V~sl~~s---pdg~--~lasgs~d-~I~iwdl~s~~~~~~i~~~~~ 832 (903)
+..+ -..+|.|. +.+..+. .+.++.. ......+.||. |... .++-.... ...++-..... .....+..
T Consensus 139 GVav-lt~~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~--~q~~~~~~ 214 (829)
T KOG2280|consen 139 GVAV-LTVSGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR--VQLHALSW 214 (829)
T ss_pred ceEE-EecCCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccc--ccccccCC
Confidence 3333 33344444 3343332 2222221 11111112232 2111 11111100 11112111110 11122222
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE
Q 002591 833 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 869 (903)
Q Consensus 833 ~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~ 869 (903)
....+..|..+|+.++|+.-...|.|.+-+++..++.
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 2456888999999999999999999999988776655
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=93.14 E-value=21 Score=42.92 Aligned_cols=152 Identities=13% Similarity=0.177 Sum_probs=80.3
Q ss_pred eecCceeEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEecC-CCCCeEEEEEcC------CCCEEEEEeC---C--e
Q 002591 747 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQG-HTKPIDSVCWDP------SGELLASVSE---D--S 812 (903)
Q Consensus 747 ~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~--~~~~l~~-h~~~V~sl~~sp------dg~~lasgs~---d--~ 812 (903)
++..+..+.+..++..+++....|.|.+||...+. .+..+.. +...|.--+|-+ ...++++.+. + .
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 45667778899999999999999999999993322 1112221 222111112222 2234444333 2 7
Q ss_pred EEEEECCCCCCcceEEEee---cCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE---EEc---cCC-CCEEEEE
Q 002591 813 VRVWTVGSGSEGECVHELS---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLT---AHE-GLIAALA 882 (903)
Q Consensus 813 I~iwdl~s~~~~~~i~~~~---~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~---~~~---~h~-~~V~sl~ 882 (903)
++++.+... ...+.++. .+......+.|+-....|+.- .++.|.+|++...+.. .+. ... ..+.++.
T Consensus 208 ykL~~l~~~--~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNE--SSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccC--CcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 888988221 12222222 223333444444434444444 7789999999877654 222 111 2344444
Q ss_pred EecCCCEEEEEecCCcEEEcC
Q 002591 883 VSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 883 ~spdg~~LaSgs~DG~I~IWd 903 (903)
--...+.|++. +..|++.|
T Consensus 285 ~~s~nRvLLs~--~nkIyLld 303 (670)
T PF10395_consen 285 PPSPNRVLLSV--NNKIYLLD 303 (670)
T ss_pred cCCCCeEEEEc--CCEEEEEe
Confidence 32234444443 55677654
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=92.85 E-value=13 Score=41.59 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=23.4
Q ss_pred eEEEEECCCCcEEEEccCCCC-EEEEEEecCCCEEEEEecCC
Q 002591 857 SLELWNMSENKTMTLTAHEGL-IAALAVSTETGYVASASHDK 897 (903)
Q Consensus 857 ~I~vwdl~~~~~~~~~~h~~~-V~sl~~spdg~~LaSgs~DG 897 (903)
.+.+||..+.+...+...... -...++.-++++++.|+.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 577899887765433322221 12223345788888887653
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.79 E-value=3.8 Score=42.02 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=39.7
Q ss_pred EecCC-CEEEEEEcCCeEEEEECC--CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002591 756 FQPHL-GRYLAAAAENVVSILDAE--TQACRLSLQGHTKPIDSVCWDPSGELLASVSED 811 (903)
Q Consensus 756 ~sp~~-~~ll~~s~dg~I~i~D~~--t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d 811 (903)
+...+ +.++++.....|.+|++. ....+..|.. -+.|..+.++..|+||++--.+
T Consensus 23 ~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 23 VCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred eeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEee
Confidence 33334 556666778889999988 3355566653 4788999999999999987543
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=92.79 E-value=10 Score=44.51 Aligned_cols=148 Identities=6% Similarity=-0.061 Sum_probs=72.3
Q ss_pred CCeEEEEEeCC-----CcEEEEEcCCCeeeEEeec-----Cc-eeEEEecCCCEEEEEEcC-----CeEEEEECCCCeEE
Q 002591 720 KDDLICSCDGD-----GEIRYWSINNGSCTRVFKG-----GT-AQMRFQPHLGRYLAAAAE-----NVVSILDAETQACR 783 (903)
Q Consensus 720 ~~~ll~sgs~D-----g~I~iwDi~t~~~~~~~~~-----~~-~~v~~sp~~~~ll~~s~d-----g~I~i~D~~t~~~~ 783 (903)
++.+++.|+.+ ..+.+||+.+.+....... .. ........+..++.++.+ ..+..||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 34566677654 3588899988765432211 11 111222334455555543 35778888776533
Q ss_pred EEec-----CCCCCeEEEEEcCCCCEEEEEeC-----CeEEEEECCCCCCcceEEEee--cCCCceEEEEEeCCCCEEEE
Q 002591 784 LSLQ-----GHTKPIDSVCWDPSGELLASVSE-----DSVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSLLV 851 (903)
Q Consensus 784 ~~l~-----~h~~~V~sl~~spdg~~lasgs~-----d~I~iwdl~s~~~~~~i~~~~--~~~~~i~si~~sp~g~~l~t 851 (903)
..-. ..... ..++. -++++++.++. +.+.+||+.+..- ..+.... .......+++ .-+++.++.
T Consensus 308 ~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W-~~~~~~g~~P~~R~~~~~~-~~~~~iyv~ 383 (470)
T PLN02193 308 HCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKW-TQVETFGVRPSERSVFASA-AVGKHIVIF 383 (470)
T ss_pred eCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCEE-EEeccCCCCCCCcceeEEE-EECCEEEEE
Confidence 2110 01111 12222 24666655542 2588999876521 1111110 0011122222 235566666
Q ss_pred EECC--------------CeEEEEECCCCcEEEE
Q 002591 852 IGCY--------------QSLELWNMSENKTMTL 871 (903)
Q Consensus 852 ~s~d--------------g~I~vwdl~~~~~~~~ 871 (903)
|+.. ..+.+||+.+.+...+
T Consensus 384 GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 384 GGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 6643 2588999988876543
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.70 E-value=5.5 Score=46.11 Aligned_cols=268 Identities=15% Similarity=0.066 Sum_probs=123.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC-CCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCcee
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 701 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~ 701 (903)
..+|.++.|.-.| .|.+|+.|| +..||..+++.+..-.... .+|..+.-+-.+ .|.+|+++| |++.+.+.....-
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 3468888888777 566677776 6677877777665544433 566666655555 566677666 7777766411110
Q ss_pred EEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceeE-E-EecCCCEEEEEEcCCeEEEEEC
Q 002591 702 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQM-R-FQPHLGRYLAAAAENVVSILDA 777 (903)
Q Consensus 702 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~--~~~~~v-~-~sp~~~~ll~~s~dg~I~i~D~ 777 (903)
.-..-....|..+.-...|. +..|++.|..+.--.+.+-.....+ .....+ . +....+.+.+++.++.+++-+.
T Consensus 240 ~~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a 317 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQGE--LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTA 317 (671)
T ss_pred cCCCCcchheeeeecccCCC--EEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEecc
Confidence 11111233444444443443 2345555544332222211111111 111111 1 2233456677777776666543
Q ss_pred CCCeEEEEecCCCC-CeEEEEEcC---CCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 002591 778 ETQACRLSLQGHTK-PIDSVCWDP---SGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 853 (903)
Q Consensus 778 ~t~~~~~~l~~h~~-~V~sl~~sp---dg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s 853 (903)
. ......+...++ .+-.++..| +.......+.+.+.+-+-.++.....++... ...|+.+++..++ .+-.++
T Consensus 318 ~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~R--g~nit~~~~d~~g-~lWlgs 393 (671)
T COG3292 318 D-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLR--GMNITTTLEDSRG-RLWLGS 393 (671)
T ss_pred h-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecc--ccccchhhhccCC-cEEEEe
Confidence 2 111111111111 111111111 0000111011111222222221111122221 3345555666644 466666
Q ss_pred CCCeEEEEECCC-CcEEEEc--cCCCCEEEEEEecCCCEEEEEecCCcEEE
Q 002591 854 CYQSLELWNMSE-NKTMTLT--AHEGLIAALAVSTETGYVASASHDKFVKL 901 (903)
Q Consensus 854 ~dg~I~vwdl~~-~~~~~~~--~h~~~V~sl~~spdg~~LaSgs~DG~I~I 901 (903)
..+-+..|+..+ +-..... ...+.|..+.-.|+++ |..|+.+|.+++
T Consensus 394 ~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 394 MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred cccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 665566677666 3333221 2456788888889888 667777887653
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=2.3 Score=50.12 Aligned_cols=176 Identities=7% Similarity=-0.027 Sum_probs=81.5
Q ss_pred CCEEEEEeCCC-----cEEEEECCCCcee--EEeccCCCCeEEEEECCCCCEEEEEeCC--CcEEEEeCCCCCceeEEec
Q 002591 635 GKLLATGGHDK-----KAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYSLRTFM 705 (903)
Q Consensus 635 g~~Latgs~Dg-----~V~vWd~~t~~~~--~~l~~h~~~V~~l~fspdg~~Lasgs~D--g~I~IWDl~~~~~~~~~~~ 705 (903)
+.++++|+.++ ++..||..+..-. ..+.........+. -++...+.|+.+ ..+..||..++.. ....
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W--~~~~ 347 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAW--VNMP 347 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeE--EECC
Confidence 45566676543 4667887654322 22221111122222 356677777754 4578888765322 1111
Q ss_pred cCCCce--EEEEecCCCCeEEEEEeCCC---cEEEEEcCCCeeeEEeec--CceeEEEecCCCEEEEEEcCCeEEEEECC
Q 002591 706 GHSASV--MSLDFHPNKDDLICSCDGDG---EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAE 778 (903)
Q Consensus 706 ~h~~~V--~sl~fsp~~~~ll~sgs~Dg---~I~iwDi~t~~~~~~~~~--~~~~v~~sp~~~~ll~~s~dg~I~i~D~~ 778 (903)
.-..+. .+++.. ++.+.+.|+.++ .+..||.++.+....-.. +....+...-++.+++.+ |.+.+||.+
T Consensus 348 ~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~ 423 (480)
T PHA02790 348 SLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCES 423 (480)
T ss_pred CCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCC
Confidence 111111 112222 345666777553 477889887664432111 111111112234444443 457788887
Q ss_pred CCeEEE--EecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCC
Q 002591 779 TQACRL--SLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGS 820 (903)
Q Consensus 779 t~~~~~--~l~~h~~~V~sl~~spdg~~lasgs~d------~I~iwdl~s 820 (903)
+.+-.. .+....... +++. -++++.+.|+.+ .|.+||..+
T Consensus 424 ~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence 764432 221111122 2222 246666666532 456666654
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.60 E-value=7.3 Score=39.58 Aligned_cols=168 Identities=14% Similarity=0.155 Sum_probs=90.7
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEE-eCCCcEEEEeCCCCCceeEEeccCCCc
Q 002591 634 DGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSAS 710 (903)
Q Consensus 634 dg~~Latgs~--Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~IWDl~~~~~~~~~~~~h~~~ 710 (903)
+|.++.+.+. ...|++||+.+++.+..-.-....+..=-...-+.++..- =.+|...+||.++ -+++..+. ..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t-~~~lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT-LEELGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHH-hhhhcccc-cCCc
Confidence 5566666553 3479999999988877654332122111111123333333 3378888899887 44454444 3344
Q ss_pred eEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----c----CceeEEEecCCCEEEE-EEcCCeEEEEECCCCe
Q 002591 711 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----G----GTAQMRFQPHLGRYLA-AAAENVVSILDAETQA 781 (903)
Q Consensus 711 V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~----~----~~~~v~~sp~~~~ll~-~s~dg~I~i~D~~t~~ 781 (903)
=+.++. ++..++ .++...+++.-|.++.....+.. + ..+.+.|. + +.+++ .-.+..|...|..+|+
T Consensus 133 GWgLt~--d~~~Li-msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-d-G~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 133 GWGLTS--DDKNLI-MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-D-GELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred ceeeec--CCcceE-eeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-c-cEEEEeeeeecceEEEcCCCCc
Confidence 555654 345565 45445677777776654333321 1 11112221 1 23333 2335566666777777
Q ss_pred EEEEec------------CCCCCeEEEEEcCCCC-EEEEE
Q 002591 782 CRLSLQ------------GHTKPIDSVCWDPSGE-LLASV 808 (903)
Q Consensus 782 ~~~~l~------------~h~~~V~sl~~spdg~-~lasg 808 (903)
.+..+. .|....+.|++.|++. ++++|
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 665442 2445678899999885 44444
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=92.50 E-value=3.2 Score=49.71 Aligned_cols=109 Identities=12% Similarity=0.203 Sum_probs=69.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEe--CCCCEEEEEECCCeEEEEECC---
Q 002591 791 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH--PTYPSLLVIGCYQSLELWNMS--- 864 (903)
Q Consensus 791 ~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~s--p~g~~l~t~s~dg~I~vwdl~--- 864 (903)
....-+.-+.-++..++.+.. .+.|||.+.+. .+.-..+ .....|.++.|. |++..+++.|..+.|.+|--.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 344444444445544444444 89999998763 1111222 346778888874 689999999999999998532
Q ss_pred --CC-------cEEEEccCC-CCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 865 --EN-------KTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 865 --~~-------~~~~~~~h~-~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.. +.+.+..|+ .+|.+.+|.++|.+++.++ +.+.|++
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 11 122344555 6899999999997666553 3465553
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=92.26 E-value=16 Score=41.57 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=10.1
Q ss_pred cEEEEEcCCCeeeE
Q 002591 732 EIRYWSINNGSCTR 745 (903)
Q Consensus 732 ~I~iwDi~t~~~~~ 745 (903)
.|.+||..+.+...
T Consensus 190 ~v~~YD~~t~~W~~ 203 (376)
T PRK14131 190 EVLSYDPSTNQWKN 203 (376)
T ss_pred eEEEEECCCCeeeE
Confidence 58889988776543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.41 Score=36.68 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=28.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 002591 665 SSLITDVRFSPSMPRLATSSFDKTVRVWDAD 695 (903)
Q Consensus 665 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~ 695 (903)
...|.+++|+|...+||.+..||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
|
|
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=92.24 E-value=17 Score=38.09 Aligned_cols=190 Identities=18% Similarity=0.215 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEE--CCCCC--EEEEEeC--CCcEEEEeCCCCCc
Q 002591 626 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF--SPSMP--RLATSSF--DKTVRVWDADNPGY 699 (903)
Q Consensus 626 V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~f--spdg~--~Lasgs~--Dg~I~IWDl~~~~~ 699 (903)
|+--+-+|+...+++....+-++|||+. ++.+..+....-.-.++.+ --.|. .|+++|. ..+|.+|.++....
T Consensus 58 IwVh~t~P~kS~vItt~Kk~Gl~VYDLs-GkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~ 136 (364)
T COG4247 58 IWVHATNPDKSLVITTVKKAGLRVYDLS-GKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQ 136 (364)
T ss_pred eEeccCCcCcceEEEeeccCCeEEEecC-CCeeeecCCCcccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCcc
Confidence 4444446777788888888889999986 5666665433222222222 12233 2455543 56788998876444
Q ss_pred eeEEeccC-------CCceEEEEecC--C-CCeEEEEEeCCCcEEEEEcCC---C----eeeEEeecC--ceeEEEecCC
Q 002591 700 SLRTFMGH-------SASVMSLDFHP--N-KDDLICSCDGDGEIRYWSINN---G----SCTRVFKGG--TAQMRFQPHL 760 (903)
Q Consensus 700 ~~~~~~~h-------~~~V~sl~fsp--~-~~~ll~sgs~Dg~I~iwDi~t---~----~~~~~~~~~--~~~v~~sp~~ 760 (903)
.+..+... ...++.++... . +.+++++...+|.|+-|.+.. + +.++.|+.. ...+......
T Consensus 137 ~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEt 216 (364)
T COG4247 137 YLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDET 216 (364)
T ss_pred ceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeecccc
Confidence 44444422 33455666543 3 566777788899998887643 2 355555543 2333334444
Q ss_pred CEEEEEEcCCeEEEEECC-------CCeEEEEecCC---CCCeE--EEEEcCCCC-EEEEEeCC--eEEEEEC
Q 002591 761 GRYLAAAAENVVSILDAE-------TQACRLSLQGH---TKPID--SVCWDPSGE-LLASVSED--SVRVWTV 818 (903)
Q Consensus 761 ~~ll~~s~dg~I~i~D~~-------t~~~~~~l~~h---~~~V~--sl~~spdg~-~lasgs~d--~I~iwdl 818 (903)
+.+..+-.| +-||... +++.+.++... +..|. .|-+-|+|+ ||+..+.+ +..+|..
T Consensus 217 G~LYIaeEd--vaiWK~~Aep~~G~~g~~idr~~d~~~LtdDvEGltiYy~pnGkGYL~aSSQGnNtya~y~R 287 (364)
T COG4247 217 GFLYIAEED--VAIWKYEAEPNRGNTGRLIDRIKDLSYLTDDVEGLTIYYGPNGKGYLLASSQGNNTYAAYTR 287 (364)
T ss_pred ceEEEeecc--ceeeecccCCCCCCccchhhhhcCchhhcccccccEEEEcCCCcEEEEEecCCCceEEEEEe
Confidence 555555554 4455432 23444433321 12232 356778887 66666655 5555554
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=92.15 E-value=8.3 Score=43.10 Aligned_cols=39 Identities=5% Similarity=0.055 Sum_probs=22.0
Q ss_pred CeEEEEECCCCcEEEEccC-----CCCEEEEEEecCCCEEEEEec
Q 002591 856 QSLELWNMSENKTMTLTAH-----EGLIAALAVSTETGYVASASH 895 (903)
Q Consensus 856 g~I~vwdl~~~~~~~~~~h-----~~~V~sl~~spdg~~LaSgs~ 895 (903)
..|.+||..+.+...+... .....++ ..-++++++.|+.
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~-~~~~~~iyv~GG~ 260 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAH-AVVGKYIIIFGGE 260 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeee-EEECCEEEEECcc
Confidence 4689999988876644321 1111222 2235677777774
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.3 Score=54.81 Aligned_cols=121 Identities=13% Similarity=0.065 Sum_probs=74.4
Q ss_pred CeEEEEECCCCeEEE-----EecC------CCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeecCCCc
Q 002591 770 NVVSILDAETQACRL-----SLQG------HTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 836 (903)
Q Consensus 770 g~I~i~D~~t~~~~~-----~l~~------h~~~V~sl~~spdg~-~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~ 836 (903)
-.|+.||+++...-. -+.. ...-..++.|.|.-. ..+.+..| .|++..+.-.. ..+..+ .-...
T Consensus 124 ~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~--~~v~s~-p~t~~ 200 (1405)
T KOG3630|consen 124 EAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLA--QNVTSF-PVTNS 200 (1405)
T ss_pred ceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhh--hhhccc-Ccccc
Confidence 367888887642211 1111 123356778888544 34444455 77777664321 111111 22566
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCcEEEEc---c-CCCCEEEEEEecCCCEEEEE
Q 002591 837 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT---A-HEGLIAALAVSTETGYVASA 893 (903)
Q Consensus 837 i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~---~-h~~~V~sl~~spdg~~LaSg 893 (903)
.++++|+|.|+.+++|-..|++.-|...-.....+. . ....|.+|+|-..-.++++-
T Consensus 201 ~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 201 QTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred eeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 889999999999999999999998876544322221 1 24789999998777776653
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=12 Score=42.48 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=20.4
Q ss_pred EEEEECCCCcEEEEccCC-CCEEEEEEecCCCEEEEEecC
Q 002591 858 LELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHD 896 (903)
Q Consensus 858 I~vwdl~~~~~~~~~~h~-~~V~sl~~spdg~~LaSgs~D 896 (903)
+.+||..+++...+..-. ..-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 568898877654222111 111122334467777777753
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=91.91 E-value=35 Score=41.12 Aligned_cols=238 Identities=10% Similarity=0.096 Sum_probs=116.6
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEecc-CCCCeEEEEECCC---CCEEEEEeC-CCcEEEEeCCCC---
Q 002591 627 ICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEE-HSSLITDVRFSPS---MPRLATSSF-DKTVRVWDADNP--- 697 (903)
Q Consensus 627 ~~l~fspdg~~Latgs~Dg~V~vWd~~-t~~~~~~l~~-h~~~V~~l~fspd---g~~Lasgs~-Dg~I~IWDl~~~--- 697 (903)
.+..++|+...+-.|=....|.-|=+. |.+.+..+.- .+..|.|+..... .++.++|-. .++-++-.+..+
T Consensus 31 vs~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~ 110 (670)
T PF10395_consen 31 VSDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGS 110 (670)
T ss_pred eecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcc
Confidence 334667777776666555566656554 5666666553 4455677765332 234444433 333343333221
Q ss_pred -------Cc--eeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeE--Eeec-CceeEEEe--------
Q 002591 698 -------GY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFKG-GTAQMRFQ-------- 757 (903)
Q Consensus 698 -------~~--~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~--~~~~-~~~~v~~s-------- 757 (903)
.. ....++ -.+.|..|.|..++.. +++...+|.|.+||...+.... ..+. ....+.|+
T Consensus 111 ~~~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~-I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~ 188 (670)
T PF10395_consen 111 TEDGTVNSETTNEFELK-LDDKVVGIKFSSDGKI-IYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFEL 188 (670)
T ss_pred ccccccCccccceEEEE-cccceEEEEEecCCCE-EEEEEcCCcEEEEeccccccccccccccccccceehhhhhccccc
Confidence 11 112222 3678999999977664 4577889999999993332111 1111 11111111
Q ss_pred -cCCCEEEEEEc-C---CeEEEEEC-CCCeEEEEec---CCCCCeEEEEEcC-CCCEEEEEeCCeEEEEECCCCCCcceE
Q 002591 758 -PHLGRYLAAAA-E---NVVSILDA-ETQACRLSLQ---GHTKPIDSVCWDP-SGELLASVSEDSVRVWTVGSGSEGECV 827 (903)
Q Consensus 758 -p~~~~ll~~s~-d---g~I~i~D~-~t~~~~~~l~---~h~~~V~sl~~sp-dg~~lasgs~d~I~iwdl~s~~~~~~i 827 (903)
.....+++.+. + -..+++.+ .+...+..+. .+........|+. +|. |+.-..++|.+|++........+
T Consensus 189 ~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l~~~~i~~ysip~f~~~~tI 267 (670)
T PF10395_consen 189 ENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK-LYQLSKKTISSYSIPNFQIQKTI 267 (670)
T ss_pred ccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCE-EEEEeCCEEEEEEcCCceEEEEE
Confidence 11234444443 2 25667777 1222222332 1222233333443 454 33335559999999776333333
Q ss_pred EEe--ecCC-CceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE
Q 002591 828 HEL--SCNG-NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 869 (903)
Q Consensus 828 ~~~--~~~~-~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~ 869 (903)
... -... ..+.++.- |..++++. +.++.|++.|+.-..++
T Consensus 268 ~l~~ii~~~~~~~vSl~~-~s~nRvLL-s~~nkIyLld~~~~siL 310 (670)
T PF10395_consen 268 SLPSIIDKESDDLVSLKP-PSPNRVLL-SVNNKIYLLDLKFESIL 310 (670)
T ss_pred EechhhccccccceEeec-CCCCeEEE-EcCCEEEEEeehhhhhh
Confidence 221 1111 12333322 22233333 45668999998655444
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.83 E-value=11 Score=42.39 Aligned_cols=115 Identities=14% Similarity=0.174 Sum_probs=74.6
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCc---eeEEeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcC
Q 002591 663 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 739 (903)
Q Consensus 663 ~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~---~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~ 739 (903)
...++|.+|.|++|.+.||+--.|++|.+++...+.. ...+.+..+..|..++|....+ +. ... +.-+.+|-+.
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A-~i~-~~G~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IA-FIT-DQGIEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EE-EEe-cCCeEEEEEc
Confidence 4566999999999999999999999999998843211 1222233455689999986633 33 333 3345566543
Q ss_pred CC----eeeEEeecCceeEEEecCCCEEEEEEc--CCeEEEEECCCC
Q 002591 740 NG----SCTRVFKGGTAQMRFQPHLGRYLAAAA--ENVVSILDAETQ 780 (903)
Q Consensus 740 t~----~~~~~~~~~~~~v~~sp~~~~ll~~s~--dg~I~i~D~~t~ 780 (903)
.. +.+++.+.++....|.++...++.++. .+++.-+-++++
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 32 345566677888888888877666554 344444444443
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=91.69 E-value=20 Score=42.44 Aligned_cols=224 Identities=15% Similarity=0.164 Sum_probs=107.0
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCCc-eeEEeccC-CCceEEEEecCCCCeEEEEEeC--CCcEEEEEcCCCeeeEEee-
Q 002591 674 SPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGH-SASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFK- 748 (903)
Q Consensus 674 spdg~~Lasgs~Dg~I~IWDl~~~~~-~~~~~~~h-~~~V~sl~fsp~~~~ll~sgs~--Dg~I~iwDi~t~~~~~~~~- 748 (903)
..++..++.+..+|.+....+...+. ......+. .....++++..++..+++.|+. |+.+..|....-+++..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 45677899999999999888875332 12222223 5566778887766345556665 5555556644444555554
Q ss_pred -cCceeEEEecC----CC------EEEEEEc---CCeEEEEECCCCeE--EEEecCC--CCCeEEEEEcC-CCCEEEEEe
Q 002591 749 -GGTAQMRFQPH----LG------RYLAAAA---ENVVSILDAETQAC--RLSLQGH--TKPIDSVCWDP-SGELLASVS 809 (903)
Q Consensus 749 -~~~~~v~~sp~----~~------~ll~~s~---dg~I~i~D~~t~~~--~~~l~~h--~~~V~sl~~sp-dg~~lasgs 809 (903)
+++..+++... .. .+++++. +|.++++.---+-. ....... ...++.+.... ++.+|+.+.
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 46666666432 12 6677654 57888773221111 1111111 22344444322 255888877
Q ss_pred CCeEEEEECCCCCCcceEEEe-----ecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEEE-E-ccCCCCEEEEE
Q 002591 810 EDSVRVWTVGSGSEGECVHEL-----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-L-TAHEGLIAALA 882 (903)
Q Consensus 810 ~d~I~iwdl~s~~~~~~i~~~-----~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~-~-~~h~~~V~sl~ 882 (903)
.+.-+++.+........+..+ ......+.+..+. +..++=.+. ..|++.+...++... + ......|.+.+
T Consensus 379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~ 455 (504)
T PF10433_consen 379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAAS 455 (504)
T ss_dssp SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence 775566666421111222111 1111122222222 333443333 358888887777662 2 23444555555
Q ss_pred EecCCCEEEEEecCCcEEEc
Q 002591 883 VSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 883 ~spdg~~LaSgs~DG~I~IW 902 (903)
+ ++.+++.+-.++.+.++
T Consensus 456 ~--~~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 456 I--NDPQVLVALSGGELVYF 473 (504)
T ss_dssp E--SSSEEEEEE-TTEEEEE
T ss_pred E--CCCEEEEEEeCCcEEEE
Confidence 4 33456666566666554
|
... |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=91.44 E-value=8.8 Score=44.34 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=27.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-------CCceeEEe-ccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 694 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~-------t~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 694 (903)
.....+..|...|..+++. |..+.||+.. ++.....+ .++...+.+| +++....|.|++|+-
T Consensus 26 ~~~~~~gi~~e~g~Aw~~~--d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~ 95 (422)
T PF08801_consen 26 QSPCSMGIFPEIGRAWIVV--DNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWES 95 (422)
T ss_dssp TTS-EEEEE-TTSEEEEEE--TTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES-
T ss_pred ccceEEEEEcccCEEEEEE--CCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEeccc
Confidence 3445555665566444443 6789999984 23323333 3333333332 455566888999975
Q ss_pred CC
Q 002591 695 DN 696 (903)
Q Consensus 695 ~~ 696 (903)
-.
T Consensus 96 I~ 97 (422)
T PF08801_consen 96 IS 97 (422)
T ss_dssp TT
T ss_pred ch
Confidence 43
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=91.30 E-value=13 Score=41.26 Aligned_cols=107 Identities=8% Similarity=0.013 Sum_probs=51.7
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCce---eEEec---cCCCCeEEEEECCCCCEEEEEeC-----CCcEEEEeCCCC
Q 002591 634 DGKLLATGGHD-----KKAVLWHTDTLKS---KTNLE---EHSSLITDVRFSPSMPRLATSSF-----DKTVRVWDADNP 697 (903)
Q Consensus 634 dg~~Latgs~D-----g~V~vWd~~t~~~---~~~l~---~h~~~V~~l~fspdg~~Lasgs~-----Dg~I~IWDl~~~ 697 (903)
++.+++.|+.+ ..|..||+.+.+- ...+. .......++. -++++.+.|+. ...+.+||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~--~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY--KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE--ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 45677777754 3566777765442 12221 1111111222 24566666664 235888888764
Q ss_pred CceeE-EeccCCCceEEEEecCCCCeEEEEEeCCC----cEEEEEcCCCeee
Q 002591 698 GYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYWSINNGSCT 744 (903)
Q Consensus 698 ~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg----~I~iwDi~t~~~~ 744 (903)
..... .+......-.+++.. ++.+++.|+.++ .+.+||+++.+..
T Consensus 150 ~W~~~~~~p~~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 150 EWFELPDFPGEPRVQPVCVKL--QNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CeeECCCCCCCCCCcceEEEE--CCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 33221 121111111112222 345666777654 3568898877643
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.11 E-value=2.3 Score=48.19 Aligned_cols=128 Identities=14% Similarity=0.101 Sum_probs=84.2
Q ss_pred EEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCC--------CEEEEEeCCeEEEEECCCCCCcceEEEeec--CCC
Q 002591 766 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG--------ELLASVSEDSVRVWTVGSGSEGECVHELSC--NGN 835 (903)
Q Consensus 766 ~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg--------~~lasgs~d~I~iwdl~s~~~~~~i~~~~~--~~~ 835 (903)
+.....++-.|++.|+.+.++..|... -+.|.|+. ..|+..+...|.-.|.+-....-.+...+. ..+
T Consensus 486 g~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn 563 (776)
T COG5167 486 GGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKN 563 (776)
T ss_pred CCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccc
Confidence 334567888899999999998877766 45677743 345555555666666654322112222211 122
Q ss_pred ceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEE-EEccCCCCEEEEEEecCCCEEEEEecC
Q 002591 836 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 896 (903)
Q Consensus 836 ~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~D 896 (903)
.+.+.. .....+|++++..|.|++||--..+.. .+.+....|..+..+.+|++|++.|..
T Consensus 564 ~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 564 KFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred cccccc-cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 233333 234568999999999999996554443 677788899999999999988777654
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=91.05 E-value=51 Score=42.17 Aligned_cols=81 Identities=16% Similarity=0.130 Sum_probs=42.6
Q ss_pred eeeeeEeecCCCCeEEEEEcC--CCC-EE----EEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEEC---CCCC-EEE
Q 002591 613 FKEANSVRASTSKVICCHFSS--DGK-LL----ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS---PSMP-RLA 681 (903)
Q Consensus 613 ~~~~~~l~~H~~~V~~l~fsp--dg~-~L----atgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fs---pdg~-~La 681 (903)
.....-..+|...|.|..+.- ++. +| ++.+-||.+.|=|.. .++.+.......+-+... +..+ +||
T Consensus 337 vitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN---yIRRI~~dg~v~tIl~L~~t~~sh~Yy~A 413 (1899)
T KOG4659|consen 337 VITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN---YIRRISQDGQVSTILTLGLTDTSHSYYIA 413 (1899)
T ss_pred eEEEeccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccch---heeeecCCCceEEEEEecCCCccceeEEE
Confidence 333444568888888877653 222 22 234578888887753 233332222222222222 2222 456
Q ss_pred EEeCCCcEEEEeCCC
Q 002591 682 TSSFDKTVRVWDADN 696 (903)
Q Consensus 682 sgs~Dg~I~IWDl~~ 696 (903)
..-.||++.|-|..+
T Consensus 414 vsPvdgtlyvSdp~s 428 (1899)
T KOG4659|consen 414 VSPVDGTLYVSDPLS 428 (1899)
T ss_pred ecCcCceEEecCCCc
Confidence 656688887777664
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=91.05 E-value=6.7 Score=37.13 Aligned_cols=115 Identities=11% Similarity=0.113 Sum_probs=71.5
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCC-------ceeEEeccCCCceEEEEecC----CCCeEEEEEeCCCcEEEEE
Q 002591 669 TDVRFSPSMPRLATSSFDKTVRVWDADNPG-------YSLRTFMGHSASVMSLDFHP----NKDDLICSCDGDGEIRYWS 737 (903)
Q Consensus 669 ~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~-------~~~~~~~~h~~~V~sl~fsp----~~~~ll~sgs~Dg~I~iwD 737 (903)
..-+|......|++++.-|+|.|++..... ..++.+. -...|++|+-.+ ++..+|+.|+ ...|..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 345666667789999999999999876421 1233333 456677776443 2344665666 67899999
Q ss_pred cCCCeee--EEeecCceeEEEecC---CCEEEEEEcCCeEEEEECCCCeEEEE
Q 002591 738 INNGSCT--RVFKGGTAQMRFQPH---LGRYLAAAAENVVSILDAETQACRLS 785 (903)
Q Consensus 738 i~t~~~~--~~~~~~~~~v~~sp~---~~~ll~~s~dg~I~i~D~~t~~~~~~ 785 (903)
+....-+ +.+..++.++.+-.- ...++..+.+..|.-||.+-.+...+
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 9876533 445566766665322 24456666666666666655444443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.84 E-value=7.9 Score=45.59 Aligned_cols=167 Identities=8% Similarity=-0.110 Sum_probs=79.6
Q ss_pred CeEEEEEeCCC-----cEEEEEcCCCeeeEEee--cCc-eeEEEecCCCEEEEEEcC--CeEEEEECCCCeEEE--EecC
Q 002591 721 DDLICSCDGDG-----EIRYWSINNGSCTRVFK--GGT-AQMRFQPHLGRYLAAAAE--NVVSILDAETQACRL--SLQG 788 (903)
Q Consensus 721 ~~ll~sgs~Dg-----~I~iwDi~t~~~~~~~~--~~~-~~v~~sp~~~~ll~~s~d--g~I~i~D~~t~~~~~--~l~~ 788 (903)
+.++++|+.++ .+..||..+.+....-. ... .......++..+++|+.+ ..+..||..+.+-.. .+..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 45666676542 57778888776443221 111 111223344555556543 468888877654322 1111
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002591 789 HTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 789 h~~~V~sl~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~ 864 (903)
..... +++ .-+|++.+.|+.+ .+..||.++.. ...+..+....... + +..-+++..++| |.+.+||..
T Consensus 352 ~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~-W~~~~~m~~~r~~~-~-~~~~~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 352 PRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQ-WQFGPSTYYPHYKS-C-ALVFGRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCE-EEeCCCCCCccccc-e-EEEECCEEEEEC---CceEEecCC
Confidence 11111 222 2257766666643 47788876541 11111111111111 1 222344444444 357889998
Q ss_pred CCcEEEEccC--CCCEEEEEEecCCCEEEEEecC
Q 002591 865 ENKTMTLTAH--EGLIAALAVSTETGYVASASHD 896 (903)
Q Consensus 865 ~~~~~~~~~h--~~~V~sl~~spdg~~LaSgs~D 896 (903)
+++...+..- ...-.+++ .-++++.+.|+.+
T Consensus 424 ~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~ 456 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFY 456 (480)
T ss_pred CCcEeEcCCCCCCccccEEE-EECCEEEEECCcC
Confidence 8776543321 11111222 2467788888764
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.70 E-value=1.9 Score=54.30 Aligned_cols=160 Identities=16% Similarity=0.263 Sum_probs=87.2
Q ss_pred CCCcEEEEECCCCceeEEeccCCCCeEEEEE--------CCCCCEEEEEeCCCcEEEEeCCCCCc--ee------EEecc
Q 002591 643 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRF--------SPSMPRLATSSFDKTVRVWDADNPGY--SL------RTFMG 706 (903)
Q Consensus 643 ~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~f--------spdg~~Lasgs~Dg~I~IWDl~~~~~--~~------~~~~~ 706 (903)
.|+.+.+|+.+++.....+.+-...|..|.. .|.=++|++-..--.|.|+-+.-... .. ..+..
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 5889999999998888888888888888765 23334555555555577764432111 11 11222
Q ss_pred CCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe
Q 002591 707 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL 786 (903)
Q Consensus 707 h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l 786 (903)
....|.||....+|+ +|+ ++.|| .+|.+--...-..|......++.+.. .-..+. .. +..+
T Consensus 177 dg~~V~~I~~t~nGR-IF~-~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s--------~ls~lv------Ps-~~~~ 237 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGR-IFF-AGRDG--NLYELVYQAEDGWFGSRCRKICLTKS--------VLSSLV------PS-LLSV 237 (1311)
T ss_pred CCceEEEEEeccCCc-EEE-eecCC--CEEEEEEeccCchhhcccccccCchh--------HHHHhh------hh-hhcC
Confidence 345688888666654 553 44566 44543211000000000111111000 000000 00 1112
Q ss_pred -cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002591 787 -QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 821 (903)
Q Consensus 787 -~~h~~~V~sl~~spdg~~lasgs~d-~I~iwdl~s~ 821 (903)
..+.++|..+.++....++.+-+.. +|.+||+...
T Consensus 238 ~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 238 PGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 2467789999998888888888877 8999999763
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.65 E-value=5.3 Score=50.99 Aligned_cols=227 Identities=11% Similarity=0.046 Sum_probs=105.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC-CCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeE
Q 002591 624 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 702 (903)
Q Consensus 624 ~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~ 702 (903)
.....++|++.-.++|.+..+|.|++|-..--+.......-. ..+..+.|-.....+.....+..+.+|.....+.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~--- 112 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG--- 112 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce---
Confidence 356678899999999999999999999754322222111111 0122222222222333334455566665543111
Q ss_pred EeccCCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEE----eecCce-eEEEecCCCEEEEEEcCCeEEEEEC
Q 002591 703 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKGGTA-QMRFQPHLGRYLAAAAENVVSILDA 777 (903)
Q Consensus 703 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~----~~~~~~-~v~~sp~~~~ll~~s~dg~I~i~D~ 777 (903)
.+ +...+++..-.+- -..+-+ ..+.+++||+.-...... +..... ...+.+..-.+..--.+-.-.++-+
T Consensus 113 ~~--~~~~~~~~~~~~~--~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 187 (993)
T KOG1983|consen 113 VF--LKQEITSFVTDPP--PDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISL 187 (993)
T ss_pred ee--cCCcceeccCCCC--cchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeec
Confidence 11 1222333322221 112344 788888888764321111 011100 0011110000000000000001111
Q ss_pred CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEECCCe
Q 002591 778 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 857 (903)
Q Consensus 778 ~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~ 857 (903)
.... ..+..+..++.+..+......+..+....+.+|+...... .+.+. +....+..++..++++..||.
T Consensus 188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~v~~h~Dgs 257 (993)
T KOG1983|consen 188 PDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYV---QSAYL-----PNGQLESRDGSHFVSYHTDGS 257 (993)
T ss_pred cccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccccc---hhhcc-----cccccCccCCceEEEEEecCC
Confidence 0000 1222345556666665555655555555666666543311 11111 111122778999999999999
Q ss_pred EEEEECCCCcE
Q 002591 858 LELWNMSENKT 868 (903)
Q Consensus 858 I~vwdl~~~~~ 868 (903)
+.+||...++.
T Consensus 258 ~~fWd~s~g~~ 268 (993)
T KOG1983|consen 258 YAFWDVSSGKL 268 (993)
T ss_pred EEeeecCCCce
Confidence 99999998754
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=90.65 E-value=5.9 Score=47.96 Aligned_cols=74 Identities=9% Similarity=0.021 Sum_probs=48.2
Q ss_pred CCCeEEEEEc--CCCCEEEEEeCC-eEEEEECCCCCCcceEEEeecCCCceEEEEEeCCC---C---EEEEEECCCeEEE
Q 002591 790 TKPIDSVCWD--PSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY---P---SLLVIGCYQSLEL 860 (903)
Q Consensus 790 ~~~V~sl~~s--pdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~sp~g---~---~l~t~s~dg~I~v 860 (903)
...+++++++ ...++||+++.. .|.||-+...........-..+...|.+++|-++. . ++++++-.|.+.+
T Consensus 163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~ 242 (717)
T PF08728_consen 163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT 242 (717)
T ss_pred CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence 3467889988 667788888777 77776654421111111112256678888887644 2 6777888898888
Q ss_pred EEC
Q 002591 861 WNM 863 (903)
Q Consensus 861 wdl 863 (903)
|++
T Consensus 243 ~~I 245 (717)
T PF08728_consen 243 FKI 245 (717)
T ss_pred EEE
Confidence 777
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=90.62 E-value=4.5 Score=42.76 Aligned_cols=129 Identities=16% Similarity=0.190 Sum_probs=75.0
Q ss_pred EEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEe---ecCCCceEEEEEeC
Q 002591 772 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHEL---SCNGNKFHSCVFHP 844 (903)
Q Consensus 772 I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~---~~~~~~i~si~~sp 844 (903)
-.+||+.+.+...........+.+-.+.+||++|.+|+.. .+++|+...........+. -.......+...-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 4678988876543322233334445688999999998763 6888886541110111110 11233445566678
Q ss_pred CCCEEEEEECCC-eEEEEECCC--CcEEEE--cc------CCCCEEEEEEecCCCEEEEEecCCcEE
Q 002591 845 TYPSLLVIGCYQ-SLELWNMSE--NKTMTL--TA------HEGLIAALAVSTETGYVASASHDKFVK 900 (903)
Q Consensus 845 ~g~~l~t~s~dg-~I~vwdl~~--~~~~~~--~~------h~~~V~sl~~spdg~~LaSgs~DG~I~ 900 (903)
||+.|++|+... +..+|.-.. .....+ .. ....---+...|+|++|+.+..+..|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 999999999885 566666532 122211 11 111222455579999999998776654
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.61 E-value=2.4 Score=48.26 Aligned_cols=95 Identities=9% Similarity=0.197 Sum_probs=48.4
Q ss_pred ceeEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEe
Q 002591 751 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL 830 (903)
Q Consensus 751 ~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~ 830 (903)
+..+..++.|..++.++.+|.+.++=.+..-.-..++.....|+|=.|.-+..++ +.+.
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~f-tss~-------------------- 164 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFF-TSST-------------------- 164 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceee-ccCC--------------------
Confidence 3446677788888888887766554322222222222222233333332211111 1110
Q ss_pred ecCCCceEEEEEeCCC---CEEEEEECCCeEEEEECCCCcEE
Q 002591 831 SCNGNKFHSCVFHPTY---PSLLVIGCYQSLELWNMSENKTM 869 (903)
Q Consensus 831 ~~~~~~i~si~~sp~g---~~l~t~s~dg~I~vwdl~~~~~~ 869 (903)
.-.+..++|||+. .+|++-..|..|++||+.+.+.+
T Consensus 165 ---~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 165 ---SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ---ceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 1123445677754 56777777788888887765544
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.52 E-value=11 Score=46.74 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=34.4
Q ss_pred CCcEEEEeCCCCCceeEEecc--CCCceEEEEecCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee
Q 002591 686 DKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 748 (903)
Q Consensus 686 Dg~I~IWDl~~~~~~~~~~~~--h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~~~~~~~~ 748 (903)
+|.++.|++-..+..+..+.. -.+.| .+.+|..+++++ +....+++||+...+.++..+
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~f~~~~La--gvG~~l~~YdlG~K~lLRk~e 971 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPV--GAICPFQGRVLA--GVGRFLRLYDLGKKKLLRKCE 971 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccc--eEEeccCCEEEE--ecccEEEEeeCChHHHHhhhh
Confidence 455777777655554444332 22333 445566665553 335789999988777665543
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=89.97 E-value=8.4 Score=36.50 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=47.2
Q ss_pred CCCeEEEE---EcC--CCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEe---CCCCEEEEEECCCeEEEE
Q 002591 790 TKPIDSVC---WDP--SGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFH---PTYPSLLVIGCYQSLELW 861 (903)
Q Consensus 790 ~~~V~sl~---~sp--dg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~s---p~g~~l~t~s~dg~I~vw 861 (903)
...|++|+ |.| +...|+.|+...|..||+..... ...+++ ...+.++.+- ....-++..+.+..|.-|
T Consensus 47 n~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d-~Fyke~---~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gf 122 (136)
T PF14781_consen 47 NQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSD-LFYKEV---PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGF 122 (136)
T ss_pred CCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCch-hhhhhC---ccceeEEEEEecCCCCCcEEEECceEEEEEe
Confidence 45566664 432 34588999998999999976532 111222 3445555542 223446777777788888
Q ss_pred ECCCCcEE
Q 002591 862 NMSENKTM 869 (903)
Q Consensus 862 dl~~~~~~ 869 (903)
|....+..
T Consensus 123 d~~G~e~f 130 (136)
T PF14781_consen 123 DYEGNEIF 130 (136)
T ss_pred CCCCcEEE
Confidence 88776655
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=89.59 E-value=3.3 Score=47.31 Aligned_cols=52 Identities=19% Similarity=0.177 Sum_probs=42.4
Q ss_pred eEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCc
Q 002591 658 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS 710 (903)
Q Consensus 658 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~ 710 (903)
...+......+.+|+.+|++++.|+...=|.|.|+|+.+ +..++.++|..+.
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdA 351 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDA 351 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccc
Confidence 344555666789999999999988888889999999998 7788888887654
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=89.47 E-value=48 Score=38.54 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=40.6
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEec-----cCCCCeEEEEECCCC
Q 002591 619 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLE-----EHSSLITDVRFSPSM 677 (903)
Q Consensus 619 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~--~~~l~-----~h~~~V~~l~fspdg 677 (903)
+...-..-+.|+|.|||++|++--..|.|++++..++.. +..+. ........|+|+|+-
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 344566789999999998777765469999998654432 22121 135678999999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.35 E-value=60 Score=39.58 Aligned_cols=62 Identities=21% Similarity=0.285 Sum_probs=41.4
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEeCCCc--EEEEeCCCCCceeEEeccCCCceEEEEecCCCCeEEE
Q 002591 660 NLEEHSSLITDVRFSPSMPRLATSSFDKT--VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 725 (903)
Q Consensus 660 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~--I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 725 (903)
....+...+.++.|+|++..++..+.++. ..+|-+...+ .+..+...|....|++.+..+++
T Consensus 54 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 54 RLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred cccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEE
Confidence 34457778899999999999988874332 4455444322 33345556777888888776654
|
|
| >KOG2109 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.25 E-value=0.88 Score=53.05 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=53.9
Q ss_pred ceeeeeEeecCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCce-----eEEeccC-----CCCeEEEEECCCCCEE
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKS-----KTNLEEH-----SSLITDVRFSPSMPRL 680 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg-~V~vWd~~t~~~-----~~~l~~h-----~~~V~~l~fspdg~~L 680 (903)
++..+..|+.|..+|..++|.+.|.+|++++..| .|.++.+....+ ...+..| ...|-.|+|+....++
T Consensus 304 S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~~r 383 (788)
T KOG2109|consen 304 SFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVSTIR 383 (788)
T ss_pred chhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhhcceE
Confidence 6777888999999999999999999999988765 355555431111 1111111 2346678888888888
Q ss_pred EEEeCCCc
Q 002591 681 ATSSFDKT 688 (903)
Q Consensus 681 asgs~Dg~ 688 (903)
+.++.+|+
T Consensus 384 ~~gsc~Ge 391 (788)
T KOG2109|consen 384 TAGSCEGE 391 (788)
T ss_pred eecccCCC
Confidence 88887764
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=88.94 E-value=2.2 Score=44.45 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=47.9
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCcEEE--------Ec-------cCCCCEEEEEEecCCCEEEEEecCCcEEEcC
Q 002591 842 FHPTYPSLLVIGCYQSLELWNMSENKTMT--------LT-------AHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 842 ~sp~g~~l~t~s~dg~I~vwdl~~~~~~~--------~~-------~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+..++.++++.+.+|.+++||+.+++.+. +. .....|..+.++.+|.-|++-+ +|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 45578899999999999999999988761 11 3556789999998888777765 57788875
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.87 E-value=0.06 Score=60.27 Aligned_cols=140 Identities=19% Similarity=0.285 Sum_probs=93.1
Q ss_pred eEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeC--CeEEEEECCCCCCcceEEEe
Q 002591 753 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE--DSVRVWTVGSGSEGECVHEL 830 (903)
Q Consensus 753 ~v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~--d~I~iwdl~s~~~~~~i~~~ 830 (903)
...|.+.+..+++++.+..|..||-...... ... .++....++|+-++..++.... +.+++||+.+..... +..
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~l-e~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-LE~- 114 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVIL-ELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-LES- 114 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceec-ccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-Hhc-
Confidence 3456677777777777777877875433222 111 3455567889988885554443 389999998642111 111
Q ss_pred ecCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCcEEEEcc-CCCCEEEEEEecCCCEEEEEecCCc
Q 002591 831 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-HEGLIAALAVSTETGYVASASHDKF 898 (903)
Q Consensus 831 ~~~~~~i~si~~sp~g~~l~t~s~dg~I~vwdl~~~~~~~~~~-h~~~V~sl~~spdg~~LaSgs~DG~ 898 (903)
.+ ...-.-+.|++.+..++.+...+.+.||+..+.+.+...+ |...+++++|.+.+. ++.++.|..
T Consensus 115 gg-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~ 181 (615)
T KOG2247|consen 115 GG-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT 181 (615)
T ss_pred cC-cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence 11 1111125799999999999999999999999888775555 999999999988764 555555543
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=88.80 E-value=17 Score=42.76 Aligned_cols=142 Identities=14% Similarity=0.075 Sum_probs=72.3
Q ss_pred CCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEEeccCCCc---eEEEEecCC
Q 002591 643 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS---VMSLDFHPN 719 (903)
Q Consensus 643 ~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~---V~sl~fsp~ 719 (903)
..+.+.++|. .|..+..+.........+.+.++|.+++... ..++.+|+. ++.+..+.-.... =.++.+.|+
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~--G~v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL--GKVIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC--CCEEEeeecCCcccccccccEECCC
Confidence 3445556664 3444444432222222266778888887665 778888886 4444443322211 234667788
Q ss_pred CCeEEEEEe-------C-----CCcEEEEEcCCCeeeEEee------------------------------cCceeEEEe
Q 002591 720 KDDLICSCD-------G-----DGEIRYWSINNGSCTRVFK------------------------------GGTAQMRFQ 757 (903)
Q Consensus 720 ~~~ll~sgs-------~-----Dg~I~iwDi~t~~~~~~~~------------------------------~~~~~v~~s 757 (903)
|+.++++.. . +-.|..+| .+|+.+..+. .|++++.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 776664441 0 12344555 5555544321 145678888
Q ss_pred cCCCEEEEEEcC-CeEEEEECCCCeEEEEecCCC
Q 002591 758 PHLGRYLAAAAE-NVVSILDAETQACRLSLQGHT 790 (903)
Q Consensus 758 p~~~~ll~~s~d-g~I~i~D~~t~~~~~~l~~h~ 790 (903)
+.++.|++++.. ..|..+|.++++....+..+.
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 977888888875 489999999998888776553
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.54 E-value=39 Score=39.52 Aligned_cols=258 Identities=12% Similarity=0.048 Sum_probs=122.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeEE
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 703 (903)
Q Consensus 625 ~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~~ 703 (903)
+|..+..+-.| .|.+|+.+| |++.+.+..+...-.. -..+.|..+.-...| .+-.|+..|..+ +.....+..+..
T Consensus 207 ~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r-~~l~rq~Lq~~~ 282 (671)
T COG3292 207 AINALIADVQG-RLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWR-TRLPRQGLQIPL 282 (671)
T ss_pred hHHHHHHHhcC-cEEEEeccc-eEEEchhhccccccCCCCcchheeeeecccCC-CEEEeeccccee-EecCCCCccccc
Confidence 44444444344 466676665 6776655422111111 122334444333333 445555555332 233332322222
Q ss_pred eccCC--CceEEEEecCCCCeEEEEEeCCCcEEEEEcCCC--eeeEEeecCcee-EEEec--CCCEEEEEEcCCeEEEEE
Q 002591 704 FMGHS--ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--SCTRVFKGGTAQ-MRFQP--HLGRYLAAAAENVVSILD 776 (903)
Q Consensus 704 ~~~h~--~~V~sl~fsp~~~~ll~sgs~Dg~I~iwDi~t~--~~~~~~~~~~~~-v~~sp--~~~~ll~~s~dg~I~i~D 776 (903)
.+.|. +.|.++....+|. +.+++.+|.+++-+-.-. +.+...++.+.. ++..+ .+..+-...+-|.+.+-+
T Consensus 283 ~~~~l~~S~vnsL~~D~dGs--LWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van 360 (671)
T COG3292 283 SKMHLGVSTVNSLWLDTDGS--LWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVAN 360 (671)
T ss_pred cccCCccccccceeeccCCC--EeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEec
Confidence 22222 3455555555544 346776776665543211 111111121111 11111 122222223334455556
Q ss_pred CCCCeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEC
Q 002591 777 AETQACRLSLQG-HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGC 854 (903)
Q Consensus 777 ~~t~~~~~~l~~-h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~-~~~~i~si~~sp~g~~l~t~s~ 854 (903)
..++..+..... -...|+.+++..++.+-+....+.+..|+..+. ...+.+..+ ....|..+.-.|+++ |.+++.
T Consensus 361 ~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~--~avlde~agl~ss~V~aived~dns-LWIGTs 437 (671)
T COG3292 361 GSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNE--WAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTS 437 (671)
T ss_pred CCCCcEEEEeeeccccccchhhhccCCcEEEEecccchhhhccCCc--ccccccccCCcccceeeeeecCCCC-EEEecc
Confidence 666665554332 335677788887666444444447778887651 122222222 245677777888887 888888
Q ss_pred CCeEEEEECCCCcEEE---Ecc---CCCCEEEEEEecCCCEEEE
Q 002591 855 YQSLELWNMSENKTMT---LTA---HEGLIAALAVSTETGYVAS 892 (903)
Q Consensus 855 dg~I~vwdl~~~~~~~---~~~---h~~~V~sl~~spdg~~LaS 892 (903)
+|.++. +.+.++... +.. ..+.|..+.+.++|++-+.
T Consensus 438 ~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a 480 (671)
T COG3292 438 GGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLA 480 (671)
T ss_pred CCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEE
Confidence 876554 444433331 112 2345677788888885443
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=88.38 E-value=52 Score=37.63 Aligned_cols=108 Identities=13% Similarity=-0.004 Sum_probs=59.5
Q ss_pred CceeEEEecCCCEEEEEEcCCeEEEEECCCCe-----EEEEecC--CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCC
Q 002591 750 GTAQMRFQPHLGRYLAAAAENVVSILDAETQA-----CRLSLQG--HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS 822 (903)
Q Consensus 750 ~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t~~-----~~~~l~~--h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~ 822 (903)
....+.+.+++..++++ ..|.+..- ...+. ....+.. ....+.++.|.+++..+++|..+.+.+. ...++
T Consensus 282 ~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~ 358 (398)
T PLN00033 282 RIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGK 358 (398)
T ss_pred ceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCc
Confidence 34566777776655544 55554433 22222 1222221 2235889999998888888877744443 33333
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEECCCeEEEE
Q 002591 823 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 861 (903)
Q Consensus 823 ~~~~i~~~~~~~~~i~si~~sp~g~~l~t~s~dg~I~vw 861 (903)
..........-...++.+.|.++++ .++.+.+|.|.-|
T Consensus 359 tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 359 SWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred ceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 2222221122244577888876654 6666777776554
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.22 E-value=7 Score=46.74 Aligned_cols=93 Identities=14% Similarity=0.254 Sum_probs=54.9
Q ss_pred eeEEEecCCCEEEEEEcCC-----eEEEEECC---CCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCC
Q 002591 752 AQMRFQPHLGRYLAAAAEN-----VVSILDAE---TQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE 823 (903)
Q Consensus 752 ~~v~~sp~~~~ll~~s~dg-----~I~i~D~~---t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~ 823 (903)
..+.|-|.|..+++...|| .|.+|... .|+.-.. .+....+..++|+-....++.+..+.|.+|...+.
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy-- 326 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY-- 326 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHhhcceEEEEEccce--
Confidence 3478999999999887654 34444422 2222111 12334566788887777777777778999987654
Q ss_pred cceEEEeecCCCceEEEEEeCCCCE
Q 002591 824 GECVHELSCNGNKFHSCVFHPTYPS 848 (903)
Q Consensus 824 ~~~i~~~~~~~~~i~si~~sp~g~~ 848 (903)
............+.-+.|+|....
T Consensus 327 -hWYLK~e~~ip~~s~vkwhpe~~n 350 (1243)
T COG5290 327 -HWYLKVERQIPGISYVKWHPEEKN 350 (1243)
T ss_pred -EEEEEEeecCCCcceeeeccccCc
Confidence 211122222344566788886544
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=87.91 E-value=44 Score=36.25 Aligned_cols=214 Identities=11% Similarity=0.123 Sum_probs=115.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEeCCC------CCceeEEecc-----CCCceEEEEecCCCC-----------eEE
Q 002591 667 LITDVRFSPSMPRLATSSFDKTVRVWDADN------PGYSLRTFMG-----HSASVMSLDFHPNKD-----------DLI 724 (903)
Q Consensus 667 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~------~~~~~~~~~~-----h~~~V~sl~fsp~~~-----------~ll 724 (903)
.-+.|+|+|.+.+.++....+...+||... ....+.++.. .....+.+.|+.... -.+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 357899999998888888899999999971 1222333331 234567777764322 224
Q ss_pred EEEeCCCcEEEEEcCCCee-----eEEeec----Cc-eeEEEe--cCCCEEEEEEc-CCeEEEEECCCCeEEEEecCCCC
Q 002591 725 CSCDGDGEIRYWSINNGSC-----TRVFKG----GT-AQMRFQ--PHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTK 791 (903)
Q Consensus 725 ~sgs~Dg~I~iwDi~t~~~-----~~~~~~----~~-~~v~~s--p~~~~ll~~s~-dg~I~i~D~~t~~~~~~l~~h~~ 791 (903)
+.+++||+|.-|...-... ...+.. .+ ..+++. ..+.+|+++.. .++|.+||..-.+.... ....+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~D 182 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFID 182 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCccC
Confidence 5788999999998533222 112221 11 123333 23455555543 68899998653322110 00111
Q ss_pred CeEEEEEcC------CCCEEEEE--------------eCCeEEEEECCCCCCcceEEEeec--CCCceEEEEEeC-----
Q 002591 792 PIDSVCWDP------SGELLASV--------------SEDSVRVWTVGSGSEGECVHELSC--NGNKFHSCVFHP----- 844 (903)
Q Consensus 792 ~V~sl~~sp------dg~~lasg--------------s~d~I~iwdl~s~~~~~~i~~~~~--~~~~i~si~~sp----- 844 (903)
+-.-..|.| .++++++- +.+.|.+||+.- ..+..+.. .-+....++..|
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G----~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG----QLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC----cEEEEeccCCcccCCceeeeChhhhCC
Confidence 100001111 13333322 122578888753 34444422 123344455543
Q ss_pred -CCCEEEEEECCCeEEEEECCCCcEE-EEccCC------CCEEEEEEec
Q 002591 845 -TYPSLLVIGCYQSLELWNMSENKTM-TLTAHE------GLIAALAVST 885 (903)
Q Consensus 845 -~g~~l~t~s~dg~I~vwdl~~~~~~-~~~~h~------~~V~sl~~sp 885 (903)
.+..|+---.||+|..||..+++.+ .+.... ..++.|.|..
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 3455555556899999999988876 443322 3567888854
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=87.65 E-value=48 Score=36.38 Aligned_cols=195 Identities=10% Similarity=0.035 Sum_probs=89.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce---------------eEEeccCCCCeEEEEECCCC-CEEEEEe
Q 002591 622 STSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKS---------------KTNLEEHSSLITDVRFSPSM-PRLATSS 684 (903)
Q Consensus 622 H~~~V~~l~fspdg~~Latgs-~Dg~V~vWd~~t~~~---------------~~~l~~h~~~V~~l~fspdg-~~Lasgs 684 (903)
+...|+++...+.-+.|++-+ ....++++++..... ....-.|............. ..++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 456899999988777666544 334499999853221 01122344433333333222 2345555
Q ss_pred CCCcEEEEeCCCCCceeEEec-------cCCCceEEEEecCCC-CeEEEEEeCCCcEEEEEcCC--CeeeE-----Eeec
Q 002591 685 FDKTVRVWDADNPGYSLRTFM-------GHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINN--GSCTR-----VFKG 749 (903)
Q Consensus 685 ~Dg~I~IWDl~~~~~~~~~~~-------~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwDi~t--~~~~~-----~~~~ 749 (903)
...+|.++....+......+. .-..++..+..+++. ...++.|+..+...++++.. ..... ....
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~ 200 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE 200 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence 567787775544211111111 111233333323221 22455565433344454432 11000 0011
Q ss_pred ---CceeEEEecCCCEEEEEEcCCeEEEEECCC-Ce-EEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC
Q 002591 750 ---GTAQMRFQPHLGRYLAAAAENVVSILDAET-QA-CRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG 821 (903)
Q Consensus 750 ---~~~~v~~sp~~~~ll~~s~dg~I~i~D~~t-~~-~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~ 821 (903)
....+...++ +.++.+..+. ..+.|... .. ....+. -.....++++. ..+|++-..+.|.|+++.++
T Consensus 201 ~~~~p~~i~~l~~-~e~Llc~~~~-~v~Vn~~G~~~~r~~~l~-w~~~p~~~~~~--~pyll~~~~~~ievr~l~~~ 272 (302)
T smart00036 201 TSLKPISVVQVPR-DEFLLCYDEF-GVFVNLYGKRRSRNPILH-WEFMPESFAYH--SPYLLAFHDNGIEIRSIKTG 272 (302)
T ss_pred cccCceEEEEECC-CeEEEEECcE-EEEEeCCCCccccceEEE-cCCcccEEEEE--CCEEEEEcCCcEEEEECCCC
Confidence 1111222222 3455444443 33334332 11 111121 23445667776 46777777778999999887
|
Unpublished observations. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=87.55 E-value=88 Score=39.26 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=47.2
Q ss_pred CCCCeEEEEEc---C----CCCEEEEEeCCCcEEEEECC------C---------CceeEEecc---CCCCeEEEEECCC
Q 002591 622 STSKVICCHFS---S----DGKLLATGGHDKKAVLWHTD------T---------LKSKTNLEE---HSSLITDVRFSPS 676 (903)
Q Consensus 622 H~~~V~~l~fs---p----dg~~Latgs~Dg~V~vWd~~------t---------~~~~~~l~~---h~~~V~~l~fspd 676 (903)
-..+|..|+|. . ..++|++= ....+.|+... . ...+..+.. ...+..+|+|+|.
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 45688888887 2 22355554 34566666611 1 123333432 3446889999985
Q ss_pred -CCEEEEEeCCCcEEEEeC
Q 002591 677 -MPRLATSSFDKTVRVWDA 694 (903)
Q Consensus 677 -g~~Lasgs~Dg~I~IWDl 694 (903)
...||+....|...|||+
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred ccceEEEEeccCcEEEEEe
Confidence 458999999999999999
|
These proteins are found in fungi. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=87.50 E-value=2.1 Score=31.99 Aligned_cols=31 Identities=32% Similarity=0.574 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q 002591 624 SKVICCHFSSDG---KLLATGGHDKKAVLWHTDT 654 (903)
Q Consensus 624 ~~V~~l~fspdg---~~Latgs~Dg~V~vWd~~t 654 (903)
+.|.+|.|+|+. .+||.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 479999999744 5999998889999999984
|
It contains a characteristic DLL sequence motif. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=87.47 E-value=5.3 Score=48.33 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=74.5
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------C-------------ceeEEeccCCCCeEEEEEC--CCCCEEE
Q 002591 626 VICCHFSS--DGKLLATGGHDKKAVLWHTDT-------L-------------KSKTNLEEHSSLITDVRFS--PSMPRLA 681 (903)
Q Consensus 626 V~~l~fsp--dg~~Latgs~Dg~V~vWd~~t-------~-------------~~~~~l~~h~~~V~~l~fs--pdg~~La 681 (903)
|+-|.... +...|+.+..||.|.+|.+++ . ++...+. ....++.|+++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 44444433 456899999999999997631 0 0111222 34578999998 7778889
Q ss_pred EEeCCCcEEEEeCCCC--CceeEEeccCCCceEEEEecCCC--C---eEEEEEeCCCcEEEEEc
Q 002591 682 TSSFDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNK--D---DLICSCDGDGEIRYWSI 738 (903)
Q Consensus 682 sgs~Dg~I~IWDl~~~--~~~~~~~~~h~~~V~sl~fsp~~--~---~ll~sgs~Dg~I~iwDi 738 (903)
+++....|.||-.... ......-..|...|.+|+|.++. . ..+++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888755431 11111122366789999998764 1 26778888999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=87.22 E-value=4.1 Score=42.49 Aligned_cols=67 Identities=10% Similarity=0.117 Sum_probs=44.5
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEe-------c-------CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 002591 754 MRFQPHLGRYLAAAAENVVSILDAETQACRLSL-------Q-------GHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 819 (903)
Q Consensus 754 v~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l-------~-------~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~ 819 (903)
+.+...+.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+.+..+.|+..
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 334455566666666677777776666554321 1 24466888888888888887777777888875
Q ss_pred C
Q 002591 820 S 820 (903)
Q Consensus 820 s 820 (903)
-
T Consensus 96 L 96 (219)
T PF07569_consen 96 L 96 (219)
T ss_pred c
Confidence 4
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=87.05 E-value=11 Score=44.77 Aligned_cols=218 Identities=13% Similarity=0.194 Sum_probs=0.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCCceeE
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 702 (903)
Q Consensus 623 ~~~V~~l~fspdg~~Latgs~Dg~V~vWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~~~~~~~~ 702 (903)
...+++|.-+|.|..++.+..||.|++|++.. +....+-....+-..+.|...| |+++..|..+.-|.-+ +....
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~-r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d--gvvqq 88 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIP-RRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKED--GVVQQ 88 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecc-cchhhhhhhcCCccceeeeccc--eEEEeccchhheeecc--Ccchh
Q ss_pred Eec---cCCCceEEEEecCCCCeEEEEEeCCCcEEEEE--cCCCeeeEEeecCceeEEEecCCCEEEEEEcCCeEEEEEC
Q 002591 703 TFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWS--INNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDA 777 (903)
Q Consensus 703 ~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwD--i~t~~~~~~~~~~~~~v~~sp~~~~ll~~s~dg~I~i~D~ 777 (903)
.|. .......++...|...+++ |.--|-|.-+| ++.+-....|+ ++-..-..|.+-|+
T Consensus 89 qfdyndqsekefss~~cdptaqnvv--gtlcggv~q~dcclrr~i~knkfe---------------~tyv~pshvilkdl 151 (1636)
T KOG3616|consen 89 QFDYNDQSEKEFSSILCDPTAQNVV--GTLCGGVEQFDCCLRRGILKNKFE---------------LTYVAPSHVILKDL 151 (1636)
T ss_pred hccccchhhhhccceecCchhhhhh--hhhccceeeehHHHHhHHHhccce---------------eEEeccceeeeecc
Q ss_pred CCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeecCCCceEEEEEe-CCCCEEEEEECCC
Q 002591 778 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFH-PTYPSLLVIGCYQ 856 (903)
Q Consensus 778 ~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~si~~s-p~g~~l~t~s~dg 856 (903)
.++.....+....-.|..+.+--..+|++.-...+|.|=|+. ...+..++|- ..|..-+.-..++
T Consensus 152 sn~trt~l~s~~g~aidelkilgkdryli~~ts~siii~d~e--------------s~rfsei~wqgsgg~ekfffd~~n 217 (1636)
T KOG3616|consen 152 SNDTRTNLISHKGLAIDELKILGKDRYLIAHTSESIIIADLE--------------SNRFSEIAWQGSGGHEKFFFDFEN 217 (1636)
T ss_pred cCCceEeeeecCCcchhhhhhccccceEEeeccccEEEeecc--------------cchhhhhhcccCCCcceeeeecCc
Q ss_pred eEEEEECCCCcEEEEccCCC
Q 002591 857 SLELWNMSENKTMTLTAHEG 876 (903)
Q Consensus 857 ~I~vwdl~~~~~~~~~~h~~ 876 (903)
...|++..+-.++.......
T Consensus 218 ~cli~nageltlveyg~d~s 237 (1636)
T KOG3616|consen 218 CCLIFNAGELTLVEYGNDDS 237 (1636)
T ss_pred EEEEEecCeeEEEEecCCCc
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=87.04 E-value=31 Score=38.52 Aligned_cols=182 Identities=10% Similarity=-0.031 Sum_probs=0.0
Q ss_pred EEEEcCCCCEEEEEeCC-----------CcEEEEECCCCceeEEeccCCCCeEEEEEC--CCCCEEEEEeCC--------
Q 002591 628 CCHFSSDGKLLATGGHD-----------KKAVLWHTDTLKSKTNLEEHSSLITDVRFS--PSMPRLATSSFD-------- 686 (903)
Q Consensus 628 ~l~fspdg~~Latgs~D-----------g~V~vWd~~t~~~~~~l~~h~~~V~~l~fs--pdg~~Lasgs~D-------- 686 (903)
.....-++++.+.|+.+ ..+..||..+.+=............+.+.. -++++.+.|+.+
T Consensus 57 ~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~ 136 (346)
T TIGR03547 57 AVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYF 136 (346)
T ss_pred ceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHH
Q ss_pred -------------------------------CcEEEEeCCCCCceeEEeccC-CCceEEEEecCCCCeEEEEEeCC----
Q 002591 687 -------------------------------KTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDDLICSCDGD---- 730 (903)
Q Consensus 687 -------------------------------g~I~IWDl~~~~~~~~~~~~h-~~~V~sl~fsp~~~~ll~sgs~D---- 730 (903)
..|.+||..+.......-... ...-.+++.. ++.+++.|+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~--~~~iyv~GG~~~~~~ 214 (346)
T TIGR03547 137 ADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHK--GNKLLLINGEIKPGL 214 (346)
T ss_pred hhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEE--CCEEEEEeeeeCCCc
Q ss_pred --CcEEEEEcCCCeeeEEeecCc------------eeEEEecCCCEEEEEEcC----------------------CeEEE
Q 002591 731 --GEIRYWSINNGSCTRVFKGGT------------AQMRFQPHLGRYLAAAAE----------------------NVVSI 774 (903)
Q Consensus 731 --g~I~iwDi~t~~~~~~~~~~~------------~~v~~sp~~~~ll~~s~d----------------------g~I~i 774 (903)
..+.+||+...+......... .......++..+++|+.+ ..+.+
T Consensus 215 ~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (346)
T TIGR03547 215 RTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEV 294 (346)
T ss_pred cchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeE
Q ss_pred EECCCCeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002591 775 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 811 (903)
Q Consensus 775 ~D~~t~~~~~~l~~h~~~V~sl~~spdg~~lasgs~d 811 (903)
||.++.+-...-.-........+..-++++++.|+.+
T Consensus 295 yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 295 YALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccC
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 903 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-27 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 7e-20 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 9e-20 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 4e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 9e-20 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 4e-07 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 9e-20 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 9e-20 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 5e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 9e-20 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-19 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 5e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-19 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-19 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-19 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-19 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-19 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-19 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 4e-19 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 8e-06 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 6e-19 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 8e-06 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 6e-18 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 3e-17 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 4e-17 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 5e-17 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 7e-17 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 4e-16 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-14 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-07 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 5e-14 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 5e-14 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 4e-06 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 6e-14 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 7e-14 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 3e-04 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 9e-14 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 3e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 9e-14 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 3e-04 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-13 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 6e-08 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 5e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 4e-13 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 5e-04 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 2e-11 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-11 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-11 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-11 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 4e-09 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-11 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 2e-11 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-11 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-11 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 2e-10 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 1e-05 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-10 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-06 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 2e-09 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 6e-04 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-09 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 6e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-09 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 6e-04 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 2e-09 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 9e-04 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 2e-09 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 6e-04 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 2e-09 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 2e-08 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 3e-09 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 5e-07 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 4e-09 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-07 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 4e-09 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-07 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 4e-09 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 3e-07 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-08 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-06 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 4e-08 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 3e-05 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 5e-08 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 6e-04 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 6e-08 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 7e-08 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 4e-06 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 1e-07 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 1e-07 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 1e-07 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 4e-07 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 6e-07 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 6e-07 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 1e-06 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-06 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-06 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 6e-06 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 2e-04 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 8e-06 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 2e-05 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-05 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 3e-05 | ||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 6e-05 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 2e-04 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 2e-04 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 8e-04 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 9e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 903 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-35 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-32 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-22 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-21 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-27 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-16 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-23 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-17 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-20 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-10 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 7e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-20 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-16 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-18 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-15 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-17 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-12 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.003 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-16 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-16 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-16 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-16 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-15 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-14 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 8e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-14 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-13 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-12 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-12 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-12 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-11 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-12 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-07 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-10 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-10 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-10 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 3e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 5e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 6e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 5e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 8e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 5e-06 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 5e-06 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-04 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 8e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-09 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-07 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 6e-09 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 7e-09 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 8e-09 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 4e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 3e-07 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-07 | |
| d1od5a1 | 245 | b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea | 1e-06 | |
| d1od5a1 | 245 | b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea | 0.003 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 2e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 8e-06 | |
| g1pnb.1 | 106 | a.52.1.3 (A:,B:) Napin BNIb {Rape (Brassica napus) | 2e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 4e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-04 | |
| d1fxza1 | 239 | b.82.1.2 (A:10-248) Seed storage 7S protein {Soybe | 4e-04 | |
| d1bf5a1 | 181 | a.47.1.1 (A:136-316) STAT-1, coiled coil domain {H | 8e-04 | |
| d1bf5a1 | 181 | a.47.1.1 (A:136-316) STAT-1, coiled coil domain {H | 0.001 | |
| d1psya_ | 125 | a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricin | 9e-04 | |
| d1psya_ | 125 | a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricin | 0.002 | |
| d2crua1 | 105 | a.5.6.1 (A:8-112) Programmed cell death protein 5 | 9e-04 | |
| d2oeea1 | 110 | a.281.1.2 (A:3-112) Hypothetical protein YheA {Bac | 0.003 | |
| d1g9la_ | 144 | a.144.1.1 (A:) poly(A) binding protein {Human (Hom | 0.004 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 134 bits (338), Expect = 4e-35
Identities = 59/340 (17%), Positives = 122/340 (35%), Gaps = 11/340 (3%)
Query: 568 ELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVI 627
+LR + ++L + D ++ D V + + ++R +K+
Sbjct: 6 QLRQEAEQLKN--QIRDARKA---CADATLSQITNNIDPVGR-IQMRTRRTLRGHLAKIY 59
Query: 628 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 687
H+ +D +LL + D K ++W + T + SS + ++PS +A D
Sbjct: 60 AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 119
Query: 688 TVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 744
+++ + R GH+ + F + + S D + + T
Sbjct: 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 179
Query: 745 RVFKGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE 803
G R + + + D CR + GH I+++C+ P+G
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239
Query: 804 LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 863
A+ S+D+ + + S F + LL + +W+
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 864 -SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902
++ L H+ ++ L V+ + VA+ S D F+K+W
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.4 bits (181), Expect = 8e-15
Identities = 15/70 (21%), Positives = 29/70 (41%)
Query: 624 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 683
+ FS G+LL G D +W L H + ++ + + +AT
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 684 SFDKTVRVWD 693
S+D +++W+
Sbjct: 331 SWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 73.6 bits (179), Expect = 1e-14
Identities = 36/221 (16%), Positives = 68/221 (30%), Gaps = 43/221 (19%)
Query: 643 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 702
D LW +T + T H+ + + +P + + D + ++WD G +
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQ 220
Query: 703 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGR 762
TF GH + + ++ F PN + + D R + +
Sbjct: 221 TFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQEL------------------ 261
Query: 763 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 821
S I SV + SG LL + +D + VW
Sbjct: 262 -------------------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 822 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 862
+ L+ + N+ ++ L++WN
Sbjct: 303 ---DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.6 bits (96), Expect = 3e-04
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 651
A + ++V C + DG +ATG D +W+
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 127 bits (318), Expect = 1e-32
Identities = 74/315 (23%), Positives = 125/315 (39%), Gaps = 30/315 (9%)
Query: 614 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 673
E ++ S V F ++ + D +W +T + L+ H+ + D+ F
Sbjct: 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67
Query: 674 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 733
S LA+ S D T+++WD RT GH +V S+ PN D I S D I
Sbjct: 68 DHSGKLLASCSADMTIKLWDFQGFECI-RTMHGHDHNVSSVSIMPN-GDHIVSASRDKTI 125
Query: 734 RYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 790
+ W + G C + F G +R + + + V + T+ C+ L+ H
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185
Query: 791 KPIDSVCW--------------------DPSGELLASVSED-SVRVWTVGSGSEGECVHE 829
++ + W G L S S D ++++W S G C+
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW---DVSTGMCLMT 242
Query: 830 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG 888
L + N +FH +L ++L +W+ + M TL AHE + +L
Sbjct: 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 302
Query: 889 YVASASHDKFVKLWK 903
YV + S D+ VK+W+
Sbjct: 303 YVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 96.0 bits (237), Expect = 5e-22
Identities = 43/226 (19%), Positives = 72/226 (31%), Gaps = 62/226 (27%)
Query: 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 671
+ + V + DG L+A+ +D+ +W T + K L EH ++ +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 672 RF--------------------SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV 711
+ P L + S DKT+++WD G L T +GH V
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV 250
Query: 712 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 771
+ FH I SC D +R W N C +
Sbjct: 251 RGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLN----------------------- 286
Query: 772 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 816
H + S+ + + + + S D +V+VW
Sbjct: 287 ----------------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.4 bits (233), Expect = 1e-21
Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 3/164 (1%)
Query: 574 DRLVEDGSLDDNVESFLSHDDTDPRD-AGGRGMDVSQGFSFKEANSVRASTSKVICCHFS 632
L+ S D V ++ + R + ++ + + S + +
Sbjct: 155 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214
Query: 633 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 692
G L +G DK +W T L H + + V F + + + DKT+RVW
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274
Query: 693 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 736
D N ++T H V SLDFH + + D ++ W
Sbjct: 275 DYKN-KRCMKTLNAHEHFVTSLDFHKT-APYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.3 bits (186), Expect = 2e-15
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 671
+ ++ + V F S GK + + DK +W + L H +T +
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295
Query: 672 RFSPSMPRLATSSFDKTVRVWD 693
F + P + T S D+TV+VW+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.5 bits (93), Expect = 7e-04
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 859 ELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902
+ W + L+ H + + + SAS D +K+W
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 44
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 112 bits (280), Expect = 4e-27
Identities = 72/324 (22%), Positives = 115/324 (35%), Gaps = 44/324 (13%)
Query: 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE------------------H 664
TS V C FS+DG+ LATG +K ++ L +
Sbjct: 62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120
Query: 665 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLI 724
I V FSP LAT + D+ +R+WD +N + F +
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180
Query: 725 CSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACR 783
S D I S T + G + P G+Y+AA + V + D+ET
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240
Query: 784 LSLQ-------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE---------GEC 826
L GH + SV + G+ + S S D SV++W + + + G C
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300
Query: 827 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM-SENKTMTLTAHEGLIAALAVST 885
+ + S +L + + W+ S N + L H + ++AV+
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360
Query: 886 ------ETGYVASASHDKFVKLWK 903
E A+ S D ++WK
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.8 bits (200), Expect = 5e-17
Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 53/210 (25%)
Query: 628 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSMPRL 680
DGK +A G D+ +W ++T L+ H + V F+ +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269
Query: 681 ATSSFDKTVRVWDADNPG-----------YSLRTFMGHSASVMSLDFHPNKDDLICSCDG 729
+ S D++V++W+ N T++GH V+S+ N D+ I S
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSK 328
Query: 730 DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH 789
D + +W +G+ + +G H ++ A N
Sbjct: 329 DRGVLFWDKKSGNPLLMLQG---------HRNSVISVAVAN------------------- 360
Query: 790 TKPIDSVCWDPSGELLASVSED-SVRVWTV 818
P + A+ S D R+W
Sbjct: 361 -----GSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.6 bits (197), Expect = 1e-16
Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 18/141 (12%)
Query: 615 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE----------- 663
E S V F+ DG+ + +G D+ LW+ +K++ +
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305
Query: 664 -HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--- 719
H + V + + + + S D+ V WD + G L GH SV+S+
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS-GNPLLMLQGHRNSVISVAVANGSSL 364
Query: 720 --KDDLICSCDGDGEIRYWSI 738
+ ++ + GD + R W
Sbjct: 365 GPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.2 bits (144), Expect = 5e-10
Identities = 36/232 (15%), Positives = 79/232 (34%), Gaps = 27/232 (11%)
Query: 674 SPSMPRLATSSFDKTVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGD 730
S S+P + +++ P L + H++ V + F + + L C+
Sbjct: 25 SQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKT 84
Query: 731 GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 790
+ + +++GS +A + +L S
Sbjct: 85 --TQVYRVSDGSLVARLSDDSAANKDPENL---------------------NTSSSPSSD 121
Query: 791 KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 850
I SVC+ P G+ LA+ +ED + + + + + + F +
Sbjct: 122 LYIRSVCFSPDGKFLATGAEDRL-IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180
Query: 851 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902
G + ++TL+ +G+ + Y+A+ S D+ V++W
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 232
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (250), Expect = 1e-23
Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 18/295 (6%)
Query: 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 671
K ++ VI C G + +G D +W T K L H+ +
Sbjct: 5 ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 63
Query: 672 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 731
+ ++ + + ++ + + S D
Sbjct: 64 QMRDNII------ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 732 EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQGHT 790
+R W I G C V G A +R + GR + + A +V + D ET+ C +LQGHT
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177
Query: 791 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 849
+ S+ +D G + S S D S+RVW V G C+H L+ + + L
Sbjct: 178 NRVYSLQFD--GIHVVSGSLDTSIRVWDV---ETGNCIHTLTGHQSLTSGMELKDNI--L 230
Query: 850 LVIGCYQSLELWNMSENKTMTLTAHEGL--IAALAVSTETGYVASASHDKFVKLW 902
+ ++++W++ + + A + +V ++S D VKLW
Sbjct: 231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.6 bits (202), Expect = 2e-17
Identities = 35/203 (17%), Positives = 76/203 (37%), Gaps = 20/203 (9%)
Query: 628 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 687
DG+ + +G +D +W +T L+ H++ + ++F + + S D
Sbjct: 140 VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDT 197
Query: 688 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 747
++RVWD + + T GH + ++ N ++ S + D ++ W I G C +
Sbjct: 198 SIRVWDVETG-NCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTL 253
Query: 748 KGGTA----QMRFQPHLGRYLAAAAENVVSILDAETQAC-----RLSLQGHTKPIDSVCW 798
+G Q + + ++ + V + D +T L G + +
Sbjct: 254 QGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313
Query: 799 DPSGELLASVSED-----SVRVW 816
+ + A S + + V
Sbjct: 314 SNTKLVCAVGSRNGTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.1 bits (136), Expect = 3e-09
Identities = 45/254 (17%), Positives = 81/254 (31%), Gaps = 53/254 (20%)
Query: 692 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 751
W S + GH V++ + I S D ++ WS G C R G T
Sbjct: 1 WRR-GELKSPKVLKGHDDHVITC-LQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57
Query: 752 AQ-----------------------------------------MRFQPHLGRYLAAAAEN 770
H R ++ + +
Sbjct: 58 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 771 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL 830
+ + D ET C L GH + +++ + V+VW C+H L
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAV-RCVQYDGRRVVSGAYDFMVKVWDP---ETETCLHTL 173
Query: 831 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLTAHEGLIAALAVSTETGY 889
+ N+ +S F + ++ S+ +W++ TLT H+ L + + +
Sbjct: 174 QGHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNI 229
Query: 890 VASASHDKFVKLWK 903
+ S + D VK+W
Sbjct: 230 LVSGNADSTVKIWD 243
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (133), Expect = 9e-09
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 10/124 (8%)
Query: 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATS 683
+ + +L +G D +W T + L+ + + V TS
Sbjct: 217 QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 276
Query: 684 SFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLIC-SCDG--DGEIRY 735
S D TV++WD G +R + G V + K S +G + ++
Sbjct: 277 SDDGTVKLWDLKT-GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV 335
Query: 736 WSIN 739
+
Sbjct: 336 LDFD 339
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.9 bits (221), Expect = 3e-20
Identities = 49/301 (16%), Positives = 101/301 (33%), Gaps = 33/301 (10%)
Query: 618 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 677
R+ TSK + C D + + +G D +W +TL+ K L H+ + +++ +
Sbjct: 9 HCRSETSKGVYC-LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67
Query: 678 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 737
+ + ++ + ++ +C D I W
Sbjct: 68 I------ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 738 INNGSCTRVFKGG----TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI 793
+ + + + + A ++A+ + + + + T +L GH + I
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181
Query: 794 DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 852
C L+ S S D ++R+W + EC L +V
Sbjct: 182 A--CLQYRDRLVVSGSSDNTIRLWDI------ECGACLRVLEGHEELVRCIRFDNKRIVS 233
Query: 853 GCYQ-SLELWNMSENKTM----------TLTAHEGLIAALAVSTETGYVASASHDKFVKL 901
G Y +++W++ TL H G + L + S+SHD + +
Sbjct: 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILI 291
Query: 902 W 902
W
Sbjct: 292 W 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 1e-10
Identities = 39/204 (19%), Positives = 71/204 (34%), Gaps = 8/204 (3%)
Query: 701 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 760
+ S V L + I S D I+ W N C R+ G T + +
Sbjct: 8 IHCRSETSKGVYCLQYDDQ---KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
Query: 761 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 820
R + + + + L+ H +G ++ + S+ VW + S
Sbjct: 65 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124
Query: 821 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLTAHEGLIA 879
++ L + + F Y ++ +++++WN S + TL H+ IA
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 182
Query: 880 ALAVSTETGYVASASHDKFVKLWK 903
L V S S D ++LW
Sbjct: 183 CLQYRDR--LVVSGSSDNTIRLWD 204
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 7e-07
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 627 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN---------LEEHSSLITDVRFSPSM 677
+ D K + +G +D K +W L EHS + ++F
Sbjct: 220 LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF- 278
Query: 678 PRLATSSFDKTVRVWD 693
++ +SS D T+ +WD
Sbjct: 279 -QIVSSSHDDTILIWD 293
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.5 bits (220), Expect = 9e-20
Identities = 45/288 (15%), Positives = 86/288 (29%), Gaps = 11/288 (3%)
Query: 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-----NLEEHSSLITDVRFSPSM 677
V S+ + + TGG +W +K+ + + I + P
Sbjct: 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 678 PRLATSSFDKTVRVWDADNPGYSLRTFMGHS--ASVMSLDFHPNKDDLICSCDGDGEIRY 735
L T+ +WD P ++ + S A +K C DG+ +
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 736 WSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDS 795
A + G L + + +L T I S
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229
Query: 796 VCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 855
+ + P+GE LA E S ++L + + S F + G
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLH---VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286
Query: 856 QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903
L W ++ + + + +S + Y+ + S DK +++
Sbjct: 287 NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.9 bits (195), Expect = 1e-16
Identities = 43/283 (15%), Positives = 87/283 (30%), Gaps = 14/283 (4%)
Query: 630 HFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 688
H ++DG++ D + L H ++ V S + T
Sbjct: 16 HVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTGG-KGC 73
Query: 689 VRVWDADNPGY----SLRTFMGHSASVMSLDFHPNKDDLICS----CDGDGEIRYWSINN 740
V+VWD +PG S + + S P+ LI ++ +
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 741 GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 800
+ + P + ++ +++ D Q QGHT +
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193
Query: 801 SGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 860
G L + D+ + ++ S + PT L V ++E+
Sbjct: 194 DGTKLWTGGLDN---TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250
Query: 861 WNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903
++++ L HE + +L + + S D + W+
Sbjct: 251 LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.9 bits (164), Expect = 1e-12
Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 624 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 683
S++ + G+ LA G + H + K L H S + ++F+ ++
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNK-PDKYQLHLHESCVLSLKFAYCGKWFVST 283
Query: 684 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 738
D + W G S+ S+SV+S D + D I + GD + + +
Sbjct: 284 GKDNLLNAWRTPY-GASIFQS-KESSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 86.5 bits (212), Expect = 1e-18
Identities = 38/279 (13%), Positives = 78/279 (27%), Gaps = 21/279 (7%)
Query: 626 VICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATS 683
+ C ++ D +A ++ + ++ L+EH+ +T V ++P R+ T
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 684 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 743
D+ VW + + + G I +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 744 TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE 803
V K +R ++L + + L + + +
Sbjct: 130 WWVCKHIKKPIRS----------------TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 173
Query: 804 LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 863
V E GE + E S + H F + + ++ L +
Sbjct: 174 ---EVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230
Query: 864 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902
+ + A E L + +A HD F L+
Sbjct: 231 DKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLF 269
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 76.1 bits (185), Expect = 4e-15
Identities = 39/323 (12%), Positives = 98/323 (30%), Gaps = 32/323 (9%)
Query: 609 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLW--HTDTLKSKTNLEEHSS 666
G + + + ++ +V ++ D + T G D+ A +W T K + +
Sbjct: 37 SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR 96
Query: 667 LITDVRFSPSMPRLATSSFDKTVRVWD--ADNPGYSLRTFMGHSASVMSLDFHPNKDDLI 724
VR++P+ + A S + + + +N + + S + L+
Sbjct: 97 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 156
Query: 725 CSCDGDGEIRYWSINNGSCTRV---------------------FKGGTAQMRFQPHLGRY 763
+ D + R +S G + F + R
Sbjct: 157 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 216
Query: 764 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE 823
+ ++ V + DA+ + +L T P+ +V + L+A+ + ++T S +
Sbjct: 217 AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA- 275
Query: 824 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAV 883
+ + + + H+ ++ ++V
Sbjct: 276 --GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISV 333
Query: 884 STETGY----VASASHDKFVKLW 902
+ + D + +W
Sbjct: 334 LSGGKAKCSQFCTTGMDGGMSIW 356
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.1 bits (154), Expect = 2e-11
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 6/118 (5%)
Query: 628 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 687
F ++ L+A G HD VL+ D+ K + + R + DK
Sbjct: 248 AVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK 306
Query: 688 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGS 742
+ G L + H SV + K C+ DG + W + +
Sbjct: 307 KASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.4 bits (121), Expect = 3e-07
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 787 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 845
+PI W+ +A + V ++ SG++ VHEL + + + P
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPD 62
Query: 846 YPSLLVIGCYQSLELWNM 863
++ G ++ +W +
Sbjct: 63 SNRIVTCGTDRNAYVWTL 80
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.1 bits (102), Expect = 6e-05
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 5/78 (6%)
Query: 631 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP----SMPRLATSSFD 686
DKKA H + ++ + + T+ D
Sbjct: 292 QRGLTARERFQNLDKKASSE-GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD 350
Query: 687 KTVRVWDADNPGYSLRTF 704
+ +WD + +L+
Sbjct: 351 GGMSIWDVRSLESALKDL 368
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 82.7 bits (202), Expect = 1e-17
Identities = 50/285 (17%), Positives = 92/285 (32%), Gaps = 6/285 (2%)
Query: 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSMPRLA 681
+ S+DGK L + + W T S + + H+++IT ++ S L
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT-TSKGDLF 70
Query: 682 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 741
T S+D ++V A G + + S L + D I I +S
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
Query: 742 SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 801
+ + + + V + + H I SV + +
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190
Query: 802 GELLASVS-EDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 860
G L + V ++V + E + + + K + P L S+ +
Sbjct: 191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 250
Query: 861 WNM---SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902
WNM S++ + AH + + SA D +K W
Sbjct: 251 WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 65.0 bits (156), Expect = 6e-12
Identities = 29/247 (11%), Positives = 63/247 (25%), Gaps = 8/247 (3%)
Query: 661 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPN 719
H+ IT + S L ++ + + WD G S R F H+ + +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSK 66
Query: 720 KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET 779
D + + D ++ L
Sbjct: 67 GD--LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124
Query: 780 QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHS 839
+ + S + + +V +V + + + S
Sbjct: 125 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 184
Query: 840 CVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVST----ETGYVASASH 895
F L+ + + ++++ N + T A + +A+ S
Sbjct: 185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244
Query: 896 DKFVKLW 902
D V +W
Sbjct: 245 DNSVIVW 251
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.6 bits (129), Expect = 2e-08
Identities = 20/163 (12%), Positives = 39/163 (23%), Gaps = 39/163 (23%)
Query: 701 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 760
+ GH+ ++ +L + + S D +G I W I+ G RVF
Sbjct: 5 DQVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPD----------- 52
Query: 761 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 820
H I + G+L +D ++V G
Sbjct: 53 ---------------------------VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG 85
Query: 821 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 863
+ ++ + +
Sbjct: 86 SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.5 bits (108), Expect = 8e-06
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 628 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSF 685
C +S D LATG D ++W+ + H+ + + + ++
Sbjct: 229 CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288
Query: 686 DKTVRVWD 693
D ++ W+
Sbjct: 289 DSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.4 bits (87), Expect = 0.003
Identities = 13/107 (12%), Positives = 33/107 (30%), Gaps = 5/107 (4%)
Query: 716 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 775
D + + + + A + + P R + +N V +
Sbjct: 192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 251
Query: 776 DAETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTV 818
+ + + ++SV W + + S +D +++ W V
Sbjct: 252 NMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNV 297
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.3 bits (196), Expect = 1e-16
Identities = 35/307 (11%), Positives = 70/307 (22%), Gaps = 29/307 (9%)
Query: 626 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRLAT 682
+ LL D ++ D +L + + F +
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
Query: 683 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 742
+ + S + + A++ DD + + DG I N
Sbjct: 74 VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133
Query: 743 CTRVFKGGT---------AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT--- 790
+ + R + + V +
Sbjct: 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193
Query: 791 -KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------------GECVHELSCNGNK 836
+ D E A S D V V + + +
Sbjct: 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253
Query: 837 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 896
+S F P + L G + WN+ K + A + + ++ + A+ D
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSD 313
Query: 897 KFVKLWK 903
K
Sbjct: 314 DTFKTNA 320
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 78.4 bits (191), Expect = 4e-16
Identities = 33/272 (12%), Positives = 67/272 (24%), Gaps = 30/272 (11%)
Query: 661 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHP 718
+ I+D++ PS L +S+D ++ V+ D L + + ++ +F
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 719 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVV------ 772
N D I GEI + + A +
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126
Query: 773 ----SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGECV 827
+ D L+ D + L +S V+ + + +
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186
Query: 828 HELSCNGNKFHSCVFHPTYPSLLVIGCY-----------------QSLELWNMSENKTMT 870
E S + P S +
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246
Query: 871 LTAHEGLIAALAVSTETGYVASASHDKFVKLW 902
T + ++ S ++ +A D + W
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 4e-08
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 628 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 687
FS K L T G D W+ T K N + + + V+ + S L ++ D
Sbjct: 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILCLATSDD 314
Query: 688 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 719
T + A + +T +++S+ + + N
Sbjct: 315 TFKTNAAID-----QTIELNASSIYIIFDYEN 341
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 1e-05
Identities = 11/169 (6%), Positives = 33/169 (19%), Gaps = 37/169 (21%)
Query: 701 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 760
++ + + P+ L+ DG + + + +
Sbjct: 4 VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQ----------- 51
Query: 761 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 820
+ P+ + + +L V + V
Sbjct: 52 -------------------------SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86
Query: 821 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 869
+ N + L+ +E+ +
Sbjct: 87 IGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG 135
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.9 bits (195), Expect = 2e-16
Identities = 45/310 (14%), Positives = 93/310 (30%), Gaps = 33/310 (10%)
Query: 618 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 677
++R + VI C + + TG DK ++ + K L H + ++++
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65
Query: 678 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 737
L + S D+TVRVWD + +S I + D + W
Sbjct: 66 -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124
Query: 738 INNGSCTRVFKGGTAQ------------------------MRFQPHLGRYLAAAAENVVS 773
+ S H ++ + +N +
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 184
Query: 774 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 832
+ D C L GHT I S +D + S S D ++R+W + +G + +
Sbjct: 185 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 244
Query: 833 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 892
V + + + + H ++A+ + +
Sbjct: 245 LVGLLRLSDKFL------VSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 298
Query: 893 ASHDKFVKLW 902
+ + ++
Sbjct: 299 SGSENQFNIY 308
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.1 bits (133), Expect = 8e-09
Identities = 6/72 (8%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 668 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSC 727
++ + + S + +++ + + + + S++F L+ +
Sbjct: 284 LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT--LVAAV 341
Query: 728 DGDGEIRYWSIN 739
+ DG+ ++
Sbjct: 342 EKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 6e-08
Identities = 18/126 (14%), Positives = 44/126 (34%), Gaps = 11/126 (8%)
Query: 783 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 841
R +L+GH + + C + + ++D +RV+ + + + +LS + +
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSIN---KKFLLQLSGHDGGVWALK 60
Query: 842 FHPTYPSLLVIG----CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 897
+ +LV G + ++ + Y+ + S D
Sbjct: 61 YAHG--GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118
Query: 898 FVKLWK 903
+ +WK
Sbjct: 119 TLHVWK 124
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 4e-07
Identities = 42/250 (16%), Positives = 77/250 (30%), Gaps = 10/250 (4%)
Query: 619 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 678
V S + + G + L ++ + + VR
Sbjct: 112 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171
Query: 679 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 738
+ S + L GH+ + S + + I + D IR W +
Sbjct: 172 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM-DTTIRIWDL 230
Query: 739 NNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 798
NG +G TA + ++L +AA + R HT +
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290
Query: 799 DPSGELLASVSEDSVRVWTVGSGSEGECVH-ELSCNGNKFHSCVFHPTYPSLLVIGCYQS 857
S +L S SE+ ++ + S G+ VH + + ++ S F L+
Sbjct: 291 YVSDNILVSGSENQFNIYNLRS---GKLVHANILKDADQIWSVNFKGKT--LVAAVEKDG 345
Query: 858 ---LELWNMS 864
LE+ + S
Sbjct: 346 QSFLEILDFS 355
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 78.8 bits (192), Expect = 2e-16
Identities = 48/291 (16%), Positives = 95/291 (32%), Gaps = 14/291 (4%)
Query: 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS 684
+ + G + + +L EHS T + SPS A+
Sbjct: 19 TAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 685 FDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 743
VR+WD + L+T + S V + + + +G + + +
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137
Query: 744 TRVFKGGTA-----QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 798
+ G A R ++ + +N V+I + + + HTK + SV +
Sbjct: 138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197
Query: 799 DPSGELLASVSEDSVRVWTVGSGSEGECVH-----ELSCNGNKFHSCVFHPTYPSLLVIG 853
+P G L AS D V G V + + + P +
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257
Query: 854 CYQSLELWNMSENKTM-TLTAHEGL-IAALAVSTETGYVASASHDKFVKLW 902
+++++WN++ K T+ + L + + S S + F+
Sbjct: 258 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.4 bits (134), Expect = 5e-09
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 628 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSSFD 686
+S DG +A+ DK +W+ TLK + + + + + + L + S +
Sbjct: 243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 302
Query: 687 KTVRVWDAD 695
+ + +
Sbjct: 303 GFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.3 bits (118), Expect = 5e-07
Identities = 32/256 (12%), Positives = 69/256 (26%), Gaps = 18/256 (7%)
Query: 623 TSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 680
+ + S G A+G + T KT + S + D+ + R+
Sbjct: 58 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 117
Query: 681 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 740
A + + + A M+ D
Sbjct: 118 AAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP 177
Query: 741 G----SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET-------QACRLSLQGH 789
S +R+ P + + + + + + + L H
Sbjct: 178 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 237
Query: 790 TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYP 847
+ + + W P G +AS S D ++++W V + + + + T
Sbjct: 238 SGSVFGLTWSPDGTKIASASADKTIKIWNVAT---LKVEKTIPVGTRIEDQQLGIIWTKQ 294
Query: 848 SLLVIGCYQSLELWNM 863
+L+ I + N
Sbjct: 295 ALVSISANGFINFVNP 310
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.3 bits (188), Expect = 1e-15
Identities = 34/307 (11%), Positives = 81/307 (26%), Gaps = 27/307 (8%)
Query: 624 SKVICCHFSSDGKLLATGGHDKKAV----LWHTDTLKSKTNLEEHSSLITDVRFSPSMP- 678
+ + +A V + SS++T V+FSP
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 679 -RLATSSFDKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDG 729
L + V VW F + + + + + +
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137
Query: 730 DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-------ENVVSILDAETQAC 782
D + S ++G+ G + ++ + + A
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197
Query: 783 RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV--WTVGSGSEGECVHELSCNGNKFHSC 840
+ + V + P ++ + SG + + +
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257
Query: 841 VFHPTYPSLLVIGCYQSLELWNMSENK---TMTLTAHEGLIAALAVS-TETGYVASASHD 896
+ +G ++ +W+++ +K TL + + V T G + S S D
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317
Query: 897 KFVKLWK 903
+ ++
Sbjct: 318 GTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 2e-08
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 679 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASV--MSLDFHPNKDDLICSCDGDGEIRYW 736
+ AT D T+RVWD ++ + + + + I S DG + ++
Sbjct: 265 KFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Query: 737 SI 738
+
Sbjct: 324 EL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.6 bits (124), Expect = 1e-07
Identities = 30/266 (11%), Positives = 65/266 (24%), Gaps = 28/266 (10%)
Query: 623 TSKVICCHFS--SDGKLLATGGHDKKAVLWHTDT--------LKSKTNLEEHSSLITDVR 672
+S V FS + L +G K ++W + K+ + + I+D+
Sbjct: 63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122
Query: 673 FSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 730
+ RL D D+ + D
Sbjct: 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 182
Query: 731 GEIRYWSINNGSC---------TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 781
+ Y + + + + E
Sbjct: 183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242
Query: 782 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF--H 838
Q + + A+V D ++RVW V + +CV + + + +
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT---SKCVQKWTLDKQQLGNQ 299
Query: 839 SCVFHPTYPSLLVIGCY-QSLELWNM 863
T ++ +L + +
Sbjct: 300 QVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 3e-04
Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 16/179 (8%)
Query: 707 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKGGTAQ----MRFQPHL 760
L + P + + C +R + F G + ++F P
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 761 -GRYLAAAAEN-VVSILDAETQACRLSL--------QGHTKPIDSVCWDPSGELLASVSE 810
+YL + E+ V + S+ Q PI + WD G L V E
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 811 DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 869
S G + E+S + + ++C + P + ++
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 194
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.7 bits (179), Expect = 2e-14
Identities = 37/316 (11%), Positives = 81/316 (25%), Gaps = 71/316 (22%)
Query: 655 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-----------PGYSLRT 703
+ + + H + I V + S D ++VWD + ++
Sbjct: 4 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61
Query: 704 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM--------- 754
+ H + +++ + L+ + G++ ++ I T+ +
Sbjct: 62 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121
Query: 755 --------RFQPHLGRYLAAAAEN-------------------VVSILDAETQACRLSLQ 787
L L A + E Q S
Sbjct: 122 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 181
Query: 788 GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV------ 841
++ SV G L+A+ + + S E + + +
Sbjct: 182 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240
Query: 842 ---------------FHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE 886
T SL + S ++ AH + +L+ +
Sbjct: 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 300
Query: 887 TGYVASASHDKFVKLW 902
+ SA D ++ W
Sbjct: 301 GETLCSAGWDGKLRFW 316
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (142), Expect = 8e-10
Identities = 27/200 (13%), Positives = 49/200 (24%), Gaps = 28/200 (14%)
Query: 650 WHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA 709
+ + + S T V S +AT + TV++ + HS
Sbjct: 169 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 227
Query: 710 SVMSLD----FHPNKDDLICSCDGDGEIRYWSINNGSCTR-------------------V 746
S + L+ ++
Sbjct: 228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 287
Query: 747 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI----DSVCWDPSG 802
+ F +A + + D +T+ +L H I D + D G
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 347
Query: 803 ELLASVSEDSVRVWTVGSGS 822
+ LA V+ G S
Sbjct: 348 DSLAEPGVFDVKFLKKGWRS 367
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.7 bits (114), Expect = 2e-06
Identities = 22/174 (12%), Positives = 49/174 (28%), Gaps = 16/174 (9%)
Query: 574 DRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 633
L+ G + V+ + S + SV+ S +
Sbjct: 195 RGLIATGFNNGTVQISELSTLRPLYN---FESQHSMINNSNSIRSVKFSPQGSLLAIAHD 251
Query: 634 DGKLLATGGHDKKAVLW------HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 687
++ + T + ++ HSS + + F+ S L ++ +D
Sbjct: 252 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 311
Query: 688 TVRVWDADNPGYSLRTFMGHSASV----MSLDFHPNKDDLICSCDGDGEIRYWS 737
+R WD + T H + L + G ++++
Sbjct: 312 KLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDE--HGDSLAEPGVFDVKFLK 362
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 41/348 (11%), Positives = 91/348 (26%), Gaps = 38/348 (10%)
Query: 402 VVSNVGSPLPAGGHLLPRGDTDMLIKQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPA 461
V L+ + + + + ++ + ++ +
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126
Query: 462 GSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 521
+ D +S+ V+ + G ++S T N +
Sbjct: 127 WGASNDRLLSHRL-----VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 181
Query: 522 HTPGDVISMPALPH----SGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLEL-----RAD 572
S+ +G + + + L + +Q + +
Sbjct: 182 TPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241
Query: 573 MDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFS 632
L+ ++ ++ G S + + A +S V+ F+
Sbjct: 242 QGSLLAIAHDSNSFGCITLYETEFGER---IGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298
Query: 633 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS----LITDVRFSPSMPRLATSSFDKT 688
G+ L + G D K W T + T L H + LA
Sbjct: 299 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG---- 354
Query: 689 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 736
V+D R+ MG + ++ +C D IR++
Sbjct: 355 --VFDVKFLKKGWRSGMGA-----------DLNESLCCVCLDRSIRWF 389
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 73.2 bits (178), Expect = 2e-14
Identities = 20/316 (6%), Positives = 74/316 (23%), Gaps = 45/316 (14%)
Query: 631 FSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKT 688
+ + + + + + K+ + +P ++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 689 VRVWDADNPGYSLRTFMG-----HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 743
+ D D + + S+ S P+ ++ + + + +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 744 TRVFKGGTAQMRFQPHLGRY-------------LAAAAENVVSILDAETQACRLSLQGHT 790
VF A + +D +T ++L
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183
Query: 791 KP------------------------IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGEC 826
+ ++ + + ++ +V +
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243
Query: 827 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE 886
E + + + + P P+ + L +++ + K + + +A +
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKK 302
Query: 887 TGYVASASHDKFVKLW 902
+ + ++
Sbjct: 303 GDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 47.0 bits (110), Expect = 6e-06
Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 2/73 (2%)
Query: 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 682
T S G ++ A + K V F +L
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL 308
Query: 683 SSFDKTVRVWDAD 695
+ V++ D
Sbjct: 309 GGTFNDLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 45.9 bits (107), Expect = 1e-05
Identities = 16/130 (12%), Positives = 34/130 (26%), Gaps = 5/130 (3%)
Query: 626 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSS 684
F D + AT + T K+ T + L SP P
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV 270
Query: 685 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 744
+ + +D ++ + + F D + ++ ++ +
Sbjct: 271 LN-RLAKYDLKQ-RKLIKAA-NLDHTYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKV 326
Query: 745 RVFKGGTAQM 754
+ K M
Sbjct: 327 KNIKLPGGDM 336
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 69.1 bits (167), Expect = 5e-13
Identities = 21/227 (9%), Positives = 46/227 (20%), Gaps = 21/227 (9%)
Query: 617 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 676
S + + G + ++ + K E+S F
Sbjct: 131 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH-DYAPAFDAD 189
Query: 677 MPRLATSSFDKTVRVWDADN------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 730
L S+ D S P
Sbjct: 190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249
Query: 731 GEIRYWSI------NNGSCTRVFKGGTAQMRFQPH--LGRYLAAAAEN-VVSILDAETQA 781
++ S + + H Y A E V+ D +T+
Sbjct: 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR- 308
Query: 782 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 827
+ + + + + +D + + + + V
Sbjct: 309 ---KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 68.0 bits (164), Expect = 1e-12
Identities = 26/305 (8%), Positives = 62/305 (20%), Gaps = 26/305 (8%)
Query: 621 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 680
++ D K+ G + L D K E + +
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99
Query: 681 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP---------NKDDLICSCDGDG 731
A + D+ + G A +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 732 EIRYWSINNGSCTRVFKGGT-AQMRFQPHLGRYLAAAAE-NVVSILDAETQACR------ 783
I + + + + L + ++ D
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219
Query: 784 -LSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG-----SGSEGECVHELSCNGNKF 837
+ + P + D ++ + + L + +
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279
Query: 838 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 897
V L +++ KT +T + + L +S + V D
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDV---KTRKVTEVKNNLTDLRLSADRKTVMVRKDDG 336
Query: 898 FVKLW 902
+ +
Sbjct: 337 KIYTF 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 66.0 bits (159), Expect = 6e-12
Identities = 26/298 (8%), Positives = 57/298 (19%), Gaps = 30/298 (10%)
Query: 631 FS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 689
FS DG L+A + + D + I VR +
Sbjct: 10 FSPLDGDLIAFVSRGQ---AFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGD 66
Query: 690 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 749
+ D F + +V ++ N + + D +
Sbjct: 67 FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR 126
Query: 750 GTAQMRFQPHLGRYLAAAAENVVSILDAETQA-----------CRLSLQGHTKPIDSVCW 798
F A + + + +
Sbjct: 127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAF 186
Query: 799 DPSGELLASVSED-SVRVWTVGSGS----EGECVHELSCNGNKFHSCVFHPTYPSLLVIG 853
D + L +S + + + P G
Sbjct: 187 DADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR-SMTSEAG 245
Query: 854 CYQSLELWNM---------SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902
Y +++ + L + + + Y A + +
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 303
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 59.5 bits (142), Expect = 7e-10
Identities = 16/166 (9%), Positives = 36/166 (21%), Gaps = 17/166 (10%)
Query: 589 FLSHDDTDP-RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKA 647
+LS+ DP D + + G +D
Sbjct: 195 YLSYRSLDPSPDRVVLNFSFEVV---SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251
Query: 648 VLWHT-------DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 700
+ + + LE + + + + +D
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT---- 307
Query: 701 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 746
R ++ L + + DG+I + + R
Sbjct: 308 -RKVTEVKNNLTDLRLSAD-RKTVMVRKDDGKIYTFPLEKPEDERT 351
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 58.0 bits (138), Expect = 2e-09
Identities = 16/181 (8%), Positives = 41/181 (22%), Gaps = 15/181 (8%)
Query: 626 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-------LEEHSSLITDVRFSPSMP 678
F +D K L + L + + P
Sbjct: 181 DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM 240
Query: 679 RLATSSFDKT---VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDGEI 733
+D R + R + +S++ + + G +
Sbjct: 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 300
Query: 734 RYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQGHTKP 792
+ + T K +R + + + + E +++ +P
Sbjct: 301 LKYDVKTRKVT-EVKNNLTDLRLSAD-RKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP 358
Query: 793 I 793
+
Sbjct: 359 L 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 22/250 (8%), Positives = 56/250 (22%), Gaps = 21/250 (8%)
Query: 671 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 730
FSP L + D + + + + + +
Sbjct: 8 EDFSPLDGDLIAFVSRGQAFIQDVSG---TYVLKVPEPLRIRYVRRGGDTKVAFIHGTRE 64
Query: 731 GE-IRYWSINNGSCTRVFKGGT--AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 787
G+ + + G + + M + + A + +D ET + +
Sbjct: 65 GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124
Query: 788 GHTKPIDSVCWDPSGELLASVSED-------SVRVWTVGSGSEGECVHELSCNGNKFHSC 840
I + +A V EG + + + ++
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184
Query: 841 VFHPTYPSLLVIGCYQSLELWN--------MSENKTMTLTAHEGLIAALAVSTETGYVAS 892
F +L + + +K + G + + +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244
Query: 893 ASHDKFVKLW 902
+D
Sbjct: 245 GEYDLNDMYK 254
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.4 bits (157), Expect = 5e-12
Identities = 29/288 (10%), Positives = 69/288 (23%), Gaps = 56/288 (19%)
Query: 661 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 720
+ H+ IT + +P L + S+D + W + + HS ++SLD +
Sbjct: 9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKAQ 58
Query: 721 ----------------------------------DDLICSCDGDGEIRYWSINNGSCTRV 746
+ + D D I + +
Sbjct: 59 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 118
Query: 747 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 806
+ + + + ++ + + PS +A
Sbjct: 119 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA 178
Query: 807 SVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---------S 857
+ + E + + +
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238
Query: 858 LELWNMSENKT--MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903
+ ++++ L AH+ + L T + S+ D +K W
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.8 bits (153), Expect = 2e-11
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 673 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 732
+AT S D + ++ P ++ H V +L + + S D
Sbjct: 223 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADAC 280
Query: 733 IRYWSI 738
I+ W++
Sbjct: 281 IKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 2e-06
Identities = 9/128 (7%), Positives = 33/128 (25%), Gaps = 1/128 (0%)
Query: 692 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 751
+ + + S + + + +
Sbjct: 159 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 218
Query: 752 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLS-LQGHTKPIDSVCWDPSGELLASVSE 810
+ + + + I + + L H ++++ W+ L++S ++
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGAD 278
Query: 811 DSVRVWTV 818
++ W V
Sbjct: 279 ACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.8 bits (101), Expect = 5e-05
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 701 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 743
L+T GH+ + +L +P + S DG I WS ++
Sbjct: 6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ 43
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.4 bits (100), Expect = 8e-05
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 785 SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG--ECVHELSCNGNKFHSCV 841
++ GH K I ++ +P L S S D + W+ S + + L + + +S +
Sbjct: 8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSI 63
Query: 842 FHPTYPSLLVIGCYQSLELWNM 863
+ I ++ +
Sbjct: 64 SWDDTLKVNGITKHEFGSQPKV 85
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 65.6 bits (158), Expect = 6e-12
Identities = 28/305 (9%), Positives = 66/305 (21%), Gaps = 38/305 (12%)
Query: 636 KLLATGGHDKKAVLW--HTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVW 692
+ K V+ + + + +P AT + +++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 693 DADNP----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 748
D L T S+ P+ L + ++
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 749 GGTAQMRFQPHLGRYLAAAAEN-----------VVSILDAETQACRLSLQGHTKP----- 792
T R R + A + ++D E +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 793 -IDSVCWDPSGELLASVSEDSVRVWTVG----SGSEGECVHELSCNGNKFHSCVFHPTYP 847
D + E ++ + + + +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241
Query: 848 ----------SLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 897
G Y LE +++ +N ++ ++ VST+ V
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301
Query: 898 FVKLW 902
+ +
Sbjct: 302 DLAAY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 50.6 bits (119), Expect = 4e-07
Identities = 19/232 (8%), Positives = 49/232 (21%), Gaps = 28/232 (12%)
Query: 591 SHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLW 650
+ ++ ++ DG L G D +
Sbjct: 102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP 161
Query: 651 HTDTLKSK---------------------TNLEEHSSLITDVRFSPSMPRLATSSFDKTV 689
TL + + +++ +
Sbjct: 162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221
Query: 690 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 749
D + ++R S +P K + + + + + +
Sbjct: 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIKRVPL 278
Query: 750 GTA--QMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPIDSVCW 798
+ + G + A ++ DAET + + S+
Sbjct: 279 PHSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLAS 329
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 61.7 bits (149), Expect = 2e-10
Identities = 30/298 (10%), Positives = 69/298 (23%), Gaps = 29/298 (9%)
Query: 631 FSSDGK--LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 688
D + T + L T + KT L+ + + R S S L D
Sbjct: 26 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGK 84
Query: 689 VRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 744
V + D ++ + S I +
Sbjct: 85 VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144
Query: 745 RVFKGGTAQMRFQP-------------HLGRYLAAAAE--NVVSILDAETQACRLSLQGH 789
++ Q H + + ++D + +
Sbjct: 145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS 204
Query: 790 T-KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 848
+ + D S + + ++ + + EG+ V G H +
Sbjct: 205 AERFLHDGGLDGSHRYFITAANARNKLVVIDT-KEGKLVAIEDTGGQTPHPG-RGANFVH 262
Query: 849 LLVIGCYQSLELWN----MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902
+ + + + + + I + G + +H L+
Sbjct: 263 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 57.5 bits (137), Expect = 3e-09
Identities = 28/290 (9%), Positives = 71/290 (24%), Gaps = 33/290 (11%)
Query: 631 FSSDGKLLAT----------GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 680
+ DG +A G ++ TL ++E + V P M
Sbjct: 54 VADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWM--T 111
Query: 681 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH------PNKDDLICSCDGDGEIR 734
+ + KT+ + + A LD P D DG +
Sbjct: 112 SLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLA 171
Query: 735 YWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPID 794
+ + + + + + +
Sbjct: 172 KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIH------------ 219
Query: 795 SVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 854
SG+ + +++ G +++ + +
Sbjct: 220 -QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 278
Query: 855 YQSLELWNMSENKTMTLTAHEGLIAALAVST--ETGYVASASHDKFVKLW 902
+ + + + + + I ++ VS + A ++ DK + +
Sbjct: 279 SRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIH 328
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.9 bits (125), Expect = 1e-07
Identities = 22/211 (10%), Positives = 43/211 (20%), Gaps = 7/211 (3%)
Query: 514 SAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADM 573
P GT + + +
Sbjct: 146 DVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK 205
Query: 574 DRLVEDGSLDDNVESFLSHDDTD---PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCH 630
+ + + P + + G+ V +
Sbjct: 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265
Query: 631 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL--ATSSFDKT 688
+ V+ T + E I + S L A S+ DKT
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKT 324
Query: 689 VRVWDADNPGYSLRTFMGHSASVMSLDFHPN 719
+ + DA++ G LR+ +
Sbjct: 325 LYIHDAES-GEELRSVNQLGHGPQVITTADM 354
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.7 bits (122), Expect = 2e-07
Identities = 25/210 (11%), Positives = 48/210 (22%), Gaps = 28/210 (13%)
Query: 617 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 676
T+ DG L + ++ E LI +S
Sbjct: 150 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI----THTEVFHPEDEFLINHPAYSQK 205
Query: 677 MPRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPN---------------- 719
RL ++ + D + L + + + + P
Sbjct: 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265
Query: 720 ---KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA--QMRFQPHLGRYLAAAA--ENVV 772
+ D + G F+ G + L A + + +
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTL 325
Query: 773 SILDAETQACRLSLQGHTKPIDSVCWDPSG 802
I DAE+ S+ + G
Sbjct: 326 YIHDAESGEELRSVNQLGHGPQVITTADMG 355
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.9 bits (134), Expect = 6e-09
Identities = 16/108 (14%), Positives = 43/108 (39%)
Query: 64 IARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQ 123
I +T++ +E ++ Q + + Q++ +Q Q+ Q+ +Q ++
Sbjct: 192 ILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK 251
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ LL+ + Q+ +Q ++ Q + + + Q Q +
Sbjct: 252 MENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.9 bits (134), Expect = 7e-09
Identities = 13/104 (12%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
++ + E ++ R + + Q + + Q++++Q +Q+++ Q+ Q+ +
Sbjct: 193 LQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQ--MMEQKERSYQEHLKQLTE 250
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ Q ++ ++ + Q+Q+Q ++ Q++ + +
Sbjct: 251 KMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQ 294
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.5 bits (133), Expect = 8e-09
Identities = 12/88 (13%), Positives = 39/88 (44%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ + + Q + + Q++ + ++ Q+ +Q +M+ +Q +Q++
Sbjct: 210 RVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL 269
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ Q+Q+Q ++ Q+ + + Q +
Sbjct: 270 KLQEQEQLLKEGFQKESRIMKNEIQDLQ 297
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.6 bits (128), Expect = 4e-08
Identities = 13/122 (10%), Positives = 42/122 (34%), Gaps = 5/122 (4%)
Query: 56 WSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQ-----QQSQQP 110
+ + T+ + + I+ + + Q + + Q +Q
Sbjct: 178 LQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQK 237
Query: 111 PHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q+ +Q ++++ ++ L + ++ + Q Q+Q ++ + + Q Q
Sbjct: 238 ERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQ 297
Query: 171 RR 172
+
Sbjct: 298 TK 299
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (121), Expect = 3e-07
Identities = 14/102 (13%), Positives = 45/102 (44%)
Query: 54 EWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQ 113
+ + I K AS ++ + +Q +Q+++ Q+ +Q +++ +
Sbjct: 196 DQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEND 255
Query: 114 QQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
+ Q ++Q++ L ++ ++ ++ Q + + + + Q Q
Sbjct: 256 RVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQ 297
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.9 bits (123), Expect = 2e-07
Identities = 25/319 (7%), Positives = 71/319 (22%), Gaps = 50/319 (15%)
Query: 631 FSSDGK---LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM---------- 677
+ + + W + T + ++ S
Sbjct: 27 PGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSF 86
Query: 678 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM-------SLDFHPNKDDLICSCDGD 730
R A V V+D + A + + L+ G
Sbjct: 87 ARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS 145
Query: 731 GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS----- 785
S+ S ++ K + + + ++ D
Sbjct: 146 SAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205
Query: 786 -LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 844
+ + G L+ +V+ + + + + N + + F
Sbjct: 206 CTGAQNCSSQAAQANYPGMLVWAVASS-ILQGDIPAAG-ATMKAAIDGNESGRKADNFRS 263
Query: 845 TYPSLLVIGCYQSLELWNMSENKTMTLTA-------------------HEGLIAALAVST 885
++ + E+ L A + A+ +
Sbjct: 264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ 323
Query: 886 --ETGYVASASHDKFVKLW 902
+ A+++ + + ++
Sbjct: 324 DGASDNYANSAGTEVLDIY 342
|
| >d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Seed storage 7S protein species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]
Score = 48.3 bits (115), Expect = 1e-06
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 28/122 (22%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ-----------------QQQQLQMQQ 129
E ++ QQQ ++ + QQ Q HQ+ + + + +
Sbjct: 80 PETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAIS 139
Query: 130 ILLQRHAQQQQQ-----------HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
+L + Q +H + QQQQQ ++Q Q QQQ +G +L
Sbjct: 140 LLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVL 199
Query: 179 NG 180
+G
Sbjct: 200 SG 201
|
| >d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Seed storage 7S protein species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]
Score = 37.9 bits (88), Expect = 0.003
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 62 IFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
I + T+ ++++ + L + + + QQQQQQ+ +Q HQQQ+++
Sbjct: 138 ISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGG 196
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 48.7 bits (114), Expect = 2e-06
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 682 TSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 740
S + + VW+ ++ G +L + V + P+K L + + + I
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68
Query: 741 GSCTRVF 747
F
Sbjct: 69 DDGALTF 75
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 46.9 bits (110), Expect = 8e-06
Identities = 31/314 (9%), Positives = 67/314 (21%), Gaps = 44/314 (14%)
Query: 631 FSSDGK--LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 688
D T + L D+ K ++ + + R S S L D
Sbjct: 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDAR 84
Query: 689 VRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 744
+ + D ++ + + S I +
Sbjct: 85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144
Query: 745 RVFKGGTAQ---MRFQPHLGRYLAAAAEN-------------VVSILDAETQACRLSLQG 788
++ + P A+ V+ + + ++ G
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG 204
Query: 789 HTKPIDSVCWDPSGELLASV-------------SEDSVRVWTVGSGSEGECVHELSCNGN 835
+ WD S + + VG
Sbjct: 205 AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY 264
Query: 836 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVA---- 891
H S+ +IG + K L G + ++ ++
Sbjct: 265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWK-KVAELQGQGGGSLFIKTHPKSSHLYVDTT 323
Query: 892 ---SASHDKFVKLW 902
A + V ++
Sbjct: 324 FNPDARISQSVAVF 337
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 41.0 bits (94), Expect = 4e-04
Identities = 28/267 (10%), Positives = 70/267 (26%), Gaps = 6/267 (2%)
Query: 640 TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPG 698
+ + K + S+ SP ++ ++ V + D
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTAT-N 64
Query: 699 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQP 758
+ T S+ K + + + +N V G +
Sbjct: 65 NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124
Query: 759 HLGRYL--AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVW 816
G+ L + VS+++ T+A ++ P ++ + +
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184
Query: 817 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG 876
+ ++ + V + ++ + + NK
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244
Query: 877 LIAALAVSTETGYV-ASASHDKFVKLW 902
A +AV+ + V + S V +
Sbjct: 245 DPAGIAVTPDGKKVYVALSFCNTVSVI 271
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 40.6 bits (93), Expect = 5e-04
Identities = 14/109 (12%), Positives = 37/109 (33%), Gaps = 3/109 (2%)
Query: 763 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS--VRVWTVGS 820
Y+A + + +S++D + ++ + P+ P G + + S V + +
Sbjct: 5 YIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTAT 63
Query: 821 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 869
+ V S S Y + + ++ + + T+
Sbjct: 64 NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV 112
|
| >d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 239 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Seed storage 7S protein species: Soybean (Glycine max), proglycinin [TaxId: 3847]
Score = 40.6 bits (95), Expect = 4e-04
Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 27/115 (23%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQ-------------------QQQQQLQMQQILLQ 133
++ QQ QQ+ QS +P + Q+ + + I+
Sbjct: 81 STFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDT 140
Query: 134 RHAQQQQQHQQQ--------HQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
+ Q + Q+ + QQ+ Q+ QQ++ +G +L+G
Sbjct: 141 NSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSG 195
|
| >d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]} Length = 181 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: STAT-like superfamily: STAT family: STAT domain: STAT-1, coiled coil domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (91), Expect = 8e-04
Identities = 12/87 (13%), Positives = 32/87 (36%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
IK+ E Q + + + Q ++ + Q+Q+Q + + +R +
Sbjct: 23 HEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKI 82
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQ 168
+ + + Q + + + +QQ
Sbjct: 83 IELLNVTELTQNALINDELVEWKRRQQ 109
|
| >d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]} Length = 181 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: STAT-like superfamily: STAT family: STAT domain: STAT-1, coiled coil domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (90), Expect = 0.001
Identities = 10/84 (11%), Positives = 32/84 (38%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
+ + Q + + + Q + + + Q+Q+Q L+ ++L ++ +
Sbjct: 26 KSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIEL 85
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQ 170
+ Q + + +++QQ
Sbjct: 86 LNVTELTQNALINDELVEWKRRQQ 109
|
| >d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 125 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin family: Seed storage protein, 2S albumin domain: 2S albumin RicC3 species: Castor bean (Ricinus communis) [TaxId: 3988]
Score = 38.0 bits (88), Expect = 9e-04
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
RE QQ +Q+ Q++ ++ Q ++ ++ L+M Q+ Q+ QQ QQ
Sbjct: 10 REGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQ--QESQQLQQCC 67
Query: 147 QQQQQQQQQPP---------QQPQQQQPQQQQQRR 172
Q +Q + + Q QQ Q ++ R
Sbjct: 68 NQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESER 102
|
| >d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 125 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin family: Seed storage protein, 2S albumin domain: 2S albumin RicC3 species: Castor bean (Ricinus communis) [TaxId: 3988]
Score = 36.8 bits (85), Expect = 0.002
Identities = 17/99 (17%), Positives = 41/99 (41%), Gaps = 17/99 (17%)
Query: 73 EVAASYIETQLIKAREQQQQQQ---------QQQQQQQQQQQQSQQPPHQQQQQQQQQQQ 123
E + + R++ Q++ Q ++ ++ + P + QQQ+ QQ Q
Sbjct: 5 ESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQ 64
Query: 124 Q--LQMQQILLQ------RHAQQQQQHQQQHQQQQQQQQ 154
Q Q++Q+ + ++ + Q Q Q ++ ++
Sbjct: 65 QCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERV 103
|
| >d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RuvA C-terminal domain-like superfamily: Double-stranded DNA-binding domain family: Double-stranded DNA-binding domain domain: Programmed cell death protein 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (87), Expect = 9e-04
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
R Q+ + Q + Q Q+ + ++ + + + Q+L Q
Sbjct: 2 RRQRLAELQAKHGDPGDAAQ------QEAKHREAEMRNSILAQVLDQ 42
|
| >d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 144 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: PABP domain-like superfamily: PABC (PABP) domain family: PABC (PABP) domain domain: poly(A) binding protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (84), Expect = 0.004
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 9/71 (12%)
Query: 100 QQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQ 159
P ++ + QQ +AQ Q QQ Q Q+
Sbjct: 7 AAATPAVRTVPQYKYAAGVRNPQQH---------LNAQPQVTMQQPAVHVQGQEPLTASM 57
Query: 160 PQQQQPQQQQQ 170
PQ+Q+Q
Sbjct: 58 LASAPPQEQKQ 68
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 903 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.98 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.96 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.94 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.94 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.92 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.91 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.9 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.9 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.89 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.89 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.89 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.83 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.8 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.77 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.72 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.72 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.61 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.56 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.55 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.53 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.52 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.48 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.39 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.38 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.37 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.37 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.3 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.26 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.2 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.18 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.14 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.14 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.08 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.08 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.04 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.59 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.55 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.48 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.42 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.4 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.21 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.03 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.93 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.87 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.77 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.73 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.67 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.62 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.47 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.36 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.3 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.14 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.02 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.36 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.32 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.15 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.01 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.87 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.84 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.8 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.49 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 91.11 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 91.08 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 90.69 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 89.39 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.8e-44 Score=293.50 Aligned_cols=284 Identities=18% Similarity=0.275 Sum_probs=249.4
Q ss_pred CEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE-----EEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 2036447414999869999948999999995899299997899923-----47841589976899999999989999489
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-----KTNLEEHSSLITDVRFSPSMPRLATSSFD 686 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~-----~~~l~~h~~~V~~i~fspdg~~Lasgs~D 686 (903)
..+.+.++ .|...|+|++|+++|++||+|+ ||.|+|||+.+... .....+|...|.+++|+|++++|++++.|
T Consensus 41 ~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d 118 (337)
T d1gxra_ 41 HARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA 118 (337)
T ss_dssp EEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred CCEEEEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECC
T ss_conf 75499987-9999289999989999999997-998899773677633116876404889968999986799889886123
Q ss_pred CCEEEEECCCC-CCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE---CCCEEEEEECCCCE
Q ss_conf 93999948999-952588426888658999638999099998089929999958990568863---58106999149998
Q 002591 687 KTVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGR 762 (903)
Q Consensus 687 g~I~IWdl~~~-~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~---~~~~~i~~sp~~~~ 762 (903)
+.|++||+... ......+..|...|.++.|++++. ++++++.|+.|++|+++++++..... ..+.+++|++++..
T Consensus 119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 197 (337)
T d1gxra_ 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 321111111111111111111111111111111111-1111111111111111111111111111111110123444321
Q ss_pred EEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 9999769929999889970899950799884899992899999999399-299998788998613788403999539999
Q 002591 763 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 841 (903)
Q Consensus 763 ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 841 (903)
+++++.|+.|++||+++++.+..+. +...|.+++|+|+++++++++.+ .+++||++... . .....|...+.+++
T Consensus 198 ~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~---~-~~~~~~~~~i~~v~ 272 (337)
T d1gxra_ 198 LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---K-YQLHLHESCVLSLK 272 (337)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---E-EEECCCSSCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCC-CCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCC---C-CCCCCCCCCCCEEE
T ss_conf 1223566553211111100000246-66615799971530300000025642111111111---0-00012456541699
Q ss_pred EECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 91799989999879929999889990889815789778999936999999995698399909
Q 002591 842 FHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 842 ~sp~g~~lit~s~dg~I~iwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
|+|++.+|++++.|+.|++||+.+++.+....|...|.+++|+|++++|++|+.||.|+|||
T Consensus 273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd 334 (337)
T d1gxra_ 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEE
T ss_conf 98999999999489969999899997999926999879999927999999990899699997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.2e-43 Score=290.17 Aligned_cols=286 Identities=26% Similarity=0.481 Sum_probs=263.3
Q ss_pred EEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 03644741499986999994899999999589929999789992347841589976899999999989999489939999
Q 002591 613 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 692 (903)
Q Consensus 613 ~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IW 692 (903)
..+..+|++|.+.|+|++|+|++++||+|+.||+|+|||+.+++.+.++.+|...|.+++|++++.+++++..++.+.+|
T Consensus 7 ~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 86 (317)
T d1vyhc1 7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 86 (317)
T ss_dssp SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred CCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 98448985888876899993898999999389929999899997999995788867777630111101111111110111
Q ss_pred ECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEECC
Q ss_conf 489999525884268886589996389990999980899299999589905688635---81069991499989999769
Q 002591 693 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAE 769 (903)
Q Consensus 693 dl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~s~d 769 (903)
+... ......+.+|...+.++.|++++.. +++++.|+.+++||++++.....+.. .+..+.+++++..+++++.|
T Consensus 87 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 164 (317)
T d1vyhc1 87 DFQG-FECIRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 164 (317)
T ss_dssp ETTS-SCEEECCCCCSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCC-CCCCCCCCCCCCCCEEEECCCCCCE-EEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCEEEEEECC
T ss_conf 0011-1111110000000000001699855-7765267523575114430346871677763000016679999999279
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCC--------------------CEEEEEECC-EEEEEECCCCCCCCEEE
Q ss_conf 929999889970899950799884899992899--------------------999999399-29999878899861378
Q 002591 770 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSG--------------------ELLASVSED-SVRVWTVGSGSEGECVH 828 (903)
Q Consensus 770 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg--------------------~~lasgs~d-~I~iwdl~s~~~~~~i~ 828 (903)
+.|++|+..+......+..|...+.++.|.++. .++++++.| .|++|+++++ .++.
T Consensus 165 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~ 241 (317)
T d1vyhc1 165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLM 241 (317)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEE
T ss_pred CEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCC---CEEE
T ss_conf 8299975125403478824778733799863256411103456303430258861475169978999888999---6889
Q ss_pred EEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 84039995399999179998999987992999988999088-9815789778999936999999995698399909
Q 002591 829 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 829 ~~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.+..|...+.+++|+|++.+|++++.|+.|++||+.+++++ .+.+|...|++++|+|++.+|++|+.||.|+|||
T Consensus 242 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 242 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 9968899879999879999999997989499999999919999928999889999949999999992899499829
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.1e-43 Score=287.59 Aligned_cols=282 Identities=27% Similarity=0.438 Sum_probs=243.4
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC------------------CCCCCEEEEEECCCCCEE
Q ss_conf 41499986999994899999999589929999789992347841------------------589976899999999989
Q 002591 619 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE------------------EHSSLITDVRFSPSMPRL 680 (903)
Q Consensus 619 l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~------------------~h~~~V~~i~fspdg~~L 680 (903)
..+|++.|+||+|++||++||+|+ |++|+|||+.+++.+..+. .|...|++++|+|++++|
T Consensus 58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l 136 (388)
T d1erja_ 58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136 (388)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred ECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 079999689999999999999994-9948999813640576631665443244321110146778988999988999801
Q ss_pred EEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC--CCEEEEEEC
Q ss_conf 999489939999489999525884268886589996389990999980899299999589905688635--810699914
Q 002591 681 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQP 758 (903)
Q Consensus 681 asgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~--~~~~i~~sp 758 (903)
++|+.||.|++|+... +..+..+.+|...|.++.|++++. .+++++.++.|++||.++......... ....+.+.+
T Consensus 137 ~s~~~dg~v~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 214 (388)
T d1erja_ 137 ATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP 214 (388)
T ss_dssp EEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred EECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 2134441111211111-111111111111111101111111-11122210156541011111100001245442112368
Q ss_pred -CCCEEEEEECCCEEEEEECCCCEEEEEEC-------CCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCC------
Q ss_conf -99989999769929999889970899950-------799884899992899999999399-299998788998------
Q 002591 759 -HLGRYLAAAAENVVSILDAETQACRLSLQ-------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------ 823 (903)
Q Consensus 759 -~~~~ll~~s~dg~I~i~D~~t~~~~~~l~-------~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~------ 823 (903)
++..+++++.|+.|++||.+++.....+. +|...|.+++|+|++.+|++++.| .|++||++....
T Consensus 215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 294 (388)
T d1erja_ 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294 (388)
T ss_dssp TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred CCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCC
T ss_conf 87875899738981999634557300010244333457789878999979999999997899289875157764321013
Q ss_pred ---CCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEE------ECCCCEEEEE
Q ss_conf ---6137884039995399999179998999987992999988999088-98157897789999------3699999999
Q 002591 824 ---GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAV------STETGYVASA 893 (903)
Q Consensus 824 ---~~~i~~~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~-~~~~h~~~V~sl~~------spdg~~LaSg 893 (903)
..+......|...+.+++|++++.+|++++.|+.|++||+.+++++ .+.+|.+.|.++++ +|++.+|++|
T Consensus 295 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~ 374 (388)
T d1erja_ 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 374 (388)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred CCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEE
T ss_conf 44420011012455327899988999999999698979999999996999996889978999984674258999999999
Q ss_pred ECCCCEEECC
Q ss_conf 5698399909
Q 002591 894 SHDKFVKLWK 903 (903)
Q Consensus 894 s~DG~I~IWd 903 (903)
+.||.|+||+
T Consensus 375 s~Dg~I~iW~ 384 (388)
T d1erja_ 375 SGDCKARIWK 384 (388)
T ss_dssp ETTSEEEEEE
T ss_pred ECCCEEEEEE
T ss_conf 1899799976
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.3e-42 Score=282.33 Aligned_cols=287 Identities=21% Similarity=0.420 Sum_probs=252.8
Q ss_pred CEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 20364474149998699999489999999958992999978999234784158997689999999998999948993999
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~I 691 (903)
.++..++|++|.+.|+|++|+|++.+||+|+.||+|+|||+.+++.+..+..|...|.+++|+|++.++++++.|+.+++
T Consensus 44 ~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEC
T ss_conf 30652798887898889999899999999978995556310210257997246533775676012114431013320101
Q ss_pred EECCCCC---CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE---CCCEEEEEECCCCEEEE
Q ss_conf 9489999---52588426888658999638999099998089929999958990568863---58106999149998999
Q 002591 692 WDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLA 765 (903)
Q Consensus 692 Wdl~~~~---~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~---~~~~~i~~sp~~~~ll~ 765 (903)
|+..... .....+.+|...+....+... . .+.....|.....|............ ..+....+.+....+++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEEEEEEET-T-EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEE
T ss_conf 3322221222111001354211011111111-1-1111124454320012322111112331015763001244212687
Q ss_pred EECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEE--EECCCCCEEEEEE
Q ss_conf 9769929999889970899950799884899992899999999399-299998788998613788--4039995399999
Q 002591 766 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE--LSCNGNKFHSCVF 842 (903)
Q Consensus 766 ~s~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~--~~~~~~~i~~i~~ 842 (903)
+..|+.|++||+++++++..+.+|...|++++|+|++.+|++++.| .|++|+++.. ..+.. ...+...+..++|
T Consensus 202 ~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~~~i~~~~~ 278 (340)
T d1tbga_ 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEE
T ss_pred EECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCC---CCCCCCCCCCCCCCEEEEEE
T ss_conf 605736999999999488999578898589999799899999969996999752122---11111112244574589999
Q ss_pred ECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 179998999987992999988999088-9815789778999936999999995698399909
Q 002591 843 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 843 sp~g~~lit~s~dg~I~iwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
++++.+|++++.|+.|++||+.+++.+ .+.+|.+.|++++|+|++.+|++|+.||.|+|||
T Consensus 279 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf 89999999997979899999999939899848999789999908999999990699799859
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.7e-40 Score=268.79 Aligned_cols=279 Identities=16% Similarity=0.251 Sum_probs=226.0
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCE
Q ss_conf 49998699999489999999958992999978999234784158997689999999998999948993999948999952
Q 002591 621 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 700 (903)
Q Consensus 621 ~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWdl~~~~~~ 700 (903)
.+.+.+.+++++|+|+.||.+. ++.|.+|++.+......+.+|...|++++|+|++++|++|+.||+|+|||+.+....
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCC
T ss_conf 7788759999969989999996-999999999999661797478888899999489996722556736746631011110
Q ss_pred -EEEECCCCCCEEEEEECCCCCEEEEEEEC--CCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCE-EEEEECCCEEE
Q ss_conf -58842688865899963899909999808--99299999589905688635---8106999149998-99997699299
Q 002591 701 -LRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGR-YLAAAAENVVS 773 (903)
Q Consensus 701 -~~~~~~h~~~V~si~fsp~~~~ll~sgs~--Dg~I~iwDi~~~~~~~~~~~---~~~~i~~sp~~~~-ll~~s~dg~I~ 773 (903)
...+.+|...|.+++|++++..++ +++. +..+++|++.+++....+.+ .+.+++|+|++.. +++++.|+.|+
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d~~~l~-~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~ 172 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSESKRIA-AVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 172 (311)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEE-EEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 0001343357543323331110001-111221111111111111111111111111111111211101200011221111
Q ss_pred EEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEE----EEECCCCCEEEEEEECCCCE
Q ss_conf 99889970899950799884899992899999999399-29999878899861378----84039995399999179998
Q 002591 774 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH----ELSCNGNKFHSCVFHPTYPS 848 (903)
Q Consensus 774 i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~----~~~~~~~~i~~i~~sp~g~~ 848 (903)
+||.++.+....+..|...|+++.|+|+++++++++.| .|++||+..+.....+. ...+|...|.+++|+|++.+
T Consensus 173 i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~ 252 (311)
T d1nr0a1 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252 (311)
T ss_dssp EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 11111111111111111111112347642212111111111000124464112221111111002465321024788999
Q ss_pred EEEEECCCEEEEEECCCCCEE-EECCCCC---CEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 999987992999988999088-9815789---778999936999999995698399909
Q 002591 849 LLVIGCYQSLELWNMSENKTM-TLTAHEG---LIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 849 lit~s~dg~I~iwdl~~~~~~-~~~~h~~---~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
|++++.|+.|+|||+++++++ .+..|.. .+.++.| ++.+|++++.||.|++||
T Consensus 253 l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd 309 (311)
T d1nr0a1 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVN 309 (311)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEE
T ss_pred EEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEE--CCCEEEEEECCCEEEEEE
T ss_conf 999937996999999999699999799986332999995--199999998999799995
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.2e-40 Score=269.00 Aligned_cols=277 Identities=15% Similarity=0.224 Sum_probs=198.4
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC--EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC-
Q ss_conf 99986999994899999999589929999789992--347841589976899999999989999489939999489999-
Q 002591 622 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG- 698 (903)
Q Consensus 622 H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWdl~~~~- 698 (903)
..++|+|++|+|++++||+|+.|+.|+|||+.+++ .+..+.+|...|++++|+|++++|++++.|++|+|||+.+..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCC
T ss_conf 99883899998999999999488989999888997899999558899888999979999999997999399986203321
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEE-------EECCCEEEEEECCCCEEEEEECCCE
Q ss_conf 525884268886589996389990999980899299999589905688-------6358106999149998999976992
Q 002591 699 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-------FKGGTAQMRFQPHLGRYLAAAAENV 771 (903)
Q Consensus 699 ~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~-------~~~~~~~i~~sp~~~~ll~~s~dg~ 771 (903)
.....+.+|...|.+++|+|++. .+++++.|+.|++|++........ +...+.++.|+|++..+++++.|+.
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~ 164 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCE
T ss_conf 10012232211000111111121-10000025763025442033433111001011122211111111111000134767
Q ss_pred EEEEECCCC------------------EEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEEC
Q ss_conf 999988997------------------0899950799884899992899999999399-299998788998613788403
Q 002591 772 VSILDAETQ------------------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 832 (903)
Q Consensus 772 I~i~D~~t~------------------~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~ 832 (903)
|++|+.... ..+.....|...|.+++|+|++++|++++.| .|++||+..+ ..+..+..
T Consensus 165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~ 241 (371)
T d1k8kc_ 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVATLAS 241 (371)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEEEEC
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECC---CCEEEEEC
T ss_conf 999840157643100122111111110112440476674789875123321000014786058864101---21000001
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCEEEEEE--CCCCCEE----------------------------------------E
Q ss_conf 999539999917999899998799299998--8999088----------------------------------------9
Q 002591 833 NGNKFHSCVFHPTYPSLLVIGCYQSLELWN--MSENKTM----------------------------------------T 870 (903)
Q Consensus 833 ~~~~i~~i~~sp~g~~lit~s~dg~I~iwd--l~~~~~~----------------------------------------~ 870 (903)
|..++.+++|++++.+|+ ++.|+.+++|. ....... .
T Consensus 242 ~~~~v~s~~fs~d~~~la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
T d1k8kc_ 242 ETLPLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 320 (371)
T ss_dssp SSCCEEEEEEEETTEEEE-EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred CCCCCEEEEECCCCCEEE-EECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEE
T ss_conf 466520365469997999-9819926787760898628872020676542124622001685065205871245566141
Q ss_pred ECCCCCCEEEEEEECCC----CEEEEEECCCCEEECC
Q ss_conf 81578977899993699----9999995698399909
Q 002591 871 LTAHEGLIAALAVSTET----GYVASASHDKFVKLWK 903 (903)
Q Consensus 871 ~~~h~~~V~sl~~spdg----~~LaSgs~DG~I~IWd 903 (903)
...|.+.|+++++.+.+ ..|+|++.||.|+||+
T Consensus 321 ~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 321 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred CCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEE
T ss_conf 2555698899999489986567999991899399996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-38 Score=260.13 Aligned_cols=286 Identities=15% Similarity=0.248 Sum_probs=239.3
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEC--CCCCEEEECCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 0146557999999440899808981102--69981441776026551000002688777567864159999767877441
Q 002591 528 ISMPALPHSGTTSKPLMMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGM 605 (903)
Q Consensus 528 ~~~~~~~~~~~~~~~~i~~s~dg~~~~~--~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~d~~~~~~~~~~~~ 605 (903)
.....+.|... ...+.|+++|.++++ ++.++|||+.......
T Consensus 43 ~~~~~~~H~~~--V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~---------------------------------- 86 (337)
T d1gxra_ 43 RQINTLNHGEV--VCAVTISNPTRHVYTGGKGCVKVWDISHPGNKS---------------------------------- 86 (337)
T ss_dssp EEEEEECCSSC--CCEEEECSSSSEEEEECBSEEEEEETTSTTCCS----------------------------------
T ss_pred EEEEECCCCCC--EEEEEECCCCCEEEEEECCEEEEEECCCCCCCC----------------------------------
T ss_conf 49998799992--899999899999999979988997736776331----------------------------------
Q ss_pred CCCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECC--CCCEEEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf 013574203644741499986999994899999999589929999789--992347841589976899999999989999
Q 002591 606 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATS 683 (903)
Q Consensus 606 d~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~--t~~~~~~l~~h~~~V~~i~fspdg~~Lasg 683 (903)
........+|.+.|.+++|+|++++|++++.|+.|++||+. +......+..|...|.++.|++++.+++++
T Consensus 87 -------~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 159 (337)
T d1gxra_ 87 -------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159 (337)
T ss_dssp -------CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred -------EEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -------1687640488996899998679988988612332111111111111111111111111111111111111111
Q ss_pred ECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE--CCCEEEEEECCCC
Q ss_conf 48993999948999952588426888658999638999099998089929999958990568863--5810699914999
Q 002591 684 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLG 761 (903)
Q Consensus 684 s~Dg~I~IWdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~--~~~~~i~~sp~~~ 761 (903)
+.|+.|++|++.+ ..+.....+|...|.+++|++++. .+++++.|+.|++||+++++.+..+. ..+.+++|++++.
T Consensus 160 ~~d~~i~~~~~~~-~~~~~~~~~~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~ 237 (337)
T d1gxra_ 160 CSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE 237 (337)
T ss_dssp ETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSS
T ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCC
T ss_conf 1111111111111-111111111111111012344432-11223566553211111100000246666157999715303
Q ss_pred EEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 89999769929999889970899950799884899992899999999399-29999878899861378840399953999
Q 002591 762 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 840 (903)
Q Consensus 762 ~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i 840 (903)
.+++++.++.+++||+++..... ...|...|++++|+|++++|++++.| .|++||+.++ ..+..+. |...|.++
T Consensus 238 ~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~---~~~~~~~-~~~~v~~~ 312 (337)
T d1gxra_ 238 WLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSK-ESSSVLSC 312 (337)
T ss_dssp EEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEE-CSSCEEEE
T ss_pred CCCEECCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCC---CEEEECC-CCCCEEEE
T ss_conf 00000025642111111111000-0124565416999899999999948996999989999---7999926-99987999
Q ss_pred EEECCCCEEEEEECCCEEEEEEC
Q ss_conf 99179998999987992999988
Q 002591 841 VFHPTYPSLLVIGCYQSLELWNM 863 (903)
Q Consensus 841 ~~sp~g~~lit~s~dg~I~iwdl 863 (903)
+|+|++++|++++.|+.|+|||+
T Consensus 313 ~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 313 DISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EECTTSCEEEEEETTSCEEEEEE
T ss_pred EEECCCCEEEEEECCCEEEEEEE
T ss_conf 99279999999908996999977
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.1e-39 Score=262.62 Aligned_cols=247 Identities=17% Similarity=0.273 Sum_probs=211.9
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE--EEEECCCCCCEEEEEECCCCCEEEEEEC--CCCE
Q ss_conf 36447414999869999948999999995899299997899923--4784158997689999999998999948--9939
Q 002591 614 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSF--DKTV 689 (903)
Q Consensus 614 ~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~--~~~l~~h~~~V~~i~fspdg~~Lasgs~--Dg~I 689 (903)
.....+.+|.+.|+|++|+|+|++||+|+.||+|+|||+.+... ...+..|...|.+++|++++.+|++++. +..+
T Consensus 49 ~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~ 128 (311)
T d1nr0a1 49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 128 (311)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred CEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66179747888889999948999672255673674663101111000013433575433233311100011112211111
Q ss_pred EEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEE
Q ss_conf 999489999525884268886589996389990999980899299999589905688635---81069991499989999
Q 002591 690 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 766 (903)
Q Consensus 690 ~IWdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~ 766 (903)
+||++++ +.....+.+|...|.+++|+|++..++++|+.|+.|++||+++.++...+.. .+.++.++|++..++++
T Consensus 129 ~v~~~~~-~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~ 207 (311)
T d1nr0a1 129 HVFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 207 (311)
T ss_dssp EEEETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1111111-111111111111111111121110120001122111111111111111111111111112347642212111
Q ss_pred ECCCEEEEEECCCCEEEEEEC-------CCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCC-CE
Q ss_conf 769929999889970899950-------799884899992899999999399-299998788998613788403999-53
Q 002591 767 AAENVVSILDAETQACRLSLQ-------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN-KF 837 (903)
Q Consensus 767 s~dg~I~i~D~~t~~~~~~l~-------~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~-~i 837 (903)
+.|+.|++||.+++..+..+. +|...|++++|+|++++|++++.| .|++||++++ +++..+..+.. ..
T Consensus 208 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~---~~~~~l~~~~~~~~ 284 (311)
T d1nr0a1 208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL---KVEKTIPVGTRIED 284 (311)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCC---CEEEEEECCCCCCC
T ss_conf 111111000124464112221111111002465321024788999999937996999999999---69999979998633
Q ss_pred EEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 999991799989999879929999889
Q 002591 838 HSCVFHPTYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 838 ~~i~~sp~g~~lit~s~dg~I~iwdl~ 864 (903)
..+.+.+++..+++++.||.|++||.+
T Consensus 285 ~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 285 QQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp CEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEEEEECCCEEEEEECCCEEEEEECC
T ss_conf 299999519999999899979999588
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.6e-39 Score=266.43 Aligned_cols=285 Identities=17% Similarity=0.192 Sum_probs=231.7
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 3644741499986999994899999999589929999789992347841-589976899999999989999489939999
Q 002591 614 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVW 692 (903)
Q Consensus 614 ~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~I~IW 692 (903)
+..+.+.||.+.|+|++|+|++++|++|+.||+|++||+++++.+..+. .|...|++++|++++. +++++.|+.+++|
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~ 81 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVV 81 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEE
T ss_pred CCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCE-EECCCCEEEEEEE
T ss_conf 613684888878289999799999999908992999999999688998378877489988403311-2102310268873
Q ss_pred ECCCCCC--EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEECCC
Q ss_conf 4899995--25884268886589996389990999980899299999589905688635810699914999899997699
Q 002591 693 DADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN 770 (903)
Q Consensus 693 dl~~~~~--~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~~~~~i~~sp~~~~ll~~s~dg 770 (903)
+...... .......+...+.+++|++++..++ ++ .++.+++|+.... ..........++.|++++..+++++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~-~~-~~~~i~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~g~~dg 158 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV-AA-CYKHIAIYSHGKL-TEVPISYNSSCVALSNDKQFVAVGGQDS 158 (299)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE-EE-ESSEEEEEETTEE-EEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1677620111000111134432100112211111-22-2222211111111-1101111233221111111111111111
Q ss_pred EEEEEECCCCEEEE-EECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCE
Q ss_conf 29999889970899-950799884899992899999999399-2999987889986137884039995399999179998
Q 002591 771 VVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 848 (903)
Q Consensus 771 ~I~i~D~~t~~~~~-~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 848 (903)
.|++||+++..... ....|...|++++|+|++.+|++++.+ .|++||+.++........+..|...+.+++|+|++.+
T Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 238 (299)
T d1nr0a2 159 KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238 (299)
T ss_dssp EEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111111111111111111111111111111111111111111111111124666451
Q ss_pred EEEEECCCEEEEEECCCCCEE---EECCC-CCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 999987992999988999088---98157-89778999936999999995698399909
Q 002591 849 LLVIGCYQSLELWNMSENKTM---TLTAH-EGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 849 lit~s~dg~I~iwdl~~~~~~---~~~~h-~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
|++++.|+.|++||+.+.... ....| ...|.++.| +++.+|++++.|+.|+|||
T Consensus 239 l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd 296 (299)
T d1nr0a2 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN 296 (299)
T ss_dssp EEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred EEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEE-CCCCEEEEEECCCEEEEEE
T ss_conf 388828997999989999731489834898896899997-7989999992899799994
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.1e-37 Score=250.83 Aligned_cols=292 Identities=22% Similarity=0.315 Sum_probs=237.3
Q ss_pred CCCEEEEEECCCCEEC--CCCCEEEECCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 9440899808981102--69981441776026551000002688777567864159999767877441013574203644
Q 002591 540 SKPLMMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 617 (903)
Q Consensus 540 ~~~~i~~s~dg~~~~~--~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~ 617 (903)
...++.|++||.++++ ++.++|||+.+++....+...... .... ......
T Consensus 64 ~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~---~~~~-------------------------~~~~~~ 115 (388)
T d1erja_ 64 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAA---NKDP-------------------------ENLNTS 115 (388)
T ss_dssp CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC------------------------------------------
T ss_pred CEEEEEECCCCCEEEEEECCEEEEEEECCCCEEEEECCCCCC---CCCC-------------------------CCCCCC
T ss_conf 689999999999999994994899981364057663166544---3244-------------------------321110
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 74149998699999489999999958992999978999234784158997689999999998999948993999948999
Q 002591 618 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 697 (903)
Q Consensus 618 ~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWdl~~~ 697 (903)
....|...|++++|+|++++|++|+.||.|++|+...++.+..+.+|...|.++.|++++..+++++.++.|++||..+
T Consensus 116 ~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~- 194 (388)
T d1erja_ 116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT- 194 (388)
T ss_dssp ---CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-
T ss_pred CCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC-
T ss_conf 1467789889999889998012134441111211111111111111111111101111111111222101565410111-
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE----------CCCEEEEEECCCCEEEEEE
Q ss_conf 952588426888658999638999099998089929999958990568863----------5810699914999899997
Q 002591 698 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------GGTAQMRFQPHLGRYLAAA 767 (903)
Q Consensus 698 ~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~----------~~~~~i~~sp~~~~ll~~s 767 (903)
.........+ ....++.+.+....++++++.|+.|++|+.+++.....+. ..+..+.|++++..+++++
T Consensus 195 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 273 (388)
T d1erja_ 195 GQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273 (388)
T ss_dssp TEEEEEEECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEE
T ss_conf 1110000124-544211236887875899738981999634557300010244333457789878999979999999997
Q ss_pred CCCEEEEEECCCCE------------EEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCC
Q ss_conf 69929999889970------------899950799884899992899999999399-29999878899861378840399
Q 002591 768 AENVVSILDAETQA------------CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 834 (903)
Q Consensus 768 ~dg~I~i~D~~t~~------------~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~ 834 (903)
.|+.|++||+++.. +......|...|.+++|+|++.+|++++.| .|++||+.++ +++..+..|.
T Consensus 274 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~l~~H~ 350 (388)
T d1erja_ 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHR 350 (388)
T ss_dssp TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCS
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCC---CEEEEEECCC
T ss_conf 8992898751577643210134442001101245532789998899999999969897999999999---6999996889
Q ss_pred CCEEEEEE------ECCCCEEEEEECCCEEEEEECC
Q ss_conf 95399999------1799989999879929999889
Q 002591 835 NKFHSCVF------HPTYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 835 ~~i~~i~~------sp~g~~lit~s~dg~I~iwdl~ 864 (903)
..|.++++ +|++.+|++++.|+.|+||+++
T Consensus 351 ~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 351 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEE
T ss_conf 978999984674258999999999189979997621
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-36 Score=248.24 Aligned_cols=283 Identities=17% Similarity=0.317 Sum_probs=219.9
Q ss_pred CEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 20364474149998699999489999999958992999978999234784158997689999999998999948993999
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~I 691 (903)
.++....+++|.+.|.+ +++++|++||+|+.||+|+|||+.+++++.++.+|...|.+++|+++ +|++++.|+.+++
T Consensus 5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~ 81 (342)
T d2ovrb2 5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKV 81 (342)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEE
T ss_pred CCCCCEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCEECCCCCC
T ss_conf 88758898886875099-99978999999918990999989999799999488999899994798--6321000001111
Q ss_pred EECCCCCCEEEEECCCCCCEEEE--------------------------------------EECCCCCEEEEEEECCCCE
Q ss_conf 94899995258842688865899--------------------------------------9638999099998089929
Q 002591 692 WDADNPGYSLRTFMGHSASVMSL--------------------------------------DFHPNKDDLICSCDGDGEI 733 (903)
Q Consensus 692 Wdl~~~~~~~~~~~~h~~~V~si--------------------------------------~fsp~~~~ll~sgs~Dg~I 733 (903)
|+... .........+...+... .+..... .+++++.|+.|
T Consensus 82 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i 159 (342)
T d2ovrb2 82 WNAET-GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR-RVVSGAYDFMV 159 (342)
T ss_dssp EETTT-TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSS-CEEEEETTSCE
T ss_pred CCCCC-CCCEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEECCCCC-EEEEECCCCEE
T ss_conf 11110-00000012333047652024652212344403787403556300111001111000001333-02433589869
Q ss_pred EEEECCCCEEEEEEECC-CEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-
Q ss_conf 99995899056886358-1069991499989999769929999889970899950799884899992899999999399-
Q 002591 734 RYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED- 811 (903)
Q Consensus 734 ~iwDi~~~~~~~~~~~~-~~~i~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d- 811 (903)
++||.+...++..+.++ .....+.+++..+++++.|+.|++||++..+++..+.+|...+.++.++ +++|++++.|
T Consensus 160 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~ 237 (342)
T d2ovrb2 160 KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADS 237 (342)
T ss_dssp EEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTS
T ss_pred EEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEECC--CCEEEEECCCC
T ss_conf 9952523436678727544421006899999999589939995255653656741665320577068--99999974898
Q ss_pred EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EE-----CCCCCCEEEEEEEC
Q ss_conf 2999987889986137884039995399999179998999987992999988999088-98-----15789778999936
Q 002591 812 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL-----TAHEGLIAALAVST 885 (903)
Q Consensus 812 ~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~-~~-----~~h~~~V~sl~~sp 885 (903)
.|++||+...+....+.....|...+.++.++ +.++++++.||.|++||+++++.+ .+ .+|...|++++|+|
T Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~ 315 (342)
T d2ovrb2 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 315 (342)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred EEEEEECCCCCCCCCCCCCCEEEECEEECCCC--CCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECC
T ss_conf 89998655442211122100011010000137--9844999089989999999997989986234789889789999879
Q ss_pred CCCEEEEEECCCC----EEECC
Q ss_conf 9999999956983----99909
Q 002591 886 ETGYVASASHDKF----VKLWK 903 (903)
Q Consensus 886 dg~~LaSgs~DG~----I~IWd 903 (903)
++.+|++|+.||+ |++||
T Consensus 316 ~~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 316 TKLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp SEEEEEEECSSSSSCCEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEEEE
T ss_conf 9989999968999704899993
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.6e-35 Score=239.22 Aligned_cols=277 Identities=20% Similarity=0.304 Sum_probs=215.2
Q ss_pred EEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCC--CCEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 03644741499986999994899999999589929999789992347841589--9768999999999899994899399
Q 002591 613 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS--SLITDVRFSPSMPRLATSSFDKTVR 690 (903)
Q Consensus 613 ~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~--~~V~~i~fspdg~~Lasgs~Dg~I~ 690 (903)
.+.+.++++|.+.|++++|+++ .+|++++.|+.|++|+.............. ..+..+.+.+++.++++++.|+.|+
T Consensus 43 ~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 121 (355)
T d1nexb2 43 KKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121 (355)
T ss_dssp TEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEE
T ss_conf 9399999789998899998699-999999645244321111111111110011111111111112322045543888689
Q ss_pred EEECCCCCCE----------------------EEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE
Q ss_conf 9948999952----------------------588426888658999638999099998089929999958990568863
Q 002591 691 VWDADNPGYS----------------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 748 (903)
Q Consensus 691 IWdl~~~~~~----------------------~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~ 748 (903)
+|++...... ......|...+...... +. +++++..|+.|++||+++++.+..+.
T Consensus 122 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~~~~~~~d~~i~~~d~~~~~~~~~~~ 198 (355)
T d1nexb2 122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH--GN-IVVSGSYDNTLIVWDVAQMKCLYILS 198 (355)
T ss_dssp EEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCCCCCCCCC--CC-EEEEECCCCEEEEEECCCCCCEEEEE
T ss_conf 9985677300124652000100000112340121011002221000025--63-34421144204443013110001100
Q ss_pred C---CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCC
Q ss_conf 5---81069991499989999769929999889970899950799884899992899999999399-2999987889986
Q 002591 749 G---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG 824 (903)
Q Consensus 749 ~---~~~~i~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~ 824 (903)
. ....+.+++.+..+++++.|+.|++||.+++.++..+.+|...|.++.|+ +++|++++.| .|++||+++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~-- 274 (355)
T d1nexb2 199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS-- 274 (355)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC--
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCCCCCCCCCCCCC--
T ss_conf 012332111111210021012456368763012211111111111111111232--1003332011111111111111--
Q ss_pred CEEEEEECCCCCEEEE-EEECCCCEEEEEECCCEEEEEECCCCCEE--EECCCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 1378840399953999-99179998999987992999988999088--98157897789999369999999956983999
Q 002591 825 ECVHELSCNGNKFHSC-VFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKL 901 (903)
Q Consensus 825 ~~i~~~~~~~~~i~~i-~~sp~g~~lit~s~dg~I~iwdl~~~~~~--~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~I 901 (903)
. .+..|...+..+ .+++++. +++++.|+.|++||+++++++ .+.+|...|.+++|+++ .++++++.||.++|
T Consensus 275 -~--~~~~~~~~~~~~~~~~~~~~-~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l 349 (355)
T d1nexb2 275 -R--KFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFL 349 (355)
T ss_dssp -E--EEEEECTTCCCCCEEEECSS-EEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEE
T ss_pred -E--ECCCCCCCCEEEEEECCCCC-EEEEEECCEEEEEECCCCCEEEEEECCCCCCEEEEEECCC-EEEEEEECCCCEEE
T ss_conf -0--00124688229999849998-9999809979999999997988884589998999998399-19999989890999
Q ss_pred C
Q ss_conf 0
Q 002591 902 W 902 (903)
Q Consensus 902 W 902 (903)
|
T Consensus 350 ~ 350 (355)
T d1nexb2 350 E 350 (355)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.5e-35 Score=237.14 Aligned_cols=277 Identities=20% Similarity=0.333 Sum_probs=223.4
Q ss_pred EEEEEECCCCCE-EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 644741499986-9999948999999995899299997899923478415899768999999999899994899399994
Q 002591 615 EANSVRASTSKV-ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 693 (903)
Q Consensus 615 ~~~~l~~H~~~V-~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWd 693 (903)
+..+|++|.+.| +|++| ++++||+|+.||+|+|||+.+++.+.++.+|...|++++|+++ .+|++++.|+.|++|+
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred CCEEECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCC
T ss_conf 758889837886999998--8999999918990999989999399999789998899998699-9999996452443211
Q ss_pred CCCCCCEEEEECCCCC--CEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE-----------------------
Q ss_conf 8999952588426888--658999638999099998089929999958990568863-----------------------
Q 002591 694 ADNPGYSLRTFMGHSA--SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------------------- 748 (903)
Q Consensus 694 l~~~~~~~~~~~~h~~--~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~----------------------- 748 (903)
+.. ............ .+....+.+++ .++++++.|+.|++||++.........
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
T d1nexb2 81 IKK-GCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 158 (355)
T ss_dssp TTT-TEEEEEECCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEE
T ss_conf 111-1111111001111111111111232-20455438886899985677300124652000100000112340121011
Q ss_pred C-CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCE
Q ss_conf 5-81069991499989999769929999889970899950799884899992899999999399-299998788998613
Q 002591 749 G-GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 826 (903)
Q Consensus 749 ~-~~~~i~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~ 826 (903)
. ......+.+++..++.+..|+.|++||+++++.+..+.++...+.++.|++++.++++++.| .|++|++.++ ..
T Consensus 159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~ 235 (355)
T d1nexb2 159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---EL 235 (355)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC---CE
T ss_pred ECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCC---CC
T ss_conf 002221000025633442114420444301311000110001233211111121002101245636876301221---11
Q ss_pred EEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEE-EEECCCCEEEEEECCCCEEECC
Q ss_conf 7884039995399999179998999987992999988999088981578977899-9936999999995698399909
Q 002591 827 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAAL-AVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 827 i~~~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~~~~~h~~~V~sl-~~spdg~~LaSgs~DG~I~IWd 903 (903)
+..+..|...+.++.+++ .+|++++.|+.|++||+.+..... ..|...+.++ .+++++.+|++| .|+.|+|||
T Consensus 236 ~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd 309 (355)
T d1nexb2 236 MYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF-SYHHTNLSAITTFYVSDNILVSG-SENQFNIYN 309 (355)
T ss_dssp EEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE-EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCC--CEEEEEECCCCCCCCCCCCCCEEC-CCCCCCCEEEEEECCCCCEEEEE-ECCEEEEEE
T ss_conf 111111111111112321--003332011111111111111000-12468822999984999899998-099799999
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.3e-35 Score=236.74 Aligned_cols=272 Identities=22% Similarity=0.461 Sum_probs=236.7
Q ss_pred CCCEEEEEECCCCEEC---CCCCEEEECCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 9440899808981102---6998144177602655100000268877756786415999976787744101357420364
Q 002591 540 SKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 616 (903)
Q Consensus 540 ~~~~i~~s~dg~~~~~---~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~ 616 (903)
....+.|++++.++++ ++.++|||+.++ +.+
T Consensus 19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~----------------------------------------------~~~ 52 (317)
T d1vyhc1 19 PVTRVIFHPVFSVMVSASEDATIKVWDYETG----------------------------------------------DFE 52 (317)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTC----------------------------------------------CCC
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCC----------------------------------------------CEE
T ss_conf 7689999389899999938992999989999----------------------------------------------799
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 47414999869999948999999995899299997899923478415899768999999999899994899399994899
Q 002591 617 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 696 (903)
Q Consensus 617 ~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWdl~~ 696 (903)
.++++|.+.|.+++|++++.+++++..++.+.+|+.........+..|...+.++.|++++..+++++.|+.+++||+.+
T Consensus 53 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 132 (317)
T d1vyhc1 53 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 132 (317)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred EEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCC
T ss_conf 99957888677776301111011111111101110011111111000000000000169985577652675235751144
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECC--------------
Q ss_conf 99525884268886589996389990999980899299999589905688635---8106999149--------------
Q 002591 697 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPH-------------- 759 (903)
Q Consensus 697 ~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~---~~~~i~~sp~-------------- 759 (903)
+.....+.+|...+.+++|++++. ++++++.|+.|++|++.+......+.. .+..+.+.++
T Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 210 (317)
T d1vyhc1 133 -GYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET 210 (317)
T ss_dssp -CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-
T ss_pred -CEEEEEECCCCCCCEEEECCCCCC-EEEEEECCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEE
T ss_conf -303468716777630000166799-999992798299975125403478824778733799863256411103456303
Q ss_pred ------CCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEEC
Q ss_conf ------9989999769929999889970899950799884899992899999999399-299998788998613788403
Q 002591 760 ------LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 832 (903)
Q Consensus 760 ------~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~ 832 (903)
+..+++++.|+.|++||.++++++..+.+|...|.+++|+|++++|++++.| .|++||+.++ +++..+..
T Consensus 211 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~ 287 (317)
T d1vyhc1 211 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNA 287 (317)
T ss_dssp ------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEEC
T ss_pred EEECCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC---CEEEEECC
T ss_conf 430258861475169978999888999688999688998799998799999999979894999999999---19999928
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 999539999917999899998799299998
Q 002591 833 NGNKFHSCVFHPTYPSLLVIGCYQSLELWN 862 (903)
Q Consensus 833 ~~~~i~~i~~sp~g~~lit~s~dg~I~iwd 862 (903)
|...|++++|++++.+|++++.|+.|++||
T Consensus 288 h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 288 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 999889999949999999992899499829
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.5e-35 Score=240.84 Aligned_cols=280 Identities=15% Similarity=0.187 Sum_probs=218.8
Q ss_pred CCEEEEEECCCCEECC---CCCEEEECCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 4408998089811026---9981441776026551000002688777567864159999767877441013574203644
Q 002591 541 KPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 617 (903)
Q Consensus 541 ~~~i~~s~dg~~~~~~---~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~ 617 (903)
..+++|++||..+++. +.++|||...+ .+..+.
T Consensus 10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~--------------------------------------------~~~~~~ 45 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGN--------------------------------------------KWVQVH 45 (371)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETT--------------------------------------------EEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCC--------------------------------------------CEEEEE
T ss_conf 389999899999999948898999988899--------------------------------------------789999
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE--EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 7414999869999948999999995899299997899923--47841589976899999999989999489939999489
Q 002591 618 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 695 (903)
Q Consensus 618 ~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~--~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWdl~ 695 (903)
.+++|.+.|++++|+|++++|++++.|++|+|||+.+... ...+.+|...|++++|+|+++.|++++.|+.|++|+++
T Consensus 46 ~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~ 125 (371)
T d1k8kc_ 46 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125 (371)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEE
T ss_conf 95588998889999799999999979993999862033211001223221100011111112110000025763025442
Q ss_pred CCCC---EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCE------------------EEEEEE---CCC
Q ss_conf 9995---2588426888658999638999099998089929999958990------------------568863---581
Q 002591 696 NPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------------------CTRVFK---GGT 751 (903)
Q Consensus 696 ~~~~---~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~------------------~~~~~~---~~~ 751 (903)
.... .......|...|.+++|+|++. ++++++.|+.|++|+..... ...... ..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 204 (371)
T d1k8kc_ 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 204 (371)
T ss_dssp TTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCE
T ss_conf 03343311100101112221111111111-10001347679998401576431001221111111101124404766747
Q ss_pred EEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCCCCCE-----
Q ss_conf 069991499989999769929999889970899950799884899992899999999399299998788998613-----
Q 002591 752 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGEC----- 826 (903)
Q Consensus 752 ~~i~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d~I~iwdl~s~~~~~~----- 826 (903)
..++|+|++..+++++.|+.|++||+.++..+..+..|..+|.+++|++++.+|+++.++.+++|..........
T Consensus 205 ~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~ 284 (371)
T d1k8kc_ 205 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRL 284 (371)
T ss_dssp EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCC
T ss_pred EEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEEEE
T ss_conf 89875123321000014786058864101210000014665203654699979999819926787760898628872020
Q ss_pred ---------------------------------EEEEECCCCCEEEEEEECCC----CEEEEEECCCEEEEEECCC
Q ss_conf ---------------------------------78840399953999991799----9899998799299998899
Q 002591 827 ---------------------------------VHELSCNGNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSE 865 (903)
Q Consensus 827 ---------------------------------i~~~~~~~~~i~~i~~sp~g----~~lit~s~dg~I~iwdl~~ 865 (903)
......|.+.|.++++.+.+ ..|++++.||.|++||+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 285 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred CCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCC
T ss_conf 6765421246220016850652058712455661412555698899999489986567999991899399996986
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-34 Score=233.42 Aligned_cols=250 Identities=17% Similarity=0.267 Sum_probs=165.4
Q ss_pred EEEEEEECC-CCCEEEEEECC--CCCEEEEEECCCCEEEEECCCCCEE--------EEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 364474149-99869999948--9999999958992999978999234--------784158997689999999998999
Q 002591 614 KEANSVRAS-TSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSK--------TNLEEHSSLITDVRFSPSMPRLAT 682 (903)
Q Consensus 614 ~~~~~l~~H-~~~V~~i~fsp--dg~~Latgs~Dg~I~IWd~~t~~~~--------~~l~~h~~~V~~i~fspdg~~Las 682 (903)
.....+.+| ...|++++|+| ++.+||+|+.||+|+|||+...... ..+..|...|.+++|++++.+|++
T Consensus 53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 132 (325)
T d1pgua1 53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132 (325)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred CCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCE
T ss_conf 50289907899988999981179997999994899779854058862156510025411365673779998999882201
Q ss_pred EEC--CCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCC
Q ss_conf 948--993999948999952588426888658999638999099998089929999958990568863581069991499
Q 002591 683 SSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 760 (903)
Q Consensus 683 gs~--Dg~I~IWdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~~~~~i~~sp~~ 760 (903)
++. ++.+++|+.++ +.++..+.+|...|.+++|++++..++++++.|+.|++||.+..+....+.
T Consensus 133 ~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~------------ 199 (325)
T d1pgua1 133 VGEGRDNFGVFISWDS-GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR------------ 199 (325)
T ss_dssp EECCSSCSEEEEETTT-CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC------------
T ss_pred EECCCCCEEEEEEECC-CCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECC------------
T ss_conf 0012440478885023-311001200123432111123432068886211122111122110000000------------
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCC-CCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEE
Q ss_conf 98999976992999988997089995079988489999289-9999999399-299998788998613788403999539
Q 002591 761 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 838 (903)
Q Consensus 761 ~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd-g~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~ 838 (903)
....|...|.+++|+|+ +.+|++++.| .|++||++++ .++..+..|...+.
T Consensus 200 ------------------------~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~---~~~~~l~~~~~~v~ 252 (325)
T d1pgua1 200 ------------------------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG---EFLKYIEDDQEPVQ 252 (325)
T ss_dssp ------------------------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC---CEEEECCBTTBCCC
T ss_pred ------------------------CCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCC---CCCCCCCCCCCCCC
T ss_conf ------------------------015777752776303453100001123321013430012---22111111111111
Q ss_pred EEEEE---CCCCEEEEEECCCEEEEEECCCCCEE-EECCCCC--CEEEEEEEC-CCCEEEEEECCCCEEECC
Q ss_conf 99991---79998999987992999988999088-9815789--778999936-999999995698399909
Q 002591 839 SCVFH---PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG--LIAALAVST-ETGYVASASHDKFVKLWK 903 (903)
Q Consensus 839 ~i~~s---p~g~~lit~s~dg~I~iwdl~~~~~~-~~~~h~~--~V~sl~~sp-dg~~LaSgs~DG~I~IWd 903 (903)
.+.|+ +++.+|++++.|+.|+|||+.+++++ .+..|.. .+..+++.+ .+.+|++++.||.|+|||
T Consensus 253 ~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 253 GGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324 (325)
T ss_dssp SCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEE
T ss_conf 100000036899999995899399999999978899995487406769999988999999997999999997
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-33 Score=227.93 Aligned_cols=275 Identities=22% Similarity=0.432 Sum_probs=219.9
Q ss_pred CEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 20364474149998699999489999999958992999978999234784158997689999999998999948993999
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~I 691 (903)
.+..+.....|...|+|++| |+++||+|+.||+|+|||+.+++++.++.+|...|++++| ++++|++++.|+.|++
T Consensus 4 ~~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~ 79 (293)
T d1p22a2 4 SLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV 79 (293)
T ss_dssp CCCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred EEEEEECCCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCC
T ss_conf 67898432899998899987--6999999928993999999999199999267787763423--6300210011101100
Q ss_pred EECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEE---EEECCC-EEEEEECCCCEEEEEE
Q ss_conf 948999952588426888658999638999099998089929999958990568---863581-0699914999899997
Q 002591 692 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VFKGGT-AQMRFQPHLGRYLAAA 767 (903)
Q Consensus 692 Wdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~---~~~~~~-~~i~~sp~~~~ll~~s 767 (903)
|++.. +........+....... ..... .++++..++.+++|+........ .+..+. ....+......+++++
T Consensus 80 ~~~~~-~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s 155 (293)
T d1p22a2 80 WDVNT-GEMLNTLIHHCEAVLHL--RFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS 155 (293)
T ss_dssp EESSS-CCEEEEECCCCSCEEEE--ECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred CCCCC-CCCCCCCCCCCCCCCCC--CCCCC-CEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 00024-64100111111000011--11110-0000135663068613445444212100011354311000002201106
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 69929999889970899950799884899992899999999399-29999878899861378840399953999991799
Q 002591 768 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 846 (903)
Q Consensus 768 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g 846 (903)
.|+.|++||.++.+.+..+.++...+..+.++ +.++++++.| .|++||+++. ..+.....+...+.. +.+++
T Consensus 156 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~--~~~~~ 228 (293)
T d1p22a2 156 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRC--IRFDN 228 (293)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEE--EECCS
T ss_pred CCCCEEEECCCCCCEEEEECCCCCCCCCCCCC--CCEEEEECCCCEEEEEECCCC---EEEEEECCCCEEEEE--CCCCC
T ss_conf 99860410078883889971554453221689--875887658998999866556---146652143100000--14541
Q ss_pred CEEEEEECCCEEEEEECCCC---------CEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 98999987992999988999---------088-9815789778999936999999995698399909
Q 002591 847 PSLLVIGCYQSLELWNMSEN---------KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 847 ~~lit~s~dg~I~iwdl~~~---------~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.+|++++.|+.|++||+... ..+ .+.+|.+.|++++|+ +.+|++++.||.|+|||
T Consensus 229 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC--CCEEEEEECCCEEEEEC
T ss_conf 079998679979999888886444567754557845889988999971--99999992299899959
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.2e-34 Score=230.81 Aligned_cols=269 Identities=12% Similarity=0.179 Sum_probs=222.4
Q ss_pred CEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 20364474149998699999489999999958992999978999234784158997689999999998999948993999
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~I 691 (903)
.-++++++++|.++|+|++|++ |++|+.||+|++||+.++ ...|...|.++.|+++. .+++++.|++|++
T Consensus 2 ~~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~ 71 (287)
T d1pgua2 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKV 71 (287)
T ss_dssp EEEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEE
T ss_pred CCCEEEEECCCCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCCC-EEEEEEECCCCCC
T ss_conf 9603499988798649999895----789848991999989998-----88877878999965997-2898861012221
Q ss_pred EECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEECCC-
Q ss_conf 9489999525884268886589996389990999980899299999589905688635810699914999899997699-
Q 002591 692 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN- 770 (903)
Q Consensus 692 Wdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~~~~~i~~sp~~~~ll~~s~dg- 770 (903)
|++.. .. ....+.++.+.+++. ++ ....++.+.+|+...+.....+.......++.+++..+++++.++
T Consensus 72 w~~~~-----~~---~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 141 (287)
T d1pgua2 72 NGITK-----HE---FGSQPKVASANNDGF-TA-VLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 141 (287)
T ss_dssp TTEEE-----EE---CSSCEEEEEECSSSE-EE-EEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTS
T ss_pred CCCCC-----CC---CCCCEEEEEECCCCC-EE-EEEECCCCEEEECCCEEEEEECCCCCEEEEEECCCCCEEEECCCCC
T ss_conf 11111-----11---122101466416785-69-9960332100001100354310122203565214751110002210
Q ss_pred EEEEEECCCCEEEEEECC-CCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECC---
Q ss_conf 299998899708999507-99884899992899999999399-2999987889986137884039995399999179---
Q 002591 771 VVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT--- 845 (903)
Q Consensus 771 ~I~i~D~~t~~~~~~l~~-h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~--- 845 (903)
.+++|++........+.. +...+++++|+|++.+|++++.| .|++||+.++. .....+..|...+.+++|+|.
T Consensus 142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~ 219 (287)
T d1pgua2 142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE--VKTSRWAFRTSKINAISWKPAEKG 219 (287)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEECCSCCCSSCEEEEEECCCC--
T ss_pred EEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCC--CCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 002100012210001210247853699951676521101111110000002332--110001111111100000136541
Q ss_pred -------CCEEEEEECCCEEEEEECCC-CCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf -------99899998799299998899-9088-9815789778999936999999995698399909
Q 002591 846 -------YPSLLVIGCYQSLELWNMSE-NKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 846 -------g~~lit~s~dg~I~iwdl~~-~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+.++++++.|+.|++||+.. .+.+ .+.+|...|++++|++++ .|++++.|+.|++|+
T Consensus 220 ~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 285 (287)
T ss_dssp ----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred CCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEE
T ss_conf 001267887027664999599988899975899927878985899998999-899997999299999
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.8e-34 Score=231.68 Aligned_cols=288 Identities=13% Similarity=0.065 Sum_probs=214.7
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE---EEECCCCCCEEEEEECCCC-CEEEEEECCCCE
Q ss_conf 364474149998699999489999999958992999978999234---7841589976899999999-989999489939
Q 002591 614 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK---TNLEEHSSLITDVRFSPSM-PRLATSSFDKTV 689 (903)
Q Consensus 614 ~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~---~~l~~h~~~V~~i~fspdg-~~Lasgs~Dg~I 689 (903)
+.+....+|.+.|++|+|+|++++||+|+.||+|+|||+.+.... ....+|...|++++|++++ .+|++|+.|+.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCE
T ss_conf 75976889989788899958999999997999299997569986368988558999889999958999789981265311
Q ss_pred EEEECCCCCCEEEEECCCC-CCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE----E-----CCCEEEEEECC
Q ss_conf 9994899995258842688-865899963899909999808992999995899056886----3-----58106999149
Q 002591 690 RVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----K-----GGTAQMRFQPH 759 (903)
Q Consensus 690 ~IWdl~~~~~~~~~~~~h~-~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~----~-----~~~~~i~~sp~ 759 (903)
++|++..... ......+. .......+.++ ...+++++.|+.+++||++........ . .......+.+.
T Consensus 82 ~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (342)
T d1yfqa_ 82 LKVDLIGSPS-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159 (342)
T ss_dssp EEECSSSSSS-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred EEEECCCCCC-CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECC
T ss_conf 4542044320-00001111111111111111-111111012221110202344433023000243001200000100016
Q ss_pred CCEEEEEECCCEEEEEECCCCEE---EEEECCCCCCEEEEEECC-CCCEEEEEECC-EEEEEECCCCCCCC------EE-
Q ss_conf 99899997699299998899708---999507998848999928-99999999399-29999878899861------37-
Q 002591 760 LGRYLAAAAENVVSILDAETQAC---RLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGE------CV- 827 (903)
Q Consensus 760 ~~~ll~~s~dg~I~i~D~~t~~~---~~~l~~h~~~V~si~~sp-dg~~lasgs~d-~I~iwdl~s~~~~~------~i- 827 (903)
...+++++.|+.|++||++.... ..........+.++.+.+ ++..+++++.+ .+.+|++....... ..
T Consensus 160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~ 239 (342)
T d1yfqa_ 160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred CCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEE
T ss_conf 87024651798478876056763411121025422101467636999878865489959999805986401112351256
Q ss_pred -----EEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEC
Q ss_conf -----884039995399999179998999987992999988999088981578977899993699999999569839990
Q 002591 828 -----HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 828 -----~~~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
.....+...+.+++|+|++.+|++++.||.|++||+.+++.+....+...+..++|++++.++++++.|+.+++|
T Consensus 240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~ 319 (342)
T d1yfqa_ 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTN 319 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHC
T ss_pred EEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCEEEEEECCCCEEEE
T ss_conf 55531477762354315996698447999879998999999989498870589998799999479999999919927883
Q ss_pred C
Q ss_conf 9
Q 002591 903 K 903 (903)
Q Consensus 903 d 903 (903)
.
T Consensus 320 ~ 320 (342)
T d1yfqa_ 320 A 320 (342)
T ss_dssp S
T ss_pred E
T ss_conf 0
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.6e-31 Score=213.47 Aligned_cols=271 Identities=23% Similarity=0.417 Sum_probs=226.7
Q ss_pred CCCEEEEEECCCCEEC---CCCCEEEECCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 9440899808981102---6998144177602655100000268877756786415999976787744101357420364
Q 002591 540 SKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 616 (903)
Q Consensus 540 ~~~~i~~s~dg~~~~~---~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~ 616 (903)
....+.|++++.++++ ++.++|||..++ +.+
T Consensus 57 ~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~----------------------------------------------~~~ 90 (340)
T d1tbga_ 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTT----------------------------------------------NKV 90 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTT----------------------------------------------EEE
T ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCC----------------------------------------------EEE
T ss_conf 8889999899999999978995556310210----------------------------------------------257
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC----CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 47414999869999948999999995899299997899----92347841589976899999999989999489939999
Q 002591 617 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 692 (903)
Q Consensus 617 ~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t----~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IW 692 (903)
..+..|...|++++|+|++.++++++.|+.|++|+... ......+.+|...+....+.. ...++....|.....|
T Consensus 91 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 169 (340)
T d1tbga_ 91 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALW 169 (340)
T ss_dssp EEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEE
T ss_pred EEEECCCCCEEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
T ss_conf 997246533775676012114431013320101332222122211100135421101111111-1111111244543200
Q ss_pred ECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEECC
Q ss_conf 489999525884268886589996389990999980899299999589905688635---81069991499989999769
Q 002591 693 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAE 769 (903)
Q Consensus 693 dl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~s~d 769 (903)
.... .........+...+....+.+... ++++++.|+.|++||+++++++..+.+ .+.+++|+|++..+++++.|
T Consensus 170 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d 247 (340)
T d1tbga_ 170 DIET-GQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247 (340)
T ss_dssp ETTT-TEEEEEEECCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCC-CCCCCCCCCCCEEEEEECCCCCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECC
T ss_conf 1232-211111233101576300124421-26876057369999999994889995788985899997998999999699
Q ss_pred CEEEEEECCCCEEEEEEC--CCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 929999889970899950--799884899992899999999399-29999878899861378840399953999991799
Q 002591 770 NVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 846 (903)
Q Consensus 770 g~I~i~D~~t~~~~~~l~--~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g 846 (903)
+.|++||++....+..+. .+...|.+++|++++.+|++++.| .|++||+.++ .++..+..|...|.+++|+|++
T Consensus 248 ~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~H~~~V~~l~~s~d~ 324 (340)
T d1tbga_ 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDG 324 (340)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTS
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC---CEEEEECCCCCCEEEEEEECCC
T ss_conf 9699975212211111112244574589999899999999979798999999999---3989984899978999990899
Q ss_pred CEEEEEECCCEEEEEE
Q ss_conf 9899998799299998
Q 002591 847 PSLLVIGCYQSLELWN 862 (903)
Q Consensus 847 ~~lit~s~dg~I~iwd 862 (903)
.+|++++.|+.|++||
T Consensus 325 ~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 325 MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEECCCCEEEEEC
T ss_conf 9999990699799859
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3e-32 Score=219.50 Aligned_cols=287 Identities=14% Similarity=0.191 Sum_probs=209.4
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE------EEEECCCCCCEEEEEE------CC-CCCEE
Q ss_conf 36447414999869999948999999995899299997899923------4784158997689999------99-99989
Q 002591 614 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS------KTNLEEHSSLITDVRF------SP-SMPRL 680 (903)
Q Consensus 614 ~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~------~~~l~~h~~~V~~i~f------sp-dg~~L 680 (903)
......++|.+.|+++++++ ++|++++.|++|+|||..+... ......|...+..+.+ .. +..++
T Consensus 5 ~~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (393)
T d1sq9a_ 5 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 82 (393)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred EEEECCCCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEE
T ss_conf 24520876367127999969--9999997999699878987887765404676542047716766675001579987689
Q ss_pred EEEECCCCEEEEECCCCCCEEEE----E-----CCCCCCEEEEEECCCC----CEEEEEEECCCCEEEEECCCCE-----
Q ss_conf 99948993999948999952588----4-----2688865899963899----9099998089929999958990-----
Q 002591 681 ATSSFDKTVRVWDADNPGYSLRT----F-----MGHSASVMSLDFHPNK----DDLICSCDGDGEIRYWSINNGS----- 742 (903)
Q Consensus 681 asgs~Dg~I~IWdl~~~~~~~~~----~-----~~h~~~V~si~fsp~~----~~ll~sgs~Dg~I~iwDi~~~~----- 742 (903)
++++.||.|++|++......... . ..+...+..++|.++. ..++++++.||.|++|++....
T Consensus 83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~ 162 (393)
T d1sq9a_ 83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 162 (393)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCE
T ss_conf 99948991999982289820565124563243115789668999844788654217999838981999874047753410
Q ss_pred ----------EEEEE------ECCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEE------CCCCCCEEEEEECC
Q ss_conf ----------56886------358106999149998999976992999988997089995------07998848999928
Q 002591 743 ----------CTRVF------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL------QGHTKPIDSVCWDP 800 (903)
Q Consensus 743 ----------~~~~~------~~~~~~i~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l------~~h~~~V~si~~sp 800 (903)
..... ...+.+++|++++ .+++++.|+.|++||+.+++++..+ .+|..+|.+++|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 241 (393)
T d1sq9a_ 163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241 (393)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred EEEEECCCEECCCCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf 2331032000145100025789867899978999-899993898299986023321100001111124256387700466
Q ss_pred CCCEEEEEECC----EEEEEECCCCCCCCEE----------EEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf 99999999399----2999987889986137----------884039995399999179998999987992999988999
Q 002591 801 SGELLASVSED----SVRVWTVGSGSEGECV----------HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 866 (903)
Q Consensus 801 dg~~lasgs~d----~I~iwdl~s~~~~~~i----------~~~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~ 866 (903)
++++|++++.| .|++||+.++.....+ ..+.+|...|++++|+|++++|++++.|+.|++||+.++
T Consensus 242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 321 (393)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred CCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCC
T ss_conf 53201124289884210010353213444311566664310232023586660013898880698779998999999999
Q ss_pred CEE-EECCCCC---------------------CEEEEEEECCC----------CEEEEEECCCCEEECC
Q ss_conf 088-9815789---------------------77899993699----------9999995698399909
Q 002591 867 KTM-TLTAHEG---------------------LIAALAVSTET----------GYVASASHDKFVKLWK 903 (903)
Q Consensus 867 ~~~-~~~~h~~---------------------~V~sl~~spdg----------~~LaSgs~DG~I~IWd 903 (903)
+++ ++.+|.. .+.++.|.+.+ ..|++++.|+.|++|+
T Consensus 322 ~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 322 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCEEEECCCCCEECCCCCCCCEEEEEECCCEEEEEE
T ss_conf 799999886876137734899999999999831246998866766312368899799999199089990
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=8.8e-32 Score=216.47 Aligned_cols=270 Identities=16% Similarity=0.179 Sum_probs=203.9
Q ss_pred CCCEEEEEECCCCEEC---CCCCEEEECCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 9440899808981102---6998144177602655100000268877756786415999976787744101357420364
Q 002591 540 SKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 616 (903)
Q Consensus 540 ~~~~i~~s~dg~~~~~---~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~ 616 (903)
....+.|++|+.++++ ++.+++||+.++.. .
T Consensus 14 ~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~----------------------------------------------~ 47 (299)
T d1nr0a2 14 AITALSSSADGKTLFSADAEGHINSWDISTGIS----------------------------------------------N 47 (299)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----------------------------------------------E
T ss_pred CCEEEEECCCCCEEEEECCCCEEEEEECCCCCE----------------------------------------------E
T ss_conf 828999979999999990899299999999968----------------------------------------------8
Q ss_pred EEE-ECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC---EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 474-1499986999994899999999589929999789992---347841589976899999999989999489939999
Q 002591 617 NSV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 692 (903)
Q Consensus 617 ~~l-~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~---~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IW 692 (903)
..+ .+|...|++++|++++.++ +++.|+.+++|+..... .......+...+.+++|++++.++++++ ++.+++|
T Consensus 48 ~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~ 125 (299)
T d1nr0a2 48 RVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIY 125 (299)
T ss_dssp ECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEE
T ss_pred EEECCCCCCCEEEEEEECCCEEE-CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
T ss_conf 99837887748998840331121-023102688731677620111000111134432100112211111222-2222111
Q ss_pred ECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE----ECCCEEEEEECCCCEEEEEEC
Q ss_conf 4899995258842688865899963899909999808992999995899056886----358106999149998999976
Q 002591 693 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRYLAAAA 768 (903)
Q Consensus 693 dl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~----~~~~~~i~~sp~~~~ll~~s~ 768 (903)
+... ..... ....+.+++|+|++. ++++++.|+.|++||+++.+..... ...+.++.|++++..+++++.
T Consensus 126 ~~~~---~~~~~--~~~~~~~~~~s~~~~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 199 (299)
T d1nr0a2 126 SHGK---LTEVP--ISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ 199 (299)
T ss_dssp ETTE---EEEEE--CSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCCC---CCCCC--CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1111---11101--111233221111111-11111111111111111111111111111111111111111111111111
Q ss_pred CCEEEEEECCCCEEEE---EECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 9929999889970899---950799884899992899999999399-299998788998613788403999539999917
Q 002591 769 ENVVSILDAETQACRL---SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 844 (903)
Q Consensus 769 dg~I~i~D~~t~~~~~---~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp 844 (903)
++.|++||..+..... .+.+|...|++++|+|++.+|++++.| .|++||++++.....+.....+...+..+.| +
T Consensus 200 d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~ 278 (299)
T d1nr0a2 200 SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-L 278 (299)
T ss_dssp TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-E
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEE-C
T ss_conf 111111111111111111111111111111124666451388828997999989999731489834898896899997-7
Q ss_pred CCCEEEEEECCCEEEEEECC
Q ss_conf 99989999879929999889
Q 002591 845 TYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 845 ~g~~lit~s~dg~I~iwdl~ 864 (903)
++.+|++++.|+.|++||+.
T Consensus 279 ~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 279 NETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp ETTEEEEEETTSCEEEEECC
T ss_pred CCCEEEEEECCCEEEEEECC
T ss_conf 98999999289979999444
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-29 Score=202.26 Aligned_cols=209 Identities=16% Similarity=0.277 Sum_probs=144.2
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEEC--CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCE-EEEEECCCCEE
Q ss_conf 364474149998699999489999999958--992999978999234784158997689999999998-99994899399
Q 002591 614 KEANSVRASTSKVICCHFSSDGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFDKTVR 690 (903)
Q Consensus 614 ~~~~~l~~H~~~V~~i~fspdg~~Latgs~--Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~-Lasgs~Dg~I~ 690 (903)
.....+..|.++|.+++|++++++|++++. ++.+++|+.++++.+..+.+|...|++++|++++.+ +++++.|+.|+
T Consensus 106 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~ 185 (325)
T d1pgua1 106 NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV 185 (325)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEE
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 02541136567377999899988220100124404788850233110012001234321111234320688862111221
Q ss_pred EEECCCCCCEEEE---ECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 9948999952588---4268886589996389990999980899299999589905688635810699914999899997
Q 002591 691 VWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 767 (903)
Q Consensus 691 IWdl~~~~~~~~~---~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~~~~~i~~sp~~~~ll~~s 767 (903)
+||... .+.... ...|...|.+++|+|+...++++++.|+.|++||+++++++..+.++...
T Consensus 186 ~~d~~~-~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~-------------- 250 (325)
T d1pgua1 186 FYQGPP-FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP-------------- 250 (325)
T ss_dssp EEETTT-BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBC--------------
T ss_pred CCCCCC-CCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCC--------------
T ss_conf 111221-10000000015777752776303453100001123321013430012221111111111--------------
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCC--EE--EEEE
Q ss_conf 69929999889970899950799884899992899999999399-2999987889986137884039995--39--9999
Q 002591 768 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FH--SCVF 842 (903)
Q Consensus 768 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~--i~--~i~~ 842 (903)
+...+.+++| +++.+|++++.| .|+|||++++ +++..+..+... +. ++.+
T Consensus 251 ---------------------v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~ 305 (325)
T d1pgua1 251 ---------------------VQGGIFALSW-LDSQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVA 305 (325)
T ss_dssp ---------------------CCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEE
T ss_pred ---------------------CCCCEEEEEC-CCCCEEEEEECCCEEEEEECCCC---CEEEEEEECCCCCCCEEEEEEE
T ss_conf ---------------------1110000003-68999999958993999999999---7889999548740676999998
Q ss_pred ECCCCEEEEEECCCEEEEEEC
Q ss_conf 179998999987992999988
Q 002591 843 HPTYPSLLVIGCYQSLELWNM 863 (903)
Q Consensus 843 sp~g~~lit~s~dg~I~iwdl 863 (903)
.+ ..+|++++.|+.|++||+
T Consensus 306 ~~-~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 306 TG-NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EE-TTEEEEEETTSCEEEEET
T ss_pred CC-CCEEEEEECCCEEEEEEC
T ss_conf 89-999999979999999979
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.7e-29 Score=196.85 Aligned_cols=299 Identities=20% Similarity=0.324 Sum_probs=190.5
Q ss_pred EEEECCCCEEC---CCCCEEEECCCCHHHHHHCCCCCCCCCCCCEEEEEECCCC---CCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 99808981102---6998144177602655100000268877756786415999---97678774410135742036447
Q 002591 545 MFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDT---DPRDAGGRGMDVSQGFSFKEANS 618 (903)
Q Consensus 545 ~~s~dg~~~~~---~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~d~~---~~~~~~~~~~d~~~~~~~~~~~~ 618 (903)
+++.+|.++++ ++.++|||+.+++....+. .+...|.+....++. ...|...+.|+.. .......
T Consensus 22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~------~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~---~~~~~~~ 92 (342)
T d2ovrb2 22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV------GHTGGVWSSQMRDNIIISGSTDRTLKVWNAE---TGECIHT 92 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECC------CCSSCEEEEEEETTEEEEEETTSCEEEEETT---TTEEEEE
T ss_pred EEEECCCEEEEEECCCEEEEEECCCCCEEEEEE------CCCCCEEEEEECCCCCCCCEECCCCCCCCCC---CCCCEEC
T ss_conf 999789999999189909999899997999994------8899989999479863210000011111111---0000000
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 41499986999994899999999589929999789992347841589976899999999989999489939999489999
Q 002591 619 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 698 (903)
Q Consensus 619 l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWdl~~~~ 698 (903)
...+...+....+.. ..++.+..|+.|.+|+..+++....+......... +......+++++.|+.|++||... .
T Consensus 93 ~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~i~~~d~~~-~ 167 (342)
T d2ovrb2 93 LYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPET-E 167 (342)
T ss_dssp ECCCSSCEEEEEEET--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE--EEECSSCEEEEETTSCEEEEEGGG-T
T ss_pred CCCCCEEEEEEECCC--CCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEE--ECCCCCEEEEECCCCEEEEEECCC-C
T ss_conf 123330476520246--52212344403787403556300111001111000--001333024335898699952523-4
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC-EEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 52588426888658999638999099998089929999958990568863581-06999149998999976992999988
Q 002591 699 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT-AQMRFQPHLGRYLAAAAENVVSILDA 777 (903)
Q Consensus 699 ~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~~~-~~i~~sp~~~~ll~~s~dg~I~i~D~ 777 (903)
..+..+.+|...+..+.+. +. .+++++.||.|++||++..+++..+..+. ...++.++++.+++++.|+.|++||.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~--~~-~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~ 244 (342)
T d2ovrb2 168 TCLHTLQGHTNRVYSLQFD--GI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 244 (342)
T ss_dssp EEEEEECCCSSCEEEEEEC--SS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEEEEECCCCCCCCCCCCC--CC-EEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCEEEEEEC
T ss_conf 3667872754442100689--99-99999589939995255653656741665320577068999999748988999865
Q ss_pred CCCEEEEEECC---CCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEE-----CCCCCEEEEEEECCCCE
Q ss_conf 99708999507---99884899992899999999399-29999878899861378840-----39995399999179998
Q 002591 778 ETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-----CNGNKFHSCVFHPTYPS 848 (903)
Q Consensus 778 ~t~~~~~~l~~---h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~-----~~~~~i~~i~~sp~g~~ 848 (903)
...+....+.. |...+.++.++ ++++++++.| .|++||++++ +++..+. .|...|.+++|+|++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg---~~i~~~~~~~~~~~~~~v~~v~~s~~~~~ 319 (342)
T d2ovrb2 245 KTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG---EFIRNLVTLESGGSGGVVWRIRASNTKLV 319 (342)
T ss_dssp TTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC---CEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred CCCCCCCCCCCCCEEEECEEECCCC--CCEEEEECCCCEEEEEECCCC---CEEEEEECCCCCCCCCCEEEEEECCCCCE
T ss_conf 5442211122100011010000137--984499908998999999999---79899862347898897899998799989
Q ss_pred EEEEECCC----EEEEEECCC
Q ss_conf 99998799----299998899
Q 002591 849 LLVIGCYQ----SLELWNMSE 865 (903)
Q Consensus 849 lit~s~dg----~I~iwdl~~ 865 (903)
+++++.|| .|++||+..
T Consensus 320 la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 320 CAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEEECSSSSSCCEEEEEECCC
T ss_pred EEEEECCCCCEEEEEEEECCC
T ss_conf 999968999704899993899
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.98 E-value=4.1e-31 Score=212.18 Aligned_cols=276 Identities=8% Similarity=-0.030 Sum_probs=205.8
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCC--CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 4999869999948999999995899--29999789992347841589976899999999989999489939999489999
Q 002591 621 ASTSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 698 (903)
Q Consensus 621 ~H~~~V~~i~fspdg~~Latgs~Dg--~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWdl~~~~ 698 (903)
+|...|.+++|+|||++|++++.+. .|++||..+++. ..+..|...|.+++|+|++++|++++.++.+++|++.+ .
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~-~ 117 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-G 117 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-C
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCE-EEEECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCC-C
T ss_conf 699988889998999999999928998999998999948-87508971277412114543210001111100000122-2
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEE---------ECCCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEEEEE
Q ss_conf 52588426888658999638999099998---------0899299999589905688635--810699914999899997
Q 002591 699 YSLRTFMGHSASVMSLDFHPNKDDLICSC---------DGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAA 767 (903)
Q Consensus 699 ~~~~~~~~h~~~V~si~fsp~~~~ll~sg---------s~Dg~I~iwDi~~~~~~~~~~~--~~~~i~~sp~~~~ll~~s 767 (903)
.....+..+...+.+++|+|++..++++. ..++.+++|++.+++....... ....+.|++++..+++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s 197 (360)
T d1k32a3 118 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS 197 (360)
T ss_dssp CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred CEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 10000001355202301213225665212331211000256542663045571353035432211001257799999995
Q ss_pred CCCEEEEEECCCCEE-------EEEECCCCCCEEEEEECCCCCEEEEEECC----EEEEEECCCCCCCCEEEEEECCCCC
Q ss_conf 699299998899708-------99950799884899992899999999399----2999987889986137884039995
Q 002591 768 AENVVSILDAETQAC-------RLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 836 (903)
Q Consensus 768 ~dg~I~i~D~~t~~~-------~~~l~~h~~~V~si~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~ 836 (903)
.++.+.+|+...... ...+..+...+..+.|++++..++++..+ ..++|.+.... .....+..+...
T Consensus 198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 275 (360)
T d1k32a3 198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP--GDYRMIIPLESS 275 (360)
T ss_dssp SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC--BCEEEEEECSSE
T ss_pred CCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCEEECCCCCCEEECCCCC--CCEEEEEECCCC
T ss_conf 998557533354402320364117985246960120687776715531136526654001012476--752675413898
Q ss_pred EEEEEEECCC---CEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 3999991799---989999879929999889990889815789778999936999999995698399909
Q 002591 837 FHSCVFHPTY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 837 i~~i~~sp~g---~~lit~s~dg~I~iwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+..+.+...+ .+++.++.++.|++||+.+++...+. +.|.+++|+|||++|++++.||.|++|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~v~~~~~SpDG~~l~~~~~Dg~i~v~d 342 (360)
T d1k32a3 276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRKDDGKIYTFP 342 (360)
T ss_dssp EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEC---CCCCEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 569999735997069996489987999979997498864---8868799999898999997899499999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.7e-26 Score=182.35 Aligned_cols=240 Identities=21% Similarity=0.403 Sum_probs=193.9
Q ss_pred CEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 20364474149998699999489999999958992999978999234784158997689999999998999948993999
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~I 691 (903)
+.+.+.++++|.+.|+|++| ++++|++|+.|+.|++|++..+........+.....+ +......++++..++.+++
T Consensus 44 ~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 119 (293)
T d1p22a2 44 TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH--LRFNNGMMVTCSKDRSIAV 119 (293)
T ss_dssp SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE--EECCTTEEEEEETTSCEEE
T ss_pred CCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEEECCCCCCEEE
T ss_conf 99199999267787763423--6300210011101100000246410011111100001--1111100000135663068
Q ss_pred EECCCCC--CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEE-EEECCCCEEEEEEC
Q ss_conf 9489999--52588426888658999638999099998089929999958990568863581069-99149998999976
Q 002591 692 WDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM-RFQPHLGRYLAAAA 768 (903)
Q Consensus 692 Wdl~~~~--~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~~~~~i-~~sp~~~~ll~~s~ 768 (903)
|+..... .....+..|...|.++.+.+. .+++++.|+.|++||+++.+++..+.+....+ .+.+.+..+++++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 196 (293)
T d1p22a2 120 WDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSS 196 (293)
T ss_dssp EECSSSSCCEEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEET
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEECCC---CCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEEECC
T ss_conf 613445444212100011354311000002---20110699860410078883889971554453221689875887658
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCC------CCCEEEEEECCCCCEEEEE
Q ss_conf 9929999889970899950799884899992899999999399-29999878899------8613788403999539999
Q 002591 769 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS------EGECVHELSCNGNKFHSCV 841 (903)
Q Consensus 769 dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~------~~~~i~~~~~~~~~i~~i~ 841 (903)
|+.|++||+++...+..+.++...+.. +.+++.+|++++.| .|++||+.... ...++..+..|...|.+++
T Consensus 197 dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~ 274 (293)
T d1p22a2 197 DNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ 274 (293)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE
T ss_pred CCEEEEEECCCCEEEEEECCCCEEEEE--CCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEE
T ss_conf 998999866556146652143100000--145410799986799799998888864445677545578458899889999
Q ss_pred EECCCCEEEEEECCCEEEEEE
Q ss_conf 917999899998799299998
Q 002591 842 FHPTYPSLLVIGCYQSLELWN 862 (903)
Q Consensus 842 ~sp~g~~lit~s~dg~I~iwd 862 (903)
|+ +.+|++++.|+.|++||
T Consensus 275 ~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 275 FD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EC--SSCEEECCSSSEEEEEC
T ss_pred EC--CCEEEEEECCCEEEEEC
T ss_conf 71--99999992299899959
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.7e-28 Score=195.27 Aligned_cols=292 Identities=10% Similarity=0.071 Sum_probs=200.0
Q ss_pred CCCCCEEEEEECCCCEEC---CCCCEEEECCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 999440899808981102---69981441776026551000002688777567864159999767877441013574203
Q 002591 538 TTSKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFK 614 (903)
Q Consensus 538 ~~~~~~i~~s~dg~~~~~---~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~d~~~~~~~~~~~~d~~~~~~~~ 614 (903)
......+.|+|++.++++ ++.++|||+.... ...
T Consensus 11 ~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~-------------------------------------------~~~ 47 (342)
T d1yfqa_ 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA-------------------------------------------KNV 47 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT-------------------------------------------TEE
T ss_pred CCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC-------------------------------------------CCE
T ss_conf 8978889995899999999799929999756998-------------------------------------------636
Q ss_pred EEEEEECCCCCEEEEEECCCC-CEEEEEECCCCEEEEECCCCCEEEEECCCCC-CEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 644741499986999994899-9999995899299997899923478415899-76899999999989999489939999
Q 002591 615 EANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSPSMPRLATSSFDKTVRVW 692 (903)
Q Consensus 615 ~~~~l~~H~~~V~~i~fspdg-~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~-~V~~i~fspdg~~Lasgs~Dg~I~IW 692 (903)
......+|..+|+|++|++++ .+|++|+.|+.|++|+............+.. ......+.++...+++++.|+.+++|
T Consensus 48 ~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 127 (342)
T d1yfqa_ 48 DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127 (342)
T ss_dssp EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEE
T ss_pred EEEEECCCCCCEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 89885589998899999589997899812653114542044320000011111111111111111111110122211102
Q ss_pred ECCCCCCEE---EEECCC--CCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE------CCCEEEEEE-CCC
Q ss_conf 489999525---884268--88658999638999099998089929999958990568863------581069991-499
Q 002591 693 DADNPGYSL---RTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------GGTAQMRFQ-PHL 760 (903)
Q Consensus 693 dl~~~~~~~---~~~~~h--~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~------~~~~~i~~s-p~~ 760 (903)
|++...... .....+ ......+.+.+... .+++++.|+.|++|+++......... .......+. .++
T Consensus 128 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (342)
T d1yfqa_ 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ 206 (342)
T ss_dssp CHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred ECCCCCCCEEEECCCCCCCCCCEEEEEEEECCCC-CEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCC
T ss_conf 0234443302300024300120000010001687-024651798478876056763411121025422101467636999
Q ss_pred CEEEEEECCCEEEEEECCCCEE---------EE------EECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCC
Q ss_conf 9899997699299998899708---------99------950799884899992899999999399-2999987889986
Q 002591 761 GRYLAAAAENVVSILDAETQAC---------RL------SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG 824 (903)
Q Consensus 761 ~~ll~~s~dg~I~i~D~~t~~~---------~~------~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~ 824 (903)
..+++++.++.+.+|+...... .. ....|...|++++|+|++.+|++++.| .|++||+.++
T Consensus 207 ~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~--- 283 (342)
T d1yfqa_ 207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR--- 283 (342)
T ss_dssp CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---
T ss_pred CEEEEECCCCEEEEEEECCCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCC---
T ss_conf 87886548995999980598640111235125655531477762354315996698447999879998999999989---
Q ss_pred CEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEE
Q ss_conf 13788403999539999917999899998799299998899908898157897789
Q 002591 825 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA 880 (903)
Q Consensus 825 ~~i~~~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~~~~~h~~~V~s 880 (903)
+.+..+.. ......++|++++..+++++.|+.+++|...... +..|...|..
T Consensus 284 ~~l~~~~~-~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~~---~~~~~~~i~~ 335 (342)
T d1yfqa_ 284 KKIKNFAK-FNEDSVVKIACSDNILCLATSDDTFKTNAAIDQT---IELNASSIYI 335 (342)
T ss_dssp EEEEECCC-CSSSEEEEEEECSSEEEEEEECTHHHHCSSSCTT---SCCCCCEEEE
T ss_pred CEEEEECC-CCCCEEEEEEECCCEEEEEECCCCEEEEEEECCC---CCCCCCEEEE
T ss_conf 49887058-9998799999479999999919927883012787---6689986999
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.4e-28 Score=195.74 Aligned_cols=213 Identities=18% Similarity=0.225 Sum_probs=154.1
Q ss_pred CCEEEEEECCCCEEEEECCCCCEEEEE----------CCCCCCEEEEEECCC-----CCEEEEEECCCCEEEEECCCCCC
Q ss_conf 999999958992999978999234784----------158997689999999-----99899994899399994899995
Q 002591 635 GKLLATGGHDKKAVLWHTDTLKSKTNL----------EEHSSLITDVRFSPS-----MPRLATSSFDKTVRVWDADNPGY 699 (903)
Q Consensus 635 g~~Latgs~Dg~I~IWd~~t~~~~~~l----------~~h~~~V~~i~fspd-----g~~Lasgs~Dg~I~IWdl~~~~~ 699 (903)
+.++++++.||.|++|++........+ ..+...+..++|.++ +.++++++.||.|++|++.....
T Consensus 79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~ 158 (393)
T d1sq9a_ 79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 158 (393)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred CCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCC
T ss_conf 76899994899199998228982056512456324311578966899984478865421799983898199987404775
Q ss_pred -----------------EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE---------CCCEE
Q ss_conf -----------------2588426888658999638999099998089929999958990568863---------58106
Q 002591 700 -----------------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTAQ 753 (903)
Q Consensus 700 -----------------~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~---------~~~~~ 753 (903)
.......+...+.+++|+|++ ++++|+.|+.|++||+.+++++..+. ..+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~ 236 (393)
T d1sq9a_ 159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236 (393)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred CCCEEEEEECCCEECCCCEECCCCCCCCEEEEEECCCC--EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 34102331032000145100025789867899978999--8999938982999860233211000011111242563877
Q ss_pred EEEECCCCEEEEEECCC---EEEEEECCCCEEEEEEC-------------CCCCCEEEEEECCCCCEEEEEECC-EEEEE
Q ss_conf 99914999899997699---29999889970899950-------------799884899992899999999399-29999
Q 002591 754 MRFQPHLGRYLAAAAEN---VVSILDAETQACRLSLQ-------------GHTKPIDSVCWDPSGELLASVSED-SVRVW 816 (903)
Q Consensus 754 i~~sp~~~~ll~~s~dg---~I~i~D~~t~~~~~~l~-------------~h~~~V~si~~spdg~~lasgs~d-~I~iw 816 (903)
++|+|++..+++++.|+ .|++||++++.++..+. +|...|++++|+|++++|++++.| +|++|
T Consensus 237 l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vW 316 (393)
T d1sq9a_ 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 316 (393)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEE
T ss_conf 00466532011242898842100103532134443115666643102320235866600138988806987799989999
Q ss_pred ECCCCCCCCEEEEEECCCCCEE----EEEEECCCCEEEEE
Q ss_conf 8788998613788403999539----99991799989999
Q 002591 817 TVGSGSEGECVHELSCNGNKFH----SCVFHPTYPSLLVI 852 (903)
Q Consensus 817 dl~s~~~~~~i~~~~~~~~~i~----~i~~sp~g~~lit~ 852 (903)
|+.++ .++..+.+|...|. .++|.+++..++++
T Consensus 317 d~~~g---~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 317 DVKTK---ERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp ETTTT---EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred ECCCC---CEEEEECCCCCCCCCCCCEEEECCCCCEEEEC
T ss_conf 99999---79999988687613773489999999999983
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=5.2e-27 Score=185.71 Aligned_cols=290 Identities=12% Similarity=0.063 Sum_probs=199.8
Q ss_pred CEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE-----CCCCCCEEEEEECCCCCEEEEE-EC
Q ss_conf 20364474149998699999489999999958992999978999234784-----1589976899999999989999-48
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-----EEHSSLITDVRFSPSMPRLATS-SF 685 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l-----~~h~~~V~~i~fspdg~~Lasg-s~ 685 (903)
+.+.+.++..|. .+..++|+|||++|++++.|++|++||+.+++..... .+|...+.++.|+|||++|+++ ..
T Consensus 51 t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~ 129 (426)
T d1hzua2 51 SKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW 129 (426)
T ss_dssp TCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred CCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECC
T ss_conf 995999996899-8038999899999999958998899975688604899986788876458850026889879996358
Q ss_pred CCCEEEEECCCCCCEEEEECCCCCCE-----------EEEEECCCCCEEEEEEECCCCEEEEECCCCEEEE--EE--ECC
Q ss_conf 99399994899995258842688865-----------8999638999099998089929999958990568--86--358
Q 002591 686 DKTVRVWDADNPGYSLRTFMGHSASV-----------MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VF--KGG 750 (903)
Q Consensus 686 Dg~I~IWdl~~~~~~~~~~~~h~~~V-----------~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~--~~--~~~ 750 (903)
++.+++||... ..+...+..+...+ ..+.+++++..++++....+.+.+++........ .+ ...
T Consensus 130 ~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 208 (426)
T d1hzua2 130 PPQFAIMDGET-LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPF 208 (426)
T ss_dssp SSEEEEEETTT-CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSS
T ss_pred CCEEEEECCCC-CCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCC
T ss_conf 97699985776-41257862267773643642788503899878787888852789769999924665204577566775
Q ss_pred CEEEEEECCCCEEEEEEC-CCEEEEEECCCCEEEEEECCC--CCCEEEEEECCCCC--EEEE-EECC-EEEEEECCCCC-
Q ss_conf 106999149998999976-992999988997089995079--98848999928999--9999-9399-29999878899-
Q 002591 751 TAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGH--TKPIDSVCWDPSGE--LLAS-VSED-SVRVWTVGSGS- 822 (903)
Q Consensus 751 ~~~i~~sp~~~~ll~~s~-dg~I~i~D~~t~~~~~~l~~h--~~~V~si~~spdg~--~las-gs~d-~I~iwdl~s~~- 822 (903)
...+.+.+++.+++++.. +..+.+++..+++.+..+... ......+.+...+. .++. ...+ .+.+|+.....
T Consensus 209 ~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~ 288 (426)
T d1hzua2 209 LADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH 288 (426)
T ss_dssp EEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTC
T ss_pred CEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCC
T ss_conf 37613778886788642011000000025562788750587444342011006987745774157896598852256652
Q ss_pred ---CCCEEEEEECCCCCEEEEEEECCCCEEEEE-------ECCCEEEEEECCCCCEE-EE---------CCCCCCEEEEE
Q ss_conf ---861378840399953999991799989999-------87992999988999088-98---------15789778999
Q 002591 823 ---EGECVHELSCNGNKFHSCVFHPTYPSLLVI-------GCYQSLELWNMSENKTM-TL---------TAHEGLIAALA 882 (903)
Q Consensus 823 ---~~~~i~~~~~~~~~i~~i~~sp~g~~lit~-------s~dg~I~iwdl~~~~~~-~~---------~~h~~~V~sl~ 882 (903)
.......+..|...+..++|+|++.++++. ..+++|++||+.+++.. ++ ..+...|..++
T Consensus 289 ~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~ 368 (426)
T d1hzua2 289 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE 368 (426)
T ss_dssp TTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEE
T ss_pred CCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEEE
T ss_conf 03302586898668876367874899861888506798802288799998987876708950211025677885189879
Q ss_pred EECCCCEEEEE-----ECCCCEEECC
Q ss_conf 93699999999-----5698399909
Q 002591 883 VSTETGYVASA-----SHDKFVKLWK 903 (903)
Q Consensus 883 ~spdg~~LaSg-----s~DG~I~IWd 903 (903)
|+|||++++.+ +.||.|+|||
T Consensus 369 fSpDGk~i~vs~~~~~~~~~~i~v~D 394 (426)
T d1hzua2 369 YNKRGDEVWFSVWNGKNDSSALVVVD 394 (426)
T ss_dssp ECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred ECCCCCEEEEEEECCCCCCCEEEEEE
T ss_conf 99999999999724888898299999
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.96 E-value=1.7e-24 Score=169.47 Aligned_cols=247 Identities=14% Similarity=0.181 Sum_probs=185.0
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEE-ECCCCEEEE
Q ss_conf 6447414999869999948999999-99589929999789992347841589976899999999989999-489939999
Q 002591 615 EANSVRASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVW 692 (903)
Q Consensus 615 ~~~~l~~H~~~V~~i~fspdg~~La-tgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~I~IW 692 (903)
.+.++... ..+..++|+|||++|+ ++..++.|++||+.+++.+.++..+.. +..+.|++++..++++ ..++.+.+|
T Consensus 24 ~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (301)
T d1l0qa2 24 VTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVI 101 (301)
T ss_dssp EEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEEECC-CCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 99999889-98369999289899999978999899999998941032000246-43110001111111111111001100
Q ss_pred ECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEEEEECC-
Q ss_conf 489999525884268886589996389990999980899299999589905688635--81069991499989999769-
Q 002591 693 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE- 769 (903)
Q Consensus 693 dl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~--~~~~i~~sp~~~~ll~~s~d- 769 (903)
+..+ +.....+. +...+.++.|++++..+++++..++.+.+|+..+......+.. ....+.+.+++..++++..+
T Consensus 102 ~~~~-~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (301)
T d1l0qa2 102 DTTS-NTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDS 179 (301)
T ss_dssp ETTT-TEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred CCCC-CEEEEECC-CCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEECCCC
T ss_conf 1243-02432024-444423787605897155420111100110001463035315678842888604654013101211
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC---C-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 92999988997089995079988489999289999999939---9-2999987889986137884039995399999179
Q 002591 770 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 845 (903)
Q Consensus 770 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~---d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~ 845 (903)
+.+.+|+.........+.. ...+..++|++++..++.+.. + .|++||+.++ +.+..+.. ...+..++|+|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~---~~~~~~~~-~~~~~~va~spd 254 (301)
T d1l0qa2 180 MSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITARIPV-GPDPAGIAVTPD 254 (301)
T ss_dssp TEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEEEEEEC-CSSEEEEEECTT
T ss_pred CCCCCCCCCCEEEEECCCC-CCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCC---EEEEEECC-CCCEEEEEEECC
T ss_conf 1111111110001110133-577503110111101111002100002323656998---19999848-998779999189
Q ss_pred CCEEEE-EECCCEEEEEECCCCCEEE
Q ss_conf 998999-9879929999889990889
Q 002591 846 YPSLLV-IGCYQSLELWNMSENKTMT 870 (903)
Q Consensus 846 g~~lit-~s~dg~I~iwdl~~~~~~~ 870 (903)
++++++ ++.++.|++||+.+++++.
T Consensus 255 g~~l~va~~~~~~i~v~D~~t~~~~~ 280 (301)
T d1l0qa2 255 GKKVYVALSFCNTVSVIDTATNTITA 280 (301)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCEEEE
T ss_conf 89999998999969999999995999
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=5.9e-26 Score=178.93 Aligned_cols=322 Identities=11% Similarity=0.049 Sum_probs=217.9
Q ss_pred CCCCEEEECCCCHHHHHHCCCCCCCCCCCCEE-EEEECCCCC----CCCCCCCCCCCCCCCC--EEEEEEEECCCCCEEE
Q ss_conf 69981441776026551000002688777567-864159999----7678774410135742--0364474149998699
Q 002591 556 SPSNQLWDDKDLELRADMDRLVEDGSLDDNVE-SFLSHDDTD----PRDAGGRGMDVSQGFS--FKEANSVRASTSKVIC 628 (903)
Q Consensus 556 ~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~-~~~~~d~~~----~~~~~~~~~d~~~~~~--~~~~~~l~~H~~~V~~ 628 (903)
++.++|||..+++....+.. + ..+. ..+++|+.. ..+...+.||+..+.. ...+....+|.+.+.+
T Consensus 41 dg~v~vwD~~t~~~~~~l~~----g---~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s 113 (426)
T d1hzua2 41 AGQIALVDGDSKKIVKVIDT----G---YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESS 113 (426)
T ss_dssp TTEEEEEETTTCSEEEEEEC----C---SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEEC----C---CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEE
T ss_conf 99799999999959999968----9---9803899989999999995899889997568860489998678887645885
Q ss_pred EEECCCCCEEEEE-ECCCCEEEEECCCCCEEEEECCCCC-----------CEEEEEECCCCCEEEEEEC-CCCEEEEECC
Q ss_conf 9994899999999-5899299997899923478415899-----------7689999999998999948-9939999489
Q 002591 629 CHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSS-----------LITDVRFSPSMPRLATSSF-DKTVRVWDAD 695 (903)
Q Consensus 629 i~fspdg~~Latg-s~Dg~I~IWd~~t~~~~~~l~~h~~-----------~V~~i~fspdg~~Lasgs~-Dg~I~IWdl~ 695 (903)
++|+|||++|+++ ..++.+++||..++.++..+..+.. ....+.+++++..++.... .+.+.+++..
T Consensus 114 ~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~ 193 (426)
T d1hzua2 114 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 193 (426)
T ss_dssp CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECS
T ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEEC
T ss_conf 00268898799963589769998577641257862267773643642788503899878787888852789769999924
Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC-----CEEEEEECCCC-EEEEEE--
Q ss_conf 9995258842688865899963899909999808992999995899056886358-----10699914999-899997--
Q 002591 696 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-----TAQMRFQPHLG-RYLAAA-- 767 (903)
Q Consensus 696 ~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~~-----~~~i~~sp~~~-~ll~~s-- 767 (903)
...........+...+..+.|.|++.+++++...+..+.+|+..+++....+... .....+..... ...+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (426)
T d1hzua2 194 DIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273 (426)
T ss_dssp SSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECT
T ss_pred CCCCEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCC
T ss_conf 66520457756677537613778886788642011000000025562788750587444342011006987745774157
Q ss_pred CCCEEEEEECCC-------CEEEEEECCCCCCEEEEEECCCCCEEEEE-------ECC-EEEEEECCCCCCCCEEEE---
Q ss_conf 699299998899-------70899950799884899992899999999-------399-299998788998613788---
Q 002591 768 AENVVSILDAET-------QACRLSLQGHTKPIDSVCWDPSGELLASV-------SED-SVRVWTVGSGSEGECVHE--- 829 (903)
Q Consensus 768 ~dg~I~i~D~~t-------~~~~~~l~~h~~~V~si~~spdg~~lasg-------s~d-~I~iwdl~s~~~~~~i~~--- 829 (903)
.++.+.+|+... .+....+.+|...+..++|+|++.+|++. ..+ +|++||+.+++....+..
T Consensus 274 ~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~ 353 (426)
T d1hzua2 274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE 353 (426)
T ss_dssp TTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH
T ss_pred CCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCH
T ss_conf 89659885225665203302586898668876367874899861888506798802288799998987876708950211
Q ss_pred ---EECCCCCEEEEEEECCCCEEEEEE-----CCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEE
Q ss_conf ---403999539999917999899998-----7992999988999088-981578977899993699999
Q 002591 830 ---LSCNGNKFHSCVFHPTYPSLLVIG-----CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYV 890 (903)
Q Consensus 830 ---~~~~~~~i~~i~~sp~g~~lit~s-----~dg~I~iwdl~~~~~~-~~~~h~~~V~sl~~spdg~~L 890 (903)
+..+...+..++|+|+|+++++.+ .++.|++||..+.++. .+.++. .++|+|+|.
T Consensus 354 ~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 354 WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN 417 (426)
T ss_dssp HHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred HCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEECCCC------CCCCCCEEE
T ss_conf 0256778851898799999999999972488889829999999873899987898------419995575
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=1.7e-26 Score=182.35 Aligned_cols=287 Identities=11% Similarity=0.049 Sum_probs=196.0
Q ss_pred CEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE--EEE---CCCCCCEEEEEECCCCCEE-EEEEC
Q ss_conf 20364474149998699999489999999958992999978999234--784---1589976899999999989-99948
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNL---EEHSSLITDVRFSPSMPRL-ATSSF 685 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~--~~l---~~h~~~V~~i~fspdg~~L-asgs~ 685 (903)
+.+.+..+..|. .+..++|+|||++|++++.|+.|++||+.+++.. ..+ ..|...+.+..|+|||++| ++++.
T Consensus 51 t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~ 129 (432)
T d1qksa2 51 TYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW 129 (432)
T ss_dssp TCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred CCCEEEEEECCC-CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEECCCCCCCCEEEEECCC
T ss_conf 983999973799-7137998899999999828999789981089812889984488987769843218888889998178
Q ss_pred CCCEEEEECCCCCCEEEEECC-----------CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEE--EE--CC
Q ss_conf 993999948999952588426-----------8886589996389990999980899299999589905688--63--58
Q 002591 686 DKTVRVWDADNPGYSLRTFMG-----------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FK--GG 750 (903)
Q Consensus 686 Dg~I~IWdl~~~~~~~~~~~~-----------h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~--~~--~~ 750 (903)
++.|++||..+ +.++..+.. +......+.+++++..++++...++.|.+|+....+.... +. ..
T Consensus 130 ~~~v~i~d~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~ 208 (432)
T d1qksa2 130 PPQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF 208 (432)
T ss_dssp TTEEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSS
T ss_pred CCEEEEEECCC-CCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEEEECCCCC
T ss_conf 98279990765-54225402477643522016888505899878999899998168829999843787522799833675
Q ss_pred CEEEEEECCCCEEEEEEC-CCEEEEEECCCCEEEEEECC-----CCCCEEEEEECCCCCEEEEEEC-C-EEEEEECCCCC
Q ss_conf 106999149998999976-99299998899708999507-----9988489999289999999939-9-29999878899
Q 002591 751 TAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-----HTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGS 822 (903)
Q Consensus 751 ~~~i~~sp~~~~ll~~s~-dg~I~i~D~~t~~~~~~l~~-----h~~~V~si~~spdg~~lasgs~-d-~I~iwdl~s~~ 822 (903)
...+.++|++.++++++. ++.+.++|.++.+.+..+.. +........+...+.+.++... + .+.+|......
T Consensus 209 ~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~ 288 (432)
T d1qksa2 209 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG 288 (432)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred CCCCEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCCCCEECCCCCCCCEEEECCCCCCC
T ss_conf 42653889887999951666367776144526888721486224567664101489883102135688358762456655
Q ss_pred C----CCEEEEEECCCCCEE-------------------------EEEEECCCCEEEEEECCCEEEEEECCCCCEEEECC
Q ss_conf 8----613788403999539-------------------------99991799989999879929999889990889815
Q 002591 823 E----GECVHELSCNGNKFH-------------------------SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 873 (903)
Q Consensus 823 ~----~~~i~~~~~~~~~i~-------------------------~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~~~~~ 873 (903)
. ......+..+..... .++ .|++..+++++.|+.+++|++.++. .+..
T Consensus 289 ~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~-vpDg~~la~~s~d~~~k~w~~~~~~--~l~~ 365 (432)
T d1qksa2 289 HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVA-VFDIKAMTGDGSDPEFKTLPIAEWA--GITE 365 (432)
T ss_dssp CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEE-EEEGGGCCCSSSCCCEEEECHHHHH--TCCS
T ss_pred CCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCEEEEEE-EEECHHHCCCCCCCCEEECCCCCCC--CCCC
T ss_conf 546565777998868997688872688641021126788877035999-9962461045567844863343444--4578
Q ss_pred CCCCEEEEEEECCCCEEEEEE-----CCCCEEECC
Q ss_conf 789778999936999999995-----698399909
Q 002591 874 HEGLIAALAVSTETGYVASAS-----HDKFVKLWK 903 (903)
Q Consensus 874 h~~~V~sl~~spdg~~LaSgs-----~DG~I~IWd 903 (903)
|...|.+++|+|||++++.+. .+|.|.|||
T Consensus 366 ~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D 400 (432)
T d1qksa2 366 GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400 (432)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEE
T ss_conf 99868976798999999999704888888689999
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.8e-26 Score=180.11 Aligned_cols=228 Identities=11% Similarity=0.170 Sum_probs=179.3
Q ss_pred ECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf 14999869999948999999995899299997899923478415899768999999999899994899399994899995
Q 002591 620 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 699 (903)
Q Consensus 620 ~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWdl~~~~~ 699 (903)
++|...|.+++|+++. .+++++.|++|++|++... .....+.++.+.+++..++++. ++.+.+|+..+ +.
T Consensus 43 ~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~ 112 (287)
T d1pgua2 43 QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH-------EFGSQPKVASANNDGFTAVLTN-DDDLLILQSFT-GD 112 (287)
T ss_dssp CCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE-------ECSSCEEEEEECSSSEEEEEET-TSEEEEEETTT-CC
T ss_pred CCCCCCEEEEEECCCC-EEEEEEECCCCCCCCCCCC-------CCCCCEEEEEECCCCCEEEEEE-CCCCEEEECCC-EE
T ss_conf 8877878999965997-2898861012221111111-------1122101466416785699960-33210000110-03
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE----CCCEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 2588426888658999638999099998089929999958990568863----581069991499989999769929999
Q 002591 700 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSIL 775 (903)
Q Consensus 700 ~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~----~~~~~i~~sp~~~~ll~~s~dg~I~i~ 775 (903)
.+..+.. ...+. ++++++..+++++..++.|++|++........+. ..+.+++|+|++.++++++.++.|++|
T Consensus 113 ~~~~~~~-~~~~~--~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~ 189 (287)
T d1pgua2 113 IIKSVRL-NSPGS--AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY 189 (287)
T ss_dssp EEEEEEC-SSCEE--EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEECCC-CCEEE--EEECCCCCEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCE
T ss_conf 5431012-22035--65214751110002210002100012210001210247853699951676521101111110000
Q ss_pred ECCCCEEEEE-ECCCCCCEEEEEECCC----------CCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 8899708999-5079988489999289----------9999999399-29999878899861378840399953999991
Q 002591 776 DAETQACRLS-LQGHTKPIDSVCWDPS----------GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 843 (903)
Q Consensus 776 D~~t~~~~~~-l~~h~~~V~si~~spd----------g~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s 843 (903)
|..++..... +..|...|.+++|+|. +.+|++++.| .|++|+++.. ...+..+..|...|.++.|+
T Consensus 190 d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~--~~~~~~~~~h~~~V~~v~~~ 267 (287)
T d1pgua2 190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP--MKIIKALNAHKDGVNNLLWE 267 (287)
T ss_dssp ETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT--TCCEEETTSSTTCEEEEEEE
T ss_pred EECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCC--CEEEEEECCCCCCEEEEEEC
T ss_conf 0023321100011111111000001365410012678870276649995999888999--75899927878985899998
Q ss_pred CCCCEEEEEECCCEEEEEEC
Q ss_conf 79998999987992999988
Q 002591 844 PTYPSLLVIGCYQSLELWNM 863 (903)
Q Consensus 844 p~g~~lit~s~dg~I~iwdl 863 (903)
+++ .|++++.|+.|++|++
T Consensus 268 ~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 268 TPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ETT-EEEEEETTSCEEEEEE
T ss_pred CCC-EEEEEECCCEEEEEEE
T ss_conf 999-8999979992999997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=1.5e-25 Score=176.23 Aligned_cols=316 Identities=12% Similarity=0.047 Sum_probs=211.7
Q ss_pred CCCEEEEEE-CCCCEEC--CCCCEEEECCCCHHHHHHCCCCCCCCCCCCEEEE-EECCCCCCC----C--CCCCCCCCCC
Q ss_conf 944089980-8981102--6998144177602655100000268877756786-415999976----7--8774410135
Q 002591 540 SKPLMMFGT-DGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDTDPR----D--AGGRGMDVSQ 609 (903)
Q Consensus 540 ~~~~i~~s~-dg~~~~~--~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~-~~~d~~~~~----~--~~~~~~d~~~ 609 (903)
++...-|+| ||...+. .+.+.+||...+..+.. .+...+... +++|..... + ....+|+...
T Consensus 4 ~~~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~--------~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~ 75 (360)
T d1k32a3 4 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--------PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT 75 (360)
T ss_dssp GGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEEC--------SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT
T ss_pred HHHCCCCCCCCCCEEEEEECCEEEEEECCCCCEEEC--------CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 010051468899999999899699998999948991--------699988889998999999999928998999998999
Q ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE-----
Q ss_conf 742036447414999869999948999999995899299997899923478415899768999999999899994-----
Q 002591 610 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----- 684 (903)
Q Consensus 610 ~~~~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs----- 684 (903)
+ +...+..|...|.+++|+|++++|++++.++.+++|+..++.....+..|...+.+++|+|++++|+.+.
T Consensus 76 ~----~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~ 151 (360)
T d1k32a3 76 G----KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG 151 (360)
T ss_dssp C----CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSS
T ss_pred C----CEEEEECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCC
T ss_conf 9----488750897127741211454321000111110000012221000000135520230121322566521233121
Q ss_pred -----CCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEE-------EE---C
Q ss_conf -----89939999489999525884268886589996389990999980899299999589905688-------63---5
Q 002591 685 -----FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-------FK---G 749 (903)
Q Consensus 685 -----~Dg~I~IWdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~-------~~---~ 749 (903)
.++.+++|++.+ +. ...+..+...+.++.|+|++..+ ++++.++.+++|+......... .. .
T Consensus 152 ~~~~~~~~~~~v~d~~~-~~-~~~~~~~~~~~~~~~~spdg~~l-~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 228 (360)
T d1k32a3 152 ETDGYVMQAIHVYDMEG-RK-IFAATTENSHDYAPAFDADSKNL-YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG 228 (360)
T ss_dssp TTCSCCEEEEEEEETTT-TE-EEECSCSSSBEEEEEECTTSCEE-EEEESCCCCCEECSSSSCEECCSCBEEEEEESSTT
T ss_pred CEEECCCCCEEEECCCC-CC-EEEECCCCCCCCCCCCCCCCCEE-EEEECCCCEECCCCCCCCEEECCCCCEEEEECCCC
T ss_conf 10002565426630455-71-35303543221100125779999-99959985575333544023203641179852469
Q ss_pred CCEEEEEECCCCEEEEEECC-----CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCC---EEEEEECC-EEEEEECCC
Q ss_conf 81069991499989999769-----9299998899708999507998848999928999---99999399-299998788
Q 002591 750 GTAQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE---LLASVSED-SVRVWTVGS 820 (903)
Q Consensus 750 ~~~~i~~sp~~~~ll~~s~d-----g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~---~lasgs~d-~I~iwdl~s 820 (903)
....+.+++++..+..+..+ ..+..++...+... .+..+...+..+.+...+. ++++++.+ .|++||+.+
T Consensus 229 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 307 (360)
T d1k32a3 229 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR-MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT 307 (360)
T ss_dssp CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE-EEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT
T ss_pred CCCCCEECCCCCCCCCCCEEECCCCCCEEECCCCCCCEE-EEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCC
T ss_conf 601206877767155311365266540010124767526-7541389856999973599706999648998799997999
Q ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCE
Q ss_conf 9986137884039995399999179998999987992999988999088-981578977
Q 002591 821 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLI 878 (903)
Q Consensus 821 ~~~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~-~~~~h~~~V 878 (903)
++ . ..+ ...+..++|+||+++|++++.||.|++||+.+++.. ++..+..++
T Consensus 308 ~~---~-~~~---~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~ 359 (360)
T d1k32a3 308 RK---V-TEV---KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359 (360)
T ss_dssp CC---E-EEE---EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred CE---E-EEE---CCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCC
T ss_conf 74---9-886---4886879999989899999789949999999998545998416225
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=5.1e-23 Score=160.00 Aligned_cols=307 Identities=12% Similarity=0.068 Sum_probs=186.9
Q ss_pred CCCEEEECCCCHHHHHHCCCCCCCCCCCCEEE-EEECCCCC----CCCCCCCCCCCCCCC--CEEEEEEEECCCCCEEEE
Q ss_conf 99814417760265510000026887775678-64159999----767877441013574--203644741499986999
Q 002591 557 PSNQLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDDTD----PRDAGGRGMDVSQGF--SFKEANSVRASTSKVICC 629 (903)
Q Consensus 557 ~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~-~~~~d~~~----~~~~~~~~~d~~~~~--~~~~~~~l~~H~~~V~~i 629 (903)
+.+.|||.++++....+.. |. .+.. -+++|... ..+...+.|++..+- ...++.....|.+.+.+.
T Consensus 42 g~v~v~D~~t~~v~~~~~~----g~---~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~ 114 (432)
T d1qksa2 42 GQIALIDGSTYEIKTVLDT----GY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSK 114 (432)
T ss_dssp TEEEEEETTTCCEEEEEEC----SS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECC
T ss_pred CEEEEEECCCCCEEEEEEC----CC---CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEEC
T ss_conf 9799998999839999737----99---7137998899999999828999789981089812889984488987769843
Q ss_pred EECCCCCEE-EEEECCCCEEEEECCCCCEEEEECC-----------CCCCEEEEEECCCCCEEE-EEECCCCEEEEECCC
Q ss_conf 994899999-9995899299997899923478415-----------899768999999999899-994899399994899
Q 002591 630 HFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEE-----------HSSLITDVRFSPSMPRLA-TSSFDKTVRVWDADN 696 (903)
Q Consensus 630 ~fspdg~~L-atgs~Dg~I~IWd~~t~~~~~~l~~-----------h~~~V~~i~fspdg~~La-sgs~Dg~I~IWdl~~ 696 (903)
.|+|||++| +++..++.|+|||..+++.+..+.. +......+.+++++..++ +...++.|.+|+..+
T Consensus 115 ~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~ 194 (432)
T d1qksa2 115 MEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 194 (432)
T ss_dssp STTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC
T ss_pred CCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCC
T ss_conf 21888888999817898279990765542254024776435220168885058998789998999981688299998437
Q ss_pred CCCEEE-EECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC-------EEEEEECCCCEEEEEEC
Q ss_conf 995258-8426888658999638999099998089929999958990568863581-------06999149998999976
Q 002591 697 PGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT-------AQMRFQPHLGRYLAAAA 768 (903)
Q Consensus 697 ~~~~~~-~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~~~-------~~i~~sp~~~~ll~~s~ 768 (903)
. .... ....+...+.++.|+|++.++++++..+..+.++|....+.+..+..+. ......+..+.+.....
T Consensus 195 ~-~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 273 (432)
T d1qksa2 195 L-NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSH 273 (432)
T ss_dssp S-SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEB
T ss_pred C-CCCEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCCCCEECCCC
T ss_conf 8-752279983367542653889887999951666367776144526888721486224567664101489883102135
Q ss_pred --CCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCC---------------------CC
Q ss_conf --9929999889970899950799884899992899999999399-29999878899---------------------86
Q 002591 769 --ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS---------------------EG 824 (903)
Q Consensus 769 --dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~---------------------~~ 824 (903)
++.|.+|+...... ..+...+....+.+++..+++++.+ ..++|+..... ..
T Consensus 274 lg~~~v~~~~~~~~~~----~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d 349 (432)
T d1qksa2 274 MGDDSVALIGTDPEGH----PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD 349 (432)
T ss_dssp SSSSEEEEEECCTTTC----TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred CCCCEEEECCCCCCCC----CCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCEEEEEEEEECHHHCCCCCC
T ss_conf 6883587624566555----465657779988689976888726886410211267888770359999962461045567
Q ss_pred CEEE--------EEECCCCCEEEEEEECCCCEEEEEE-----CCCEEEEEECCCCCEEEECCCC
Q ss_conf 1378--------8403999539999917999899998-----7992999988999088981578
Q 002591 825 ECVH--------ELSCNGNKFHSCVFHPTYPSLLVIG-----CYQSLELWNMSENKTMTLTAHE 875 (903)
Q Consensus 825 ~~i~--------~~~~~~~~i~~i~~sp~g~~lit~s-----~dg~I~iwdl~~~~~~~~~~h~ 875 (903)
..++ .+..+...+..++|+|+|++++++. .++.|.|||..+.++.......
T Consensus 350 ~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 350 PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEECCC
T ss_conf 8448633434444578998689767989999999997048888886899999995588684688
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=2.4e-23 Score=162.10 Aligned_cols=237 Identities=12% Similarity=0.103 Sum_probs=131.7
Q ss_pred CCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEECCCCC-----CEEEEEECCCCCEEEEEE------------
Q ss_conf 99869999948999999-995899299997899923478415899-----768999999999899994------------
Q 002591 623 TSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPRLATSS------------ 684 (903)
Q Consensus 623 ~~~V~~i~fspdg~~La-tgs~Dg~I~IWd~~t~~~~~~l~~h~~-----~V~~i~fspdg~~Lasgs------------ 684 (903)
...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+.. .+..++|+|++++++++.
T Consensus 33 ~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T d1pbyb_ 33 GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred CCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCC
T ss_conf 99823799999989999997899949999999992988872477731254025489868775799950477620342034
Q ss_pred CCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC--EEEEEECCC--
Q ss_conf 8993999948999952588426888658999638999099998089929999958990568863581--069991499--
Q 002591 685 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT--AQMRFQPHL-- 760 (903)
Q Consensus 685 ~Dg~I~IWdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~~~--~~i~~sp~~-- 760 (903)
.+..+.+||..+ ......+. +...+.+++|++++..++ +++ +.+.+||..+++....+.... ....+.+++
T Consensus 113 ~~~~~~~~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l~-~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (337)
T d1pbyb_ 113 QPTRVALYDAET-LSRRKAFE-APRQITMLAWARDGSKLY-GLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA 187 (337)
T ss_dssp CCCEEEEEETTT-TEEEEEEE-CCSSCCCEEECTTSSCEE-EES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCC
T ss_pred CCCCEEECCCCC-CEEEEECC-CCCCCEEEEECCCCCEEE-EEC--CCCCEEEEECCCEEEEEECCCCCCCCEECCCCCE
T ss_conf 555212035667-75988414-568721899868888899-971--7750566303727888614775433113577631
Q ss_pred --------CE--------------EEEEECCCEEEEEECCCCEEEEE-ECCCCCCEEEEEECCCCCEEEEEECCEEEEEE
Q ss_conf --------98--------------99997699299998899708999-50799884899992899999999399299998
Q 002591 761 --------GR--------------YLAAAAENVVSILDAETQACRLS-LQGHTKPIDSVCWDPSGELLASVSEDSVRVWT 817 (903)
Q Consensus 761 --------~~--------------ll~~s~dg~I~i~D~~t~~~~~~-l~~h~~~V~si~~spdg~~lasgs~d~I~iwd 817 (903)
.. ......++.+.+|+..++..... +..+...+..+.+++++.++++.. +.|++||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~d 266 (337)
T d1pbyb_ 188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-NVLESFD 266 (337)
T ss_dssp CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-SEEEEEE
T ss_pred EECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCEEEEECC-CCEEEEE
T ss_conf 401466531246632444103660454036761799986888588898328875058887426613999735-5289998
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 7889986137884039995399999179998999987992999988999088
Q 002591 818 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 869 (903)
Q Consensus 818 l~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~ 869 (903)
+.++ ..+..+.. ...+.+++|+|+|++|++++.++.|++||..+.+.+
T Consensus 267 ~~~~---~~~~~~~~-~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 267 LEKN---ASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp TTTT---EEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCCC---CEEEEECC-CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE
T ss_conf 9889---69999748-998899999789999999949992999999987698
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=1.6e-21 Score=150.36 Aligned_cols=258 Identities=12% Similarity=0.134 Sum_probs=209.0
Q ss_pred EEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEE
Q ss_conf 99995899299997899923478415899768999999999899-99489939999489999525884268886589996
Q 002591 638 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 716 (903)
Q Consensus 638 Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~La-sgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~si~f 716 (903)
+++++.|++|.+||+++++.+.++... ..+..++|+||+++|+ +++.++.|++||+.+ ...+..+..+. .+..+.|
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t-~~~~~~~~~~~-~~~~~~~ 81 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPAGS-SPQGVAV 81 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEECSS-SEEEEEE
T ss_pred EEEECCCCEEEEEECCCCEEEEEEECC-CCCEEEEEECCCCEEEEEECCCCEEEEEECCC-CCEEEEEECCC-CCCCCCC
T ss_conf 999789998999999999599999889-98369999289899999978999899999998-94103200024-6431100
Q ss_pred CCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEEEEEC-CCEEEEEECCCCEEEEEECCCCCCE
Q ss_conf 389990999980899299999589905688635--8106999149998999976-9929999889970899950799884
Q 002591 717 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPI 793 (903)
Q Consensus 717 sp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~--~~~~i~~sp~~~~ll~~s~-dg~I~i~D~~t~~~~~~l~~h~~~V 793 (903)
++++..+++++..++.+.+|+..+++....+.. ....+.+++++..++++.. +..+.+|+..+...+..+.. ...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (301)
T d1l0qa2 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSP 160 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSE
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCC-CCCC
T ss_conf 011111111111110011001243024320244444237876058971554201111001100014630353156-7884
Q ss_pred EEEEECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECC---CEEEEEECCCCCE
Q ss_conf 899992899999999399--29999878899861378840399953999991799989999879---9299998899908
Q 002591 794 DSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKT 868 (903)
Q Consensus 794 ~si~~spdg~~lasgs~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s~d---g~I~iwdl~~~~~ 868 (903)
..+.+++++..++++..+ .+.+|+.... ........ ......++|++++..++++..+ +.|++||+.+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~ 236 (301)
T d1l0qa2 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred EEEEEECCCCCEEEECCCCCCCCCCCCCCE---EEEECCCC-CCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEE
T ss_conf 288860465401310121111111111100---01110133-57750311011110111100210000232365699819
Q ss_pred EEECCCCCCEEEEEEECCCCEE-EEEECCCCEEECC
Q ss_conf 8981578977899993699999-9995698399909
Q 002591 869 MTLTAHEGLIAALAVSTETGYV-ASASHDKFVKLWK 903 (903)
Q Consensus 869 ~~~~~h~~~V~sl~~spdg~~L-aSgs~DG~I~IWd 903 (903)
+....+...+.+++|+||+++| ++++.|+.|++||
T Consensus 237 ~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D 272 (301)
T d1l0qa2 237 TARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVID 272 (301)
T ss_dssp EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 999848998779999189899999989999699999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.94 E-value=5.5e-24 Score=166.24 Aligned_cols=267 Identities=9% Similarity=0.027 Sum_probs=169.6
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC-CCCCCEEEEEECCCCCEEEE-EECCCCEEEEECCCCCCEEEEECC
Q ss_conf 9994899999999589929999789992347841-58997689999999998999-948993999948999952588426
Q 002591 629 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLAT-SSFDKTVRVWDADNPGYSLRTFMG 706 (903)
Q Consensus 629 i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~-~h~~~V~~i~fspdg~~Las-gs~Dg~I~IWdl~~~~~~~~~~~~ 706 (903)
++|++++++|++++.++.|.+||+++++.+.++. .+...+.+++|+||++++++ ++.++.|++||+.+ ++.+..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t-~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEES
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCC-CEEEEEECC
T ss_conf 5588999699998699979999999998999999489997045999789899999978999399996756-713123103
Q ss_pred CC------CCEEEEEECCCCCEEEEEE-----------ECCCCEEEEECCCCEEEEEEE-----CCCEEEEEECCCCEEE
Q ss_conf 88------8658999638999099998-----------089929999958990568863-----5810699914999899
Q 002591 707 HS------ASVMSLDFHPNKDDLICSC-----------DGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYL 764 (903)
Q Consensus 707 h~------~~V~si~fsp~~~~ll~sg-----------s~Dg~I~iwDi~~~~~~~~~~-----~~~~~i~~sp~~~~ll 764 (903)
.. ..+..+.|+|++..++++. ..+..+.+|+..+++....+. .....+.+.++ +.++
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 159 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD-GSLY 159 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT-SCEE
T ss_pred CCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCC-CEEE
T ss_conf 654345477417999905888899970577521565146762489985256326568873102474399995278-7899
Q ss_pred EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCE--------------------------EEEEECC-EEEEEE
Q ss_conf 9976992999988997089995079988489999289999--------------------------9999399-299998
Q 002591 765 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL--------------------------LASVSED-SVRVWT 817 (903)
Q Consensus 765 ~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~--------------------------lasgs~d-~I~iwd 817 (903)
+. +..+.+|+..+++.+..+..+.. ...+.++|++.. +++...+ .+.+|+
T Consensus 160 ~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
T d1jmxb_ 160 VA--GPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236 (346)
T ss_dssp EE--SSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EE--CCCCEEEECCCCCEEEEEECCCC-CCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEE
T ss_conf 84--79626998069978999964898-6623771255289998649981676512311126732575404783499997
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCC
Q ss_conf 78899861378840399953999991799989999879929999889990889815789778999936999999995698
Q 002591 818 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 897 (903)
Q Consensus 818 l~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG 897 (903)
+.++. ........+...+..+.+++++.+++.... +.|++||..+++.+....+...+.+++|+||+++|++++.|+
T Consensus 237 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~ 313 (346)
T d1jmxb_ 237 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN 313 (346)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSS
T ss_pred CCCCC--EEEEEEECCCCEEEEEEEECCCCEEEEECC-CEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 77883--687876315660688897179978999429-838999899993999974999778999968999999994899
Q ss_pred CEEECC
Q ss_conf 399909
Q 002591 898 FVKLWK 903 (903)
Q Consensus 898 ~I~IWd 903 (903)
.|++||
T Consensus 314 ~v~v~D 319 (346)
T d1jmxb_ 314 DLAVFN 319 (346)
T ss_dssp EEEEEE
T ss_pred CEEEEE
T ss_conf 299999
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.92 E-value=1.9e-20 Score=143.34 Aligned_cols=264 Identities=11% Similarity=0.027 Sum_probs=177.9
Q ss_pred CEEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCCEEEEECCCCCEEEEECCCCCCE-------EEEEEC
Q ss_conf 2036447414999869999948999999995----------89929999789992347841589976-------899999
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSSLI-------TDVRFS 674 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~i~fspdg~~Latgs----------~Dg~I~IWd~~t~~~~~~l~~h~~~V-------~~i~fs 674 (903)
+.+.+..+..+... .++|+|||++|++++ .++.|.+||..+++.+..+..+.... ..+.|+
T Consensus 56 tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s 133 (373)
T d2madh_ 56 SGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT 133 (373)
T ss_pred CCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEE
T ss_conf 99799999579886--0798689998999960577532124531899997778938889726885136851689708998
Q ss_pred CCCCEEEEEEC--CCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC-
Q ss_conf 99998999948--993999948999952588426888658999638999099998089929999958990568863581-
Q 002591 675 PSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT- 751 (903)
Q Consensus 675 pdg~~Lasgs~--Dg~I~IWdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~~~- 751 (903)
++++.++.... ++.+.+|+... ..... +.....++.|++++..++++.+.|+.+.+|+..............
T Consensus 134 ~dg~~~~v~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~ 208 (373)
T d2madh_ 134 PNNADLLFFQFAAGPAVGLVVQGG-SSDDQ----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAML 208 (373)
T ss_pred ECCCCEEEEEECCCCCEEEEECCC-CEEEE----EECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECC
T ss_conf 589937999986987467762368-72899----8245206999628991999994799399997477426678863003
Q ss_pred ------EEEE-EECCCCEEEEEECCCEEEEEECCCCEEEE--EECCCC----------CCEEEEEECCCCCEEE------
Q ss_conf ------0699-91499989999769929999889970899--950799----------8848999928999999------
Q 002591 752 ------AQMR-FQPHLGRYLAAAAENVVSILDAETQACRL--SLQGHT----------KPIDSVCWDPSGELLA------ 806 (903)
Q Consensus 752 ------~~i~-~sp~~~~ll~~s~dg~I~i~D~~t~~~~~--~l~~h~----------~~V~si~~spdg~~la------ 806 (903)
.... ....++.++....++.+.+|+........ .+..+. .....+++++++..++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 288 (373)
T d2madh_ 209 TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ 288 (373)
T ss_pred CCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
T ss_conf 66753043458878994299925896599997689907897763056475786641367413357714997599954888
Q ss_pred ----EEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEE--EEEECCCEEEEEECCCCCEE-EECCCCCCE
Q ss_conf ----99399-29999878899861378840399953999991799989--99987992999988999088-981578977
Q 002591 807 ----SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL--LVIGCYQSLELWNMSENKTM-TLTAHEGLI 878 (903)
Q Consensus 807 ----sgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l--it~s~dg~I~iwdl~~~~~~-~~~~h~~~V 878 (903)
....+ .+.+||..++ +.+..+. +...+..++|+||++.+ ++++.++.|++||+.+++.+ .+..+....
T Consensus 289 ~~~~~~~~~~~v~~~d~~t~---~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P 364 (373)
T d2madh_ 289 SAWKLHAAAKEVTSVTGLVG---QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGP 364 (373)
T ss_pred CEEEEECCCCEEEEEECCCC---CEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCC
T ss_conf 24786258986999989999---6989866-8998258999989998999996799929999999998999988889898
Q ss_pred EEEEEECC
Q ss_conf 89999369
Q 002591 879 AALAVSTE 886 (903)
Q Consensus 879 ~sl~~spd 886 (903)
..+++..+
T Consensus 365 ~~l~~~~~ 372 (373)
T d2madh_ 365 QVLSVMNE 372 (373)
T ss_pred CEEEEECC
T ss_conf 18998468
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.3e-19 Score=138.03 Aligned_cols=256 Identities=11% Similarity=0.134 Sum_probs=173.4
Q ss_pred EEEEEEEECCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEE---CCCCCCEEEEEECCCCCEEEEEEC-CC
Q ss_conf 036447414999869999948999999995-8992999978999234784---158997689999999998999948-99
Q 002591 613 FKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNL---EEHSSLITDVRFSPSMPRLATSSF-DK 687 (903)
Q Consensus 613 ~~~~~~l~~H~~~V~~i~fspdg~~Latgs-~Dg~I~IWd~~t~~~~~~l---~~h~~~V~~i~fspdg~~Lasgs~-Dg 687 (903)
++.+..+ .|.+.|.+++|+|||++|++++ .|+.|++|++.......++ ..+...+..++|+||+++|++++. ++
T Consensus 27 l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~ 105 (333)
T d1ri6a_ 27 LTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAG 105 (333)
T ss_dssp EEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTT
T ss_pred EEEEEEE-CCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEECCCCCEEEECCCCCC
T ss_conf 6999997-579988689995897999999778996999999689870798530136998549999599988742056888
Q ss_pred CEEEEECCCCCC-EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE-----E----CCCEEEEEE
Q ss_conf 399994899995-258842688865899963899909999808992999995899056886-----3----581069991
Q 002591 688 TVRVWDADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----K----GGTAQMRFQ 757 (903)
Q Consensus 688 ~I~IWdl~~~~~-~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~-----~----~~~~~i~~s 757 (903)
.|.+|+...... .......+...+.++.+++++..+++....+..|.+|+.......... . .....+.|+
T Consensus 106 ~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~ 185 (333)
T d1ri6a_ 106 NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH 185 (333)
T ss_dssp EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC
T ss_pred CEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCEEEECEEEEEECCCCCCEEEEE
T ss_conf 30220011100000010037785314988630101310256554205689732687410010001334038875279996
Q ss_pred CCCCEEEEEEC-CCEEEEEECCCCE----EEEEEC------CCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCC
Q ss_conf 49998999976-9929999889970----899950------799884899992899999999399--2999987889986
Q 002591 758 PHLGRYLAAAA-ENVVSILDAETQA----CRLSLQ------GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEG 824 (903)
Q Consensus 758 p~~~~ll~~s~-dg~I~i~D~~t~~----~~~~l~------~h~~~V~si~~spdg~~lasgs~d--~I~iwdl~s~~~~ 824 (903)
+++..++.... .+...+++..... ....+. ........+++++++++++..... .+.+|++......
T Consensus 186 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (333)
T d1ri6a_ 186 PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV 265 (333)
T ss_dssp TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC
T ss_pred CCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCCE
T ss_conf 02014786204667217885103555202100223430687765531268995156720550456882787887399978
Q ss_pred CEEEEEECCCCCEEEEEEECCCCEEEEEECC-CEEEEEE--CCCCCEE
Q ss_conf 1378840399953999991799989999879-9299998--8999088
Q 002591 825 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWN--MSENKTM 869 (903)
Q Consensus 825 ~~i~~~~~~~~~i~~i~~sp~g~~lit~s~d-g~I~iwd--l~~~~~~ 869 (903)
..+.........+..++|+|+|++|++++.+ +.|.+|+ ..++++.
T Consensus 266 ~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 266 LSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 313 (333)
T ss_dssp EEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEE
T ss_conf 999999678997628999079899999988999399999979999689
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=4.5e-20 Score=140.98 Aligned_cols=260 Identities=11% Similarity=0.084 Sum_probs=197.8
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEECCC--CCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCCEEEEECCCCC---
Q ss_conf 99999958992999978999234784158--99768999999999899-9948993999948999952588426888---
Q 002591 636 KLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSA--- 709 (903)
Q Consensus 636 ~~Latgs~Dg~I~IWd~~t~~~~~~l~~h--~~~V~~i~fspdg~~La-sgs~Dg~I~IWdl~~~~~~~~~~~~h~~--- 709 (903)
+++++++.|++|+|||+.+.+.+.++..+ ...+.+++|+||+++++ +++.++.|.+||+.+ ++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t-~~~~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBTTEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCC-CCEEEEEECCCCCCC
T ss_conf 6999976799899999999949999987788998237999999899999978999499999999-929888724777312
Q ss_pred --CEEEEEECCCCCEEEEEEE-----------CCCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEEEEECCCEEEE
Q ss_conf --6589996389990999980-----------899299999589905688635--8106999149998999976992999
Q 002591 710 --SVMSLDFHPNKDDLICSCD-----------GDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSI 774 (903)
Q Consensus 710 --~V~si~fsp~~~~ll~sgs-----------~Dg~I~iwDi~~~~~~~~~~~--~~~~i~~sp~~~~ll~~s~dg~I~i 774 (903)
.+..+.|+|++..++++.. .+..+.+||..++++...+.. ....+.+++++..+++++ +.+.+
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~ 158 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--RDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--SSEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCCCCCCEEEEECCCCCEEEEEC--CCCCE
T ss_conf 5402548986877579995047762034203455521203566775988414568721899868888899971--77505
Q ss_pred EECCCCEEEEEECCCCCCEEEEEECCCCC------------------------EEEEEECC-EEEEEECCCCCCCCEEEE
Q ss_conf 98899708999507998848999928999------------------------99999399-299998788998613788
Q 002591 775 LDAETQACRLSLQGHTKPIDSVCWDPSGE------------------------LLASVSED-SVRVWTVGSGSEGECVHE 829 (903)
Q Consensus 775 ~D~~t~~~~~~l~~h~~~V~si~~spdg~------------------------~lasgs~d-~I~iwdl~s~~~~~~i~~ 829 (903)
||..+++....+..+.... ...+.+++. .+.....+ .+.+|++..+. .....
T Consensus 159 ~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 235 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTTTT-TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--EEEEE
T ss_pred EEEECCCEEEEEECCCCCC-CCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCC--EEEEE
T ss_conf 6630372788861477543-31135776314014665312466324441036604540367617999868885--88898
Q ss_pred EECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 40399953999991799989999879929999889990889815789778999936999999995698399909
Q 002591 830 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 830 ~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
+..+...+..+.+++++.++++. ++.|++||+.+++.+....+...+.+++|+|||++|++++.|+.|++||
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D 307 (337)
T d1pbyb_ 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred ECCCCCCEEEEEECCCCEEEEEC--CCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 32887505888742661399973--5528999898896999974899889999978999999994999299999
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.90 E-value=1.6e-18 Score=131.07 Aligned_cols=279 Identities=10% Similarity=0.033 Sum_probs=197.2
Q ss_pred ECCCCCEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------
Q ss_conf 14999869999948999999995-----899299997899923478415899768999999999899994----------
Q 002591 620 RASTSKVICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS---------- 684 (903)
Q Consensus 620 ~~H~~~V~~i~fspdg~~Latgs-----~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs---------- 684 (903)
..+..++.+++++|||+.+++.. .++.|.+||..+++.+.++..+... .+.|+|||++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCCC
T ss_conf 56789865630189997899973422578765999989999799999579886--0798689998999960577532124
Q ss_pred CCCCEEEEECCCCCCEEEEECCCCCCE-------EEEEECCCCCEEEEEE-ECCCCEEEEECCCCEEEEEEECCCEEEEE
Q ss_conf 899399994899995258842688865-------8999638999099998-08992999995899056886358106999
Q 002591 685 FDKTVRVWDADNPGYSLRTFMGHSASV-------MSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKGGTAQMRF 756 (903)
Q Consensus 685 ~Dg~I~IWdl~~~~~~~~~~~~h~~~V-------~si~fsp~~~~ll~sg-s~Dg~I~iwDi~~~~~~~~~~~~~~~i~~ 756 (903)
.++.|.+||+.+ ++.+..+..+.... ..+.|++++..+++.. ..++.+.+|+....+....... ...+.+
T Consensus 95 ~~~~v~v~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 172 (373)
T d2madh_ 95 RTDYVEVFDPVT-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS-PTCYHI 172 (373)
T ss_pred CCEEEEEEECCC-CCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEECC-CEEEEE
T ss_conf 531899997778-938889726885136851689708998589937999986987467762368728998245-206999
Q ss_pred ECCCCEE-EEEECCCEEEEEECCCCEEEEEECCCC------CCEEEEEECCCCCEEEEEECCEEEEEECCCCCCCCEEEE
Q ss_conf 1499989-999769929999889970899950799------884899992899999999399299998788998613788
Q 002591 757 QPHLGRY-LAAAAENVVSILDAETQACRLSLQGHT------KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHE 829 (903)
Q Consensus 757 sp~~~~l-l~~s~dg~I~i~D~~t~~~~~~l~~h~------~~V~si~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~ 829 (903)
++++..+ ++...++.+.+|+............+. .....+.+.+++.+++....+.+.+|+...... ..+..
T Consensus 173 s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~ 251 (373)
T d2madh_ 173 HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAP 251 (373)
T ss_pred ECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCEE-EEEEE
T ss_conf 62899199999479939999747742667886300366753043458878994299925896599997689907-89776
Q ss_pred EECC----------CCCEEEEEEECCCCEEE----------EEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCC-
Q ss_conf 4039----------99539999917999899----------99879929999889990889815789778999936999-
Q 002591 830 LSCN----------GNKFHSCVFHPTYPSLL----------VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETG- 888 (903)
Q Consensus 830 ~~~~----------~~~i~~i~~sp~g~~li----------t~s~dg~I~iwdl~~~~~~~~~~h~~~V~sl~~spdg~- 888 (903)
.... ......+.+++++..++ ....++.|.+||..+++.+....+...+.+++|+|||+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~ 331 (373)
T d2madh_ 252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGP 331 (373)
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCE
T ss_conf 30564757866413674133577149975999548882478625898699998999969898668998258999989998
Q ss_pred -EEEEEECCCCEEECC
Q ss_conf -999995698399909
Q 002591 889 -YVASASHDKFVKLWK 903 (903)
Q Consensus 889 -~LaSgs~DG~I~IWd 903 (903)
++++++.|+.|++||
T Consensus 332 ~l~vt~~~d~~v~v~D 347 (373)
T d2madh_ 332 DLYALSAGTEVLHIYD 347 (373)
T ss_pred EEEEEECCCCEEEEEE
T ss_conf 9999967999299999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.89 E-value=1.1e-20 Score=144.93 Aligned_cols=251 Identities=11% Similarity=0.056 Sum_probs=175.3
Q ss_pred EEEEEEE-CCCCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEECCCC------CCEEEEEECCCCCEEEEEE-
Q ss_conf 3644741-4999869999948999999-99589929999789992347841589------9768999999999899994-
Q 002591 614 KEANSVR-ASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHS------SLITDVRFSPSMPRLATSS- 684 (903)
Q Consensus 614 ~~~~~l~-~H~~~V~~i~fspdg~~La-tgs~Dg~I~IWd~~t~~~~~~l~~h~------~~V~~i~fspdg~~Lasgs- 684 (903)
+.+.+++ .|...+.+++|+|||++++ ++..++.|++||+.+++.+..+.... ..+..+.|++|++++++++
T Consensus 29 ~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 29 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN 108 (346)
T ss_dssp EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred CEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEEC
T ss_conf 89999994899970459997898999999789993999967567131231036543454774179999058888999705
Q ss_pred -----------CCCCEEEEECCCCCCEEEEECC--CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC-
Q ss_conf -----------8993999948999952588426--88865899963899909999808992999995899056886358-
Q 002591 685 -----------FDKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG- 750 (903)
Q Consensus 685 -----------~Dg~I~IWdl~~~~~~~~~~~~--h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~~- 750 (903)
.+..+.+|+..+ +.....+.. ....+..+.+.+++. +++ . ++.+.+|++.+++.+..+..+
T Consensus 109 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~--~~~~~~~~~~~~~~~~~~~~~~ 183 (346)
T d1jmxb_ 109 PTQRLNDHYVVKPPRLEVFSTAD-GLEAKPVRTFPMPRQVYLMRAADDGS-LYV-A--GPDIYKMDVKTGKYTVALPLRN 183 (346)
T ss_dssp EEEECSSCEEECCCEEEEEEGGG-GGGBCCSEEEECCSSCCCEEECTTSC-EEE-E--SSSEEEECTTTCCEEEEECSTT
T ss_pred CCCCEEEEECCCCCEEEEEECCC-CEEEEEEEEEECCCCEEEEEECCCCE-EEE-E--CCCCEEEECCCCCEEEEEECCC
T ss_conf 77521565146762489985256-32656887310247439999527878-998-4--7962699806997899996489
Q ss_pred -CEEEEEECCCC--------------------------EEEEEECCCEEEEEECCCCEEEEE-ECCCCCCEEEEEECCCC
Q ss_conf -10699914999--------------------------899997699299998899708999-50799884899992899
Q 002591 751 -TAQMRFQPHLG--------------------------RYLAAAAENVVSILDAETQACRLS-LQGHTKPIDSVCWDPSG 802 (903)
Q Consensus 751 -~~~i~~sp~~~--------------------------~ll~~s~dg~I~i~D~~t~~~~~~-l~~h~~~V~si~~spdg 802 (903)
...+.+++++. .+..+..+..+.+|+..++..... +..+...+..+.+++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (346)
T d1jmxb_ 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD 263 (346)
T ss_dssp CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSC
T ss_pred CCCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCC
T ss_conf 86623771255289998649981676512311126732575404783499997778836878763156606888971799
Q ss_pred CEEEEEECCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECC
Q ss_conf 9999993992999987889986137884039995399999179998999987992999988999088-9815
Q 002591 803 ELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTA 873 (903)
Q Consensus 803 ~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~-~~~~ 873 (903)
.+++....+.|++||..++ +.+..+.. ...+.+++|+|+++++++++.++.|++||..+.+.+ .+..
T Consensus 264 ~~~~~~~~~~v~v~d~~~~---~~~~~~~~-~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~ 331 (346)
T d1jmxb_ 264 PNQIYGVLNRLAKYDLKQR---KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331 (346)
T ss_dssp TTEEEEEESEEEEEETTTT---EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred CEEEEECCCEEEEEECCCC---CEEEEECC-CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf 7899942983899989999---39999749-99778999968999999994899299999965879799988
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=6.8e-19 Score=133.38 Aligned_cols=267 Identities=12% Similarity=0.171 Sum_probs=186.5
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEE--CCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEECCCCCCEEE--EECCCCCCE
Q ss_conf 9999958992999978999234784--158997689999999998999948-99399994899995258--842688865
Q 002591 637 LLATGGHDKKAVLWHTDTLKSKTNL--EEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLR--TFMGHSASV 711 (903)
Q Consensus 637 ~Latgs~Dg~I~IWd~~t~~~~~~l--~~h~~~V~~i~fspdg~~Lasgs~-Dg~I~IWdl~~~~~~~~--~~~~h~~~V 711 (903)
.++++..|++|++|++.....+..+ ..+...+.+|+|+||+++|++++. |+.|++|++........ ....+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 99987899938999983999769999975799886899958979999997789969999996898707985301369985
Q ss_pred EEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE-----CCCEEEEEECCCCEEEEEEC-CCEEEEEECCCCEEEE-
Q ss_conf 8999638999099998089929999958990568863-----58106999149998999976-9929999889970899-
Q 002591 712 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRL- 784 (903)
Q Consensus 712 ~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~-----~~~~~i~~sp~~~~ll~~s~-dg~I~i~D~~t~~~~~- 784 (903)
..++|+|+++.+++++..++.|.+|+........... .....+.+++++..++++.. +..|.+|+........
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred EEEEECCCCCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCEE
T ss_conf 49999599988742056888302200111000000100377853149886301013102565542056897326874100
Q ss_pred -----EECCCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCCC-EEEEEE------CCCCCEEEEEEECCCCEEE
Q ss_conf -----950799884899992899999999399--29999878899861-378840------3999539999917999899
Q 002591 785 -----SLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGE-CVHELS------CNGNKFHSCVFHPTYPSLL 850 (903)
Q Consensus 785 -----~l~~h~~~V~si~~spdg~~lasgs~d--~I~iwdl~s~~~~~-~i~~~~------~~~~~i~~i~~sp~g~~li 850 (903)
...........++|++++.+++..... ...+|++....... ...... ........+++++++++++
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~ 245 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 245 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred EECEEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEE
T ss_conf 10001334038875279996020147862046672178851035552021002234306877655312689951567205
Q ss_pred EEEC-CCEEEEEECCCCCEE----EECCCCCCEEEEEEECCCCEEEEEEC-CCCEEECC
Q ss_conf 9987-992999988999088----98157897789999369999999956-98399909
Q 002591 851 VIGC-YQSLELWNMSENKTM----TLTAHEGLIAALAVSTETGYVASASH-DKFVKLWK 903 (903)
Q Consensus 851 t~s~-dg~I~iwdl~~~~~~----~~~~h~~~V~sl~~spdg~~LaSgs~-DG~I~IWd 903 (903)
+... ++.+.+|++...... ........+.+++|+|||++|++++. ++.|++|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~ 304 (333)
T d1ri6a_ 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304 (333)
T ss_dssp EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EECCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 50456882787887399978999999678997628999079899999988999399999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=1.8e-20 Score=143.55 Aligned_cols=264 Identities=10% Similarity=0.054 Sum_probs=165.6
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCCEEEEECCCCCEEEEECCCCC-------CEEEEEECCC
Q ss_conf 36447414999869999948999999995----------899299997899923478415899-------7689999999
Q 002591 614 KEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFSPS 676 (903)
Q Consensus 614 ~~~~~l~~H~~~V~~i~fspdg~~Latgs----------~Dg~I~IWd~~t~~~~~~l~~h~~-------~V~~i~fspd 676 (903)
+.+.++..+..+ .++|+|||++|++++ .|+.|++||+.+++.+..+..+.. ....+.|+++
T Consensus 39 ~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 116 (355)
T d2bbkh_ 39 RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD 116 (355)
T ss_dssp EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT
T ss_pred CEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECC
T ss_conf 499999899998--569948999999996777642015899989999999997988980588640311798734999338
Q ss_pred CCEEEEEEC--CCCEEEEECCCCCCEEEEECCCCCC-------EEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf 998999948--9939999489999525884268886-------5899963899909999808992999995899056886
Q 002591 677 MPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSAS-------VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 747 (903)
Q Consensus 677 g~~Lasgs~--Dg~I~IWdl~~~~~~~~~~~~h~~~-------V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~ 747 (903)
++++++++. +..+.+|+..+ +..+..+..+... ...+.+++++..+++....++.+.+++........
T Consensus 117 g~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~-- 193 (355)
T d2bbkh_ 117 GKTLLFYQFSPAPAVGVVDLEG-KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED-- 193 (355)
T ss_dssp SSEEEEEECSSSCEEEEEETTT-TEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT--
T ss_pred CCEEEEECCCCCCEEEEEECCC-CCEEEEEECCCCCEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEE--
T ss_conf 8715773279882045430578-8376677058740473069963699938999899983478737999624333000--
Q ss_pred ECCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEE--ECCCC----------CCEEEEEECCCCCEEEEEEC-----
Q ss_conf 35810699914999899997699299998899708999--50799----------88489999289999999939-----
Q 002591 748 KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS--LQGHT----------KPIDSVCWDPSGELLASVSE----- 810 (903)
Q Consensus 748 ~~~~~~i~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~--l~~h~----------~~V~si~~spdg~~lasgs~----- 810 (903)
...+....+...+..++.+..++.+++|+...+..... ...+. .....+++++++..++....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~ 273 (355)
T d2bbkh_ 194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 273 (355)
T ss_dssp SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred CCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCE
T ss_conf 11061021538997388746998299996589907998445784412685433035108999807997678874068712
Q ss_pred ------CEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCE--EEEEECCCEEEEEECCCCCEE-EECCCCCCEEEE
Q ss_conf ------92999987889986137884039995399999179998--999987992999988999088-981578977899
Q 002591 811 ------DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS--LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAAL 881 (903)
Q Consensus 811 ------d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~--lit~s~dg~I~iwdl~~~~~~-~~~~h~~~V~sl 881 (903)
+.|.+||..++ +.+..+.. ...+.+++|+|+++. ++++..++.|++||+.+++.+ .+..+......+
T Consensus 274 ~~~~~~~~v~v~d~~t~---~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i 349 (355)
T d2bbkh_ 274 RHKTASRFVVVLDAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVI 349 (355)
T ss_dssp CTTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEE
T ss_pred EECCCCCEEEEEECCCC---CEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCEE
T ss_conf 65179975999867888---49899668-998779999289996999997899989999999998999992869796589
Q ss_pred EEECC
Q ss_conf 99369
Q 002591 882 AVSTE 886 (903)
Q Consensus 882 ~~spd 886 (903)
.+..+
T Consensus 350 ~~~d~ 354 (355)
T d2bbkh_ 350 TTADM 354 (355)
T ss_dssp ECCCC
T ss_pred EECCC
T ss_conf 96999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.83 E-value=2.6e-17 Score=123.24 Aligned_cols=275 Identities=8% Similarity=0.052 Sum_probs=187.7
Q ss_pred CEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCCE
Q ss_conf 869999948999999995-----899299997899923478415899768999999999899994----------89939
Q 002591 625 KVICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTV 689 (903)
Q Consensus 625 ~V~~i~fspdg~~Latgs-----~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs----------~Dg~I 689 (903)
++.-.+.+||++.+++.. .+..|.+||..+++.+.++..+... .++|+||+++|++.+ .|+.|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf 717476589999999982664777671999999999499999899998--569948999999996777642015899989
Q ss_pred EEEECCCCCCEEEEECCCC-------CCEEEEEECCCCCEEEEEE-ECCCCEEEEECCCCEEEEEEECCCEEEEEECCCC
Q ss_conf 9994899995258842688-------8658999638999099998-0899299999589905688635810699914999
Q 002591 690 RVWDADNPGYSLRTFMGHS-------ASVMSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG 761 (903)
Q Consensus 690 ~IWdl~~~~~~~~~~~~h~-------~~V~si~fsp~~~~ll~sg-s~Dg~I~iwDi~~~~~~~~~~~~~~~i~~sp~~~ 761 (903)
++||+.+ ++.+..+..+. .....+.|++++..+++.. +.+..+.+|+..+++.+..+........+.....
T Consensus 81 ~v~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d2bbkh_ 81 EVFDPVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPD 159 (355)
T ss_dssp EEECTTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETT
T ss_pred EEEECCC-CCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCC
T ss_conf 9999999-979889805886403117987349993388715773279882045430578837667705874047306996
Q ss_pred EEEEEECCCEEEEEECCCCEEEEEEC------CCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECC-
Q ss_conf 89999769929999889970899950------799884899992899999999399-2999987889986137884039-
Q 002591 762 RYLAAAAENVVSILDAETQACRLSLQ------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN- 833 (903)
Q Consensus 762 ~ll~~s~dg~I~i~D~~t~~~~~~l~------~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~- 833 (903)
.+++.+.|+...++..........+. .+...+....+.+++..++.++.+ .+++|++..+.. ..+.....+
T Consensus 160 ~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~ 238 (355)
T d2bbkh_ 160 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALT 238 (355)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSC
T ss_pred CEEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCE-EEEECCCCCC
T ss_conf 369993899989998347873799962433300011061021538997388746998299996589907-9984457844
Q ss_pred ---------CCCEEEEEEECCCCEEEEEECC----------CEEEEEECCCCCEEEECCCCCCEEEEEEECCCC--EEEE
Q ss_conf ---------9953999991799989999879----------929999889990889815789778999936999--9999
Q 002591 834 ---------GNKFHSCVFHPTYPSLLVIGCY----------QSLELWNMSENKTMTLTAHEGLIAALAVSTETG--YVAS 892 (903)
Q Consensus 834 ---------~~~i~~i~~sp~g~~lit~s~d----------g~I~iwdl~~~~~~~~~~h~~~V~sl~~spdg~--~LaS 892 (903)
......+.+++++..+++...+ ..|.+||..+++.+....+...+.+++|+||++ ++++
T Consensus 239 ~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~ 318 (355)
T d2bbkh_ 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYAL 318 (355)
T ss_dssp HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEE
T ss_pred CCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEE
T ss_conf 12685433035108999807997678874068712651799759998678884989966899877999928999699999
Q ss_pred EECCCCEEECC
Q ss_conf 95698399909
Q 002591 893 ASHDKFVKLWK 903 (903)
Q Consensus 893 gs~DG~I~IWd 903 (903)
++.|+.|++||
T Consensus 319 ~~~d~~i~v~D 329 (355)
T d2bbkh_ 319 STGDKTLYIHD 329 (355)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCEEEEEE
T ss_conf 78999899999
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=2.2e-17 Score=123.63 Aligned_cols=259 Identities=8% Similarity=-0.017 Sum_probs=162.1
Q ss_pred CEEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCCEEEEECCCCCEEEEECCCCC-------CEEEEEEC
Q ss_conf 2036447414999869999948999999995----------899299997899923478415899-------76899999
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFS 674 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~i~fspdg~~Latgs----------~Dg~I~IWd~~t~~~~~~l~~h~~-------~V~~i~fs 674 (903)
+.+.+..+..+... .++|+|||+.|++++ .|+.|.+||..+++.+..+..+.. ....+.|+
T Consensus 55 ~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~S 132 (368)
T d1mdah_ 55 CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC 132 (368)
T ss_dssp TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC
T ss_pred CCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEEC
T ss_conf 98377888578777--5139899988999755676401035678699998999938306437854210246886405887
Q ss_pred CCCCEEEEEE-CCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE-----
Q ss_conf 9999899994-8993999948999952588426888658999638999099998089929999958990568863-----
Q 002591 675 PSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----- 748 (903)
Q Consensus 675 pdg~~Lasgs-~Dg~I~IWdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~----- 748 (903)
||+++|+++. .++.|.+||+.+ .+....+..+.... +.+.+...++..+.||.+.+|+...........
T Consensus 133 pDGk~l~va~~~~~~v~~~d~~~-~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~ 207 (368)
T d1mdah_ 133 ASSACLLFFLFGSSAAAGLSVPG-ASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT 207 (368)
T ss_dssp TTSSCEEEEECSSSCEEEEEETT-TEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC
T ss_pred CCCCEEEEEECCCCEEEEEECCC-CCEEEEEECCCCCE----ECCCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCC
T ss_conf 89989999968998599998998-93867860467523----74699823999948998899982689626665303111
Q ss_pred ----CCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEC--CC----------CCCEEEEEECCCCCEEEEEEC--
Q ss_conf ----581069991499989999769929999889970899950--79----------988489999289999999939--
Q 002591 749 ----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GH----------TKPIDSVCWDPSGELLASVSE-- 810 (903)
Q Consensus 749 ----~~~~~i~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~--~h----------~~~V~si~~spdg~~lasgs~-- 810 (903)
.......+.+++. +.....+.+++++........... .+ ......+++++++..++....
T Consensus 208 ~~~~~~~~~~~~~~~g~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~ 285 (368)
T d1mdah_ 208 GAQNCSSQAAQANYPGM--LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH 285 (368)
T ss_dssp TTSCBCSCCEEETTTTE--EEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred CCCCCCEEECCCCCCCE--EEEECCCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCC
T ss_conf 35666466010155868--9993489779996069936997602465430455401278835688717998799983589
Q ss_pred -------C-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCE-EE-EEECCCEEEEEECCCCCEEEECCCCCCEEE
Q ss_conf -------9-2999987889986137884039995399999179998-99-998799299998899908898157897789
Q 002591 811 -------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS-LL-VIGCYQSLELWNMSENKTMTLTAHEGLIAA 880 (903)
Q Consensus 811 -------d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~-li-t~s~dg~I~iwdl~~~~~~~~~~h~~~V~s 880 (903)
. .|.+||..++ +.+..+.. ...+..++|+|+++. ++ +...++.|++||..+++.+....-......
T Consensus 286 ~~~~~~~~~~v~v~D~~t~---~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~ 361 (368)
T d1mdah_ 286 SRSCLAAAENTSSVTASVG---QTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPES 361 (368)
T ss_dssp SSCTTSCEEEEEEEESSSC---CEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCE
T ss_pred CCEEECCCCEEEEEECCCC---CEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCE
T ss_conf 7334058864999989999---48689558-9965179999899989999948999699998999979999879999878
Q ss_pred EEE
Q ss_conf 999
Q 002591 881 LAV 883 (903)
Q Consensus 881 l~~ 883 (903)
|.+
T Consensus 362 l~~ 364 (368)
T d1mdah_ 362 LSV 364 (368)
T ss_dssp EEC
T ss_pred EEE
T ss_conf 997
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.77 E-value=1.1e-15 Score=112.82 Aligned_cols=266 Identities=14% Similarity=0.036 Sum_probs=151.3
Q ss_pred EECCCCCEEEEEECCCCCEEEEEEC---------CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCE
Q ss_conf 4149998699999489999999958---------9929999789992347841589976899999999989999489939
Q 002591 619 VRASTSKVICCHFSSDGKLLATGGH---------DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 689 (903)
Q Consensus 619 l~~H~~~V~~i~fspdg~~Latgs~---------Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I 689 (903)
+..|...|.++.|||||++|+.++. ++.+.|||+.+++ ...+..+...+..+.|+|||+.||... ++.+
T Consensus 57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l 134 (470)
T d2bgra1 57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDI 134 (470)
T ss_dssp TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEE
T ss_pred HHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEEE-CCCC
T ss_conf 44316765405998988979999777100010467349999898885-131246874231010146764135751-4641
Q ss_pred EEEECCCCCCEEEEECC------------------CCCCEEEEEECCCCCEEEEEEECCCCEEEEECC------------
Q ss_conf 99948999952588426------------------888658999638999099998089929999958------------
Q 002591 690 RVWDADNPGYSLRTFMG------------------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN------------ 739 (903)
Q Consensus 690 ~IWdl~~~~~~~~~~~~------------------h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~------------ 739 (903)
++|+..+ +...+.... ..+....+.|+|++..+++....+..|..|.+.
T Consensus 135 ~~~~~~~-g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~ 213 (470)
T d2bgra1 135 YVKIEPN-LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKT 213 (470)
T ss_dssp EEESSTT-SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred EEEECCC-CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCEE
T ss_conf 3798899-946532101477740535432011210047765307999987220268637767069987660477788713
Q ss_pred -----------------------CCEEEEEEE--------------CCCEEEEEECCCCEEEEEEC-C-C----EEEEEE
Q ss_conf -----------------------990568863--------------58106999149998999976-9-9----299998
Q 002591 740 -----------------------NGSCTRVFK--------------GGTAQMRFQPHLGRYLAAAA-E-N----VVSILD 776 (903)
Q Consensus 740 -----------------------~~~~~~~~~--------------~~~~~i~~sp~~~~ll~~s~-d-g----~I~i~D 776 (903)
.+....... ..+..+.|.+++..++.... . + .+..+|
T Consensus 214 ~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d 293 (470)
T d2bgra1 214 VRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 293 (470)
T ss_dssp EEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred EEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEC
T ss_conf 54036654546886257999988861455203322478633478986677888768783347873046881599999961
Q ss_pred CCCCEEEEEECC------CCCCE-----EEEEECCCCC--EEEEEECC---EEEEEECCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 899708999507------99884-----8999928999--99999399---29999878899861378840399953999
Q 002591 777 AETQACRLSLQG------HTKPI-----DSVCWDPSGE--LLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHSC 840 (903)
Q Consensus 777 ~~t~~~~~~l~~------h~~~V-----~si~~spdg~--~lasgs~d---~I~iwdl~s~~~~~~i~~~~~~~~~i~~i 840 (903)
..++........ ....+ ....|.+++. +++....+ .|++|+...+ ....+......+..+
T Consensus 294 ~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~----~~~~lt~g~~~v~~~ 369 (470)
T d2bgra1 294 ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK----DCTFITKGTWEVIGI 369 (470)
T ss_dssp TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS----CCEESCCSSSCEEEE
T ss_pred CCCCCEEEEEEEEEEEEECCCEEECCCCCCCEEEECCCCCEEEEECCCCCCEEEEEECCCC----CEEEECCCCEEEEEE
T ss_conf 8889478999875146621433531357772454237884798743675764599952687----304511698048787
Q ss_pred EEECCCCEEEE-EECCC------EEEEEECCCCCEEE-----ECCCCCCEEEEEEECCCCEEEE
Q ss_conf 99179998999-98799------29999889990889-----8157897789999369999999
Q 002591 841 VFHPTYPSLLV-IGCYQ------SLELWNMSENKTMT-----LTAHEGLIAALAVSTETGYVAS 892 (903)
Q Consensus 841 ~~sp~g~~lit-~s~dg------~I~iwdl~~~~~~~-----~~~h~~~V~sl~~spdg~~LaS 892 (903)
++.+++.++. +..++ .|+-.++..+.... +..|...+..++|+||+++++.
T Consensus 370 -~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~ 432 (470)
T d2bgra1 370 -EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQL 432 (470)
T ss_dssp -EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEE
T ss_pred -EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEE
T ss_conf -897799999999568998351799999888998605703543588898799999989999999
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.72 E-value=1.3e-15 Score=112.22 Aligned_cols=323 Identities=9% Similarity=0.002 Sum_probs=198.5
Q ss_pred CCCCEEEECCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCC
Q ss_conf 69981441776026551000002688777567864159999767877441013574203644741499986999994899
Q 002591 556 SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG 635 (903)
Q Consensus 556 ~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~~l~~H~~~V~~i~fspdg 635 (903)
++.+.+|++.++...+.+..|..++... | ...+...+++.. .........|...+.+..+++||
T Consensus 20 sG~V~V~dlpS~r~l~~IpVfspd~~~g-----~------g~~~es~~vl~~-----~~~~~~gd~hhP~~s~t~gtpDG 83 (441)
T d1qnia2 20 QGEVRVLGVPSMRELMRIPVFNVDSATG-----W------GITNESKEILGG-----DQQYLNGDCHHPHISMTDGRYDG 83 (441)
T ss_dssp TCCEEEEEETTTEEEEEECSSSBCTTTC-----T------TTSHHHHHHHCS-----SSCCSCCCBCCCEEEEETTEEEE
T ss_pred CCCEEEEECCCCCEEEEEEEECCCCCEE-----E------EECCCCCEEEEC-----CCCCCCCCCCCCCCCEECCCCCC
T ss_conf 7748999678980799997675789879-----9------988865047831-----33225675567772210326888
Q ss_pred CEEEEEE-CCCCEEEEECCCCCEEEEEC-CCCCCEEEEEECCCCCE--EEEEECCC-----------------CEEEEEC
Q ss_conf 9999995-89929999789992347841-58997689999999998--99994899-----------------3999948
Q 002591 636 KLLATGG-HDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPR--LATSSFDK-----------------TVRVWDA 694 (903)
Q Consensus 636 ~~Latgs-~Dg~I~IWd~~t~~~~~~l~-~h~~~V~~i~fspdg~~--Lasgs~Dg-----------------~I~IWdl 694 (903)
++|++.. .+..|.++|+++++....+. .+...+..++|+++++. ++..+.+. .+..+|.
T Consensus 84 r~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~ 163 (441)
T d1qnia2 84 KYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA 163 (441)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 88999738999799998877847557956788786434870569989999566775443676630014555323886637
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE--CCCEEEEEECCCCEEEEEECCCEE
Q ss_conf 999952588426888658999638999099998089929999958990568863--581069991499989999769929
Q 002591 695 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVV 772 (903)
Q Consensus 695 ~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~--~~~~~i~~sp~~~~ll~~s~dg~I 772 (903)
.+ ......+.. ......+.|+|+++++++++.....+..++..+......+. .....+.+.++++++ ..+.++.+
T Consensus 164 ~t-~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~-~v~~~~v~ 240 (441)
T d1qnia2 164 ET-MDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK-TIGDSKVP 240 (441)
T ss_dssp TT-CSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCB-CCTTCCCC
T ss_pred CC-CEEEEEEEC-CCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCEE-EECCCCCE
T ss_conf 55-606478736-9986546987999989998517873189851571217899968851107996699999-96999828
Q ss_pred EEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE-CC-EEEEEECCCCC--------CCCEEEEEECCCCCEEEEEE
Q ss_conf 9998899708999507998848999928999999993-99-29999878899--------86137884039995399999
Q 002591 773 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGS--------EGECVHELSCNGNKFHSCVF 842 (903)
Q Consensus 773 ~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs-~d-~I~iwdl~s~~--------~~~~i~~~~~~~~~i~~i~~ 842 (903)
.+++......+..+..... ...+.++|||+++++++ .+ +|.+||+.+.. ...++.......-......|
T Consensus 241 vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~f 319 (441)
T d1qnia2 241 VVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTF 319 (441)
T ss_dssp EEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEE
T ss_pred EEECCCCCCEEEEEECCCC-CCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEE
T ss_conf 9980368706899717988-667268999878999077599389998322445752568842479960145547665226
Q ss_pred ECCCCEEEEEECCCEEEEEECCC----------CCEE-EE-----CCCCCCEEEEEEECCCCEEEEE---ECCCC
Q ss_conf 17999899998799299998899----------9088-98-----1578977899993699999999---56983
Q 002591 843 HPTYPSLLVIGCYQSLELWNMSE----------NKTM-TL-----TAHEGLIAALAVSTETGYVASA---SHDKF 898 (903)
Q Consensus 843 sp~g~~lit~s~dg~I~iwdl~~----------~~~~-~~-----~~h~~~V~sl~~spdg~~LaSg---s~DG~ 898 (903)
.+++..+.+...|..|..|++.. ...+ .+ .+|...+.+.+++|||+||+++ +.|..
T Consensus 320 d~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~ 394 (441)
T d1qnia2 320 DGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRF 394 (441)
T ss_dssp CSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGS
T ss_pred CCCCEEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 578559985244316897235422133226777656864532668987752454223898848996574442557
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.72 E-value=4.5e-15 Score=108.74 Aligned_cols=277 Identities=9% Similarity=-0.022 Sum_probs=153.5
Q ss_pred CCCCEEEEEECCCCCEEEE---EECCC--CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------CC
Q ss_conf 9998699999489999999---95899--299997899923478415899768999999999899994----------89
Q 002591 622 STSKVICCHFSSDGKLLAT---GGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FD 686 (903)
Q Consensus 622 H~~~V~~i~fspdg~~Lat---gs~Dg--~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs----------~D 686 (903)
+.+....++..++++.... ...++ .|.+||..+++.+.++..+... .+.|+||++.|++.+ .|
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCC
T ss_conf 679866645589876126972045788621799708998377888578777--513989998899975567640103567
Q ss_pred CCEEEEECCCCCCEEEEECCCCC-------CEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECC
Q ss_conf 93999948999952588426888-------65899963899909999808992999995899056886358106999149
Q 002591 687 KTVRVWDADNPGYSLRTFMGHSA-------SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPH 759 (903)
Q Consensus 687 g~I~IWdl~~~~~~~~~~~~h~~-------~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~~~~~i~~sp~ 759 (903)
+.|.+||..+ .+.+..+..+.. ....+.|+|++++++++...++.+.+||+.+++....+..+.....+...
T Consensus 96 ~~v~v~D~~t-~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 174 (368)
T d1mdah_ 96 DYVEVFDPVT-FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGA 174 (368)
T ss_dssp EEEEEECTTT-CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEE
T ss_pred CEEEEEECCC-CCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCCC
T ss_conf 8699998999-938306437854210246886405887899899999689985999989989386786046752374699
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEE------CCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCCCCCEEEEEECC
Q ss_conf 998999976992999988997089995------07998848999928999999993992999987889986137884039
Q 002591 760 LGRYLAAAAENVVSILDAETQACRLSL------QGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCN 833 (903)
Q Consensus 760 ~~~ll~~s~dg~I~i~D~~t~~~~~~l------~~h~~~V~si~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~ 833 (903)
...+++.+.|+.+.+++.......... ..+...+..+.+.+++.++.+... .++++++..... ..+......
T Consensus 175 ~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~v~~~~~~~~~~-~~~~~~~~~ 252 (368)
T d1mdah_ 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVAS-SILQGDIPAAGA-TMKAAIDGN 252 (368)
T ss_dssp TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSS-CCEEEECCSSCC-EEECCCCSS
T ss_pred CCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEEEEECCC-CEEEEEECCCCE-EEEEECCCC
T ss_conf 823999948998899982689626665303111356664660101558689993489-779996069936-997602465
Q ss_pred ----------CCCEEEEEEECCCCEEEEEECC---------CEEEEEECCCCCEEEECCCCCCEEEEEEECCCC--EEEE
Q ss_conf ----------9953999991799989999879---------929999889990889815789778999936999--9999
Q 002591 834 ----------GNKFHSCVFHPTYPSLLVIGCY---------QSLELWNMSENKTMTLTAHEGLIAALAVSTETG--YVAS 892 (903)
Q Consensus 834 ----------~~~i~~i~~sp~g~~lit~s~d---------g~I~iwdl~~~~~~~~~~h~~~V~sl~~spdg~--~LaS 892 (903)
......+++++++..+++...+ ..|.+||..+++.+....+...+.+++|+||++ ++++
T Consensus 253 ~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s 332 (368)
T d1mdah_ 253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEE
T ss_pred CCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEE
T ss_conf 43045540127883568871799879998358973340588649999899994868955899651799998999899999
Q ss_pred EECCCCEEECC
Q ss_conf 95698399909
Q 002591 893 ASHDKFVKLWK 903 (903)
Q Consensus 893 gs~DG~I~IWd 903 (903)
+..|+.|++||
T Consensus 333 ~~~~~~v~v~D 343 (368)
T d1mdah_ 333 SAGTEVLDIYD 343 (368)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCEEEEEE
T ss_conf 48999699998
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.61 E-value=3.8e-13 Score=96.31 Aligned_cols=320 Identities=11% Similarity=0.062 Sum_probs=166.1
Q ss_pred EEEEEECCCCEEC-CCCCEEEECCCCHHHHHHCCCCCCCCCCCCEEEE-EECCCCCCCC-------------CCCCCCCC
Q ss_conf 0899808981102-6998144177602655100000268877756786-4159999767-------------87744101
Q 002591 543 LMMFGTDGAGTLT-SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDTDPRD-------------AGGRGMDV 607 (903)
Q Consensus 543 ~i~~s~dg~~~~~-~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~-~~~d~~~~~~-------------~~~~~~d~ 607 (903)
.+.|.+|+.+... ++.+.+||..+++....++...-. .....+..+ +++|..-... ....+|++
T Consensus 21 ~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~ 99 (470)
T d2bgra1 21 SLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFD-EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (470)
T ss_dssp CCEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTT-TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CCEECCCCEEEEECCCCEEEEECCCCCEEEEECHHHHH-HCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEEC
T ss_conf 78968999799975994999988999789997015644-31676540599898897999977710001046734999989
Q ss_pred CCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECC------------------CCCCEE
Q ss_conf 35742036447414999869999948999999995899299997899923478415------------------899768
Q 002591 608 SQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE------------------HSSLIT 669 (903)
Q Consensus 608 ~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~------------------h~~~V~ 669 (903)
.. .....+..|.+.+..+.|||||++||... ++.+++|+..++........ ......
T Consensus 100 ~~----~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~ 174 (470)
T d2bgra1 100 NK----RQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (470)
T ss_dssp TT----TEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred CC----CCCCCCCCCCCCCCCCCCCCCCCEEEEEE-CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCC
T ss_conf 88----85131246874231010146764135751-46413798899946532101477740535432011210047765
Q ss_pred EEEECCCCCEEEEEECCCC-EEEEECC---CCC---CE-----------------EEEE---------------------
Q ss_conf 9999999998999948993-9999489---999---52-----------------5884---------------------
Q 002591 670 DVRFSPSMPRLATSSFDKT-VRVWDAD---NPG---YS-----------------LRTF--------------------- 704 (903)
Q Consensus 670 ~i~fspdg~~Lasgs~Dg~-I~IWdl~---~~~---~~-----------------~~~~--------------------- 704 (903)
.+.|+|||++|++...|.+ |..|.+. ... .. +..+
T Consensus 175 ~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 254 (470)
T d2bgra1 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS 254 (470)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHH
T ss_pred CCEECCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCC
T ss_conf 30799998722026863776706998766047778871354036654546886257999988861455203322478633
Q ss_pred -CCCCCCEEEEEECCCCCEEEEEEECCC-----CEEEEECCCCEEEEEEEC--------------CCEEEEEECCCCE--
Q ss_conf -268886589996389990999980899-----299999589905688635--------------8106999149998--
Q 002591 705 -MGHSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNGSCTRVFKG--------------GTAQMRFQPHLGR-- 762 (903)
Q Consensus 705 -~~h~~~V~si~fsp~~~~ll~sgs~Dg-----~I~iwDi~~~~~~~~~~~--------------~~~~i~~sp~~~~-- 762 (903)
......+..+.|.+++..++......+ .++.+|..++........ ......+.++++.
T Consensus 255 ~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 334 (470)
T d2bgra1 255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFY 334 (470)
T ss_dssp HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred CCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEECCCCCCCEEEECCCCCE
T ss_conf 47898667788876878334787304688159999996188894789998751466214335313577724542378847
Q ss_pred EEEEECCCE--EEEEECCCCEEEEEECCCCCCEEEEEECCCCCE-EEEEECC--E-----EEEEECCCCCCCCEEE-EEE
Q ss_conf 999976992--999988997089995079988489999289999-9999399--2-----9999878899861378-840
Q 002591 763 YLAAAAENV--VSILDAETQACRLSLQGHTKPIDSVCWDPSGEL-LASVSED--S-----VRVWTVGSGSEGECVH-ELS 831 (903)
Q Consensus 763 ll~~s~dg~--I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~-lasgs~d--~-----I~iwdl~s~~~~~~i~-~~~ 831 (903)
++....++. |++|+........ +..+...|..+ +..+++. ++++..+ . |+..++..+....++. .+.
T Consensus 335 ~~~s~~dg~~~ly~~~~~g~~~~~-lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~ 412 (470)
T d2bgra1 335 KIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELN 412 (470)
T ss_dssp EEEECTTSCEEEEEEETTCSCCEE-SCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTS
T ss_pred EEEECCCCCCEEEEEECCCCCEEE-ECCCCEEEEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECCCCC
T ss_conf 987436757645999526873045-11698048787-8977999999995689983517999998889986057035435
Q ss_pred CCCCCEEEEEEECCCCEEEEEECC---CEEEEEECCCCCEEE
Q ss_conf 399953999991799989999879---929999889990889
Q 002591 832 CNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMT 870 (903)
Q Consensus 832 ~~~~~i~~i~~sp~g~~lit~s~d---g~I~iwdl~~~~~~~ 870 (903)
.+...+..++|+|++++++..... -.+.+|+..+++.+.
T Consensus 413 ~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~ 454 (470)
T d2bgra1 413 PERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLR 454 (470)
T ss_dssp TTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEE
T ss_conf 888987999999899999998328999819999989998999
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.56 E-value=9.8e-11 Score=80.81 Aligned_cols=246 Identities=8% Similarity=-0.013 Sum_probs=141.7
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE--CCCCCCEEEEEECCCCCEEEE--EEC-CCCEEEEECCC
Q ss_conf 9998699999489999999958992999978999234784--158997689999999998999--948-99399994899
Q 002591 622 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EEHSSLITDVRFSPSMPRLAT--SSF-DKTVRVWDADN 696 (903)
Q Consensus 622 H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l--~~h~~~V~~i~fspdg~~Las--gs~-Dg~I~IWdl~~ 696 (903)
....+..++|++++++|+++.. +.+..|.+.....+... .........+.++++++.++. +.. .+.|..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEECCCCCEEEEEEC-CCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCC
T ss_conf 8999777999489899999938-947899990899769876412899867899878998799999327997899867457
Q ss_pred CCCEEEE----------------ECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCE-EE--EEEE-----CCCE
Q ss_conf 9952588----------------426888658999638999099998089929999958990-56--8863-----5810
Q 002591 697 PGYSLRT----------------FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CT--RVFK-----GGTA 752 (903)
Q Consensus 697 ~~~~~~~----------------~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~-~~--~~~~-----~~~~ 752 (903)
.+..... .......+.++.|+|++++++++......|.+|++.... .. .... .+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr 196 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCCCCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEE
T ss_conf 88742068664033004764675568898115978889999899820799879999706887166525111127887408
Q ss_pred EEEEECCCCEEEEEEC-CCEEEEEECCCCEE--EEEEC-----------------CCCCCEEEEEECCCCCEEEEEEC--
Q ss_conf 6999149998999976-99299998899708--99950-----------------79988489999289999999939--
Q 002591 753 QMRFQPHLGRYLAAAA-ENVVSILDAETQAC--RLSLQ-----------------GHTKPIDSVCWDPSGELLASVSE-- 810 (903)
Q Consensus 753 ~i~~sp~~~~ll~~s~-dg~I~i~D~~t~~~--~~~l~-----------------~h~~~V~si~~spdg~~lasgs~-- 810 (903)
.+.|+|++..+++... ++.|.+|+...... +.... ........+.++|+|++|+++..
T Consensus 197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~ 276 (365)
T d1jofa_ 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCC
T ss_conf 99988998669995158998999995598753778731240245565566654444357763169989999789971357
Q ss_pred C-----EEEEEECCCCCCCC---EEEEEECCCCCEEEEEEEC-CCCEEEEEEC-CCEEEEEECCCCCE
Q ss_conf 9-----29999878899861---3788403999539999917-9998999987-99299998899908
Q 002591 811 D-----SVRVWTVGSGSEGE---CVHELSCNGNKFHSCVFHP-TYPSLLVIGC-YQSLELWNMSENKT 868 (903)
Q Consensus 811 d-----~I~iwdl~s~~~~~---~i~~~~~~~~~i~~i~~sp-~g~~lit~s~-dg~I~iwdl~~~~~ 868 (903)
+ .|..|++....... .+............++++| +|++|+++.. ++.|.+|+++....
T Consensus 277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l 344 (365)
T d1jofa_ 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred CCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCCEEEEEECCCCEEEEEEEECCCC
T ss_conf 87542279999856887144676766777679986478964899999999967999499999828867
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=1.1e-10 Score=80.41 Aligned_cols=232 Identities=13% Similarity=0.152 Sum_probs=118.2
Q ss_pred CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC---CEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCE
Q ss_conf 299997899923478415899768999999999899994899---39999489999525884268886589996389990
Q 002591 646 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 722 (903)
Q Consensus 646 ~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg---~I~IWdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ 722 (903)
.|+|.|.+ +.....+..+...+...+|+|||+.||...... .+.+.+... .....+..+...+....|+|++..
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--GAVRQVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--CCEEEEECCSSCEEEEEECTTSSE
T ss_pred EEEEECCC-CCCCEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCC--CCEEEEEEEECCCCCCEECCCCCE
T ss_conf 99999289-997679865898426038878999899998152675134431136--750677642024543024488986
Q ss_pred EEEEEECCCCEEEEECC--CCEEEEEEEC--CCEEEEEECCCCEEEEEEC-CC--EEEEEECCCCEEEEEECCCCCCEEE
Q ss_conf 99998089929999958--9905688635--8106999149998999976-99--2999988997089995079988489
Q 002591 723 LICSCDGDGEIRYWSIN--NGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHTKPIDS 795 (903)
Q Consensus 723 ll~sgs~Dg~I~iwDi~--~~~~~~~~~~--~~~~i~~sp~~~~ll~~s~-dg--~I~i~D~~t~~~~~~l~~h~~~V~s 795 (903)
+++....++...++... .......... ......+.+....++.... ++ .|.+++........ +.........
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~~ 175 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQD 175 (269)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEE
T ss_pred EEEEEECCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCEE-EECCCCCCCC
T ss_conf 467640278641000022212200001014421145434554433000012687438654213310001-0001222234
Q ss_pred EEECCCCCEEEEEECC----EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECC---CEEEEEECCCCCE
Q ss_conf 9992899999999399----29999878899861378840399953999991799989999879---9299998899908
Q 002591 796 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKT 868 (903)
Q Consensus 796 i~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s~d---g~I~iwdl~~~~~ 868 (903)
..|+|++..++..+.+ .+.+++...+ . . .............|+|+|+.|+..+.. ..|+++++..+..
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~---~-~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATG---G-V-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTC---C-E-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEEECCCC---C-C-EEEECCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCE
T ss_conf 322345430577860588012567603564---4-0-5850686544558989999999998179984799999999977
Q ss_pred EEECCCCCCEEEEEEECC
Q ss_conf 898157897789999369
Q 002591 869 MTLTAHEGLIAALAVSTE 886 (903)
Q Consensus 869 ~~~~~h~~~V~sl~~spd 886 (903)
..+....+.+...+|+|-
T Consensus 251 ~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 251 ARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp EECCCSSSEEEEEEECCC
T ss_pred EEEECCCCCEEEEEECCC
T ss_conf 998579985883782898
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.53 E-value=9e-13 Score=93.92 Aligned_cols=253 Identities=8% Similarity=-0.014 Sum_probs=152.2
Q ss_pred CEEEEEEEE-CCCCCEEEEEECCCCC--EEEEEECCC-----------------CEEEEECCCCCEEEEECCCCCCEEEE
Q ss_conf 203644741-4999869999948999--999995899-----------------29999789992347841589976899
Q 002591 612 SFKEANSVR-ASTSKVICCHFSSDGK--LLATGGHDK-----------------KAVLWHTDTLKSKTNLEEHSSLITDV 671 (903)
Q Consensus 612 ~~~~~~~l~-~H~~~V~~i~fspdg~--~Latgs~Dg-----------------~I~IWd~~t~~~~~~l~~h~~~V~~i 671 (903)
++++...++ .+...+..++|+++++ +++..+.+. .+..+|..+.+....+.... ....+
T Consensus 103 t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~-~p~~v 181 (441)
T d1qnia2 103 IMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDG-NLDNT 181 (441)
T ss_dssp TTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESS-CCCCE
T ss_pred CCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCC-CCCCE
T ss_conf 78475579567887864348705699899995667754436766300145553238866375560647873699-86546
Q ss_pred EECCCCCEEEEEECCC-CEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC
Q ss_conf 9999999899994899-399994899995258842688865899963899909999808992999995899056886358
Q 002591 672 RFSPSMPRLATSSFDK-TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 750 (903)
Q Consensus 672 ~fspdg~~Lasgs~Dg-~I~IWdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~~ 750 (903)
.|+|+++++++++.+. .+..++..+ ......+... ..-..+.+.++++... .+.++.+.+++....+.++.+..+
T Consensus 182 ~~spdGk~a~vt~~nse~~~~id~~t-~~~~d~i~v~-n~p~~~~~~~dGk~~~--v~~~~v~vvd~~~~~~v~~~IPvg 257 (441)
T d1qnia2 182 DADYTGKYATSTCYNSERAVDLAGTM-RNDRDWVVVF-NVERIAAAVKAGNFKT--IGDSKVPVVDGRGESEFTRYIPVP 257 (441)
T ss_dssp EECSSSSEEEEEESCTTCCSSHHHHT-CSSBCEEEEE-EHHHHHHHHHTTCCBC--CTTCCCCEEECSSSCSSEEEECCB
T ss_pred EECCCCCEEEEEECCCCCEEEEECCC-CCEEEEEEEC-CCCCEEEEECCCCEEE--ECCCCCEEEECCCCCCEEEEEECC
T ss_conf 98799998999851787318985157-1217899968-8511079966999999--699982899803687068997179
Q ss_pred --CEEEEEECCCCEEEEEEC-CCEEEEEECCCCE-----------EEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEE
Q ss_conf --106999149998999976-9929999889970-----------899950799884899992899999999399-2999
Q 002591 751 --TAQMRFQPHLGRYLAAAA-ENVVSILDAETQA-----------CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV 815 (903)
Q Consensus 751 --~~~i~~sp~~~~ll~~s~-dg~I~i~D~~t~~-----------~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~i 815 (903)
...+.++|+++++++++. +++|.+||+++.. ++.-.....-......|+++|..+.+...| .|..
T Consensus 258 ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~k 337 (441)
T d1qnia2 258 KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCK 337 (441)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CCCCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECCCCEEEECCCCCCEEEE
T ss_conf 88667268999878999077599389998322445752568842479960145547665226578559985244316897
Q ss_pred EECCC------CC-CCCEEEEEE-----CCCCCEEEEEEECCCCEEEEEEC---CC----------EEEEEECCCCCEE
Q ss_conf 98788------99-861378840-----39995399999179998999987---99----------2999988999088
Q 002591 816 WTVGS------GS-EGECVHELS-----CNGNKFHSCVFHPTYPSLLVIGC---YQ----------SLELWNMSENKTM 869 (903)
Q Consensus 816 wdl~s------~~-~~~~i~~~~-----~~~~~i~~i~~sp~g~~lit~s~---dg----------~I~iwdl~~~~~~ 869 (903)
|++.. +. ....+..+. +|...+.+..++|+|++|++++. |+ .-.++|+...+..
T Consensus 338 w~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~~~ 416 (441)
T d1qnia2 338 WNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEEMK 416 (441)
T ss_dssp EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSSCE
T ss_pred ECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCEEE
T ss_conf 2354221332267776568645326689877524542238988489965744425576788898764426981597579
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.52 E-value=1.4e-10 Score=79.84 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=29.3
Q ss_pred CEEEEEECCCCEEEEEEC-CCEEEEEECCCC-EEE--EEEC--CCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCC
Q ss_conf 106999149998999976-992999988997-089--9950--799884899992899999999399--2999987889
Q 002591 751 TAQMRFQPHLGRYLAAAA-ENVVSILDAETQ-ACR--LSLQ--GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 821 (903)
Q Consensus 751 ~~~i~~sp~~~~ll~~s~-dg~I~i~D~~t~-~~~--~~l~--~h~~~V~si~~spdg~~lasgs~d--~I~iwdl~s~ 821 (903)
...+.|+|++++++++.. .+.|.+|+.... ... ..+. ........++|+|+++++++..+. .|.+|++...
T Consensus 147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCC
T ss_conf 1597888999989982079987999970688716652511112788740899988998669995158998999995598
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.48 E-value=3.9e-10 Score=76.97 Aligned_cols=128 Identities=13% Similarity=0.072 Sum_probs=90.0
Q ss_pred EEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 03644741499986999994899999999589929999789992347841589976899999999989999489939999
Q 002591 613 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 692 (903)
Q Consensus 613 ~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IW 692 (903)
.+.+..+.... .+..+++++||+++++...+++|+.|+... + ...+......+.+++|.++++++++...++.+.+|
T Consensus 18 ~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~ 94 (302)
T d2p4oa1 18 AKIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV 94 (302)
T ss_dssp EEEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCEEEECCCCC-CCCCEEECCCCCEEEEECCCCEEEEEECCC-C-EEEEECCCCCCCEEEECCCCCEEEEECCCCEEEEE
T ss_conf 20788888998-847877999988999968899899990899-8-89997179985368986778869983289537888
Q ss_pred ECCCCCCEEEEE--CCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEE
Q ss_conf 489999525884--2688865899963899909999808992999995899056
Q 002591 693 DADNPGYSLRTF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 744 (903)
Q Consensus 693 dl~~~~~~~~~~--~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~ 744 (903)
+..........+ .........+.+.+++. ++++.+.++.+..++...+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~ 147 (302)
T d2p4oa1 95 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGS 147 (302)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEE
T ss_pred EECCCCCCEEECCCCCCCCCCCEEEECCCCC-EEEECCCCCCCEEEECCCCCCE
T ss_conf 7101111012102357863221667715797-8750356554102421687303
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=7.5e-09 Score=68.66 Aligned_cols=220 Identities=14% Similarity=0.155 Sum_probs=140.5
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCC---CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEEC
Q ss_conf 414999869999948999999995899---2999978999234784158997689999999998999948-993999948
Q 002591 619 VRASTSKVICCHFSSDGKLLATGGHDK---KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDA 694 (903)
Q Consensus 619 l~~H~~~V~~i~fspdg~~Latgs~Dg---~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~-Dg~I~IWdl 694 (903)
+..+...+...+|||||+.||....+. .+.+.+..... ...+..+...+....|+|++..++.... ++...++..
T Consensus 34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~ 112 (269)
T d2hqsa1 34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 112 (269)
T ss_dssp EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCC-EEEEEEEECCCCCCEECCCCCEEEEEEECCCCCCEEEC
T ss_conf 86589842603887899989999815267513443113675-06776420245430244889864676402786410000
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCC--EEEEECCCCEEEEEEE--CCCEEEEEECCCCEEEEEECCC
Q ss_conf 99995258842688865899963899909999808992--9999958990568863--5810699914999899997699
Q 002591 695 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAEN 770 (903)
Q Consensus 695 ~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~--I~iwDi~~~~~~~~~~--~~~~~i~~sp~~~~ll~~s~dg 770 (903)
.....................+.+++..++++...++. |.+.++.......... .......|++++..++....++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 192 (269)
T d2hqsa1 113 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG 192 (269)
T ss_dssp ETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECS
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 22212200001014421145434554433000012687438654213310001000122223432234543057786058
Q ss_pred ---EEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC---C-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf ---2999988997089995079988489999289999999939---9-29999878899861378840399953999991
Q 002591 771 ---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 843 (903)
Q Consensus 771 ---~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~---d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s 843 (903)
.+.+++...+... +...........|+|||+.|+..+. . .|+++++..+ . ...+......+...+|+
T Consensus 193 ~~~~i~~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~---~-~~~lt~~~g~~~~p~WS 266 (269)
T d2hqsa1 193 GQQHIAKQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR---F-KARLPATDGQVKFPAWS 266 (269)
T ss_dssp SCEEEEEEETTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC---C-EEECCCSSSEEEEEEEC
T ss_pred CCEEEEEEECCCCCCE--EEECCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCC---C-EEEEECCCCCEEEEEEC
T ss_conf 8012567603564405--8506865445589899999999981799847999999999---7-79985799858837828
Q ss_pred CC
Q ss_conf 79
Q 002591 844 PT 845 (903)
Q Consensus 844 p~ 845 (903)
|-
T Consensus 267 P~ 268 (269)
T d2hqsa1 267 PY 268 (269)
T ss_dssp CC
T ss_pred CC
T ss_conf 98
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.38 E-value=1.6e-09 Score=72.95 Aligned_cols=234 Identities=11% Similarity=0.011 Sum_probs=124.5
Q ss_pred CCEEEEEECCCCCEEEEE-ECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEE
Q ss_conf 986999994899999999-5899299997899923478415899768999999999899994899399994899995258
Q 002591 624 SKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 702 (903)
Q Consensus 624 ~~V~~i~fspdg~~Latg-s~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWdl~~~~~~~~ 702 (903)
-.-.++++.++|.++++. +..+.|..++...................+++.+++.++++....+.+++++..+ ...+.
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~-~~~~~ 92 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSN-NQTVL 92 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCS-CCEEC
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECEEEEEEECC-CEEEE
T ss_conf 98788999699999999718998899993899668974369866840899938998898631000035542112-00000
Q ss_pred EECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE---ECCCEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 842688865899963899909999808992999995899056886---35810699914999899997699299998899
Q 002591 703 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAET 779 (903)
Q Consensus 703 ~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~---~~~~~~i~~sp~~~~ll~~s~dg~I~i~D~~t 779 (903)
... ......++++.+++. ++++-..+..+..++.......... ......+.+.+++..+++...++.|..++...
T Consensus 93 ~~~-~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~ 170 (260)
T d1rwia_ 93 PFD-GLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 170 (260)
T ss_dssp CCC-SCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred EEE-EEEECCCCCCCCCCE-EEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCC
T ss_conf 010-000000002455320-575033555321123222201223203667752054548998864102564332223431
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEE
Q ss_conf 70899950799884899992899999999399-29999878899861378840399953999991799989999879929
Q 002591 780 QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 858 (903)
Q Consensus 780 ~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s~dg~I 858 (903)
..........-.....++++++++++++.... .|..++..... ..+ ...........+++++++..+++-..++.|
T Consensus 171 ~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~--~~~-~~~~~~~~P~~i~~d~~g~l~vad~~~~rI 247 (260)
T d1rwia_ 171 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT--STV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRV 247 (260)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC--CEE-CCCCSCCCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCE--EEE-ECCCCCCCEEEEEEECCCCEEEEECCCCEE
T ss_conf 00122210114787631231000134321489989999699976--999-706998981799990899999997999989
Q ss_pred EEEEC
Q ss_conf 99988
Q 002591 859 ELWNM 863 (903)
Q Consensus 859 ~iwdl 863 (903)
+.++.
T Consensus 248 ~~i~~ 252 (260)
T d1rwia_ 248 VKLTS 252 (260)
T ss_dssp EEECC
T ss_pred EEEEC
T ss_conf 99959
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=8.9e-09 Score=68.19 Aligned_cols=143 Identities=9% Similarity=0.096 Sum_probs=57.2
Q ss_pred EEEEEECCCCEEEEEEC-C---CEEEEEECCCCEEEEEECC-CCCCE----EEEEECCCCCEEE--EEE-C---CEEEEE
Q ss_conf 06999149998999976-9---9299998899708999507-99884----8999928999999--993-9---929999
Q 002591 752 AQMRFQPHLGRYLAAAA-E---NVVSILDAETQACRLSLQG-HTKPI----DSVCWDPSGELLA--SVS-E---DSVRVW 816 (903)
Q Consensus 752 ~~i~~sp~~~~ll~~s~-d---g~I~i~D~~t~~~~~~l~~-h~~~V----~si~~spdg~~la--sgs-~---d~I~iw 816 (903)
..+.|.+++..++.... + ..|.++|..++++...+.. ...+| ....|.++|..++ ..+ . +.++.+
T Consensus 258 ~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~ 337 (465)
T d1xfda1 258 TMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHI 337 (465)
T ss_dssp EEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEE
T ss_pred EEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEEEEEEEEEECCCCCEEEE
T ss_conf 56687579938999974100301379970799927877897278517356786057468980577776543166716899
Q ss_pred ECCCC---CCCCEEEEEECCCCCEEEE-EEECCCCEEEEEECC-----CEEEEEECCCCCEE---E-ECCCCCCEEEEEE
Q ss_conf 87889---9861378840399953999-991799989999879-----92999988999088---9-8157897789999
Q 002591 817 TVGSG---SEGECVHELSCNGNKFHSC-VFHPTYPSLLVIGCY-----QSLELWNMSENKTM---T-LTAHEGLIAALAV 883 (903)
Q Consensus 817 dl~s~---~~~~~i~~~~~~~~~i~~i-~~sp~g~~lit~s~d-----g~I~iwdl~~~~~~---~-~~~h~~~V~sl~~ 883 (903)
++... .....+..+....-.|..+ .|..+++.|+..+.. ..|+-.++...... + ..........+.|
T Consensus 338 ~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~ 417 (465)
T d1xfda1 338 TVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASF 417 (465)
T ss_dssp EEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEE
T ss_pred EECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCCCEEEEEE
T ss_conf 83156666788626982269921997789838999999999689998268999977899860553144678898799999
Q ss_pred ECCCCEEEEEE
Q ss_conf 36999999995
Q 002591 884 STETGYVASAS 894 (903)
Q Consensus 884 spdg~~LaSgs 894 (903)
+|++++++..+
T Consensus 418 S~~~~y~v~~~ 428 (465)
T d1xfda1 418 SHSMDFFLLKC 428 (465)
T ss_dssp CTTSSEEEEEC
T ss_pred CCCCCEEEEEE
T ss_conf 99999999980
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.37 E-value=5e-09 Score=69.81 Aligned_cols=178 Identities=7% Similarity=-0.016 Sum_probs=63.1
Q ss_pred EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECC
Q ss_conf 99999489999999958992999978999234784158997689999999998999948993999948999952588426
Q 002591 627 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 706 (903)
Q Consensus 627 ~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWdl~~~~~~~~~~~~ 706 (903)
..+++++++.++++....+.+++++..+...+.... ......++++.++++++++-..+..+.+++........... .
T Consensus 60 ~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~-~ 137 (260)
T d1rwia_ 60 QGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-T 137 (260)
T ss_dssp CCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC-C
T ss_pred EEEEECCCCCEEEEEEEECEEEEEEECCCEEEEEEE-EEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEE-C
T ss_conf 089993899889863100003554211200000010-00000000245532057503355532112322220122320-3
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE---CCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEE
Q ss_conf 888658999638999099998089929999958990568863---58106999149998999976992999988997089
Q 002591 707 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR 783 (903)
Q Consensus 707 h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~---~~~~~i~~sp~~~~ll~~s~dg~I~i~D~~t~~~~ 783 (903)
......++++.+++. ++++...++.|..++........... .....+++.+++..+++....+.|..++.......
T Consensus 138 ~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~ 216 (260)
T d1rwia_ 138 GLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST 216 (260)
T ss_dssp SCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE
T ss_pred CCCCCCEEEECCCCC-EEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEE
T ss_conf 667752054548998-8641025643322234310012221011478763123100013432148998999969997699
Q ss_pred EEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 995079988489999289999999
Q 002591 784 LSLQGHTKPIDSVCWDPSGELLAS 807 (903)
Q Consensus 784 ~~l~~h~~~V~si~~spdg~~las 807 (903)
......-.....|+++++++++++
T Consensus 217 ~~~~~~~~~P~~i~~d~~g~l~va 240 (260)
T d1rwia_ 217 VLPFTGLNTPLAVAVDSDRTVYVA 240 (260)
T ss_dssp ECCCCSCCCEEEEEECTTCCEEEE
T ss_pred EECCCCCCCEEEEEEECCCCEEEE
T ss_conf 970699898179999089999999
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.8e-08 Score=66.26 Aligned_cols=181 Identities=11% Similarity=0.148 Sum_probs=98.3
Q ss_pred EEEEECCCCCCEEEEE-----CCCCCCEEEEEECCCCCEEEEEEECC---CCEEEEECCCCEEEEEEECC--------CE
Q ss_conf 9999489999525884-----26888658999638999099998089---92999995899056886358--------10
Q 002591 689 VRVWDADNPGYSLRTF-----MGHSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGSCTRVFKGG--------TA 752 (903)
Q Consensus 689 I~IWdl~~~~~~~~~~-----~~h~~~V~si~fsp~~~~ll~sgs~D---g~I~iwDi~~~~~~~~~~~~--------~~ 752 (903)
+.++|+.......... ......+..+.|.+++..++.....+ ..|.++|..++++...+... ..
T Consensus 230 l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~ 309 (465)
T d1xfda1 230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNE 309 (465)
T ss_dssp EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCC
T ss_pred EEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCC
T ss_conf 79983689817899952576766663045668757993899997410030137997079992787789727851735678
Q ss_pred EEEEECCCCEEEE--EE-CC--CEEEEEECC------CCEEEEEECCCCCCEEEE-EECCCCCEEE-EEECC---E--EE
Q ss_conf 6999149998999--97-69--929999889------970899950799884899-9928999999-99399---2--99
Q 002591 753 QMRFQPHLGRYLA--AA-AE--NVVSILDAE------TQACRLSLQGHTKPIDSV-CWDPSGELLA-SVSED---S--VR 814 (903)
Q Consensus 753 ~i~~sp~~~~ll~--~s-~d--g~I~i~D~~------t~~~~~~l~~h~~~V~si-~~spdg~~la-sgs~d---~--I~ 814 (903)
...|.+++..++. .. .+ +.++.+++. .+..+..+....-.|..+ .|+.+++.|+ ++..+ . ++
T Consensus 310 ~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly 389 (465)
T d1xfda1 310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY 389 (465)
T ss_dssp CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred CEEECCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEE
T ss_conf 60574689805777765431667168998315666678862698226992199778983899999999968999826899
Q ss_pred EEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECC---CEEEEEECCCCCEE
Q ss_conf 99878899861378840399953999991799989999879---92999988999088
Q 002591 815 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTM 869 (903)
Q Consensus 815 iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s~d---g~I~iwdl~~~~~~ 869 (903)
-.++.......|+............+.|+|++.+++..+.. -.+.+++..+++.+
T Consensus 390 ~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~ 447 (465)
T d1xfda1 390 SANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKM 447 (465)
T ss_dssp EECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEE
T ss_pred EEECCCCCCCEEECCCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEE
T ss_conf 9977899860553144678898799999999999999800699984999999999799
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.26 E-value=4.1e-08 Score=63.89 Aligned_cols=236 Identities=12% Similarity=0.109 Sum_probs=113.2
Q ss_pred CCCCEEEEEECCCCCEEEEEEC-------CCCEEEEECCCCCEEEEECCC----CCCEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 9998699999489999999958-------992999978999234784158----99768999999999899994899399
Q 002591 622 STSKVICCHFSSDGKLLATGGH-------DKKAVLWHTDTLKSKTNLEEH----SSLITDVRFSPSMPRLATSSFDKTVR 690 (903)
Q Consensus 622 H~~~V~~i~fspdg~~Latgs~-------Dg~I~IWd~~t~~~~~~l~~h----~~~V~~i~fspdg~~Lasgs~Dg~I~ 690 (903)
.-.....++|.++|+++++... ++.|..||..++......... ...-..+.|.+++..++++.....|.
T Consensus 16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~ 95 (314)
T d1pjxa_ 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred CCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCEEE
T ss_conf 99897173996999999998754023452999999989999599997776556788530699907999899997798399
Q ss_pred EEECCCCCCEEEEECC-CC----CCEEEEEECCCCCEEEEEEEC---------------CCCEEEEECCCCEEEEEEE--
Q ss_conf 9948999952588426-88----865899963899909999808---------------9929999958990568863--
Q 002591 691 VWDADNPGYSLRTFMG-HS----ASVMSLDFHPNKDDLICSCDG---------------DGEIRYWSINNGSCTRVFK-- 748 (903)
Q Consensus 691 IWdl~~~~~~~~~~~~-h~----~~V~si~fsp~~~~ll~sgs~---------------Dg~I~iwDi~~~~~~~~~~-- 748 (903)
.++.+. . ....+.. .. .....+.+.+++. +.++-.. +|.|+.++.. ++......
T Consensus 96 ~~~~~g-~-~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~ 171 (314)
T d1pjxa_ 96 VVQTDG-T-FEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF 171 (314)
T ss_dssp EEETTS-C-EEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE
T ss_pred EEECCC-C-EEEEEECCCCCCCCCCCCEEEECCCCC-EEEECCCCCCCCCCCCCEECCCCCEEEEEEEC-CCEEEEECCC
T ss_conf 994777-4-799973343245457872789888998-99914866754320110002688438999525-7403750785
Q ss_pred CCCEEEEEECCCC----EEEEE-ECCCEEEEEECCCCEEE------EEECC-CCCCEEEEEECCCCCEEEEEECC-EEEE
Q ss_conf 5810699914999----89999-76992999988997089------99507-99884899992899999999399-2999
Q 002591 749 GGTAQMRFQPHLG----RYLAA-AAENVVSILDAETQACR------LSLQG-HTKPIDSVCWDPSGELLASVSED-SVRV 815 (903)
Q Consensus 749 ~~~~~i~~sp~~~----~ll~~-s~dg~I~i~D~~t~~~~------~~l~~-h~~~V~si~~spdg~~lasgs~d-~I~i 815 (903)
...+.+.|++++. .++++ ...+.|..||+.....+ ..+.. .......+++..+|+++++.... .|.+
T Consensus 172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~ 251 (314)
T d1pjxa_ 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CEEEEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCEEEE
T ss_conf 32213699788776303799986024311776116765430156899713356664102578347857999827999999
Q ss_pred EECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECC
Q ss_conf 98788998613788403999539999917999899998-79929999889
Q 002591 816 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS 864 (903)
Q Consensus 816 wdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s-~dg~I~iwdl~ 864 (903)
||...+ ..+..+........+++|.++++.|++.. .++.|+.+++.
T Consensus 252 ~dp~~g---~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 252 FGPDGG---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp ECTTCB---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EECCCC---EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 969999---79999979999878999928989999998789919999789
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.20 E-value=7.9e-08 Score=62.06 Aligned_cols=195 Identities=12% Similarity=0.127 Sum_probs=117.9
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCC----CCEEEEEECCCCCEEEEEECC-------------C
Q ss_conf 86999994899999999589929999789992347841589----976899999999989999489-------------9
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS----SLITDVRFSPSMPRLATSSFD-------------K 687 (903)
Q Consensus 625 ~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~----~~V~~i~fspdg~~Lasgs~D-------------g 687 (903)
.-..++|.+++..|+++.....|..++.+............ ...+++.+.++|.+.++-... .
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~ 151 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK 151 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCEECCC
T ss_conf 53069990799989999779839999477747999733432454578727898889989991486675432011000268
Q ss_pred CEEEEECCCCCCEEEEECCCCCCEEEEEECCCCC----EEEEEEECCCCEEEEECCCCEEEE---EE---EC----CCEE
Q ss_conf 3999948999952588426888658999638999----099998089929999958990568---86---35----8106
Q 002591 688 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD----DLICSCDGDGEIRYWSINNGSCTR---VF---KG----GTAQ 753 (903)
Q Consensus 688 ~I~IWdl~~~~~~~~~~~~h~~~V~si~fsp~~~----~ll~sgs~Dg~I~iwDi~~~~~~~---~~---~~----~~~~ 753 (903)
.-++|.+...+....... .-..-..++|+++++ .++++-...+.|+.|++.....+. .+ .. ....
T Consensus 152 ~G~v~~~~~dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdG 230 (314)
T d1pjxa_ 152 FGSIYCFTTDGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG 230 (314)
T ss_dssp CEEEEEECTTSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred CCEEEEEEECCCEEEEEC-CCCEEEEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEE
T ss_conf 843899952574037507-8532213699788776303799986024311776116765430156899713356664102
Q ss_pred EEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCE-EEEEECC-EEEEEECCC
Q ss_conf 999149998999976992999988997089995079988489999289999-9999399-299998788
Q 002591 754 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL-LASVSED-SVRVWTVGS 820 (903)
Q Consensus 754 i~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~-lasgs~d-~I~iwdl~s 820 (903)
+++..+++.+++....+.|.+||.+.+..+..+.......++++|.++++. +++.+.+ .|..+++..
T Consensus 231 iavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEECCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCC
T ss_conf 578347857999827999999969999799999799998789999289899999987899199997899
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.18 E-value=1e-07 Score=61.33 Aligned_cols=229 Identities=10% Similarity=0.129 Sum_probs=108.2
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCC------CCCEEEEEECCCCC-EEEEE-ECCCCEEEEECCC
Q ss_conf 8699999489999999958992999978999234784158------99768999999999-89999-4899399994899
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH------SSLITDVRFSPSMP-RLATS-SFDKTVRVWDADN 696 (903)
Q Consensus 625 ~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h------~~~V~~i~fspdg~-~Lasg-s~Dg~I~IWdl~~ 696 (903)
....++++++++++++-.....|++||.+ ++.+..+... ...-..+.+..+.. .+++. +.++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC-
T ss_conf 90079994999899997998989999699-9999981665788664226630001234455200004775310000025-
Q ss_pred CCCEEEEEC-CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC-----CCEEEEEECCCCEEEEEECCC
Q ss_conf 995258842-68886589996389990999980899299999589905688635-----810699914999899997699
Q 002591 697 PGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAEN 770 (903)
Q Consensus 697 ~~~~~~~~~-~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~-----~~~~i~~sp~~~~ll~~s~dg 770 (903)
+.....+. ........+++.+++. ++++....+.+.+++.. ++.+..+.. ....+++.+++..+++....+
T Consensus 102 -g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~ 178 (279)
T d1q7fa_ 102 -GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH 178 (279)
T ss_dssp -SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred -CCCEEECCCCCCCCCCEECCCCCCC-EEEEEECCCEEEEECCC-CCEEECCCCCCCCCCCCEEEECCCEEEEEEECCCC
T ss_conf -6302403888642542000014784-79996326325676268-75010022001025662432012001786201355
Q ss_pred EEEEEECCCCEEEEEEC--CCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEEEC--CCCCEEEEEEEC
Q ss_conf 29999889970899950--799884899992899999999399--299998788998613788403--999539999917
Q 002591 771 VVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC--NGNKFHSCVFHP 844 (903)
Q Consensus 771 ~I~i~D~~t~~~~~~l~--~h~~~V~si~~spdg~~lasgs~d--~I~iwdl~s~~~~~~i~~~~~--~~~~i~~i~~sp 844 (903)
.|.+||.. ++.+..+. +.......|+++++|+++++-..+ .|.+|+.. + +.+..+.. .......+++.+
T Consensus 179 ~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G---~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 179 CVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp EEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEEEEEET
T ss_pred CEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC-C---CEEEEEECCCCCCCEEEEEEEC
T ss_conf 10023047-94445301132114876232314786999978998089999999-9---9999996888889883799908
Q ss_pred CCCEEEEEECCCEEEEEECC
Q ss_conf 99989999879929999889
Q 002591 845 TYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 845 ~g~~lit~s~dg~I~iwdl~ 864 (903)
++. |+++..++.|++|...
T Consensus 254 dG~-l~V~~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 254 DGS-VVLASKDYRLYIYRYV 272 (279)
T ss_dssp TTE-EEEEETTTEEEEEECS
T ss_pred CCC-EEEEECCCEEEEEEEE
T ss_conf 991-9999189969998722
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.14 E-value=1.5e-07 Score=60.21 Aligned_cols=155 Identities=9% Similarity=0.048 Sum_probs=82.5
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC----CCEEEEECCCC
Q ss_conf 99986999994899999999589929999789992347841589976899999999989999489----93999948999
Q 002591 622 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD----KTVRVWDADNP 697 (903)
Q Consensus 622 H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D----g~I~IWdl~~~ 697 (903)
....+..++|.++|+++++-...+.|+.|+.++......+.........++|.++++++++...+ +.|...+...
T Consensus 38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~- 116 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG- 116 (319)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-
T ss_pred CCCCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCC-
T ss_conf 8867470789999999999779999999989999599999489987038999999999999568973110499873899-
Q ss_pred CCEEEEECC--CCCCEEEEEECCCCCEEEEEEEC------CCCEEEEECCCCEEEEEEE--CCCEEEEEECCCCEEEEEE
Q ss_conf 952588426--88865899963899909999808------9929999958990568863--5810699914999899997
Q 002591 698 GYSLRTFMG--HSASVMSLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAA 767 (903)
Q Consensus 698 ~~~~~~~~~--h~~~V~si~fsp~~~~ll~sgs~------Dg~I~iwDi~~~~~~~~~~--~~~~~i~~sp~~~~ll~~s 767 (903)
......... .......+.+.+++. ++++... .+.+..++........... .....+.|+++++.++++.
T Consensus 117 ~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad 195 (319)
T d2dg1a1 117 DNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE 195 (319)
T ss_dssp CSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred CEEEEECCCCCCCCCCCCEEEEECCC-EEECCCCCCCCCCCCEEEEEECCCCEEEEEEECCCEEEEEEECCCCCEEEEEC
T ss_conf 63644426777555875226773065-32001354002574215788416633578861233010001012221278740
Q ss_pred -CCCEEEEEECC
Q ss_conf -69929999889
Q 002591 768 -AENVVSILDAE 778 (903)
Q Consensus 768 -~dg~I~i~D~~ 778 (903)
..+.|+.|++.
T Consensus 196 ~~~~~I~~~d~~ 207 (319)
T d2dg1a1 196 TTANRLHRIALE 207 (319)
T ss_dssp GGGTEEEEEEEC
T ss_pred CCCCCEEEEEEC
T ss_conf 468914799976
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.14 E-value=1.2e-07 Score=61.01 Aligned_cols=155 Identities=15% Similarity=0.112 Sum_probs=80.3
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC-EEEEE--CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 99986999994899999999589929999789992-34784--1589976899999999989999489939999489999
Q 002591 622 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNL--EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 698 (903)
Q Consensus 622 H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~-~~~~l--~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWdl~~~~ 698 (903)
....+.+++|+++|+++++...++.+.+|+..... ....+ .........+.+.+++.++++.+.++.+..++.....
T Consensus 66 ~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~ 145 (302)
T d2p4oa1 66 VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS 145 (302)
T ss_dssp CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEECCCCC
T ss_conf 79985368986778869983289537888710111101210235786322166771579787503565541024216873
Q ss_pred CEEEEEC---------CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEE---E--ECCCEEEEEECCCCEEE
Q ss_conf 5258842---------68886589996389990999980899299999589905688---6--35810699914999899
Q 002591 699 YSLRTFM---------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV---F--KGGTAQMRFQPHLGRYL 764 (903)
Q Consensus 699 ~~~~~~~---------~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~---~--~~~~~~i~~sp~~~~ll 764 (903)
..+.... ........+.+. +..++++....+.|+.+++........ + ......+++.+++..++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~v 223 (302)
T d2p4oa1 146 GSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG 223 (302)
T ss_dssp EEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE
T ss_pred CEEEECCCCCCEEECCCCCCCCCCCCCC--CCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEE
T ss_conf 0367518864014315763224320116--98304403788769863443333234531015899875237879999999
Q ss_pred EEECCCEEEEEECC
Q ss_conf 99769929999889
Q 002591 765 AAAAENVVSILDAE 778 (903)
Q Consensus 765 ~~s~dg~I~i~D~~ 778 (903)
+...++.|..++..
T Consensus 224 a~~~~~~V~~i~p~ 237 (302)
T d2p4oa1 224 ATHIYNSVVRIAPD 237 (302)
T ss_dssp ECBTTCCEEEECTT
T ss_pred EECCCCCEEEECCC
T ss_conf 97489918998789
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.08 E-value=2.8e-07 Score=58.49 Aligned_cols=185 Identities=11% Similarity=0.055 Sum_probs=100.8
Q ss_pred ECCCCCEEEEEECCCCCEEEEEECC----CCEEEEECCCCCEEEEECC--CCCCEEEEEECCCCCEEEEEECC------C
Q ss_conf 1499986999994899999999589----9299997899923478415--89976899999999989999489------9
Q 002591 620 RASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFD------K 687 (903)
Q Consensus 620 ~~H~~~V~~i~fspdg~~Latgs~D----g~I~IWd~~t~~~~~~l~~--h~~~V~~i~fspdg~~Lasgs~D------g 687 (903)
.........++|++||.++++...+ +.|...+............ .......+.+.++|++.++.... +
T Consensus 78 ~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g 157 (319)
T d2dg1a1 78 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 157 (319)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred ECCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCC
T ss_conf 48998703899999999999956897311049987389963644426777555875226773065320013540025742
Q ss_pred CEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCE-EEEEEE----------CCCEEEEE
Q ss_conf 3999948999952588426888658999638999099998089929999958990-568863----------58106999
Q 002591 688 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK----------GGTAQMRF 756 (903)
Q Consensus 688 ~I~IWdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~-~~~~~~----------~~~~~i~~ 756 (903)
.+..++.+ +..+..+...-.....++|+++++.++++-...+.|+.|++.... ...... .....+++
T Consensus 158 ~v~~~~~d--g~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~v 235 (319)
T d2dg1a1 158 GVYYVSPD--FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI 235 (319)
T ss_dssp EEEEECTT--SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE
T ss_pred EEEEEECC--CCEEEEEEECCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEE
T ss_conf 15788416--6335788612330100010122212787404689147999769983620246333312577641036417
Q ss_pred ECCCCEEEEEECCCEEEEEECCCCEEEEEECC------CCCCEEEEEECCCCCEEEE
Q ss_conf 14999899997699299998899708999507------9988489999289999999
Q 002591 757 QPHLGRYLAAAAENVVSILDAETQACRLSLQG------HTKPIDSVCWDPSGELLAS 807 (903)
Q Consensus 757 sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~------h~~~V~si~~spdg~~las 807 (903)
..+++.+++....+.|.+||. .++.+..+.. +...+++++|.++...+++
T Consensus 236 D~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~ 291 (319)
T d2dg1a1 236 DSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLII 291 (319)
T ss_dssp BTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred CCCCCEEEEECCCCEEEEECC-CCCEEEEEECCCCCCCCCCEEEEEEEECCCCEEEE
T ss_conf 389999999848998999979-99598899688757786750466778079988999
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.08 E-value=2.9e-07 Score=58.42 Aligned_cols=231 Identities=9% Similarity=0.037 Sum_probs=118.4
Q ss_pred EECCC--CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC-CC-----CEEEEECCCCCCEE
Q ss_conf 99489--999999958992999978999234784158997689999999998999948-99-----39999489999525
Q 002591 630 HFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DK-----TVRVWDADNPGYSL 701 (903)
Q Consensus 630 ~fspd--g~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~-Dg-----~I~IWdl~~~~~~~ 701 (903)
..+|| |+.+|..+ ++.|.+.|+..++. ..+..+...+...+|+|||+.|+.... ++ .|.+++... +. .
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~-g~-~ 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN-GE-I 80 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT-TE-E
T ss_pred CCCCCCCCCEEEEEE-CCCEEEEECCCCCE-EEEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECC-CC-E
T ss_conf 258887999999990-99689998999987-99766998526779878999899998628987722899998259-95-2
Q ss_pred EEECCC-------CCCEEEEEECCCCCEEEEEEECC-----CCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEECC
Q ss_conf 884268-------88658999638999099998089-----929999958990568863581069991499989999769
Q 002591 702 RTFMGH-------SASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE 769 (903)
Q Consensus 702 ~~~~~h-------~~~V~si~fsp~~~~ll~sgs~D-----g~I~iwDi~~~~~~~~~~~~~~~i~~sp~~~~ll~~s~d 769 (903)
+.+..+ ........|+|++..++++...+ ..+...+.............. ...+.+++..++.....
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 159 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPA-THILFADGRRVIGRNTF 159 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSC-SEEEEETTEEEEEESCS
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCC-CEEEECCCCEEEEEECC
T ss_conf 88641688754764443431027988779999713787652024651587760688017865-23464699849886204
Q ss_pred ------------CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEEECCCC
Q ss_conf ------------929999889970899950799884899992899999999399--299998788998613788403999
Q 002591 770 ------------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGN 835 (903)
Q Consensus 770 ------------g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d--~I~iwdl~s~~~~~~i~~~~~~~~ 835 (903)
................ ...........+.++..++.....+ .|.++|+..... +. +.. ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~---lt~-~~ 233 (281)
T d1k32a2 160 ELPHWKGYRGGTRGKIWIEVNSGAFKKI-VDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL-RK---HTS-FT 233 (281)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEE-ECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSC-EE---CCC-CC
T ss_pred CCCEEEEECCCCCCEEEEECCCCCEEEC-CCCCCCCCEEEEECCCCCEECCCCCCCCEEEEECCCCCE-EE---EEC-CC
T ss_conf 6640444205886204441136612240-477666421331035320001134552128996899965-98---105-89
Q ss_pred CEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEC
Q ss_conf 5399999179998999987992999988999088981
Q 002591 836 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT 872 (903)
Q Consensus 836 ~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~~~~ 872 (903)
......|+|+|+.|+.. .++.|+++|+.+++...+.
T Consensus 234 ~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~ 269 (281)
T d1k32a2 234 DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIE 269 (281)
T ss_dssp SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECC
T ss_pred CCCCCCCCCCCCEEEEE-ECCEEEEEECCCCCEEEEC
T ss_conf 86443286798999998-5999999989999878842
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.04 E-value=4.2e-07 Score=57.37 Aligned_cols=227 Identities=13% Similarity=0.134 Sum_probs=130.0
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECC------CCCCEEEEEECCCCCEEEEEE-ECCCCEEEEECC
Q ss_conf 7689999999998999948993999948999952588426------888658999638999099998-089929999958
Q 002591 667 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSC-DGDGEIRYWSIN 739 (903)
Q Consensus 667 ~V~~i~fspdg~~Lasgs~Dg~I~IWdl~~~~~~~~~~~~------h~~~V~si~fsp~~~~ll~sg-s~Dg~I~iwDi~ 739 (903)
.-..|++.++++++++-..+..|++||.+ +..++.+.. .......+.+..+...++++. +.++.|.+++.
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~--G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 100 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ- 100 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEECC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC-
T ss_conf 90079994999899997998989999699--999998166578866422663000123445520000477531000002-
Q ss_pred CCEEEEEEEC----CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEE--CCCCCCEEEEEECCCCCEEEEEECC-E
Q ss_conf 9905688635----8106999149998999976992999988997089995--0799884899992899999999399-2
Q 002591 740 NGSCTRVFKG----GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL--QGHTKPIDSVCWDPSGELLASVSED-S 812 (903)
Q Consensus 740 ~~~~~~~~~~----~~~~i~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l--~~h~~~V~si~~spdg~~lasgs~d-~ 812 (903)
.+.....+.. ....+.+.+++..+++....+.+.+++.. ++.+..+ ..+......+++.++++++++.... .
T Consensus 101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred CCCCEEECCCCCCCCCCEECCCCCCCEEEEEECCCEEEEECCC-CCEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCC
T ss_conf 5630240388864254200001478479996326325676268-750100220010256624320120017862013551
Q ss_pred EEEEECCCCCCCCEEEEEE--CCCCCEEEEEEECCCCEEEEEEC-CCEEEEEECCCCCEE-EEC--CCCCCEEEEEEECC
Q ss_conf 9999878899861378840--39995399999179998999987-992999988999088-981--57897789999369
Q 002591 813 VRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKTM-TLT--AHEGLIAALAVSTE 886 (903)
Q Consensus 813 I~iwdl~s~~~~~~i~~~~--~~~~~i~~i~~sp~g~~lit~s~-dg~I~iwdl~~~~~~-~~~--~h~~~V~sl~~spd 886 (903)
|++|+... ..+..+. ........+++.++++.+++-.. +..|.+|+.. ++.+ .+. ........+++.++
T Consensus 180 V~~~d~~G----~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~d 254 (279)
T d1q7fa_ 180 VKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDD 254 (279)
T ss_dssp EEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETT
T ss_pred EEEEECCC----CEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC-CCEEEEEECCCCCCCEEEEEEECC
T ss_conf 00230479----4445301132114876232314786999978998089999999-999999968888898837999089
Q ss_pred CCEEEEEECCCCEEECC
Q ss_conf 99999995698399909
Q 002591 887 TGYVASASHDKFVKLWK 903 (903)
Q Consensus 887 g~~LaSgs~DG~I~IWd 903 (903)
+.+++ ++.+.+|++|+
T Consensus 255 G~l~V-~~~n~~v~~fr 270 (279)
T d1q7fa_ 255 GSVVL-ASKDYRLYIYR 270 (279)
T ss_dssp TEEEE-EETTTEEEEEE
T ss_pred CCEEE-EECCCEEEEEE
T ss_conf 91999-91899699987
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.59 E-value=1.3e-05 Score=47.82 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=40.2
Q ss_pred CEEEEEECCCCCEEEEEECC-CCEEEEECCCCCEEEEECC-CCCCEEEEEECCCCCEEEEEECC------CCEEEEECCC
Q ss_conf 86999994899999999589-9299997899923478415-89976899999999989999489------9399994899
Q 002591 625 KVICCHFSSDGKLLATGGHD-KKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFD------KTVRVWDADN 696 (903)
Q Consensus 625 ~V~~i~fspdg~~Latgs~D-g~I~IWd~~t~~~~~~l~~-h~~~V~~i~fspdg~~Lasgs~D------g~I~IWdl~~ 696 (903)
.....++.+++.+++.|+.+ ..+.+||..+..-...-.. ....-...+...|+++++.++.+ ..+.+||..+
T Consensus 77 ~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 77 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred CEEEEEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCC
T ss_conf 25689994688689863688862167567557442156566421013035531782665213663335432056634888
Q ss_pred C
Q ss_conf 9
Q 002591 697 P 697 (903)
Q Consensus 697 ~ 697 (903)
.
T Consensus 157 ~ 157 (387)
T d1k3ia3 157 K 157 (387)
T ss_dssp T
T ss_pred C
T ss_conf 9
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.55 E-value=1.7e-05 Score=47.06 Aligned_cols=196 Identities=8% Similarity=0.057 Sum_probs=101.8
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEEC-CC-----CEEEEECCCCCEEEEEC------CCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 74149998699999489999999958-99-----29999789992347841------58997689999999998999948
Q 002591 618 SVRASTSKVICCHFSSDGKLLATGGH-DK-----KAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSSF 685 (903)
Q Consensus 618 ~l~~H~~~V~~i~fspdg~~Latgs~-Dg-----~I~IWd~~t~~~~~~l~------~h~~~V~~i~fspdg~~Lasgs~ 685 (903)
.+..+.+.+...+|||||+.||.... ++ .|.+++..+++...... ..........|+|+++.|+....
T Consensus 35 ~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 114 (281)
T d1k32a2 35 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA 114 (281)
T ss_dssp EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred EEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 97669985267798789998999986289877228999982599528864168875476444343102798877999971
Q ss_pred C------CCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCC-----------CEEEEECCCCEEEEEEE
Q ss_conf 9------939999489999525884268886589996389990999980899-----------29999958990568863
Q 002591 686 D------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----------EIRYWSINNGSCTRVFK 748 (903)
Q Consensus 686 D------g~I~IWdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg-----------~I~iwDi~~~~~~~~~~ 748 (903)
. ..+.+.+... ....... ......+ |.+++..+++....+. ....+............
T Consensus 115 ~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (281)
T d1k32a2 115 MQPFSSMTCLYRVENDG--INFVPLN--LGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVD 189 (281)
T ss_dssp TSSSTTCCEEEEEEGGG--TEEEECC--SCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEEC
T ss_pred CCCCCCCEEEEEECCCC--CEEEEEC--CCCCCEE-EECCCCEEEEEECCCCCEEEEECCCCCCEEEEECCCCCEEECCC
T ss_conf 37876520246515877--6068801--7865234-64699849886204664044420588620444113661224047
Q ss_pred CC--CEEEEEECCCCEEEEEEC---CCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCC
Q ss_conf 58--106999149998999976---992999988997089995079988489999289999999939929999878899
Q 002591 749 GG--TAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS 822 (903)
Q Consensus 749 ~~--~~~i~~sp~~~~ll~~s~---dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d~I~iwdl~s~~ 822 (903)
.. .....+.. ..++.... ...|+++|+............. .....|+|||+.|+......|+++|+.+++
T Consensus 190 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~--~~~~~~SpDG~~I~f~~~~~l~~~d~~~g~ 264 (281)
T d1k32a2 190 MSTHVSSPVIVG--HRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD--YYPRHLNTDGRRILFSKGGSIYIFNPDTEK 264 (281)
T ss_dssp CSSCCEEEEEET--TEEEEEECTTSSCEEEEEETTSCSCEECCCCCS--SCEEEEEESSSCEEEEETTEEEEECTTTCC
T ss_pred CCCCCCEEEEEC--CCCCEECCCCCCCCEEEEECCCCCEEEEECCCC--CCCCCCCCCCCEEEEEECCEEEEEECCCCC
T ss_conf 766642133103--532000113455212899689996598105898--644328679899999859999999899998
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.48 E-value=2.5e-05 Score=46.01 Aligned_cols=229 Identities=14% Similarity=0.059 Sum_probs=114.1
Q ss_pred EEEECC---CCCEEEEEE-CCCCEEEEECCCCCEEEEECC-CCCCEEEEEECC--CCCEEEEEECCC-------------
Q ss_conf 999948---999999995-899299997899923478415-899768999999--999899994899-------------
Q 002591 628 CCHFSS---DGKLLATGG-HDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSP--SMPRLATSSFDK------------- 687 (903)
Q Consensus 628 ~i~fsp---dg~~Latgs-~Dg~I~IWd~~t~~~~~~l~~-h~~~V~~i~fsp--dg~~Lasgs~Dg------------- 687 (903)
.+.|.. ||++|++.. .+..|.+.|+++.++...+.. ....+..++..+ +..+++..+.+.
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCH
T ss_conf 51444885551289997589863899988540566799667887775012025797479973676544459998513240
Q ss_pred -----CEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECC-CCEEEEECCCCEEEE--EEECCCEEEEEECC
Q ss_conf -----3999948999952588426888658999638999099998089-929999958990568--86358106999149
Q 002591 688 -----TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTR--VFKGGTAQMRFQPH 759 (903)
Q Consensus 688 -----~I~IWdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~D-g~I~iwDi~~~~~~~--~~~~~~~~i~~sp~ 759 (903)
.+.++|..+ .+....+. -......+.++++++.+++++... ..+.+.++.....-. .+... ....+.++
T Consensus 169 ~~y~~~~t~ID~~t-m~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~-rie~av~~ 245 (459)
T d1fwxa2 169 ANYVNVFTAVDADK-WEVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA-EIEKAIAA 245 (459)
T ss_dssp G-EEEEEEEEETTT-TEEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH-HHHHHHHH
T ss_pred HHCCEEEEEEECCC-CEEEEEEE-ECCCHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCEEEEEECHH-HHHHHHHC
T ss_conf 11226899996677-66989964-08972015318999989997135568853222252454189996348-86876405
Q ss_pred CCEEEEEECCCEEEEEECCCC---EEEEEECCCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCC--------CCCCE
Q ss_conf 998999976992999988997---0899950799884899992899999999399--2999987889--------98613
Q 002591 760 LGRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG--------SEGEC 826 (903)
Q Consensus 760 ~~~ll~~s~dg~I~i~D~~t~---~~~~~l~~h~~~V~si~~spdg~~lasgs~d--~I~iwdl~s~--------~~~~~ 826 (903)
++.-. -+.+.+.|.++. ..+..+.. ....+.+.++|||+++++++.- ++.++|++.. ....+
T Consensus 246 Gk~~e----ingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~ 320 (459)
T d1fwxa2 246 GDYQE----LNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 320 (459)
T ss_dssp TCSEE----ETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred CCCEE----ECCCEEECCCCCCCCCEEEEEEC-CCCCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCC
T ss_conf 99379----69946615423678520389865-89877338899997899938858957999822535665046884521
Q ss_pred EEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 78840399953999991799989999879929999889
Q 002591 827 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 827 i~~~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~ 864 (903)
+..-...+-......|...|....+.--|..|.-|++.
T Consensus 321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred EEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECC
T ss_conf 79611357676620338984299986123169997344
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.42 E-value=3.5e-05 Score=44.98 Aligned_cols=216 Identities=14% Similarity=0.123 Sum_probs=83.3
Q ss_pred EEEECCC-CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECC
Q ss_conf 9999489-999999958992999978999234784158997689999999998999948993999948999952588426
Q 002591 628 CCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 706 (903)
Q Consensus 628 ~i~fspd-g~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWdl~~~~~~~~~~~~ 706 (903)
+..|.+. +.++.+--..+.|..||.+++... .+. ....+.++.+.+++.++++ +.+| |.++|..+ ++.......
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~g-l~~~d~~t-g~~~~l~~~ 96 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDDG-LFLRDTAT-GVLTLHAEL 96 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETTE-EEEEETTT-CCEEEEECS
T ss_pred CCEEECCCCEEEEEECCCCEEEEEECCCCEEE-EEE-CCCCCEEEEEECCCCEEEE-EECC-CEEEECCC-CEEEEEEEE
T ss_conf 87598999999999878999999989989599-998-9998179899659988999-7376-38950464-513578664
Q ss_pred ----CCCCEEEEEECCCCCEEEEEEEC---CCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEEEEEC-CCEEEEEE
Q ss_conf ----88865899963899909999808---99299999589905688635--8106999149998999976-99299998
Q 002591 707 ----HSASVMSLDFHPNKDDLICSCDG---DGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILD 776 (903)
Q Consensus 707 ----h~~~V~si~fsp~~~~ll~sgs~---Dg~I~iwDi~~~~~~~~~~~--~~~~i~~sp~~~~ll~~s~-dg~I~i~D 776 (903)
....+..+.+.+++..++.+... .+.-.+|.+..++....+.. ....+.|+++++.++.+.. .+.|+.|+
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~ 176 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVP 176 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred ECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf 04787661013579799999887426431333305766229968998650687640246587766898515663246764
Q ss_pred CCCC--------EEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEE-CCC
Q ss_conf 8997--------0899950799884899992899999999399-29999878899861378840399953999991-799
Q 002591 777 AETQ--------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH-PTY 846 (903)
Q Consensus 777 ~~t~--------~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s-p~g 846 (903)
+... .....+.+.......++++.+|++.++.-.. .|..||.. + +.+..+......+++|+|- ++.
T Consensus 177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G---~~~~~i~lP~~~~T~~~FGG~d~ 252 (295)
T d2ghsa1 177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G---NHIARYEVPGKQTTCPAFIGPDA 252 (295)
T ss_dssp BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C---CEEEEEECSCSBEEEEEEESTTS
T ss_pred ECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECCC-C---CEEEEECCCCCCEEEEEEECCCC
T ss_conf 5355553245357884167555666326786999989532078846885699-9---28668638998527989828999
Q ss_pred CEEEEE
Q ss_conf 989999
Q 002591 847 PSLLVI 852 (903)
Q Consensus 847 ~~lit~ 852 (903)
+.|++.
T Consensus 253 ~~LyvT 258 (295)
T d2ghsa1 253 SRLLVT 258 (295)
T ss_dssp CEEEEE
T ss_pred CEEEEE
T ss_conf 999999
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.40 E-value=4e-05 Score=44.62 Aligned_cols=181 Identities=17% Similarity=0.087 Sum_probs=106.8
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECC----CCCCEEEEEECCCCCEEEEEEC----CCCEEEEEC
Q ss_conf 99869999948999999995899299997899923478415----8997689999999998999948----993999948
Q 002591 623 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE----HSSLITDVRFSPSMPRLATSSF----DKTVRVWDA 694 (903)
Q Consensus 623 ~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~----h~~~V~~i~fspdg~~Lasgs~----Dg~I~IWdl 694 (903)
...+.++++.++|.++++ +.+ .|.++|..+++....... ....++++.+.++|.+.++... .+.-.+|.+
T Consensus 58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~ 135 (295)
T d2ghsa1 58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV 135 (295)
T ss_dssp SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred CCCCEEEEEECCCCEEEE-EEC-CCEEEECCCCEEEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEE
T ss_conf 998179899659988999-737-638950464513578664047876610135797999998874264313333057662
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEE-----EEEE------ECCCEEEEEECCCCEE
Q ss_conf 9999525884268886589996389990999980899299999589905-----6886------3581069991499989
Q 002591 695 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-----TRVF------KGGTAQMRFQPHLGRY 763 (903)
Q Consensus 695 ~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~-----~~~~------~~~~~~i~~sp~~~~l 763 (903)
.. +.....+. .-.....++|++++..++++.+..+.|..+++..... ...+ .+....+++..+++.+
T Consensus 136 ~~-g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlW 213 (295)
T d2ghsa1 136 AK-GKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW 213 (295)
T ss_dssp ET-TEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred CC-CCEEEEEE-CCCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEE
T ss_conf 29-96899865-06876402465877668985156632467645355553245357884167555666326786999989
Q ss_pred EEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEC-CCCC-EEEEE
Q ss_conf 999769929999889970899950799884899992-8999-99999
Q 002591 764 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD-PSGE-LLASV 808 (903)
Q Consensus 764 l~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~s-pdg~-~lasg 808 (903)
++....+.|..||. .++.+..+......+++++|- ++.+ ++++.
T Consensus 214 va~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 214 NARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp EEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred EEEECCCCEEEECC-CCCEEEEECCCCCCEEEEEEECCCCCEEEEEE
T ss_conf 53207884688569-99286686389985279898289999999997
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.21 E-value=0.0001 Score=41.98 Aligned_cols=49 Identities=10% Similarity=-0.052 Sum_probs=32.8
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEECCCCCCE--EEEEEECCCC-EEEEE
Q ss_conf 9998999987992999988999088981578977--8999936999-99999
Q 002591 845 TYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLI--AALAVSTETG-YVASA 893 (903)
Q Consensus 845 ~g~~lit~s~dg~I~iwdl~~~~~~~~~~h~~~V--~sl~~spdg~-~LaSg 893 (903)
.+..+++++.|+.++.+|.++++.+........+ .-+.|..+|+ ||++.
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~ 525 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCEEEEEEE
T ss_conf 6997999778996999999998687899899996515648988999999999
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.03 E-value=0.00023 Score=39.71 Aligned_cols=203 Identities=9% Similarity=-0.042 Sum_probs=95.9
Q ss_pred CCCCCEEEEEECCCCCEEEEE-ECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEE-ECCCCEEEEECCCCC
Q ss_conf 499986999994899999999-589929999789992347841589976899999999989999-489939999489999
Q 002591 621 ASTSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPG 698 (903)
Q Consensus 621 ~H~~~V~~i~fspdg~~Latg-s~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~I~IWdl~~~~ 698 (903)
.+...|.+++|....+.|+.+ ..++.|+..+++.......+......+.++++..-+..|+.+ ...+.|.+.+++. .
T Consensus 33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg-~ 111 (263)
T d1npea_ 33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG-T 111 (263)
T ss_dssp EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS-C
T ss_pred CCCCCEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEEECCC-C
T ss_conf 687757999998589999999899991999976658728988701264207999636886888426789799880588-1
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEE--ECCCCEEEEEEECCCEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 52588426888658999638999099998089929999--9589905688635810699914999899997699299998
Q 002591 699 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW--SINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 776 (903)
Q Consensus 699 ~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iw--Di~~~~~~~~~~~~~~~i~~sp~~~~ll~~s~dg~I~i~D 776 (903)
.....+.........+++.|....++.+....+..+|| ++........
T Consensus 112 ~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i------------------------------ 161 (263)
T d1npea_ 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL------------------------------ 161 (263)
T ss_dssp SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE------------------------------
T ss_pred EEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCEEE------------------------------
T ss_conf 67777125666872799925669279953489976899966789972365------------------------------
Q ss_pred CCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEE-
Q ss_conf 89970899950799884899992899999999399--299998788998613788403999539999917999899998-
Q 002591 777 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG- 853 (903)
Q Consensus 777 ~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s- 853 (903)
....-.....+++++.+..|+.+... .|...++... .....+.. ......+++. +.+|+...
T Consensus 162 ---------~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~---~~~~v~~~-~~~P~~lav~--~~~lYwtd~ 226 (263)
T d1npea_ 162 ---------AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEG-LQYPFAVTSY--GKNLYYTDW 226 (263)
T ss_dssp ---------ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEEC-CCSEEEEEEE--TTEEEEEET
T ss_pred ---------EEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCC---CEEEEECC-CCCCEEEEEE--CCEEEEEEC
T ss_conf ---------53035555307995047589999289999999999999---76999889-9986899999--999999999
Q ss_pred CCCEEEEEECCCCCEE
Q ss_conf 7992999988999088
Q 002591 854 CYQSLELWNMSENKTM 869 (903)
Q Consensus 854 ~dg~I~iwdl~~~~~~ 869 (903)
..+.|...|..+++..
T Consensus 227 ~~~~I~~~~~~~g~~~ 242 (263)
T d1npea_ 227 KTNSVIAMDLAISKEM 242 (263)
T ss_dssp TTTEEEEEETTTTEEE
T ss_pred CCCEEEEEECCCCCCC
T ss_conf 9997999989899510
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.93 E-value=0.00036 Score=38.51 Aligned_cols=79 Identities=6% Similarity=0.107 Sum_probs=41.0
Q ss_pred EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEE--EEEEECCCC-
Q ss_conf 29999878899861378840399953999991799989999879929999889990889815789778--999936999-
Q 002591 812 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIA--ALAVSTETG- 888 (903)
Q Consensus 812 ~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~~~~~h~~~V~--sl~~spdg~- 888 (903)
.+.-||+.++ +.+..... ......-.....+..+++++.|+.++.||.++++.+........+. -+.|..+|+
T Consensus 439 ~l~A~D~~tG---k~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq 514 (560)
T d1kv9a2 439 ALLAWDPVKQ---KAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ 514 (560)
T ss_dssp EEEEEETTTT---EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CEEEEECCCC---EEEEECCC-CCCCCCCEEEECCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf 4688707788---37310257-8888774059879989997789819999999985827998999955167799989999
Q ss_pred EEEEEE
Q ss_conf 999995
Q 002591 889 YVASAS 894 (903)
Q Consensus 889 ~LaSgs 894 (903)
||+...
T Consensus 515 yv~v~a 520 (560)
T d1kv9a2 515 YVAIMA 520 (560)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999991
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.87 E-value=0.00045 Score=37.86 Aligned_cols=241 Identities=11% Similarity=0.068 Sum_probs=123.1
Q ss_pred CEEEEEEEE-CCCCCEEEEEECC--CCCEEEEEECC------------------CCEEEEECCCCCEEEEECCCCCCEEE
Q ss_conf 203644741-4999869999948--99999999589------------------92999978999234784158997689
Q 002591 612 SFKEANSVR-ASTSKVICCHFSS--DGKLLATGGHD------------------KKAVLWHTDTLKSKTNLEEHSSLITD 670 (903)
Q Consensus 612 ~~~~~~~l~-~H~~~V~~i~fsp--dg~~Latgs~D------------------g~I~IWd~~t~~~~~~l~~h~~~V~~ 670 (903)
.++....+. .....+..++..+ +..|++.++.+ +.+.++|.++.+....+... .....
T Consensus 119 ~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~ 197 (459)
T d1fwxa2 119 VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS-GNLDN 197 (459)
T ss_dssp TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES-SCCCC
T ss_pred CEEEEEEEECCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCEEEEEEECCCCEEEEEEEEC-CCHHC
T ss_conf 40566799667887775012025797479973676544459998513240112268999966776698996408-97201
Q ss_pred EEECCCCCEEEEEECCCC--EEEEECCCCCCEEEEECCCCCCEEEEEE------CCCCCEEEEEEECCCCEEEEECCCC-
Q ss_conf 999999998999948993--9999489999525884268886589996------3899909999808992999995899-
Q 002591 671 VRFSPSMPRLATSSFDKT--VRVWDADNPGYSLRTFMGHSASVMSLDF------HPNKDDLICSCDGDGEIRYWSINNG- 741 (903)
Q Consensus 671 i~fspdg~~Lasgs~Dg~--I~IWdl~~~~~~~~~~~~h~~~V~si~f------sp~~~~ll~sgs~Dg~I~iwDi~~~- 741 (903)
+.++++|+++++.+.+.. +.+.++.. .. .+.+....| .++++...+ +.+.+.|.+..
T Consensus 198 ~~~s~dGK~af~TsyNSE~g~~l~e~ta-~e--------~D~i~V~n~~rie~av~~Gk~~ei-----ngV~VVD~~~~~ 263 (459)
T d1fwxa2 198 CDADYEGKWAFSTSYNSEKGMTLPEMTA-AE--------MDHIVVFNIAEIEKAIAAGDYQEL-----NGVKVVDGRKEA 263 (459)
T ss_dssp EEECSSSSEEEEEESCTTCCSSHHHHTC-CS--------EEEEEEEEHHHHHHHHHHTCSEEE-----TTEEEEECSGG-
T ss_pred CCCCCCCCEEEEEECCCCCCCCHHHCCC-CC--------CEEEEEECHHHHHHHHHCCCCEEE-----CCCEEECCCCCC
T ss_conf 5318999989997135568853222252-45--------418999634886876405993796-----994661542367
Q ss_pred --EEEEEEE--CCCEEEEEECCCCEEEEEEC-CCEEEEEECCCCE------------EEEEECCCCCCEEEEEECCCCCE
Q ss_conf --0568863--58106999149998999976-9929999889970------------89995079988489999289999
Q 002591 742 --SCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQA------------CRLSLQGHTKPIDSVCWDPSGEL 804 (903)
Q Consensus 742 --~~~~~~~--~~~~~i~~sp~~~~ll~~s~-dg~I~i~D~~t~~------------~~~~l~~h~~~V~si~~spdg~~ 804 (903)
..++.+. .....+.++|++.++++++. +..+.++|+++.. ...... ..-.-...+|+..|..
T Consensus 264 ~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~fd~~g~a 342 (459)
T d1fwxa2 264 SSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNA 342 (459)
T ss_dssp -CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEEEECTTSEE
T ss_pred CCCEEEEEECCCCCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECC-CCCCCCCCCCCCCCEE
T ss_conf 852038986589877338899997899938858957999822535665046884521796113-5767662033898429
Q ss_pred EEEEECC-EEEEEECCCC-------CCCCEEEEEECCCCCEEEEE-----EECCCCEEEEEEC---CC----------EE
Q ss_conf 9999399-2999987889-------98613788403999539999-----9179998999987---99----------29
Q 002591 805 LASVSED-SVRVWTVGSG-------SEGECVHELSCNGNKFHSCV-----FHPTYPSLLVIGC---YQ----------SL 858 (903)
Q Consensus 805 lasgs~d-~I~iwdl~s~-------~~~~~i~~~~~~~~~i~~i~-----~sp~g~~lit~s~---dg----------~I 858 (903)
..+.--| .|.-|++... .....+..+..|...=..+. ..|+|++|++... |+ .-
T Consensus 343 ytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pe~~ 422 (459)
T d1fwxa2 343 YTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPEND 422 (459)
T ss_dssp EEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEE
T ss_pred EEEEECCCEEEEEECCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 99861231699973440556644666773113543345788774576786788887899803434344667888987655
Q ss_pred EEEECCCCCE
Q ss_conf 9998899908
Q 002591 859 ELWNMSENKT 868 (903)
Q Consensus 859 ~iwdl~~~~~ 868 (903)
.++|+...+.
T Consensus 423 qlidisg~~m 432 (459)
T d1fwxa2 423 QLIDISGDKM 432 (459)
T ss_dssp EEEECSSSSC
T ss_pred EEEECCCCEE
T ss_conf 3797479815
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.77 E-value=0.00065 Score=36.82 Aligned_cols=50 Identities=8% Similarity=-0.069 Sum_probs=30.4
Q ss_pred ECCCCEEEEEECCCEEEEEECCCCCEEEECCCCC--CEEEEEEECCCC-EEEE
Q ss_conf 1799989999879929999889990889815789--778999936999-9999
Q 002591 843 HPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG--LIAALAVSTETG-YVAS 892 (903)
Q Consensus 843 sp~g~~lit~s~dg~I~iwdl~~~~~~~~~~h~~--~V~sl~~spdg~-~LaS 892 (903)
...+..++++..|+.++.||.++++.+....... .-.-+.|..+|+ ||+.
T Consensus 481 sTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav 533 (596)
T d1w6sa_ 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI 533 (596)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEEEE
T ss_conf 86699799978999599999999848369989999540776899899999999
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.73 E-value=0.00076 Score=36.40 Aligned_cols=58 Identities=10% Similarity=0.101 Sum_probs=29.5
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEE
Q ss_conf 929999889970899950799884899992899999999399-29999878899861378840
Q 002591 770 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 831 (903)
Q Consensus 770 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~ 831 (903)
|.|..+|+.+++.+............. ..-.+.++++++.| .++.+|.+++ +.+.++.
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~-l~TagglVf~G~~dg~l~A~Da~tG---e~lW~~~ 502 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGT-LYTKGGLVWYATLDGYLKALDNKDG---KELWNFK 502 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBC-EEETTTEEEEECTTSEEEEEETTTC---CEEEEEE
T ss_pred CCEEEECCCCCCEEEECCCCCCCCCCE-EEECCCEEEEECCCCEEEEEECCCC---CEEEEEE
T ss_conf 617885367784642767899987560-5966997999778996999999998---6878998
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.67 E-value=0.00094 Score=35.79 Aligned_cols=161 Identities=9% Similarity=-0.008 Sum_probs=73.5
Q ss_pred CCCEEEEEECCCCCEEEEE-ECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC-CC--EEEEECCCCC
Q ss_conf 9986999994899999999-589929999789992347841589976899999999989999489-93--9999489999
Q 002591 623 TSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-KT--VRVWDADNPG 698 (903)
Q Consensus 623 ~~~V~~i~fspdg~~Latg-s~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D-g~--I~IWdl~~~~ 698 (903)
...+.++++..-+..|+.+ ...+.|.+.+++.......+.........+++.|...+++..... +. |..-+++...
T Consensus 78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~ 157 (263)
T d1npea_ 78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157 (263)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred CCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCCCC
T ss_conf 26420799963688688842678979988058816777712566687279992566927995348997689996678997
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEE-CCCEEEEEEC
Q ss_conf 525884268886589996389990999980899299999589905688635810699914999899997-6992999988
Q 002591 699 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA-AENVVSILDA 777 (903)
Q Consensus 699 ~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~~~~~i~~sp~~~~ll~~s-~dg~I~i~D~ 777 (903)
........-.....|++.+.++.++++-...+.|...++....+...+.+......+...++.++.+. ..+.|...|.
T Consensus 158 -~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~ 236 (263)
T d1npea_ 158 -RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDL 236 (263)
T ss_dssp -CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred -CEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCEEEEEECCCCEEEEEEC
T ss_conf -2365530355553079950475899992899999999999997699988999868999999999999999997999989
Q ss_pred CCCEEEE
Q ss_conf 9970899
Q 002591 778 ETQACRL 784 (903)
Q Consensus 778 ~t~~~~~ 784 (903)
.+++.+.
T Consensus 237 ~~g~~~~ 243 (263)
T d1npea_ 237 AISKEMD 243 (263)
T ss_dssp TTTEEEE
T ss_pred CCCCCCE
T ss_conf 8995106
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.62 E-value=0.0011 Score=35.38 Aligned_cols=45 Identities=4% Similarity=-0.077 Sum_probs=25.2
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEE--EEEECCCC
Q ss_conf 7999899998799299998899908898157897789--99936999
Q 002591 844 PTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA--LAVSTETG 888 (903)
Q Consensus 844 p~g~~lit~s~dg~I~iwdl~~~~~~~~~~h~~~V~s--l~~spdg~ 888 (903)
..+..+++++.|+.++.||.++++.+........+.+ +.|..+|+
T Consensus 486 tagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~Gk 532 (573)
T d1kb0a2 486 TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR 532 (573)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred ECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCE
T ss_conf 86998999779991999999988685799898994516779998999
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.0018 Score=34.06 Aligned_cols=220 Identities=8% Similarity=-0.045 Sum_probs=99.0
Q ss_pred CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCC---CEEEEECCCCCCEEEEEECCCCC
Q ss_conf 299997899923478415899768999999999899994-89939999489999---52588426888658999638999
Q 002591 646 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPG---YSLRTFMGHSASVMSLDFHPNKD 721 (903)
Q Consensus 646 ~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs-~Dg~I~IWdl~~~~---~~~~~~~~h~~~V~si~fsp~~~ 721 (903)
.|+..++++......+ .....+..++|......|+... .++.|...+++... .....+......+..+++.+.++
T Consensus 11 ~I~~~~l~~~~~~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~ 89 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (266)
T ss_dssp SEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred EEEEEECCCCCCEEEE-CCCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCC
T ss_conf 1899989998526641-799855999998089999999997997999993578887614899848999854689864265
Q ss_pred EEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEEC--CCEEEEEECCCCEEEEEECCCCCCEEEE
Q ss_conf 0999980899299999589905688635---8106999149998999976--9929999889970899950799884899
Q 002591 722 DLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSV 796 (903)
Q Consensus 722 ~ll~sgs~Dg~I~iwDi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~s~--dg~I~i~D~~t~~~~~~l~~h~~~V~si 796 (903)
.++++....+.|.+.++....+...... ....+.+.|..+.++.+.. .+.|...++............-.....+
T Consensus 90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl 169 (266)
T d1ijqa1 90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 169 (266)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCCCEECCCCCCCCEEEEE
T ss_conf 28999548999985764895378887279988336999800394887126997302686368883441200453201699
Q ss_pred EECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEE
Q ss_conf 992899999999399--299998788998613788403999539999917999899998-7992999988999088
Q 002591 797 CWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTM 869 (903)
Q Consensus 797 ~~spdg~~lasgs~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s-~dg~I~iwdl~~~~~~ 869 (903)
++++.+..|+.+... .|...++.... ...+............+++. +.+|+... .++.|+..+..++...
T Consensus 170 ~iD~~~~~lYw~d~~~~~I~~~~~dG~~-~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~ 242 (266)
T d1ijqa1 170 TLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV 242 (266)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred EEECCCCEEEEECCCCCEEEEEECCCCC-EEEEEECCCCCCCCEEEEEE--CCEEEEEECCCCEEEEEECCCCCCE
T ss_conf 8613356999952896799999899997-79999389855664799998--9999999899996999999899615
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.36 E-value=0.0024 Score=33.19 Aligned_cols=246 Identities=11% Similarity=0.165 Sum_probs=136.4
Q ss_pred CCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEE
Q ss_conf 92999978999234784158997689999999998999948993999948999952588426888658999638999099
Q 002591 645 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLI 724 (903)
Q Consensus 645 g~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll 724 (903)
..|.|.|+.......+-.-. --+.-.+|..+.|+.-+ ..++.+||+++ +..++.+.- ...|.--.|..+. .|
T Consensus 45 ~~VvIidl~n~~~~~Rrpi~---AdsAIMhP~~~IiALra-g~~LQiFnlet-K~klks~~~-~e~VvfWkWis~~--~L 116 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHTM-TDDVTFWKWISLN--TV 116 (327)
T ss_dssp EEEEEEETTSTTSCEEEECC---CSEEEECSSSSEEEEEE-TTEEEEEETTT-TEEEEEEEC-SSCCCEEEESSSS--EE
T ss_pred CEEEEEECCCCCCCEECCCC---HHHHHCCCCCCEEEEEC-CCEEEEEEHHH-HHHHCEEEC-CCCCEEEEECCCC--EE
T ss_conf 43999988998763314436---16653088875799962-88689984468-221115876-8885799944798--89
Q ss_pred EEEECCCCEEEEECCCC-EEEEEEECC-------CEEEEEECCCCEEEEEEC-------CCEEEEEECCCCEEEEEECCC
Q ss_conf 99808992999995899-056886358-------106999149998999976-------992999988997089995079
Q 002591 725 CSCDGDGEIRYWSINNG-SCTRVFKGG-------TAQMRFQPHLGRYLAAAA-------ENVVSILDAETQACRLSLQGH 789 (903)
Q Consensus 725 ~sgs~Dg~I~iwDi~~~-~~~~~~~~~-------~~~i~~sp~~~~ll~~s~-------dg~I~i~D~~t~~~~~~l~~h 789 (903)
+... +..|+-|+++.. ...+.|..+ +...+.+++.++++..+- .|.+.+|..+... -..+++|
T Consensus 117 ~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGh 194 (327)
T d1utca2 117 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGH 194 (327)
T ss_dssp EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCS
T ss_pred EEEC-CCCEEEECCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEECCCC-CCCCCCE
T ss_conf 9991-8816997356999852662321012486389989899998899995713788305888899802286-7523203
Q ss_pred CCCEEEEEECCCC---CEEEEEEC---C-EEEEEECCCCCCC------CEEEEEEC---CCCCEEEEEEECCCCEEEEEE
Q ss_conf 9884899992899---99999939---9-2999987889986------13788403---999539999917999899998
Q 002591 790 TKPIDSVCWDPSG---ELLASVSE---D-SVRVWTVGSGSEG------ECVHELSC---NGNKFHSCVFHPTYPSLLVIG 853 (903)
Q Consensus 790 ~~~V~si~~spdg---~~lasgs~---d-~I~iwdl~s~~~~------~~i~~~~~---~~~~i~~i~~sp~g~~lit~s 853 (903)
......+...-+. .+++.+.. . .+.+.++...... +.+..+.. ...-..++..++....+++.+
T Consensus 195 aa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviT 274 (327)
T d1utca2 195 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT 274 (327)
T ss_dssp EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEE
T ss_pred EEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEE
T ss_conf 46568887079988730999998789874799998688755788875326887779634688477999643379999996
Q ss_pred CCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEE
Q ss_conf 7992999988999088-9815789778999936999999995698399
Q 002591 854 CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVK 900 (903)
Q Consensus 854 ~dg~I~iwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~ 900 (903)
..|.|++||+.++.++ .-.-....|...+-..+..-++....+|.|.
T Consensus 275 K~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 275 KYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEEEECCCCEEE
T ss_conf 675899997566628999404788448962678886089987897699
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.30 E-value=0.0028 Score=32.78 Aligned_cols=240 Identities=8% Similarity=0.034 Sum_probs=126.3
Q ss_pred CEEEEEECCCCCEEEEEEC-----CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC-------------
Q ss_conf 8699999489999999958-----9929999789992347841589976899999999989999489-------------
Q 002591 625 KVICCHFSSDGKLLATGGH-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD------------- 686 (903)
Q Consensus 625 ~V~~i~fspdg~~Latgs~-----Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D------------- 686 (903)
.+..+++||+++++|.+-. ...|+++|+.+++.+...... .....+.|.+|+..|+....+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCCCC-CCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 334258537898799995566672104677416764031442224-3236417857998999997626667654433345
Q ss_pred ---CCEEEEECCCCCCE-EEEECCC--CCCEEEEEECCCCCEEEEEEEC--CCC--EEEEECCCCE--------EEEEEE
Q ss_conf ---93999948999952-5884268--8865899963899909999808--992--9999958990--------568863
Q 002591 687 ---KTVRVWDADNPGYS-LRTFMGH--SASVMSLDFHPNKDDLICSCDG--DGE--IRYWSINNGS--------CTRVFK 748 (903)
Q Consensus 687 ---g~I~IWdl~~~~~~-~~~~~~h--~~~V~si~fsp~~~~ll~sgs~--Dg~--I~iwDi~~~~--------~~~~~~ 748 (903)
..|..|.+.+.... ...+... ...+..+..+.++..+++.... +.. +.+.++.... ....+.
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 284 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEEC
T ss_conf 78633899988988653100223235772577530268762456876436776479999517776455663101258304
Q ss_pred CCCEEEE-EECCCCEEEEEEC----CCEEEEEECCCCEE---EEEECCCCCCEEEEEECCCCCEE-EEEECC---EEEEE
Q ss_conf 5810699-9149998999976----99299998899708---99950799884899992899999-999399---29999
Q 002591 749 GGTAQMR-FQPHLGRYLAAAA----ENVVSILDAETQAC---RLSLQGHTKPIDSVCWDPSGELL-ASVSED---SVRVW 816 (903)
Q Consensus 749 ~~~~~i~-~sp~~~~ll~~s~----dg~I~i~D~~t~~~---~~~l~~h~~~V~si~~spdg~~l-asgs~d---~I~iw 816 (903)
....... +...+..++..+. ++.|...++..... ...+..+...+..-.+...+.+| +....+ .|+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~ 364 (430)
T d1qfma1 285 NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364 (430)
T ss_dssp SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCEEECCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEEECCEEEEEEECCCEEEEEEE
T ss_conf 65562687713773023245765655415873477876554158951367525556789779999999991887089999
Q ss_pred ECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECC----CEEEEEECCCCCE
Q ss_conf 878899861378840399953999991799989999879----9299998899908
Q 002591 817 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKT 868 (903)
Q Consensus 817 dl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s~d----g~I~iwdl~~~~~ 868 (903)
++..+. .........+.+..+...++...+...-.+ ..++.||+.+++.
T Consensus 365 ~~~~~~---~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 365 DLATGA---LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp ETTTCC---EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred ECCCCC---EEEECCCCCCEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCCCCC
T ss_conf 899995---88854888716864148988998999981899987699999999985
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.0041 Score=31.70 Aligned_cols=200 Identities=10% Similarity=-0.015 Sum_probs=121.3
Q ss_pred CCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCC----CEEEEECCCCCCEEEEEECCCCCEEEEE-ECCCCEEEEECC
Q ss_conf 999869999948999999995-8992999978999----2347841589976899999999989999-489939999489
Q 002591 622 STSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDAD 695 (903)
Q Consensus 622 H~~~V~~i~fspdg~~Latgs-~Dg~I~IWd~~t~----~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~I~IWdl~ 695 (903)
....+.+++|....+.|+-.. .++.|...+++.. .....+......+..+++...+..|+.+ ...+.|.+.+++
T Consensus 28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~ 107 (266)
T d1ijqa1 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (266)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEECC
T ss_conf 99855999998089999999997997999993578887614899848999854689864265289995489999857648
Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEEEEEEE-CCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEEC-CC
Q ss_conf 999525884268886589996389990999980-899299999589905688635---8106999149998999976-99
Q 002591 696 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA-EN 770 (903)
Q Consensus 696 ~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs-~Dg~I~iwDi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~s~-dg 770 (903)
. ......+.........++++|....++++.. ..+.|...++........... ....+++.+..+.++.+.. .+
T Consensus 108 g-~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~ 186 (266)
T d1ijqa1 108 G-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 186 (266)
T ss_dssp S-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred C-CEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCCCEECCCCCCCCEEEEEEEECCCCEEEEECCCCC
T ss_conf 9-537888727998833699980039488712699730268636888344120045320169986133569999528967
Q ss_pred EEEEEECCCCEEEEEECC--CCCCEEEEEECCCCCEEEEEE-CC-EEEEEECCCCCCC
Q ss_conf 299998899708999507--998848999928999999993-99-2999987889986
Q 002591 771 VVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEG 824 (903)
Q Consensus 771 ~I~i~D~~t~~~~~~l~~--h~~~V~si~~spdg~~lasgs-~d-~I~iwdl~s~~~~ 824 (903)
.|...++........... ......++++. +.+|+... .+ .|...+..++...
T Consensus 187 ~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~ 242 (266)
T d1ijqa1 187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV 242 (266)
T ss_dssp EEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred EEEEEECCCCCEEEEEECCCCCCCCEEEEEE--CCEEEEEECCCCEEEEEECCCCCCE
T ss_conf 9999989999779999389855664799998--9999999899996999999899615
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.02 E-value=0.0052 Score=31.00 Aligned_cols=80 Identities=9% Similarity=0.137 Sum_probs=43.0
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCC-CEEEEEEECCCC
Q ss_conf 929999889970899950799884899992899999999399-299998788998613788403999-539999917999
Q 002591 770 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN-KFHSCVFHPTYP 847 (903)
Q Consensus 770 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~-~i~~i~~sp~g~ 847 (903)
+.|.-||+.+++.+..+... .+..+-...-.+.+++.++.| .++.||..++ +.+..+..... .-.-+.|..+|+
T Consensus 438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tG---e~LW~~~l~~~~~~~P~ty~~dGk 513 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKG---EALWQFEAQSGIVAAPMTFELAGR 513 (560)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCEEEEECCCCEEEEECCCC-CCCCCCEEEECCCEEEEECCCCCEEEEECCCC---CEEEEEECCCCCCCCCEEEEECCE
T ss_conf 64688707788373102578-88877405987998999778981999999998---582799899995516779998999
Q ss_pred -EEEEEE
Q ss_conf -899998
Q 002591 848 -SLLVIG 853 (903)
Q Consensus 848 -~lit~s 853 (903)
+|++..
T Consensus 514 qyv~v~a 520 (560)
T d1kv9a2 514 QYVAIMA 520 (560)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
T ss_conf 9999991
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.00 E-value=0.0054 Score=30.89 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=33.6
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEE
Q ss_conf 929999889970899950799884899992899999999399-29999878899861378840
Q 002591 770 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 831 (903)
Q Consensus 770 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~ 831 (903)
|.|.-||..+++.+..... ..++.+-...-.+.+++.++.| .++.+|.+++ +.+.++.
T Consensus 453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TG---e~LW~~~ 511 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTG---DLLWKFK 511 (596)
T ss_dssp EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTC---CEEEEEE
T ss_pred CEEEEEECCCCCEECCCCC-CCCCCCCEEEECCCEEEEECCCCEEEEEECCCC---CEEEEEE
T ss_conf 5389980788856233278-888744146866997999789995999999998---4836998
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.36 E-value=0.015 Score=27.98 Aligned_cols=270 Identities=11% Similarity=0.068 Sum_probs=140.4
Q ss_pred CEEEEEECCCCCEEEEEECCC-----------CEEEEECCCCCEE--EEE-CCCCCCEEEEEECCCCCEEEEEECC-CCE
Q ss_conf 869999948999999995899-----------2999978999234--784-1589976899999999989999489-939
Q 002591 625 KVICCHFSSDGKLLATGGHDK-----------KAVLWHTDTLKSK--TNL-EEHSSLITDVRFSPSMPRLATSSFD-KTV 689 (903)
Q Consensus 625 ~V~~i~fspdg~~Latgs~Dg-----------~I~IWd~~t~~~~--~~l-~~h~~~V~~i~fspdg~~Lasgs~D-g~I 689 (903)
.+.......+|++++.|+.+. .+.+||..+..-. ... ..+........+.+++.+++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred CCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCE
T ss_conf 01789992599999998405766678877606899998888968666778987445256899946886898636888621
Q ss_pred EEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECC------CCEEEEECCCCEEEEEEEC--------------
Q ss_conf 99948999952588426888658999638999099998089------9299999589905688635--------------
Q 002591 690 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFKG-------------- 749 (903)
Q Consensus 690 ~IWdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~D------g~I~iwDi~~~~~~~~~~~-------------- 749 (903)
.+||..+..............-.+.+..+++. +++.++.+ ..+.+||..+.+....-..
T Consensus 101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 179 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 179 (387)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEEECCCC-EEEECCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCEE
T ss_conf 67567557442156566421013035531782-66521366333543205663488895511588764431134665136
Q ss_pred ---CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEC--C----CC--CCEEEEEEC-CCCCEEEEEECC------
Q ss_conf ---81069991499989999769929999889970899950--7----99--884899992-899999999399------
Q 002591 750 ---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--G----HT--KPIDSVCWD-PSGELLASVSED------ 811 (903)
Q Consensus 750 ---~~~~i~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~--~----h~--~~V~si~~s-pdg~~lasgs~d------ 811 (903)
....+...+++..++.+...+.+.+++..+........ . +. ..-.++.+. .++++++.++..
T Consensus 180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~ 259 (387)
T d1k3ia3 180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 259 (387)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred ECCCEEEEEEECCCCEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 50422699970798778746867747814866671731665566766576322263788613588247887536788775
Q ss_pred ---EEEEEECCCCCCCCEEEEEE---CCCCCEEEEEEECCCCEEEEEECC-----------CEEEEEECCCCCEEEECCC
Q ss_conf ---29999878899861378840---399953999991799989999879-----------9299998899908898157
Q 002591 812 ---SVRVWTVGSGSEGECVHELS---CNGNKFHSCVFHPTYPSLLVIGCY-----------QSLELWNMSENKTMTLTAH 874 (903)
Q Consensus 812 ---~I~iwdl~s~~~~~~i~~~~---~~~~~i~~i~~sp~g~~lit~s~d-----------g~I~iwdl~~~~~~~~~~h 874 (903)
...++++............. .......+.+..++++.+++++.+ ..+.+||..+.+-..+...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~ 339 (387)
T d1k3ia3 260 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 339 (387)
T ss_dssp CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred CCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCEECEEEEEECCCCEEEECCCC
T ss_conf 21000001111135678840603665665434335660587499988845676688994701079897999918878899
Q ss_pred C--CC-EEEEEEECCCCEEEEEEC
Q ss_conf 8--97-789999369999999956
Q 002591 875 E--GL-IAALAVSTETGYVASASH 895 (903)
Q Consensus 875 ~--~~-V~sl~~spdg~~LaSgs~ 895 (903)
. .. -....+.+|+++++.|+.
T Consensus 340 ~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 340 SIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCCEEEEEECCCCEEEEEECC
T ss_conf 975531279999889999999698
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.32 E-value=0.016 Score=27.84 Aligned_cols=226 Identities=10% Similarity=0.143 Sum_probs=142.2
Q ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCC
Q ss_conf 99994899999999589929999789992347841589976899999999989999489939999489999525884268
Q 002591 628 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 707 (903)
Q Consensus 628 ~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWdl~~~~~~~~~~~~h 707 (903)
+.-.+|..+.||.-+ ..++.+||+++...++.+.-.. .|.--.|-.+. .|+..+ +..|+-|+++....+.+.+..|
T Consensus 67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~ 142 (327)
T d1utca2 67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 142 (327)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred HHHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEECCC-CCEEEEECCCC-EEEEEC-CCCEEEECCCCCCCCHHHHHHC
T ss_conf 653088875799962-8868998446822111587688-85799944798-899991-8816997356999852662321
Q ss_pred C----CCEEEEEECCCCCEEEEEEE------CCCCEEEEECCCCEEEEEEECCCEEEEEE-CCC----CEEEEEEC----
Q ss_conf 8----86589996389990999980------89929999958990568863581069991-499----98999976----
Q 002591 708 S----ASVMSLDFHPNKDDLICSCD------GDGEIRYWSINNGSCTRVFKGGTAQMRFQ-PHL----GRYLAAAA---- 768 (903)
Q Consensus 708 ~----~~V~si~fsp~~~~ll~sgs------~Dg~I~iwDi~~~~~~~~~~~~~~~i~~s-p~~----~~ll~~s~---- 768 (903)
. ..|.....+++.+.++++|- -.|.+.+|..+.. ....++++..+..-. .++ ..+++-+.
T Consensus 143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 221 (327)
T d1utca2 143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 221 (327)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred CCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEECCC-CCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCC
T ss_conf 01248638998989999889999571378830588889980228-67523203465688870799887309999987898
Q ss_pred CCEEEEEECCCC--------EEEEEECC----CCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCC
Q ss_conf 992999988997--------08999507----99884899992899999999399-299998788998613788403999
Q 002591 769 ENVVSILDAETQ--------ACRLSLQG----HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 835 (903)
Q Consensus 769 dg~I~i~D~~t~--------~~~~~l~~----h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~ 835 (903)
.+.++|.++... +....+.. ..+--.++..++...+++..+.. .+.+||+.++ .++..-.....
T Consensus 222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg---t~i~~nRIs~~ 298 (327)
T d1utca2 222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGE 298 (327)
T ss_dssp EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred CCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC---CEEEEEECCCC
T ss_conf 747999986887557888753268877796346884779996433799999966758999975666---28999404788
Q ss_pred CEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 53999991799989999879929999
Q 002591 836 KFHSCVFHPTYPSLLVIGCYQSLELW 861 (903)
Q Consensus 836 ~i~~i~~sp~g~~lit~s~dg~I~iw 861 (903)
.+...+-..+..-+++...+|.|...
T Consensus 299 ~iF~~a~~~~~~Gi~~VNr~GqVl~v 324 (327)
T d1utca2 299 TIFVTAPHEATAGIIGVNRKGQVLSV 324 (327)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred CEEEECCCCCCCEEEEECCCCEEEEE
T ss_conf 44896267888608998789769999
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.15 E-value=0.02 Score=27.27 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=36.9
Q ss_pred EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCE--EEEEEECCCC-
Q ss_conf 2999987889986137884039995399999179998999987992999988999088981578977--8999936999-
Q 002591 812 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLI--AALAVSTETG- 888 (903)
Q Consensus 812 ~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~~~~~h~~~V--~sl~~spdg~- 888 (903)
.|.-+|+.++ +.+...... .++..-.....+..+++++.|+.++.||.++++++........+ .-+.|..+|+
T Consensus 467 ~l~AiD~~TG---~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 467 SLRAMDPVSG---KVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp EEEEECTTTC---CEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred EEEEECCCCC---CEEEECCCC-CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf 5999807899---587326779-997450169769869996799969999999986867988999962167799989999
Q ss_pred EEEE
Q ss_conf 9999
Q 002591 889 YVAS 892 (903)
Q Consensus 889 ~LaS 892 (903)
||+.
T Consensus 543 Yv~i 546 (582)
T d1flga_ 543 YLGV 546 (582)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9999
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.01 E-value=0.023 Score=26.87 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=47.3
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCC-EEEEEEECCC
Q ss_conf 9929999889970899950799884899992899999999399-2999987889986137884039995-3999991799
Q 002591 769 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK-FHSCVFHPTY 846 (903)
Q Consensus 769 dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~-i~~i~~sp~g 846 (903)
.|.|.-+|+.+++.+..+.... ++..-.....+.++++++.| .++.||.+++ +.+.++...... -.-+.|..+|
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TG---e~LW~~~~~~~~~~~P~ty~~~G 540 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSG---KELWKFQTGSGIVSPPITWEQDG 540 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETT
T ss_pred CCEEEEECCCCCCEEEECCCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCC---CEEEEEECCCCCCCCCEEEEECC
T ss_conf 7759998078995873267799-9745016976986999679996999999998---68679889999621677999899
Q ss_pred C-EEEEE
Q ss_conf 9-89999
Q 002591 847 P-SLLVI 852 (903)
Q Consensus 847 ~-~lit~ 852 (903)
+ |+++.
T Consensus 541 ~qYv~i~ 547 (582)
T d1flga_ 541 EQYLGVT 547 (582)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
T ss_conf 9999999
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=95.87 E-value=0.026 Score=26.46 Aligned_cols=80 Identities=13% Similarity=0.121 Sum_probs=44.9
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCC-EEEEEEECCCC
Q ss_conf 929999889970899950799884899992899999999399-2999987889986137884039995-39999917999
Q 002591 770 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK-FHSCVFHPTYP 847 (903)
Q Consensus 770 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~-i~~i~~sp~g~ 847 (903)
|.+.-||+.+++.+..+.... +...-...-.+.++++++.| .++.||.+++ +.+.++...... -.-+.|..+|+
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TG---e~LW~~~~~~~~~~~P~ty~~~Gk 532 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATG---EKLWEAPTGTGVVAAPSTYMVDGR 532 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCEEEECCCCCCEEEEECCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCC---CEEEEEECCCCCCCCCEEEEECCE
T ss_conf 617875787786670516889-8877607986998999779991999999988---685799898994516779998999
Q ss_pred -EEEEEE
Q ss_conf -899998
Q 002591 848 -SLLVIG 853 (903)
Q Consensus 848 -~lit~s 853 (903)
||++..
T Consensus 533 QYv~v~~ 539 (573)
T d1kb0a2 533 QYVSVAV 539 (573)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
T ss_conf 9999993
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.84 E-value=0.027 Score=26.38 Aligned_cols=221 Identities=8% Similarity=0.026 Sum_probs=106.6
Q ss_pred CCCCEEEEEECCCCCEEEEEE-CC----CCEEEEECCCCCCEEE-EECCCCCCEEEEEECCCCCEEEEEEEC--------
Q ss_conf 899768999999999899994-89----9399994899995258-842688865899963899909999808--------
Q 002591 664 HSSLITDVRFSPSMPRLATSS-FD----KTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDG-------- 729 (903)
Q Consensus 664 h~~~V~~i~fspdg~~Lasgs-~D----g~I~IWdl~~~~~~~~-~~~~h~~~V~si~fsp~~~~ll~sgs~-------- 729 (903)
+.-.+..++++|++++++.+- .+ ..|+++|+.+ +..+. .+.. .....+.|.+++..++++.-.
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~t-g~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~ 199 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG-AKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT-TEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred CCCEECCEEECCCCCEEEEEECCCCCCHHEEEEECCCC-CEECCCCCCC--CCCCCEEECCCCCEEEEEEECCCCCCCCC
T ss_conf 44133425853789879999556667210467741676-4031442224--32364178579989999976266676544
Q ss_pred -------CCCEEEEECCCCEE--EEEEECC-----CEEEEEECCCCEEEEEEC---CC--EEEEEECCCCE--------E
Q ss_conf -------99299999589905--6886358-----106999149998999976---99--29999889970--------8
Q 002591 730 -------DGEIRYWSINNGSC--TRVFKGG-----TAQMRFQPHLGRYLAAAA---EN--VVSILDAETQA--------C 782 (903)
Q Consensus 730 -------Dg~I~iwDi~~~~~--~~~~~~~-----~~~i~~sp~~~~ll~~s~---dg--~I~i~D~~t~~--------~ 782 (903)
...|.+|.+.+... ...+... ...+..+.++.+++.... .. .+.+.|..... .
T Consensus 200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 279 (430)
T d1qfma1 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (430)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCE
T ss_conf 33345786338999889886531002232357725775302687624568764367764799995177764556631012
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECC----EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEE-CCC-
Q ss_conf 99950799884899992899999999399----299998788998613788403999539999917999899998-799-
Q 002591 783 RLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQ- 856 (903)
Q Consensus 783 ~~~l~~h~~~V~si~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s-~dg- 856 (903)
...+......+..+.. .++.+++....+ .|...++...........+..+...+..-.+...+.+|++.. .++
T Consensus 280 ~~~~~~~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~ 358 (430)
T d1qfma1 280 VKLIDNFEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK 358 (430)
T ss_dssp EEEECSSSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred EEEECCCCCCEEEEEC-CCCEEECCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEEECCEEEEEEECCCE
T ss_conf 5830465562687713-773023245765655415873477876554158951367525556789779999999991887
Q ss_pred -EEEEEECCCCCEEEE-CCCCCCEEEEEEECCCC
Q ss_conf -299998899908898-15789778999936999
Q 002591 857 -SLELWNMSENKTMTL-TAHEGLIAALAVSTETG 888 (903)
Q Consensus 857 -~I~iwdl~~~~~~~~-~~h~~~V~sl~~spdg~ 888 (903)
.|+++++.++....+ ....+.|..+...++..
T Consensus 359 ~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~ 392 (430)
T d1qfma1 359 NTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT 392 (430)
T ss_dssp EEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred EEEEEEECCCCCEEEECCCCCCEEEECCCCCCCC
T ss_conf 0899998999958885488871686414898899
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.80 E-value=0.028 Score=26.28 Aligned_cols=93 Identities=9% Similarity=0.039 Sum_probs=54.0
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEE
Q ss_conf 86999994899999999589929999789992347841589976899999999989999489939999489999525884
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 704 (903)
Q Consensus 625 ~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWdl~~~~~~~~~~ 704 (903)
.|..++|+.+ .|++.. ++.+..++............-...+..+.++|. .++....++.+.++++.+. ......
T Consensus 88 ~v~~vafs~d--~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~-~~~~~~ 161 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK-STKQLA 161 (381)
T ss_dssp TEEEEEEETT--EEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC-CEEEEE
T ss_pred CEEEEEEECC--EEEEEE-CCCEEEEEEECCCCCCCCCCCCCCCCCEECCCC--EEEEEECCCCEEEEEECCC-CCCCCC
T ss_conf 8689986189--899995-897899985100145446554556111021886--0699965897789994158-644444
Q ss_pred CC-----CCCCEEEEEECCCCCEE
Q ss_conf 26-----88865899963899909
Q 002591 705 MG-----HSASVMSLDFHPNKDDL 723 (903)
Q Consensus 705 ~~-----h~~~V~si~fsp~~~~l 723 (903)
.+ -...+.+++|++.+..+
T Consensus 162 ~~v~~~~~~~~~~~v~ws~kgkq~ 185 (381)
T d1xipa_ 162 QNVTSFDVTNSQLAVLLKDRSFQS 185 (381)
T ss_dssp ESEEEEEECSSEEEEEETTSCEEE
T ss_pred CCCCEEEECCCCEEEEEECCCEEE
T ss_conf 775238733892699996896899
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.49 E-value=0.037 Score=25.56 Aligned_cols=186 Identities=16% Similarity=0.218 Sum_probs=105.7
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEC------CCCCEEEEEEC--C--CCEEEEECCCCCCEEE
Q ss_conf 899999999589929999789992347841589976899999------99998999948--9--9399994899995258
Q 002591 633 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS------PSMPRLATSSF--D--KTVRVWDADNPGYSLR 702 (903)
Q Consensus 633 pdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fs------pdg~~Lasgs~--D--g~I~IWdl~~~~~~~~ 702 (903)
|+..+++....++-|++||+. ++.+..+.. +.++.|..- .....|++++. + ..|.+|.+......+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred CCCCEEEEECCCCCEEEECCC-CCEEEECCC--CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCC
T ss_conf 672389997586887999189-968774036--77673243366435775068999957867630599998447666311
Q ss_pred EECCC-------CCCEEEEEE--CCC-CCEEEEEEECCCCEEEEECCC---C----EEEEEEE--CCCEEEEEECCCCEE
Q ss_conf 84268-------886589996--389-990999980899299999589---9----0568863--581069991499989
Q 002591 703 TFMGH-------SASVMSLDF--HPN-KDDLICSCDGDGEIRYWSINN---G----SCTRVFK--GGTAQMRFQPHLGRY 763 (903)
Q Consensus 703 ~~~~h-------~~~V~si~f--sp~-~~~ll~sgs~Dg~I~iwDi~~---~----~~~~~~~--~~~~~i~~sp~~~~l 763 (903)
.+... ...++.+|+ ++. +..++++...+|.+..|.+.. + +.++.|. .....|.+....+.+
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSL 194 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCE
T ss_conf 24665543345667656999774277780799997588608999997478972555763035888862169981788949
Q ss_pred EEEECCCEEEEEECCC-----CEEEEEECC--CCCCEEEEEECC--CCC-EEEEEECC--EEEEEECCCC
Q ss_conf 9997699299998899-----708999507--998848999928--999-99999399--2999987889
Q 002591 764 LAAAAENVVSILDAET-----QACRLSLQG--HTKPIDSVCWDP--SGE-LLASVSED--SVRVWTVGSG 821 (903)
Q Consensus 764 l~~s~dg~I~i~D~~t-----~~~~~~l~~--h~~~V~si~~sp--dg~-~lasgs~d--~I~iwdl~s~ 821 (903)
+++-.+..|..++.+- ...+....+ ....+..|+.-. ++. ||++.+.+ +..+||....
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEECCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 9954755238888045777662243113675445785453799847998599997379976999956788
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=91.11 E-value=0.21 Score=20.68 Aligned_cols=140 Identities=11% Similarity=0.143 Sum_probs=70.2
Q ss_pred CEEEEECC-CCCEEEEECCC-------CCCEEEEEE--CCC-CC-EEEEEECCCCEEEEECCCC--C----CEEEEECCC
Q ss_conf 29999789-99234784158-------997689999--999-99-8999948993999948999--9----525884268
Q 002591 646 KAVLWHTD-TLKSKTNLEEH-------SSLITDVRF--SPS-MP-RLATSSFDKTVRVWDADNP--G----YSLRTFMGH 707 (903)
Q Consensus 646 ~I~IWd~~-t~~~~~~l~~h-------~~~V~~i~f--spd-g~-~Lasgs~Dg~I~IWdl~~~--~----~~~~~~~~h 707 (903)
.|.+|.+. ....+..+... ...+..+|+ ++. +. ++++...+|.+..|.+... + ..++.+. .
T Consensus 100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~ 178 (353)
T d1h6la_ 100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-M 178 (353)
T ss_dssp EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-C
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCC-C
T ss_conf 599998447666311246655433456676569997742777807999975886089999974789725557630358-8
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCCEEEEECCCC-----EEEEE-----EECCCEEEEEE--CC-CCEEEEEEC-CCEEE
Q ss_conf 8865899963899909999808992999995899-----05688-----63581069991--49-998999976-99299
Q 002591 708 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-----SCTRV-----FKGGTAQMRFQ--PH-LGRYLAAAA-ENVVS 773 (903)
Q Consensus 708 ~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~-----~~~~~-----~~~~~~~i~~s--p~-~~~ll~~s~-dg~I~ 773 (903)
...+..+.+......++ .+-++..|+.++.... ..+.. +...+..+++- .+ .+++++++. ++...
T Consensus 179 ~~q~EGCVvDde~~~Ly-isEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~ 257 (353)
T d1h6la_ 179 NSQTEGMAADDEYGSLY-IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYA 257 (353)
T ss_dssp SSCEEEEEEETTTTEEE-EEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred CCCCCEEEEECCCCCEE-EECCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEE
T ss_conf 88621699817889499-95475523888804577766224311367544578545379984799859999737997699
Q ss_pred EEECCCC-EEEEEEC
Q ss_conf 9988997-0899950
Q 002591 774 ILDAETQ-ACRLSLQ 787 (903)
Q Consensus 774 i~D~~t~-~~~~~l~ 787 (903)
+||.... ..+..|.
T Consensus 258 vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 258 IYERQGQNKYVADFQ 272 (353)
T ss_dssp EEESSTTCCEEEEEE
T ss_pred EEECCCCCCCCCEEE
T ss_conf 995678865332599
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=91.08 E-value=0.21 Score=20.66 Aligned_cols=222 Identities=13% Similarity=-0.004 Sum_probs=88.5
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEE
Q ss_conf 86999994899999999589929999789992347841589976899999999989999489939999489999525884
Q 002591 625 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 704 (903)
Q Consensus 625 ~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWdl~~~~~~~~~~ 704 (903)
.|..|+.-.. ..++ -. ||.|+.|-....-.+-.-......|..|..-... .++ - .|+.+..|.....+.... .
T Consensus 27 ~i~~va~G~~-h~~a-l~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~-~~a-l-~dg~v~~wG~~~~gq~~~-~ 99 (273)
T d1jtdb_ 27 GVDAIAGGYF-HGLA-LK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLA-L-KDGEVIAWGGNEDGQTTV-P 99 (273)
T ss_dssp SEEEEEECSS-EEEE-EE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSE-EEE-E-ETTEEEEEECCTTSTTCC-C
T ss_pred CCEEEECCCC-EEEE-EE-CCEEEEEECCCCCCEEEEECCCCCCEEEECCCCC-EEE-E-EEEEEECCCCCCCEEECC-C
T ss_conf 8599985679-8999-98-9989998589998600200234664599659972-551-4-320130268873001022-3
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEE
Q ss_conf 26888658999638999099998089929999958990568863581069991499989999769929999889970899
Q 002591 705 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL 784 (903)
Q Consensus 705 ~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~~~~~i~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~ 784 (903)
......+..+.... ...+ .. .|+.+..|.................+.........++...++.++.|.........
T Consensus 100 ~~~~~~~~~i~~~~--~~~~-~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~G~~~~g~~~ 175 (273)
T d1jtdb_ 100 AEARSGVDAIAAGA--WASY-AL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTT 175 (273)
T ss_dssp GGGGSSCCEEEEET--TEEE-EE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEETTEEEEEECCTTSTTS
T ss_pred CCCCCCEEEEEEEC--CCCC-CC-CCCCCEECCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCC
T ss_conf 33442014786301--1111-11-23320000127988343403577317887503225645236641675213578655
Q ss_pred EECCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 95079988489999289999999939929999878899861378840399953999991799989999879929999889
Q 002591 785 SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 864 (903)
Q Consensus 785 ~l~~h~~~V~si~~spdg~~lasgs~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~ 864 (903)
........|..|+... ...+...++.|+.|=......... ... ....+..++... .+.++. .|+.|+.|-..
T Consensus 176 ~~~~~~~~v~~Is~G~--~h~~~l~dG~v~~WG~n~~Gql~~--~~~-~~~~v~~I~~G~--~~~~~l-~~g~v~~WG~~ 247 (273)
T d1jtdb_ 176 VPAEAQSGVDDVAGGI--FHSLALKDGKVIAWGDNRYKQTTV--PTE-ALSGVSAIASGE--WYSLAL-KNGKVIAWGSS 247 (273)
T ss_dssp CCGGGSSSEEEEEECS--SEEEEEETTEEEEEECCTTSTTCC--CGG-GGSSCCEEEECS--SCEEEE-ETTEEEEESTT
T ss_pred CCCCCCCCCCCEECCC--EEEEEEECCCEEECCCCCCCCCCC--CCC-CCCCCEEEEECC--CEEEEE-ECCEEEEECCC
T ss_conf 3332467741110302--036788568489837999896078--705-789958999590--569999-89999997899
Q ss_pred C
Q ss_conf 9
Q 002591 865 E 865 (903)
Q Consensus 865 ~ 865 (903)
.
T Consensus 248 ~ 248 (273)
T d1jtdb_ 248 R 248 (273)
T ss_dssp C
T ss_pred C
T ss_conf 7
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=90.69 E-value=0.23 Score=20.43 Aligned_cols=28 Identities=7% Similarity=0.139 Sum_probs=11.1
Q ss_pred CEEEEEECCCCEEEEEEC-CCEEEEEECC
Q ss_conf 106999149998999976-9929999889
Q 002591 751 TAQMRFQPHLGRYLAAAA-ENVVSILDAE 778 (903)
Q Consensus 751 ~~~i~~sp~~~~ll~~s~-dg~I~i~D~~ 778 (903)
.+.++++++++.++++.. .+.|++|++.
T Consensus 208 pNGI~~s~d~~~lyVa~t~~~~i~~y~~~ 236 (340)
T d1v04a_ 208 ANGINISPDGKYVYIAELLAHKIHVYEKH 236 (340)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CCEEEECCCCCEEEEEECCCCEEEEEEEC
T ss_conf 64348889999999996788939999968
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.39 E-value=0.29 Score=19.76 Aligned_cols=221 Identities=10% Similarity=0.006 Sum_probs=114.9
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEE-CCCCCEEEEEE------CCCCEEEEECCCCCCEEEEECC
Q ss_conf 9999999958992999978999234784158997689999-99999899994------8993999948999952588426
Q 002591 634 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-SPSMPRLATSS------FDKTVRVWDADNPGYSLRTFMG 706 (903)
Q Consensus 634 dg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~f-spdg~~Lasgs------~Dg~I~IWdl~~~~~~~~~~~~ 706 (903)
+.++|+++...|.|.++-+..++.++.-+. +|..... .+.-.++...- .-..|.+.++..+++..+.-..
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLtke---PI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp 101 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLNRE---PINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV 101 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECCSS---CCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred CCCEEEEEECCCEEEEEEEECCEEEEEECC---CCCCCCCCCCCCCEEEEEEEHHCCCCEEEEEEECCCCCCEEEEECCC
T ss_conf 985899983266688999968878997416---66676888667646889760124700024898705888802473377
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEEC--CCE--EEEEECCCCEE
Q ss_conf 88865899963899909999808992999995899056886358106999149998999976--992--99998899708
Q 002591 707 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA--ENV--VSILDAETQAC 782 (903)
Q Consensus 707 h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~~~~~i~~sp~~~~ll~~s~--dg~--I~i~D~~t~~~ 782 (903)
..-.|.++++. +..++++|+....+.+|-++.++..+....+.....-.-.+++++-.+- .+. ..+-|+.++..
T Consensus 102 k~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l 179 (313)
T d2hu7a1 102 KPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL 179 (313)
T ss_dssp CSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred CEEEEEEEEEC--CCEEEEECCCCCCEEEEEEECCCEEEECCCCCCCEEEECCCCEEEEEEEECCCCCEEEEEECCCCCE
T ss_conf 40799886526--8338996556783379998289554300389940477525776888766459852589984366977
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECC----EEEEEECCCCCCCCEEEEEEC------CCCCEEEEEEECCCCEEEEE
Q ss_conf 99950799884899992899999999399----299998788998613788403------99953999991799989999
Q 002591 783 RLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSC------NGNKFHSCVFHPTYPSLLVI 852 (903)
Q Consensus 783 ~~~l~~h~~~V~si~~spdg~~lasgs~d----~I~iwdl~s~~~~~~i~~~~~------~~~~i~~i~~sp~g~~lit~ 852 (903)
..+....+.++...+.+..+. ++.-+. ....+|+++++- ...++.. ....|.-+-+.|+++.++++
T Consensus 180 -ri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~y--erve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iia 255 (313)
T d2hu7a1 180 -RVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSV--EDLELPSKDFSSYRPTAITWLGYLPDGRLAVVA 255 (313)
T ss_dssp -EEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCE--EECCCSSCHHHHHCCSEEEEEEECTTSCEEEEE
T ss_pred -EEECCCCCCCCCEEECCCCEE-EECCCCCCCEEEEEEECCCCCE--EEEECCCCCCEEECCEEEEEEEECCCCCEEEEE
T ss_conf -985478884114057368655-4044777715799994566935--552157444203221377741137877279998
Q ss_pred ECCCEEEEEEC
Q ss_conf 87992999988
Q 002591 853 GCYQSLELWNM 863 (903)
Q Consensus 853 s~dg~I~iwdl 863 (903)
-.||.-.+|.-
T Consensus 256 krdG~s~lF~n 266 (313)
T d2hu7a1 256 RREGRSAVFID 266 (313)
T ss_dssp EETTEEEEEET
T ss_pred ECCCCHHEEEC
T ss_conf 20770222456
|