Citrus Sinensis ID: 002598

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900--
MMDHKPWLWRKKSSEKTIIATDKLDLSLKGNEAEMQILLTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSKGRKIMEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASALISESEHLRSGKQREPPFCRTVGASDISLMDDFVEMERLAIVSVNKPDGTSHVSPIRANAIVGPLETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWLQEILELILEQNHVTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNNLHKSNSPHFSSVTDAEISLSEKNQQFHSDLSKSIRKIAELIEKINLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYFSHKKELPSNESEPGSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLER
cccccccccccHHHHccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcccccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHccccccccccccccccHHHccccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccccccccEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHcHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHcccccccccccccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHcHHHHHHcccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccHccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcc
mmdhkpwlwrkkssektiiatdkldlslkgNEAEMQILLTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEilgrespetrrkrlnssplgsmvdsafdnppdtpskRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSKGrkimepsrtsIMSYELSLTsmsdigsddkvnCAESRASALISESehlrsgkqreppfcrtvgasdisLMDDFVEMERLAIVsvnkpdgtshvspiranaivgpletessghspatigeeifrvpehqadfgvlnreiksrdiliGKFPSWLQEILELILEQnhvtnrhpykILEDVRDALVYIdhqsthqlvdtressnnlhksnsphfssvtdaeislseknqqFHSDLSKSIRKIAELIEKInltspeygllenlskkdgsvisykntapsgyMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFslqdvssmKDEIKkhfdwdevrseseAEVGMVYqfteadglhlprgqssclptfavanghyfshkkelpsnesepgsefinveagnkVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLER
mmdhkpwlwrkkssektiiatdkldlslkgnEAEMQILLTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQrtqaeadsnaLMVRldstekenaslkyevrvlgkeleirneerefnrrtadeshkqhlesVKKIAKLESECQRLRVLvrkrlpgpaalakmkneveilgrespetrrkrlnssplgsmvdsafdnppdtpsKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEElskgrkimepsrTSIMSYELSLTSMSDIGSDDKVNCAESRASALisesehlrsgkqreppfcrTVGASDISLMDDFVEMERLAIVSvnkpdgtshvsPIRANAIVGPLETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWLQEILELILEQNHVTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNNLHKSNSPHFSSVTDAEISLSEKNQQFHSDLSKSIRKIAELIEKInltspeygllENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYFSHKKELPSNESEPGSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLER
MMDHKPWLWRKKSSEKTIIATDKLDLSLKGNEAEMQILLTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKeleirneerefnrrTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSKGRKIMEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASALISESEHLRSGKQREPPFCRTVGASDISLMDDFVEMERLAIVSVNKPDGTSHVSPIRANAIVGPLETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWlqeilelileqNHVTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNNLHKSNSPHFSSVTDAEISLSEKNQQFHSDLSKSIRKIAELIEKINLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYFSHKKELPSNESEPGSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNcceeleatclelqlqleR
*******LW*******TIIATDKLDLSLKG**AEMQILLTDKAELENDVKNLNDKLFSALAECNAK********************************************RLIHLDAALKECMDQLHFVRE*****IH*AV******F*QSLMILEEKL*****RLAKLGVENTHLTKALLAKEKLI**********************************VRV***************************************CQRLRVLVRK*********************************************************************************************************************************************************************FCRTVGASDISLMDDFVEMERLAIVSVN*******************************IGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWLQEILELILEQNHVTNRHPYKILEDVRDALVYIDHQ***********************************************IRKIAELIEKINLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDVSSMKDEIKKHFDWDEVR***EAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYF*****************************CLV****************************************VKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLEL******
*MDHKPWLWR*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LQLQL**
MMDHKPWLWRKKSSEKTIIATDKLDLSLKGNEAEMQILLTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAIT***********LKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREF**************SVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSKGRKIMEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASALI************EPPFCRTVGASDISLMDDFVEMERLAIVSVNKPDGTSHVSPIRANAIVGPLETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWLQEILELILEQNHVTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNNLHKSNSPHFSSVTDAEISLSEKNQQFHSDLSKSIRKIAELIEKINLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYFSHK************EFINVEAGNKVRQECLVSAIDKSNS*************NSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLER
*****P********************************LTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEV*I********************************PSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELS**********************************************EHLRSGKQ***********SDISLMDDFVEMERLAIVSVN****************************************************I*SRDILIGKFPSWLQEILELILEQNHVTNRHPYKILEDVRDALVYIDH*********************************LSEKNQQFHSDLSKSIRKIAELIEKINLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDVSSMKDEIKKHFDWDEV***********YQ**EADGLHLPRGQSSCLPTFAVANGHYFSHKKELPSNESEPGSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQL**
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MMDHKPWLWRKKSSEKTIIATDKLDLSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCNAKDDLVKKHAKMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSxxxxxxxxxxxxxxxxxxxxxNTHLTKALLAKEKLIEDLGKQxxxxxxxxxxxxxxxxxxxxxNASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRxxxxxxxxxxxxxxxxxxxxxxxxxxxxLQFSRTMxxxxxxxxxxxxxxxxxxxxxRKIMEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASALISESEHLRSGKQREPPFCRTVGASDISLMDDFVEMERLAIVSVNKPDGTSHVSPIRANAIVGPLETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWLQEILELILEQNHVTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNNLHKSNSPHFSSVTDAEISLSEKNQQFHSDLSKSIRKIAELIEKINLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYFSHKKELPSNESEPGSEFINVEAGNKVRQECLVSAIDKSNSLMSQxxxxxxxxxxxxxxxxxxxxxxxxxxxxVKLQKMINEDLDTQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCLELQLQLER
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query902 2.2.26 [Sep-21-2011]
Q9SLN1898 Filament-like plant prote yes no 0.742 0.746 0.470 1e-166
Q0WSY2982 Filament-like plant prote no no 0.528 0.485 0.393 5e-78
Q9C6981054 Filament-like plant prote no no 0.466 0.399 0.395 3e-68
O65649996 Filament-like plant prote no no 0.512 0.463 0.361 3e-64
Q9CAP9779 Filament-like plant prote no no 0.219 0.254 0.403 4e-35
Q9MA92615 Filament-like plant prote no no 0.293 0.430 0.343 1e-33
Q8LLE5582 Filament-like plant prote N/A no 0.206 0.319 0.448 1e-32
Q9SFF4629 Filament-like plant prote no no 0.185 0.265 0.368 2e-22
>sp|Q9SLN1|FPP7_ARATH Filament-like plant protein 7 OS=Arabidopsis thaliana GN=FPP7 PE=3 SV=2 Back     alignment and function desciption
 Score =  585 bits (1509), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 354/753 (47%), Positives = 488/753 (64%), Gaps = 83/753 (11%)

Query: 2   MDHKPWLWRKKSSEKTIIATDKLDLSLKGNEAEMQILLTDKAELENDVKNLNDKLFSALA 61
           MDHK W W+KKS EKT++ ++       G       ++ DK ELE+ VK+LNDKL S  A
Sbjct: 1   MDHKAWPWKKKSMEKTVVESN-------GE------VVADKIELEHRVKSLNDKLNSVEA 47

Query: 62  ECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKE 121
           E N       KH   AQEAI G EK +AEV SLK++LD AL ++   EER  H DA LKE
Sbjct: 48  ESN-------KHETEAQEAIVGWEKTKAEVASLKKKLDEALNEKHRSEERSSHTDAGLKE 100

Query: 122 CMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALL 181
           C+ QL FVREEQE+R+HDA+ KAS E+E+ L++++ +LA + KRLA+   EN  L+KALL
Sbjct: 101 CVQQLRFVREEQERRMHDALTKASQEYERRLIVIKTELAGSGKRLAEAEGENAQLSKALL 160

Query: 182 AKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRR 241
           AK K +EDL ++R + E D N+L+  L+S EKEN SL+YEVRVL KELE+RNEEREF+RR
Sbjct: 161 AKNKTVEDLNRERDRIEVDFNSLVSSLESKEKENVSLRYEVRVLEKELELRNEEREFSRR 220

Query: 242 TADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRK 301
           TA+ SHK HLE+VKK+AKLESECQRLRVLVRKRLPGPAAL+KM NEVE+LG       R+
Sbjct: 221 TAEASHKLHLENVKKVAKLESECQRLRVLVRKRLPGPAALSKMSNEVEMLG-------RR 273

Query: 302 RLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTM 361
           R+N SP   M+D          S++IN LTEQL  +EEEN +L+E L+KK +ELQFSR M
Sbjct: 274 RVNGSPHSPMID----------SEKINNLTEQLCLLEEENKTLREALNKKVSELQFSRNM 323

Query: 362 YARAASKLSEVESQIEELSKGRKIMEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASA 421
           Y+R AS+L E ES +EE S+G  I EPSR+S +S+E+SL S+++  +DDKV+CA+S ASA
Sbjct: 324 YSRTASRLLEFESHLEESSRGTNI-EPSRSSNVSHEVSLASVTEFDNDDKVSCADSWASA 382

Query: 422 LISESEHLRSGKQREPPFCRTVGASDISLMDDFVEMERLAIVSV---NKPDGTSHVSPIR 478
           L+SE ++ ++ K+       T  A+++ LMDDF EME+LA+V+    N+P G+S +    
Sbjct: 383 LLSELDNFKNKKEMGTSLVGTPKAAEMKLMDDFAEMEKLAMVASTIDNRP-GSSPICSSD 441

Query: 479 ANAIVGPLETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSR-DILIGKFPSWLQEIL 537
           + +  GP+E ES+ +S            +       LN +   + DI     P  L  +L
Sbjct: 442 SISATGPVENESNENSSEAT--------KTSGTVYSLNPDASPKDDIKSDSLPQSLHIVL 493

Query: 538 ELILEQNHVTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNNLHKSNSPHFSSVTDA 597
           + ++E  H+T R+  ++LED+R AL  ++H S          S N  ++ +       D 
Sbjct: 494 KAVMEHKHITQRNTDEVLEDIRKALSSVNHSSF---------STNHQETKTLTVEDRLDM 544

Query: 598 EISLSEKNQQFHSDLSKSIRKIAELIEKINLTSPEYGLLENLSKKDGSVISYKNTAPSGY 657
           E            ++SKSI +I ++IE ++L            K +  V + ++   SGY
Sbjct: 545 EC-----------NISKSIHRIIDVIEGVSL------------KDERHVSNRESERLSGY 581

Query: 658 MVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDVSSM 717
             RV QWKT+ELS +LQ+F+ ACY +L+++AD  KFA +LS  LEW++NHCFSLQDVS+M
Sbjct: 582 TARVLQWKTTELSSVLQRFLQACYDLLDRKADMKKFAQELSSVLEWMVNHCFSLQDVSTM 641

Query: 718 KDEIKKHFDWDEVRSESEAEVGMVYQFTEADGL 750
           +DEIKK F+WDE RS SE ++G+  Q +EA+ L
Sbjct: 642 RDEIKKQFEWDESRSGSEVDIGIFRQVSEAEKL 674

Arabidopsis thaliana (taxid: 3702)
>sp|Q0WSY2|FPP4_ARATH Filament-like plant protein 4 OS=Arabidopsis thaliana GN=FPP4 PE=2 SV=1 Back     alignment and function description
>sp|Q9C698|FPP6_ARATH Filament-like plant protein 6 OS=Arabidopsis thaliana GN=FPP6 PE=2 SV=1 Back     alignment and function description
>sp|O65649|FPP5_ARATH Filament-like plant protein 5 OS=Arabidopsis thaliana GN=FPP5 PE=2 SV=2 Back     alignment and function description
>sp|Q9CAP9|FPP1_ARATH Filament-like plant protein 1 OS=Arabidopsis thaliana GN=FPP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9MA92|FPP3_ARATH Filament-like plant protein 3 OS=Arabidopsis thaliana GN=FPP3 PE=2 SV=2 Back     alignment and function description
>sp|Q8LLE5|FPP_SOLLC Filament-like plant protein (Fragment) OS=Solanum lycopersicum GN=FPP PE=1 SV=1 Back     alignment and function description
>sp|Q9SFF4|FPP2_ARATH Filament-like plant protein 2 OS=Arabidopsis thaliana GN=FPP2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query902
147791289 1124 hypothetical protein VITISV_042269 [Viti 0.996 0.799 0.624 0.0
359480795 1111 PREDICTED: filament-like plant protein 7 0.982 0.797 0.616 0.0
255565282 1132 Myosin-9, putative [Ricinus communis] gi 0.973 0.775 0.604 0.0
356563606 1096 PREDICTED: filament-like plant protein 7 0.984 0.810 0.551 0.0
356514210 1097 PREDICTED: filament-like plant protein 7 0.986 0.811 0.541 0.0
356540668 1075 PREDICTED: filament-like plant protein 7 0.973 0.816 0.527 0.0
356496915 1078 PREDICTED: filament-like plant protein 7 0.975 0.816 0.522 0.0
449508275 1088 PREDICTED: filament-like plant protein 7 0.966 0.801 0.520 0.0
449463945 1088 PREDICTED: filament-like plant protein 7 0.966 0.801 0.520 0.0
224084366947 predicted protein [Populus trichocarpa] 0.811 0.772 0.567 0.0
>gi|147791289|emb|CAN65607.1| hypothetical protein VITISV_042269 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1068 bits (2762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/926 (62%), Positives = 695/926 (75%), Gaps = 27/926 (2%)

Query: 2   MDHKPWLWRKKSSEKTIIATDKLDLSLKGNEAEMQILLTDKAELENDVKNLNDKLFSALA 61
           MD K WLWRKKS+EK I+A DK+++ LKGNE E+Q LL DKAELE D+K+LNDKL SA++
Sbjct: 1   MDQKTWLWRKKSTEKNIVAADKVNVPLKGNEEEIQTLLADKAELERDLKSLNDKLSSAVS 60

Query: 62  ECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKE 121
           E N KDDLVKKHAK AQEAITG E+A+AEVV+LKQELD AL+QR  GEERL HLDAALKE
Sbjct: 61  EHNVKDDLVKKHAKTAQEAITGWERAKAEVVTLKQELDEALRQRVAGEERLTHLDAALKE 120

Query: 122 CMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALL 181
           CM QL FVREEQEQRIHDAVMK + EFE++ M+LEEKLAETSKRLAKLG ENTHL+KALL
Sbjct: 121 CMQQLRFVREEQEQRIHDAVMKTAREFEKTQMVLEEKLAETSKRLAKLGAENTHLSKALL 180

Query: 182 AKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRR 241
           AKEKLI DL   R Q EAD NALM RLDSTEK++ASLKYEVRVL KELEIRNEEREFNRR
Sbjct: 181 AKEKLIGDLSDHRKQTEADFNALMTRLDSTEKDHASLKYEVRVLEKELEIRNEEREFNRR 240

Query: 242 TADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRK 301
           TAD SHKQHLESVKKIAKLESECQRLR+LVRKRLPGPAALAKMKNEVE+LGR+  E RR+
Sbjct: 241 TADASHKQHLESVKKIAKLESECQRLRLLVRKRLPGPAALAKMKNEVEMLGRDPSEMRRR 300

Query: 302 RLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTM 361
           + +SSP G MVDS   N  DTPSK  NFLTEQL +MEEEN +LKE L KKTNELQFSR M
Sbjct: 301 KSSSSPTGLMVDSVAYNSLDTPSKSTNFLTEQLCSMEEENKTLKEALVKKTNELQFSRIM 360

Query: 362 YARAASKLSEVESQIEELSKGRKIMEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASA 421
           YAR  SKLS+ E Q+EE   G  ++EP+RTS  S++LSL SMSD+GSDDKV+CAES AS+
Sbjct: 361 YARTTSKLSQDEVQLEESPXGHVLLEPTRTSXASHDLSLASMSDVGSDDKVSCAESWASS 420

Query: 422 LISESEHLRSGKQREPPFCRTVGASDISLMDDFVEMERLAIVSVNKPDGTSHVSPIRANA 481
           LISE EH ++GK    P  +TV  SDI+LMDDFVEME+LAIVSVNKP G  H S   A+ 
Sbjct: 421 LISELEHFKNGKXNXTPSRKTVRVSDINLMDDFVEMEKLAIVSVNKPLGNLHPSSQEADT 480

Query: 482 IVGPLETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWLQEILELIL 541
            +G ++ ES+  S  + G EI  V   Q+ F   N+EI+S +ILIGK P WLQ+IL++IL
Sbjct: 481 AIGTMDKESA--SSESKGREIVPVSGSQSAFSFSNQEIQSENILIGKVPGWLQDILKVIL 538

Query: 542 EQNHVTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNN-----------LHKSNSPH 590
           EQ HV+ R+P +I+ED+R A+ +I+H +T    D R+S+++              S +P+
Sbjct: 539 EQIHVSQRNPDEIIEDIRVAMAHINHLNTGDFFDARKSADHPDGSILPPPSGYISSKTPN 598

Query: 591 FSS-------VTDAEISLSE-KNQQFHSDLSKSIRKIAELIEKINLTSPEYGLLENLSKK 642
            SS       VT  + S SE  NQ+  SDLSKSI K+ ELIE I+L S +Y   E  S+K
Sbjct: 599 VSSVMXSSDRVTGVDNSSSETSNQKLQSDLSKSICKMVELIEGISLPSLDYDTQETFSRK 658

Query: 643 DGSVISYKNT-APSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIAL 701
           DGS   +KN+  P+GY+VRVFQWKTSEL  +L QFVH+C  +LN +AD  KFA +L+ AL
Sbjct: 659 DGSFFPHKNSETPTGYVVRVFQWKTSELRSVLNQFVHSCDDLLNGKADLEKFARELTSAL 718

Query: 702 EWIMNHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLP 761
           +WIMNHCFSLQDVSSMKD IKK FDWDE RSE+E E+G   QF+E + L LPR   SCLP
Sbjct: 719 DWIMNHCFSLQDVSSMKDAIKKQFDWDESRSENEVEIGTSSQFSEVNNLCLPREHLSCLP 778

Query: 762 TFAVANGHY-FSHKKELPSNESEPG----SEFINVEAGNKVRQECLVSAIDKSNSLMSQL 816
                N H  F   +E+ SN  E       E +++ +G K        AID+S SLM QL
Sbjct: 779 AGRAPNSHNDFFQTEEVLSNXREENQRLKDELMDMXSGKKNLGRRFRPAIDQSZSLMVQL 838

Query: 817 QESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLE 876
           QES+K +++ + EL++LK+S  +IEDQ +  K +NEDLDTQL V+R +LNEA QKLSSLE
Sbjct: 839 QESEKTIASLKKELEMLKESXRMIEDQSEHHKFMNEDLDTQLTVSRAELNEALQKLSSLE 898

Query: 877 VELEDKSNCCEELEATCLELQLQLER 902
           VELE ++NCCE+LEATCLELQLQL+R
Sbjct: 899 VELESRNNCCEDLEATCLELQLQLDR 924

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359480795|ref|XP_002278328.2| PREDICTED: filament-like plant protein 7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255565282|ref|XP_002523633.1| Myosin-9, putative [Ricinus communis] gi|223537195|gb|EEF38828.1| Myosin-9, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356563606|ref|XP_003550052.1| PREDICTED: filament-like plant protein 7-like [Glycine max] Back     alignment and taxonomy information
>gi|356514210|ref|XP_003525799.1| PREDICTED: filament-like plant protein 7-like [Glycine max] Back     alignment and taxonomy information
>gi|356540668|ref|XP_003538808.1| PREDICTED: filament-like plant protein 7-like [Glycine max] Back     alignment and taxonomy information
>gi|356496915|ref|XP_003517310.1| PREDICTED: filament-like plant protein 7-like [Glycine max] Back     alignment and taxonomy information
>gi|449508275|ref|XP_004163270.1| PREDICTED: filament-like plant protein 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449463945|ref|XP_004149690.1| PREDICTED: filament-like plant protein 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224084366|ref|XP_002307274.1| predicted protein [Populus trichocarpa] gi|222856723|gb|EEE94270.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query902
TAIR|locus:22049901054 AT1G47900 "AT1G47900" [Arabido 0.467 0.400 0.376 5.5e-80
TAIR|locus:2824556982 AT1G19835 "AT1G19835" [Arabido 0.501 0.460 0.383 3.2e-77
TAIR|locus:2135154996 AT4G36120 "AT4G36120" [Arabido 0.637 0.577 0.317 7.7e-67
TAIR|locus:2090684704 AT3G19370 [Arabidopsis thalian 0.332 0.426 0.312 6.1e-37
TAIR|locus:2204755779 AT1G77580 [Arabidopsis thalian 0.384 0.445 0.324 2.2e-32
MGI|MGI:102643 1972 Myh11 "myosin, heavy polypepti 0.412 0.188 0.218 1.9e-11
UNIPROTKB|P35749 1972 MYH11 "Myosin-11" [Homo sapien 0.463 0.211 0.210 2.4e-11
ZFIN|ZDB-GENE-030131-58701964 myh9a "myosin, heavy polypepti 0.439 0.201 0.208 7.1e-10
ZFIN|ZDB-GENE-100921-1 2020 myh14 "myosin, heavy chain 14, 0.508 0.227 0.220 1.4e-10
FB|FBgn0020503 1690 CLIP-190 "Cytoplasmic linker p 0.444 0.237 0.206 1.6e-10
TAIR|locus:2204990 AT1G47900 "AT1G47900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 701 (251.8 bits), Expect = 5.5e-80, Sum P(3) = 5.5e-80
 Identities = 166/441 (37%), Positives = 270/441 (61%)

Query:    44 ELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQ 103
             +L  DV++LN+KL  A  E   K+ LVK+H+K+A++A++G EKA+AE ++LK  L++   
Sbjct:   110 KLNEDVEDLNEKLSVANEEIVTKEALVKQHSKVAEDAVSGWEKADAEALALKNTLESVTL 169

Query:   104 QRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETS 163
              + T E+R  HLD ALKECM Q+  ++++ E ++HD  +  + + E+  M  E+++ +  
Sbjct:   170 SKLTAEDRAAHLDGALKECMRQIRNLKKDHEVKLHDVALSKTKQIEKMTMEFEKRMCDYE 229

Query:   164 KRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVR 223
             + L +   ++  L++ L  +  ++  + +++++A+A+   L   L+  E+E  SLKYEV 
Sbjct:   230 QELLRSAADSDALSRTLQERSNMLVKVSEEKSRADAEIETLKSNLEMCEREIKSLKYEVH 289

Query:   224 VLGKXXXXXXXXXXXXXXTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAK 283
             V+ K              +A+ ++KQHLE VKKIAKLE+ECQRLR LVRK+LPGPAALA+
Sbjct:   290 VVSKELEIRNEEKNMCIRSAESANKQHLEGVKKIAKLEAECQRLRSLVRKKLPGPAALAQ 349

Query:   284 MKNEVEILGRESPETRRKR----LNS---SPLG-SMVDSAF--DNPPDTPSKRINFLTEQ 333
             MK EVE LGR+S + R+KR    ++S   SP G S   S F  DN      K   FLTE+
Sbjct:   350 MKLEVENLGRDSGDARQKRSPVKVSSPCKSPGGYSSTGSEFSLDNAQKF-QKENEFLTER 408

Query:   334 LRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSKGRKIMEPSRTSI 393
             L AMEEE   LKE L K+ +EL  SR + A++ SKL  +E+Q+++ +  +  +E      
Sbjct:   409 LLAMEEETKMLKEALAKRNSELLESRNLCAQSTSKLQSLEAQLQQNNSQKSSLEVCPNLN 468

Query:   394 MSYELSLTSMSDIGSDDKVNCAESRASALISESEHLRSGKQREPPFCRTVGA--SDISLM 451
              S   S  S+S+ G+DD  +C+ S ++   + S+ ++  K+++      V +  S + LM
Sbjct:   469 TSNPSSSISVSEDGNDDSGSCSGSLST---NPSQQIK--KEKDMAALERVESVNSHVELM 523

Query:   452 DDFVEMERLAIV-SVNKPDGT 471
             DDF+EME+LA + +++  +G+
Sbjct:   524 DDFLEMEKLACLPNLSSSNGS 544
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2824556 AT1G19835 "AT1G19835" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135154 AT4G36120 "AT4G36120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090684 AT3G19370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204755 AT1G77580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:102643 Myh11 "myosin, heavy polypeptide 11, smooth muscle" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P35749 MYH11 "Myosin-11" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5870 myh9a "myosin, heavy polypeptide 9a, non-muscle" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-100921-1 myh14 "myosin, heavy chain 14, non-muscle" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0020503 CLIP-190 "Cytoplasmic linker protein 190" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0027007401
hypothetical protein (947 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query902
pfam05911767 pfam05911, DUF869, Plant protein of unknown functi 1e-148
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-10
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-09
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-09
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-07
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-06
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-06
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-05
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-05
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 8e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.001
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869) Back     alignment and domain information 
 Score =  455 bits (1172), Expect = e-148
 Identities = 293/837 (35%), Positives = 422/837 (50%), Gaps = 127/837 (15%)

Query: 66  KDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQ 125
           K+ LVK+HAK+A+EA++G EKAEAE  +LKQ+L+    ++   E+R  HLD ALKECM Q
Sbjct: 1   KEALVKQHAKVAEEAVSGWEKAEAEAAALKQQLEDVTLKKLAAEDRASHLDGALKECMRQ 60

Query: 126 LHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEK 185
           L  VREEQEQ+I DA  + + E+E+    LE+KL E  K LA+   EN  L+++L  K K
Sbjct: 61  LRQVREEQEQKIQDAATEKTKEWEKVKAELEKKLLELQKELARAAAENDALSRSLQEKSK 120

Query: 186 LIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADE 245
           +I +L +++++AE++   L  RL+S EKEN+SLKYEV VL KELEIRNEER  + ++AD 
Sbjct: 121 MIMELSEEKSRAESEIEDLKARLESAEKENSSLKYEVHVLSKELEIRNEERNMSLQSADA 180

Query: 246 SHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNS 305
           + KQHLE VKKIAKLE+ECQRLR LVRKRLPGPAALAKMK EVE LG    + R +R + 
Sbjct: 181 ASKQHLEGVKKIAKLEAECQRLRGLVRKRLPGPAALAKMKLEVESLGSNFVDNRSRR-SP 239

Query: 306 SPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARA 365
           SP  S   S+  N      K   FLT +L AME+EN +LKE L K+ +ELQFSR MYA+ 
Sbjct: 240 SPASSAFHSSPQNLQKA-QKENEFLTARLLAMEDENKTLKEALSKRNSELQFSRNMYAKT 298

Query: 366 ASKLSEVESQIEELSKGRKIMEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASALISE 425
           ASKLS +E+Q+E  S      E S +S  S   SLTS+S+ G+DD+ +C+ES ASALISE
Sbjct: 299 ASKLSVLEAQLE--SNRDVSTELSSSSNTSNPPSLTSVSEDGNDDEGSCSESWASALISE 356

Query: 426 SEHLRSGKQREPPFCRTVGASDISLMDDFVEMERLAIVSVNKPDGTSHVSPIRANAIVGP 485
            E  +  K        T  +S++ LMDDF+EME+LA++        S VS          
Sbjct: 357 LEQFKKEKGMGKSSKGTASSSEMELMDDFLEMEKLAMLPPESSADGSKVS---------- 406

Query: 486 LETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWLQEILELILEQNH 545
             +     S   +   +      +               L  + P  LQ +L+L++E++ 
Sbjct: 407 --SPKCSDSSVALTGPVEHEDNLE-------------SKLSDRLPEVLQSVLKLVMEKHI 451

Query: 546 VTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNNLHKSNSPHFSSVTDAEISLSEKN 605
           ++     +ILED+   L                                       S + 
Sbjct: 452 ISEIS--EILEDIEAEL--------------------------------------DSLER 471

Query: 606 QQFHSDLSKSIRKIAELIEKINLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWK 665
                D ++ +  +  L+E+ +        LE                           +
Sbjct: 472 SSNGDDENEEVAMVGSLVEESSAVIERSQELEGAVS-----------------------R 508

Query: 666 TSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDVSSMKDEIKKHF 725
            SE + +L+  V  C  +L+ +AD  KF  + S+ LEW++N   SLQDVS    EIKK+F
Sbjct: 509 ISEFTSVLEHEVTVCQDLLDGKADLEKFIQEFSLTLEWVVNQEKSLQDVSVEASEIKKNF 568

Query: 726 DWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYFSHKKELPSNESEPG 785
                   SE E+    +   A  +                                   
Sbjct: 569 LGL---KSSEKEINSPDEVKGAVCISTL-------------------------------- 593

Query: 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVK 845
            E   +++  +     L    D      ++LQE++K +   ++ELD  ++S  + E Q+K
Sbjct: 594 EELETLKSEKENLDGELSKCKDDLEESKNKLQETEKKLEELKSELDASQESNSLAETQLK 653

Query: 846 LQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLER 902
                 E L+ + K    +     +K+SSLE ELE +    +EL A C EL+ ++ER
Sbjct: 654 CMVESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIER 710

This family consists of a number of sequences found in Arabidopsis thaliana, Oryza sativa and Lycopersicon esculentum (Tomato). The function of this family is unknown. Length = 767
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 902
PF05911769 DUF869: Plant protein of unknown function (DUF869) 100.0
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 98.75
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 98.52
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 97.92
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.91
PF05911769 DUF869: Plant protein of unknown function (DUF869) 97.83
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 97.63
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 97.37
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.35
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 97.35
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 97.34
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 97.26
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 97.18
PRK02224880 chromosome segregation protein; Provisional 97.11
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.02
TIGR006061311 rad50 rad50. This family is based on the phylogeno 97.0
KOG06121317 consensus Rho-associated, coiled-coil containing p 96.93
TIGR006061311 rad50 rad50. This family is based on the phylogeno 96.91
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 96.9
PRK04778569 septation ring formation regulator EzrA; Provision 96.81
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.77
PF10174775 Cast: RIM-binding protein of the cytomatrix active 96.74
KOG0977546 consensus Nuclear envelope protein lamin, intermed 96.72
PF00038312 Filament: Intermediate filament protein; InterPro: 96.63
PRK02224880 chromosome segregation protein; Provisional 96.5
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.36
KOG4673961 consensus Transcription factor TMF, TATA element m 96.23
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 96.21
PRK11637428 AmiB activator; Provisional 96.11
PRK11637428 AmiB activator; Provisional 96.06
KOG0977546 consensus Nuclear envelope protein lamin, intermed 95.93
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 95.87
PF15254861 CCDC14: Coiled-coil domain-containing protein 14 95.86
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 95.79
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 95.64
PF00038312 Filament: Intermediate filament protein; InterPro: 95.36
PHA02562562 46 endonuclease subunit; Provisional 95.33
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 95.27
PF10174775 Cast: RIM-binding protein of the cytomatrix active 95.13
PRK03918880 chromosome segregation protein; Provisional 95.06
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 95.06
PF05701522 WEMBL: Weak chloroplast movement under blue light; 94.91
KOG0980980 consensus Actin-binding protein SLA2/Huntingtin-in 94.8
KOG0996 1293 consensus Structural maintenance of chromosome pro 94.72
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 94.58
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 94.43
PRK04863 1486 mukB cell division protein MukB; Provisional 94.39
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 94.23
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 94.2
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 94.1
KOG2991330 consensus Splicing regulator [RNA processing and m 94.02
PHA02562562 46 endonuclease subunit; Provisional 94.0
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 93.95
KOG4593716 consensus Mitotic checkpoint protein MAD1 [Cell cy 93.77
KOG4593716 consensus Mitotic checkpoint protein MAD1 [Cell cy 93.66
PRK04863 1486 mukB cell division protein MukB; Provisional 93.53
PRK11281 1113 hypothetical protein; Provisional 93.45
KOG09331174 consensus Structural maintenance of chromosome pro 93.36
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 93.31
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 93.29
PF135141111 AAA_27: AAA domain 93.19
KOG06121317 consensus Rho-associated, coiled-coil containing p 93.16
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 93.12
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 92.76
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 92.6
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 92.55
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 92.03
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 91.94
PF12795240 MscS_porin: Mechanosensitive ion channel porin dom 91.78
KOG0933 1174 consensus Structural maintenance of chromosome pro 91.62
PF05010207 TACC: Transforming acidic coiled-coil-containing p 91.51
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 91.49
KOG1003205 consensus Actin filament-coating protein tropomyos 91.34
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 91.16
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 91.1
PF03148384 Tektin: Tektin family; InterPro: IPR000435 Tektin 90.74
TIGR00634563 recN DNA repair protein RecN. All proteins in this 90.63
PF05010207 TACC: Transforming acidic coiled-coil-containing p 90.58
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 90.58
PF1232974 TMF_DNA_bd: TATA element modulatory factor 1 DNA b 90.46
PRK09039 343 hypothetical protein; Validated 90.19
KOG4807593 consensus F-actin binding protein, regulates actin 89.97
PRK03918880 chromosome segregation protein; Provisional 89.83
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 89.58
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 89.45
KOG0288459 consensus WD40 repeat protein TipD [General functi 89.21
COG4942420 Membrane-bound metallopeptidase [Cell division and 89.09
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 88.96
PRK10884206 SH3 domain-containing protein; Provisional 88.89
PRK09039343 hypothetical protein; Validated 88.79
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 88.79
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 88.71
TIGR01005754 eps_transp_fam exopolysaccharide transport protein 88.69
KOG0963629 consensus Transcription factor/CCAAT displacement 88.62
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 88.59
PRK10929 1109 putative mechanosensitive channel protein; Provisi 88.33
PF10186302 Atg14: UV radiation resistance protein and autopha 88.22
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 88.07
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 88.04
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 87.75
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 87.61
KOG09711243 consensus Microtubule-associated protein dynactin 87.11
PF15397258 DUF4618: Domain of unknown function (DUF4618) 86.95
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 86.83
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 86.78
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 86.38
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 86.24
KOG1937521 consensus Uncharacterized conserved protein [Funct 85.83
KOG4673961 consensus Transcription factor TMF, TATA element m 85.4
PF13851201 GAS: Growth-arrest specific micro-tubule binding 85.27
KOG0963629 consensus Transcription factor/CCAAT displacement 85.18
TIGR01005754 eps_transp_fam exopolysaccharide transport protein 85.01
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 84.99
TIGR026801353 conserved hypothetical protein TIGR02680. Members 84.88
PF13851201 GAS: Growth-arrest specific micro-tubule binding 84.36
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 84.31
PF0798975 Microtub_assoc: Microtubule associated; InterPro: 84.2
PF05701522 WEMBL: Weak chloroplast movement under blue light; 84.16
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 84.16
PRK102461047 exonuclease subunit SbcC; Provisional 84.06
PF06818202 Fez1: Fez1; InterPro: IPR009638 This family repres 83.79
KOG10291118 consensus Endocytic adaptor protein intersectin [S 83.65
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 83.38
KOG4809654 consensus Rab6 GTPase-interacting protein involved 83.18
PF10186302 Atg14: UV radiation resistance protein and autopha 82.93
PRK10361475 DNA recombination protein RmuC; Provisional 82.44
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 82.34
PRK10884206 SH3 domain-containing protein; Provisional 82.25
PF00769 246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 82.2
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 81.94
KOG0971 1243 consensus Microtubule-associated protein dynactin 81.67
PRK1542279 septal ring assembly protein ZapB; Provisional 81.56
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 81.38
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 81.24
PF1232974 TMF_DNA_bd: TATA element modulatory factor 1 DNA b 81.21
PF14988206 DUF4515: Domain of unknown function (DUF4515) 81.03
KOG0999772 consensus Microtubule-associated protein Bicaudal- 80.99
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 80.81
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 80.29
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information 
Probab=100.00  E-value=2.4e-182  Score=1570.17  Aligned_cols=712  Identities=49%  Similarity=0.644  Sum_probs=636.6

Q ss_pred             chhHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q 002598           66 KDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKAS  145 (902)
Q Consensus        66 Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s  145 (902)
                      ||+|||||+|||||||+||||||+||++||+|||++++|+++++|||+|||||||+||||||++||||||+||||+++++
T Consensus         1 k~~lvkqh~kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s   80 (769)
T PF05911_consen    1 KDDLVKQHAKVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKS   80 (769)
T ss_pred             CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHH
Q 002598          146 MEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVL  225 (902)
Q Consensus       146 ~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~l  225 (902)
                      +||+++|.+||.||++++++|+++++||++|+++|++|+++|.+|+++++++++++.+|++||+++||||++||||||++
T Consensus        81 ~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~  160 (769)
T PF05911_consen   81 KEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL  160 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCC
Q 002598          226 GKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNS  305 (902)
Q Consensus       226 qKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvRK~lPgpAala~Mk~Eve~lg~d~~e~rrrr~~~  305 (902)
                      +|||+||++||+|++||||+|||||||+|||||||||||||||+||||||||||||||||+||+++|++++++||||+++
T Consensus       161 ~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~  240 (769)
T PF05911_consen  161 SKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPS  240 (769)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHhHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHhhcccc
Q 002598          306 SPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSKGRKI  385 (902)
Q Consensus       306 ~~~~~~~~s~~d~~~~~~~k~~~~l~erL~~~EeEnk~LKe~Lakkn~ELq~sr~m~a~taskLs~~e~ql~~ls~~~~~  385 (902)
                      ++++++ .++. ..+..+.+.++|||+||++|||||||||++|++||+||||||+|||+|||||++||+|+ +.+ ++++
T Consensus       241 ~~~~~~-~~~~-~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql-~~~-~~~~  316 (769)
T PF05911_consen  241 RPSSPH-DFSP-QNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL-KSS-GQVS  316 (769)
T ss_pred             cccccc-cccc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-hccc
Confidence            776443 3333 44455788999999999999999999999999999999999999999999999999999 445 9999


Q ss_pred             cCCccccccccccccccccCCCCCCCCCcchhhhhhhhchhhhhccCCCCCCCCccccCccCCcccchHHHhHHhhhccC
Q 002598          386 MEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASALISESEHLRSGKQREPPFCRTVGASDISLMDDFVEMERLAIVSV  465 (902)
Q Consensus       386 ~e~~~~~~~s~~~s~~S~sd~g~dd~~scseSWAsALisEld~fk~~K~~~~~s~~~~~~sdi~LMDDFlEMEKLA~~s~  465 (902)
                      +|+++|+|++||+|++||||+|+||++||+|||||||||||||||++|.++++++++++++||+|||||||||||||+|+
T Consensus       317 ~e~~~s~~~~~~~s~~s~se~~~dd~~s~s~SWAsaLiseldqfk~~k~~~~~~~~~~~~~~i~LMDDFlEmEkLA~~s~  396 (769)
T PF05911_consen  317 MELSSSQNTSNPPSLTSMSEDGNDDEGSCSDSWASALISELDQFKNEKVISRSSSKTISSSDIDLMDDFLEMEKLAALSR  396 (769)
T ss_pred             cccccccCCCCCCchhcccccCCCCCCcccchhHHHHhchHHHhccccccccccccCCccccHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999998888889998889999999999999999999


Q ss_pred             CCCCCCCccCcccccccCCCCCCCCCCCCCCccCccccccCCcccccccccchhhhhhhccCCCchhHHHHHHHHHhhhc
Q 002598          466 NKPDGTSHVSPIRANAIVGPLETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWLQEILELILEQNH  545 (902)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~~~~~~s~~~~~~~~gkelv~~~~~~~~~~~s~~~~~~~d~~~~~~~~wlqdvl~~Ileq~~  545 (902)
                      +++.+.+..++...        ++.......+.+.+.++..                +++++++|+|||+|+++|+++|+
T Consensus       397 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~wLqsv~k~v~~q~~  452 (769)
T PF05911_consen  397 DSSSPSSCSSSEVD--------SDSSVTLESSSKRESVLES----------------DKLSDRIPEWLQSVLKLVLEQKE  452 (769)
T ss_pred             CCCCCCCCCCcccc--------ccccccccccccccccccc----------------hhhcccccHHHHHHHHHHHHHHH
Confidence            87644433322111        1222333334443433311                57889999999999999999999


Q ss_pred             cCCCChhhHHHHHHHHhhhccccccccccccccccCCCCCCCCCCCCCCchhhhhhhhhhhhhhhhhhHHHHHHHHHHHh
Q 002598          546 VTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNNLHKSNSPHFSSVTDAEISLSEKNQQFHSDLSKSIRKIAELIEK  625 (902)
Q Consensus       546 ~s~~~~d~ILedIr~AL~~in~~~~~~~~d~~~~~~~~~t~~~~e~~~v~~~~~~~~~~~q~~q~dL~ksI~~I~~lIe~  625 (902)
                      +++++  .||+||+.||++++++..++..+.     . +                               +...+.+++.
T Consensus       453 ~s~i~--~ILedI~~al~~~~~~~~~~~~~~-----~-~-------------------------------~~~~~sL~e~  493 (769)
T PF05911_consen  453 VSKIS--EILEDIEIALDSINNSSNCDDDSE-----E-Y-------------------------------ESMEASLVEE  493 (769)
T ss_pred             hhhHH--HHHHHHHHHHHhhccccccccccc-----h-h-------------------------------hhhhhhHHHH
Confidence            99999  999999999999988765444111     0 0                               2345566666


Q ss_pred             hccCCcccccccccccCCCcccccCCCCCCcceeeeecccchhhHHHHHHHHHHhhhhccCcccHHHHHHHHHHHHHHHH
Q 002598          626 INLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIM  705 (902)
Q Consensus       626 i~~~~~~~~~~~~~~~~dg~~~~~~n~~~~gy~v~~f~wk~seL~~~Le~fvh~C~dlL~gka~le~F~~El~~~L~wi~  705 (902)
                      +..+.....                  .+.+|+     |+.++|+.+|++|+|+|+|||+|+++|++|+.|+|.+|+||+
T Consensus       494 ~~s~~~~s~------------------eL~~av-----skIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIl  550 (769)
T PF05911_consen  494 SKSMIEISQ------------------ELNVAV-----SKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWIL  550 (769)
T ss_pred             HHHHHhhcc------------------cHHHHH-----HhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence            665544222                  223444     444899999999999999999999999999999999999999


Q ss_pred             hhcccccccchhHHHhhhccCchhhccccchhhccccccccccCCCCCCCCCCCCCcccccCCcccCCCCCCCCCCCCCC
Q 002598          706 NHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYFSHKKELPSNESEPG  785 (902)
Q Consensus       706 n~cfs~~d~s~~~d~ikk~fd~~eS~s~~e~e~~~~~~~~~~dk~~l~~~~~~~~~~~~~sn~~~~~~~~e~~~~~~~e~  785 (902)
                      +|||+++|+++|+|+|+++|+|+.+.+   .+   ++..++++.                   .          ....-.
T Consensus       551 s~~~SLqDv~s~~sEIK~~f~~~ss~e---~E---~~~~dea~~-------------------~----------~~~el~  595 (769)
T PF05911_consen  551 SNCFSLQDVSSMRSEIKKNFDGDSSSE---AE---INSEDEADT-------------------S----------EKKELE  595 (769)
T ss_pred             HccchHHHHHHHHHHHHHhhhhccccc---cc---ccchHHHHH-------------------H----------HHHHHH
Confidence            999999999999999999999998853   22   112111100                   0          001126


Q ss_pred             cccccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHH
Q 002598          786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDL  865 (902)
Q Consensus       786 ~e~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~el  865 (902)
                      ++|+.++++|++|++.|.+|+++++.+++||+|+|++|++|+++|.++++|++++|+||+||+++|++|++|++++++++
T Consensus       596 eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~  675 (769)
T PF05911_consen  596 EELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEA  675 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHhhhhhhcchHHHHHHHHHHHhhcC
Q 002598          866 NEACQKLSSLEVELEDKSNCCEELEATCLELQLQLER  902 (902)
Q Consensus       866 n~~~~K~ssLE~ELe~~k~~ceelea~C~ELq~QLe~  902 (902)
                      +.++.|+++||+||++++.+|+|++++|.+||+||+|
T Consensus       676 ~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r  712 (769)
T PF05911_consen  676 EELQSKISSLEEELEKERALSEELEAKCRELEEELER  712 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHh
Confidence            9999999999999999999999999999999999986

The function of this family is unknown.
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG2991 consensus Splicing regulator [RNA processing and modification] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules [] Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF15397 DUF4618: Domain of unknown function (DUF4618) Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>KOG1937 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PRK10246 exonuclease subunit SbcC; Provisional Back     alignment and domain information
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PRK10361 DNA recombination protein RmuC; Provisional Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures Back     alignment and domain information
>PF14988 DUF4515: Domain of unknown function (DUF4515) Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query902
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-14
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 7e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-07
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 76.8 bits (189), Expect = 2e-14
 Identities = 44/272 (16%), Positives = 105/272 (38%), Gaps = 26/272 (9%)

Query: 32   EAEMQILLTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEV 91
            E     L   K ELE  +  +  ++              ++  + +Q+    ++K + ++
Sbjct: 912  EEMRVRLAAKKQELEEILHEMEARI--------------EEEEERSQQLQAEKKKMQQQM 957

Query: 92   VSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIH--DAVMKASMEFE 149
            + L+++L+     R   +   +  D  +K+  D +  + ++  +       + +   +  
Sbjct: 958  LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

Query: 150  QSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLD 209
             +L   EEK    +K   K     + L   L  +EK  ++L K + + E +S+ L  ++ 
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA 1077

Query: 210  STEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRV 269
              + + A LK ++    +EL+      E      + + K+  E    I+ L+ + +  + 
Sbjct: 1078 ELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK- 1136

Query: 270  LVRKRLPGPAALAKMKNEVEILGRESPETRRK 301
                     AA  K + +   L  E    + +
Sbjct: 1137 ---------AARNKAEKQKRDLSEELEALKTE 1159
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00