Citrus Sinensis ID: 002608

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900

MQLLSLNKSFKSHGSYKHIHEKSGRTSSSNASSRGESSILLDEERQKNITAVGAQDTIKMDGGYGGTDNDRHHRLLYNNTPAIRESSYQFCSDDDEDDGEKISERNMRSGDYKRRSIKFTQREDENNKDYNDPPSKLIGQFLNKQKDIGEIVLDMDLEMDELQQFTQNNNCNNNNANTPSSPHSTDVSREIRNQDEILRCTSNNLSFQRRPHTLTATLTRSKTRSRLQDPPPEEIIERIPKSGQLRSGLLGKMGGDDDDETVFGEDLPEEFTRSKFSALIFIEWASLILIVAALLCSLLIHEIKKKSLWDLKLWKWEVMVLVLICGRLVSGWGIRLIVFFIERNFVLRKRLLYFVYGVKKPVQNCLWLGLVLITWYNLFDSKVERETKSAILSYITKILVCLLIGTIVWLVKTLMIKVLASSFHVSTYFDRIQESLFYQYVIETLSGPALLEIQMHDDEEERKTATEVNKLQNAGAVSPPDLRYAFAKSGKVIGKSSRDNKGSGKLSRASSKKGTNDHDGITIDHLHKLNPKNVSAWNMKRLVNMVRHGALITLDEQLPGQPPEADDSANQIRSEYEAKAAARKIFLNVARYGSKHIYLEDLMRFMQEEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFRERRALALTLNDTKTAVKKLHKLVNVVFAIIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEVDGVQMIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPDMGDAIEFCVHITTPSEKIALMRQRIVGYIEGKKEHWCTAPMIILKDVEDFTRLRVAVWPCHKMNHQDMGERWTRRALLVEEMVKIFRELDIQYRLFPLDINVRSVPAPIVSERMPSSWTNNTSTS

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccEEEEEHHHHHHHHHHHHHHHHHHEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccHHHHHHHHHHHcccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccccccEEEEccEEEEEEEEEEEEEEEEEccccEEEEEccccccccEEEEEcccccEEEEEEEEEccccHHHHHHHHHHHHHHHHccccccccccEEEEEccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccccccccccc

cccccHHHHccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccEEcccEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEccccccHHHHHccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcccccHHHccccccHccccccHHHcccHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccHHHHHHHHHHHHHHHccccccEEEHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccccEEEEcccEEEEEEEEEEEEEEEcccccEEEEccHHHccccHHcccccccHcccEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEccccccccccccccccccccccc

MQLLSLNksfkshgsykhiheksgrtsssnassrgessillDEERQKNItavgaqdtikmdggyggtdndrhhrllynntpairessyqfcsdddeddgekisernmrsgdykrrsikftqredennkdyndppskliGQFLNKQKDIGEIVLDMDLEMDELQQFTqnnncnnnnantpssphstdvsreirnqdeilrctsnnlsfqrrphtltatltrsktrsrlqdpppeeiieripksgqlrsgllgkmggddddetvfgedlpeeftrsKFSALIFIEWASLILIVAALLCSLLIHEIKKKSLWDLKLWKWEVMVLVLICGRLVSGWGIRLIVFFIERNFVLRKRLLYFVYGVKKPVQNCLWLGLVLITWYNLFDSKVERETKSAILSYITKILVCLLIGTIVWLVKTLMIKVLASSFHVSTYFDRIQESLFYQYVIETLSGPALLEIQMHDDEEERKTATEVNKlqnagavsppdLRYAFAKSgkvigkssrdnkgsgklsrasskkgtndhdgitidhlhklnpknvsAWNMKRLVNMVRHGAlitldeqlpgqppeaddsaNQIRSEYEAKAAARKIFLNVARYGSKHIYLEDLMRFMQEEEAVKTMSLFegskengrisKSSLKNWVVNAFRERRALALTLNDTKTAVKKLHKLVNVVFAIIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVihpfdvgdrcevDGVQMIVEEMNVLTTVFLRydnlkiiypngvlstkpihnfyqspdmgdaIEFCVHITTPSEKIALMRQRIVGYIegkkehwctaPMIILKDVEDFTRLRVAvwpchkmnhqdmGERWTRRALLVEEMVKIFRELDIqyrlfpldinvrsvpapivsermpsswtnntsts

mqllslnksfkshgsykhiheksgrtsssnassrgessilldeerqknitavgaqdtikmdGGYGGTDNDRHHRLLYNNTPAIRESSYQFCSdddeddgekisernmrsgdykrrsikftqredennkdyndppskliGQFLNKQKDIGEIVLDMDLEMDELQQFTQNNncnnnnantpssphsTDVSREIRNQDEILRctsnnlsfqrrphtltatltrsktrsrlqdpppeeiieripksgqlrSGLLGKMGGDDDDETVFGEDLPEEFTRSKFSALIFIEWASLILIVAALLCSLLIHEIKKKSLWDLKLWKWEVMVLVLICGRLVSGWGIRLIVFFIERNFVLRKRLLYFVYGVKKPVQNCLWLGLVLITWYNLFDSKVERETKSAILSYITKILVCLLIGTIVWLVKTLMIKVLASSFHVSTYFDRIQESLFYQYVIETLSGPALLEIQMHDDEEERKTATEVNklqnagavsppdlRYAFAKSgkvigkssrdnkgsgklsrasskkgtndhdgitidhlhklnpkNVSAWNMKRLVNMVRHGALITLDEQLPGQPPEADDSANQIRSEYEAKAAARKIFLNVARYGSKHIYLEDLMRFMQEEEAVKTMSLfegskengrisksslknwVVNAFRERRALALTLNDTKTAVKKLHKLVNVVFAIIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEVDGVQMIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPDMGDAIEFCVHITTPSEKIALMRQRIVGYIEGKKEHWCTAPMIILKDVEDFTRLRVAVWpchkmnhqdmgerWTRRALLVEEMVKIFRELDIQYRLFPLDINVRSVpapivsermpsswtnntsts

MQLLSLNKSFKSHGSYKHIHEKsgrtsssnassrgessILLDEERQKNITAVGAQDTIKMDGGYGGTDNDRHHRLLYNNTPAIRESSYQFCSDDDEDDGEKISERNMRSGDYKRRSIKFTQREDENNKDYNDPPSKLIGQFLNKQKDIGEIVLDMDLEMDELQQFTQnnncnnnnanTPSSPHSTDVSREIRNQDEILRCTSNNLSFQRRPHTLTATLTRSKTRSRLQDpppeeiieripKSGQLRSgllgkmggddddETVFGEDLPEEFTRSKFSALIFIEWASLILIVAALLCSLLIHEIkkkslwdlklwkwEVMVLVLICGRLVSGWGIRLIVFFIERNFVLRKRLLYFVYGVKKPVQNCLWLGLVLITWYNLFDSKVERETKSAILSYITKILVCLLIGTIVWLVKTLMIKVLASSFHVSTYFDRIQESLFYQYVIETLSGPALLEIQMHDDEEERKTATEVNKLQNAGAVSPPDLRYAFAKSGKVIGKSSRDNKGSGKLSRASSKKGTNDHDGITIDHLHKLNPKNVSAWNMKRLVNMVRHGALITLDEQLPGQPPEADDSANQIRSEYEAKAAARKIFLNVARYGSKHIYLEDLMRFMQEEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFRERRALALTLNDTKTAVKKLHKLVNVVFAiiilviwllilkiATTEfllflssqlvlvafvfGNTCKTIFEALIFLFVIHPFDVGDRCEVDGVQMIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPDMGDAIEFCVHITTPSEKIALMRQRIVGYIEGKKEHWCTAPMIILKDVEDFTRLRVAVWPCHKMNHQDMGERWTRRALLVEEMVKIFRELDIQYRLFPLDINVRSVPAPIVSERMPSSWTNNTSTS

************************************************************************HRLLYNN**********************************************************IGQFLNKQKDIGEIVLDMDL****************************************************************************************************************EFTRSKFSALIFIEWASLILIVAALLCSLLIHEIKKKSLWDLKLWKWEVMVLVLICGRLVSGWGIRLIVFFIERNFVLRKRLLYFVYGVKKPVQNCLWLGLVLITWYNLFDSKVERETKSAILSYITKILVCLLIGTIVWLVKTLMIKVLASSFHVSTYFDRIQESLFYQYVIETLSGPALLEI*******************************************************************ITIDHLHKLNPKNVSAWNMKRLVNMVRHGALITL*************************AAARKIFLNVARYGSKHIYLEDLMRFMQE***********************LKNWVVNAFRERRALALTLNDTKTAVKKLHKLVNVVFAIIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEVDGVQMIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPDMGDAIEFCVHITTPSEKIALMRQRIVGYIEGKKEHWCTAPMIILKDVEDFTRLRVAVWPCHKMNHQDMGERWTRRALLVEEMVKIFRELDIQYRLFPLDINVRSVPAP*****************

*******************************************************************************************************************************************************************************************************************************************************************ETVFGEDLPEEFTRSKFSALIFIEWASLILIVAALLCSLLIHEIKKKSLWDLKLWKWEVMVLVLICGRLVSGWGIRLIVFFIERNFVLRKRLLYFVYGVKKPVQNCLWLGLVLITWYNLFDSKVERETKSAILSYITKILVCLLIGTIVWLVKTLMIKVLASSFHVSTYFDRIQESLFYQYVIETLSGPA************************************************************************************************V*HGALITLDEQLP************IRSEYEAKAAARKIFLNVARYGSKHIYLEDLMRFMQEEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFRERRALALTLNDTKTAVKKLHKLVNVVFAIIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEVDGVQMIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPDMGDAIEFCVHITTPSEKIALMRQRIVGYIEGKKEHWCTAPMIILKDVEDFTRLRVAVWPCHKMNHQDMGERWTRRALLVEEMVKIFRELDIQYRLFPLDINV***********************

MQLLSLNKSFK***************************ILLDEERQKNITAVGAQDTIKMDGGYGGTDNDRHHRLLYNNTPAIRESSYQFCSDDDEDDGEKISERNMRSGDYKRRSIKFTQREDENNKDYNDPPSKLIGQFLNKQKDIGEIVLDMDLEMDELQQFTQNNNCNNNNA*************EIRNQDEILRCTSNNLSFQRRPHTLTATLTR**********PPEEIIERIPKSGQLRSGLLGKMGGDDDDETVFGEDLPEEFTRSKFSALIFIEWASLILIVAALLCSLLIHEIKKKSLWDLKLWKWEVMVLVLICGRLVSGWGIRLIVFFIERNFVLRKRLLYFVYGVKKPVQNCLWLGLVLITWYNLFDSKVERETKSAILSYITKILVCLLIGTIVWLVKTLMIKVLASSFHVSTYFDRIQESLFYQYVIETLSGPALLEIQMHDDEEERKTATEVNKLQNAGAVSPPDLRYAFAKSGKVIGK*********************DHDGITIDHLHKLNPKNVSAWNMKRLVNMVRHGALITLDEQLP***********QIRSEYEAKAAARKIFLNVARYGSKHIYLEDLMRFMQEEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFRERRALALTLNDTKTAVKKLHKLVNVVFAIIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEVDGVQMIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPDMGDAIEFCVHITTPSEKIALMRQRIVGYIEGKKEHWCTAPMIILKDVEDFTRLRVAVWPCHKMNHQDMGERWTRRALLVEEMVKIFRELDIQYRLFPLDINVRSVPAPIVSERM***********

************************************************ITAVG*Q*T*********************NTPAIRESSYQFCSDD************************************NDPPSKLIGQFLNKQKDIGEIVLDMDLEMDELQ*******************************DE***************************************************************ETVFGEDLPEEFTRSKFSALIFIEWASLILIVAALLCSLLIHEIKKKSLWDLKLWKWEVMVLVLICGRLVSGWGIRLIVFFIERNFVLRKRLLYFVYGVKKPVQNCLWLGLVLITWYNLFDSKVERETKSAILSYITKILVCLLIGTIVWLVKTLMIKVLASSFHVSTYFDRIQESLFYQYVIETLSGPALLEIQMHDDEEE******VNKLQNAGAVSP*DLRYAF*********************************GITIDHLHKLNPKNVSAWNMKRLVNMVRHGALITLDEQLPGQPPEADDSANQIRSEYEAKAAARKIFLNVARYGSKHIYLEDLMRFMQEEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFRERRALALTLNDTKTAVKKLHKLVNVVFAIIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEVDGVQMIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPDMGDAIEFCVHITTPSEKIALMRQRIVGYIEGKKEHWCTAPMIILKDVEDFTRLRVAVWPCHKMNHQDMGERWTRRALLVEEMVKIFRELDIQYRLFPLDINVRSVP*******************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		900	2.2.26 [Sep-21-2011]
F4IME2		908	Mechanosensitive ion chan	yes	no	0.935	0.927	0.515	0.0
Q9SYM1		856	Mechanosensitive ion chan	yes	no	0.886	0.932	0.572	0.0
Q9LPG3		881	Mechanosensitive ion chan	no	no	0.868	0.887	0.529	0.0
Q9LH74		881	Mechanosensitive ion chan	no	no	0.868	0.887	0.555	0.0
F4IME1		849	Mechanosensitive ion chan	no	no	0.853	0.904	0.526	0.0
Q9LYG9		734	Mechanosensitive ion chan	no	no	0.643	0.788	0.431	1e-145
Q84M97		742	Mechanosensitive ion chan	no	no	0.627	0.761	0.391	1e-128
O74839		1011	Uncharacterized MscS fami	yes	no	0.578	0.515	0.206	5e-22
O14050		840	Uncharacterized MscS fami	no	no	0.47	0.503	0.223	5e-17
O28726		283	Uncharacterized MscS fami	yes	no	0.12	0.381	0.296	0.0001

>sp\|F4IME2\|MSL8_ARATH Mechanosensitive ion channel protein 8 OS=Arabidopsis thaliana GN=MSL8 PE=2 SV=2	Back alignment and function desciption

 Score =  896 bits (2316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/956 (51%), Positives = 656/956 (68%), Gaps = 114/956 (11%)

Query: 4   LSLNKSFKSHGSYKHIHEKSGRTSSSNASSRGESSILLDEERQKNITAVGAQDTIKMDGG 63
           +    SFKSH SYK I     ++  S         IL D     +   V  Q   K D  
Sbjct: 1   MDFRNSFKSHSSYKQIRSPGDQSEPSPE----HLPILHDHHPDHSGMVVDDQ---KPDST 53

Query: 64  YGGTDNDRHHRLLYNNTPAIRESSYQFCSDDDEDDGEKISERNMRSGDYKRRSIKFTQRE 123
               D+ R       N P  R++SY+F  D+    G       +R+ D  +  I  +++ 
Sbjct: 54  RSSLDDGR-------NAPVERDASYKFWQDNTT--GTSTDHTAVRTSD--KDPIAISRKG 102

Query: 124 DENNKDYN---------DPPSKLI-GQFLNKQ---KDIGEIVLDMDLEMDELQQFTQNNN 170
           D  +  ++         + P+K++ G+ +N+Q   ++  EI LD+D E         N++
Sbjct: 103 DRLSGSFDFVHGKLPVDESPTKMVAGEPVNRQWRGRNNEEITLDVDQE---------NDD 153

Query: 171 CNNNNANTPSSPHST--DVSREIR----------------------------------NQ 194
            ++    TP+S   T  D SRE+R                                  NQ
Sbjct: 154 VSHQTMPTPTSTARTSFDASREMRVSFNVRRAGGAFVAGSVPSSSSHSSSSSSATMRTNQ 213

Query: 195 D-------EILRCTSNNLSFQRRPHTLTATLTRSKTRSRLQDPPPEEIIERIP----KSG 243
           D       E++RCTSN +SFQR+    +  ++R KTRSRLQDPP EE     P    +SG
Sbjct: 214 DQPQLQEEEVVRCTSN-MSFQRK----SELISRVKTRSRLQDPPREE---ETPYSGWRSG 265

Query: 244 QLRSGLLGKMGGDDDDETVFGEDLPEEFTRSKFSALIFIEWASLILIVAALLCSLLIHEI 303
           QL+SGLL  +  D++D+ +  ED+P+E+ R K  A+  ++W SL+ I+AAL CSL I   
Sbjct: 266 QLKSGLLADI--DEEDDPLAEEDVPDEYKRGKLDAITLLQWLSLVAIIAALACSLSIQSW 323

Query: 304 KKKSLWDLKLWKWEVMVLVLICGRLVSGWGIRLIVFFIERNFVLRKRLLYFVYGVKKPVQ 363
           KK  +W+L LWKWEV +LVLICGRLVSGWGIR++VFFIERNF+LRKR+LYFVYGV++ VQ
Sbjct: 324 KKVRVWNLHLWKWEVFLLVLICGRLVSGWGIRIVVFFIERNFLLRKRVLYFVYGVRRAVQ 383

Query: 364 NCLWLGLVLITWYNLFDSKVERETKSAILSYITKILVCLLIGTIVWLVKTLMIKVLASSF 423
           NCLWLGLVL+ W+ LFD KV+RET+S  L Y+TKILVC L+ TI+WL+KTL++KVLASSF
Sbjct: 384 NCLWLGLVLLAWHFLFDKKVQRETRSRFLPYVTKILVCFLLSTILWLIKTLVVKVLASSF 443

Query: 424 HVSTYFDRIQESLFYQYVIETLSGPALLEIQMHDDEEERKTATEVNKLQNAGAVSPPDL- 482
           HVSTYFDRIQE+LF QYVIETLSGP ++E+   ++EEER    E+ K+QNAGA  PPDL 
Sbjct: 444 HVSTYFDRIQEALFNQYVIETLSGPPMIEMSRIEEEEER-AQDEIFKMQNAGANLPPDLC 502

Query: 483 --RYAFAKSGKVIGKSSRDNKGSGKLSRASSKKGTNDHDGITIDHLHKLNPKNVSAWNMK 540
              +   KSG+V+           KLS    K  T++  GI+++HLH++N KN+SAWNMK
Sbjct: 503 AAAFPPGKSGRVMNP---------KLSPIIPKSTTDN--GISMEHLHRMNHKNISAWNMK 551

Query: 541 RLVNMVRHGALITLDEQLPGQPPEADDSANQIRSEYEAKAAARKIFLNVARYGSKHIYLE 600
           RL+ +VR+ +L TLDEQ+     E D+S  QIRSE EAKAAARKIF NV + G+K+IYLE
Sbjct: 552 RLMKIVRNVSLTTLDEQMLESTYE-DESTRQIRSEKEAKAAARKIFKNVEQRGAKYIYLE 610

Query: 601 DLMRFMQEEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFRERRALALTLNDTKTAVKKL 660
           DLMRF++E+EA+KTM LFEG+ EN RISKS+LKNW+VNAFRERRALALTLNDTKTAV KL
Sbjct: 611 DLMRFLREDEAMKTMGLFEGAPENKRISKSALKNWLVNAFRERRALALTLNDTKTAVNKL 670

Query: 661 HKLVNVVFAIIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIH 720
           H ++N+V AI+I+VIWL++L+IA+++ LLF+SSQ+VL+AF+FGNT KT+FE++IFLF++H
Sbjct: 671 HHMINIVTAIVIVVIWLVLLEIASSKVLLFVSSQVVLLAFIFGNTVKTVFESIIFLFIVH 730

Query: 721 PFDVGDRCEVDGVQMIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPDMGDAI 780
           P+DVGDRCE+D VQ++VEEMN+LTTVFLRYDNLKI+YPN +L  K I+N+Y+SPDMGDAI
Sbjct: 731 PYDVGDRCEIDSVQLVVEEMNILTTVFLRYDNLKIMYPNSLLWQKSINNYYRSPDMGDAI 790

Query: 781 EFCVHITTPSEKIALMRQRIVGYIEGKKEHWCTAPMIILKDVEDFTRLRVAVWPCHKMNH 840
           EFCVHITTP EKI++++QRI  YI+ K E+W     II+KD+ED   +R+A+WPCH++NH
Sbjct: 791 EFCVHITTPLEKISVIKQRISNYIDNKPEYWYPQAKIIVKDLEDLHIVRLAIWPCHRINH 850

Query: 841 QDMGERWTRRALLVEEMVKIFRELDIQYRLFPLDINVRSVPAPIVSERMPSSWTNN 896
           QDM ERWTRRA+LVEE++KI  ELDIQ+R +PLDINVR++P  +VS R+P  W+ N
Sbjct: 851 QDMAERWTRRAVLVEEVIKILLELDIQHRFYPLDINVRTMPT-VVSSRVPPGWSQN 905

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SYM1\|MSL6_ARATH Mechanosensitive ion channel protein 6 OS=Arabidopsis thaliana GN=MSL6 PE=1 SV=1	Back alignment and function description

>sp\|Q9LPG3\|MSL4_ARATH Mechanosensitive ion channel protein 4 OS=Arabidopsis thaliana GN=MSL4 PE=3 SV=1	Back alignment and function description

>sp\|Q9LH74\|MSL5_ARATH Mechanosensitive ion channel protein 5 OS=Arabidopsis thaliana GN=MSL5 PE=2 SV=1	Back alignment and function description

>sp\|F4IME1\|MSL7_ARATH Mechanosensitive ion channel protein 7 OS=Arabidopsis thaliana GN=MSL7 PE=3 SV=1	Back alignment and function description

>sp\|Q9LYG9\|MSL10_ARATH Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1	Back alignment and function description

>sp\|Q84M97\|MSL9_ARATH Mechanosensitive ion channel protein 9 OS=Arabidopsis thaliana GN=MSL9 PE=2 SV=1	Back alignment and function description

>sp\|O74839\|YC1B_SCHPO Uncharacterized MscS family protein C1183.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1183.11 PE=1 SV=1	Back alignment and function description

>sp\|O14050\|YEYH_SCHPO Uncharacterized MscS family protein C2C4.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.17c PE=3 SV=1	Back alignment and function description

>sp\|O28726\|Y1546_ARCFU Uncharacterized MscS family protein AF_1546 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1546 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		900
449526483		923	PREDICTED: mechanosensitive ion channel	0.951	0.927	0.590	0.0
449444568		923	PREDICTED: mechanosensitive ion channel	0.951	0.927	0.590	0.0
449454364		955	PREDICTED: mechanosensitive ion channel	0.968	0.913	0.552	0.0
356575444		868	PREDICTED: uncharacterized mscS family p	0.934	0.968	0.559	0.0
356575442		870	PREDICTED: uncharacterized mscS family p	0.94	0.972	0.555	0.0
357444799		926	mscS family protein, putative [Medicago	0.944	0.917	0.535	0.0
225428123		897	PREDICTED: uncharacterized mscS family p	0.941	0.944	0.564	0.0
374110731		908	RecName: Full=Mechanosensitive ion chann	0.935	0.927	0.515	0.0
359474826		1515	PREDICTED: uncharacterized mscS family p	0.848	0.504	0.591	0.0
15218429		856	mechanosensitive channel of small conduc	0.886	0.932	0.572	0.0

>gi\|449526483\|ref\|XP_004170243.1\| PREDICTED: mechanosensitive ion channel protein 8-like [Cucumis sativus]	Back alignment and taxonomy information

 Score = 1029 bits (2660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/943 (59%), Positives = 691/943 (73%), Gaps = 87/943 (9%)

Query: 8   KSFKSHGSYKHIHEKSGRTSSSNASSRGESSILLDEERQKNITAVGAQD----TIKMDGG 63
           KSFKSH SYK++ + SG    ++A+   E   +L + +   +    + D     +K+D  
Sbjct: 6   KSFKSHPSYKYVRKLSG----ADATQDHEHLPILSDHQHSIMAVSDSSDRKEVIVKVDEA 61

Query: 64  YGGTDNDRHHRLLYNNTPAIRESSYQFCSDDDEDDGEKISERNMRSGDYKRRS-IKFTQR 122
              T   R   L+  +    RESSY F +D D       + RN   G  K     +F Q 
Sbjct: 62  DASTL--RATDLVNGSGTIWRESSYDFWNDSD-------NRRNYGEGGAKTTDDFEFRQ- 111

Query: 123 EDENNKDYNDPPSKLIGQFLNKQKDIGEIVLDMDLEMDELQQ------------------ 164
              + KD  DPPSKLIGQFL+KQK  GE+ LDMD+EM EL Q                  
Sbjct: 112 ---HRKDVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTPLSTVAESPMRRSSR 168

Query: 165 -----------FTQNNNCNNNNANTP-------SSPHSTDVSREIRNQD-----EILRCT 201
                       ++N++    + ++P         P   D      N +     E+LRC+
Sbjct: 169 ELKVSFESISEISENDSMRRRHRDSPLDEEHRGQQPRQCDRRAHGSNGEDDGAAEVLRCS 228

Query: 202 SN-----NLSFQRRPHTLTATLTRSKTRSRLQDPPPEEIIE--RIPKSGQLRSGLLGKMG 254
           SN     ++SFQR+     ++L R+KT+SRL DPP  +     R+PKSGQ+RSGL+ K  
Sbjct: 229 SNSSFQRDVSFQRK-----SSLLRAKTKSRLLDPPEHQDRRSGRVPKSGQVRSGLISKAL 283

Query: 255 GDDDDETVFGEDLPEEFTRSKFSALIFIEWASLILIVAALLCSLLIHEIKKKSLWDLKLW 314
            ++DD+    EDLP+E+ ++    L  ++WASLILI+AAL+C+L I   ++K LW L++W
Sbjct: 284 DEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALVCTLTIRYWRRKKLWKLEVW 343

Query: 315 KWEVMVLVLICGRLVSGWGIRLIVFFIERNFVLRKRLLYFVYGVKKPVQNCLWLGLVLIT 374
           KWEVM+LVLICGRLVSGWGIR+IVFFIERNF+LRKR+LYFVYGV+K VQNCLWLGLVLI 
Sbjct: 344 KWEVMILVLICGRLVSGWGIRVIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIA 403

Query: 375 WYNLFDSKVERETKSAILSYITKILVCLLIGTIVWLVKTLMIKVLASSFHVSTYFDRIQE 434
           W  LFD KV+RE KS  L Y+TK+LVCLL+ T+VWLVKTLM+KVLASSFHVSTYFDRIQ+
Sbjct: 404 WNFLFDDKVQREVKSNALEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQD 463

Query: 435 SLFYQYVIETLSGPALLEIQMHDDEEERKTATEVNKLQNAGAVSPPDLRY-AFA---KSG 490
           +LF QYVIETLSGP L+EIQ  ++EEE + A EV KLQNAGA  PPDL+  AF+   K G
Sbjct: 464 ALFNQYVIETLSGPPLIEIQ-KNEEEEERLAEEVIKLQNAGATIPPDLKATAFSTAQKGG 522

Query: 491 KVIGKSS--RDNKG-SGKLSRASSKKGTNDHDGITIDHLHKLNPKNVSAWNMKRLVNMVR 547
           +VIG     +  +G SGKLSR  SKKG ++  GITIDHLHKL+PKNVSAWNMKRL+N+VR
Sbjct: 523 RVIGSGGLQKSPRGRSGKLSRTLSKKGGDE--GITIDHLHKLSPKNVSAWNMKRLMNIVR 580

Query: 548 HGALITLDEQLPGQPPEADDSANQIRSEYEAKAAARKIFLNVARYGSKHIYLEDLMRFMQ 607
           HG L TLDEQ+     E D+S  +I+SEYEAK AA+KIFLNVAR GSK+IYLEDLMRFM+
Sbjct: 581 HGTLSTLDEQIKDTAHE-DESTTEIKSEYEAKVAAKKIFLNVARNGSKYIYLEDLMRFME 639

Query: 608 EEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFRERRALALTLNDTKTAVKKLHKLVNVV 667
           ++EA KTM LFEG+ E+ +ISKSSLKNWVVNAFRERRALALTLNDTKTAV KLH++VN++
Sbjct: 640 KDEASKTMGLFEGACESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNIL 699

Query: 668 FAIIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDR 727
            ++IILVIWLLIL IAT++FLLF++SQLVLVAFVFGNTCKT+FE++IFLFV+HPFDVGDR
Sbjct: 700 VSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFESIIFLFVMHPFDVGDR 759

Query: 728 CEVDGVQMIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPDMGDAIEFCVHIT 787
           CE+DGVQMIVEEMN+LTT+FLRYDN KII+PN VL+TK IHNFY+SPDMGD IEFC+HI+
Sbjct: 760 CEIDGVQMIVEEMNILTTIFLRYDNQKIIFPNSVLATKAIHNFYRSPDMGDGIEFCLHIS 819

Query: 788 TPSEKIALMRQRIVGYIEGKKEHWCTAPMIILKDVEDFTRLRVAVWPCHKMNHQDMGERW 847
           TP EKIA+MRQRI+ YIEGKKEHWC APMI+LKDVE+  R+R+A+W  H+MNHQDMGERW
Sbjct: 820 TPPEKIAIMRQRIISYIEGKKEHWCPAPMIVLKDVEELNRMRIAIWLTHRMNHQDMGERW 879

Query: 848 TRRALLVEEMVKIFRELDIQYRLFPLDINVRSVPAPIVSERMP 890
           TRRALLVEE+VKIF+ELD+QYRL PLDINVRS+P P+ S  +P
Sbjct: 880 TRRALLVEELVKIFQELDLQYRLLPLDINVRSLP-PVNSTTLP 921

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449444568\|ref\|XP_004140046.1\| PREDICTED: mechanosensitive ion channel protein 8-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449454364\|ref\|XP_004144925.1\| PREDICTED: mechanosensitive ion channel protein 6-like [Cucumis sativus] gi\|449529323\|ref\|XP_004171649.1\| PREDICTED: mechanosensitive ion channel protein 6-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356575444\|ref\|XP_003555851.1\| PREDICTED: uncharacterized mscS family protein At1g78610-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|356575442\|ref\|XP_003555850.1\| PREDICTED: uncharacterized mscS family protein At1g78610-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|357444799\|ref\|XP_003592677.1\| mscS family protein, putative [Medicago truncatula] gi\|355481725\|gb\|AES62928.1\| mscS family protein, putative [Medicago truncatula]	Back alignment and taxonomy information

>gi\|225428123\|ref\|XP_002278453.1\| PREDICTED: uncharacterized mscS family protein At1g78610-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|374110731\|sp\|F4IME2.2\|MSL8_ARATH RecName: Full=Mechanosensitive ion channel protein 8; AltName: Full=Mechanosensitive channel of small conductance-like 8; AltName: Full=MscS-Like protein 8	Back alignment and taxonomy information

>gi\|359474826\|ref\|XP_002280985.2\| PREDICTED: uncharacterized mscS family protein At1g78610-like [Vitis vinifera]	Back alignment and taxonomy information

>gi|15218429|ref|NP_177982.1| mechanosensitive channel of small conductance-like 6 [Arabidopsis thaliana] gi|75213461|sp|Q9SYM1.1|MSL6_ARATH RecName: Full=Mechanosensitive ion channel protein 6; AltName: Full=Mechanosensitive channel of small conductance-like 6; AltName: Full=MscS-Like protein 6 gi|4836872|gb|AAD30575.1|AC007260_6 Hypothetical protein [Arabidopsis thaliana] gi|332198006|gb|AEE36127.1| mechanosensitive channel of small conductance-like 6 [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		900
TAIR\|locus:2202965		856	MSL6 "mechanosensitive channel	0.893	0.939	0.529	1.5e-218
TAIR\|locus:2099382		881	MSL5 "mechanosensitive channel	0.764	0.780	0.546	5.8e-211
TAIR\|locus:2024927		881	MSL4 "mechanosensitive channel	0.784	0.801	0.520	2.1e-204
TAIR\|locus:2827671		849	AT2G17000 "AT2G17000" [Arabido	0.857	0.909	0.487	5.7e-189
TAIR\|locus:2143069		734	MSL10 "mechanosensitive channe	0.414	0.508	0.419	6.8e-117
TAIR\|locus:2180811		742	MSL9 "mechanosensitive channel	0.415	0.504	0.364	4.5e-107
ASPGD\|ASPL0000069490		944	AN7571 [Emericella nidulans (t	0.325	0.310	0.237	2.4e-20
ASPGD\|ASPL0000007479		943	AN6053 [Emericella nidulans (t	0.364	0.347	0.243	3.2e-18
UNIPROTKB\|G4NH50		952	MGG_03937 "Serine/threonine pr	0.303	0.286	0.265	2.3e-15
DICTYBASE\|DDB_G0277253		870	DDB_G0277253 "mechanosensitive	0.283	0.293	0.210	3e-14

TAIR\|locus:2202965 MSL6 "mechanosensitive channel of small conductance-like 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2111 (748.2 bits), Expect = 1.5e-218, P = 1.5e-218
 Identities = 442/834 (52%), Positives = 550/834 (65%)

Query:    84 RESSYQFCSDDDEDDGEKISERNMRSGDYKRRSIKFTQREDENNKDYN---DPPSKLIGQ 140
             R+ SY F +D +   G      N  + D  R +    +++ +   ++    DPP+KLIGQ
Sbjct:    35 RDGSYDFWTDGE---GNLNKGHNAAAVDSDRSAATTGEQQKDEGFEFRRGEDPPTKLIGQ 91

Query:   141 FLNKQKDIGEIVLDMDLEMDELQQFTQXXXXXXXXXXTPSSPHSTDVSRE-IRNQD--EI 197
             FL+KQ+  GEI LDMDL MDELQ              T   P     SR    N D  E+
Sbjct:    92 FLHKQQASGEICLDMDLGMDELQSRGLTPVSESPRVSTKRDPVGRRDSRSNTNNNDDGEV 151

Query:   198 LRCTSNNLSFQRRPHTLTATLTRSKTRS----RLQDXXXXXXXXXXXKSGQLRSXXXXXX 253
             ++C+ NN   QR   TL    TRS+       +L             KSGQ++S      
Sbjct:   152 VKCSGNNAPIQRSSSTLLKMRTRSRLSDPPTPQLPPQTADMKSGRIPKSGQMKSGFFGKS 211

Query:   254 XXXXXXETV---FG-EDLPEEFTRSKFSALIFIEWASLILIVAALLCSLLIHEIXXXXXX 309
                   E     F  EDLPEE+ + K S  I +EW SLILI+A  +C+L I  +      
Sbjct:   212 PKTQGEEEEDDPFAAEDLPEEYRKDKLSLWIVLEWLSLILIIAGFVCTLAIPSLRKKKLW 271

Query:   310 XXXXXXXEVMVLVLICGRLVSGWGIRLIVFFIERNFVLRKRLLYFVYGVKKPVQNCLWLG 369
                    E MVLVLICGRLVS W ++++VFFIERNF+LRKR+LYFVYGV+K VQNCLWLG
Sbjct:   272 ELQLWKWESMVLVLICGRLVSSWIVKIVVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLG 331

Query:   370 LVLITWYNLFDSKVERETKSAILSYITKILVCLLIGTIVWLVKTLMIKVLASSFHVSTYF 429
             LVL+ W+ LFD KV +   +  L  +TKI VCLL+G ++WLVKTL++KVLASSFH+STYF
Sbjct:   332 LVLLAWHFLFDEKVAKAANTKALRVVTKIFVCLLVGFLLWLVKTLLVKVLASSFHMSTYF 391

Query:   430 DRIQESLFYQYVIETLSGPALLEIQMHDDEEERKTATEVNKLQNAGAVSPPDLRYAFAKS 489
             DRIQESLF QYVIETLSGP L+EIQ +++EEER  + EV K QN G V   +++    KS
Sbjct:   392 DRIQESLFTQYVIETLSGPPLIEIQKNEEEEER-ISVEVKKFQNPGGV---EIQSGAQKS 447

Query:   490 GKVIGKSSRDNKGSGKLSRASSKKGTNDHDGITIDHLHKLNPKNVSAWNMKRLVNMVRHG 549
                 GKS      S  LS      G N   GITID LHKLNPKNVSAW MKRL+N++R+G
Sbjct:   448 PMKTGKSPFL---SHVLSNGGGGGGENK--GITIDSLHKLNPKNVSAWKMKRLMNIIRNG 502

Query:   550 ALITLDEQLPGQPPEADDSANQIRSEYEAKAAARKIFLNVARYGSKHIYLEDLMRFMQEE 609
             +L TLDEQL   P   DD  NQIRSE+EAK AARKIF NVA+ GSK IY  D+MRF+ ++
Sbjct:   503 SLTTLDEQLQ-DPSLDDDKGNQIRSEFEAKLAARKIFHNVAKPGSKFIYANDIMRFLPDD 561

Query:   610 EAVKTMSLFEGSKENGRISKSSLKNWVVNAFRERRALALTLNDTKTAVKKLHKLVNVVFA 669
             EA+KT+SLFEG+ E  RISKSSLKNWVVNAFRERRALALTLNDTKTAV +LHK+VN+V  
Sbjct:   562 EALKTLSLFEGASETNRISKSSLKNWVVNAFRERRALALTLNDTKTAVNRLHKMVNIVVG 621

Query:   670 XXXXXXXXXXXXXATTEXXXXXXXXXXXXXXXXGNTCKTIFEALIFLFVIHPFDVGDRCE 729
                           +T+                GN CK +FE++I+LFVIHPFDVGDRCE
Sbjct:   622 IIILVIWLIILGITSTKFLVVMSSQVVVVAFIFGNMCKIVFESIIYLFVIHPFDVGDRCE 681

Query:   730 VDGVQMIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPDMGDAIEFCVHITTP 789
             +DGVQM+VEEMN+LTTVFLR+DN K++YPN +L TK I N+Y+SPDMGD IEF +HITTP
Sbjct:   682 IDGVQMVVEEMNILTTVFLRFDNQKVVYPNSLLWTKSIGNYYRSPDMGDGIEFSIHITTP 741

Query:   790 SEKIALMRQRIVGYIEGKKEHWCTAPMIILKDVEDFTRLRVAVWPCHKMNHQDMGERWTR 849
             +EKI L++QRI  YIEGKK+HW  APMI+ KD+E    +R+AVWP H+MNHQDMGE+W R
Sbjct:   742 AEKIILIKQRITSYIEGKKDHWYPAPMIVFKDMESLNSVRIAVWPTHRMNHQDMGEKWAR 801

Query:   850 RALLVEEMVKIFRELDIQYRLFPLDINVRSVPAPI---VSERMPSSWTNNTSTS 900
             R+ LVEE+ KI RELDI+YRL+PLDINVR++P      VS+R+P +W+   S S
Sbjct:   802 RSQLVEEIAKICRELDIEYRLYPLDINVRNLPTSTALPVSDRLPPNWSAPASGS 855

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR\|locus:2099382 MSL5 "mechanosensitive channel of small conductance-like 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2024927 MSL4 "mechanosensitive channel of small conductance-like 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2827671 AT2G17000 "AT2G17000" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2143069 MSL10 "mechanosensitive channel of small conductance-like 10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2180811 MSL9 "mechanosensitive channel of small conductance-like 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000069490 AN7571 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000007479 AN6053 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|G4NH50 MGG_03937 "Serine/threonine protein kinase" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0277253 DDB_G0277253 "mechanosensitive ion channel domain-containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4IME2	MSL8_ARATH	No assigned EC number	0.5156	0.9355	0.9273	yes	no
Q9SYM1	MSL6_ARATH	No assigned EC number	0.5726	0.8866	0.9322	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036185001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (858 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		900
COG0668		316	COG0668, MscS, Small-conductance mechanosensitive	3e-16
pfam00924		202	pfam00924, MS_channel, Mechanosensitive ion channe	4e-14

>gnl\|CDD\|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

 Score = 80.3 bits (198), Expect = 3e-16
 Identities = 48/245 (19%), Positives = 99/245 (40%), Gaps = 11/245 (4%)

Query: 625 GRISKSSLKNWVVNAFRERRALALTLNDTKTAVKKLHKLVNVVFAIIILVIWLLILKIAT 684
             +  + L   ++ +    +AL   L    T    L  L+ ++  ++ L+I L +L +  
Sbjct: 52  AFLLIAYLVKLLLRSLLLLKALIRRLARETTLSVFLSNLLRILILVVALLIVLSVLGVQV 111

Query: 685 TEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEV-DGVQMIVEEMNVL 743
           T  L  L +  + +     +    +    IFL +  PF VGD  E+  GV+  VE++ + 
Sbjct: 112 TSLLAGLGALGLAIGLALQDLLSNLIAG-IFLLLERPFKVGDWIEIGSGVEGTVEDIGLR 170

Query: 744 TTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPDMGDAIEFCVHITTPSEKIALMRQRIVGY 803
           +T     D   +  PN  L T  + N+ + P     ++  V   +  EK   + + ++  
Sbjct: 171 STTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKILKEVLEE 230

Query: 804 IEGKKEHWCTAPMIILKDVEDFT-RLRVAVWPCHKMNHQDMGERWTRRALLVEEMVKIFR 862
           +    +     P+I + ++ D    +RV  W        +  + W+ +  L   + +   
Sbjct: 231 LPEVLKIE-PEPVIGVSELGDSGINIRVRFWT-------NPEDLWSVQRELNLRIKEALE 282

Query: 863 ELDIQ 867
           E  I+
Sbjct: 283 EAGIE 287

Length = 316

>gnl\|CDD\|201506 pfam00924, MS_channel, Mechanosensitive ion channel	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		900
KOG4629		714	consensus Predicted mechanosensitive ion channel [	100.0
PRK10334		286	mechanosensitive channel MscS; Provisional	100.0
PRK11281		1113	hypothetical protein; Provisional	100.0
PRK10929		1109	putative mechanosensitive channel protein; Provisi	100.0
PF00924		206	MS_channel: Mechanosensitive ion channel; InterPro	100.0
PRK11465		741	putative mechanosensitive channel protein; Provisi	99.97
COG3264		835	Small-conductance mechanosensitive channel [Cell e	99.97
COG0668		316	MscS Small-conductance mechanosensitive channel [C	99.97
COG5126		160	FRQ1 Ca2+-binding protein (EF-Hand superfamily) [S	83.5
KOG0044		193	consensus Ca2+ sensor (EF-Hand superfamily) [Signa	82.26
cd00052		67	EH Eps15 homology domain; found in proteins implic	80.45

>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

Probab=100.00  E-value=3.2e-110  Score=974.71  Aligned_cols=644  Identities=49%  Similarity=0.813  Sum_probs=600.7

Q ss_pred             ccCCCceeeecCCccccccCcCcccccccccccccccCCCCCcccccCCCCCCCCccccCCCCCCCCCCcccCCCCCchh
Q 002608          191 IRNQDEILRCTSNNLSFQRRPHTLTATLTRSKTRSRLQDPPPEEIIERIPKSGQLRSGLLGKMGGDDDDETVFGEDLPEE  270 (900)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~d~~~~~~~~~~  270 (900)
                      ..+.+++++||++.++         +.+.+.+++||++|||-+.-.+++|++++..+|..++...|+||+++.++++++.
T Consensus        70 ~~~~~~~v~~t~~~~~---------~~~~~~~~~s~~f~p~~~~~~n~~~~~~~~~s~~~a~~~~~~e~~~~~~~~l~~~  140 (714)
T KOG4629|consen   70 RTEYGETVRCTSRKMP---------SMIFFASKRSRDFDPAEPNNRNRFSNSGETTSGELAPSEKDEEESIFSEEKLPDE  140 (714)
T ss_pred             ccCCcceEEeccccCh---------HhhhhhhhcccccCCCCCCCCCcccCccccccccccCCcccccccccchhccchh
Confidence            3467899999997442         5688899999999987555457999999999999998766899999999999999


Q ss_pred             hhhcccchhhHHHHHHHHHHHHHHhhhheecccCCceeeehhhHHHHHHHHHHHhhhhhhhhhhhhhhheeehhhhheee
Q 002608          271 FTRSKFSALIFIEWASLILIVAALLCSLLIHEIKKKSLWDLKLWKWEVMVLVLICGRLVSGWGIRLIVFFIERNFVLRKR  350 (900)
Q Consensus       271 ~k~~~~~~~~~~~w~~~i~~i~~Lv~sl~i~~~~~~~lw~~~lw~W~v~~lvl~~grlVs~w~~~~~v~~ie~nfllrk~  350 (900)
                      .++.+.+++++++|+.+++++++++|+|+|+......+|.+..|+|++.+++++||++++.|.+.+++|++++|+++|++
T Consensus       141 ~~~~~~~~~~~i~~I~~~~iv~~lv~~l~i~~~~~~~~~~~~~~kw~~~~~v~~~~~lv~~~~~~~vvf~~~~n~~~r~~  220 (714)
T KOG4629|consen  141 TRRSLLSSITVITWILLVLIVSSLVCSLGIHVHRLVTLWSLILWKWLVTLLVRITAVLVSSWFAALVVFLIESNFLRRKK  220 (714)
T ss_pred             hhhcccccHHHHHHHHHHHHHHHHHhhhhhheecccceEEEEeeeehhhhHHHHHHHHHHhhHHHHHHHHhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeccccchhHHHHHH-HHHHHhhhhccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHH
Q 002608          351 LLYFVYGVKKPVQNCLWLG-LVLITWYNLFDSKVERETKSAILSYITKILVCLLIGTIVWLVKTLMIKVLASSFHVSTYF  429 (900)
Q Consensus       351 vlyfv~gl~k~v~~~lWl~-~vli~w~~l~~~~~~~~~~~~~l~~v~kvL~~llv~~~l~l~kkllvq~iA~sFH~~ty~  429 (900)
                      ++||++|+++.+|+|+|++ +++++|+.+|+..+.+.++.+.+.+++++ +|+|+.++.|++||+++|++|++||+++|+
T Consensus       221 ~l~~v~~~~~~vq~~~~l~~lv~law~~l~d~~v~~~~r~~~l~~~~~~-i~lli~~~~~lv~ti~~kv~as~f~~s~~~  299 (714)
T KOG4629|consen  221 VLYFVYGLRKFVQTGIWLGKLVLLAWIFLFDKIVFRKTRAKFLAFVTML-ITLLITEFMWLVKTILMKVIASSFHRSTYF  299 (714)
T ss_pred             HHHHHhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhh-hhhhHHHHHhhchhhhhHHHHHHHhHHHHH
Confidence            9999999999999999999 99999999999999888777789999999 999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHhhcCCchhhhcccchHHHHhhHHHHHhhhhCCCCCCCccccccccCCcccCCCCCCCCCCCccccc
Q 002608          430 DRIQESLFYQYVIETLSGPALLEIQMHDDEEERKTATEVNKLQNAGAVSPPDLRYAFAKSGKVIGKSSRDNKGSGKLSRA  509 (900)
Q Consensus       430 dRIqes~fn~y~L~tLs~~~l~~~~~~~~e~~~~~~~~~~~~~~~g~~~p~~~~~~~~ksg~~~~~~~~~~~~~~~~~~~  509 (900)
                      +||||++|+||+|++|+|||+.        |            ++|+..+.+.           ..++       ..++.
T Consensus       300 ~rI~e~~f~q~~l~~Lsg~p~~--------e------------~~gr~s~~~~-----------~~s~-------~~~r~  341 (714)
T KOG4629|consen  300 SRIQESVFTQEVLETLSGPPRE--------E------------DVGRESTFRA-----------IFSP-------GLSRS  341 (714)
T ss_pred             hhcchhhhhHHHHHHhcCCccc--------c------------ccccccccee-----------eccc-------cccch
Confidence            9999999999999999999871        1            2344322211           1111       11222


Q ss_pred             ccCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHhcCccccccccCCCCCCCCCcchhhccCHHHHHHHHHHHHHHh
Q 002608          510 SSKKGTNDHDGITIDHLHKLNPKNVSAWNMKRLVNMVRHGALITLDEQLPGQPPEADDSANQIRSEYEAKAAARKIFLNV  589 (900)
Q Consensus       510 ~~k~~~~~~~~I~~~~l~~~n~~~vsaw~mk~l~~~vr~~~lst~~~~l~~~~~~~~~~~~~i~S~~eAkalArrIF~~v  589 (900)
                      +.       .+|+++++|++|..++|||+|+++|+.++.+++++++.+.+.+. .++....+++|+++|+++|++||.++
T Consensus       342 ~s-------~~i~~~~l~~~~~~~~sa~~~~~~~~~~~~~~~t~l~~~~~~s~-~~~~~~~~i~s~~~a~~aA~~iF~nv  413 (714)
T KOG4629|consen  342 GS-------AKIGMDKLHKIKKKNVSAWNMRRLMTILAAGGLTTLSPGFQLST-SKDSSIIEIRSEKEAKIAARKIFKNV  413 (714)
T ss_pred             hh-------cccccchhhhhhHhhhcHhhhhHHHHHHhccCcccCCccccccc-cccchhhhhhhhhhHHHHHHHHHhcc
Confidence            21       12889999999999999999999999999999999999998733 26777889999999999999999999


Q ss_pred             hccCCccccHhHHHhhCCHHHHHHHhHhhcccccccccchHHHHHHHHHHHHHhHhhhhhccchhHHHHHHHHHHHHHHH
Q 002608          590 ARYGSKHIYLEDLMRFMQEEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFRERRALALTLNDTKTAVKKLHKLVNVVFA  669 (900)
Q Consensus       590 ~~~G~~~I~~eDl~~F~~~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~i~~ERk~L~~SLkD~~taV~~L~~Il~viv~  669 (900)
                      +.||..+++++|+.+|+++|+|+.++.+|++.++.+ |+++.+++|++++|+||++|+++|+|++++|++|++++++++.
T Consensus       414 ~~p~~~~i~ld~~~~f~~~E~a~~~~slfe~~~~~~-Itrs~~~~~iv~~~~ERk~L~~tL~d~~taV~kL~~il~~Iv~  492 (714)
T KOG4629|consen  414 AKPGVILIDLDDLLRFMGDEEAERAFSLFEGASDEN-ITRSSFKEWIVNIYRERKALARTLNDTKTAVNKLDRILNFIVA  492 (714)
T ss_pred             CCCCccchhhhhhhhcCCHHHHHHHHHhhhhhcccC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999987666 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcCCccCCCEEEEcCeEEEEEEEeeEEEEEEE
Q 002608          670 IIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEVDGVQMIVEEMNVLTTVFLR  749 (900)
Q Consensus       670 II~iii~L~ilGi~~t~lla~~Gs~gLaLgFafq~tikn~f~SgIFLfv~hPFdVGDrI~IdGv~G~VeEI~LlsTvfrt  749 (900)
                      ++++++++..+|+++.++++.++++.++++|+|+++++++|.|+||+|+.|||||||||.|||++++|+||+|++|+|.+
T Consensus       493 vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~VDg~~~vVeemnLlsTvF~~  572 (714)
T KOG4629|consen  493 VVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVVDGVNLVVEEMNLLSTVFLR  572 (714)
T ss_pred             HHHHHHHHHHHcccceeeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEEeceEEEEEEeccceEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCcEEEEecccccCCcEEeeecCCCceEEEEEEEeeCCCHHHHHHHHHHHHHHHhcCCccccCCCEEEEEecCCCceeE
Q 002608          750 YDNLKIIYPNGVLSTKPIHNFYQSPDMGDAIEFCVHITTPSEKIALMRQRIVGYIEGKKEHWCTAPMIILKDVEDFTRLR  829 (900)
Q Consensus       750 ~DG~~V~IPNS~L~tk~I~N~SRS~~~~~~I~~~V~~~Td~ekIe~Lke~I~~~l~s~~~~~~p~p~V~v~~i~d~n~l~  829 (900)
                      +||++|+|||++|++++|.|++||+.|.+.++|.++..|+++|++.|+++|.+|++++|++|+|.+.+.+.++++.|++.
T Consensus       573 ~dg~kI~~PNS~L~~k~I~N~rRS~~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~~~~~~p~~~~~i~~~e~~n~v~  652 (714)
T KOG4629|consen  573 VDGRKIFIPNSVLWTKAISNYRRSPDMGDEVEFLISSSTPFEKIERLKERIAEYLKSSPDDYYPDLMVVIEEIEDLNSVK  652 (714)
T ss_pred             ECCeEEEeecHHHHhhhhhhhhcCccccccEEEEecCCCCHHHHHHHHHHHHHHHhcCccccccchhhHHHhhhhcCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEecCccChhhHHHHHHHHHHHHHHHHHHCCCccccCceEEEeccCCCCCCCCCCCCC
Q 002608          830 VAVWPCHKMNHQDMGERWTRRALLVEEMVKIFRELDIQYRLFPLDINVRSVPAPIVSERMPSS  892 (900)
Q Consensus       830 L~V~i~~k~N~Qn~~~r~~rRsel~~aI~k~L~elGIey~~Pp~~V~i~~~p~p~~~~~~P~~  892 (900)
                      +++++.|+.||||+.++|.||.++++++.+.|+++||+|.++|+++++.+.| |+.+++.||+
T Consensus       653 i~v~~~h~~n~Qd~~~~~~Rr~~~~~~l~~~~~eLdI~y~l~p~~in~~~~~-~~~~d~~~~~  714 (714)
T KOG4629|consen  653 ICVVVQHKINFQDMKERWSRRTEFVSALTKIMRELDIEYTLYPLDINLKNLP-PVSSDRSPPM  714 (714)
T ss_pred             EEEEEEeecchhhHHHHHhhHHHHHHHHHHHHHHcCcceeecCcchhhhcCC-CcccCCCCCC
Confidence            9999999999999999999999999999999999999999999999999998 7888998874

>PRK10334 mechanosensitive channel MscS; Provisional	Back alignment and domain information

>PRK11281 hypothetical protein; Provisional	Back alignment and domain information

>PRK10929 putative mechanosensitive channel protein; Provisional	Back alignment and domain information

>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation	Back alignment and domain information

>PRK11465 putative mechanosensitive channel protein; Provisional	Back alignment and domain information

>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]	Back alignment and domain information

>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]	Back alignment and domain information

>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		900
2vv5_A		286	MSCS, small-conductance mechanosensitive channel;	2e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A Length = 286	Back alignment and structure

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 4/143 (2%)

Query: 632 LKNWVVNAFRERRALALTLNDTKTAVKKLHKLVNVVFAIIILVIWLLILKIATTEFLLFL 691
           +   + NA    R +     D  T    L  LV        L+  L  + + T   +  L
Sbjct: 44  IARMISNAVN--RLMISRKID-ATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVL 100

Query: 692 SSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEVDGVQMIVEEMNVLTTVFLRYD 751
            +  ++V      +      A + L +  PF  G+  ++ GV   V  + + +T     D
Sbjct: 101 GAAGLVVGLALQGSLSN-LAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTAD 159

Query: 752 NLKIIYPNGVLSTKPIHNFYQSP 774
              I+ PNG +    I NF + P
Sbjct: 160 GKIIVIPNGKIIAGNIINFSREP 182

PyMOL of 2vv5

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		900
d2vv5a1		67	b.38.1.3 (A:113-179) Mechanosensitive channel prot	6e-13

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]} Length = 67	Back information, alignment and structure


class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

 Score = 62.1 bits (151), Expect = 6e-13
 Identities = 17/61 (27%), Positives = 27/61 (44%)

Query: 710 FEALIFLFVIHPFDVGDRCEVDGVQMIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHN 769
             A + L +  PF  G+  ++ GV   V  + + +T     D   I+ PNG +    I N
Sbjct: 6   LAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIIN 65

Query: 770 F 770
           F
Sbjct: 66  F 66

PyMOL of d2vv5a1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		900
d2vv5a1		67	Mechanosensitive channel protein MscS (YggB), midd	99.57
d2vv5a2		101	Mechanosensitive channel protein MscS (YggB), C-te	99.13
d2vv5a3		86	Mechanosensitive channel protein MscS (YggB), tran	97.59
d1tiza_		67	Calmodulin-related protein T21P5.17 {Thale cress (	89.81
d1xo5a_		180	Calcium- and integrin-binding protein, CIB {Human	89.1
d1g8ia_		187	Frequenin (neuronal calcium sensor 1) {Human (Homo	88.86
d1fpwa_		190	Frequenin (neuronal calcium sensor 1) {Baker's yea	87.38
d2sasa_		185	Sarcoplasmic calcium-binding protein {Amphioxus (B	86.25
d2scpa_		174	Sarcoplasmic calcium-binding protein {Sandworm (Ne	84.45
d1c7va_		68	Calcium vector protein {Amphioxus (Branchiostoma l	81.92
d1jfja_		134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	81.13

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.5e-15  Score=119.72  Aligned_cols=67  Identities=25%  Similarity=0.435  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEEEEEEEEEEEEEECCCEEEEECCCCCCCCEEEEE
Q ss_conf             67878887887754418736898899969279999994289999970891999846423488489300
Q 002608          704 NTCKTIFEALIFLFVIHPFDVGDRCEVDGVQMIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFY  771 (900)
Q Consensus       704 ~tiknvf~SgIFIfv~hPFdVGDrI~Idg~~G~VeeIsLlsTvfrt~DG~~V~IPNSvL~tk~I~N~S  771 (900)
                      .+++|++ ||++|++++||++||||+++|..|+|++|+|++|++++.||+.++|||+.+++++|.|||
T Consensus         1 GtlsN~~-sGi~i~~~~pf~vGD~I~i~~~~G~V~~I~l~~T~l~~~dg~~i~iPN~~~~~~~i~N~S   67 (67)
T d2vv5a1           1 GSLSNLA-AGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFS   67 (67)
T ss_dssp             HHHHHHH-HHHHHHTTCSSCTTCEEESSSCEEEEEEECSSEEEEECTTSCEEEEEHHHHHTSCEEESS
T ss_pred             CCHHHHH-HHHHHEEECCCCCCCEEEECCEEEEEEEEECEEEEEECCCCCEEEEECHHHCCCCCEECC
T ss_conf             9479999-885610407832899999999899999995439999914998999988897088439795

PyMOL of d2vv5a1

>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}	Back information, alignment and structure

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]}	Back information, alignment and structure

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}	Back information, alignment and structure

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}	Back information, alignment and structure