Citrus Sinensis ID: 002595

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900---
MASKASPSASPNRSEPLKSSSLTKTENGTLTRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDGYASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSEEEVIEEEEKKDFVDSEDYILRSPSEVKARYEILSKEESAVGGSNNGNDEHTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSSDGAGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHKHAKSSSSGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEASGSKKEEGGPSSGRAKKLA
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEEcccccEEEEcccccccccccHHccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHcccccccccccHHHcccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccHHHHHHcccEEEEEEEcccccccccccccccccEEEEcccccccHHHHHHHHHHHHHcccEEEEEEccccEEEccccccHHHHHccccccccEEEEEEEccEEEEEEEEccccccccEEEEccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccHHccccccccccccccccccccccccEEEEccccccccEEccccccccccccccEEEEEEcccccccccccEEcEEEEEEEccccEEEEEcccHHHHHHHHHHHccccHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHEEEccccccccccccccccccccccccccccccccHHHHHEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccHHHHccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHcccHcccccccHHHHHccccccccccccccccccccHHHHHHcccEEEEEccccccccccHHHHHHccccccccEEccccccccccccccccccccEEHHcccccccccccccccEEccccccccccccHHcccccccHHHHHccccccccccccccccccccccccHHHHcccEEEEEEEcccccccEEEEccccccccEEEEEccEEEcHHHHHHcccEEEcccccEEEEccccEEEEcEccccEEEEEEcccccccEEEEEEEccccEEEEEEccccccccEEEEEcccccccccccccccccccccccccccccccccHcc
maskaspsaspnrseplksssltktengtltRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLErrnnqtinthGSVDLLTKRQREALgvqngidvssgdrdshisqedgyastavygssnptkniirpiklndnkrlppyttwifldrnqrmtedqsvMSRRRIyydqnggealicsdseeevieeeekkdfvdsedyilrspsEVKARYEILSKeesavggsnngndehtmNNFLVKDLEAALDSFDNLFCRRCLvfdcrlhgcsqdlvfpaekqplwyhldegnvpcgphcyrsvlksernatacsplngdikekfisssdgagaqtssrkkfsgparrvkshqsesassnaknlsessdsevgqrqdtafthhsspsksklvgkvgickrkSKRVAERALVCKQKKQKkmaafdldsvasggvlpsdmklrstsrkenedanssshkhakssssgktrkkeMQIQDSRNLMHvrvplgssqeivsnppaistndslrkdEFVAENMckqelsdeKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTcsenklfcqaGDAATSLLEgyskfdfngttgnnevRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRIterkdqpcrqynpcgcqtacgkqcpcllngtccekycgcpkscknrfrgchcaksqcrsrqcpcfaadrecdpdvcrncwiscgdgslgvpdqkgdnyeCRNMKLLLKQQQRVLlgrsdvsgwgAFLKnsvgkheylgeYTGELISHreadkrgkiydrenssflfnlndqfvldayrkgdklkfanhspdpncyAKVIMVAGDHRVGIFAKERISAGEELfydyryepdrapawarkpeasgskkeeggpssgrakkla
maskaspsaspnrseplksssltktengtltRKEILSVIDCLKNQVAADHfvsvqrrveknrqkligvtnhlyrlslerrnnqtinthgsvDLLTKRQREALGVqngidvssgdrdsHISQEDGyastavygssnptkniirpiklndnkrlppyttwifldrnqrmtedqsvmsRRRIYYDQNGGEALICSDSEEEVIEEeekkdfvdsedyilrspseVKARYEILSKeesavggsnngnDEHTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFisssdgagaqtssrkkfsgparrvkshqsesassnaknlsessdseVGQRQDTafthhsspsksklvgkvgickrkskrvaeralvckqkkqkkmaafdldsvasggvlpsdmklrstsrkenedanssshkhakssssgktrkkeMQIQDSRNLMHVRVPLgssqeivsnppaistndslRKDEFVAENMCkqelsdekswKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSkfdfngttgnnevrrrsrylrrrgrvrrlkytwksaayhsirkriterkdqpcRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLkfanhspdpnCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPawarkpeasgskkeeggpssgrakkla
MASKASPSASPNRSEPLKSSSLTKTENGTLTRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDGYASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSeeevieeeeKKDFVDSEDYILRSPSEVKARYEILSKEESAVGGSNNGNDEHTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSSDGAGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANssshkhakssssGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVrrrsrylrrrgrvrrLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMklllkqqqRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARkpeasgskkeeggpssgRAKKLA
******************************TRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLL********************************************NIIRPIKLNDNKRLPPYTTWIFLDRN************RRIYYDQNGGEALIC********************************************************NNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKS**************************************************************************************KVGICK********RALVC*****************************************************************************************************************SWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFN************************KYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYE********************************
***********************************LSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYR*********************************************S*EDGYASTAV****NPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALIC**************DFVDSEDYILRSPSEVKARYEI***********************LVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQD**********************PHCYRS*********************************************************************************************************************************************************************************************************************************TIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCS****************************************************************ITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWAR***********************
************************TENGTLTRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGID***********QEDGYASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDS*************VDSEDYILRSPSEVKARYEILSKEESAVGGSNNGNDEHTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISS***************************************************************VGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDM***********************************IQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGC***********CPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPA**************************
******************************TRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQ******SVDLLTKR*REALGVQNGIDV*****DSHISQEDGYASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSEEEVIEEEEKKDFVDSEDYILRSPSEVKARYEILSKEE***************NNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKS*************************************************************************************************************************************************************************************************************************KSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSEN********************************RRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARK**********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASKASPSASPNRSEPLKSSSLTKTENGTLTRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDGYASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSEEEVIEEEEKKDFVDSEDYILRSPSEVKARYEILSKEESAVGGSNNGNDEHTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSSDGAGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHKHAKSSSSGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEASGSKKEEGGPSSGRAKKLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query903 2.2.26 [Sep-21-2011]
P93831902 Histone-lysine N-methyltr yes no 0.954 0.955 0.626 0.0
Q8S4P6931 Histone-lysine N-methyltr N/A no 0.937 0.909 0.591 0.0
Q8S4P4895 Histone-lysine N-methyltr N/A no 0.892 0.900 0.473 0.0
Q9ZSM8856 Histone-lysine N-methyltr no no 0.398 0.420 0.689 1e-149
Q8S4P5894 Histone-lysine N-methyltr N/A no 0.437 0.441 0.638 1e-144
O65312689 Histone-lysine N-methyltr no no 0.364 0.477 0.505 1e-100
A7E2Z2747 Histone-lysine N-methyltr yes no 0.328 0.397 0.434 9e-68
Q92800747 Histone-lysine N-methyltr yes no 0.328 0.397 0.428 1e-67
P70351747 Histone-lysine N-methyltr yes no 0.328 0.397 0.426 3e-67
Q5RDS6747 Histone-lysine N-methyltr yes no 0.328 0.397 0.428 5e-67
>sp|P93831|CLF_ARATH Histone-lysine N-methyltransferase CLF OS=Arabidopsis thaliana GN=CLF PE=1 SV=2 Back     alignment and function desciption
 Score = 1053 bits (2723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/919 (62%), Positives = 670/919 (72%), Gaps = 57/919 (6%)

Query: 13  RSEPLKSSSLTKTENGTLTRKEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHL 72
           RSEP K S     E      KE+  VI+ LK ++AAD  +S+++R+++N++ L  +T   
Sbjct: 13  RSEPPKDSP---AEERGPASKEVSEVIESLKKKLAADRCISIKKRIDENKKNLFAITQSF 69

Query: 73  YRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDGYASTA-VY 131
            R S+ER  +         DLL KRQR++ G+++GID S+ +R      EDG AS+  V 
Sbjct: 70  MRSSMERGGS----CKDGSDLLVKRQRDSPGMKSGIDESNNNR----YVEDGPASSGMVQ 121

Query: 132 GSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALIC 191
           GSS P K  +RPIK+ D KRL PYTTW+FLDRNQRMTEDQSV+ RRRIYYDQ GGEALIC
Sbjct: 122 GSSVPVKISLRPIKMPDIKRLSPYTTWVFLDRNQRMTEDQSVVGRRRIYYDQTGGEALIC 181

Query: 192 SDSEEEVIEEEE-KKDFVDSEDYILR----------------------SPSEVKARYEIL 228
           SDSEEE I++EE K+DF++ EDYI+R                      S SE+KAR+ +L
Sbjct: 182 SDSEEEAIDDEEEKRDFLEPEDYIIRMTLEQLGLSDSVLAELASFLSRSTSEIKARHGVL 241

Query: 229 SKEESAVGGSNNGNDEHTMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPA 288
            KE+      +   D    ++ L KD+E ALDSFDNLFCRRCLVFDCRLHGCSQDL+FPA
Sbjct: 242 MKEKEV----SESGDNQAESSLLNKDMEGALDSFDNLFCRRCLVFDCRLHGCSQDLIFPA 297

Query: 289 EKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSSDGAGAQTSSRK 348
           EK   W    + N+ CG +CY+++LKS R      P  G I+ K  +SSDGAG +T+  K
Sbjct: 298 EKPAPWCPPVDENLTCGANCYKTLLKSGR-----FPGYGTIEGKTGTSSDGAGTKTTPTK 352

Query: 349 ---KFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGI 405
              K +G  R+ K+  SESASSN K   E+SDSE G +QDT     SS  K K  G+   
Sbjct: 353 FSSKLNG--RKPKTFPSESASSNEKCALETSDSENGLQQDTNSDKVSSSPKVKGSGRRVG 410

Query: 406 CKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHK 465
            KR   RVAER     QK+QKK  A D DS+ASG   PSD K      K+NEDA SSS K
Sbjct: 411 RKRNKNRVAERVPRKTQKRQKKTEASDSDSIASGSCSPSDAK-----HKDNEDATSSSQK 465

Query: 466 HAKSSSSGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENMC 525
           H KS +SGK+RK     + S N +   VP+  S E+ S   A  +++SLRK+EF+ E + 
Sbjct: 466 HVKSGNSGKSRKNGTPAEVSNNSVKDDVPVCQSNEVASELDAPGSDESLRKEEFMGETVS 525

Query: 526 KQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQ 585
           +  L+  K W+ +EK LFDKGVEIFG NSCLIARNLL+G K+CWEVFQYMTCSENK    
Sbjct: 526 RGRLATNKLWRPLEKSLFDKGVEIFGMNSCLIARNLLSGFKSCWEVFQYMTCSENKASFF 585

Query: 586 AGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITE 645
            GD      +G SKFD NG   NN+VRRRSR+LRRRG+VRRLKYTWKSAAYHSIRKRITE
Sbjct: 586 GGDGLNP--DGSSKFDINGNMVNNQVRRRSRFLRRRGKVRRLKYTWKSAAYHSIRKRITE 643

Query: 646 RKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQC 705
           +KDQPCRQ+NPC C+ ACGK+CPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQC
Sbjct: 644 KKDQPCRQFNPCNCKIACGKECPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQC 703

Query: 706 PCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSG 765
           PCFAADRECDPDVCRNCW+  GDGSLGVP Q+GDNYECRNMKLLLKQQQRVLLG SDVSG
Sbjct: 704 PCFAADRECDPDVCRNCWVIGGDGSLGVPSQRGDNYECRNMKLLLKQQQRVLLGISDVSG 763

Query: 766 WGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDK 825
           WGAFLKNSV KHEYLGEYTGELISH+EADKRGKIYDREN SFLFNLNDQFVLDAYRKGDK
Sbjct: 764 WGAFLKNSVSKHEYLGEYTGELISHKEADKRGKIYDRENCSFLFNLNDQFVLDAYRKGDK 823

Query: 826 LKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEAS 885
           LKFANHSP+PNCYAKVIMVAGDHRVGIFAKERI AGEELFYDYRYEPDRAPAWA+KPEA 
Sbjct: 824 LKFANHSPEPNCYAKVIMVAGDHRVGIFAKERILAGEELFYDYRYEPDRAPAWAKKPEAP 883

Query: 886 GSKKEEG-GPSSGRAKKLA 903
           GSKK+E   PS GR KKLA
Sbjct: 884 GSKKDENVTPSVGRPKKLA 902
Polycomb group (PcG) protein. Catalytic subunit of some PcG multiprotein complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target genes. Required to regulate floral development by repressing the AGAMOUS homeotic gene in leaves, influorescence stems and flowers. Regulates the antero-posterior organization of the endosperm, as well as the division and elongation rates of leaf cells. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q8S4P6|EZ1_MAIZE Histone-lysine N-methyltransferase EZ1 OS=Zea mays GN=EZ1 PE=2 SV=1 Back     alignment and function description
>sp|Q8S4P4|EZ3_MAIZE Histone-lysine N-methyltransferase EZ3 OS=Zea mays GN=EZ3 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZSM8|EZA1_ARATH Histone-lysine N-methyltransferase EZA1 OS=Arabidopsis thaliana GN=EZA1 PE=2 SV=1 Back     alignment and function description
>sp|Q8S4P5|EZ2_MAIZE Histone-lysine N-methyltransferase EZ2 OS=Zea mays GN=EZ2 PE=2 SV=1 Back     alignment and function description
>sp|O65312|MEDEA_ARATH Histone-lysine N-methyltransferase MEDEA OS=Arabidopsis thaliana GN=MEA PE=1 SV=1 Back     alignment and function description
>sp|A7E2Z2|EZH1_BOVIN Histone-lysine N-methyltransferase EZH1 OS=Bos taurus GN=EZH1 PE=2 SV=2 Back     alignment and function description
>sp|Q92800|EZH1_HUMAN Histone-lysine N-methyltransferase EZH1 OS=Homo sapiens GN=EZH1 PE=1 SV=2 Back     alignment and function description
>sp|P70351|EZH1_MOUSE Histone-lysine N-methyltransferase EZH1 OS=Mus musculus GN=Ezh1 PE=1 SV=1 Back     alignment and function description
>sp|Q5RDS6|EZH1_PONAB Histone-lysine N-methyltransferase EZH1 OS=Pongo abelii GN=EZH1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query903
296082393934 unnamed protein product [Vitis vinifera] 0.961 0.929 0.736 0.0
225438762950 PREDICTED: histone-lysine N-methyltransf 0.961 0.913 0.736 0.0
224084364917 SET domain protein [Populus trichocarpa] 0.967 0.953 0.723 0.0
224094296892 SET domain protein [Populus trichocarpa] 0.953 0.965 0.732 0.0
449463949927 PREDICTED: LOW QUALITY PROTEIN: histone- 0.993 0.967 0.702 0.0
356540672869 PREDICTED: histone-lysine N-methyltransf 0.906 0.942 0.665 0.0
374306302897 CLF-like protein [Aquilegia coerulea] 0.957 0.964 0.636 0.0
357482819870 Histone-lysine N-methyltransferase CLF [ 0.906 0.941 0.654 0.0
34393748922 PHCLF1 [Petunia x hybrida] 0.966 0.946 0.639 0.0
350536571921 EZ2 protein [Solanum lycopersicum] gi|15 0.988 0.969 0.628 0.0
>gi|296082393|emb|CBI21398.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1274 bits (3297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/901 (73%), Positives = 739/901 (82%), Gaps = 33/901 (3%)

Query: 33  KEILSVIDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVD 92
           ++I SVID LK Q  AD  VS++ R+E+NRQ+L+G+T HL++LS ERRNN+  +   SVD
Sbjct: 37  RDISSVIDSLKKQALADRCVSIKERMEENRQRLVGITKHLHKLSEERRNNRNSDIDKSVD 96

Query: 93  LLTKRQREALGVQNGIDVSSGDRDSHISQEDGYASTAVY-GSSNPTKNIIRPIKLNDNKR 151
           LLTKRQR+AL +QNG D ++GD+ SH SQEDG+ S+AV  GSS   KN +RPIKL + KR
Sbjct: 97  LLTKRQRDALDMQNGNDANNGDKASHCSQEDGHVSSAVLLGSSIAVKNAVRPIKLTEVKR 156

Query: 152 LPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSEEEVIEEEEKKD-FVDS 210
           LPPYTTWIFLDRNQRMTEDQSV+ RRRIYYDQ GGEALICSDSEEE IEEEE+K  F D 
Sbjct: 157 LPPYTTWIFLDRNQRMTEDQSVVGRRRIYYDQTGGEALICSDSEEEAIEEEEEKKEFADF 216

Query: 211 EDYILR----------------------SPSEVKARYEILSKEESAVGGSNNGNDE---H 245
           EDYILR                       P EVKARYEIL+K E +V GS NG  E    
Sbjct: 217 EDYILRMTIKETGLSDPVLEALGRYLSRKPCEVKARYEILNKGEKSVVGSKNGVIEDISQ 276

Query: 246 TMNNFLVKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCG 305
           T+ ++L KDL+AALDSFDNLFCRRCLVFDCRLHGCSQDLV PAEKQ  W HLDE N+PCG
Sbjct: 277 TLTSYLDKDLDAALDSFDNLFCRRCLVFDCRLHGCSQDLVSPAEKQLPWNHLDEDNIPCG 336

Query: 306 PHCYRSVLKSERNATACSPLNGDIKEKFISSSDGAGAQTSSRKKFSGPA--RRVKSHQSE 363
            HCYR  +KSE      SP+  D ++K   SSDGAG   SSRK   GP+  RR KS QSE
Sbjct: 337 AHCYRLAVKSESIGMVSSPVCADFEDKTAPSSDGAGPHLSSRKN-CGPSSKRRAKSCQSE 395

Query: 364 SASSNAKNLSESSDSEVGQRQDTAFTHHSS-PSKSKLVGKVGICKRKSKRVAERALVCKQ 422
           SASSN KN+SESSDSE+  +QDT  THHSS P K++LVGK  I KR SKRVAER LVC +
Sbjct: 396 SASSNGKNISESSDSEIRPKQDTTSTHHSSSPPKTRLVGKCAIRKRNSKRVAERVLVCMR 455

Query: 423 KKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHKHAKSSSSGKTRKKEMQI 482
           K+QK M A D DS+ SG + P DMKLRS SRKENEDA+SSS K  K S +G++R+K   +
Sbjct: 456 KRQK-MVASDSDSILSGRLWPRDMKLRSNSRKENEDASSSSLKKVKPSITGRSRRKCSPV 514

Query: 483 QDSRNLMHVRVPLGSSQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGL 542
           QDS  L+   VP G   E++++PPA S++D+LRK+EFV E+MCKQE SD+KSWK IEKG 
Sbjct: 515 QDSNKLVEGEVPEGQMNEMINDPPASSSDDTLRKEEFVDESMCKQERSDDKSWKAIEKGF 574

Query: 543 FDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSENKLFCQAGDAATSLLEGYSKFDF 602
           F+KGVEIFGRNSCLIARNLLNG+KTC EVFQ+M CSENK F +AGD + S++EGYSK DF
Sbjct: 575 FEKGVEIFGRNSCLIARNLLNGMKTCLEVFQFMNCSENKPFFRAGDGSNSMVEGYSKVDF 634

Query: 603 NGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTA 662
           N T GN EVRRRSR+LRRRGRVRRLKYTWKSA YHSIRKRI+ERKDQPCRQYNPCGCQ+A
Sbjct: 635 NETMGN-EVRRRSRFLRRRGRVRRLKYTWKSAGYHSIRKRISERKDQPCRQYNPCGCQSA 693

Query: 663 CGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNC 722
           CGKQC CLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNC
Sbjct: 694 CGKQCACLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNC 753

Query: 723 WISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGE 782
           WISCGDG+LGVP Q+GDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGE
Sbjct: 754 WISCGDGTLGVPSQRGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGE 813

Query: 783 YTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVI 842
           YTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVI
Sbjct: 814 YTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVI 873

Query: 843 MVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEASGSKKEEGGPSSGRAKKL 902
           MVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEASG KKE+  PSSGRAKKL
Sbjct: 874 MVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEASGVKKEDVAPSSGRAKKL 933

Query: 903 A 903
           A
Sbjct: 934 A 934

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225438762|ref|XP_002278164.1| PREDICTED: histone-lysine N-methyltransferase CLF-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224084364|ref|XP_002307273.1| SET domain protein [Populus trichocarpa] gi|222856722|gb|EEE94269.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224094296|ref|XP_002310129.1| SET domain protein [Populus trichocarpa] gi|222853032|gb|EEE90579.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449463949|ref|XP_004149692.1| PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase CLF-like [Cucumis sativus] gi|449508283|ref|XP_004163272.1| PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase CLF-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356540672|ref|XP_003538810.1| PREDICTED: histone-lysine N-methyltransferase CLF-like [Glycine max] Back     alignment and taxonomy information
>gi|374306302|gb|AEZ06400.1| CLF-like protein [Aquilegia coerulea] Back     alignment and taxonomy information
>gi|357482819|ref|XP_003611696.1| Histone-lysine N-methyltransferase CLF [Medicago truncatula] gi|355513031|gb|AES94654.1| Histone-lysine N-methyltransferase CLF [Medicago truncatula] Back     alignment and taxonomy information
>gi|34393748|dbj|BAC84950.1| PHCLF1 [Petunia x hybrida] Back     alignment and taxonomy information
>gi|350536571|ref|NP_001234765.1| EZ2 protein [Solanum lycopersicum] gi|156789074|gb|ABU96078.1| EZ2 [Solanum lycopersicum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query903
TAIR|locus:2005501902 CLF "CURLY LEAF" [Arabidopsis 0.942 0.943 0.594 6e-270
TAIR|locus:2132178856 SWN "SWINGER" [Arabidopsis tha 0.377 0.398 0.673 1.7e-176
TAIR|locus:2196110689 MEA "MEDEA" [Arabidopsis thali 0.324 0.425 0.491 7.9e-98
UNIPROTKB|A7E2Z2747 EZH1 "Histone-lysine N-methylt 0.244 0.295 0.525 1.7e-80
UNIPROTKB|E1BD02751 EZH2 "Uncharacterized protein" 0.230 0.276 0.532 2.4e-79
UNIPROTKB|F1NBM3749 EZH1 "Uncharacterized protein" 0.244 0.295 0.534 1.7e-78
ZFIN|ZDB-GENE-050114-1749 ezh1 "enhancer of zeste homolo 0.254 0.307 0.506 3.5e-78
UNIPROTKB|E2R6Q2751 EZH2 "Uncharacterized protein" 0.230 0.276 0.532 3.5e-78
UNIPROTKB|Q28D84748 ezh2 "Histone-lysine N-methylt 0.230 0.278 0.532 3.5e-78
UNIPROTKB|E1C0W5761 EZH2 "Uncharacterized protein" 0.230 0.273 0.532 4.4e-78
TAIR|locus:2005501 CLF "CURLY LEAF" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2596 (918.9 bits), Expect = 6.0e-270, P = 6.0e-270
 Identities = 539/907 (59%), Positives = 631/907 (69%)

Query:     1 MASKASPSASPNRSEPLKSSSLTKTENGTLTRKEILSVIDCLKNQVAADHFVSVQRRVEK 60
             MAS+ASPS+S  RSEP K S     E G  + KE+  VI+ LK ++AAD  +S+++R+++
Sbjct:     1 MASEASPSSSATRSEPPKDSPAE--ERGPAS-KEVSEVIESLKKKLAADRCISIKKRIDE 57

Query:    61 NRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHIS 120
             N++ L  +T    R S+ER  +      GS DLL KRQR++ G+++GID S+ +R  ++ 
Sbjct:    58 NKKNLFAITQSFMRSSMERGGSCK---DGS-DLLVKRQRDSPGMKSGIDESNNNR--YV- 110

Query:   121 QEDGYASTA-VYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRI 179
              EDG AS+  V GSS P K  +RPIK+ D KRL PYTTW+FLDRNQRMTEDQSV+ RRRI
Sbjct:   111 -EDGPASSGMVQGSSVPVKISLRPIKMPDIKRLSPYTTWVFLDRNQRMTEDQSVVGRRRI 169

Query:   180 YYDQNGGEALICSDSXXXXXXXXX-KKDFVDSEDYILR---------------------- 216
             YYDQ GGEALICSDS          K+DF++ EDYI+R                      
Sbjct:   170 YYDQTGGEALICSDSEEEAIDDEEEKRDFLEPEDYIIRMTLEQLGLSDSVLAELASFLSR 229

Query:   217 SPSEVKARYEILSKEESAVGGSNNGNDEHTMNNFLVKDLEAALDSFDNLFCRRCLVFDCR 276
             S SE+KAR+ +L KE+     S +G D    ++ L KD+E ALDSFDNLFCRRCLVFDCR
Sbjct:   230 STSEIKARHGVLMKEKEV---SESG-DNQAESSLLNKDMEGALDSFDNLFCRRCLVFDCR 285

Query:   277 LHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISS 336
             LHGCSQDL+FPAEK   W    + N+ CG +CY+++LKS R      P  G I+ K  +S
Sbjct:   286 LHGCSQDLIFPAEKPAPWCPPVDENLTCGANCYKTLLKSGR-----FPGYGTIEGKTGTS 340

Query:   337 SDGAGAQTSSRKKFSGP--ARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSP 394
             SDGAG +T+  K FS     R+ K+  SESASSN K   E+SDSE G +QDT     SS 
Sbjct:   341 SDGAGTKTTPTK-FSSKLNGRKPKTFPSESASSNEKCALETSDSENGLQQDTNSDKVSSS 399

Query:   395 SKSKLVGK-VGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSR 453
              K K  G+ VG  KR   RVAER     QK+QKK  A D DS+ASG   PSD K      
Sbjct:   400 PKVKGSGRRVGR-KRNKNRVAERVPRKTQKRQKKTEASDSDSIASGSCSPSDAK-----H 453

Query:   454 KENEDANXXXXXXXXXXXXGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDS 513
             K+NEDA             GK+RK     + S N +   VP+  S E+ S   A  +++S
Sbjct:   454 KDNEDATSSSQKHVKSGNSGKSRKNGTPAEVSNNSVKDDVPVCQSNEVASELDAPGSDES 513

Query:   514 LRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQ 573
             LRK+EF+ E + +  L+  K W+ +EK LFDKGVEIFG NSCLIARNLL+G K+CWEVFQ
Sbjct:   514 LRKEEFMGETVSRGRLATNKLWRPLEKSLFDKGVEIFGMNSCLIARNLLSGFKSCWEVFQ 573

Query:   574 YMTCSENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVXXXXXXXXXXXXXXXLKYTWKS 633
             YMTCSENK     GD      +G SKFD NG   NN+V               LKYTWKS
Sbjct:   574 YMTCSENKASFFGGDGLNP--DGSSKFDINGNMVNNQVRRRSRFLRRRGKVRRLKYTWKS 631

Query:   634 AAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGC 693
             AAYHSIRKRITE+KDQPCRQ+NPC C+ ACGK+CPCLLNGTCCEKYCGCPKSCKNRFRGC
Sbjct:   632 AAYHSIRKRITEKKDQPCRQFNPCNCKIACGKECPCLLNGTCCEKYCGCPKSCKNRFRGC 691

Query:   694 HCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMXXXXXXX 753
             HCAKSQCRSRQCPCFAADRECDPDVCRNCW+  GDGSLGVP Q+GDNYECRNM       
Sbjct:   692 HCAKSQCRSRQCPCFAADRECDPDVCRNCWVIGGDGSLGVPSQRGDNYECRNMKLLLKQQ 751

Query:   754 XRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLND 813
              RVLLG SDVSGWGAFLKNSV KHEYLGEYTGELISH+EADKRGKIYDREN SFLFNLND
Sbjct:   752 QRVLLGISDVSGWGAFLKNSVSKHEYLGEYTGELISHKEADKRGKIYDRENCSFLFNLND 811

Query:   814 QFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPD 873
             QFVLDAYRKGDKLKFANHSP+PNCYAKVIMVAGDHRVGIFAKERI AGEELFYDYRYEPD
Sbjct:   812 QFVLDAYRKGDKLKFANHSPEPNCYAKVIMVAGDHRVGIFAKERILAGEELFYDYRYEPD 871

Query:   874 RAPAWAR 880
             RAPAWA+
Sbjct:   872 RAPAWAK 878
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0009965 "leaf morphogenesis" evidence=IMP
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0006349 "regulation of gene expression by genetic imprinting" evidence=RCA;IMP
GO:0016571 "histone methylation" evidence=RCA;IMP
GO:0009294 "DNA mediated transformation" evidence=IMP
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP
GO:0045857 "negative regulation of molecular function, epigenetic" evidence=IMP
GO:0003727 "single-stranded RNA binding" evidence=IDA
GO:0006306 "DNA methylation" evidence=RCA
GO:0010048 "vernalization response" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
TAIR|locus:2132178 SWN "SWINGER" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196110 MEA "MEDEA" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A7E2Z2 EZH1 "Histone-lysine N-methyltransferase EZH1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1BD02 EZH2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBM3 EZH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050114-1 ezh1 "enhancer of zeste homolog 1 (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2R6Q2 EZH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q28D84 ezh2 "Histone-lysine N-methyltransferase EZH2" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|E1C0W5 EZH2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P93831CLF_ARATH2, ., 1, ., 1, ., 4, 30.62670.95450.9556yesno
Q8S4P6EZ1_MAIZE2, ., 1, ., 1, ., 4, 30.59170.93790.9097N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.430.991
3rd Layer2.1.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
SDG916
SET domain protein (917 aa)
(Populus trichocarpa)
Predicted Functional Partners:
PGE901
polycomb group protein (371 aa)
    • • 0.413

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query903
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 1e-35
pfam00856113 pfam00856, SET, SET domain 1e-24
COG2940480 COG2940, COG2940, Proteins containing SET domain [ 2e-13
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information 
 Score =  130 bits (330), Expect = 1e-35
 Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 2/119 (1%)

Query: 755 RVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN--SSFLFNLN 812
           ++ + +S   GWG      + K E++GEY GE+I+  EA++R K YD +   + +LF+++
Sbjct: 2   KLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYDTDGAKAFYLFDID 61

Query: 813 DQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYE 871
               +DA RKG+  +F NHS +PNC    + V GD R+ IFA   I  GEEL  DY  +
Sbjct: 62  SDLCIDARRKGNLARFINHSCEPNCELLFVEVNGDDRIVIFALRDIKPGEELTIDYGSD 120

Putative methyl transferase, based on outlier plant homologues. Length = 124
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information
>gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 903
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 100.0
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 100.0
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 99.97
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 99.95
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 99.9
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 99.89
KOG1085392 consensus Predicted methyltransferase (contains a 99.75
KOG11411262 consensus Predicted histone methyl transferase [Ch 99.71
COG2940480 Proteins containing SET domain [General function p 99.61
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.48
KOG1081463 consensus Transcription factor NSD1 and related SE 98.95
KOG2589 453 consensus Histone tail methylase [Chromatin struct 98.44
KOG2461 396 consensus Transcription factor BLIMP-1/PRDI-BF1, c 98.14
KOG1141 1262 consensus Predicted histone methyl transferase [Ch 97.45
smart0057051 AWS associated with SET domains. subdomain of PRES 94.18
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 92.22
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 92.03
PF05033103 Pre-SET: Pre-SET motif; InterPro: IPR007728 This r 88.73
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 87.89
KOG1171406 consensus Metallothionein-like protein [Inorganic 80.28
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=3.7e-120  Score=1023.46  Aligned_cols=660  Identities=38%  Similarity=0.585  Sum_probs=519.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHhhhhHhhhhcccccccccCCCchhhHHHHhhhcccccCcCCCCCCCCCccccccc
Q 002595           45 QVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDG  124 (903)
Q Consensus        45 qi~~~R~~~ik~~~e~n~~~l~~~t~~~~~~~~~r~~~~~~~~~~~~~~l~~R~~~pl~~~~g~~~~~~~~~~~~~~~~~  124 (903)
                      +++..++.+++++...+|.+...+|+.+- ++..+......++   +.++..++.-|++++|++..+..+.+.+.+-++ 
T Consensus        51 ~~~~~~~~~~~~~~~~~r~k~~~~~~~~~-~~~~~~~i~~~n~---~~~v~~~~~~~~~q~nfmv~~~~~~~~ip~~~~-  125 (739)
T KOG1079|consen   51 KRRLKPVRSAKEVDGDIRVKVDLDTSIFD-FPSQKSPINELNA---VAQVPIMYSWPPLQQNFMVEDETVLHNIPYMGD-  125 (739)
T ss_pred             hhhcccccccccccccccccccccccccc-Ccccccchhhhcc---cccccccccCChhhhcceecccceecccccccc-
Confidence            37777888888888888888888888885 6666665544444   788899999999999999887777665543332 


Q ss_pred             ccccccccCCCCCccccccccccCCCCCCCCceeEeecccccccccccccccceeeecCCCCeEEEecCchhcchhhhhh
Q 002595          125 YASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSEEEVIEEEEK  204 (903)
Q Consensus       125 ~~~~~v~~~~~~~~~~~~~iklp~v~~lPpyttWifldrNqrMaeDqSVvGrRrIYYd~~g~EaLicSd~eee~~~ee~k  204 (903)
                          .           |..|++|++|.|+|||+|||+||||||++||+|||+|+||| |.|||++| ||+|||...+|+|
T Consensus       126 ----~-----------v~~~k~~~ieel~~y~~~v~~dr~~~~~~d~v~ve~~~a~~-Q~~~e~dg-~D~~~e~~~~~ek  188 (739)
T KOG1079|consen  126 ----E-----------VLDIKGPFIEELIKYDGKVHGDRNQRFMEDQVFVELVVALY-QYGGEHDG-SDDEEEEVLEEEK  188 (739)
T ss_pred             ----c-----------ccccccchhhhcccccceeeccccccchhhhhHHHHHHHHH-hcCCcccc-CCCccccchhhhc
Confidence                1           35599999999999999999999999999999999999999 99999999 9999996559999


Q ss_pred             ccCCCCcCc-ccc------------------------ChhHHHHHHHHhhhccccCCCCCCCCCCccc-cchhhhc-HHH
Q 002595          205 KDFVDSEDY-ILR------------------------SPSEVKARYEILSKEESAVGGSNNGNDEHTM-NNFLVKD-LEA  257 (903)
Q Consensus       205 ~~f~e~ed~-~~~------------------------~~sei~eRy~~l~~~~~~~~~~~~~~~~~~~-~~~~~k~-l~~  257 (903)
                      ++|.|++|. |+|                        ++++|+|||.+|+....+.....  +++... ++.+++. +.+
T Consensus       189 r~~~e~~~~~~~~~~~~~~~~~~~if~~~~~~f~~k~~~~~lke~~~~l~~~~~p~~~e~--~~~~~id~~~ae~~~r~~  266 (739)
T KOG1079|consen  189 RDFLEGEDDDIIESINKLSFPADKIFQAISSMFPDKLTASELKERYGELTSKSLPVAEEP--ECTPNIDGSSAEPVQREQ  266 (739)
T ss_pred             ccccCcccchhhHhhhhhccchHHHHHHHhhhcccccchhhhhHHHhhhhhccccccCCc--ccccCCCccccChHHHHh
Confidence            999999998 788                        89999999999997666665554  444444 4445555 679


Q ss_pred             HhhhcccccccccccccccCcCCCCCccCCCCCCCCCCCCCCCCCCCcccchhhccccccccccCCCCCCCcccccccCC
Q 002595          258 ALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSS  337 (903)
Q Consensus       258 aldsFdnlFCRRClvfDC~lHg~sq~li~p~ekq~~~~~~~~d~~PCg~~Cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (903)
                      +|||||||||||||+|||+||| +|.++||+++...|.++..+..|||+.||..+.+..+...                +
T Consensus       267 ~l~sF~tlfCrrCl~ydC~lHg-~~~~~~pn~~~r~e~~~a~~~~pc~p~~~~~l~~~~~~~m----------------~  329 (739)
T KOG1079|consen  267 ALHSFHTLFCRRCLKYDCFLHG-SQFHAFPNTKKRKEDEPALENEPCGPGCYGLLEGAKEKTM----------------S  329 (739)
T ss_pred             hhcccccceeeeeeeeeccccC-ccccccccccccCCCCccccccCCCCchhhhhhccchhhh----------------h
Confidence            9999999999999999999999 9999999999999999999999999999999854332200                0


Q ss_pred             CCCCCccCCccccCCCCccccccccccccccccccCCCCcccccccCCccccccCCCCccccccccccccccchhHHHHH
Q 002595          338 DGAGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVAERA  417 (903)
Q Consensus       338 ~~~~~~~~~~~~~~~~~r~~k~~~~~~~~~~~~~~ses~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~  417 (903)
                      .+.+ ..++.+                                                       |.            
T Consensus       330 ~~~~-~~~p~~-------------------------------------------------------g~------------  341 (739)
T KOG1079|consen  330 AVVS-KCPPIR-------------------------------------------------------GD------------  341 (739)
T ss_pred             cccc-cCCCCc-------------------------------------------------------ch------------
Confidence            0000 000000                                                       00            


Q ss_pred             HHHHHHhhhhhcccCcccccCCCCCCccccccccccccccccCCCcccCCCCCCCccccccchhhcccccccccccCCCC
Q 002595          418 LVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHKHAKSSSSGKTRKKEMQIQDSRNLMHVRVPLGS  497 (903)
Q Consensus       418 ~~~~~k~~~~~~~~~~~s~~~~~~~~~d~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  497 (903)
                           ++||--.++..+|-              +.+...++.+..+......+..+                       +
T Consensus       342 -----~~qk~~~~~~~~s~--------------~~~~~~e~~g~~~d~~v~~~~~~-----------------------~  379 (739)
T KOG1079|consen  342 -----IRQKLVKASSMDSD--------------DEHVEEEDKGHDDDDGVPRGFGG-----------------------S  379 (739)
T ss_pred             -----hhhhhcccccCCcc--------------hhhccccccCccccccccccccc-----------------------c
Confidence                 12221111111111              11122223333222222211100                       0


Q ss_pred             CccccCCCCCCCCCccchhhHHHhhhhhccccCCCCCchhhHhHHHHHHHHhhCCccHHHHHhhhCCCccHHHHHHHHhh
Q 002595          498 SQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTC  577 (903)
Q Consensus       498 ~~~~~~~~~~~~~~~~~r~~e~v~~~~~~~e~~~~~~Wt~~E~~L~~k~~~ifg~NsC~iA~~Ll~g~KtC~eV~~ym~~  577 (903)
                      .+....+..+..++...+++.+|.-..     ....+|+++|+.||++++.+||.|+|+|||+|+  +|||++||+||+.
T Consensus       380 ~~~v~~~~~~~~s~~~~~c~~~~~~~~-----~~~~ew~~~ek~~fr~~~~~~~~n~c~Iar~l~--~ktC~~v~~~~~~  452 (739)
T KOG1079|consen  380 VNFVGEDDTSTHSSTNSICQNPVHGKK-----DTNVEWNGAEKVLFRVGSTLYGTNRCSIARNLL--TKTCRQVYEYEQK  452 (739)
T ss_pred             cccccCCcccccccccccccCcccccC-----CcccccchhhhHHHHhccccccchhhHHHHHhc--chHHHHHHHHhhc
Confidence            011111111222222333332222211     235689999999999999999999999999994  5999999999997


Q ss_pred             hccccccccCcccchhccccccccCCCCCCCccccchhHHHHhhhcccccccccCCccccchhhhcccccCCCCCCCCCC
Q 002595          578 SENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPC  657 (903)
Q Consensus       578 ~~~~~~~~~~~~~~s~~~~~~k~~~~~~~~~~~~~~r~r~~rr~~r~r~l~~~~ks~~~~~irkri~~~Kd~~~~~y~pC  657 (903)
                      .........+.                ......++.|.+.+|+.++.+++.+.|++..++.+|.            |+||
T Consensus       453 e~~~~~~~~~~----------------~~~~~~~~~r~~~~r~~g~~r~k~q~kk~~~~~~v~~------------~qpC  504 (739)
T KOG1079|consen  453 EVLQGLYFDGR----------------FRVELPGPKRARKLRLWGRHRRKIQNKKDSRHTVVWN------------YQPC  504 (739)
T ss_pred             chhhceecccc----------------cccccCcchhhHHHHhhhhHHHhhhcccccCCceeee------------cCcc
Confidence            65433222110                0123456778899999999999999999888877653            5566


Q ss_pred             CCCCC--CCCCCccccCCccccCCCCCCccccCcCcCcccCCCCccCCCCcccccccccCCCCCCCcccccCCCCCCCCC
Q 002595          658 GCQTA--CGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPD  735 (903)
Q Consensus       658 ~c~g~--C~~~C~C~~~g~~Cek~C~C~~~C~nRf~GC~C~~~~C~t~~CpC~~~~rECDPd~C~~C~~~Cg~~~l~~p~  735 (903)
                      +|+++  |+.+|+|+.++++||++|+|+++|.|||+||+| ++||++++|||+++.|||||++|..||.        .+.
T Consensus       505 ~hp~~c~c~~~C~C~~n~~~CEk~C~C~~dC~nrF~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~cg~--------~~~  575 (739)
T KOG1079|consen  505 DHPGPCNCGVGCPCIDNETFCEKFCYCSPDCRNRFPGCRC-KAQCNTKQCPCYLAVRECDPDVCLMCGN--------VDH  575 (739)
T ss_pred             cCCCCCCCCCCCcccccCcchhhcccCCHHHHhcCCCCCc-ccccccCcCchhhhccccCchHHhccCc--------ccc
Confidence            66544  478999999999999999999999999999999 9999999999999999999999999985        244


Q ss_pred             CCCCcccccchhhhcccceeEEEEEcCCCCceeeeecccCCCceEEEeccccccHHHHhhhhcccccCCCccccccCccE
Q 002595          736 QKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQF  815 (903)
Q Consensus       736 ~~g~~~~C~N~~lqrg~~kkl~V~~S~~kG~GLFA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd~~~~sYlf~L~~~~  815 (903)
                      .++..+.|+|+.+|++++++|.|++|.+.|||||+++.+.|++||.||+||+|+++||++|+++||..+.+|+|+|+.++
T Consensus       576 ~d~~~~~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~cSflFnln~dy  655 (739)
T KOG1079|consen  576 FDSSKISCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMCSFLFNLNNDY  655 (739)
T ss_pred             cccCccccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhcccccccccceeeeeccccc
Confidence            56777899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccccCCcccccCCCCCCCceeEEEEEcCeeEEEEEEecCCCCCCeeeeecCCCCCCCcccCCCCCCCCCCcCCCCCC
Q 002595          816 VLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEASGSKKEEGGPS  895 (903)
Q Consensus       816 vIDA~~~GN~aRFINHSC~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg~~~d~~pC~Cgsp~CrG~Kk~e~~~s  895 (903)
                      +|||+++||.+||+|||-+|||++.+++|+|+|||+|||.|.|.+||||||||+|+.++++-|-+.+.  +.++.+....
T Consensus       656 viDs~rkGnk~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs~~~~~k~~~~~~--~s~k~e~~~~  733 (739)
T KOG1079|consen  656 VIDSTRKGNKIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYSPEHALKFVGIER--ESYKVELKIF  733 (739)
T ss_pred             eEeeeeecchhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccCccccccccccCc--cccccchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999988877  7788887777


Q ss_pred             ccchhc
Q 002595          896 SGRAKK  901 (903)
Q Consensus       896 ~~rakk  901 (903)
                      |.+.+|
T Consensus       734 q~~~~~  739 (739)
T KOG1079|consen  734 QATQQK  739 (739)
T ss_pred             hhhcCC
Confidence            766554

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>smart00570 AWS associated with SET domains Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query903
2w5y_A192 Binary Complex Of The Mixed Lineage Leukaemia (Mll1 3e-18
3ope_A222 Structural Basis Of Auto-Inhibitory Mechanism Of Hi 2e-16
2r3a_A300 Methyltransferase Domain Of Human Suppressor Of Var 9e-16
3ooi_A232 Crystal Structure Of Human Histone-Lysine N-Methylt 8e-15
4fmu_A278 Crystal Structure Of Methyltransferase Domain Of Hu 3e-13
2o8j_A281 Human Euchromatic Histone Methyltransferase 2 Lengt 2e-12
3k5k_A283 Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin 2e-12
2igq_A285 Human Euchromatic Histone Methyltransferase 1 Lengt 2e-11
3hna_A287 Crystal Structure Of Catalytic Domain Of Human Euch 2e-11
3fpd_A261 G9a-Like Protein Lysine Methyltransferase Inhibitio 3e-11
4i51_A286 Methyltransferase Domain Of Human Euchromatic Histo 1e-10
1mvh_A299 Structure Of The Set Domain Histone Lysine Methyltr 6e-08
4ij8_A165 Crystal Structure Of The Complex Of Setd8 With Sam 2e-07
1zkk_A167 Crystal Structure Of Hset8 In Ternary Complex With 5e-07
2bqz_A161 Crystal Structure Of A Ternary Complex Of The Human 6e-07
3bo5_A290 Crystal Structure Of Methyltransferase Domain Of Hu 6e-07
1ml9_A302 Structure Of The Neurospora Set Domain Protein Dim- 1e-06
3f9z_A166 Structural Insights Into Lysine Multiple Methylatio 2e-06
3f9w_A166 Structural Insights Into Lysine Multiple Methylatio 2e-06
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 Back     alignment and structure 
Iteration: 1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 756 VLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN-SSFLFNLNDQ 814
           V + RS + G G F K ++   E + EY G +I   + DKR K YD +    ++F ++D 
Sbjct: 54  VGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGIGCYMFRIDDS 113
Query: 815 FVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRY 870
            V+DA   G+  +F NHS +PNCY++VI + G   + IFA  +I  GEEL YDY++
Sbjct: 114 EVVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKF 169
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 Back     alignment and structure
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 Back     alignment and structure
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 Back     alignment and structure
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 Back     alignment and structure
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 Back     alignment and structure
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 Back     alignment and structure
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 Back     alignment and structure
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 Back     alignment and structure
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 Back     alignment and structure
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 Back     alignment and structure
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 Back     alignment and structure
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam Length = 165 Back     alignment and structure
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4 Peptide (16-24) And Adohcy Length = 167 Back     alignment and structure
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Pr-Set7 (Also Known As Set8) Length = 161 Back     alignment and structure
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 Back     alignment and structure
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 Back     alignment and structure
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query903
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 5e-46
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 2e-42
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 2e-42
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 7e-42
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 2e-41
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 3e-40
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 6e-40
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 3e-37
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 3e-35
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 2e-30
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 8e-30
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 7e-29
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 4e-16
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 2e-14
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 4e-13
3db5_A151 PR domain zinc finger protein 4; methyltransferase 1e-11
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 3e-11
3dal_A196 PR domain zinc finger protein 1; methyltransferase 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 5e-10
1n7d_A 699 LDL receptor, low-density lipoprotein receptor; fa 8e-05
3ray_A237 PR domain-containing protein 11; structural genomi 5e-04
2f83_A625 Coagulation factor XI; protease, apple domain, hyd 7e-04
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 Back     alignment and structure
 Score =  162 bits (412), Expect = 5e-46
 Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 698 SQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVL 757
                RQ P +  + E + +V            L +P         R   L    ++ V 
Sbjct: 4   GSHMHRQPPEYNPNDEEEEEVQLKSARRATSMDLPMP--------MRFRHLKKTSKEAVG 55

Query: 758 LGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN-SSFLFNLNDQFV 816
           + RS + G G F K ++   E + EY G +I   + DKR K YD +    ++F ++D  V
Sbjct: 56  VYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGIGCYMFRIDDSEV 115

Query: 817 LDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPD 873
           +DA   G+  +F NHS +PNCY++VI + G   + IFA  +I  GEEL YDY++  +
Sbjct: 116 VDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIE 172
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Length = 237 Back     alignment and structure
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 903
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 5e-35
d1ml9a_284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 4e-31
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 3e-28
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 6e-13
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  132 bits (332), Expect = 5e-35
 Identities = 53/220 (24%), Positives = 80/220 (36%), Gaps = 25/220 (11%)

Query: 668 PCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADR--ECDPDVCRNCWIS 725
           P   +G  C    GC  +  +R   C C             A  R       V   C   
Sbjct: 62  PNFQSGCNCSSLGGCDLNNPSR---CECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSF 118

Query: 726 CGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTG 785
           C               EC N  +   +   + + ++   GWG           ++  Y G
Sbjct: 119 CSCSM-----------ECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLG 167

Query: 786 ELISHREADKRGKIYDRENSSFLFNL-----NDQFVLDAYRKGDKLKFANHSPDPNCYAK 840
           E+I+  EA KR K YD +  ++LF+L       ++ +DA   GD  +F NHS  PN    
Sbjct: 168 EVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIY 227

Query: 841 VIMVAGD----HRVGIFAKERISAGEELFYDYRYEPDRAP 876
             +        + +  FA + I   EEL +DY    D +P
Sbjct: 228 SAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSP 267
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query903
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 100.0
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 100.0
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 99.93
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 99.85
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 98.69
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 93.79
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 92.83
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 90.34
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 88.78
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=6.4e-43  Score=308.60  Aligned_cols=136  Identities=29%  Similarity=0.452  Sum_probs=127.8

Q ss_pred             CCCCHHHHCCCCEEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCC-----CCEE
Q ss_conf             34113653025116999972888724554023478845899505003488784420113468984300268-----6289
Q 002595          742 ECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN-----DQFV  816 (903)
Q Consensus       742 ~C~N~~lqrg~~k~l~I~kS~~kGwGLfA~edI~kGefI~EY~GEIIs~~Ea~rR~k~yd~~~~sYlf~L~-----~~~~  816 (903)
                      .|.|+.+|+|++.+|+|++|+.+||||||+++|++|+||+||+||+|+..++.+|...|+.....|+|.+.     ..++
T Consensus       124 ~C~Nr~~q~g~~~~leV~~t~~~G~GvfA~~~I~kGt~I~eY~Gevi~~~e~~~R~~~y~~~~~~~~~~l~~~~~~~~~~  203 (269)
T d1mvha_         124 ECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYT  203 (269)
T ss_dssp             TCTTCTGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEECCCEEEEHHHHHHHHTTCCSCSCCCEEEECSSCSSSCEE
T ss_pred             CCCCEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCEEECHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCE
T ss_conf             89784647888348799980787768985853078956788606577599999988767643884101111024665304


Q ss_pred             EECCCCCCCCCCCCCCCCCCCEEEEEEECCE----EEEEEEEECCCCCCCEEEEECCCCCCCCCC
Q ss_conf             9144458923235799999710389999690----399999803899998254626999999853
Q 002595          817 LDAYRKGDKLKFANHSPDPNCYAKVIMVAGD----HRVGIFAKERISAGEELFYDYRYEPDRAPA  877 (903)
Q Consensus       817 IDA~~~GN~aRFINHSC~PNc~~~~v~V~G~----~RI~ifA~RdI~aGEELTfDYgy~~d~~pC  877 (903)
                      |||+..||++|||||||+|||.++.|++++.    ++|+|||+|+|++||||||||||..+.+|.
T Consensus       204 iDa~~~GN~aRFiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~DYG~~~d~~P~  268 (269)
T d1mvha_         204 VDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPV  268 (269)
T ss_dssp             EECSSEECGGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTSSSSCC
T ss_pred             EEEEECCCCEEEEECCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCC
T ss_conf             64334486417731589988177899966876764269999898349999898713997677988
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure