Citrus Sinensis ID: 002667

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-----
MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARRWSLVY
cccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcHHHHHccccccHHccccccccccccccccHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccHHHHHHccccccHHHHHHHHHccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccEEEEEEEccccccccccEEEEEEEEEccccccccEEEccccccccccccHHHHcccccccccccccccccccccccccccccccccEEEEEEccccccEEEEEEEcccEEEEEEccccccccccccccHHHHHHHHHcccccccccEEEEEcc
cccEEcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccEEEEEHccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHEEEEEcccccHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHcHHHHHHccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccHHccccHHHHHHHccccccccccccccccccccccEEEEEccccccccccEEEEccccccccEEEEEEEccccccccccEEEEEEEEEEccccccccEEEEccccccccccccccccccccccccccccccEccHHHHHHccccccEEEEEEEEcccccccEEEEEEEcccEEEEEEccccEEEEccccccHHHHHHHHcccccHHHHHcEEEEEc
magirlhviSPLVLVAVgkcardpsvfVRKCAANALPKLHELRQEEITSAIEEIVGILlndrspgvvGAAAAAFAsicpnnftligRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCiesshsekdvfdvnvaledngipsrtydseLVNLVSRSYIEGLGEyltrssdtnarssdlngarftsgktndDVKLLLQctspllwshnSAVVLAAAGVhwimspkedVKRIVKPLLFILRSSGASKYVVLCNIQVFAKalphlfvphyedffvsssdsyqskALKLEILSSIVTESSISSVFKEFQdyirdpdrrfAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTsdiesgngeADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSldsikvpeARVMIIWMVGeyssvgvkIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCakggdmwtITRLFSYLLELAECDLNYDVRDRARFFKKLFShnlcsqvpeetnalqenkdlpLVLVECIFRKqenlaasepindrfylpgslsqivlhaapgyeplpkpcsslcddlgqfsnsidRTTAlgeewtgsssngtddpdtsgsldeesgsnydsqqsipglsdnsgtgdsasegdrncdpliqisdagiacsnengashsgfpdlegMMSKRALESwldeqpgssspsaseQIQVRQSSArisignigrqvkaksytlldpangnglKVYYSfsseastispqLVCLETFFENcssetmsevtlvdeeshkaldlADLTLATTassltsqsdlptlvpmeeitslepgqTMKRILEVRFHHHLLPLKLALhcngkklpvklrpdigyfikpvpmdMETFIEMESRLPGMFEYARRWSLVY
MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALedngipsrtydselvNLVSRSYIEGLGEyltrssdtnarssdlngarftsgktnddVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSivtessisSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLfrsldsikvpEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALgeewtgsssngtddpdtSGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSsarisignigrqVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASsltsqsdlptlvPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARRWSLVY
MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGaaaaafaSICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKleilssivtessissvFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLiqsiisiksiikqDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKaldladltlattassltsqsdlPTLVPMEEITSLEPGQTMKRILEVRFhhhllplklalhCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARRWSLVY
***IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYL************************DDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQF*********************************************************************************************************************************SIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLV*******LDLADLTL*****************************TMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARRWSL**
***IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLC****************PLVLVECIFRKQENLA****INDRFYLPGSLSQIVLHAAPGYEPLP******************************************************************************************************************************************************VKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMS*************************************************TMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARRWSLVY
MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGE*************************************************DRNCDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALES**********************SARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARRWSLVY
*AGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDI*SGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCS*************************************************************************************************************************************SSARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEE********************SQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARRWSLVY
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SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCDPLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARRWSLVY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query895 2.2.26 [Sep-21-2011]
Q9M2T1 987 AP3-complex subunit beta- no no 0.968 0.878 0.581 0.0
Q13367 1082 AP-3 complex subunit beta yes no 0.560 0.463 0.333 4e-78
Q9JME5 1082 AP-3 complex subunit beta yes no 0.558 0.462 0.335 4e-77
Q32PG1 1084 AP-3 complex subunit beta no no 0.585 0.483 0.325 5e-77
Q7YRF1 1091 AP-3 complex subunit beta no no 0.549 0.450 0.331 1e-75
O00203 1094 AP-3 complex subunit beta no no 0.551 0.451 0.333 1e-74
Q556J81108 AP-3 complex subunit beta yes no 0.574 0.463 0.291 1e-64
Q9Z1T1 1105 AP-3 complex subunit beta no no 0.369 0.299 0.352 2e-54
Q759E2781 AP-3 complex subunit beta yes no 0.493 0.565 0.272 3e-28
P52303949 AP-1 complex subunit beta no no 0.482 0.455 0.256 2e-27
>sp|Q9M2T1|AP3BA_ARATH AP3-complex subunit beta-A OS=Arabidopsis thaliana GN=AP3BA PE=2 SV=2 Back     alignment and function desciption
 Score =  993 bits (2568), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/899 (58%), Positives = 661/899 (73%), Gaps = 32/899 (3%)

Query: 1   MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
           MAGIRLHVI+PL L AV KCARDP+V+VR+CAANALPKLH+LR EE  SAIEE+VGILLN
Sbjct: 1   MAGIRLHVIAPLALAAVSKCARDPAVYVRRCAANALPKLHDLRLEEHASAIEELVGILLN 60

Query: 61  DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
           D SPGVVGAAAAAF SICPNNF LIG+NY+ LCQILPDVEEWGQILLI  LLRYVVA HG
Sbjct: 61  DHSPGVVGAAAAAFTSICPNNFKLIGKNYKKLCQILPDVEEWGQILLIGTLLRYVVARHG 120

Query: 121 LVKESIMSSLLCIESS-HSEKDVFDVNVALE-DNGIPSRTYDSELVNLVSRSYIEGLGEY 178
           LV+ES+M S+    S+   EKD    ++ L+ ++G  S ++D  LV+LVS+ YI+G  EY
Sbjct: 121 LVRESLMLSIHGTNSNGFCEKDGLGRDLTLDKEDGGKSDSFDVNLVSLVSKCYIQGPDEY 180

Query: 179 LTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK 238
           L+RSS T+  SS  +    TS   N+DVK+LLQCTSPLLWS+NSAVVLAAAGV WIM+P 
Sbjct: 181 LSRSSCTDTVSSAFDTKETTSIAHNEDVKILLQCTSPLLWSNNSAVVLAAAGVQWIMAPL 240

Query: 239 EDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALK 298
           EDVK+IVKPLLF+LRSS ASKYVVLCNI VFAKA+P LF PH+E+FF+ SSD+YQ KA K
Sbjct: 241 EDVKKIVKPLLFLLRSSSASKYVVLCNILVFAKAVPSLFAPHFENFFICSSDAYQVKAYK 300

Query: 299 LEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLAL 358
           LE+LS I T SSI+S+ +EF+DYI+DPDRRFAADTVAAIGLCA++L  +  TC++GLLAL
Sbjct: 301 LEMLSLIATTSSIASILREFEDYIKDPDRRFAADTVAAIGLCAKRLMTIPTTCLDGLLAL 360

Query: 359 IRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVM 418
           +RQE    D ES +GEA VL+Q+++SI+++I++DP  HEKV+IQLFRSLDSIKV  AR  
Sbjct: 361 VRQESFAGDFESADGEAGVLVQAVMSIQTMIERDPLRHEKVLIQLFRSLDSIKVAAARAT 420

Query: 419 IIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI 478
           IIWMVG Y S+G  IPRMLTT+ KYLAW FKSEA ETKLQILNT  KVL+ A+ GD   +
Sbjct: 421 IIWMVGVYCSLGHIIPRMLTTITKYLAWSFKSEASETKLQILNTIAKVLISAEAGDFHML 480

Query: 479 TRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQENKDLPLVLVECI 537
            R+  Y+ EL E DL+YD+RDR RF KKL S  L S  P E++ A QEN  +   +VE +
Sbjct: 481 KRIVVYVFELGEYDLSYDIRDRTRFLKKLLSCKLASHEPAEDSVASQEN--IAAHVVEHV 538

Query: 538 FRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTA 597
           F ++    +   +++RFYLPGSLSQIVLHAAPGYEPLPKPCS + ++  Q S+ +D+   
Sbjct: 539 FGRKLKSVSPITLHNRFYLPGSLSQIVLHAAPGYEPLPKPCSFVYEEQDQLSD-LDKQRE 597

Query: 598 LGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCD--- 654
              +  GS        ++S + DE   S+YDS+ S    SD S  GD  +  +   D   
Sbjct: 598 AAADLDGSE-------ESSETGDENGSSDYDSESS--NGSDFSSEGDERTVSNDANDPAA 648

Query: 655 PLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSS 714
           PLIQIS+  ++             D E + S+RAL+ WLD+QP +S+ + S     + S 
Sbjct: 649 PLIQISETSVSA------------DQEELRSRRALDLWLDDQPSTSNQTPSALNSNQSSY 696

Query: 715 ARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETM 774
           A+ISIG++G +VK KSY+L+DP NG+GLKV Y+F SE S +SP  VC+E  FEN S+E +
Sbjct: 697 AKISIGDVGSRVKPKSYSLVDPGNGSGLKVDYAFLSEVSNVSPLHVCVEVLFENSSAEPI 756

Query: 775 SEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRF 834
            EV L DEES K  D ++ TL   A++  S +++PTL+PMEEI+ LEP Q+ KR+++VRF
Sbjct: 757 LEVNLEDEESMKVADSSEQTLVGKANA--SYNNIPTLIPMEEISCLEPHQSTKRLIQVRF 814

Query: 835 HHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARRWSL 893
           HHHLLP++L LH N KK+PVKLRPD+GY +KP  M +E F+  ESRLPGMFEY+RR + 
Sbjct: 815 HHHLLPMRLTLHYNEKKVPVKLRPDLGYLVKPFSMSIEEFLATESRLPGMFEYSRRCTF 873
Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. AP-3 appears to be involved in the sorting of a subset of transmembrane proteins targeted to lysosomes and lysosome-related organelles.
Arabidopsis thaliana (taxid: 3702)
>sp|Q13367|AP3B2_HUMAN AP-3 complex subunit beta-2 OS=Homo sapiens GN=AP3B2 PE=1 SV=2 Back     alignment and function description
>sp|Q9JME5|AP3B2_MOUSE AP-3 complex subunit beta-2 OS=Mus musculus GN=Ap3b2 PE=1 SV=2 Back     alignment and function description
>sp|Q32PG1|AP3B1_BOVIN AP-3 complex subunit beta-1 OS=Bos taurus GN=AP3B1 PE=2 SV=1 Back     alignment and function description
>sp|Q7YRF1|AP3B1_CANFA AP-3 complex subunit beta-1 OS=Canis familiaris GN=AP3B1 PE=2 SV=1 Back     alignment and function description
>sp|O00203|AP3B1_HUMAN AP-3 complex subunit beta-1 OS=Homo sapiens GN=AP3B1 PE=1 SV=3 Back     alignment and function description
>sp|Q556J8|AP3B_DICDI AP-3 complex subunit beta OS=Dictyostelium discoideum GN=ap3b-1 PE=3 SV=1 Back     alignment and function description
>sp|Q9Z1T1|AP3B1_MOUSE AP-3 complex subunit beta-1 OS=Mus musculus GN=Ap3b1 PE=1 SV=2 Back     alignment and function description
>sp|Q759E2|AP3B_ASHGO AP-3 complex subunit beta OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APL6 PE=3 SV=2 Back     alignment and function description
>sp|P52303|AP1B1_RAT AP-1 complex subunit beta-1 OS=Rattus norvegicus GN=Ap1b1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query895
359486795 1140 PREDICTED: AP3-complex subunit beta-A-li 0.995 0.781 0.687 0.0
255584875 1121 conserved hypothetical protein [Ricinus 0.982 0.784 0.668 0.0
224109508991 predicted protein [Populus trichocarpa] 0.979 0.884 0.656 0.0
356501063 1129 PREDICTED: AP3-complex subunit beta-A-li 0.978 0.775 0.639 0.0
357492243 1126 AP-3 complex subunit beta-2 [Medicago tr 0.975 0.775 0.640 0.0
356551707 1129 PREDICTED: AP3-complex subunit beta-A-li 0.978 0.775 0.640 0.0
240255649 1115 AP3-complex subunit beta-A [Arabidopsis 0.968 0.777 0.581 0.0
449459904 1127 PREDICTED: AP3-complex subunit beta-A-li 0.974 0.773 0.593 0.0
18410287987 AP3-complex subunit beta-A [Arabidopsis 0.968 0.878 0.581 0.0
7076791 1123 adaptor protein/ adaptin-like [Arabidops 0.965 0.769 0.583 0.0
>gi|359486795|ref|XP_002278568.2| PREDICTED: AP3-complex subunit beta-A-like [Vitis vinifera] gi|296086225|emb|CBI31666.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1164 bits (3012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 615/895 (68%), Positives = 711/895 (79%), Gaps = 4/895 (0%)

Query: 1    MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
            MAGIRL VI+P+VLVAV KCARDPSV+VRKCAANALPKLH+LR EE T A+EEIVGILLN
Sbjct: 129  MAGIRLLVIAPIVLVAVEKCARDPSVYVRKCAANALPKLHDLRIEENTPALEEIVGILLN 188

Query: 61   DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
            D SPGVVGAAAAAF S+CPNN +LIGRNYR LC++LPDVEEWGQILLIEILLR+V+A HG
Sbjct: 189  DHSPGVVGAAAAAFTSVCPNNLSLIGRNYRRLCEVLPDVEEWGQILLIEILLRFVIAKHG 248

Query: 121  LVKESIMSSLLCIESSHSEKDVFDVNVALE-DNGIPSRTYDSELVNLVSRSYIEGLGEYL 179
            LV+ESIM    C ESS SEKD  D+N A E DNG   R + SELVN+VSR YIEG  EYL
Sbjct: 249  LVQESIMFQSCCTESSQSEKDGSDINSAFEEDNGDTGRGFMSELVNMVSRCYIEGPDEYL 308

Query: 180  TRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE 239
            +R S  N  SS L+ + F SG+ NDDVK+LLQCTSPLLWSHNSAVVLAAAGVHWIM+P+E
Sbjct: 309  SRLSYINEVSSGLDRSCFMSGRGNDDVKMLLQCTSPLLWSHNSAVVLAAAGVHWIMAPRE 368

Query: 240  DVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKL 299
            DVKRIVKPLLF+LRSS  SKYVVLCNIQVFAKA+P LF PH+EDFF+SSSDSYQ KALKL
Sbjct: 369  DVKRIVKPLLFLLRSSHVSKYVVLCNIQVFAKAMPFLFAPHFEDFFISSSDSYQIKALKL 428

Query: 300  EILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALI 359
            EILSSI  +SSISS+F+EFQDYIRDPDRRFAADTV AIGLCA++LPK+AN C+EGLLAL 
Sbjct: 429  EILSSIAMDSSISSIFQEFQDYIRDPDRRFAADTVTAIGLCAQRLPKVANICLEGLLALT 488

Query: 360  RQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMI 419
            R+E L  D    + E ++LIQ+I+SI++I+KQDP  HEKVI+QL RSLDSIKVP AR +I
Sbjct: 489  REEYLIGDFVCMDEETNILIQAIMSIEAILKQDPPAHEKVIVQLVRSLDSIKVPAARAII 548

Query: 420  IWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTIT 479
            IW++GEY+++G  IPRMLTTVL YLA CF SEA ETKLQILNT +KVLLCAKG D+WT  
Sbjct: 549  IWIIGEYNTIGEIIPRMLTTVLTYLARCFASEAQETKLQILNTAVKVLLCAKGKDLWTFK 608

Query: 480  RLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFR 539
             + SY+LELA+CDL+YDVRDRA   K+L S  L   + EET+ L + KD+P +L ECIFR
Sbjct: 609  SVLSYVLELAKCDLSYDVRDRAHILKELMSCYLGQDLEEETDCLPQ-KDIPQILAECIFR 667

Query: 540  KQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALG 599
             Q    + EPIN RFYLPGSLSQIVLHAAPGYEPLPKPCS LC+DL Q  N +      G
Sbjct: 668  GQRKPMSPEPINFRFYLPGSLSQIVLHAAPGYEPLPKPCSLLCNDLHQRLNVVQGIEGSG 727

Query: 600  EEWTGSSSNGTDDPDT-SGSLDEESGSNYDSQQSIPGLSDNSGTGDSASEGDRNCDPLIQ 658
            E  T S S  TDDPD  S S +EES S Y SQ SI   S +   G S SE D N DPLIQ
Sbjct: 728  EGATNSDSYETDDPDMLSQSANEESTSGYSSQNSISRSSGSDEPG-SESEDDDNVDPLIQ 786

Query: 659  ISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSSARIS 718
             SD GI+   + G S SG   +E +MSK+ LESWLDEQPG S P+ S+Q QVR+SSARIS
Sbjct: 787  FSDVGISNKKQTGVSQSGSDSMEELMSKQTLESWLDEQPGLSDPNLSKQSQVRRSSARIS 846

Query: 719  IGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVT 778
            IG+IG +VK K Y LLDP NGNGL+V YSFSSE S++SPQLVC+E  FENCS+E+MS+V 
Sbjct: 847  IGDIGGRVKPKIYGLLDPTNGNGLRVNYSFSSEVSSMSPQLVCVELIFENCSAESMSKVL 906

Query: 779  LVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHL 838
            LVDEES+K LD  D +L  T SS+ SQ+D+P LV MEEI S+EPGQ+ K IL+V FHHHL
Sbjct: 907  LVDEESNKGLDSEDQSLVATESSMPSQNDVPNLVYMEEIASIEPGQSTKCILQVCFHHHL 966

Query: 839  LPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARRWSL 893
            LP+KLAL CNGKK PVKLRPDIGYFIKP+PMD+E F+  ES LPGMFEY RR + 
Sbjct: 967  LPVKLALWCNGKKYPVKLRPDIGYFIKPLPMDVEVFVNKESHLPGMFEYERRCTF 1021

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255584875|ref|XP_002533153.1| conserved hypothetical protein [Ricinus communis] gi|223527048|gb|EEF29234.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224109508|ref|XP_002315219.1| predicted protein [Populus trichocarpa] gi|222864259|gb|EEF01390.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356501063|ref|XP_003519348.1| PREDICTED: AP3-complex subunit beta-A-like [Glycine max] Back     alignment and taxonomy information
>gi|357492243|ref|XP_003616410.1| AP-3 complex subunit beta-2 [Medicago truncatula] gi|355517745|gb|AES99368.1| AP-3 complex subunit beta-2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356551707|ref|XP_003544215.1| PREDICTED: AP3-complex subunit beta-A-like [Glycine max] Back     alignment and taxonomy information
>gi|240255649|ref|NP_974443.4| AP3-complex subunit beta-A [Arabidopsis thaliana] gi|332645870|gb|AEE79391.1| AP3-complex subunit beta-A [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449459904|ref|XP_004147686.1| PREDICTED: AP3-complex subunit beta-A-like [Cucumis sativus] gi|449503249|ref|XP_004161908.1| PREDICTED: AP3-complex subunit beta-A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18410287|ref|NP_567022.1| AP3-complex subunit beta-A [Arabidopsis thaliana] gi|306531058|sp|Q9M2T1.2|AP3BA_ARATH RecName: Full=AP3-complex subunit beta-A; AltName: Full=Adapter-related protein complex 3 subunit beta-A; AltName: Full=Adaptor protein complex AP-3 subunit beta-A; AltName: Full=Beta-3B-adaptin; AltName: Full=Clathrin assembly protein complex 3 beta-A large chain gi|332645869|gb|AEE79390.1| AP3-complex subunit beta-A [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7076791|emb|CAB75906.1| adaptor protein/ adaptin-like [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query895
TAIR|locus:20999611115 PAT2 "protein affected traf 0.853 0.685 0.527 1.8e-190
FB|FBgn0003210 1178 rb "ruby" [Drosophila melanoga 0.484 0.368 0.329 4.3e-60
MGI|MGI:1333879 1105 Ap3b1 "adaptor-related protein 0.623 0.504 0.275 1.2e-58
DICTYBASE|DDB_G0274003 1108 ap3b-2 "beta adaptin" [Dictyos 0.185 0.149 0.347 4.4e-56
DICTYBASE|DDB_G0272578 1108 ap3b-1 "beta adaptin" [Dictyos 0.185 0.149 0.347 4.4e-56
RGD|1308950 1082 Ap3b2 "adaptor-related protein 0.279 0.231 0.325 2.4e-55
MGI|MGI:1100869 1082 Ap3b2 "adaptor-related protein 0.279 0.231 0.325 3.9e-55
UNIPROTKB|F1RI97 1082 F1RI97 "Uncharacterized protei 0.279 0.231 0.329 4e-54
UNIPROTKB|E5RJ68 1045 AP3B1 "AP-3 complex subunit be 0.312 0.267 0.316 5.2e-54
UNIPROTKB|F1P7W8 1084 AP3B2 "Uncharacterized protein 0.279 0.230 0.325 5.5e-54
TAIR|locus:2099961 PAT2 "protein affected trafficking 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1846 (654.9 bits), Expect = 1.8e-190, P = 1.8e-190
 Identities = 419/794 (52%), Positives = 517/794 (65%)

Query:     1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
             MAGIRLHVI+PL L AV KCARDP+V+VR+CAANALPKLH+LR EE  SAIEE+VGILLN
Sbjct:   129 MAGIRLHVIAPLALAAVSKCARDPAVYVRRCAANALPKLHDLRLEEHASAIEELVGILLN 188

Query:    61 DRSPGVVGXXXXXXXSICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
             D SPGVVG       SICPNNF LIG+NY+ LCQILPDVEEWGQILLI  LLRYVVA HG
Sbjct:   189 DHSPGVVGAAAAAFTSICPNNFKLIGKNYKKLCQILPDVEEWGQILLIGTLLRYVVARHG 248

Query:   121 LVKESIMSSLLCIESS-HSEKDVF--DVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGE 177
             LV+ES+M S+    S+   EKD    D+ +  ED G  S ++D  LV+LVS+ YI+G  E
Sbjct:   249 LVRESLMLSIHGTNSNGFCEKDGLGRDLTLDKEDGG-KSDSFDVNLVSLVSKCYIQGPDE 307

Query:   178 YLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP 237
             YL+RSS T+  SS  +    TS   N+DVK+LLQCTSPLLWS+NSAVVLAAAGV WIM+P
Sbjct:   308 YLSRSSCTDTVSSAFDTKETTSIAHNEDVKILLQCTSPLLWSNNSAVVLAAAGVQWIMAP 367

Query:   238 KEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKAL 297
              EDVK+IVKPLLF+LRSS ASKYVVLCNI VFAKA+P LF PH+E+FF+ SSD+YQ KA 
Sbjct:   368 LEDVKKIVKPLLFLLRSSSASKYVVLCNILVFAKAVPSLFAPHFENFFICSSDAYQVKAY 427

Query:   298 KXXXXXXXXXXXXXXXXFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLA 357
             K                 +EF+DYI+DPDRRFAADTVAAIGLCA++L  +  TC++GLLA
Sbjct:   428 KLEMLSLIATTSSIASILREFEDYIKDPDRRFAADTVAAIGLCAKRLMTIPTTCLDGLLA 487

Query:   358 LIRQELLTSDIESGNGEADVLXXXXXXXXXXXXXDPSCHEKVIIQLFRSLDSIKVPEARV 417
             L+RQE    D ES +GEA VL             DP  HEKV+IQLFRSLDSIKV  AR 
Sbjct:   488 LVRQESFAGDFESADGEAGVLVQAVMSIQTMIERDPLRHEKVLIQLFRSLDSIKVAAARA 547

Query:   418 MIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWT 477
              IIWMVG Y S+G  IPRMLTT+ KYLAW FKSEA ETKLQILNT  KVL+ A+ GD   
Sbjct:   548 TIIWMVGVYCSLGHIIPRMLTTITKYLAWSFKSEASETKLQILNTIAKVLISAEAGDFHM 607

Query:   478 ITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQENKDLPLVLVEC 536
             + R+  Y+ EL E DL+YD+RDR RF KKL S  L S  P E++ A QEN  +   +VE 
Sbjct:   608 LKRIVVYVFELGEYDLSYDIRDRTRFLKKLLSCKLASHEPAEDSVASQEN--IAAHVVEH 665

Query:   537 IFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTT 596
             +F ++    +   +++RFYLPGSLSQIVLHAAPGYEPLPKPCS + ++  Q S+ +D+  
Sbjct:   666 VFGRKLKSVSPITLHNRFYLPGSLSQIVLHAAPGYEPLPKPCSFVYEEQDQLSD-LDK-- 722

Query:   597 ALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDSAS-EGDRN--C 653
                +    +  +G+++   +G  DE   S+YDS+ S  G SD S  GD  +   D N   
Sbjct:   723 ---QREAAADLDGSEESSETG--DENGSSDYDSESS-NG-SDFSSEGDERTVSNDANDPA 775

Query:   654 DPLIQISDAGIACSNENGASHSGFPDL---EGMMSKRALESWLDEQPGSSSPSASEQIQV 710
              PLIQIS+  ++   E   S     DL   +   +     S L+    S +  +   +  
Sbjct:   776 APLIQISETSVSADQEELRSRRAL-DLWLDDQPSTSNQTPSALNSNQSSYAKISIGDVGS 834

Query:   711 R---QSSARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQL-VCLETFF 766
             R   +S + +  GN G  +K     L + +N + L V      E S+  P L V LE   
Sbjct:   835 RVKPKSYSLVDPGN-GSGLKVDYAFLSEVSNVSPLHVCVEVLFENSSAEPILEVNLEDE- 892

Query:   767 ENCSSETMSEVTLV 780
             E+      SE TLV
Sbjct:   893 ESMKVADSSEQTLV 906
GO:0005634 "nucleus" evidence=ISM
GO:0005794 "Golgi apparatus" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA
GO:0030117 "membrane coat" evidence=IEA
GO:0080171 "lytic vacuole organization" evidence=IMP
GO:0006896 "Golgi to vacuole transport" evidence=IMP
GO:0051453 "regulation of intracellular pH" evidence=IMP
FB|FBgn0003210 rb "ruby" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1333879 Ap3b1 "adaptor-related protein complex 3, beta 1 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274003 ap3b-2 "beta adaptin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0272578 ap3b-1 "beta adaptin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|1308950 Ap3b2 "adaptor-related protein complex 3, beta 2 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1100869 Ap3b2 "adaptor-related protein complex 3, beta 2 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RI97 F1RI97 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E5RJ68 AP3B1 "AP-3 complex subunit beta-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P7W8 AP3B2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018474001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (1118 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query895
pfam01602522 pfam01602, Adaptin_N, Adaptin N terminal region 3e-42
PTZ00429746 PTZ00429, PTZ00429, beta-adaptin; Provisional 2e-16
pfam01602522 pfam01602, Adaptin_N, Adaptin N terminal region 1e-14
COG5096757 COG5096, COG5096, Vesicle coat complex, various su 7e-12
COG5096757 COG5096, COG5096, Vesicle coat complex, various su 3e-06
PTZ00429746 PTZ00429, PTZ00429, beta-adaptin; Provisional 4e-05
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information 
 Score =  161 bits (410), Expect = 3e-42
 Identities = 79/309 (25%), Positives = 134/309 (43%), Gaps = 21/309 (6%)

Query: 207 KLLLQCTSPLLWSHNSAVVLAAAGV-HWIMSPKEDVKRIVKPLL-FILRSSGASKYVVLC 264
           K LL+    LL + N+AV+  A      +    E +   V  L   +       +YV L 
Sbjct: 228 KELLEDILNLLQNSNNAVLYEAVKTIIHLDPEPELIVLAVNALGRLLSSPDENLRYVALR 287

Query: 265 NIQVFAKALPH-LFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIR 323
           N+    +  P  +       F + + D    +   L++L  +V ES++  + KE   Y+ 
Sbjct: 288 NLNKILEKHPPAVQHLDLIIFCLKTDDDISIRLRALDLLYKLVDESNVKEIVKELLKYVS 347

Query: 324 D-PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSI 382
           +  D  F    V AIG  A K P  A  C++ LL     ELL+        E       +
Sbjct: 348 EIADPEFKIKLVKAIGRLAEKFPTDAEWCIDVLL-----ELLSLAGSYVVDEI------V 396

Query: 383 ISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLK 442
             I+ II++ P   E ++  L   L+ I+ PEAR   +W++GEY  +   IP   + +L+
Sbjct: 397 EVIRDIIRKYPELREYILEHLCELLEDIESPEARAAALWILGEYGEL---IPNSPSDLLR 453

Query: 443 YLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELA-ECDLNYDVRDRA 501
            +   F  E+++ +L +L   +K  L     D      +   +L LA +   + ++RDRA
Sbjct: 454 SILEVFVLESLKVRLALLTALVK--LSLTFPDEEVQNLIVQVVLSLATQDSSDLELRDRA 511

Query: 502 RFFKKLFSH 510
             + +L S 
Sbjct: 512 VEYLRLLSL 520

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional Back     alignment and domain information
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 895
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 100.0
PTZ00429746 beta-adaptin; Provisional 100.0
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 100.0
COG5096757 Vesicle coat complex, various subunits [Intracellu 100.0
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 100.0
PF14796145 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit 100.0
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 100.0
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 99.96
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 99.9
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 99.8
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 99.78
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 99.4
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.89
PTZ00429746 beta-adaptin; Provisional 98.29
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.21
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.2
PRK09687280 putative lyase; Provisional 98.07
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 97.79
PRK09687280 putative lyase; Provisional 97.75
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.43
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 97.3
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 97.17
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 97.16
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 97.11
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 97.07
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 97.06
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 97.0
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 96.92
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.91
KOG0212675 consensus Uncharacterized conserved protein [Funct 96.67
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 96.64
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 96.6
PF14764459 SPG48: AP-5 complex subunit, vesicle trafficking 96.59
COG5096757 Vesicle coat complex, various subunits [Intracellu 96.41
KOG04131529 consensus Uncharacterized conserved protein relate 96.24
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.06
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 96.04
KOG2259823 consensus Uncharacterized conserved protein [Funct 95.99
KOG1824 1233 consensus TATA-binding protein-interacting protein 95.8
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 95.76
PF05804708 KAP: Kinesin-associated protein (KAP) 95.64
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 95.58
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 95.44
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 95.36
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 95.22
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 95.15
KOG0212675 consensus Uncharacterized conserved protein [Funct 95.08
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 95.07
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 94.79
PF05804708 KAP: Kinesin-associated protein (KAP) 94.72
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 94.71
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 94.7
TIGR02270410 conserved hypothetical protein. Members are found 94.7
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 94.55
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 94.48
smart00809104 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin 94.43
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 94.03
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 93.83
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 93.79
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 93.75
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 93.61
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 93.52
KOG1242569 consensus Protein containing adaptin N-terminal re 93.26
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 92.83
TIGR02270410 conserved hypothetical protein. Members are found 92.75
KOG1824 1233 consensus TATA-binding protein-interacting protein 92.33
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 91.78
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 90.94
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 90.75
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 90.0
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 89.02
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 88.9
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 88.79
COG1413335 FOG: HEAT repeat [Energy production and conversion 88.53
COG50981128 Chromosome condensation complex Condensin, subunit 88.42
PF14797130 SEEEED: Serine-rich region of AP3B1, clathrin-adap 88.03
PF1036392 DUF2435: Protein of unknown function (DUF2435) 87.38
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 87.09
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 86.79
KOG2259823 consensus Uncharacterized conserved protein [Funct 86.05
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 85.52
PF02883115 Alpha_adaptinC2: Adaptin C-terminal domain; InterP 85.52
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 84.97
KOG1242569 consensus Protein containing adaptin N-terminal re 84.89
COG1413335 FOG: HEAT repeat [Energy production and conversion 84.36
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 84.33
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 83.91
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 82.28
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 81.72
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-164  Score=1394.27  Aligned_cols=760  Identities=36%  Similarity=0.554  Sum_probs=620.3

Q ss_pred             CCCccchhhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHhccCCcchhHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCC
Q 002667            1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN   80 (895)
Q Consensus         1 MssIRv~~I~piv~~aIkk~l~D~SPYVRK~AA~AI~Kly~ld~pd~~~~L~eil~~LL~D~~p~VvgsAv~Af~EIcP~   80 (895)
                      |||||||+|+||||+|||+|++|++|||||+|||||+|||+++ |+++++|+++|++||+|++|.|+|+|++||.||||+
T Consensus       132 lSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd-~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe  210 (968)
T KOG1060|consen  132 LSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD-PEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE  210 (968)
T ss_pred             HHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC-hhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh
Confidence            7999999999999999999999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             CccchHHHHHHHHHhCCCCChhhHHHHHHHHHhhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccc
Q 002667           81 NFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYD  160 (895)
Q Consensus        81 r~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~~f~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~  160 (895)
                      |++||||||||||++|+|+|||||+++|+||+||||  ++|++|+.|-..                  +++.+.     +
T Consensus       211 rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR--~~l~~P~~~~~~------------------~e~n~~-----~  265 (968)
T KOG1060|consen  211 RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYAR--HQLPDPTVVDSS------------------LEDNGR-----S  265 (968)
T ss_pred             HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHH--hcCCCccccccc------------------cccCcc-----c
Confidence            999999999999999999999999999999999985  689988643221                  111110     0


Q ss_pred             hhhhhhhhhhcccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHH
Q 002667          161 SELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED  240 (895)
Q Consensus       161 ~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~  240 (895)
                      .+           .++.+              + ....++.+|+||++||++++|||||+|++||||||++|||++|+.+
T Consensus       266 ~~-----------~~~~~--------------~-~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~  319 (968)
T KOG1060|consen  266 CN-----------LKDKY--------------N-EIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ  319 (968)
T ss_pred             cc-----------ccccc--------------c-ccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH
Confidence            00           00000              0 0113467999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhCCcccccccccceeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 002667          241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQD  320 (895)
Q Consensus       241 l~~~~~pLv~LL~s~~eiqyvvL~~I~~i~~~~p~lF~~~l~~Ffi~~sDp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~  320 (895)
                      +..+++||+|||++++++||++|++|++|+.++|.+|.||++.||+|.+||+.||.+||+||++|+|+.|+..||+||++
T Consensus       320 ~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~  399 (968)
T KOG1060|consen  320 VTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQT  399 (968)
T ss_pred             HHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCChhHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhhhccccccCCCCCCchhhhHHHHHHHHHhhCCcchHHHH
Q 002667          321 YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVI  400 (895)
Q Consensus       321 Yv~~~D~ef~~~aI~AIG~~A~~~p~~a~~cl~~Ll~LLs~~~~~~~~~~~~~~~~vv~E~V~vik~Llq~~P~~~~~ii  400 (895)
                      |+++.|.+|+..||+|||+||.++-.++++||+||+.||++           .++.||.|+|++||.|||++|..|.++|
T Consensus       400 YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llss-----------hde~Vv~eaV~vIk~Llq~~p~~h~~ii  468 (968)
T KOG1060|consen  400 YIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSS-----------HDELVVAEAVVVIKRLLQKDPAEHLEIL  468 (968)
T ss_pred             HHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhc-----------ccchhHHHHHHHHHHHHhhChHHHHHHH
Confidence            99999999999999999999999999999999999999984           3667999999999999999999999999


Q ss_pred             HHHHHhhhccCchhhHHhhhhhhccccCCCCCccchHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhcCCCChHHHHH
Q 002667          401 IQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR  480 (895)
Q Consensus       401 ~~L~~~ld~i~~p~ArAsIiWLLGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILtaaaKL~~~~p~e~~~~l~~  480 (895)
                      .+|++.+++|..|.|||+|+||+||||.   .+|.++|||||+++|+|.+|..+||+|||+++||||+.++.    .+++
T Consensus       469 ~~La~lldti~vp~ARA~IiWLige~~e---~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~----~~kl  541 (968)
T KOG1060|consen  469 FQLARLLDTILVPAARAGIIWLIGEYCE---IVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNID----QTKL  541 (968)
T ss_pred             HHHHHHhhhhhhhhhhceeeeeehhhhh---hcchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechh----hHHH
Confidence            9999999999999999999999999995   58999999999999999999999999999999999999876    5789


Q ss_pred             HHHHHHHHHccCCChHHHhHHHHHHHHccCCCCCCCccchhhhhccCcchHHHHHhhhccCCCCCC-CCCCCccCcCCCc
Q 002667          481 LFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAA-SEPINDRFYLPGS  559 (895)
Q Consensus       481 L~qyvL~la~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~~~~~~la~~lf~~~~p~~~-~~~~~~r~~~lGS  559 (895)
                      ++||+++|++||.+||+|||||||++|+.+..               .+ .++++.+|.+.+|++. ++.++.|+|++||
T Consensus       542 l~~Yv~~L~~yD~sYDiRDRaRF~r~l~~~~~---------------~L-s~h~~ei~l~~Kpa~~~es~f~~~~~~~gs  605 (968)
T KOG1060|consen  542 LVQYVFELARYDLSYDIRDRARFLRQLISPLE---------------AL-SKHAREIFLASKPAPVLESSFKDRHYQLGS  605 (968)
T ss_pred             HHHHHHHHhccCCCcchhHHHHHHHHHhccHH---------------HH-HHHHHHHhhccCCCccCcccccCCCcccch
Confidence            99999999999999999999999999998731               22 3788888877766665 8889999999999


Q ss_pred             HHHHhhccCCCCccCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002667          560 LSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDN  639 (895)
Q Consensus       560 LS~~~~~~~~gY~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  639 (895)
                      +||+++++++||+|||+|+.+.++..+      .+   .+++.|++++|++++.+++++++++++++++++.+.++    
T Consensus       606 lS~lLn~~a~GY~~lp~~~~~~~d~~~------~~---~~a~~~~~~~e~~e~~~~~~~s~~~ses~~~~~~~~e~----  672 (968)
T KOG1060|consen  606 LSLLLNAPAPGYEPLPNWPAVAPDPFP------DS---ERAKLLDSDSEEEETGDDESWSDPESESGESSNFSREG----  672 (968)
T ss_pred             HHHHhcCcCcCCccCCCccccCCCCCc------ch---hhcccccCCccccccccccCCCCCccccccCCcccccc----
Confidence            999999999999999999999887201      11   23566888888765433333333333332222211111    


Q ss_pred             CCCCCCCCCCCCCCCc-ccccccccccccCCCCCCCCCC----CCcccccchhhhccccCCCCCCCCC-------Cchhh
Q 002667          640 SGTGDSASEGDRNCDP-LIQISDAGIACSNENGASHSGF----PDLEGMMSKRALESWLDEQPGSSSP-------SASEQ  707 (895)
Q Consensus       640 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ld~~~~~~~~-------~~~~~  707 (895)
                       +++..++++++++++ .-+.+.++.+.++.+++++..+    +.+.+..+.++....+++..+.+..       .+.++
T Consensus       673 -ge~~dsn~~~~~~~d~sdqss~~~ss~~d~~s~se~e~e~~~e~~k~~pet~~~sl~l~d~~~~n~~P~~~~~~~~~l~  751 (968)
T KOG1060|consen  673 -GEENDSNEEKDSEDDFSDQSSYEESSAEDSESSSEAESEPTPEKLKEKPETKDVSLDLNDFTPQNGKPVLPERNDPDLA  751 (968)
T ss_pred             -cccccccccccccccccccchhccccccccccccccccccCCCccCCCcccccccccccccCCCCCCCCCCCCCChhhh
Confidence             111111111111110 0000111111011111111101    0001111112222355665443331       12222


Q ss_pred             hh---hhccccceeeccccc-cccCcccccccccCCCCeeEEEEecCCCCCCCCCeEEEEEEEEeCCCCceeeeEeeccc
Q 002667          708 IQ---VRQSSARISIGNIGR-QVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEE  783 (895)
Q Consensus       708 ~~---~~~~~~~~~~~~~~~-~~~~~~~~LL~~~~g~GL~v~Y~f~r~p~~~~~~mv~v~l~f~N~s~~~~~~i~~~~~~  783 (895)
                      ..   +.....+.+.....+ .++.|++||||++.|+||.++|+|+|+|    +  |+++++|+|.++.++.+||+    
T Consensus       752 ~d~~~~~~~~s~~~~~~~~p~~i~~~~~ell~~~~g~gl~~~y~f~r~~----~--~~i~~~~~n~~~~~~~~~~l----  821 (968)
T KOG1060|consen  752 ADDEFFSLTGSRNSKPLKIPTHIEEKSIELLNEVEGSGLDLEYSFSRLP----D--VSISLHFTNKSDLELLGIHL----  821 (968)
T ss_pred             ccccccccccccccccccCCccCcchhHhhhhhcccCCcceeeeccCCC----C--eeEEEecccCCCccccccee----
Confidence            11   222222222222222 5788999999999999999999999999    2  99999999999999999999    


Q ss_pred             ccchhhhhhhhhhhccccccCCCCCCCcccCCcccccCCCCeeEEEEEEecCCCCccceEEEEEcCCeeeeEeecCcccc
Q 002667          784 SHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYF  863 (895)
Q Consensus       784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~l~p~~~~~~~~~i~f~~~~~~~~~~l~~~~~~~~v~~~p~vgel  863 (895)
                        ++|.||.                  |++|.+|++|+||+++++.|||||||+||++.|+||+.+|  .|+++|||||+
T Consensus       822 --~~p~gm~------------------i~ef~~i~s~~pg~~~~~~~~i~F~dst~~~~~~l~~~~g--~~~~~~pvge~  879 (968)
T KOG1060|consen  822 --KLPAGMS------------------IKEFSPIESLPPGASASVVLGIDFCDSTQAAEWQLLTDDG--RVRFQPPVGEL  879 (968)
T ss_pred             --ecccccc------------------ccccccccccCCCcceeeeeeeeccccccceeEEEEeccC--cEEecCchhhh
Confidence              3699994                  9999999999999999999999999999999999999999  99999999999


Q ss_pred             cccccCCHHHHHHHhhcCCCccccccccE
Q 002667          864 IKPVPMDMETFIEMESRLPGMFEYARRWS  892 (895)
Q Consensus       864 ~~p~~m~~~~f~~~~~~l~GM~e~~~~~~  892 (895)
                      ++||.|++++|+||||+|+|||||...+.
T Consensus       880 ~~~v~~~~~~~~~E~~~L~gln~~~~~l~  908 (968)
T KOG1060|consen  880 VQPVRMSEEDFKKERGKLGGLNEHVIQLE  908 (968)
T ss_pred             hccccCCHHHHHhhhhhhcccchhheeee
Confidence            99999999999999999999999987664

>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF14797 SEEEED: Serine-rich region of AP3B1, clathrin-adaptor complex Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query895
1w63_B584 Ap1 Clathrin Adaptor Core Length = 584 6e-19
2vgl_B591 Ap2 Clathrin Adaptor Core Length = 591 1e-18
2xa7_B592 Ap2 Clathrin Adaptor Core In Active Complex With Ca 1e-18
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core Length = 584 Back     alignment and structure 
Iteration: 1

 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 133/308 (43%), Gaps = 27/308 (8%)
Query: 213 TSPLLWSHNSAVVLAAAGVHW----IMSPKED-----VKRIVKPLLFILRSSGASKYVVL 263
            +P L   NSAVVL+A  V      ++S   D     +K++  PL+ +L +    +YV L
Sbjct: 244 VTPRLSHANSAVVLSAVKVLMKFMEMLSKDLDYYATLLKKLAPPLVTLLSAEPEPQYVPL 303
Query: 264 CNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKXXXXXXXXXXXXXXXXFKEFQDYIR 323
            NI +  +  P +     + FFV  +D    K  K                  E ++Y  
Sbjct: 304 RNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYAT 363
Query: 324 DPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLXXXXX 383
           + D  F    V AIG CA K+ + A  CV  LL LI+ ++     E+     D+      
Sbjct: 364 EVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIKDIFRKY-- 421
Query: 384 XXXXXXXXDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKY 443
                    P+ +E VI  L  +LDS   PEAR  +IW+VGEY+        +L + L  
Sbjct: 422 ---------PNKYESVIATLCENLDSDDEPEARAAMIWIVGEYAERSDNADELLESFLD- 471
Query: 444 LAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARF 503
               F  E+ + +LQ+L   +K+ L         + ++ S  L   + D N D+RDR   
Sbjct: 472 ---GFHDESTQVQLQLLTAIVKLFLKKPTETQELVQQVLS--LATQDSD-NPDLRDRGYI 525
Query: 504 FKKLFSHN 511
           + +L S +
Sbjct: 526 YWRLLSTD 533
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core Length = 591 Back     alignment and structure
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 592 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query895
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 4e-61
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 5e-32
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 1e-26
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 3e-10
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 1e-04
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-04
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
 Score =  217 bits (554), Expect = 4e-61
 Identities = 119/499 (23%), Positives = 214/499 (42%), Gaps = 72/499 (14%)

Query: 23  DPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNF 82
           DP+  +R   A A+  +  +R ++IT  + E +   L D  P V   AA   A +   N 
Sbjct: 97  DPNPLIR---ALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN- 152

Query: 83  TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDV 142
                           + E      ++ L   +  S+ +V  + +++L  I  SH   ++
Sbjct: 153 --------------AQMVEDQG--FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196

Query: 143 FDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKT 202
            D+N    +  + +    +E   +        + + L+  +  + R              
Sbjct: 197 LDLNPQNINKLLTALNECTEWGQIF-------ILDCLSNYNPKDDR-------------- 235

Query: 203 NDDVKLLLQCTSPLLWSHNSAVVLAAAGV---HWIMSPKED------VKRIVKPLLFILR 253
             + + + +  +P L   NSAVVL+A  V      + PK+       +K++  PL+ +L 
Sbjct: 236 --EAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS 293

Query: 254 SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISS 313
                +YV L NI +  +  P +     + FFV  +D    K  KL+I+  + ++++I+ 
Sbjct: 294 GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ 353

Query: 314 VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNG 373
           V  E ++Y  + D  F    V AIG CA K+ + A  CV  LL LI+             
Sbjct: 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ-----------TK 402

Query: 374 EADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKI 433
              V+ ++I+ I+ I ++ P+ +E +I  L  +LDS+  P+AR  +IW+VGEY+      
Sbjct: 403 VNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNA 462

Query: 434 PRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECD- 492
                 +L+     F  E+ + +L +L   +K+ L            L   +L LA  D 
Sbjct: 463 DE----LLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS----ETQELVQQVLSLATQDS 514

Query: 493 LNYDVRDRARFFKKLFSHN 511
            N D+RDR   + +L S +
Sbjct: 515 DNPDLRDRGYIYWRLLSTD 533
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 895
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 1e-44
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 6e-44
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 9e-05
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query895
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 100.0
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.54
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.35
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.34
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.34
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.34
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.09
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.91
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.83
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.78
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.73
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.72
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.69
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.63
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.35
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.33
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.22
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.63
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.56
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.53
d1e42a1120 Beta2-adaptin AP2 ear domain, N-terminal subdomain 97.44
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.44
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 96.79
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 95.67
d2dwya1129 ADP-ribosylation factor binding protein Gga1 domai 95.53
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 95.5
d1p4ua_145 ADP-ribosylation factor binding protein Gga3 domai 95.36
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 94.82
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 93.78
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 93.08
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 85.88
d1gyva_120 Gamma1-adaptin domain {Human (Homo sapiens) [TaxId 81.26
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2dwya1 b.1.10.2 (A:511-639) ADP-ribosylation factor binding protein Gga1 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p4ua_ b.1.10.2 (A:) ADP-ribosylation factor binding protein Gga3 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure