Citrus Sinensis ID: 002596

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900--
MATSVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKYQVHDSIVTLIIKA
ccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHcHHHHHHHHHHHHcHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHcHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHccccccHHHHHHccc
ccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccccHHHcccHHcccHHccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHccccccEEEEEEcc
matsvawqpqeqGFNEICRLLEqqispsstadkSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTayksmspsnqqyiksellpclgaadrhirsTVGTIVSVVVQLGGIAGWLELLQALVTCldsndinhMEGAMDALSKICedipqvldsdvpglaecpiniflprllqffqsphtslrklslgSVNQFIMLMPSALFVSMDQYLQGLfllsndpsaEVRKLVCAAFNLLIevrpsflephLRNLFEYMLQVnkdtdddvALEACEFWHSYFEAqlphenlkeflPRLVPVLLSnmiyadddeslveaeedeslpdrdqdlkprfhssrlhgsenpedddddivnVWNLRKCSAAALDVLSnvfgdeilptlMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIpllddkfplirsiscwtlsrfSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGfelnqpvyldilmppliakwqqlpnsdkdlfplLECFTSIAQALGAGFTQFAQPVFQRCINIIQTqqlakvdsvaagaqydKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAwvcpelvsphmehfmQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWdqcmsaleppvkdklskyqVHDSIVTLIIKA
matsvawqpqeQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEedeslpdrdqdlkprfhssrlhgsenpeddddDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALeppvkdklskyqvhdSIVTLIIKA
MATSVAWQPQEQGFNEICRLLEQQISPSSTADKSqiwqqlqqysqFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSafatleeeaaeelaprleIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCldllsglaeglgsgieslVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKYQVHDSIVTLIIKA
*************FNEICRLL*************QIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK*******QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA******************************************DIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKYQVHDSIVTLII**
***SVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLP*****EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQ******KDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLA*V***AAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKYQVHDSIVTLIIKA
*********QEQGFNEICRLLEQQI***********WQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDES************RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKYQVHDSIVTLIIKA
*****AWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSS****************NVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKYQVHDSIVTLIIKA
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATSVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKYQVHDSIVTLIIKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query902 2.2.26 [Sep-21-2011]
Q8H0U4891 Transportin-1 OS=Arabidop yes no 0.985 0.997 0.773 0.0
B8ARW2890 Transportin-1 OS=Oryza sa N/A no 0.985 0.998 0.744 0.0
B9FDR3891 Transportin-1 OS=Oryza sa yes no 0.984 0.996 0.745 0.0
Q8BFY9898 Transportin-1 OS=Mus musc yes no 0.960 0.964 0.45 0.0
Q3SYU7898 Transportin-1 OS=Bos taur yes no 0.960 0.964 0.448 0.0
Q92973898 Transportin-1 OS=Homo sap yes no 0.960 0.964 0.448 0.0
Q99LG2887 Transportin-2 OS=Mus musc no no 0.960 0.976 0.448 0.0
O14787897 Transportin-2 OS=Homo sap no no 0.960 0.965 0.443 0.0
O14089910 Importin subunit beta-2 O yes no 0.944 0.936 0.375 1e-159
Q55CQ7931 Transportin OS=Dictyostel yes no 0.574 0.556 0.431 1e-123
>sp|Q8H0U4|TNPO1_ARATH Transportin-1 OS=Arabidopsis thaliana GN=TRN1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1431 bits (3703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 688/890 (77%), Positives = 795/890 (89%), Gaps = 1/890 (0%)

Query: 2   ATSVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAE 61
           AT+V WQP++ G  EIC LLEQQISPSS  DKSQIW+QLQ +SQFPDFNNYL FIL RAE
Sbjct: 3   ATAVVWQPRDDGLAEICSLLEQQISPSSVVDKSQIWKQLQHFSQFPDFNNYLVFILVRAE 62

Query: 62  GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVV 121
           GKSVE+RQAAGLLLKNNLR AY SM+  NQ+YIKSELLPCLGAADR+IR+TVGTI+SV+V
Sbjct: 63  GKSVEVRQAAGLLLKNNLRGAYPSMTQENQKYIKSELLPCLGAADRNIRTTVGTIISVIV 122

Query: 122 QLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181
            + G++GW ELL ALVTCLDSND+NHM+GAMDALSKICEDIP VLD++VPGLAE PINIF
Sbjct: 123 NIEGVSGWHELLPALVTCLDSNDLNHMDGAMDALSKICEDIPHVLDTEVPGLAERPINIF 182

Query: 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLV 241
           LPRLLQFFQSPH SLRKL+LGSVNQ+I++MP+AL+ S+D+YLQGLF+L+NDP  EVRKLV
Sbjct: 183 LPRLLQFFQSPHASLRKLALGSVNQYIIIMPAALYNSLDKYLQGLFVLANDPVPEVRKLV 242

Query: 242 CAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKE 301
           CAAF  L EV PS +EPHLRN+ EYMLQVN+D D++V+LEACEFW +Y +AQLP ENLKE
Sbjct: 243 CAAFVHLTEVLPSSIEPHLRNVMEYMLQVNRDPDEEVSLEACEFWSAYCDAQLPPENLKE 302

Query: 302 FLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDI 361
           FLPRL+PVLL NM YADDDESL++AEEDES PDRDQDLKPRFH+SRLHGSE+ +DDDDD 
Sbjct: 303 FLPRLIPVLLENMAYADDDESLLDAEEDESQPDRDQDLKPRFHTSRLHGSEDFDDDDDDS 362

Query: 362 VNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421
            NVWNLRKCSAAA+DVLSNVFGDEILP LMP+IQ  LSASGDEAWK REAAVLALGAIAE
Sbjct: 363 FNVWNLRKCSAAAIDVLSNVFGDEILPALMPLIQKNLSASGDEAWKQREAAVLALGAIAE 422

Query: 422 GCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481
           GC+ GLYPHLSEIVAFL+PLLDDKFPLIRSISCWTLSRF K+++Q+ G+  G EQFEKVL
Sbjct: 423 GCMNGLYPHLSEIVAFLLPLLDDKFPLIRSISCWTLSRFGKYLIQESGNPKGYEQFEKVL 482

Query: 482 MGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVY 541
           MGLL+R+LDTNKRVQEAACSAFAT+EE+AAEEL P L +ILQHLM AFGKYQRRNLRIVY
Sbjct: 483 MGLLRRLLDTNKRVQEAACSAFATVEEDAAEELVPHLGVILQHLMCAFGKYQRRNLRIVY 542

Query: 542 DAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFT 601
           DAIGTLAD+V  ELN+P YL+ILMPPL+AKWQQL NSDKDLFPLLECFTSI+QALG GF 
Sbjct: 543 DAIGTLADSVREELNKPAYLEILMPPLVAKWQQLSNSDKDLFPLLECFTSISQALGVGFA 602

Query: 602 QFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQ 661
            FAQPVFQRC++IIQ QQLAKV+  +AGAQYD+EF+VC LDLLSGLAEGLGSGIESLV Q
Sbjct: 603 PFAQPVFQRCMDIIQLQQLAKVNPASAGAQYDREFIVCSLDLLSGLAEGLGSGIESLVQQ 662

Query: 662 SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKET 721
           SNLRD+LL CC+D+A+DVRQSAFAL+GDLARV PV+LQ RL DFL+IA++QL+    +E 
Sbjct: 663 SNLRDLLLNCCIDEAADVRQSAFALMGDLARVFPVYLQPRLLDFLEIASQQLSANLNREN 722

Query: 722 VSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAW 781
           +SVANNACWAIGELAVK RQE+SPIV  VV  L  IL+H E +NK+L+ENSAITLGRLAW
Sbjct: 723 LSVANNACWAIGELAVKVRQEVSPIVAKVVSSLGLILQHGEGVNKALVENSAITLGRLAW 782

Query: 782 VCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIA 841
           + P+LV+PHM+HFM+PWC+ALSM+RDD EKEDAFRGLCA+VK NPSG +SSLVF+C+AIA
Sbjct: 783 IRPDLVAPHMDHFMKPWCMALSMVRDDIEKEDAFRGLCAVVKVNPSGGVSSLVFICQAIA 842

Query: 842 SWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKYQV 891
           SWHEIRSE++  EV QVL+GYK ML N +W +C+SAL+PPVK++L++YQV
Sbjct: 843 SWHEIRSEDVQTEVSQVLNGYKHMLGN-SWAECLSALDPPVKERLARYQV 891
Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Involved in nuclear import of M9-containing proteins. In vitro, binds directly to the M9 region of the glycine-rich RNA-binding RBG7 and mediates its nuclear import.
Arabidopsis thaliana (taxid: 3702)
>sp|B8ARW2|TNPO1_ORYSI Transportin-1 OS=Oryza sativa subsp. indica GN=OsI_18044 PE=2 SV=1 Back     alignment and function description
>sp|B9FDR3|TNPO1_ORYSJ Transportin-1 OS=Oryza sativa subsp. japonica GN=TRN1 PE=3 SV=2 Back     alignment and function description
>sp|Q8BFY9|TNPO1_MOUSE Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2 Back     alignment and function description
>sp|Q3SYU7|TNPO1_BOVIN Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2 Back     alignment and function description
>sp|Q92973|TNPO1_HUMAN Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2 Back     alignment and function description
>sp|Q99LG2|TNPO2_MOUSE Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1 Back     alignment and function description
>sp|O14787|TNPO2_HUMAN Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3 Back     alignment and function description
>sp|O14089|IMB2_SCHPO Importin subunit beta-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap104 PE=3 SV=1 Back     alignment and function description
>sp|Q55CQ7|TNPO_DICDI Transportin OS=Dictyostelium discoideum GN=tnpo PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query902
449458638891 PREDICTED: transportin-1-like [Cucumis s 0.987 1.0 0.845 0.0
359475006896 PREDICTED: transportin-1-like [Vitis vin 0.985 0.992 0.846 0.0
224105121886 predicted protein [Populus trichocarpa] 0.981 0.998 0.845 0.0
356536398893 PREDICTED: transportin-1-like isoform 1 0.986 0.996 0.842 0.0
356536400897 PREDICTED: transportin-1-like isoform 2 0.986 0.992 0.839 0.0
224078397888 predicted protein [Populus trichocarpa] 0.978 0.994 0.849 0.0
356575454896 PREDICTED: transportin-1-like [Glycine m 0.986 0.993 0.847 0.0
79322370891 transportin 1 [Arabidopsis thaliana] gi| 0.985 0.997 0.773 0.0
23954104894 transportin [Arabidopsis thaliana] 0.985 0.994 0.770 0.0
297832284891 protein transporter [Arabidopsis lyrata 0.985 0.997 0.769 0.0
>gi|449458638|ref|XP_004147054.1| PREDICTED: transportin-1-like [Cucumis sativus] Back     alignment and taxonomy information
 Score = 1555 bits (4025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 753/891 (84%), Positives = 827/891 (92%)

Query: 1   MATSVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARA 60
           MA S +W PQE GFNEIC LLEQQISP+S  DKSQIWQQLQQYSQFPDFNNYLAFILARA
Sbjct: 1   MAASASWHPQENGFNEICGLLEQQISPTSNPDKSQIWQQLQQYSQFPDFNNYLAFILARA 60

Query: 61  EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVV 120
           EGKSVE+RQAAGLLLKNNLRTAYKSM+P  QQYIKSELLPC+GAADRHIRSTVGTI+SV+
Sbjct: 61  EGKSVEVRQAAGLLLKNNLRTAYKSMTPVFQQYIKSELLPCMGAADRHIRSTVGTIISVI 120

Query: 121 VQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI 180
           VQLGGI GW ELLQALV CLDS D NHMEGAMDALSKICEDIPQVLDSDVPGL+E PIN+
Sbjct: 121 VQLGGILGWPELLQALVRCLDSKDQNHMEGAMDALSKICEDIPQVLDSDVPGLSERPINV 180

Query: 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKL 240
           FLPRL QFFQSPH +LRKLSL SVNQ+IMLMP+AL++SMDQYLQGLF+L+ND ++EVRKL
Sbjct: 181 FLPRLFQFFQSPHATLRKLSLSSVNQYIMLMPTALYISMDQYLQGLFVLANDSTSEVRKL 240

Query: 241 VCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300
           VC AF  LIEVRP+FLEPHLRN+ EYMLQVNKD D++V+LEACEFW +Y +AQLP ENL+
Sbjct: 241 VCQAFVQLIEVRPTFLEPHLRNVIEYMLQVNKDADEEVSLEACEFWSAYCDAQLPPENLR 300

Query: 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDD 360
           EFLPRL+P LLSNM+YADDDESL+EAEED SLPDR+QDLKPRFHSSRLHGSEN EDDDDD
Sbjct: 301 EFLPRLIPALLSNMVYADDDESLLEAEEDGSLPDREQDLKPRFHSSRLHGSENAEDDDDD 360

Query: 361 IVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420
           IVN+WNLRKCSAAALD+LSNVFGD+ILP LMPV++A LSA+GDEAWK+REAAVLALGAIA
Sbjct: 361 IVNIWNLRKCSAAALDILSNVFGDDILPMLMPVVEANLSANGDEAWKEREAAVLALGAIA 420

Query: 421 EGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKV 480
           EGCI GLYPHL EIV FLIPLLDD+FPLIRSISCWTLSRFSKFIVQ IG Q G EQF+KV
Sbjct: 421 EGCITGLYPHLPEIVKFLIPLLDDRFPLIRSISCWTLSRFSKFIVQGIGTQKGYEQFDKV 480

Query: 481 LMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIV 540
           LMGLL+R+LD NKRVQEAACSAFATLEEEAAEELAP L+ ILQHL+ AFGKYQRRNLRIV
Sbjct: 481 LMGLLRRLLDNNKRVQEAACSAFATLEEEAAEELAPHLKNILQHLICAFGKYQRRNLRIV 540

Query: 541 YDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGF 600
           YDAIGTLADAVG ELNQPVYLDILMPPLIAKWQQL NSDKDLFPLLECFTSIAQALG GF
Sbjct: 541 YDAIGTLADAVGGELNQPVYLDILMPPLIAKWQQLSNSDKDLFPLLECFTSIAQALGTGF 600

Query: 601 TQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVA 660
           TQFA PV+QRCINIIQTQQ+AK++ V+AG QYD+EF+VCCLDLLSGLAEGLGSGIESLV+
Sbjct: 601 TQFAPPVYQRCINIIQTQQMAKIEPVSAGIQYDREFIVCCLDLLSGLAEGLGSGIESLVS 660

Query: 661 QSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKE 720
           QSNLRD+LLQCCMD+ASDVRQSAFALLGDL RVC VHLQ  LS+FL  AAKQL+TPKLKE
Sbjct: 661 QSNLRDLLLQCCMDEASDVRQSAFALLGDLGRVCHVHLQLLLSEFLTAAAKQLDTPKLKE 720

Query: 721 TVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLA 780
            VSVANNACWAIGELAVK RQEISP+VMTV+  LVPIL+H++ELNKSL+ENSAITLGR+A
Sbjct: 721 IVSVANNACWAIGELAVKVRQEISPVVMTVISSLVPILQHAQELNKSLVENSAITLGRIA 780

Query: 781 WVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAI 840
           WVCP+LVSPHMEHF+QPWC ALSMIRDD EKEDAFRGLCA+VK+NPSGA++SL +MC+AI
Sbjct: 781 WVCPQLVSPHMEHFIQPWCTALSMIRDDVEKEDAFRGLCALVKSNPSGAVTSLPYMCKAI 840

Query: 841 ASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKYQV 891
           ASWHEIRS++LHNEVCQVLHGYKQMLRNG WDQC+S+LEP VKDKLSKYQV
Sbjct: 841 ASWHEIRSQDLHNEVCQVLHGYKQMLRNGGWDQCISSLEPSVKDKLSKYQV 891

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359475006|ref|XP_002280484.2| PREDICTED: transportin-1-like [Vitis vinifera] gi|297744566|emb|CBI37828.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224105121|ref|XP_002313694.1| predicted protein [Populus trichocarpa] gi|222850102|gb|EEE87649.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356536398|ref|XP_003536725.1| PREDICTED: transportin-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356536400|ref|XP_003536726.1| PREDICTED: transportin-1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|224078397|ref|XP_002305534.1| predicted protein [Populus trichocarpa] gi|222848498|gb|EEE86045.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356575454|ref|XP_003555856.1| PREDICTED: transportin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|79322370|ref|NP_001031359.1| transportin 1 [Arabidopsis thaliana] gi|25083223|gb|AAN72052.1| putative transportin [Arabidopsis thaliana] gi|31711774|gb|AAP68243.1| At2g16950 [Arabidopsis thaliana] gi|330251468|gb|AEC06562.1| transportin 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|23954104|emb|CAC80068.1| transportin [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297832284|ref|XP_002884024.1| protein transporter [Arabidopsis lyrata subsp. lyrata] gi|297329864|gb|EFH60283.1| protein transporter [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query902
TAIR|locus:2039410891 TRN1 "AT2G16950" [Arabidopsis 0.985 0.997 0.729 0.0
MGI|MGI:2681523898 Tnpo1 "transportin 1" [Mus mus 0.960 0.964 0.422 3.1e-193
UNIPROTKB|F1LQP9897 Tnpo1 "Protein Tnpo1" [Rattus 0.960 0.965 0.422 3.1e-193
UNIPROTKB|Q3SYU7898 TNPO1 "Transportin-1" [Bos tau 0.960 0.964 0.422 8.3e-193
UNIPROTKB|Q92973898 TNPO1 "Transportin-1" [Homo sa 0.960 0.964 0.421 1.4e-192
UNIPROTKB|I3LM93893 TNPO1 "Uncharacterized protein 0.960 0.969 0.421 1.7e-192
UNIPROTKB|F1PRW71048 TNPO2 "Uncharacterized protein 0.960 0.826 0.424 1.1e-190
UNIPROTKB|F1SEX5887 TNPO2 "Uncharacterized protein 0.960 0.976 0.424 1.1e-190
MGI|MGI:2384849887 Tnpo2 "transportin 2 (importin 0.960 0.976 0.424 1.1e-190
UNIPROTKB|F1MBJ71037 TNPO2 "Uncharacterized protein 0.960 0.835 0.424 2.3e-190
TAIR|locus:2039410 TRN1 "AT2G16950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3413 (1206.5 bits), Expect = 0., P = 0.
 Identities = 649/890 (72%), Positives = 752/890 (84%)

Query:     2 ATSVAWQPQEQGFNEICRLLEQQISPSSTADKSXXXXXXXXXXXFPDFNNYLAFILARAE 61
             AT+V WQP++ G  EIC LLEQQISPSS  DKS           FPDFNNYL FIL RAE
Sbjct:     3 ATAVVWQPRDDGLAEICSLLEQQISPSSVVDKSQIWKQLQHFSQFPDFNNYLVFILVRAE 62

Query:    62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVV 121
             GKSVE+RQAAGLLLKNNLR AY SM+  NQ+YIKSELLPCLGAADR+IR+TVGTI+SV+V
Sbjct:    63 GKSVEVRQAAGLLLKNNLRGAYPSMTQENQKYIKSELLPCLGAADRNIRTTVGTIISVIV 122

Query:   122 QLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181
              + G++GW ELL ALVTCLDSND+NHM+GAMDALSKICEDIP VLD++VPGLAE PINIF
Sbjct:   123 NIEGVSGWHELLPALVTCLDSNDLNHMDGAMDALSKICEDIPHVLDTEVPGLAERPINIF 182

Query:   182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLV 241
             LPRLLQFFQSPH SLRKL+LGSVNQ+I++MP+AL+ S+D+YLQGLF+L+NDP  EVRKLV
Sbjct:   183 LPRLLQFFQSPHASLRKLALGSVNQYIIIMPAALYNSLDKYLQGLFVLANDPVPEVRKLV 242

Query:   242 CAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKE 301
             CAAF  L EV PS +EPHLRN+ EYMLQVN+D D++V+LEACEFW +Y +AQLP ENLKE
Sbjct:   243 CAAFVHLTEVLPSSIEPHLRNVMEYMLQVNRDPDEEVSLEACEFWSAYCDAQLPPENLKE 302

Query:   302 FLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDI 361
             FLPRL+PVLL NM YADDDESL++AEEDES PDRDQDLKPRFH+SRLHGSE+ +DDDDD 
Sbjct:   303 FLPRLIPVLLENMAYADDDESLLDAEEDESQPDRDQDLKPRFHTSRLHGSEDFDDDDDDS 362

Query:   362 VNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421
              NVWNLRKCSAAA+DVLSNVFGDEILP LMP+IQ  LSASGDEAWK REAAVLALGAIAE
Sbjct:   363 FNVWNLRKCSAAAIDVLSNVFGDEILPALMPLIQKNLSASGDEAWKQREAAVLALGAIAE 422

Query:   422 GCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481
             GC+ GLYPHLSEIVAFL+PLLDDKFPLIRSISCWTLSRF K+++Q+ G+  G EQFEKVL
Sbjct:   423 GCMNGLYPHLSEIVAFLLPLLDDKFPLIRSISCWTLSRFGKYLIQESGNPKGYEQFEKVL 482

Query:   482 MGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKYQRRNLRIVY 541
             MGLL+R+LDTNKRVQEAACS                  +ILQHLM AFGKYQRRNLRIVY
Sbjct:   483 MGLLRRLLDTNKRVQEAACSAFATVEEDAAEELVPHLGVILQHLMCAFGKYQRRNLRIVY 542

Query:   542 DAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFT 601
             DAIGTLAD+V  ELN+P YL+ILMPPL+AKWQQL NSDKDLFPLLECFTSI+QALG GF 
Sbjct:   543 DAIGTLADSVREELNKPAYLEILMPPLVAKWQQLSNSDKDLFPLLECFTSISQALGVGFA 602

Query:   602 QFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCXXXXXXXXXXXXXXXXXXVAQ 661
              FAQPVFQRC++IIQ QQLAKV+  +AGAQYD+EF+VC                   V Q
Sbjct:   603 PFAQPVFQRCMDIIQLQQLAKVNPASAGAQYDREFIVCSLDLLSGLAEGLGSGIESLVQQ 662

Query:   662 SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKET 721
             SNLRD+LL CC+D+A+DVRQSAFAL+GDLARV PV+LQ RL DFL+IA++QL+    +E 
Sbjct:   663 SNLRDLLLNCCIDEAADVRQSAFALMGDLARVFPVYLQPRLLDFLEIASQQLSANLNREN 722

Query:   722 VSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAW 781
             +SVANNACWAIGELAVK RQE+SPIV  VV  L  IL+H E +NK+L+ENSAITLGRLAW
Sbjct:   723 LSVANNACWAIGELAVKVRQEVSPIVAKVVSSLGLILQHGEGVNKALVENSAITLGRLAW 782

Query:   782 VCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIA 841
             + P+LV+PHM+HFM+PWC+ALSM+RDD EKEDAFRGLCA+VK NPSG +SSLVF+C+AIA
Sbjct:   783 IRPDLVAPHMDHFMKPWCMALSMVRDDIEKEDAFRGLCAVVKVNPSGGVSSLVFICQAIA 842

Query:   842 SWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKYQV 891
             SWHEIRSE++  EV QVL+GYK ML N +W +C+SAL+PPVK++L++YQV
Sbjct:   843 SWHEIRSEDVQTEVSQVLNGYKHMLGN-SWAECLSALDPPVKERLARYQV 891
GO:0000059 "protein import into nucleus, docking" evidence=ISS
GO:0005634 "nucleus" evidence=ISS;IDA
GO:0005643 "nuclear pore" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS;IDA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA;ISS;IDA
GO:0051170 "nuclear import" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA
GO:0052546 "cell wall pectin metabolic process" evidence=RCA
MGI|MGI:2681523 Tnpo1 "transportin 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQP9 Tnpo1 "Protein Tnpo1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SYU7 TNPO1 "Transportin-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q92973 TNPO1 "Transportin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LM93 TNPO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PRW7 TNPO2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SEX5 TNPO2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2384849 Tnpo2 "transportin 2 (importin 3, karyopherin beta 2b)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MBJ7 TNPO2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3SYU7TNPO1_BOVINNo assigned EC number0.44880.96000.9643yesno
O14089IMB2_SCHPONo assigned EC number0.37590.94450.9362yesno
Q8H0U4TNPO1_ARATHNo assigned EC number0.77300.98550.9977yesno
Q8BFY9TNPO1_MOUSENo assigned EC number0.450.96000.9643yesno
P38217IMB2_YEASTNo assigned EC number0.30540.88350.8681yesno
B8ARW2TNPO1_ORYSINo assigned EC number0.74430.98550.9988N/Ano
B9FDR3TNPO1_ORYSJNo assigned EC number0.74520.98440.9966yesno
Q92973TNPO1_HUMANNo assigned EC number0.44880.96000.9643yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_IX000149
hypothetical protein (886 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query902
COG5215858 COG5215, KAP95, Karyopherin (importin) beta [Intra 7e-21
pfam1351355 pfam13513, HEAT_EZ, HEAT-like repeat 3e-10
pfam0381071 pfam03810, IBN_N, Importin-beta N-terminal domain 1e-09
smart0091367 smart00913, IBN_N, Importin-beta N-terminal domain 2e-08
COG5215858 COG5215, KAP95, Karyopherin (importin) beta [Intra 5e-07
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information 
 Score = 98.1 bits (244), Expect = 7e-21
 Identities = 110/567 (19%), Positives = 217/567 (38%), Gaps = 79/567 (13%)

Query: 16  EICRLLEQQI-SPSSTADKSQIWQQLQ-QYSQFPDFNNYLAFILARAEGKSVEIRQAAGL 73
           E   L +  + SP   A      Q L+ Q   F  F + L  +L      + ++R  AGL
Sbjct: 5   EFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCD-LNSNDQLRMVAGL 63

Query: 74  LLKNNL-----------RTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQ 122
           +LKN+L              +  M   +++ +K   L  L + +    +    +++ + +
Sbjct: 64  ILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIAR 123

Query: 123 LGGIAG-WLELLQALV--TCLDSNDINHMEGAMDALSKICEDI-PQVLDSDVPGLAECPI 178
           +      W  L++ +V     D   ++    ++      CE   P+ L            
Sbjct: 124 MELPNSLWPGLMEEMVRNVG-DEQPVSGKCESLGICGYHCESEAPEDLIQMS-------- 174

Query: 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--------SMDQYLQGLFLLS 230
           N+ L  ++       T+   + L ++     LM S +FV          + ++Q +   +
Sbjct: 175 NVILFAIVMGALKNETTSA-VRLAALK---ALMDSLMFVQGNFCYEEERNYFMQVVCEAT 230

Query: 231 NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHSY 289
                E++       N ++ +   F++ ++ N L     +  K  +D+VA++A EFW + 
Sbjct: 231 QGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTI 290

Query: 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349
            E ++  E   ++LP                   V A+          D+ P   S    
Sbjct: 291 CEEEIDGEMEDKYLPE------------------VPAQNHGFARAAVADVLPELLSLLEK 332

Query: 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDR 409
             E+   DD      WN    +++ L + + + GD+I+  ++  ++  + +   E+W +R
Sbjct: 333 QGEDYYGDD------WNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRS---ESWANR 383

Query: 410 EAAVLALGAIAEG-CIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI 468
           EAAV+A G++  G C   L   + + +  +   + D    ++S + W     +  +   I
Sbjct: 384 EAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMII 443

Query: 469 ---GHQNGREQFEKVLMGLL---KRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIIL 522
              GH          L+GL+    R ++ + R +       A    E    LA     IL
Sbjct: 444 SPCGHLVLEVS--ASLIGLMDCPFRSINCSWRKENLVDH-IAKAVREVESFLAKFYLAIL 500

Query: 523 QHLMMAFG-KYQRRNLRI-VYDAIGTL 547
             L+          NLR+ ++ A+GTL
Sbjct: 501 NALVKGTELALNESNLRVSLFSALGTL 527

Length = 858
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat Back     alignment and domain information
>gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 902
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 100.0
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 100.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG22741005 consensus Predicted importin 9 [Intracellular traf 100.0
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 100.0
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
COG5656970 SXM1 Importin, protein involved in nuclear import 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
KOG1824 1233 consensus TATA-binding protein-interacting protein 100.0
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.96
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.96
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.94
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 99.93
COG5657947 CSE1 CAS/CSE protein involved in chromosome segreg 99.92
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 99.9
COG51011053 CRM1 Importin beta-related nuclear transport recep 99.89
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.89
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.88
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.87
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.86
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 99.83
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 99.83
KOG1242569 consensus Protein containing adaptin N-terminal re 99.8
KOG09151702 consensus Uncharacterized conserved protein [Funct 99.8
KOG2081559 consensus Nuclear transport regulator [Intracellul 99.74
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.73
KOG1242569 consensus Protein containing adaptin N-terminal re 99.72
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.71
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.66
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.66
PTZ00429746 beta-adaptin; Provisional 99.66
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.65
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 99.65
PTZ00429746 beta-adaptin; Provisional 99.65
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.64
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 99.6
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.52
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.51
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 99.5
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 99.49
COG5656970 SXM1 Importin, protein involved in nuclear import 99.44
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.44
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 99.42
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 99.39
PRK09687280 putative lyase; Provisional 99.38
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.37
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 99.36
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.35
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 99.35
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.35
PRK09687280 putative lyase; Provisional 99.32
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 99.3
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.3
KOG2020 1041 consensus Nuclear transport receptor CRM1/MSN5 (im 99.29
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.21
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 99.16
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 99.12
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 99.11
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 99.08
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 99.07
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 99.05
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 99.05
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 98.99
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.99
PF0381077 IBN_N: Importin-beta N-terminal domain; InterPro: 98.97
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.96
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.95
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.92
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.92
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 98.91
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.89
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.88
KOG0414 1251 consensus Chromosome condensation complex Condensi 98.86
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.79
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.77
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.74
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 98.72
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.66
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.65
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 98.62
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.57
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 98.55
KOG4535728 consensus HEAT and armadillo repeat-containing pro 98.53
KOG2032533 consensus Uncharacterized conserved protein [Funct 98.53
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.5
KOG2062 929 consensus 26S proteasome regulatory complex, subun 98.47
COG5096757 Vesicle coat complex, various subunits [Intracellu 98.42
KOG4535728 consensus HEAT and armadillo repeat-containing pro 98.41
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.41
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 98.4
KOG2259823 consensus Uncharacterized conserved protein [Funct 98.33
KOG2259823 consensus Uncharacterized conserved protein [Funct 98.32
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 98.3
PF05804708 KAP: Kinesin-associated protein (KAP) 98.26
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 98.26
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 98.22
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.18
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 98.17
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.15
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 98.14
KOG4653982 consensus Uncharacterized conserved protein [Funct 98.11
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.11
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 98.09
KOG0414 1251 consensus Chromosome condensation complex Condensi 98.04
KOG2956516 consensus CLIP-associating protein [General functi 98.04
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 98.04
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.01
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 98.01
KOG2956516 consensus CLIP-associating protein [General functi 97.97
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.95
PF05804708 KAP: Kinesin-associated protein (KAP) 97.93
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.92
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 97.89
PF05004309 IFRD: Interferon-related developmental regulator ( 97.89
KOG1820815 consensus Microtubule-associated protein [Cytoskel 97.85
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 97.85
PF05004309 IFRD: Interferon-related developmental regulator ( 97.77
KOG4413524 consensus 26S proteasome regulatory complex, subun 97.77
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.77
KOG2032533 consensus Uncharacterized conserved protein [Funct 97.72
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 97.69
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.69
TIGR02270410 conserved hypothetical protein. Members are found 97.68
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 97.68
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 97.65
KOG4653982 consensus Uncharacterized conserved protein [Funct 97.64
TIGR02270410 conserved hypothetical protein. Members are found 97.63
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.61
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.61
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 97.6
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.57
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.56
KOG0413 1529 consensus Uncharacterized conserved protein relate 97.53
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.52
KOG2933334 consensus Uncharacterized conserved protein [Funct 97.51
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.5
KOG2021 980 consensus Nuclear mRNA export factor receptor LOS1 97.46
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.46
KOG4413524 consensus 26S proteasome regulatory complex, subun 97.45
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 97.45
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.41
KOG1293678 consensus Proteins containing armadillo/beta-caten 97.41
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.4
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.37
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 97.29
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.29
KOG1820815 consensus Microtubule-associated protein [Cytoskel 97.26
PF08167165 RIX1: rRNA processing/ribosome biogenesis 97.23
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 97.23
KOG0413 1529 consensus Uncharacterized conserved protein relate 97.23
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.19
KOG18511710 consensus Uncharacterized conserved protein [Funct 97.18
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 97.13
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 97.13
PF08167165 RIX1: rRNA processing/ribosome biogenesis 97.05
KOG2062929 consensus 26S proteasome regulatory complex, subun 96.99
KOG1293678 consensus Proteins containing armadillo/beta-caten 96.99
KOG45241014 consensus Uncharacterized conserved protein [Funct 96.95
COG5098 1128 Chromosome condensation complex Condensin, subunit 96.93
PF13251182 DUF4042: Domain of unknown function (DUF4042) 96.85
KOG2025892 consensus Chromosome condensation complex Condensi 96.83
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 96.8
KOG2081559 consensus Nuclear transport regulator [Intracellul 96.76
COG50981128 Chromosome condensation complex Condensin, subunit 96.75
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 96.72
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 96.72
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.67
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 96.67
KOG2933334 consensus Uncharacterized conserved protein [Funct 96.62
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.56
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 96.54
KOG1410 1082 consensus Nuclear transport receptor RanBP16 (impo 96.52
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 96.51
KOG0567289 consensus HEAT repeat-containing protein [General 96.48
KOG19491005 consensus Uncharacterized conserved protein [Funct 96.46
PF13251182 DUF4042: Domain of unknown function (DUF4042) 96.44
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 96.4
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 96.34
KOG45241014 consensus Uncharacterized conserved protein [Funct 96.31
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 96.27
KOG2549576 consensus Transcription initiation factor TFIID, s 96.19
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 96.18
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 96.16
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.09
KOG1048717 consensus Neural adherens junction protein Plakoph 96.02
KOG1243690 consensus Protein kinase [General function predict 95.96
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 95.93
KOG2137700 consensus Protein kinase [Signal transduction mech 95.93
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 95.83
KOG19491005 consensus Uncharacterized conserved protein [Funct 95.82
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 95.8
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 95.78
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 95.71
KOG2137700 consensus Protein kinase [Signal transduction mech 95.54
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 95.43
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 95.39
COG5218885 YCG1 Chromosome condensation complex Condensin, su 95.28
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 95.24
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 95.23
KOG2149393 consensus Uncharacterized conserved protein [Funct 95.08
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 95.05
COG5116926 RPN2 26S proteasome regulatory complex component [ 95.04
KOG1243690 consensus Protein kinase [General function predict 94.96
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 94.92
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 94.81
KOG18371621 consensus Uncharacterized conserved protein [Funct 94.78
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 94.75
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 94.69
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 94.65
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 94.61
PF1036392 DUF2435: Protein of unknown function (DUF2435) 94.5
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 94.47
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 94.45
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 94.41
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 94.41
PF04510174 DUF577: Family of unknown function (DUF577); Inter 94.34
PF1036392 DUF2435: Protein of unknown function (DUF2435) 94.29
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 94.21
COG5116926 RPN2 26S proteasome regulatory complex component [ 94.12
KOG1048717 consensus Neural adherens junction protein Plakoph 94.0
smart00638574 LPD_N Lipoprotein N-terminal Domain. 93.99
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 93.89
KOG18511710 consensus Uncharacterized conserved protein [Funct 93.8
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 93.66
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 93.61
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 93.56
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 93.33
KOG2149393 consensus Uncharacterized conserved protein [Funct 93.31
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 93.18
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 93.03
KOG3961262 consensus Uncharacterized conserved protein [Funct 93.01
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 92.74
KOG2549576 consensus Transcription initiation factor TFIID, s 92.72
KOG2025892 consensus Chromosome condensation complex Condensi 92.62
PF1191990 DUF3437: Domain of unknown function (DUF3437); Int 92.51
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 92.39
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 92.26
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 92.06
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 91.98
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 91.93
COG5218885 YCG1 Chromosome condensation complex Condensin, su 91.76
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 91.75
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 91.72
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 90.86
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 90.74
KOG17892235 consensus Endocytosis protein RME-8, contains DnaJ 90.44
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 90.34
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 90.31
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 90.11
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 89.9
PF05536543 Neurochondrin: Neurochondrin 89.57
PF0932486 DUF1981: Domain of unknown function (DUF1981); Int 89.56
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 89.56
cd03561133 VHS VHS domain family; The VHS domain is present i 89.41
KOG0567289 consensus HEAT repeat-containing protein [General 88.87
KOG1222791 consensus Kinesin associated protein KAP [Intracel 88.85
KOG3961262 consensus Uncharacterized conserved protein [Funct 88.71
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 88.31
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 88.24
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 88.17
PF1191990 DUF3437: Domain of unknown function (DUF3437); Int 87.2
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 87.15
smart00638574 LPD_N Lipoprotein N-terminal Domain. 86.51
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 85.88
KOG4199461 consensus Uncharacterized conserved protein [Funct 85.85
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 85.84
cd03561133 VHS VHS domain family; The VHS domain is present i 85.68
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 85.66
KOG1222791 consensus Kinesin associated protein KAP [Intracel 85.56
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 85.54
KOG18481610 consensus Uncharacterized conserved protein [Funct 84.78
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 84.7
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 84.44
PF04388 668 Hamartin: Hamartin protein; InterPro: IPR007483 Th 84.2
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 84.19
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 84.08
PF14631 1426 FancD2: Fanconi anaemia protein FancD2 nuclease; P 84.07
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 83.72
COG5657 947 CSE1 CAS/CSE protein involved in chromosome segreg 83.72
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 82.75
KOG09291514 consensus Guanine nucleotide exchange factor [Intr 82.7
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 82.6
PF12783168 Sec7_N: Guanine nucleotide exchange factor in Golg 82.23
PF12333102 Ipi1_N: Rix1 complex component involved in 60S rib 82.19
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 81.93
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 81.82
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 81.73
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 81.64
PF12333102 Ipi1_N: Rix1 complex component involved in 60S rib 81.59
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 81.57
PF04388668 Hamartin: Hamartin protein; InterPro: IPR007483 Th 81.09
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 80.63
PF03542356 Tuberin: Tuberin; InterPro: IPR018515 Initiation o 80.63
PF08161198 NUC173: NUC173 domain; InterPro: IPR012978 This is 80.27
PF04510174 DUF577: Family of unknown function (DUF577); Inter 80.23
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-140  Score=1073.03  Aligned_cols=871  Identities=55%  Similarity=0.951  Sum_probs=826.3

Q ss_pred             CCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhh
Q 002596            4 SVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY   83 (902)
Q Consensus         4 ~~~~~~~~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w   83 (902)
                      +|.|+|++++++|+.++|++++|||++ +|+.+...++++...|+|.+||++||...++.+..+|++||++|||.++.+|
T Consensus         2 ~~~w~p~e~~l~ql~~lLk~s~Spn~~-~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~   80 (885)
T KOG2023|consen    2 AMTWQPDEQGLQQLAQLLKNSQSPNSE-TRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHY   80 (885)
T ss_pred             CCCCcccHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccc
Confidence            579999999999999999999999999 9999999999999999999999999998888899999999999999999999


Q ss_pred             ccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhch
Q 002596           84 KSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP  163 (902)
Q Consensus        84 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~  163 (902)
                      ..++++...++|..+++++.++++.||.+.+.++++|+...+...||+++|.|.+++.+++....++|+.+|.+|||+..
T Consensus        81 ~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa  160 (885)
T KOG2023|consen   81 NSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSA  160 (885)
T ss_pred             cCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002596          164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA  243 (902)
Q Consensus       164 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~  243 (902)
                      +.+++++.   .++++.++|+++++++++++.+|..|+.|++.++-..++.+..+++.|++.+|.+.+|.+++||+.+|.
T Consensus       161 ~~lds~~~---~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~  237 (885)
T KOG2023|consen  161 QFLDSDVL---TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCR  237 (885)
T ss_pred             HHHhhhcc---cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence            98887654   478999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhh
Q 002596          244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL  323 (902)
Q Consensus       244 ~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~  323 (902)
                      +|+.+.+..++.+.||++.++++|++..++.|++|+.+|||||.++++.+.....+.||+++++|.++..|.|+++|+-.
T Consensus       238 alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~L  317 (885)
T KOG2023|consen  238 ALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIIL  317 (885)
T ss_pred             HHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHH
Confidence            99999999999999999999999999999999999999999999999999889999999999999999999999999988


Q ss_pred             hh-hhccCCCCCCCCCCCcccccccCCCCC-------CCCC--CCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHH
Q 002596          324 VE-AEEDESLPDRDQDLKPRFHSSRLHGSE-------NPED--DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPV  393 (902)
Q Consensus       324 ~~-~~~~~~~~~~~~~i~p~~~~~~~~~~~-------~~~~--dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~  393 (902)
                      .+ .++|+.++|++++|||+|++.+..|..       ++||  ||||...+|++|+|++.+|+.++..+|+++++.++|+
T Consensus       318 L~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~Pl  397 (885)
T KOG2023|consen  318 LKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPL  397 (885)
T ss_pred             hcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHH
Confidence            86 557789999999999999998765441       1121  3455667899999999999999999999999999999


Q ss_pred             HHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcc
Q 002596          394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG  473 (902)
Q Consensus       394 l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  473 (902)
                      +.+.+.+++   |.+||++++++|+|+|||.+.+.+|++.++|++++.|+|..|.||+.+||+|+||+.|....    ..
T Consensus       398 Lk~~L~~~~---W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~----~~  470 (885)
T KOG2023|consen  398 LKEHLSSEE---WKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD----SR  470 (885)
T ss_pred             HHHHcCcch---hhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC----Ch
Confidence            999999988   99999999999999999999999999999999999999999999999999999999998753    35


Q ss_pred             hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcc
Q 002596          474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF  553 (902)
Q Consensus       474 ~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~  553 (902)
                      .+|+.+++..++..+-|.+++||++||+|++.+.+.+++.+.||+..|+..+..+++.++.+++..+++||+++++++|.
T Consensus       471 ~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~  550 (885)
T KOG2023|consen  471 DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGH  550 (885)
T ss_pred             HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCchhhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHH--HhhcccccCCC
Q 002596          554 ELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQL--AKVDSVAAGAQ  631 (902)
Q Consensus       554 ~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~--~~~~~~~~~~e  631 (902)
                      .+.+|.|++.+||+|+++|+...++|+++.+++||++.++.++|.+|.||++.++++++.+++...+  .+...+...+.
T Consensus       551 ~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~  630 (885)
T KOG2023|consen  551 ALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEA  630 (885)
T ss_pred             hcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999996533  23344455566


Q ss_pred             CchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHH
Q 002596          632 YDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAK  711 (902)
Q Consensus       632 ~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~  711 (902)
                      ||++++++++|+++++++++|+++++++.++.+..+++.|++|+.++|||++|.++|++++.|.+.+.|++..+++.+..
T Consensus       631 pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~  710 (885)
T KOG2023|consen  631 PDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGA  710 (885)
T ss_pred             CCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhh
Confidence            79999999999999999999999999998888999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCccchhHhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcCh
Q 002596          712 QLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHM  791 (902)
Q Consensus       712 ~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l  791 (902)
                      ++..+    +.++++||+||+|+++.+.+...++|+..++..|+-+++.+. .+..+.||.+.++||+++.+|+.++|++
T Consensus       711 Nl~~~----~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~-~~~tllENtAITIGrLg~~~Pe~vAp~l  785 (885)
T KOG2023|consen  711 NLNPE----NISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQN-TPKTLLENTAITIGRLGYICPEEVAPHL  785 (885)
T ss_pred             cCChh----hchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccC-chHHHHHhhhhhhhhhhccCHHhcchhH
Confidence            99888    779999999999999999999999999999999999999876 3789999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHcCchhhhhhHHHHhhHhhcccccCcHHHHHHHHHHHHHHHhhcChhhH
Q 002596          792 EHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAW  871 (902)
Q Consensus       792 ~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p~~~~~~l~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  871 (902)
                      +.++.+||..+....|++||..||+|+|.+|..||.++...+..||++|++|.++. ++++.+++++++++|.++|+.+|
T Consensus       786 ~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~np~-~~l~~~f~kiL~g~k~qvg~~nW  864 (885)
T KOG2023|consen  786 DSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWSNPE-DDLRDEFYKILQGFKNQVGKINW  864 (885)
T ss_pred             HHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhcccChH-HHHHHHHHHHHHHHHHHhhhhhH
Confidence            99999999999999999999999999999999999999999999999999999754 78999999999999999998899


Q ss_pred             HHHHhcCCHHHHHHHhh-ccc
Q 002596          872 DQCMSALEPPVKDKLSK-YQV  891 (902)
Q Consensus       872 ~~~~~~l~~~~~~~l~~-y~~  891 (902)
                      +++..+|||..+.+|.. ||+
T Consensus       865 ~~~~~qf~P~~~erl~a~y~v  885 (885)
T KOG2023|consen  865 QRFSEQFPPPLKERLQAFYGV  885 (885)
T ss_pred             HHHhhcCChhHHHHHHHHhCC
Confidence            99999999999999965 985

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG1848 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal Back     alignment and domain information
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ] Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ] Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH Back     alignment and domain information
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] Back     alignment and domain information
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query902
2qmr_A890 Karyopherin Beta2TRANSPORTIN Length = 890 0.0
2h4m_A865 Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 0.0
1qbk_B890 Structure Of The Karyopherin Beta2-ran Gppnhp Nucle 0.0
2ot8_A852 Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Len 0.0
1ukl_A876 Crystal Structure Of Importin-Beta And Srebp-2 Comp 3e-14
1ibr_D462 Complex Of Ran With Importin Beta Length = 462 8e-14
1m5n_S485 Crystal Structure Of Heat Repeats (1-11) Of Importi 1e-13
1f59_A442 Importin-Beta-Fxfg Nucleoporin Complex Length = 442 1e-13
2p8q_A876 Crystal Structure Of Human Importin Beta Bound To T 2e-13
1qgk_A876 Structure Of Importin Beta Bound To The Ibb Domain 2e-13
1gcj_A460 N-Terminal Fragment Of Importin-Beta Length = 460 3e-12
2bpt_A861 Structure Of The Nup1p:kap95p Complex Length = 861 5e-12
3nd2_A861 Structure Of Yeast Importin-Beta (Kap95p) Length = 6e-12
2qna_A762 Crystal Structure Of Human Importin-Beta (127-876) 3e-08
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN Length = 890 Back     alignment and structure 
Iteration: 1

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/900 (41%), Positives = 553/900 (61%), Gaps = 34/900 (3%)
Query: 7   WQPQEQGFNEICRLLEQQISPSSTADKSXXXXXXXXXXXFPDFNNYLAFILARAEGKSVE 66
           W+P EQG  +I +LL++  SP +T  ++           +PDFNNYL F+L + + +   
Sbjct: 5   WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDFNNYLIFVLTKLKSEDEP 63
Query: 67  IRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126
            R  +GL+LKNN++  +++       +IKSE L  +G +   IR+TVG +++ +   G +
Sbjct: 64  TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL 123
Query: 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186
             W +LL  L + LDS D N  EGA  AL KICED  ++LDSDV    + P+NI +P+ L
Sbjct: 124 QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV---LDRPLNIMIPKFL 180
Query: 187 QFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246
           QFF+     +R  ++  VNQFI+    AL + +D +++ LF L+ D   EVRK VC A  
Sbjct: 181 QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALV 240
Query: 247 LLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL 306
           +L+EVR   L PH+ N+ EYMLQ  +D D++VALEACEFW +  E  +  + L   LP+L
Sbjct: 241 MLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL 300
Query: 307 VPVLLSNMIYADDDESLVEA--EEDESLPDRDQDLKPRFHSSRLHGSEN----------- 353
           +PVL++ M Y+D D  L++   EEDE++PD +QD++PRFH SR    ++           
Sbjct: 301 IPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDD 360
Query: 354 -PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAA 412
             E DDDD ++ WNLRKCSAAALDVL+NV+ DE+LP ++P+++  L       W  +E+ 
Sbjct: 361 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---HHEWVVKESG 417
Query: 413 VLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQN 472
           +L LGAIAEGC++G+ P+L E++  LI  L DK  L+RSI+CWTLSR++ ++V     Q 
Sbjct: 418 ILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS----QP 473
Query: 473 GREQFEKVLMGLLKRILDTNKRVQEAACSXXXXXXXXXXXXXXXXXXIILQHLMMAFGKY 532
                + ++  LLKRILD+NKRVQEAACS                   IL  L+ AF KY
Sbjct: 474 PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY 533
Query: 533 QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSI 592
           Q +NL I+YDAIGTLAD+VG  LN+P Y+ +LMPPLI KW  L + DKDLFPLLEC +S+
Sbjct: 534 QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSV 593
Query: 593 AQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQY---DKEFVVCCXXXXXXXXX 649
           A AL +GF  + +PV+QRC+N++Q      + + A   QY   DK+F++           
Sbjct: 594 ATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAE 653
Query: 650 XXXXXXXXXVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIA 709
                    VA+SN+  ++ QC  D   +VRQS+FALLGDL + C  H++  ++DF+ I 
Sbjct: 654 GLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPIL 713
Query: 710 AKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLI 769
              LN     E +SV NNA WAIGE++++   E+ P +  V+  LV I+       K+L+
Sbjct: 714 GTNLN----PEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT-PKTLL 768
Query: 770 ENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGA 829
           EN+AIT+GRL +VCP+ V+P ++ F++PWC +L  IRD+ EK+ AFRG+C M+  NPSG 
Sbjct: 769 ENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGV 828
Query: 830 LSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKY 889
           +   +F C A+ASW   + ++L +  C++LHG+K  + +  W +       P+K++L+ +
Sbjct: 829 IQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAF 887
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 Back     alignment and structure
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 890 Back     alignment and structure
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Length = 852 Back     alignment and structure
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex Length = 876 Back     alignment and structure
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta Length = 462 Back     alignment and structure
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound To The Non-Classical Nls(67-94) Of Pthrp Length = 485 Back     alignment and structure
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex Length = 442 Back     alignment and structure
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The Snurportin1 Ibb- Domain Length = 876 Back     alignment and structure
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha Length = 876 Back     alignment and structure
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta Length = 460 Back     alignment and structure
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex Length = 861 Back     alignment and structure
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p) Length = 861 Back     alignment and structure
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In Complex With The Ibb-Domain Of Snurportin1 (1-65) Length = 762 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query902
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 0.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 1e-126
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 1e-25
1qgr_A876 Protein (importin beta subunit); transport recepto 1e-119
1qgr_A876 Protein (importin beta subunit); transport recepto 2e-28
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 7e-75
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 3e-06
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 6e-06
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 1e-47
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 3e-07
2x19_B963 Importin-13; nuclear transport, protein transport; 1e-46
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 5e-46
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 9e-17
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 3e-15
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 2e-12
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 8e-12
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 6e-43
2x1g_F971 Cadmus; transport protein, developmental protein, 4e-39
2x1g_F 971 Cadmus; transport protein, developmental protein, 6e-04
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 5e-36
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 2e-29
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-17
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-11
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-05
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 1e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 5e-09
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 9e-09
2db0_A253 253AA long hypothetical protein; heat repeats, hel 3e-06
2db0_A253 253AA long hypothetical protein; heat repeats, hel 8e-06
2db0_A253 253AA long hypothetical protein; heat repeats, hel 6e-04
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 6e-06
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 7e-06
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 3e-05
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 7e-05
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 5e-04
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 5e-04
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 1e-04
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 5e-04
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
 Score =  714 bits (1844), Expect = 0.0
 Identities = 390/892 (43%), Positives = 565/892 (63%), Gaps = 45/892 (5%)

Query: 4   SVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGK 63
              W+P EQG  +I +LL++  SP +T  +  + Q+L+Q +Q+PDFNNYL F+L + + +
Sbjct: 2   EYEWKPDEQGLQQILQLLKESQSPDTTIQR-TVQQKLEQLNQYPDFNNYLIFVLTKLKSE 60

Query: 64  SVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQL 123
               R  +GL+LKNN++  +++       +IKSE L  +G +   IR+TVG +++ +   
Sbjct: 61  DEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASK 120

Query: 124 GGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183
           G +  W +LL  L + LDS D N  EGA  AL KICED  ++LDSDV    + P+NI +P
Sbjct: 121 GELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV---LDRPLNIMIP 177

Query: 184 RLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243
           + LQFF+     +R  ++  VNQFI+    AL + +D +++ LF L+ D   EVRK VC 
Sbjct: 178 KFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCR 237

Query: 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL 303
           A  +L+EVR   L PH+ N+ EYMLQ  +D D++VALEACEFW +  E  +  + L   L
Sbjct: 238 ALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHL 297

Query: 304 PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVN 363
           P+L+PVL++ M Y+D D  L++ + +                             DD ++
Sbjct: 298 PKLIPVLVNGMKYSDIDIILLKGDVEG------------------------GSGGDDTIS 333

Query: 364 VWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC 423
            WNLRKCSAAALDVL+NV+ DE+LP ++P+++  L       W  +E+ +L LGAIAEGC
Sbjct: 334 DWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---HHEWVVKESGILVLGAIAEGC 390

Query: 424 IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483
           ++G+ P+L E++  LI  L DK  L+RSI+CWTLSR++ ++V            + ++  
Sbjct: 391 MQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT----YLKPLMTE 446

Query: 484 LLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDA 543
           LLKRILD+NKRVQEAACSAFATLEEEA  EL P L  IL  L+ AF KYQ +NL I+YDA
Sbjct: 447 LLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA 506

Query: 544 IGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQF 603
           IGTLAD+VG  LN+P Y+ +LMPPLI KW  L + DKDLFPLLEC +S+A AL +GF  +
Sbjct: 507 IGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY 566

Query: 604 AQPVFQRCINIIQTQQLAKVDSVAAGAQYD---KEFVVCCLDLLSGLAEGLGSGIESLVA 660
            +PV+QRC+N++Q      + + A   QY+   K+F++  LDLLSGLAEGLG  IE LVA
Sbjct: 567 CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVA 626

Query: 661 QSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKE 720
           +SN+  ++ QC  D   +VRQS+FALLGDL + C  H++  ++DF+ I    LN     E
Sbjct: 627 RSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNP----E 682

Query: 721 TVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLA 780
            +SV NNA WAIGE++++   E+ P +  V+  LV I+       K+L+EN+AIT+GRL 
Sbjct: 683 FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRP-NTPKTLLENTAITIGRLG 741

Query: 781 WVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAI 840
           +VCP+ V+P ++ F++PWC +L  IRD+ EK+ AFRG+C M+  NPSG +   +F C A+
Sbjct: 742 YVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAV 801

Query: 841 ASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKL-SKYQV 891
           ASW     ++L +  C++LHG+K  + +  W +       P+K++L + Y V
Sbjct: 802 ASWINP-KDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV 852
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 902
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 0.0
d1wa5c_959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 1e-80
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 4e-75
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 3e-64
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 1e-53
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 1e-04
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 3e-22
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 8e-14
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-13
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 3e-12
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 8e-12
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-11
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 9e-13
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 6e-10
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 4e-07
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 0.002
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  612 bits (1578), Expect = 0.0
 Identities = 407/903 (45%), Positives = 585/903 (64%), Gaps = 35/903 (3%)

Query: 7   WQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVE 66
           W+P EQG  +I +LL++  SP  T  +  + Q+L+Q +Q+PDFNNYL F+L + + +   
Sbjct: 3   WKPDEQGLQQILQLLKESQSPD-TTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP 61

Query: 67  IRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126
            R  +GL+LKNN++  +++       +IKSE L  +G +   IR+TVG +++ +   G +
Sbjct: 62  TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL 121

Query: 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186
             W +LL  L + LDS D N  EGA  AL KICED  ++LDSD   + + P+NI +P+ L
Sbjct: 122 QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD---VLDRPLNIMIPKFL 178

Query: 187 QFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246
           QFF+     +R  ++  VNQFI+    AL + +D + + LF L+ D   EVRK VC A  
Sbjct: 179 QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALV 238

Query: 247 LLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL 306
           +L+EVR   L PH+ N+ EYMLQ  +D D++VALEACEFW +  E  +  + L   LP+L
Sbjct: 239 MLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL 298

Query: 307 VPVLLSNMIYADDDESL--VEAEEDESLPDRDQDLKPRFHSSRLHG------------SE 352
           +PVL++ M Y+D D  L   + EEDE++PD +QD++PRFH SR                +
Sbjct: 299 IPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDD 358

Query: 353 NPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAA 412
           + E DDDD ++ WNLRKCSAAALDVL+NV+ DE+LP ++P+++  L       W  +E+ 
Sbjct: 359 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE---WVVKESG 415

Query: 413 VLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQN 472
           +L LGAIAEGC++G+ P+L E++  LI  L DK  L+RSI+CWTLSR++ ++V       
Sbjct: 416 ILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY 475

Query: 473 GREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532
                + ++  LLKRILD+NKRVQEAACSAFATLEEEA  EL P L  IL  L+ AF KY
Sbjct: 476 ----LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY 531

Query: 533 QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSI 592
           Q +NL I+YDAIGTLAD+VG  LN+P Y+ +LMPPLI KW  L + DKDLFPLLEC +S+
Sbjct: 532 QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSV 591

Query: 593 AQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQY---DKEFVVCCLDLLSGLAE 649
           A AL +GF  + +PV+QRC+N++Q      + + A   QY   DK+F++  LDLLSGLAE
Sbjct: 592 ATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAE 651

Query: 650 GLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIA 709
           GLG  IE LVA+SN+  ++ QC  D   +VRQS+FALLGDL + C  H++  ++DF+ I 
Sbjct: 652 GLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPIL 711

Query: 710 AKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLI 769
              LN     E +SV NNA WAIGE++++   E+ P +  V+  LV I+       K+L+
Sbjct: 712 GTNLN----PEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINR-PNTPKTLL 766

Query: 770 ENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGA 829
           EN+AIT+GRL +VCP+ V+P ++ F++PWC +L  IRD+ EK+ AFRG+C M+  NPSG 
Sbjct: 767 ENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGV 826

Query: 830 LSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSK- 888
           +   +F C A+ASW   + ++L +  C++LHG+K  + +  W +       P+K++L+  
Sbjct: 827 IQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAF 885

Query: 889 YQV 891
           Y V
Sbjct: 886 YGV 888
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query902
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 100.0
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 100.0
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 100.0
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.96
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.92
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.92
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.91
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.82
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.78
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.78
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.76
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.76
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.75
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.71
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.71
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.48
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.33
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.31
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.2
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.95
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.87
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.0
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.99
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 96.85
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 96.35
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 96.29
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 96.11
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 95.82
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 94.67
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 92.67
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 91.59
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=850.11  Aligned_cols=868  Identities=47%  Similarity=0.859  Sum_probs=781.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             88889654999999999711999988899999999975349991879999852047889899999999999977752155
Q 002596            6 AWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS   85 (902)
Q Consensus         6 ~~~~~~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~   85 (902)
                      +||||+++++++.++|++++|||++ +|++|+++|+++++.|+|+.+|..++....+.+..+|++|++.|||.+.++|..
T Consensus         2 ~~~p~~~~l~ql~~~L~~~~s~d~~-~r~~A~~~L~~~~~~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~   80 (888)
T d1qbkb_           2 EWKPDEQGLQQILQLLKESQSPDTT-IQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQN   80 (888)
T ss_dssp             CSHHHHTTHHHHHHHHTTCCHHHHH-HHHHHTTSTTTSTTSTTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999869999999999976397999-999999999997739989999999997457999899999999999999870023


Q ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHC
Q ss_conf             99758999999885553169967999999999999850376955899999999722699356639999999998306110
Q 002596           86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV  165 (902)
Q Consensus        86 l~~~~~~~i~~~ll~~l~~~~~~vR~~~a~~i~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~  165 (902)
                      ++++.+..||+.++.+|.+++..+|+.++.+++.|++.++++.||++++.|.+.+.++++.++++++.+|+.++++....
T Consensus        81 ~~~~~~~~Ik~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~  160 (888)
T d1qbkb_          81 FPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI  160 (888)
T ss_dssp             STTTCCHHHHHHHTTGGGCCCSSTTTTTTTTTHHHHTTTSSCSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHH
T ss_pred             CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999998299889999999999999987182112999999999867999899999999999999986887


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             03579998876135249999987049999999999999999850163466995999999999850799878999999999
Q 002596          166 LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAF  245 (902)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~a~~~l  245 (902)
                      +..+.   .....+.++|.++++++++++.+|..|+.+++.++...+..+...++.+++.++....+++.++|..++++|
T Consensus       161 ~~~~~---~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l  237 (888)
T d1qbkb_         161 LDSDV---LDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRAL  237 (888)
T ss_dssp             HHTC------CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTT
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             60778---887999999999998638888999999998777887403889999999999888760793067799999999


Q ss_pred             HHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             99994471215565999999998640699888999998899995305774123776543369999831147813355532
Q 002596          246 NLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVE  325 (902)
Q Consensus       246 ~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~  325 (902)
                      ..+.+..++.+.+|++.++++++..+.+.+++++..|++||..+++.+.....+.++++.++|.++..|.+.+.+.....
T Consensus       238 ~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~  317 (888)
T d1qbkb_         238 VMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLK  317 (888)
T ss_dssp             TTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             98998767888998887899999862898689999889999999971645899999999999999987421268899885


Q ss_pred             H--HCCCCCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             1--01488988777887432224678999------------999987300000328999999999999660965055168
Q 002596          326 A--EEDESLPDRDQDLKPRFHSSRLHGSE------------NPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLM  391 (902)
Q Consensus       326 ~--~~~~~~~~~~~~i~p~~~~~~~~~~~------------~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~il  391 (902)
                      .  ..++..++..++++|.+...+.....            +.+.++++....|++|+++..+++.++..+|+.+++.++
T Consensus       318 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l  397 (888)
T d1qbkb_         318 GDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHIL  397 (888)
T ss_dssp             TTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             54665442142577778899999999987401112102310344544300113369999999876676512999999999


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99998650389873577899999999987300452552199999999610599985799999999986498876520687
Q 002596          392 PVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQ  471 (902)
Q Consensus       392 ~~l~~~l~~~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~ii~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~  471 (902)
                      +.+.+.+.+++   |+.|++|++++|.+++++.+.+.++++++++.+++.++|+++.||.+++|++|++++++...    
T Consensus       398 ~~l~~~l~s~~---~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~----  470 (888)
T d1qbkb_         398 PLLKELLFHHE---WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ----  470 (888)
T ss_dssp             HHHHHTTTSSS---HHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSS----
T ss_pred             HHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH----
T ss_conf             99887512205---68999999986435555787742120355679998426998999999999999999986654----


Q ss_pred             CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             51334999999999996299989999999999999998134523769999999999870000356999999999999983
Q 002596          472 NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV  551 (902)
Q Consensus       472 ~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~  551 (902)
                      ....++..+++.++..+.|++++|+.+||++|..+++.++..+.||++.+++.+..+++.++.+++..+++++++++..+
T Consensus       471 ~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~  550 (888)
T d1qbkb_         471 PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV  550 (888)
T ss_dssp             CHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             15655455589999884289878999899999999987553113579999999999986003779999999999999862


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH----HHCCCC
Q ss_conf             5568961136421499999996099998651459999999999834244453088999999999999998----533663
Q 002596          552 GFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLA----KVDSVA  627 (902)
Q Consensus       552 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~----~~~~~~  627 (902)
                      +..+..++|++.+++.+...|....++++....+++|++.++..+|..|.||.+++++.+++.+......    ...++.
T Consensus       551 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  630 (888)
T d1qbkb_         551 GHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ  630 (888)
T ss_dssp             GGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             31013367999999999999975121068899999999999998678776569999999998899899999987416201


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf             57977325899786668999998844188630200399999998269995899999999979986565766873999999
Q 002596          628 AGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLD  707 (902)
Q Consensus       628 ~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~il~  707 (902)
                       ...++.+++.+++++++.+++++|..+.+++.+..+++++..++++.++++|++++.++|+++..++..+.||++.+++
T Consensus       631 -~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~  709 (888)
T d1qbkb_         631 -YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMP  709 (888)
T ss_dssp             -SCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -1000688999999998889987305666666585699999999679976899999999887787516877877999999


Q ss_pred             HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99984199998663447545999999999860001226899999999996038801223288889999988863457865
Q 002596          708 IAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELV  787 (902)
Q Consensus       708 ~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  787 (902)
                      .+.+.++++    ...++.+|+|++|+++.+.++++.||++.+++.|++++++++ .++.+++|++.|+||++..+|+.+
T Consensus       710 ~l~~~L~~~----~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~-~~~~v~~n~~~~lgrl~~~~p~~~  784 (888)
T d1qbkb_         710 ILGTNLNPE----FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN-TPKTLLENTAITIGRLGYVCPQEV  784 (888)
T ss_dssp             HHHHTCCGG----GHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTT-CCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHCHHHH
T ss_conf             999873867----789999999999999998779865059999999999876998-637899999999999998797988


Q ss_pred             CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             76767889999976018999078899999999999709312454179985583113435817799999999999993128
Q 002596          788 SPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLR  867 (902)
Q Consensus       788 ~~~l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~  867 (902)
                      .|+++++++.||.+|+..+|++||..+|+|+|.+++.||+++.++++.||+++++|.+ +.+++++++.++++.+|+.+|
T Consensus       785 ~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~~~-~~~~~~~~~~~~l~~~~~~~~  863 (888)
T d1qbkb_         785 APMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWIN-PKDDLRDMFCKILHGFKNQVG  863 (888)
T ss_dssp             GGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHTTCSS-CCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHCC
T ss_conf             8649999999999726379818999999999999997849888779999999970379-978999999999999998769


Q ss_pred             HHHHHHHHHCCCHHHHHHHHH-CCC
Q ss_conf             355999982199889999942-022
Q 002596          868 NGAWDQCMSALEPPVKDKLSK-YQV  891 (902)
Q Consensus       868 ~~~~~~~~~~~~~~~~~~l~~-y~~  891 (902)
                      ++.|+++++++||.++++|+. ||+
T Consensus       864 ~~~w~~~~~~~~~~~~~~l~~~y~~  888 (888)
T d1qbkb_         864 DENWRRFSDQFPLPLKERLAAFYGV  888 (888)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHCC-
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf             2759999975999999999986292
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure