Citrus Sinensis ID: 002636

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------90
MGSPSHKGSEYLPPPPPIIPPNVVPLQSGKVAAPAPKRLPMARRNHGTKGTPMTLLTNHFEVRMRQTEGYFCHYSVALFYEDGHPVDGKGIGRKILDKVQETYSHELEGKHFAYDGEKSLFTLGSFQRKKLEFTIVVEDLSSNRTARNDSPGGDGSPGEGDRKRMRRPSRSKVIRVEISYAAKIPMQAIANALRGQETEHFQEAMRVLDIILRQNAANQGCLLVRQSFFHNNPRNFADLGGGVMGCRGFHSSFRATQSGLSLNMDVSTTMIVKPGPVVNFLLANQNVREPHQIDWNKAKRVLKNLRINTNHSNTEYKITGLSDLPCNQQTFSLKQKSGHNGDSDAIEITVYEYFVNNRHIKLEYSADFPCINVGKPKRASYIPLELCTLVSLQRYTKALSNQQRASLVEKSRQKPQERMGVLTEAMRRNNYGADQMLRSFGISIGTQFTQVEGRTLPAPKLKVGNGEDFFPRGGRWNFNNKQLVEPMQIKWWAIVNFSARCDIRSLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPTKVNDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGRSDLPSIAAVVSSRQWPSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCTFLQIEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGRPENVPPGTVVDKGVCHPRNNDFYLCAHAGMIGTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIKFDEMSDTSSSHNAMTSAGSIPVPELPVLHERVCNSMFFC
cccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEcccEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccEEEEEccccEEcccccccccEEEEEEEEccccccccccccccccccccccccccccccccccEEEEEEEEEccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEcccEEEcccccccEEEEEEcccccEEccccHHHHHHHHccccccccccHHHHHHHccccEEEEcccccEEEEEEccccccccccccccccccccccccccEEEHHHHHHHcccccccccccccEEEEccccccccccccEEEEccccHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHcccccccccEEEEEEEcccccEEccccccccccccEEEcccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccEEEccHHHHcccHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHccccccccEEEccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEcccccccccccccEEEEEEEcccccccEEEEEEEEccccEEEccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHccccccccccEEEEEEEEccccccccccccccccccEEEccccccccccEEEEEccccccccccccccEEEEccccccHHHHHHHHHHHHcccccccccEEcccHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHcccccccEEEc
cccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEcccccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccEEcccccccccEEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEEEEccHHHHHHHHcccccccHHHHHHHHHHHHHHccHcccccccccccccccccccccccccEEEEccccccccccccccEEEEEccHHHEccccHHHHHHHHHHccccccHHHHHHHHHHHcccEEEEEccccEEEEEccccccccccEccEEEccccccccccEEEEHHHHHHHHcccEEEccccccccccccccccccccHHHHHHHcHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHcccEEccccEEEEEEEcccccEEEccccEEcccccEEEccccEEEccEEEEEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEcccccccEEEEEEEEcccEEEEEEEEEccccccHHHHHHEEEEEEEEccccccEHHccccccccccccccEEEEEcccccccccccccccEEEEEEccccccccHHEEEEEcccHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccEEEEEEccccHcHHHHHHHHHHccccccccEEEEEEEcccccEEcccccccccccccEEcccccccccccEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHcHHHHHEEEEc
mgspshkgseylpppppiippnvvplqsgkvaapapkrlpmarrnhgtkgtpmtllTNHFEVRMRQTEGYFCHYSvalfyedghpvdgkgigRKILDKVQETYShelegkhfaydgeksLFTLGSFQRKKLEFTIVVEDLssnrtarndspggdgspgegdrkrmrrpsrsKVIRVEISYAAKIPMQAIANALRGQETEHFQEAMRVLDIILRQNAANQGCLLVRQsffhnnprnfadlgggvmgcrgfhssfratqsglslnmdvsttmivkpgpvVNFLLanqnvrephqiDWNKAKRVLKNLRIntnhsnteykitglsdlpcnqqtfslkqksghngdsdaIEITVYEYFVNNRhikleysadfpcinvgkpkrasyiplelCTLVSLQRYTKALSNQQRASLVEKSRQKPQERMGVLTEAMRRNNYGADQMLRSFGIsigtqftqvegrtlpapklkvgngedffprggrwnfnnkqlvepmQIKWWAIVNFSARCDIRSLCNNLircgemkgmhinnphevfeesnqfrreAAPIRVERMFEIIKkklpgppqlllcilperknsdiygpwkrknlseagivtqciaptkvndQYITNVLLKINAKLGGMNSLLTLehsrsiplvskpvtmilgmdvshgspgrsdlpsIAAVVssrqwpsisryrasvrtqspkVEMIANlfkpgsetedyGIIRELFVDFystsgkrkpeniIIFRLNTLSCTFLQIEASkfldekwspkFTVIVAQKNhhtkffqsgrpenvppgtvvdkgvchprnndfylcahagmigtsrpthyhvlhdeigfsaDDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIkfdemsdtssshnamtsagsipvpelpvlhervcnsmffc
MGSPSHKGSEYLPPPPPIIPPNVVPLQSGKVAapapkrlpmarrnhgtkgtpmtllTNHFEVRMRQTEGYFCHYSVALFYEDGHPVDGKGIGRKILDKVQETYSHELEGKHFAYDGEKSLFTLGSFQRKKLEFTIVVEdlssnrtarndspggdgspgegdrkrmrrpsrskvIRVEISYAAKIPMQAIANALRGQETEHFQEAMRVLDIILRQNAANQGCLLVRQSFFHNNPRNFADLGGGVMGCRGFHSSFRATQSGLSLNMDVSTTMIVKPGPVVNFLLANQnvrephqidwNKAKRVLKNLrintnhsnteykitglsdLPCNQQTFSLkqksghngdSDAIEITVYEYFVNNRHIKLEYSADFPCINVGKPKRASYIPLELCTLVSLQRYTKALSNqqraslveksrqkpqermgVLTEAMRRNNYGADQMLRSFGISIGTQFTQVEGRTLPAPKLKVGNGEDFFPRGGRWNFNNKQLVEPMQIKWWAIVNFSARCDIRSLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIkkklpgppqLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPTKVNDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGRSDLPSIAAVvssrqwpsisryrasvrtqspkveMIANLfkpgsetedyGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCTFLQIEASKFLDEKWSPKFTVIVAQKNHHtkffqsgrpenvpPGTVVDKGVCHPRNNDFYLCAHAGMIGTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIKFDEMSDTSSSHNAMTSAgsipvpelpvLHERVCNSMFFC
MGSPSHKGSEYLpppppiippNVVPLQSGKVAAPAPKRLPMARRNHGTKGTPMTLLTNHFEVRMRQTEGYFCHYSVALFYEDGHPVDGKGIGRKILDKVQETYSHELEGKHFAYDGEKSLFTLGSFQRKKLEFTIVVEDLSSNRTARNdspggdgspgegdRKRMRRPSRSKVIRVEISYAAKIPMQAIANALRGQETEHFQEAMRVLDIILRQNAANQGCLLVRQSFFHNNPRNFADLGGGVMGCRGFHSSFRATQSGLSLNMDVSTTMIVKPGPVVNFLLANQNVREPHQIDWNKAKRVLKNLRINTNHSNTEYKITGLSDLPCNQQTFSLKQKSGHNGDSDAIEITVYEYFVNNRHIKLEYSADFPCINVGKPKRASYIPLELCTLVSLQRYTKALSNQQRASLVEKSRQKPQERMGVLTEAMRRNNYGADQMLRSFGISIGTQFTQVEGRTLPAPKLKVGNGEDFFPRGGRWNFNNKQLVEPMQIKWWAIVNFSARCDIRSLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIkkklpgppqlllCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPTKVNDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGRSDLPSIAAVVSSRQWPSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCTFLQIEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGRPENVPPGTVVDKGVCHPRNNDFYLCAHAGMIGTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIKFDEMSDTSSSHNAMTSAGSIPVPELPVLHERVCNSMFFC
****************************************************MTLLTNHFEVRMRQTEGYFCHYSVALFYEDGHPVDGKGIGRKILDKVQETYSHELEGKHFAYDGEKSLFTLGSFQRKKLEFTIVVE**********************************VIRVEISYAAKIPMQAIANALRGQETEHFQEAMRVLDIILRQNAANQGCLLVRQSFFHNNPRNFADLGGGVMGCRGFHSSFRATQSGLSLNMDVSTTMIVKPGPVVNFLLANQNVREPHQIDWNKAKRVLKNLRINTNHSNTEYKITGLSDLPCNQ***************DAIEITVYEYFVNNRHIKLEYSADFPCINVGKPKRASYIPLELCTLVSLQRYTKA********************************YGADQMLRSFGISIGTQFTQVEGRTLPAPKLKVGNGEDFFPRGGRWNFNNKQLVEPMQIKWWAIVNFSARCDIRSLCNNLIRCGEMKGMHINNPHEVFE***QFRREAAPIRVERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPTKVNDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMD***************************************VEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCTFLQIEASKFLDEKWSPKFTVIVAQKNHHTKFFQS*****VPPGTVVDKGVCHPRNNDFYLCAHAGMIGTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIKF************************PVLHERVCNS****
*************************************************GTPMTLLTNHFEVRMRQTEGYFCHYSVALFYED*****GKGIGRKILDKVQETYSHELEGKHFAYDGEKSLFTLGSFQRKKLEFTIVVEDLSSNRTARND******************PSRSKVIRVEISYAAKIPMQAIANALRGQETEHFQEAMRVLDIILRQNAANQGCLLVRQS*F********DLGGGVMGCRGFHSSFRATQSGLSLNMDVSTTMIVKPGPVVNFLLANQNVREPHQIDWNKAKRVLKNLRINTNHSNTEYKITGLSDLPCNQQ*************SDAIEITVYEYFVNNRHIKLEYSADFPCINVGKP****YIPLELCTLVSLQRYTKALSNQQRASLVEKSRQKPQERMGVLTEAMRR*NYGADQMLRSFGISIGTQFTQVEGRTLPAPKLKVGNGEDFFPRGGRWNFNNKQLVEPMQIKWWAIVNFSARCDIRSLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPTKVNDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGRSDLPSIAAVVSSRQWPSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCTFLQIEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGRPENVPPGTVVDKGVCHPRNNDFYLCAHAGMIGTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQ*****************************VLHERVCNSMFFC
**********YLPPPPPIIPPNVVPLQSGKVAAPAPKRLPMARRNHGTKGTPMTLLTNHFEVRMRQTEGYFCHYSVALFYEDGHPVDGKGIGRKILDKVQETYSHELEGKHFAYDGEKSLFTLGSFQRKKLEFTIVVEDLSSNR**************************SKVIRVEISYAAKIPMQAIANALRGQETEHFQEAMRVLDIILRQNAANQGCLLVRQSFFHNNPRNFADLGGGVMGCRGFHSSFRATQSGLSLNMDVSTTMIVKPGPVVNFLLANQNVREPHQIDWNKAKRVLKNLRINTNHSNTEYKITGLSDLPCNQQTFSL********DSDAIEITVYEYFVNNRHIKLEYSADFPCINVGKPKRASYIPLELCTLVSLQRYTKA********************MGVLTEAMRRNNYGADQMLRSFGISIGTQFTQVEGRTLPAPKLKVGNGEDFFPRGGRWNFNNKQLVEPMQIKWWAIVNFSARCDIRSLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPTKVNDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGRSDLPSIAAVVSSRQWPSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCTFLQIEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGRPENVPPGTVVDKGVCHPRNNDFYLCAHAGMIGTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIKFD**************AGSIPVPELPVLHERVCNSMFFC
**************************************LPM**R***TKGTPMTLLTNHFEVRMRQTEGYFCHYSVALFYEDGHPVDGKGIGRKILDKVQETYSHELEGKHFAYDGEKSLFTLGSFQRKKLEFTIVVEDL*****************************RSKVIRVEISYAAKIPMQAIANALRGQETEHFQEAMRVLDIILRQNAANQGCLLVRQSFFHNNPRNFADLGGGVMGCRGFHSSFRATQSGLSLNMDVSTTMIVKPGPVVNFLLANQNVREPHQIDWNKAKRVLKNLRINTNHSNTEYKITGLSDLPCNQQTFSLKQKSGHNGDSDAIEITVYEYFVNNRHIKLEYSADFPCINVGKPKRASYIPLELCTLVSLQRYTKALSNQQRASLVEKSRQKPQERMGVLTEAMRRNNYGADQMLRSFGISIGTQFTQVEGRTLPAPKLKVGNGEDFFPRGGRWNFNNKQLVEPMQIKWWAIVNFSARCDIRSLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPTKVNDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGS*GRSDLPSIAAVVSSRQWPSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCTFLQIEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGRPENVPPGTVVDKGVCHPRNNDFYLCAHAGMIGTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIKF********************VPELPVLHERVCNSMFFC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSPSHKGSEYLPPPPPIIPPNVVPLQSGKVAAPAPKRLPMARRNHGTKGTPMTLLTNHFEVRMRQTEGYFCHYSVALFYEDGHPVDGKGIGRKILDKVQETYSHELEGKHFAYDGEKSLFTLGSFQRKKLEFTIVVEDLSSNRTARNDSPGGDGSPGEGDRKRMRRPSRSKVIRVEISYAAKIPMQAIANALRGQETEHFQEAMRVLDIILRQNAANQGCLLVRQSFFHNNPRNFADLGGGVMGCRGFHSSFRATQSGLSLNMDVSTTMIVKPGPVVNFLLANQNVREPHQIDWNKAKRVLKNLRINTNHSNTEYKITGLSDLPCNQQTFSLKQKSGHNGDSDAIEITVYEYFVNNRHIKLEYSADFPCINVGKPKRASYIPLELCTLVSLQRYTKALSNQQRASLVEKSRQKPQERMGVLTEAMRRNNYGADQMLRSFGISIGTQFTQVEGRTLPAPKLKVGNGEDFFPRGGRWNFNNKQLVEPMQIKWWAIVNFSARCDIRSLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPTKVNDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGRSDLPSIAAVVSSRQWPSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCTFLQIEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGRPENVPPGTVVDKGVCHPRNNDFYLCAHAGMIGTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIKFDEMSDTSSSHNAMTSAGSIPVPELPVLHERVCNSMFFC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query898 2.2.26 [Sep-21-2011]
Q0JF58911 Protein argonaute 4B OS=O yes no 0.959 0.946 0.684 0.0
Q9SDG8904 Protein argonaute 4A OS=O no no 0.958 0.952 0.684 0.0
Q9ZVD5924 Protein argonaute 4 OS=Ar yes no 0.961 0.933 0.651 0.0
Q84VQ0896 Protein argonaute 9 OS=Ar no no 0.964 0.966 0.626 0.0
Q6YSJ5883 Protein argonaute 16 OS=O no no 0.953 0.969 0.603 0.0
Q5NBN9889 Protein argonaute 15 OS=O no no 0.955 0.965 0.580 0.0
Q3E984850 Protein argonaute 8 OS=Ar no no 0.915 0.967 0.566 0.0
O48771878 Protein argonaute 6 OS=Ar no no 0.933 0.954 0.549 0.0
Q7XSA21118 Protein argonaute 1B OS=O no no 0.923 0.741 0.350 1e-135
Q851R21058 Protein argonaute MEL1 OS no no 0.919 0.780 0.343 1e-134
>sp|Q0JF58|AGO4B_ORYSJ Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1 Back     alignment and function desciption
 Score = 1264 bits (3270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/872 (68%), Positives = 707/872 (81%), Gaps = 10/872 (1%)

Query: 36  PKRLPMARRNHGTKGTPMTLLTNHFEVRMRQTEGYFCHYSVALFYEDGHPVDGKGIGRKI 95
           PKR PMAR   G KG P+ LL NH++V ++ +E YF HY+V L YED  PVDGKG+GRK+
Sbjct: 41  PKRFPMARPGLGRKGQPIQLLANHYKVSVKSSEEYFFHYNVILKYEDDRPVDGKGVGRKV 100

Query: 96  LDKVQETYSHELEGKHFAYDGEKSLFTLGSFQRKKLEFTIVVEDLSSNRTARNDSPGGDG 155
           +DK+Q+TY  EL  K FAYDGEKSLFT+G+  +   EFT+V+ED+S+ +TA N SPGG+ 
Sbjct: 101 IDKLQQTYRSELSSKDFAYDGEKSLFTIGALPQVTNEFTVVLEDVSTGKTAANGSPGGND 160

Query: 156 SPGEGDRKRMRRPSRSKVIRVEISYAAKIPMQAIANALRGQETEHFQEAMRVLDIILRQN 215
           SPG  DRKR+RRP ++K  +VE+ +AAKIPM AIA A++GQE+E+ QEA+RVLDIILRQ+
Sbjct: 161 SPGGSDRKRVRRPYQTKTFKVELCFAAKIPMNAIAQAIKGQESENSQEALRVLDIILRQH 220

Query: 216 AANQGCLLVRQSFFHNNPRNFADLGGGVMGCRGFHSSFRATQSGLSLNMDVSTTMIVKPG 275
           +A QGCLLVRQSFFHNNP NF DLGGGVMGCRGFHSSFR TQSGLSLN+DVSTTMIVKPG
Sbjct: 221 SAKQGCLLVRQSFFHNNPNNFVDLGGGVMGCRGFHSSFRGTQSGLSLNIDVSTTMIVKPG 280

Query: 276 PVVNFLLANQNVREPHQIDWNKAKRVLKNLRINTNHSNTEYKITGLSDLPCNQQTFSLKQ 335
           PV++FLLANQ V  P +IDW KAKR LKNLRI T   N+E+KI GLSD  CN+Q FSL+Q
Sbjct: 281 PVIDFLLANQKVDHPDRIDWQKAKRALKNLRIRTTPVNSEFKIIGLSDRNCNEQMFSLRQ 340

Query: 336 KSGHNGDSDAIEITVYEYFVNNRHIKLEYSADFPCINVGKPKRASYIPLELCTLVSLQRY 395
           ++G+NGD D +E+TVY+YFV N+ I+L YS + PCINVGKPKR +Y P+ELC+L+ LQRY
Sbjct: 341 RNGNNGDVDEVEVTVYDYFVKNKGIELRYSGNLPCINVGKPKRPTYFPIELCSLIPLQRY 400

Query: 396 TKALSNQQRASLVEKSRQKPQERMGVLTEAMRRNNYGADQMLRSFGISIGTQFTQVEGRT 455
           TKALS  QR+SLVEKSRQKPQERM VL +A+R +NY +D MLR+ GISI   FTQVEGR 
Sbjct: 401 TKALSTLQRSSLVEKSRQKPQERMSVLNDALRHSNYDSDPMLRASGISIAQNFTQVEGRV 460

Query: 456 LPAPKLKVGNGEDFFPRGGRWNFNNKQLVEPMQIKWWAIVNFSARCDIRSLCNNLIRCGE 515
           L  PKLK GNGED FPR GRWNFNNK+L++   +  WA+VNFSARCD+R+L  +LIR   
Sbjct: 461 LQPPKLKAGNGEDIFPRNGRWNFNNKKLIQTCSVDKWAVVNFSARCDVRNLIRDLIRNAS 520

Query: 516 MKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKKLPGPPQLLLCILPERKNSDIYG 575
            KG+ +  P +VFEES   RR     RV+ MFE IK KLPG P+ LLC+LPERKN ++YG
Sbjct: 521 AKGIQMAEPFDVFEESPSLRRAPVSRRVDDMFEQIKSKLPGAPKFLLCLLPERKNCEVYG 580

Query: 576 PWKRKNLSEAGIVTQCIAPTKVNDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPV 635
           PWKRK L+E GIVTQC+AP +VNDQY+ N+LLKINAKLGG+NSLL +E S SIPLVSK  
Sbjct: 581 PWKRKCLAEFGIVTQCLAPQRVNDQYLLNLLLKINAKLGGINSLLQIEASPSIPLVSKTP 640

Query: 636 TMILGMDVSHGSPGRSDLPSIAAVVSSRQWPSISRYRASVRTQSPKVEMIANLFKPGSET 695
           T+ILGMDVSHG PG+SD PSIAAVVSSRQWP IS+YRASV TQSPK+EM+++LFKP   T
Sbjct: 641 TIILGMDVSHGQPGQSDRPSIAAVVSSRQWPLISKYRASVHTQSPKLEMMSSLFKPRG-T 699

Query: 696 EDYGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCTFLQ---------IEASKFLDEKWS 746
           ED G+IRE  +DFY++SGKRKP+++I+FR       F Q         IEA KFLDEKWS
Sbjct: 700 EDDGLIRESLIDFYTSSGKRKPDHVIVFRDGVSESQFTQVINIELDQIIEACKFLDEKWS 759

Query: 747 PKFTVIVAQKNHHTKFFQSGRPENVPPGTVVDKGVCHPRNNDFYLCAHAGMIGTSRPTHY 806
           PKFTVIVAQKNHHTKFFQSG P+NVPPGTVVDK VCHPRN DFY+CAHAGMIGT+RPTHY
Sbjct: 760 PKFTVIVAQKNHHTKFFQSGSPDNVPPGTVVDKQVCHPRNYDFYMCAHAGMIGTTRPTHY 819

Query: 807 HVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIKFDEMSDT 866
           HVLHDEIGFS DDLQELVHSLSYVYQRSTTA+SVV PICYAHLAAAQ+  F+KF++MSD 
Sbjct: 820 HVLHDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGTFLKFEDMSDA 879

Query: 867 SSSHNAMTSAGSIPVPELPVLHERVCNSMFFC 898
           SSS    TS GS+PVPELP LHE+V +SMFFC
Sbjct: 880 SSSQGGHTSVGSVPVPELPRLHEKVRSSMFFC 911
Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9SDG8|AGO4A_ORYSJ Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1 Back     alignment and function description
>sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4 OS=Arabidopsis thaliana GN=AGO4 PE=1 SV=2 Back     alignment and function description
>sp|Q84VQ0|AGO9_ARATH Protein argonaute 9 OS=Arabidopsis thaliana GN=AGO9 PE=1 SV=2 Back     alignment and function description
>sp|Q6YSJ5|AGO16_ORYSJ Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2 Back     alignment and function description
>sp|Q5NBN9|AGO15_ORYSJ Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2 Back     alignment and function description
>sp|Q3E984|AGO8_ARATH Protein argonaute 8 OS=Arabidopsis thaliana GN=AGO8 PE=3 SV=1 Back     alignment and function description
>sp|O48771|AGO6_ARATH Protein argonaute 6 OS=Arabidopsis thaliana GN=AGO6 PE=2 SV=2 Back     alignment and function description
>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 Back     alignment and function description
>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query898
224097488923 argonaute protein group [Populus trichoc 0.964 0.938 0.75 0.0
225436053913 PREDICTED: protein argonaute 4 [Vitis vi 0.957 0.941 0.728 0.0
449463869915 PREDICTED: protein argonaute 4-like [Cuc 0.956 0.938 0.717 0.0
449516890915 PREDICTED: LOW QUALITY PROTEIN: protein 0.956 0.938 0.717 0.0
255573685921 eukaryotic translation initiation factor 0.956 0.932 0.706 0.0
268376309933 argonaute 4-like protein [Pelargonium x 0.954 0.918 0.721 0.0
84688912905 AGO4-2, partial [Nicotiana benthamiana] 0.962 0.954 0.705 0.0
409127957909 AGO4A [Solanum lycopersicum] 0.957 0.946 0.700 0.0
357493611908 Protein argonaute 4 [Medicago truncatula 0.994 0.983 0.682 0.0
357493613948 Protein argonaute 4 [Medicago truncatula 0.994 0.941 0.682 0.0
>gi|224097488|ref|XP_002310956.1| argonaute protein group [Populus trichocarpa] gi|222850776|gb|EEE88323.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1391 bits (3601), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/888 (75%), Positives = 751/888 (84%), Gaps = 22/888 (2%)

Query: 33  APAPKRLPMARRNHGTKGTPMTLLTNHFEVRMRQTEGYFCHYSVALFYEDGHPVDGKGIG 92
           A  PKR+PMARR +G KG  + LLTNHF+V + ++  +F  YSVALFYEDGHP DGKGIG
Sbjct: 36  AATPKRVPMARRGYGAKGQRIQLLTNHFKVAVPKSNDHFYQYSVALFYEDGHPTDGKGIG 95

Query: 93  RKILDKVQETYSHELEGKHFAYDGEKSLFTLGSFQRKKLEFTIVVEDLSSNRTARNDSPG 152
           RK++DKVQETY  ELEGK  AYDGEK+LFT GS    KLEFT+V+ED+S  R   NDS  
Sbjct: 96  RKVMDKVQETYDSELEGKQLAYDGEKTLFTTGSLPHNKLEFTVVLEDVSLTRGGDNDSSR 155

Query: 153 GDGSPGEGDRKRMRRPSRSKVIRVEISYAAKIPMQAIANALRGQETEHFQEAMRVLDIIL 212
           G+GSP E D+KR +RP  SK I+V+ISYA KIP+QAIA  L+GQE+EHFQEA+RVLDI+L
Sbjct: 156 GNGSPSESDQKRRKRPYHSKTIKVQISYATKIPVQAIAAVLQGQESEHFQEAVRVLDIVL 215

Query: 213 RQNAANQGCLLVRQSFFHNNPRNFADLGGGVMGCRGFHSSFRATQSGLSLNMDVSTTMIV 272
           RQNAA QGCLLVRQSFFHNNPRNF +LGGGVMGCRGFHSSFRA Q GLSLN+DVSTTMIV
Sbjct: 216 RQNAARQGCLLVRQSFFHNNPRNFVELGGGVMGCRGFHSSFRAAQDGLSLNIDVSTTMIV 275

Query: 273 KPGPVVNFLLANQNVREPHQIDWNKAKRVLKNLRINTNHSNTEYKITGLSDLPCNQQTFS 332
           KPGPVV+FL+ NQNVR+P+ IDW KAKR+LKNLRI TNHSNTEYKITGL++  C +QTFS
Sbjct: 276 KPGPVVDFLIMNQNVRDPYHIDWTKAKRMLKNLRIKTNHSNTEYKITGLTEKSCREQTFS 335

Query: 333 LKQKSGHNGDSDA--IEITVYEYFVNNRHIKLEYSADFPCINVGKPKRASYIPLELCTLV 390
           L Q+SG +GD +   IE+TVY+YFVN+R++ L+YSADFPCINVGKPKR SY PLELC LV
Sbjct: 336 LNQRSGRDGDGEVQTIEVTVYDYFVNHRNMGLQYSADFPCINVGKPKRPSYFPLELCNLV 395

Query: 391 SLQRYTKALSNQQRASLVEKSRQKPQERMGVLTEAMRRNNYGADQMLRSFGISIGTQFTQ 450
           SLQRYTKALS+ QRASLVEKSRQKPQERM  LT+A+R +NY AD MLRS GISI  QFTQ
Sbjct: 396 SLQRYTKALSSLQRASLVEKSRQKPQERMRSLTDALRSSNYDADPMLRSSGISISAQFTQ 455

Query: 451 VEGRTLPAPKLKVGNGEDFFPRGGRWNFNNKQLVEPMQIKWWAIVNFSARCDIRSLCNNL 510
           VEGR L AP+LKVGNGEDFFPR GRWNFNNK+LV+P++I+ WAIVNFSARCDIR LCNNL
Sbjct: 456 VEGRVLSAPRLKVGNGEDFFPRNGRWNFNNKKLVDPVKIEKWAIVNFSARCDIRYLCNNL 515

Query: 511 IRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKKLPGPPQLLLCILPERKN 570
           I+CG+MKG+ I+NP EVFEES QFRRE+AP+RVERMFE IK KLPGPPQ LLCILPERKN
Sbjct: 516 IKCGDMKGISISNPFEVFEESPQFRRESAPVRVERMFEAIKSKLPGPPQFLLCILPERKN 575

Query: 571 SDIYGPWKRKNLSEAGIVTQCIAPTKVNDQYITNVLLKINAK----------LGGMNSLL 620
           SDIYGPWKRKNLS+ GIVTQCIAPTKVNDQY+TNVLLKINAK          LGGMNSLL
Sbjct: 576 SDIYGPWKRKNLSDLGIVTQCIAPTKVNDQYLTNVLLKINAKVEFCNVIPFELGGMNSLL 635

Query: 621 TLEHSRSIPLVSKPVTMILGMDVSHGSPGRSDLPSIAAVVSSRQWPSISRYRASVRTQSP 680
           ++EH+ SIPLVSK  T+ILGMDVSHGSPG SD+PSIAAVVSSR WP ISRYRASVRTQS 
Sbjct: 636 SIEHAPSIPLVSKLPTLILGMDVSHGSPGHSDVPSIAAVVSSRHWPLISRYRASVRTQSQ 695

Query: 681 KVEMIANLFKPGSET-EDYGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCTFLQ----- 734
           KVEMIANLFKP + T ED GIIRE  +DFYS+SGKRKP+ IIIFR       F+Q     
Sbjct: 696 KVEMIANLFKPVAGTREDQGIIRESLLDFYSSSGKRKPDQIIIFRDGVSESQFIQVLNIE 755

Query: 735 ----IEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGRPENVPPGTVVDKGVCHPRNNDFY 790
               IEA KFLDE W PKF VIVAQKNHHTKFFQSG P+NVPPGTV+D  VCHPRNNDFY
Sbjct: 756 LEQIIEACKFLDENWCPKFMVIVAQKNHHTKFFQSGSPDNVPPGTVIDNKVCHPRNNDFY 815

Query: 791 LCAHAGMIGTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLA 850
           +CAHAGMIGT+RPTHYHVLHDE+GFSADDLQELVHSLSYVYQRSTTA+SVV PICYAHLA
Sbjct: 816 MCAHAGMIGTTRPTHYHVLHDELGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLA 875

Query: 851 AAQMSQFIKFDEMSDTSSSHNAMTSAGSIPVPELPVLHERVCNSMFFC 898
           A+QM+QFIKFD++SDTSSSH  +T  G++PVPELP LH  V +SMFFC
Sbjct: 876 ASQMTQFIKFDDLSDTSSSHGGVTVPGAVPVPELPRLHNNVSSSMFFC 923

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225436053|ref|XP_002275928.1| PREDICTED: protein argonaute 4 [Vitis vinifera] gi|296083994|emb|CBI24382.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449463869|ref|XP_004149653.1| PREDICTED: protein argonaute 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516890|ref|XP_004165479.1| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255573685|ref|XP_002527764.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223532851|gb|EEF34625.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|268376309|gb|ACZ04920.1| argonaute 4-like protein [Pelargonium x hortorum] Back     alignment and taxonomy information
>gi|84688912|gb|ABC61505.1| AGO4-2, partial [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|409127957|gb|AFV15381.1| AGO4A [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|357493611|ref|XP_003617094.1| Protein argonaute 4 [Medicago truncatula] gi|355518429|gb|AET00053.1| Protein argonaute 4 [Medicago truncatula] Back     alignment and taxonomy information
>gi|357493613|ref|XP_003617095.1| Protein argonaute 4 [Medicago truncatula] gi|355518430|gb|AET00054.1| Protein argonaute 4 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query898
TAIR|locus:2059258924 AGO4 "ARGONAUTE 4" [Arabidopsi 0.975 0.948 0.629 4.2e-308
TAIR|locus:2179008896 AGO9 "ARGONAUTE 9" [Arabidopsi 0.964 0.966 0.615 3.2e-294
TAIR|locus:2059370878 AGO6 "ARGONAUTE 6" [Arabidopsi 0.930 0.952 0.543 1.6e-237
TAIR|locus:2147072850 AT5G21030 [Arabidopsis thalian 0.760 0.803 0.537 1.7e-194
TAIR|locus:2170897988 AGO10 "ARGONAUTE 10" [Arabidop 0.720 0.654 0.317 6.4e-130
UNIPROTKB|Q851R21058 MEL1 "Protein argonaute MEL1" 0.609 0.517 0.338 2.4e-126
TAIR|locus:2057851997 AGO5 "ARGONAUTE 5" [Arabidopsi 0.640 0.576 0.333 1.2e-124
TAIR|locus:2007111990 AGO7 "ARGONAUTE7" [Arabidopsis 0.850 0.771 0.305 6.7e-100
UNIPROTKB|F1MXK6850 EIF2C4 "Uncharacterized protei 0.777 0.821 0.310 3.4e-94
UNIPROTKB|F1MXX2877 EIF2C1 "Uncharacterized protei 0.777 0.795 0.316 5.4e-94
TAIR|locus:2059258 AGO4 "ARGONAUTE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2956 (1045.6 bits), Expect = 4.2e-308, P = 4.2e-308
 Identities = 560/890 (62%), Positives = 697/890 (78%)

Query:    22 NVVPLQSGKVAAP--APKRLPMARRNHGTKGTPMTLLTNHFEVRMRQTEGYFCHYSVALF 79
             NV P++     A    P R+PMAR+  GT+G  + LLTNHF+V +   +G+F HYSVALF
Sbjct:    36 NVEPVRVKTELAEKKGPVRVPMARKGFGTRGQKIPLLTNHFKVDVANLQGHFFHYSVALF 95

Query:    80 YEDGHPVDGKGIGRKILDKVQETYSHELEGKHFAYDGEKSLFTLGSFQRKKLEFTIVVED 139
             Y+DG PV+ KG+GRKILDKV +TY  +L+GK FAYDGEK+LFT G+    K++F++V+E+
Sbjct:    96 YDDGRPVEQKGVGRKILDKVHQTYHSDLDGKEFAYDGEKTLFTYGALPSNKMDFSVVLEE 155

Query:   140 LSSNRTARNXXXXXXXXXXXXXRKRMRRPSRSKVIRVEISYAAKIPMQAIANALRGQETE 199
             +S+ R   N             RKR+RRP+RSK  RVEISYAAKIP+QA+ANA+RGQE+E
Sbjct:   156 VSATRANGNGSPNGNESPSDGDRKRLRRPNRSKNFRVEISYAAKIPLQALANAMRGQESE 215

Query:   200 HFQEAMRVLDIILRQNAANQGCLLVRQSFFHNNPRNFADLGGGVMGCRGFHSSFRATQSG 259
             + QEA+RVLDIILRQ+AA QGCLLVRQSFFHN+P N   +GG ++GCRGFHSSFR TQ G
Sbjct:   216 NSQEAIRVLDIILRQHAARQGCLLVRQSFFHNDPTNCEPVGGNILGCRGFHSSFRTTQGG 275

Query:   260 LSLNMDVSTTMIVKPGPVVNFLLANQNVREPHQIDWNKAKRVLKNLRINTNHSNTEYKIT 319
             +SLNMDV+TTMI+KPGPVV+FL+ANQN R+P+ IDW+KAKR LKNLR+  + S  E+KIT
Sbjct:   276 MSLNMDVTTTMIIKPGPVVDFLIANQNARDPYSIDWSKAKRTLKNLRVKVSPSGQEFKIT 335

Query:   320 GLSDLPCNQQTFSLKQKS-GHNGDSDAIEITVYEYFVNNRHIKLEYSADFPCINVGKPKR 378
             GLSD PC +QTF LK+++   NG+ +  E+TV +YF + RHI L+YSAD PCINVGKPKR
Sbjct:   336 GLSDKPCREQTFELKKRNPNENGEFETTEVTVADYFRDTRHIDLQYSADLPCINVGKPKR 395

Query:   379 ASYIPLELCTLVSLQRYTKALSNQQRASLVEKSRQKPQERMGVLTEAMRRNNYGADQMLR 438
              +YIPLELC LV LQRYTKAL+  QR++LVEKSRQKPQERM VL++A++ +NY A+ +LR
Sbjct:   396 PTYIPLELCALVPLQRYTKALTTFQRSALVEKSRQKPQERMTVLSKALKVSNYDAEPLLR 455

Query:   439 SFGISIGTQFTQVEGRTLPAPKLKVGNGEDFFPRGGRWNFNNKQLVEPMQIKWWAIVNFS 498
             S GISI + FTQVEGR LPAPKLK+G G + FPR GRWNFNNK+ VEP +I+ W +VNFS
Sbjct:   456 SCGISISSNFTQVEGRVLPAPKLKMGCGSETFPRNGRWNFNNKEFVEPTKIQRWVVVNFS 515

Query:   499 ARCDIRSLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIXXXXXXXX 558
             ARC++R + ++LI+ G  KG+ I +P +VFEE NQFRR    IRVE MF+ I        
Sbjct:   516 ARCNVRQVVDDLIKIGGSKGIEIASPFQVFEEGNQFRRAPPMIRVENMFKDIQSKLPGVP 575

Query:   559 XXXXCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPTKV-NDQYITNVLLKINAKLGGMN 617
                 C+LP++KNSD+YGPWK+KNL+E GIVTQC+APT+  NDQY+TN+LLKINAKLGG+N
Sbjct:   576 QFILCVLPDKKNSDLYGPWKKKNLTEFGIVTQCMAPTRQPNDQYLTNLLLKINAKLGGLN 635

Query:   618 SLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGRSDLPSIAAVVSSRQWPSISRYRASVRT 677
             S+L++E + +  ++SK  T+ILGMDVSHGSPG+SD+PSIAAVVSSR+WP IS+YRASVRT
Sbjct:   636 SMLSVERTPAFTVISKVPTIILGMDVSHGSPGQSDVPSIAAVVSSREWPLISKYRASVRT 695

Query:   678 QSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCTFLQ--- 734
             Q  K EMI +L K    TED GII+EL VDFY++S KRKPE+IIIFR       F Q   
Sbjct:   696 QPSKAEMIESLVKKNG-TEDDGIIKELLVDFYTSSNKRKPEHIIIFRDGVSESQFNQVLN 754

Query:   735 ------IEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGRPENVPPGTVVDKGVCHPRNND 788
                   IEA K LD  W+PKF ++VAQKNHHTKFFQ   PENVPPGT++D  +CHP+NND
Sbjct:   755 IELDQIIEACKLLDANWNPKFLLLVAQKNHHTKFFQPTSPENVPPGTIIDNKICHPKNND 814

Query:   789 FYLCAHAGMIGTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAH 848
             FYLCAHAGMIGT+RPTHYHVL+DEIGFSAD+LQELVHSLSYVYQRST+A+SVV PICYAH
Sbjct:   815 FYLCAHAGMIGTTRPTHYHVLYDEIGFSADELQELVHSLSYVYQRSTSAISVVAPICYAH 874

Query:   849 LAAAQMSQFIKFDEMSDTSSSHNAMTSAGSIPVPELPVLHERVCNSMFFC 898
             LAAAQ+  F+KF++ S+TSSSH  +T+ G I V +LP L + V NSMFFC
Sbjct:   875 LAAAQLGTFMKFEDQSETSSSHGGITAPGPISVAQLPRLKDNVANSMFFC 924
GO:0005634 "nucleus" evidence=ISM
GO:0006342 "chromatin silencing" evidence=RCA;IMP
GO:0005730 "nucleolus" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005719 "nuclear euchromatin" evidence=IDA
GO:0015030 "Cajal body" evidence=IDA
GO:0051567 "histone H3-K9 methylation" evidence=RCA;IMP
GO:0006306 "DNA methylation" evidence=RCA;IMP
GO:0010495 "long-distance posttranscriptional gene silencing" evidence=IMP
GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP
GO:0031048 "chromatin silencing by small RNA" evidence=RCA;TAS
GO:0030422 "production of siRNA involved in RNA interference" evidence=IGI
GO:0035197 "siRNA binding" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006260 "DNA replication" evidence=RCA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0009555 "pollen development" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0016444 "somatic cell DNA recombination" evidence=RCA
GO:0016458 "gene silencing" evidence=RCA
GO:0016568 "chromatin modification" evidence=RCA
GO:0016569 "covalent chromatin modification" evidence=RCA
GO:0016570 "histone modification" evidence=RCA
GO:0016572 "histone phosphorylation" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
GO:0051225 "spindle assembly" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
TAIR|locus:2179008 AGO9 "ARGONAUTE 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059370 AGO6 "ARGONAUTE 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147072 AT5G21030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007111 AGO7 "ARGONAUTE7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1MXK6 EIF2C4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1MXX2 EIF2C1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O77503AGO2_RABIT3, ., 1, ., 2, 6, ., n, 20.30280.88410.9452yesno
Q9UL18AGO1_HUMANNo assigned EC number0.30570.87410.9159yesno
Q9QZ81AGO2_RAT3, ., 1, ., 2, 6, ., n, 20.30380.89420.9337yesno
Q9ZVD5AGO4_ARATHNo assigned EC number0.65140.96100.9339yesno
Q0JF58AGO4B_ORYSJNo assigned EC number0.68460.95990.9462yesno
Q8CJG0AGO2_MOUSE3, ., 1, ., 2, 6, ., n, 20.30380.89420.9337yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AGO912
argonaute protein group (923 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query898
PLN03202900 PLN03202, PLN03202, protein argonaute; Provisional 0.0
cd04657426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 1e-156
pfam02171296 pfam02171, Piwi, Piwi domain 6e-96
smart00950301 smart00950, Piwi, This domain is found in the prot 7e-95
cd04658448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 7e-64
cd02826393 cd02826, Piwi-like, Piwi-like: PIWI domain 1e-50
cd02846114 cd02846, PAZ_argonaute_like, PAZ domain, argonaute 3e-27
pfam02170114 pfam02170, PAZ, PAZ domain 8e-27
pfam0869952 pfam08699, DUF1785, Domain of unknown function (DU 3e-20
cd04659404 cd04659, Piwi_piwi-like_ProArk, Piwi_piwi-like_Pro 1e-06
smart00949138 smart00949, PAZ, This domain is named PAZ after th 4e-06
cd02825115 cd02825, PAZ, PAZ domain, named PAZ after the prot 2e-05
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information 
 Score = 1713 bits (4438), Expect = 0.0
 Identities = 666/899 (74%), Positives = 771/899 (85%), Gaps = 10/899 (1%)

Query: 10  EYLPPPPPIIPPNVVPLQSGKVAAPA-PKRLPMARRNHGTKGTPMTLLTNHFEVRMRQTE 68
           + LPPPPP++PPNVVP++      P+ PKRLPMARR  G+KG  + LLTNHF+V +   +
Sbjct: 2   DALPPPPPVVPPNVVPIKLEPTKKPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPD 61

Query: 69  GYFCHYSVALFYEDGHPVDGKGIGRKILDKVQETYSHELEGKHFAYDGEKSLFTLGSFQR 128
           G+F HYSV+L YEDG PVDGKGIGRK++DKVQETYS +L GK FAYDGEKSLFT+G+  +
Sbjct: 62  GHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDFAYDGEKSLFTVGALPQ 121

Query: 129 KKLEFTIVVEDLSSNRTARNDSPGGDGSPGEGDRKRMRRPSRSKVIRVEISYAAKIPMQA 188
            KLEFT+V+ED+SSNR   N SP G+GSP  GDRKR RRP +SK  +VEIS+AAKIPMQA
Sbjct: 122 NKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQA 181

Query: 189 IANALRGQETEHFQEAMRVLDIILRQNAANQGCLLVRQSFFHNNPRNFADLGGGVMGCRG 248
           IANALRGQE+E+ Q+A+RVLDIILRQ+AA QGCLLVRQSFFHN+P+NF DLGGGV+GCRG
Sbjct: 182 IANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRG 241

Query: 249 FHSSFRATQSGLSLNMDVSTTMIVKPGPVVNFLLANQNVREPHQIDWNKAKRVLKNLRIN 308
           FHSSFR TQ GLSLN+DVSTTMIV+PGPVV+FL+ANQNVR+P QIDW+KAKR+LKNLR+ 
Sbjct: 242 FHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLRVK 301

Query: 309 TNHSNTEYKITGLSDLPCNQQTFSLKQKSGHNGDSDAIEITVYEYFVNNRHIKLEYSADF 368
            + SN EYKITGLS+ PC +QTFSLKQ++G+  + + +EITVY+YFV +R I+L YS D 
Sbjct: 302 VSPSNQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGDL 361

Query: 369 PCINVGKPKRASYIPLELCTLVSLQRYTKALSNQQRASLVEKSRQKPQERMGVLTEAMRR 428
           PCINVGKPKR +Y P+ELC+LVSLQRYTKALS  QR+SLVEKSRQKPQERM VLT+A++ 
Sbjct: 362 PCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKS 421

Query: 429 NNYGADQMLRSFGISIGTQFTQVEGRTLPAPKLKVGNGEDFFPRGGRWNFNNKQLVEPMQ 488
           +NY AD MLRS GISI +QFTQVEGR LPAPKLKVGNGEDFFPR GRWNFNNK+LVEP +
Sbjct: 422 SNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLVEPTK 481

Query: 489 IKWWAIVNFSARCDIRSLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFE 548
           I+ WA+VNFSARCDIR L  +LI+CGEMKG++I  P +VFEE+ QFRR   P+RVE+MFE
Sbjct: 482 IERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFE 541

Query: 549 IIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPTKVNDQYITNVLLK 608
            I+ KLPGPPQ LLCILPERKNSDIYGPWK+KNLSE GIVTQCIAPT+VNDQY+TNVLLK
Sbjct: 542 QIQSKLPGPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTNVLLK 601

Query: 609 INAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGRSDLPSIAAVVSSRQWPSI 668
           INAKLGG+NSLL +EHS SIPLVSK  T+ILGMDVSHGSPG+SD+PSIAAVVSSRQWP I
Sbjct: 602 INAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLI 661

Query: 669 SRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNTL 728
           SRYRASVRTQSPKVEMI +LFKP  + +D GIIREL +DFY++SGKRKPE IIIFR    
Sbjct: 662 SRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVS 721

Query: 729 SCTFLQ---------IEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGRPENVPPGTVVDK 779
              F Q         IEA KFLDE WSPKFTVIVAQKNHHTKFFQ+G P+NVPPGTVVD 
Sbjct: 722 ESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAGSPDNVPPGTVVDN 781

Query: 780 GVCHPRNNDFYLCAHAGMIGTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVS 839
            +CHPRNNDFY+CAHAGMIGT+RPTHYHVL DEIGFSADDLQELVHSLSYVYQRSTTA+S
Sbjct: 782 KICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAIS 841

Query: 840 VVTPICYAHLAAAQMSQFIKFDEMSDTSSSHNAMTSAGSIPVPELPVLHERVCNSMFFC 898
           VV P+CYAHLAAAQM QF+KF++MS+TSSSH  +TSAG++PVPELP LHE V +SMFFC
Sbjct: 842 VVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGGITSAGAVPVPELPRLHENVASSMFFC 900

Length = 900
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily Back     alignment and domain information
>gnl|CDD|216914 pfam02170, PAZ, PAZ domain Back     alignment and domain information
>gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) Back     alignment and domain information
>gnl|CDD|240017 cd04659, Piwi_piwi-like_ProArk, Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 898
PLN03202900 protein argonaute; Provisional 100.0
KOG1041876 consensus Translation initiation factor 2C (eIF-2C 100.0
KOG1042845 consensus Germ-line stem cell division protein Hiw 100.0
cd04657426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
cd04658448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd02826393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
PF02171302 Piwi: Piwi domain; InterPro: IPR003165 This domain 100.0
cd04659404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 100.0
PF02170135 PAZ: PAZ domain; InterPro: IPR003100 This domain i 99.87
cd02825115 PAZ PAZ domain, named PAZ after the proteins Piwi 99.76
cd02846114 PAZ_argonaute_like PAZ domain, argonaute_like subf 99.76
cd02845117 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In 99.75
cd02844135 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( 99.43
PF0869952 DUF1785: Domain of unknown function (DUF1785); Int 99.42
COG1431685 Argonaute homolog, implicated in RNA metabolism [T 99.18
cd02843122 PAZ_dicer_like PAZ domain, dicer_like subfamily. D 98.67
PF13032138 DUF3893: Domain of unknown function (DUF3893) 92.01
PF08459155 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; I 88.2
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.2e-177  Score=1605.35  Aligned_cols=886  Identities=75%  Similarity=1.229  Sum_probs=771.5

Q ss_pred             CCCCCCCCCCCCCcccCCCCCCCCCCCc-cCcCCCCCCCCCCeEEEEeeEEEEEeecCCceEEEEEEEeecCCCCCCCCc
Q 002636           11 YLPPPPPIIPPNVVPLQSGKVAAPAPKR-LPMARRNHGTKGTPMTLLTNHFEVRMRQTEGYFCHYSVALFYEDGHPVDGK   89 (898)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~RP~~Gt~G~~i~l~tN~f~i~~~~~~~~~y~YdV~i~~~~~~~v~~k   89 (898)
                      -+||++|..|++|++..++....+.... .+++||||||.|++|.|+||||+|.+..++..+|||||+|+|+.+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~   82 (900)
T PLN03202          3 ALPPPPPVVPPNVVPIKLEPTKKPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGK   82 (900)
T ss_pred             CCCCCCCCCCcccccccccccccccccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccch
Confidence            4789999999999999888777655555 889999999999999999999999976567789999999987655667677


Q ss_pred             hhHHHHHHHHHHHhhhhccCcceEEeCCcceeecccccCcceEEEEEEcccccccccCCCCCCCCCCCCCCccccccCCC
Q 002636           90 GIGRKILDKVQETYSHELEGKHFAYDGEKSLFTLGSFQRKKLEFTIVVEDLSSNRTARNDSPGGDGSPGEGDRKRMRRPS  169 (898)
Q Consensus        90 ~~~r~i~~~~~~~~~~~~~~~~~vyDG~~~lys~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  169 (898)
                      +++++|+.++++++..++.+..++|||+++|||+.+||.+..++.|.+++++..++..+++|++++++++++.+|.....
T Consensus        83 ~~~~~i~~~~~~~~~~~~~~~~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (900)
T PLN03202         83 GIGRKVIDKVQETYSSDLAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPY  162 (900)
T ss_pred             hhhHHHHHHHHHhhHHhhCCCceeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccC
Confidence            88999999998876555666689999999999999999877788888765322221112344455566555544433445


Q ss_pred             CCceEEEEEEEeeccChHHHHHHHcCCCchhhHHHHHHHHHHHhccccccCceeccccccCCCCCCcccCCCcEEeeecc
Q 002636          170 RSKVIRVEISYAAKIPMQAIANALRGQETEHFQEAMRVLDIILRQNAANQGCLLVRQSFFHNNPRNFADLGGGVMGCRGF  249 (898)
Q Consensus       170 ~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~iq~lniilr~~~~~~~~~~~g~~ff~~~~~~~~~l~~gle~~~Gf  249 (898)
                      +.+.|+|+|++++++++++|.+||.|.......++||+||+|||+.++..++..+||+||.+......++++|+|+|+||
T Consensus       163 ~~~~~~v~i~~~~~i~~~~L~~~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~  242 (900)
T PLN03202        163 QSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGF  242 (900)
T ss_pred             CCceEEEEEEEccccCHHHHHHHHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeee
Confidence            68899999999999999999999999877778899999999999998877788889999987655556899999999999


Q ss_pred             eEEEEecCCeeeEEeecceeeeeccchHHHHHHhhcCCCCCccccHHHHHhhhcCcEEEeecCCceEEEeecCCCCCCcc
Q 002636          250 HSSFRATQSGLSLNMDVSTTMIVKPGPVVNFLLANQNVREPHQIDWNKAKRVLKNLRINTNHSNTEYKITGLSDLPCNQQ  329 (898)
Q Consensus       250 ~~Svr~~~~gl~LniDv~~~~F~~~~~l~d~l~~~~~~~~~~~~~~~~i~~~Lkgl~V~~~y~~r~~~I~~i~~~~a~~~  329 (898)
                      ++|||+++++++||+|+++++|+++++|+|+|.++.+.++....++.++.++|+|++|.++|++++|+|.||++.++++.
T Consensus       243 ~~Svr~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~  322 (900)
T PLN03202        243 HSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCKEQ  322 (900)
T ss_pred             eeEeeeccCceEEeeeeeeeeeecCCcHHHHHHHhcCcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCcce
Confidence            99999999999999999999999999999999987655444344677899999999999999999999999999999999


Q ss_pred             eeecccCCCCCC-CCCCeeeeHHHHHHHhcCCcccCCC-CCceEecCCCCCcccccccceEEccCccccccCCHHHHHHH
Q 002636          330 TFSLKQKSGHNG-DSDAIEITVYEYFVNNRHIKLEYSA-DFPCINVGKPKRASYIPLELCTLVSLQRYTKALSNQQRASL  407 (898)
Q Consensus       330 ~F~~~~~~~~~g-~~~~~~iSv~~Yf~~~Y~i~L~~~p-~lPlv~vg~~~~~~ylP~Elc~i~~~Q~~~~~l~~~q~~~m  407 (898)
                      +|..++.++ +| +..+++|||+|||+++|||+|+| | ++|||++|+.++++|||||||.|+|+|+++++|++.|+++|
T Consensus       323 ~F~~~~~~~-~~~~~~~~~iSv~dYfk~~Yni~l~~-p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~m  400 (900)
T PLN03202        323 TFSLKQRNG-NGNEVETVEITVYDYFVKHRGIELRY-SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSL  400 (900)
T ss_pred             EEEcccCCc-ccccCCcceEEHHHHHHHHcCccccC-CCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHH
Confidence            998764321 11 12246899999999999999999 7 99999999988899999999999999999999999999999


Q ss_pred             HHHhhCCHHHHHHHHHHHHHhccCCchhhhhccCceecCceeEeeeEEcCCCceeecCCcccCCCCCccCcCCceeeccc
Q 002636          408 VEKSRQKPQERMGVLTEAMRRNNYGADQMLRSFGISIGTQFTQVEGRTLPAPKLKVGNGEDFFPRGGRWNFNNKQLVEPM  487 (898)
Q Consensus       408 ik~~~~~P~~R~~~i~~~~~~l~~~~~~~l~~~Gi~i~~~~~~v~arvL~~P~i~~g~~~~~~~~~g~W~~~~~~f~~p~  487 (898)
                      |++++.+|.+|.+.|.++++.++++.+++|++|||+|+.+|++|+||||+||+|.||+++.+.|.+|+||+++.+|++|+
T Consensus       401 ik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~~~p~~g~Wn~~~~kf~~~~  480 (900)
T PLN03202        401 VEKSRQKPQERMKVLTDALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLVEPT  480 (900)
T ss_pred             HHHHccCHHHHHHHHHHHHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcccCCCCCceecCCCEecCCC
Confidence            99999999999999999999998888899999999999999999999999999999987766788999999999999999


Q ss_pred             ccceEEEEEeCCchhHHHHHHHHHHHHhhcCcccCCCcceeecchhhhcCchhHHHHHHHHHHHHhCCCCCeEEEEEecC
Q 002636          488 QIKWWAIVNFSARCDIRSLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKKLPGPPQLLLCILPE  567 (898)
Q Consensus       488 ~l~~W~vv~~~~~~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lvlvIlp~  567 (898)
                      .+++|+|+++.++.++++|++.|.+.|+.+||.+..|..+....++........+++.+++.+++.++..++|+|||||+
T Consensus       481 ~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vIlp~  560 (900)
T PLN03202        481 KIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCILPE  560 (900)
T ss_pred             ccceEEEEEecCchhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEEEcC
Confidence            99999999887666899999999999999999999886543332222222334678999999998776678999999997


Q ss_pred             CCCCcchHHHHHHhhhccCceeeeeeccccchhhHHHHHHHHHhccCCccccccccccCCCCCccCCcEEEEEEEeecCC
Q 002636          568 RKNSDIYGPWKRKNLSEAGIVTQCIAPTKVNDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGS  647 (898)
Q Consensus       568 ~~~~~~Y~~iK~~~~~~~gI~TQci~~~~~~~q~~~Ni~lKiN~KLGG~n~~~~~~~~~~~p~~~~~~tMivG~DV~H~~  647 (898)
                      +++.++|+.||++||++.||+||||..++.++||+.|||||||+||||+||.|+.+.+..+|++.+.+|||||+||+||+
T Consensus       561 ~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~  640 (900)
T PLN03202        561 RKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGS  640 (900)
T ss_pred             CCCcchHHHHHHHHhhccCcccEEeCccccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCC
Confidence            44688999999999999999999998777789999999999999999999999765445678877789999999999999


Q ss_pred             CCCCCCCeEEEEEeecCCCCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHHHHHHhCCCCCceEEEeecCc
Q 002636          648 PGRSDLPSIAAVVSSRQWPSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNT  727 (898)
Q Consensus       648 ~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~IIiyRDGV  727 (898)
                      +++...|||||+|||+|++.+++|++.+++|.+++|+|++|+.+...+.+++|++++|+.|++++++.+|++||||||||
T Consensus       641 ~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGV  720 (900)
T PLN03202        641 PGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGV  720 (900)
T ss_pred             CCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEecCC
Confidence            87655799999999999757899999999999999999998654444456789999999999887789999999999999


Q ss_pred             cccchhh---------HHHhhcccCCCCceEEEEEeeecccceeecCCCCCCCCCeeeeecccccCCcccEEeecccCCc
Q 002636          728 LSCTFLQ---------IEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGRPENVPPGTVVDKGVCHPRNNDFYLCAHAGMI  798 (898)
Q Consensus       728 segq~~~---------~~a~~~l~~~~~Pkit~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~q  798 (898)
                      |||||.+         ++||++++++|+|+||||||+||||+|||+.+..+||+||||||++||+|.+||||||||.++|
T Consensus       721 seGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~q  800 (900)
T PLN03202        721 SESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAGSPDNVPPGTVVDNKICHPRNNDFYMCAHAGMI  800 (900)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccCCCCCCCCceEeccccccCCcceEEEecccccc
Confidence            9999988         7799999888999999999999999999998777999999999999999999999999999999


Q ss_pred             ccccCceEEEEecCCCCCHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCC
Q 002636          799 GTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIKFDEMSDTSSSHNAMTSAGS  878 (898)
Q Consensus       799 GTarPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~t~svsiPaP~~YA~~~a~r~~~~l~~~~~~~~~s~~~~~~~~~~  878 (898)
                      ||||||||+||+||+++++|+||+|||+|||+|+|||++|||||||||||++|+|||+||++++..+++++++++++++.
T Consensus       801 GTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~~~~~~~~~  880 (900)
T PLN03202        801 GTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGGITSAGA  880 (900)
T ss_pred             cCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCccccccccccCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999987654444444444444444


Q ss_pred             CCCCCCccccccCCCCceeC
Q 002636          879 IPVPELPVLHERVCNSMFFC  898 (898)
Q Consensus       879 ~~~~~~~~~h~~~~~~M~~~  898 (898)
                      .+...+.+||++++++||||
T Consensus       881 ~~~~~~~~~h~~~~~~Mfy~  900 (900)
T PLN03202        881 VPVPELPRLHENVASSMFFC  900 (900)
T ss_pred             cccccccccchhhcCCeeeC
Confidence            44556778999999999998

>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily Back     alignment and domain information
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily Back     alignment and domain information
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily Back     alignment and domain information
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily Back     alignment and domain information
>PF13032 DUF3893: Domain of unknown function (DUF3893) Back     alignment and domain information
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query898
4ei1_A859 Crystal Structure Of Human Argonaute2 Length = 859 2e-96
4f3t_A861 Human Argonaute-2 - Mir-20a Complex Length = 861 3e-96
2yhb_A437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 2e-28
4f1n_A1046 Crystal Structure Of Kluyveromyces Polysporus Argon 2e-20
1r4k_A169 Solution Structure Of The Drosophila Argonaute 1 Pa 3e-13
1si2_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 5e-12
2yha_A388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 6e-12
1si3_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 5e-11
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 5e-11
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 2e-08
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 1e-07
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 1e-07
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 5e-06
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure 
Iteration: 1

 Score =  350 bits (898), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 263/876 (30%), Positives = 418/876 (47%), Gaps = 102/876 (11%)
Query: 40  PMARRNHGTKGTPMTLLTNHFEVRMRQTEGYFCHYSVALFYEDGHPVDGKGIGRKILDKV 99
           P  R + GT G  + L  N FE+ + + + Y  HY + +  E       + + R+I++ +
Sbjct: 25  PPPRPDFGTSGRTIKLQANFFEMDIPKIDIY--HYELDIKPEKC----PRRVNREIVEHM 78
Query: 100 QETYSHELEG-KHFAYDGEKSLFTLGSFQ--RKKLEFTIVVEDLSSNRTARNXXXXXXXX 156
            + +  ++ G +   +DG K+L+T       R K+E  + +     +R            
Sbjct: 79  VQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDR------------ 126
Query: 157 XXXXXRKRMRRPSRSKVIRVEISYAAKIPMQAIANALRGQETEHFQEAMRVLDIILRQNA 216
                           + +V I + + + +QA+ +AL G+      E ++ LD+++R   
Sbjct: 127 ----------------IFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLP 170
Query: 217 ANQGCLLVRQSFFHNNPRNFADLGGGVMGCRGFHSSFRATQSGLSLNMDVSTTMIVKPGP 276
           + +   + R SFF  +      LGGG     GFH S R +   + LN+DVS T   K  P
Sbjct: 171 SMRYTPVGR-SFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQP 229
Query: 277 VVNFLLANQNVR--EPHQIDWNKAKRV-----LKNLRINTNHSNT---EYKITGLSDLPC 326
           V+ F+    + +  E  Q     ++RV     +K L++   H      +Y++  ++  P 
Sbjct: 230 VIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPA 289
Query: 327 NQQTFSLKQKSGHNGDSDAIEITVYEYFVNNRHIKLEYSADFPCINVGKPKRASYIPLEL 386
           + QTF L+Q+SG       +E TV +YF +   + L Y    PC+ VG+ ++ +Y+PLE+
Sbjct: 290 SHQTFPLQQESGQT-----VECTVAQYFKDRHKLVLRY-PHLPCLQVGQEQKHTYLPLEV 343
Query: 387 CTLVSLQRYTKALSNQQRASLVEKSRQKPQERMGVLTEAMRRNNYGADQMLRSFGISIGT 446
           C +V+ QR  K L++ Q ++++  + +   +R   +++ MR  ++  D  +R FGI +  
Sbjct: 344 CNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSADFNTDPYVREFGIMVKD 403
Query: 447 QFTQVEGRTLPAPKLKVG--NGEDFFPRGGRWNFNNKQLVEPMQIKWWAIVNFSAR---- 500
           + T V GR L  P +  G  N     P  G W+  NKQ    ++IK WAI  F+ +    
Sbjct: 404 EMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCT 463
Query: 501 -CDIRSLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIXXXXXXXXX 559
              ++S    L +     GM I      F +  Q         VE MF  +         
Sbjct: 464 EVHLKSFTEQLRKISRDAGMPIQG-QPCFCKYAQ-----GADSVEPMFRHLKNTYAGLQL 517
Query: 560 XXXCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPTKV---NDQYITNVLLKINAKLGGM 616
               ILP +  + +Y   KR   +  G+ TQC+    V     Q ++N+ LKIN KLGG+
Sbjct: 518 VV-VILPGK--TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGV 574
Query: 617 NSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGRSDLPSIAAVVSSRQWPSISRYRASVR 676
           N++L L   R  P+  +PV + LG DV+H   G    PSIAAVV S      +RY A+VR
Sbjct: 575 NNIL-LPQGRP-PVFQQPV-IFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVR 630
Query: 677 TQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCTFLQI- 735
            Q  + E+I +L           ++REL + FY ++ + KP  II +R       F Q+ 
Sbjct: 631 VQQHRQEIIQDL---------AAMVRELLIQFYKST-RFKPTRIIFYRDGVSEGQFQQVL 680
Query: 736 --------EASKFLDEKWSPKFTVIVAQKNHHTKFF------QSGRPENVPPGTVVDKGV 781
                   EA   L++ + P  T IV QK HHT+ F      + G+  N+P GT VD  +
Sbjct: 681 HHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKI 740
Query: 782 CHPRNNDFYLCAHAGMIGTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVV 841
            HP   DFYLC+HAG+ GTSRP+HYHVL D+  FS+D+LQ L + L + Y R T +VS+ 
Sbjct: 741 THPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIP 800
Query: 842 TPICYAHLAAAQMSQFIKFDEMSDTSSSHNAMTSAG 877
            P  YAHL A +    +   E      SH +  S G
Sbjct: 801 APAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNG 836
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 Back     alignment and structure
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query898
4f3t_A861 Protein argonaute-2; hydrolase/gene regulation, RN 0.0
4f1n_A1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 0.0
2yhb_A437 QDE-2, post-transcriptional gene silencing protein 1e-105
1yvu_A706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 1e-100
3ho1_A685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 3e-98
2yha_A388 Post-transcriptional gene silencing protein QDE-2; 2e-77
2w42_A427 PIWI, putative uncharacterized protein; RNAI, RISC 3e-63
1u04_A771 Argonaute, hypothetical protein PF0537; RNAI, sile 3e-62
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 5e-37
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 9e-35
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 3e-34
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 4e-32
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 1e-27
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 2e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
2xfm_A150 MIWI, PIWI-like protein 1; RNA-protein complex, di 2e-10
3qir_A148 PIWI-like protein 2; structural genomics consortiu 2e-07
1r6z_P509 Chimera of maltose-binding periplasmic protein AN 2e-06
3o7v_X124 PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, 3e-05
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
 Score =  663 bits (1711), Expect = 0.0
 Identities = 263/928 (28%), Positives = 427/928 (46%), Gaps = 106/928 (11%)

Query: 8   GSEYLPPPPPIIPPNVVPLQSGKVAAPAPKRLPMARRNHGTKGTPMTLLTNHFEVRMRQT 67
           G+ Y    P + PP   P              P  R + GT G  + L  N FE+ + + 
Sbjct: 1   GAMYSGAGPALAPPAPPP------PIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKI 54

Query: 68  EGYFCHYSVALFYEDGHPVDGKGIGRKILDKVQETYSHE-LEGKHFAYDGEKSLFTLGSF 126
           + Y  HY + +  E       + + R+I++ + + +  +    +   +DG K+L+T    
Sbjct: 55  DIY--HYELDIKPE----KCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPL 108

Query: 127 QRKKLEFTIVVEDLSSNRTARNDSPGGDGSPGEGDRKRMRRPSRSKVIRVEISYAAKIPM 186
              + +  + V                   PGEG         + ++ +V I + + + +
Sbjct: 109 PIGRDKVELEVTL-----------------PGEG---------KDRIFKVSIKWVSCVSL 142

Query: 187 QAIANALRGQETEHFQEAMRVLDIILRQNAANQGCLLVRQSFFHNNPRNFADLGGGVMGC 246
           QA+ +AL G+      E ++ LD+++R    +     V +SFF  +      LGGG    
Sbjct: 143 QALHDALSGRLPSVPFETIQALDVVMRHLP-SMRYTPVGRSFFTASEGCSNPLGGGREVW 201

Query: 247 RGFHSSFRATQSGLSLNMDVSTTMIVKPGPVVNFLLANQNVREPHQI-------DWNKAK 299
            GFH S R +   + LN+DVS T   K  PV+ F+    + +   +           K  
Sbjct: 202 FGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFT 261

Query: 300 RVLKNLRINTNHS---NTEYKITGLSDLPCNQQTFSLKQKSGHNGDSDAIEITVYEYFVN 356
           + +K L++   H      +Y++  ++  P + QTF L+Q+SG        E TV +YF +
Sbjct: 262 KEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTV-----ECTVAQYFKD 316

Query: 357 NRHIKLEYSADFPCINVGKPKRASYIPLELCTLVSLQRYTKALSNQQRASLVEKSRQKPQ 416
              + L Y    PC+ VG+ ++ +Y+PLE+C +V+ QR  K L++ Q ++++  + +   
Sbjct: 317 RHKLVLRY-PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAP 375

Query: 417 ERMGVLTEAMRRNNYGADQMLRSFGISIGTQFTQVEGRTLPAPKLKVGNGEDFF--PRGG 474
           +R   +++ MR  ++  D  +R FGI +  + T V GR L  P +  G        P  G
Sbjct: 376 DRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQG 435

Query: 475 RWNFNNKQLVEPMQIKWWAIVNFSAR-----CDIRSLCNNLIRCGEMKGMHINNPHEVFE 529
            W+  NKQ    ++IK WAI  F+ +       ++S    L +     GM I       +
Sbjct: 436 VWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCK 495

Query: 530 ESNQFRREAAPIRVERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVT 589
            +           VE MF  +K       QL++ ILP +    +Y   KR   +  G+ T
Sbjct: 496 YAQG------ADSVEPMFRHLKNTYA-GLQLVVVILPGKT--PVYAEVKRVGDTVLGMAT 546

Query: 590 QCIAP---TKVNDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHG 646
           QC+      +   Q ++N+ LKIN KLGG+N++L     +  P V +   + LG DV+H 
Sbjct: 547 QCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNIL---LPQGRPPVFQQPVIFLGADVTHP 603

Query: 647 SPGRSDLPSIAAVVSSRQWPSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFV 706
             G    PSIAAVV S      +RY A+VR Q  + E+I +L            +REL +
Sbjct: 604 PAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDLAAM---------VRELLI 653

Query: 707 DFYSTSGKRKPENIIIFRLNTLSCTFLQI---------EASKFLDEKWSPKFTVIVAQKN 757
            FY ++   KP  II +R       F Q+         EA   L++ + P  T IV QK 
Sbjct: 654 QFYKSTR-FKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKR 712

Query: 758 HHTKFF------QSGRPENVPPGTVVDKGVCHPRNNDFYLCAHAGMIGTSRPTHYHVLHD 811
           HHT+ F      + G+  N+P GT VD  + HP   DFYLC+HAG+ GTSRP+HYHVL D
Sbjct: 713 HHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWD 772

Query: 812 EIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAA--AQMSQFIKFDEMSDTSSS 869
           +  FS+D+LQ L + L + Y R T +VS+  P  YAHL A  A+     K  + ++ S +
Sbjct: 773 DNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHT 832

Query: 870 HNAMTSAGSIPVPELPVLHERVCNSMFF 897
                      + +   +H+    +M+F
Sbjct: 833 SGQSNGRDHQALAKAVQVHQDTLRTMYF 860
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} PDB: 1t2r_A 1t2s_A Length = 124 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 Back     alignment and structure
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Length = 509 Back     alignment and structure
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 898
d1yvua2392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 5e-77
d1w9ha1316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 2e-60
d1u04a2447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 3e-58
d1si2a_126 b.34.14.1 (A:) Eukaryotic translation initiation f 4e-28
d1t2sa_123 b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila 8e-22
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

 Score =  254 bits (649), Expect = 5e-77
 Identities = 56/369 (15%), Positives = 118/369 (31%), Gaps = 55/369 (14%)

Query: 502 DIRSLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKKLPGPPQLL 561
                   LI   + KG+ +    +    +    RE A    E++  +I K       L+
Sbjct: 54  RKEEFLKELINFLKNKGIKLKIKGKSLILAQT--REEAK---EKLIPVINK--IKDVDLV 106

Query: 562 LCILPERKNSD------IYGPWKRKNLSEAGIVTQCIAPTKVNDQ----YITNVLLKINA 611
           +  L E    D      +Y   KR+ L +  I +Q I    + ++     + NV  ++ A
Sbjct: 107 IVFLEEYPKVDPYKSFLLYDFVKRE-LLKKMIPSQVILNRTLKNENLKFVLLNVAEQVLA 165

Query: 612 KLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGRSDLPSIAAVVSSRQWPSISRY 671
           K G +           +  +   V   +G+D+S  +     + ++A          + RY
Sbjct: 166 KTGNIPY--------KLKEIEGKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVRY 217

Query: 672 RASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCT 731
             +    +   ++                            G +K   I++ R       
Sbjct: 218 YLTSY-PAFGEKLTEKAIG-------------DVFSLLEKLGFKKGSKIVVHR----DGR 259

Query: 732 FLQIEASKFLD--EKWSPKFTVIVAQKNHHTKFFQSGRPENVPPGTVVDKGVCHPRNNDF 789
             + E + F    E +     ++   K ++ +FF     E    G           ++  
Sbjct: 260 LYRDEVAAFKKYGELYGYSLELLEIIKRNNPRFF---SNEKFIKGYFYK----LSEDSVI 312

Query: 790 YLCAHAGMIGTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHL 849
               +    GT +P     ++ E+    + L   + SL+ +   S   + +   + Y+  
Sbjct: 313 LATYNQVYEGTHQPIKVRKVYGELPV--EVLCSQILSLTLMNYSSFQPIKLPATVHYSDK 370

Query: 850 AAAQMSQFI 858
               M + I
Sbjct: 371 ITKLMLRGI 379
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query898
d1yvua2392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 100.0
d1u04a2447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1w9ha1316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 100.0
d1u04a1322 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1si2a_126 Eukaryotic translation initiation factor 2C 1, EIF 99.94
d1t2sa_123 Argonaute 2 {Fruit fly (Drosophila melanogaster) [ 99.9
d1b0aa2121 Tetrahydrofolate dehydrogenase/cyclohydrolase {Esc 80.66
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=0  Score=474.55  Aligned_cols=328  Identities=16%  Similarity=0.161  Sum_probs=250.5

Q ss_pred             CCCEEEEEEE---CCCH-HHHHHHHHHHHHHHHCCCCCCC-CCCEEECCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             3203999994---8710-1999999999997613965479-940030331311374058999999999974999990999
Q 002636          488 QIKWWAIVNF---SARC-DIRSLCNNLIRCGEMKGMHINN-PHEVFEESNQFRREAAPIRVERMFEIIKKKLPGPPQLLL  562 (898)
Q Consensus       488 ~i~~W~vi~~---~~~~-~~~~f~~~L~~~~~~~G~~i~~-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvl  562 (898)
                      .+-.|.+|.+   .+.. .+++|++.|.+.|+..||++.. |..+.....      ..+..+.+.+.+. +. .++++++
T Consensus        36 ~~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~-~~~~l~~  107 (392)
T d1yvua2          36 DVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQT------REEAKEKLIPVIN-KI-KDVDLVI  107 (392)
T ss_dssp             SEEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEEEECSS------TTHHHHHHHHHHT-TT-SSCSEEE
T ss_pred             CCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEECCC------CCCHHHHHHHHHH-HC-CCCCEEE
T ss_conf             63442478999963106679999999999998629264578867131277------5115999999984-02-6777899


Q ss_pred             EEECCCCC------CCCHHHHHHHHHHCCCCEEEEEECCCC---CHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99069999------864577899764104922366511455---635-67798999874049965333533347888746
Q 002636          563 CILPERKN------SDIYGPWKRKNLSEAGIVTQCIAPTKV---NDQ-YITNVLLKINAKLGGMNSLLTLEHSRSIPLVS  632 (898)
Q Consensus       563 vilp~~~~------~~~Y~~iK~~~~~~~gI~TQci~~~~~---~~q-~~~ni~lKiN~KlGG~n~~~~~~~~~~lp~~~  632 (898)
                      ||+|+.++      .++|+.||++| .+.||+||||..+++   +.+ ++.||++|||+||||+||.+..     .+   
T Consensus       108 vi~~~~~~~~~~~~~~~Y~~IK~~~-~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~-----~~---  178 (392)
T d1yvua2         108 VFLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKE-----IE---  178 (392)
T ss_dssp             EEEC----------CHHHHHHHHHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESC-----CT---
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEECHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCC-----CC---
T ss_conf             9976888866555404799999998-54996648988666168983589999999999984983468878-----89---


Q ss_pred             CCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             89289999983139999999981899996137897540368999616873351023477888835899999999999871
Q 002636          633 KPVTMILGMDVSHGSPGRSDLPSIAAVVSSRQWPSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTS  712 (898)
Q Consensus       633 ~~~tmiiG~DV~H~~~~~~~~pSi~a~VaS~d~~~~~~y~~~~~~Q~~~~e~i~~l~~p~~~~~~~~~~~e~l~~f~~~~  712 (898)
                      ..+|||||+||+|++++.. .++++|++++.+......++.....|..++|++.            .+++++|..|++ +
T Consensus       179 ~~~tmiIGiDv~h~~~~~~-~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~~------------~~~~~~l~~~~~-~  244 (392)
T d1yvua2         179 GKVDAFVGIDISRITRDGK-TVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLTE------------KAIGDVFSLLEK-L  244 (392)
T ss_dssp             TCCSEEEEECEEECCCSSS-CCCEEEEEEEECTTSCEEEEEEEEECSCTTHHHH------------HHHHHHHHHHHH-T
T ss_pred             CCCEEEEEEEEEECCCCCC-CCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHH------------HHHHHHHHHHHH-H
T ss_conf             9975999999871588898-4638999999868997789998854776078999------------999999999999-6


Q ss_pred             CCCCCCEEEEEECCCCCC-CHHH-HHHHHCCCCCCCCEEEEEEEEECCCCEEECCCCCCCCCCEEEEECCCCCCCCCCEE
Q ss_conf             999993299961575632-2146-89751026888860999996003332010279999999910651455568866179
Q 002636          713 GKRKPENIIIFRLNTLSC-TFLQ-IEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGRPENVPPGTVVDKGVCHPRNNDFY  790 (898)
Q Consensus       713 ~~~~P~~IiiyRDGvseg-q~~~-~~a~~~l~~~y~P~it~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~i~~p~~~dFy  790 (898)
                      ++.+|++|||||||++.+ ++.. ++||++    +.|++++|+|+||||+|||+.   +|+++||++.    .+...+||
T Consensus       245 ~~~~P~rIIi~RdG~~~~~El~~i~~a~~~----~~pki~~IvV~Krh~~Rff~~---~~~~~Gt~v~----~~~~~~~~  313 (392)
T d1yvua2         245 GFKKGSKIVVHRDGRLYRDEVAAFKKYGEL----YGYSLELLEIIKRNNPRFFSN---EKFIKGYFYK----LSEDSVIL  313 (392)
T ss_dssp             TCCTTCEEEEEESSCCCHHHHHHHHHHHHH----HTCEEEEEEEECSSCCCEECS---CSCCTTEEEE----BSSSEEEE
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHHH----CCCCEEEEEEEECCCEEECCC---CCCCCCCEEE----CCCCEEEE
T ss_conf             499986699995887737999999999986----499589999981588265678---9999998771----79892999


Q ss_pred             EECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             401358766546724799956999998899999999640012136885345426899999999852113
Q 002636          791 LCAHAGMIGTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIK  859 (898)
Q Consensus       791 L~sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~svsiPaP~~yA~~~a~r~~~~l~  859 (898)
                      ++||.+.|||+||+||+|++||+  +.|+||++||.|||+|+||++++|+|+|+||||++|+|+|.+++
T Consensus       314 ~~s~~~~qGT~rP~~Y~vl~d~~--~~d~l~~lt~~Lc~l~~~~t~svslPapi~YA~~lA~~~r~~~~  380 (392)
T d1yvua2         314 ATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIE  380 (392)
T ss_dssp             CCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSS
T ss_pred             EECCCCCCCCCCCCEEEEECCCC--CHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHCCC
T ss_conf             97688578777885899988989--98999999999775126718998007799999999999751178
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure