Citrus Sinensis ID: 002696

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-

MAPDPNSASGSGTKDEASVKVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYREDH

ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEcccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccEEEEEccccccccEEEEEcccccccccccccccccccEEEEccEEcccHHHHHHHHHcccccccccccEEEEcccccccccc

cccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHcccccccHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccEEEcccccccccccccEEEEcccccHHHHHHHHHHHHHccHHccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccEEHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHEEccccHHHHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHccccEEEEEccccccccEEEEEcEEEEEEcccccccEEEcEEcccccEEEEccccEEEcccccccccHHHcEEEEEEccccccccc

mapdpnsasgsgtkdeasvkvpakdpkkkddkkdedLSEEDLALKQQLELYVErvqdpdpglQKVALESMRTeirtstssmtsvpkplkflrphygtlkayyetmpdsdlKKYMADILSVLALTMSAEGERESLKYRLLgsegdigswGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHvdatnfkrTCLYLTSaakylpgpddmLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGitleldddmvpddddryALQDIVNNVKLSEGYLTLARdievmepkspediyKAHLldgrasagasVDSARQNLAATFVNAFVnagfgqdklmtvpsdassggssgnwlfknkehgKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIvncgirndcDPALALLSEYVGREDACIRIGAIMGLgisyagtqndQIRHKLSTIlndaksplDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDrseselgepltrlIPLGLgllylgkqesvEATAEVSKTFNEKIRKYCDMTLLscayagtgnVLKVQNLLGHCaqhhekgeayqgpaVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLlcisnpkvnvmdtlsrlshdtdSEVAMAAVISLGligsgtnnARIAGMLRNLSsyyykdanLLFCVRIAQGLVHmgkglltlnpyhsdrfllsptALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMqprmlltvdenlkplsvpvrvgqavdvvgqagrpktitgfqthstpvllaagdraelatekyiplspilegfvilkenpdyredh

mapdpnsasgsgtkdeasvkvpakdpkkkddkkdedlseEDLALKQQLELyvervqdpdpglQKVALESMrteirtstssmtsvpkplkFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHgitleldddmvPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAgrpktitgfqthstpvLLAAGDRAELATEkyiplspilegfvilkenpdyredh

MAPDPNSASGSGTKDEasvkvpakdpkkkddkkdedlseedlalkQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPeavdllmevedldllvehvdATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELdddmvpddddRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPltrliplglgllylgKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSvpvrvgqavdvvgqagrPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYREDH

***************************************************************************************LKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVM*******IYKAHLLD************RQNLAATFVNAFVNAGFGQDKL***************WLFK******MSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILK*********

*******************************************LKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYA*********DDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLEL*************************GYLTLARDIEVMEPKSPEDIYKAHLLDGR********SARQNLAATFVNAFVNAGFGQDKLMTVPSD***GGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVG***********QTHSTPVLLAAGDRAELATEKYIPLSPILEGFVI***********

***************************************EDLALKQQLELYVERVQDPDPGLQKVALESMRT***********VPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVP********SGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYREDH

************************************LSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENP******

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		891	2.2.26 [Sep-21-2011]
Q9SIV2		891	26S proteasome non-ATPase	yes	no	0.997	0.997	0.860	0.0
Q6XJG8		891	26S proteasome non-ATPase	no	no	0.995	0.995	0.833	0.0
Q8VDM4		908	26S proteasome non-ATPase	yes	no	0.970	0.952	0.528	0.0
Q4FZT9		908	26S proteasome non-ATPase	yes	no	0.970	0.952	0.528	0.0
Q13200		908	26S proteasome non-ATPase	yes	no	0.974	0.955	0.524	0.0
P56701		908	26S proteasome non-ATPase	yes	no	0.976	0.958	0.524	0.0
Q5R9I6		908	26S proteasome non-ATPase	yes	no	0.974	0.955	0.523	0.0
Q7S8R8		902	26S proteasome regulatory	N/A	no	0.962	0.951	0.481	0.0
P87048		891	26S proteasome regulatory	yes	no	0.973	0.973	0.479	0.0
Q54BC6		893	26S proteasome non-ATPase	yes	no	0.950	0.948	0.488	0.0

>sp\|Q9SIV2\|RPN1A_ARATH 26S proteasome non-ATPase regulatory subunit 2 1A OS=Arabidopsis thaliana GN=RPN1A PE=1 SV=2	Back alignment and function desciption

 Score = 1532 bits (3967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 768/892 (86%), Positives = 844/892 (94%), Gaps = 3/892 (0%)

Query: 1   MAP--DPNSASGSGTKDEASVKVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDP 58
           MAP  DPNS  G   KDEA++KVP+KDPKKKD+KKDEDLSEEDL LKQ LELYVERVQDP
Sbjct: 1   MAPTQDPNSVGGGAKKDEATLKVPSKDPKKKDEKKDEDLSEEDLELKQNLELYVERVQDP 60

Query: 59  DPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADIL 118
           +P LQK ALESMR EIR STSSMTSVPKPLKFLRPHYGTLKA++ETM DSDLKKY++DIL
Sbjct: 61  NPELQKAALESMRQEIRASTSSMTSVPKPLKFLRPHYGTLKAFHETMADSDLKKYLSDIL 120

Query: 119 SVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLM 178
           SVLALTMSA+GERESL++RL+G+EGDIGSWGHEYVRNLAGEIAQEY KRQ++EASIDDLM
Sbjct: 121 SVLALTMSADGERESLRFRLIGTEGDIGSWGHEYVRNLAGEIAQEYTKRQSEEASIDDLM 180

Query: 179 ELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDD 238
           ELVQ+IVAFHMKHNAE EAVDLLM+VEDLDLL+EHVD TNFKRTC YLTSAA+YLPGPDD
Sbjct: 181 ELVQQIVAFHMKHNAETEAVDLLMDVEDLDLLLEHVDKTNFKRTCNYLTSAARYLPGPDD 240

Query: 239 MLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITL 298
           MLVLDI+YMIY+KFEE+PNALQIALFLDN QYVKQ+FTSC DLL+KKQFCY++ARHGIT 
Sbjct: 241 MLVLDISYMIYMKFEEYPNALQIALFLDNTQYVKQVFTSCTDLLKKKQFCYMIARHGITF 300

Query: 299 ELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAG 358
           ELDD+MV DDDDR ALQDIVNN KLSEGYLTLARDIEVME K+PEDIYKAHLLDGRAS+G
Sbjct: 301 ELDDEMVADDDDREALQDIVNNTKLSEGYLTLARDIEVMEAKTPEDIYKAHLLDGRASSG 360

Query: 359 ASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASL 418
           ASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSD+++G SSGNWLFKNKEHGK SAAASL
Sbjct: 361 ASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDSTTG-SSGNWLFKNKEHGKTSAAASL 419

Query: 419 GMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED 478
           GMI LWDVDSGL+Q+DKYFHS DN +IAGALLGVGIVNCGI+NDCDPALALL +Y+ +ED
Sbjct: 420 GMIQLWDVDSGLSQLDKYFHSNDNPIIAGALLGVGIVNCGIKNDCDPALALLGDYIDKED 479

Query: 479 ACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEV 538
           + +RIGAIMGLGISYAG+QNDQIR+KLS ILNDAK+PLDVIAF+++SLG+IYVGSCNEEV
Sbjct: 480 SSVRIGAIMGLGISYAGSQNDQIRNKLSPILNDAKAPLDVIAFASLSLGMIYVGSCNEEV 539

Query: 539 AQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMT 598
           AQ+IIFALMDRSE+ELG+ LTR +PLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMT
Sbjct: 540 AQSIIFALMDRSEAELGDALTRFLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMT 599

Query: 599 LLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH 658
           LLSCAYAGTGNVLKVQ+LL  C +H EKG+ +QGPAVLG+AMVAM+EELG++M IRSLE 
Sbjct: 600 LLSCAYAGTGNVLKVQDLLAQCGEHLEKGDIHQGPAVLGLAMVAMSEELGVDMEIRSLER 659

Query: 659 LLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718
           +LQYGEQNIRRAVPLALGLLCISNPKV VMDTLSRLSHDTDSEVAM+A+ISLGLIG+GTN
Sbjct: 660 MLQYGEQNIRRAVPLALGLLCISNPKVTVMDTLSRLSHDTDSEVAMSAIISLGLIGAGTN 719

Query: 719 NARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIV 778
           NARIAGMLRNLSSYYYKD +LLFCVRIAQGLVHMGKGLLTL+P+HS+RFLLSPTALAGIV
Sbjct: 720 NARIAGMLRNLSSYYYKDMSLLFCVRIAQGLVHMGKGLLTLSPFHSERFLLSPTALAGIV 779

Query: 779 TTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAG 838
           T L ACLDMK +I+GKYHYVLYFLVLAMQPRM+LTVDENLKPLSVPVRVGQAVDVVGQAG
Sbjct: 780 TLLHACLDMKPIILGKYHYVLYFLVLAMQPRMMLTVDENLKPLSVPVRVGQAVDVVGQAG 839

Query: 839 RPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYRED 890
           RPKTITGFQTHSTPVLLAAG+RAELAT+KYIPLSPILEGF+ILKENPDYRE+
Sbjct: 840 RPKTITGFQTHSTPVLLAAGERAELATDKYIPLSPILEGFIILKENPDYREE 891

Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins (By similarity). Required during embryogenesis (PubMed:16169895). Required for optimal plant growth and stress responses (PubMed:19605416).
Arabidopsis thaliana (taxid: 3702)

>sp\|Q6XJG8\|RPN1B_ARATH 26S proteasome non-ATPase regulatory subunit 2 1B OS=Arabidopsis thaliana GN=RPN1B PE=2 SV=1	Back alignment and function description

>sp\|Q8VDM4\|PSMD2_MOUSE 26S proteasome non-ATPase regulatory subunit 2 OS=Mus musculus GN=Psmd2 PE=1 SV=1	Back alignment and function description

>sp\|Q4FZT9\|PSMD2_RAT 26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus GN=Psmd2 PE=2 SV=1	Back alignment and function description

>sp\|Q13200\|PSMD2_HUMAN 26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens GN=PSMD2 PE=1 SV=3	Back alignment and function description

>sp\|P56701\|PSMD2_BOVIN 26S proteasome non-ATPase regulatory subunit 2 OS=Bos taurus GN=PSMD2 PE=1 SV=2	Back alignment and function description

>sp\|Q5R9I6\|PSMD2_PONAB 26S proteasome non-ATPase regulatory subunit 2 OS=Pongo abelii GN=PSMD2 PE=2 SV=1	Back alignment and function description

>sp\|Q7S8R8\|RPN1_NEUCR 26S proteasome regulatory subunit rpn-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpn-1 PE=3 SV=2	Back alignment and function description

>sp\|P87048\|RPN1_SCHPO 26S proteasome regulatory subunit rpn1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn1 PE=1 SV=2	Back alignment and function description

>sp\|Q54BC6\|PSMD2_DICDI 26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium discoideum GN=psmD2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		891
255553635		895	26S proteasome regulatory subunit rpn1,	1.0	0.995	0.906	0.0
225446449		890	PREDICTED: 26S proteasome non-ATPase reg	0.998	1.0	0.902	0.0
449453553		896	PREDICTED: 26S proteasome non-ATPase reg	1.0	0.994	0.878	0.0
356542984		885	PREDICTED: 26S proteasome non-ATPase reg	0.993	1.0	0.871	0.0
356517488		885	PREDICTED: 26S proteasome non-ATPase reg	0.993	1.0	0.873	0.0
357474441		886	26S proteasome non-ATPase regulatory sub	0.994	1.0	0.869	0.0
18399399		891	26S proteasome regulatory subunit N1 [Ar	0.997	0.997	0.860	0.0
224132892		890	predicted protein [Populus trichocarpa]	0.995	0.996	0.865	0.0
297832660		891	AtRPN1a/RPN1A [Arabidopsis lyrata subsp.	0.995	0.995	0.865	0.0
297799128		891	26S proteasome subunit RPN1b [Arabidopsi	0.995	0.995	0.836	0.0

>gi\|255553635\|ref\|XP_002517858.1\| 26S proteasome regulatory subunit rpn1, putative [Ricinus communis] gi\|223542840\|gb\|EEF44376.1\| 26S proteasome regulatory subunit rpn1, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1589 bits (4115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 811/895 (90%), Positives = 859/895 (95%), Gaps = 4/895 (0%)

Query: 1   MAPDPNSASGSGT----KDEASVKVPAKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQ 56
           MAPDPN+ASGSG+    +DEASVKVP+KDPKKKD+KKDEDLS+EDLALKQQLELYVER Q
Sbjct: 1   MAPDPNNASGSGSGATARDEASVKVPSKDPKKKDEKKDEDLSDEDLALKQQLELYVERAQ 60

Query: 57  DPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMAD 116
           DPDP LQKVALESMR EIRTSTSSMTSVPKPLKFLRPHYGTLKA+YETM DSDLKK +AD
Sbjct: 61  DPDPALQKVALESMRQEIRTSTSSMTSVPKPLKFLRPHYGTLKAFYETMTDSDLKKLLAD 120

Query: 117 ILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDD 176
           ILSVLALTMSAEGERESLKYRLLGSE DIGSWGHEYVRNLAGE AQEYAKRQ++E+SIDD
Sbjct: 121 ILSVLALTMSAEGERESLKYRLLGSESDIGSWGHEYVRNLAGECAQEYAKRQSEESSIDD 180

Query: 177 LMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGP 236
           LMELV +IVAFHMKHNAEPEAVDLLMEVEDLDLL++HVD+TNFKRTCLYLTSAA+YLPGP
Sbjct: 181 LMELVTQIVAFHMKHNAEPEAVDLLMEVEDLDLLIDHVDSTNFKRTCLYLTSAARYLPGP 240

Query: 237 DDMLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGI 296
           DDMLVLDIAYMIY+K+EE+ NALQIALFLDNMQYVKQ+FT CDD+LRKKQF YI+ARHGI
Sbjct: 241 DDMLVLDIAYMIYIKYEEYSNALQIALFLDNMQYVKQVFTVCDDVLRKKQFSYIVARHGI 300

Query: 297 TLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRAS 356
           T ELDD++  DD+DR ALQDIVNN KLSEGYLTLARDIEVMEPKSP+DIYKAHLLDGRAS
Sbjct: 301 TFELDDEVAADDEDREALQDIVNNTKLSEGYLTLARDIEVMEPKSPDDIYKAHLLDGRAS 360

Query: 357 AGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAA 416
           AG SVDSARQNLAATFVNAFVNAGFGQDKLMTVPSD+SSGGSSGNWLFKNKEHGK SAAA
Sbjct: 361 AGVSVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDSSSGGSSGNWLFKNKEHGKASAAA 420

Query: 417 SLGMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGR 476
           SLGMILLWDVDSGLAQIDKYFHS DNHVIAGALLGVGIVNC I+NDCDPALALL +Y+ +
Sbjct: 421 SLGMILLWDVDSGLAQIDKYFHSNDNHVIAGALLGVGIVNCSIKNDCDPALALLGDYIDK 480

Query: 477 EDACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNE 536
           ED+ IRIGAIMGLGI+YAG+QN+QIR KLS ILNDAK+PLDVIAF+AISLGLIYVGSCNE
Sbjct: 481 EDSSIRIGAIMGLGIAYAGSQNEQIRFKLSPILNDAKAPLDVIAFTAISLGLIYVGSCNE 540

Query: 537 EVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCD 596
           EVAQAIIFALMDRSESEL EPLTR +PLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCD
Sbjct: 541 EVAQAIIFALMDRSESELQEPLTRFLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCD 600

Query: 597 MTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSL 656
           MTLLSCAYAGTGNVLKVQNLLGHCAQH EKGE +QGPAVLGIAMVAMAEELGLEMAIRSL
Sbjct: 601 MTLLSCAYAGTGNVLKVQNLLGHCAQHLEKGETHQGPAVLGIAMVAMAEELGLEMAIRSL 660

Query: 657 EHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 716
           EHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIG+G
Sbjct: 661 EHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGAG 720

Query: 717 TNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAG 776
           TNNARIAGMLRNLSSYYYKDA+LLFCVRIAQGLVH+GKGLLTLNPYHSDRFLLSPTALAG
Sbjct: 721 TNNARIAGMLRNLSSYYYKDASLLFCVRIAQGLVHLGKGLLTLNPYHSDRFLLSPTALAG 780

Query: 777 IVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQ 836
           ++T L ACLDMKA+I+GKYHYVLYFLVLAMQPRML+TVDENLKPLSVPVRVGQAVDVVGQ
Sbjct: 781 LITMLHACLDMKAIILGKYHYVLYFLVLAMQPRMLMTVDENLKPLSVPVRVGQAVDVVGQ 840

Query: 837 AGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYREDH 891
           AGRPKTITGFQTHSTPVLLAAGDRAELATEKY+PLSPILEGFVILKENPDY EDH
Sbjct: 841 AGRPKTITGFQTHSTPVLLAAGDRAELATEKYLPLSPILEGFVILKENPDYSEDH 895

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225446449\|ref\|XP_002277029.1\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 1A [Vitis vinifera] gi\|302143338\|emb\|CBI21899.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449453553\|ref\|XP_004144521.1\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 1A-like [Cucumis sativus] gi\|449522658\|ref\|XP_004168343.1\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 1A-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356542984\|ref\|XP_003539943.1\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 1A-like [Glycine max]	Back alignment and taxonomy information

>gi\|356517488\|ref\|XP_003527419.1\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 1A-like [Glycine max]	Back alignment and taxonomy information

>gi\|357474441\|ref\|XP_003607505.1\| 26S proteasome non-ATPase regulatory subunit [Medicago truncatula] gi\|355508560\|gb\|AES89702.1\| 26S proteasome non-ATPase regulatory subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi|18399399|ref|NP_565477.1| 26S proteasome regulatory subunit N1 [Arabidopsis thaliana] gi|75265911|sp|Q9SIV2.2|RPN1A_ARATH RecName: Full=26S proteasome non-ATPase regulatory subunit 2 1A; AltName: Full=26S proteasome regulatory subunit RPN1 A; Short=AtRPN1a; AltName: Full=26S proteasome regulatory subunit S2 1A gi|13430608|gb|AAK25926.1|AF360216_1 putative 26S proteasome regulatory subunit S2 [Arabidopsis thaliana] gi|14532874|gb|AAK64119.1| putative 26S proteasome regulatory subunit S2 [Arabidopsis thaliana] gi|20198043|gb|AAD21708.2| 26S proteasome regulatory subunit S2 (RPN1) [Arabidopsis thaliana] gi|32700010|gb|AAP86655.1| 26S proteasome subunit RPN1a [Arabidopsis thaliana] gi|330251938|gb|AEC07032.1| 26S proteasome regulatory subunit N1 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|224132892\|ref\|XP_002327906.1\| predicted protein [Populus trichocarpa] gi\|222837315\|gb\|EEE75694.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297832660\|ref\|XP_002884212.1\| AtRPN1a/RPN1A [Arabidopsis lyrata subsp. lyrata] gi\|297330052\|gb\|EFH60471.1\| AtRPN1a/RPN1A [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|297799128\|ref\|XP_002867448.1\| 26S proteasome subunit RPN1b [Arabidopsis lyrata subsp. lyrata] gi\|297313284\|gb\|EFH43707.1\| 26S proteasome subunit RPN1b [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		891
TAIR\|locus:2046016		891	RPN1A "26S proteasome regulato	0.997	0.997	0.771	0.0
TAIR\|locus:2121358		891	RPN1B "26S proteasome regulato	0.995	0.995	0.748	0.0
UNIPROTKB\|E2RCP9		908	PSMD2 "Uncharacterized protein	0.636	0.624	0.466	1.1e-222
RGD\|1305752		908	Psmd2 "proteasome (prosome, ma	0.636	0.624	0.464	1.7e-222
UNIPROTKB\|P56701		908	PSMD2 "26S proteasome non-ATPa	0.636	0.624	0.463	1.7e-222
UNIPROTKB\|Q13200		908	PSMD2 "26S proteasome non-ATPa	0.636	0.624	0.463	1.7e-222
UNIPROTKB\|I3LEW5		908	PSMD2 "Uncharacterized protein	0.636	0.624	0.463	1.7e-222
MGI\|MGI:1096584		908	Psmd2 "proteasome (prosome, ma	0.636	0.624	0.464	2.2e-222
UNIPROTKB\|Q5R9I6		908	PSMD2 "26S proteasome non-ATPa	0.636	0.624	0.461	2.2e-222
ZFIN\|ZDB-GENE-040426-1480		897	psmd2 "proteasome (prosome, ma	0.634	0.629	0.463	2.2e-220

TAIR\|locus:2046016 RPN1A "26S proteasome regulatory subunit S2 1A" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3499 (1236.8 bits), Expect = 0., P = 0.
 Identities = 688/892 (77%), Positives = 756/892 (84%)

Query:     1 MAP--DPNSASGSGTKDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQLELYVERVQDP 58
             MAP  DPNS  G   KDE                             Q LELYVERVQDP
Sbjct:     1 MAPTQDPNSVGGGAKKDEATLKVPSKDPKKKDEKKDEDLSEEDLELKQNLELYVERVQDP 60

Query:    59 DPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADIL 118
             +P LQK ALESMR EIR STSSMTSVPKPLKFLRPHYGTLKA++ETM DSDLKKY++DIL
Sbjct:    61 NPELQKAALESMRQEIRASTSSMTSVPKPLKFLRPHYGTLKAFHETMADSDLKKYLSDIL 120

Query:   119 SVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLM 178
             SVLALTMSA+GERESL++RL+G+EGDIGSWGHEYVRNLAGEIAQEY KRQ++EASIDDLM
Sbjct:   121 SVLALTMSADGERESLRFRLIGTEGDIGSWGHEYVRNLAGEIAQEYTKRQSEEASIDDLM 180

Query:   179 ELVQEIVAFHMKHNAEPXXXXXXXXXXXXXXXXXXXXATNFKRTCLYLTSAAKYLPGPDD 238
             ELVQ+IVAFHMKHNAE                      TNFKRTC YLTSAA+YLPGPDD
Sbjct:   181 ELVQQIVAFHMKHNAETEAVDLLMDVEDLDLLLEHVDKTNFKRTCNYLTSAARYLPGPDD 240

Query:   239 MLVLDIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITL 298
             MLVLDI+YMIY+KFEE+PNALQIALFLDN QYVKQ+FTSC DLL+KKQFCY++ARHGIT 
Sbjct:   241 MLVLDISYMIYMKFEEYPNALQIALFLDNTQYVKQVFTSCTDLLKKKQFCYMIARHGITF 300

Query:   299 ELXXXXXXXXXXRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAG 358
             EL          R ALQDIVNN KLSEGYLTLARDIEVME K+PEDIYKAHLLDGRAS+G
Sbjct:   301 ELDDEMVADDDDREALQDIVNNTKLSEGYLTLARDIEVMEAKTPEDIYKAHLLDGRASSG 360

Query:   359 ASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASL 418
             ASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSD+++G SSGNWLFKNKEHGK SAAASL
Sbjct:   361 ASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDSTTG-SSGNWLFKNKEHGKTSAAASL 419

Query:   419 GMILLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGRED 478
             GMI LWDVDSGL+Q+DKYFHS DN +IAGALLGVGIVNCGI+NDCDPALALL +Y+ +ED
Sbjct:   420 GMIQLWDVDSGLSQLDKYFHSNDNPIIAGALLGVGIVNCGIKNDCDPALALLGDYIDKED 479

Query:   479 ACIRIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEV 538
             + +RIGAIMGLGISYAG+QNDQIR+KLS ILNDAK+PLDVIAF+++SLG+IYVGSCNEEV
Sbjct:   480 SSVRIGAIMGLGISYAGSQNDQIRNKLSPILNDAKAPLDVIAFASLSLGMIYVGSCNEEV 539

Query:   539 AQAIIFALMDRSESELGEPXXXXXXXXXXXXXXXKQESVEATAEVSKTFNEKIRKYCDMT 598
             AQ+IIFALMDRSE+ELG+                KQESVEATAEVSKTFNEKIRKYCDMT
Sbjct:   540 AQSIIFALMDRSEAELGDALTRFLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMT 599

Query:   599 LLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEH 658
             LLSCAYAGTGNVLKVQ+LL  C +H EKG+ +QGPAVLG+AMVAM+EELG++M IRSLE 
Sbjct:   600 LLSCAYAGTGNVLKVQDLLAQCGEHLEKGDIHQGPAVLGLAMVAMSEELGVDMEIRSLER 659

Query:   659 LLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN 718
             +LQYGEQNIRRAVPLALGLLCISNPKV VMDTLSRLSHDTDSEVAM+A+ISLGLIG+GTN
Sbjct:   660 MLQYGEQNIRRAVPLALGLLCISNPKVTVMDTLSRLSHDTDSEVAMSAIISLGLIGAGTN 719

Query:   719 NARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIV 778
             NARIAGMLRNLSSYYYKD +LLFCVRIAQGLVHMGKGLLTL+P+HS+RFLLSPTALAGIV
Sbjct:   720 NARIAGMLRNLSSYYYKDMSLLFCVRIAQGLVHMGKGLLTLSPFHSERFLLSPTALAGIV 779

Query:   779 TTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSXXXXXXXXXXXXXXXX 838
             T L ACLDMK +I+GKYHYVLYFLVLAMQPRM+LTVDENLKPLS                
Sbjct:   780 TLLHACLDMKPIILGKYHYVLYFLVLAMQPRMMLTVDENLKPLSVPVRVGQAVDVVGQAG 839

Query:   839 XPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYRED 890
              PKTITGFQTHSTPVLLAAG+RAELAT+KYIPLSPILEGF+ILKENPDYRE+
Sbjct:   840 RPKTITGFQTHSTPVLLAAGERAELATDKYIPLSPILEGFIILKENPDYREE 891

GO:0000502 "proteasome complex" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=ISS;IDA

GO:0030234 "enzyme regulator activity" evidence=IEA

GO:0042176 "regulation of protein catabolic process" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS

GO:0030163 "protein catabolic process" evidence=TAS

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR\|locus:2121358 RPN1B "26S proteasome regulatory subunit S2 1B" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RCP9 PSMD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

RGD\|1305752 Psmd2 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|P56701 PSMD2 "26S proteasome non-ATPase regulatory subunit 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q13200 PSMD2 "26S proteasome non-ATPase regulatory subunit 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LEW5 PSMD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:1096584 Psmd2 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5R9I6 PSMD2 "26S proteasome non-ATPase regulatory subunit 2" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-1480 psmd2 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6XJG8	RPN1B_ARATH	No assigned EC number	0.8333	0.9955	0.9955	no	no
Q4FZT9	PSMD2_RAT	No assigned EC number	0.5280	0.9708	0.9526	yes	no
Q54BC6	PSMD2_DICDI	No assigned EC number	0.4883	0.9506	0.9484	yes	no
Q5R9I6	PSMD2_PONAB	No assigned EC number	0.5236	0.9741	0.9559	yes	no
P87048	RPN1_SCHPO	No assigned EC number	0.4798	0.9730	0.9730	yes	no
Q13200	PSMD2_HUMAN	No assigned EC number	0.5246	0.9741	0.9559	yes	no
P56701	PSMD2_BOVIN	No assigned EC number	0.5246	0.9764	0.9581	yes	no
Q9SIV2	RPN1A_ARATH	No assigned EC number	0.8609	0.9977	0.9977	yes	no
Q8VDM4	PSMD2_MOUSE	No assigned EC number	0.5280	0.9708	0.9526	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		891
COG5110		881	COG5110, RPN1, 26S proteasome regulatory complex c	0.0
COG5116		926	COG5116, RPN2, 26S proteasome regulatory complex c	1e-21

>gnl\|CDD\|227441 COG5110, RPN1, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

 Score =  854 bits (2208), Expect = 0.0
 Identities = 369/893 (41%), Positives = 546/893 (61%), Gaps = 28/893 (3%)

Query: 7   SASGSGTKDEASVKVPAK-DPKKKDDKKDE--DLSEEDLALKQQLELYVERVQDPDPGLQ 63
           S     T DE S   P K  P KKD KK+E   LSEED  LK  LEL VER+QDPD  LQ
Sbjct: 5   SDKKQQTIDEQSQISPEKQTPNKKDKKKEEEEQLSEEDAMLKGDLELLVERIQDPDIDLQ 64

Query: 64  KVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDLKKYMADILSVLAL 123
             +L  ++  I++STSSMT+VPKPLKFLRP+Y  L   Y+   + + K+++ADILS L +
Sbjct: 65  NNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWLADILSALCM 124

Query: 124 TMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEA-SIDDLMELVQ 182
             S  G+ +SL YRL G+  D+  WGHEYVR+LAGEIA+    +   +A S  D  +L  
Sbjct: 125 VYSENGKHKSLAYRLEGNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSFADTRDLGL 184

Query: 183 EIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVL 242
           EIV F +KHNAE +A+DLL+EV  ++ +++ VD  N+ R CLYL      LP P+D+ +L
Sbjct: 185 EIVPFFLKHNAEFDAIDLLVEVGGIEKVLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALL 244

Query: 243 DIAYMIYLKFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDD 302
           + A  IYLK  +   A+  A+ L   + + +   + +D   KKQ  YILAR  +  E  D
Sbjct: 245 ETALKIYLKMGDLTRAVVGAIRLQKSKEIIEYVRAIEDPDYKKQCLYILARQNLYYEASD 304

Query: 303 DMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAG-ASV 361
           +           +DI++N  LS+ +  L +++ + +PK PEDI K HL   + +   A +
Sbjct: 305 E---------EEKDILSNGYLSDHFRYLGKELNLDKPKVPEDILKGHLKYDKDTRQLAGI 355

Query: 362 DSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMI 421
            SA QNLA  FVN  +N G+  D L  +P D         W++K K  G +SA AS+G+I
Sbjct: 356 GSANQNLAMGFVNDPINLGYENDSL--IPLDD-------EWIYKCKVPGLISAFASIGVI 406

Query: 422 LLWDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACI 481
             W+ D GL  +DKY ++ +++  AGALLG+G+    +  +  PALALLS Y+    +  
Sbjct: 407 ESWNSDKGLETLDKYLYADESYRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKH 466

Query: 482 RIGAIMGLGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQA 541
            I AI+GLG +++GTQ +++   L  I+    SP++V+ F++++LG ++VG+CN ++   
Sbjct: 467 VIAAILGLGAAFSGTQAEEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSL 526

Query: 542 IIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLS 601
           I+   ++R + E      R + LGL  L+ G+++ V+   E        + K+ ++ +  
Sbjct: 527 ILQTFVERGKIESETQWFRFLALGLASLFYGRKDQVDDVEETIMAIEGALSKHEEILVKG 586

Query: 602 CAYAGTGNVLKVQNLLGHCAQ-----HHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSL 656
           C Y GTG+VL +Q+LL    +        +    +  A+LG A++AM E++G EM +R  
Sbjct: 587 CQYVGTGDVLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMVLRHF 646

Query: 657 EHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSG 716
            H + YG  +IR  +PLA G+L  SNP++NV DTL R SHD D  V +  + ++GLIG+G
Sbjct: 647 SHSMHYGSSHIRSVLPLAYGILSPSNPQMNVFDTLERSSHDGDLNVIINTIFAMGLIGAG 706

Query: 717 TNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAG 776
           T NAR+A +LR L+SYYYK++  LF +RIAQGL+ +GKG +T++P + D+  L P   AG
Sbjct: 707 TLNARLAQLLRQLASYYYKESKALFVLRIAQGLLSLGKGTMTISPLYFDKTTLMPKNTAG 766

Query: 777 IVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQ 836
           + TT+F  LD     +   H ++YFL+  ++P+  +T+ E  +P+ V VRVGQAV+ VGQ
Sbjct: 767 LFTTVFMLLDSSIFPLVSSHALMYFLLCQIRPQKYVTLSEKGEPIKVNVRVGQAVNTVGQ 826

Query: 837 AGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYRE 889
           AGRPK ITG+QTH+TPVLL+  +RAEL T++Y   +  +EG VILK+NPDYRE
Sbjct: 827 AGRPKKITGWQTHTTPVLLSHKERAELDTDEYNVCTSYIEGVVILKKNPDYRE 879

Length = 881

>gnl\|CDD\|227446 COG5116, RPN2, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		891
KOG2005		878	consensus 26S proteasome regulatory complex, subun	100.0
COG5110		881	RPN1 26S proteasome regulatory complex component [	100.0
KOG2062		929	consensus 26S proteasome regulatory complex, subun	100.0
COG5116		926	RPN2 26S proteasome regulatory complex component [	100.0
KOG2062		929	consensus 26S proteasome regulatory complex, subun	100.0
COG5116		926	RPN2 26S proteasome regulatory complex component [	100.0
KOG2005		878	consensus 26S proteasome regulatory complex, subun	100.0
COG5110		881	RPN1 26S proteasome regulatory complex component [	100.0
KOG1858		1496	consensus Anaphase-promoting complex (APC), subuni	99.97
PRK09687		280	putative lyase; Provisional	99.23
KOG1858		1496	consensus Anaphase-promoting complex (APC), subuni	99.17
PRK09687		280	putative lyase; Provisional	99.14
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.08
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	98.77
COG1413		335	FOG: HEAT repeat [Energy production and conversion	98.18
TIGR02270		410	conserved hypothetical protein. Members are found	98.1
TIGR02270		410	conserved hypothetical protein. Members are found	98.07
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.98
PF01851		35	PC_rep: Proteasome/cyclosome repeat; InterPro: IPR	97.73
PF01851		35	PC_rep: Proteasome/cyclosome repeat; InterPro: IPR	97.67
COG1413		335	FOG: HEAT repeat [Energy production and conversion	97.64
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.63
KOG0567		289	consensus HEAT repeat-containing protein [General	97.62
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.5
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	96.9
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	96.88
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.77
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.75
PTZ00429		746	beta-adaptin; Provisional	96.72
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	96.5
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.46
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.43
PRK11788		389	tetratricopeptide repeat protein; Provisional	96.03
KOG0567		289	consensus HEAT repeat-containing protein [General	95.98
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.58
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	95.53
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.48
PTZ00429		746	beta-adaptin; Provisional	95.3
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	94.44
KOG1824		1233	consensus TATA-binding protein-interacting protein	94.08
PRK11788		389	tetratricopeptide repeat protein; Provisional	93.92
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	93.67
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	93.48
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	93.12
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	92.65
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	91.87
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	90.66
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	90.11
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	89.96
COG5096		757	Vesicle coat complex, various subunits [Intracellu	89.76
PF05004		309	IFRD: Interferon-related developmental regulator (	89.76
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	89.38
KOG1824		1233	consensus TATA-binding protein-interacting protein	89.25
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	89.22
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	89.16
PRK12370		553	invasion protein regulator; Provisional	89.08
cd05804		355	StaR_like StaR_like; a well-conserved protein foun	88.84
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	88.03
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	87.4
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	87.07
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	86.95
KOG2259		823	consensus Uncharacterized conserved protein [Funct	86.92
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	86.33
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	86.01
COG5096		757	Vesicle coat complex, various subunits [Intracellu	85.32
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	85.12
PRK12370		553	invasion protein regulator; Provisional	83.73
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	83.51
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	82.25
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	81.62
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	81.61
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	81.43
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	81.2
COG3118		304	Thioredoxin domain-containing protein [Posttransla	80.53
PRK11447		1157	cellulose synthase subunit BcsC; Provisional	80.32

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=1.1e-239  Score=1975.35  Aligned_cols=851  Identities=65%  Similarity=1.019  Sum_probs=823.4

Q ss_pred             CCCCCCCCccccCCCHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhhhccccccCCCccchhhhhHHHHHHHHh
Q 002696           24 KDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYE  103 (891)
Q Consensus        24 ~~~~~~~~~~~~~lseed~~~k~~l~~~v~~l~e~d~~l~~~aL~~L~~~i~~~tss~tsvpkplk~l~~~~~~l~~~ye  103 (891)
                      ++.++|+++|+|+|||||+|||++||++|+|++|+|++|+++||++|+++||+|||||||||||||||||||++|+++|+
T Consensus        26 k~~~~k~~~k~e~lSEED~~lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~  105 (878)
T KOG2005|consen   26 KKNKKKDKDKEEDLSEEDLQLKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYE  105 (878)
T ss_pred             cccccccchhhhhccHHHHHhhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHH
Confidence            33445666677999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHhhhccCcccccchhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 002696          104 TMPDSDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTDEASIDDLMELVQE  183 (891)
Q Consensus       104 ~~~~~~~k~~~AdilS~l~~t~~~~~~~~~L~y~L~~~~~d~~~wghEYvr~l~~ei~~~y~~~~~~~~~~~~L~~lv~~  183 (891)
                      +|.+++.|+++|||+|||+|||+  +..+.|+|||.|+..|+++|||||||||++||.++|+++....+.+++|..|+.+
T Consensus       106 ~~~~~n~Kk~laDIlSvLamt~s--e~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~  183 (878)
T KOG2005|consen  106 SMADSNLKKWLADILSVLAMTMS--ERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQE  183 (878)
T ss_pred             hccCchhHhHHHHHHHHHheeec--ccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH
Confidence            99999999999999999999998  4457799999999999999999999999999999999965555668999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHhcCChhhhHHHhhccChHHHHHHHHhhcccCCCCChHHHHHHHHHHHHccCCHHHHHHHHH
Q 002696          184 IVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLKFEEFPNALQIAL  263 (891)
Q Consensus       184 iv~~~l~~n~e~eAvdlalE~~~ld~i~~~vd~~~~~rv~~Yl~~~~~~~~~p~~~~vl~~~~~iy~~~~~~~~al~~al  263 (891)
                      ||+||||||+|.||||+++|+++||++.+|||++||+|+|+|+.+|++|+|+|+|..++++++.||+|+++|++|+++||
T Consensus       184 iV~f~mkHNAE~eAiDlL~Eve~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai  263 (878)
T KOG2005|consen  184 IVPFHMKHNAEFEAIDLLMEVEGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAI  263 (878)
T ss_pred             HHHHHHhccchhHHHHHHHHhhhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCChHHHHHHHHhcchhHHHHHHHHHHHhhcccccccCCCCCCcccHHHHHHHHcccCcchhHHHHHHHhhccCCCChH
Q 002696          264 FLDNMQYVKQIFTSCDDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSEGYLTLARDIEVMEPKSPE  343 (891)
Q Consensus       264 ~l~d~~~i~~i~~~~~d~~~~~Qlaf~larq~~~~~~~~~~~~~~~~~~~l~~il~n~~l~~~~~~~~~~l~i~~~k~~e  343 (891)
                      +++|.+.|+++|.+|+|+.++||+||+||||++.+++.+        ++++++|++|.+++++|+++++|+++++||+||
T Consensus       264 ~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~--------~e~l~di~sN~~Lse~f~~LarELeimepk~pe  335 (878)
T KOG2005|consen  264 RLDDMKEVKEVFTSCTDPLLKKQMAYMLARHGIYFELSE--------DEELQDILSNGKLSEHFLYLARELEIMEPKVPE  335 (878)
T ss_pred             hcCcHHHHHHHHHhccCHHHHHHHHHHHHhcCCceecCc--------CHHHHHHHccccHHHHHHHHHHHhcccCCCChH
Confidence            999999999999999999999999999999999998743        378999999999999999999999999999999


Q ss_pred             HHHHhhhccCCCCcccchHHHHHhHHHHHHHHHHhcccCCccccccCCCCCCCCCCCccccccchhhHHHHHHHhccccc
Q 002696          344 DIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILL  423 (891)
Q Consensus       344 ~iyK~~l~~~r~~~~~~~dsa~~~la~~~~na~vnaG~~~D~~l~~~~~~~~~~~~~~wl~k~~~~~k~sA~aslGlI~~  423 (891)
                      +|||+|++++|...+.++||||||+|++|||||||+|||+||+|.++.+     +..+|+|||+++++.+|+||+|+|.+
T Consensus       336 dIyK~hl~~~r~~s~a~vdSarqnla~~fvNgFVn~Gyg~Dkl~~~~~~-----s~~~w~yknke~g~~sa~aS~G~I~~  410 (878)
T KOG2005|consen  336 DIYKSHLEDSRGGSGAGVDSARQNLAATFVNGFVNAGYGQDKLMLVQEG-----SRVNWLYKNKEHGMTSAAASLGMIQL  410 (878)
T ss_pred             HHHHHHHhccccccccCccHHHHHHHHHHHHHHhhcccCCCceeccCcc-----ccCcceeeccccCchHhhhhcchhhe
Confidence            9999999988866678999999999999999999999999999998763     46679999999999999999999999


Q ss_pred             ccchhhHHhHhhhhcCCCchhHHHHHHHHHHhhcCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHHHHHhccCCCHHHHH
Q 002696          424 WDVDSGLAQIDKYFHSTDNHVIAGALLGVGIVNCGIRNDCDPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRH  503 (891)
Q Consensus       424 ~~~~~~l~~l~~yL~s~~~~~k~GAllaLGli~~G~~~e~d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~~~v~e  503 (891)
                      ||+|.|++++++|++++++|+|+|||+|+|++++|+++||||++++|++|+.+++..+|+||++|||++|+||++++|..
T Consensus       411 Wnvd~gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~  490 (878)
T KOG2005|consen  411 WNVDKGLEQLDKYLYSDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLE  490 (878)
T ss_pred             ecchhhHHHHHHHhhcCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHhhcCccccCchhHHHHHHHHHhhhcCChhhHHHHHHH
Q 002696          504 KLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAEV  583 (891)
Q Consensus       504 ~L~~~L~d~~~~~e~~~~AaLaLGLi~lGs~n~~~~e~ll~~L~~~~~t~l~e~~~r~~~lglgLl~lG~~e~~~~li~~  583 (891)
                      .|.|++.|++.++|+.++|+|+||+||+||||++++..|++++|+++++++.+.|.||+++|+|++|+|++|.+|++.+.
T Consensus       491 lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~  570 (878)
T KOG2005|consen  491 LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVET  570 (878)
T ss_pred             HHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            99999999888999999999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             HhhchhhhhhhhhHHHHHHHHhcCCCHHHH--HHHHhhhhccCCCCccchhHHHHHhHHhhhcchhhHHHHHHHHHHHhh
Q 002696          584 SKTFNEKIRKYCDMTLLSCAYAGTGNVLKV--QNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQ  661 (891)
Q Consensus       584 L~~~~~~i~r~~~~~~~glAyaGTGn~~~i--q~LL~~~~~~~~d~~~vrr~avlglglI~~~~~~g~e~~~~~l~~L~~  661 (891)
                      ++.+++|+.++..+++.+|||+||||+.+|  |.++|+|.++..+.+..+..||+|+|+|+||+++|++|+.|+|+|+++
T Consensus       571 ~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~  650 (878)
T KOG2005|consen  571 IKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLH  650 (878)
T ss_pred             HHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence            999999999999999999999999999999  889999999987655667799999999999999999999999999999


Q ss_pred             cCChhHHhHHHHHhhhhccCCCcHHHHHHHHHhhcCCchHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhhhccChhhHH
Q 002696          662 YGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLF  741 (891)
Q Consensus       662 ~~np~VR~ga~lALGL~~aGt~~~~aid~L~~l~~D~d~~Vr~~AiiALGlV~aGtnn~rv~~~Lr~l~~~~~~d~~~~f  741 (891)
                      |++|+||+++|+|||++|+|||+.+++|+|++++||.|.+|..+||||||+|||||||+|++++||||+|||+||++++|
T Consensus       651 yge~~iRravPLal~llsvSNPq~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~mLrqlaSYyyKd~~~Lf  730 (878)
T KOG2005|consen  651 YGEPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQMLRQLASYYYKDSKALF  730 (878)
T ss_pred             cCCHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHHHHHHHHHHHhccchhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhcCCCceeecccCCCCCCCChHHHHHHHHHHHhhccccccccCchhHHHHHHhhhcccceeeeecCCCCcc
Q 002696          742 CVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPL  821 (891)
Q Consensus       742 ~~~iAqGll~~G~G~~tlsp~~sd~~~~~~~a~agLl~~l~~~~~~~~~i~~~~h~l~~~l~lA~~Pr~li~ld~~l~~~  821 (891)
                      .+||||||+|+|||++|++|+|+||++++|+|+|||++++++++|++.+++.++||++|||++||+|||++|+|++++|+
T Consensus       731 ~vriAQGL~hlGKGtltl~p~~~dr~ll~p~alagl~t~~~~~LD~~i~l~~~~H~~ly~Lv~amqprm~~T~~e~~~pl  810 (878)
T KOG2005|consen  731 VVRIAQGLVHLGKGTLTLSPFHSDRQLLMPTALAGLLTTVFALLDANIILLVKSHYLLYFLVLAMQPRMLVTVDEELEPL  810 (878)
T ss_pred             HHHHHHHHHHhcCCceecccccchhhhhchHHHHHHHHHHHHHhccchhccchHHHHHHHHHHhhCceEEEeecccCccc
Confidence            99999999999999999999999999999999999999999999999666668999999999999999999999999999


Q ss_pred             eeeeeecccccccccCCCcceeeceeeeecceeccCCCceeeccCCccccCCcccceEEeecCCCCCC
Q 002696          822 SVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYRE  889 (891)
Q Consensus       822 ~v~vrvg~~vd~vg~ag~pk~itg~qt~~tpvll~~~erael~~~~~~~~~~~leg~vi~~~n~~~~~  889 (891)
                      +|+|||||||||||||||||||||||||||||||.+||||||+||+|+|+||.|||||||||||||.+
T Consensus       811 ~V~VRVGqaVdvVGqaGrPKtITg~qTHtTPVlLahgeRAElatd~y~p~t~~lEg~vILkkNp~y~~  878 (878)
T KOG2005|consen  811 PVNVRVGQAVDVVGQAGRPKTITGFQTHTTPVLLAHGERAELATDEYLPLTSHLEGVVILKKNPDYIE  878 (878)
T ss_pred             cceeeccchhhhhhccCCCceecceeccCcceecccchhhhhccccccccccccceEEEEecCCcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999974

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) []	Back alignment and domain information

>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) []	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK11447 cellulose synthase subunit BcsC; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		891
4b4t_N		945	Near-Atomic Resolution Structural Model Of The Yeas		4e-12
4ady_A		963	Crystal Structure Of 26s Proteasome Subunit Rpn2 Le		3e-08

>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 945

Back alignment and structure

Iteration: 1

Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 97/425 (22%), Positives = 183/425 (43%), Gaps = 36/425 (8%) Query: 369 AATFVNAFVNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDS 428 A + N F++AG +D S ++ WL K + K +A ASLG+I ++ Sbjct: 331 AVSVANGFMHAG---------TTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLE 381 Query: 429 GLAQIDKYF---HSTDNHVIAGALLGVGIVNCGIRNDCDPALALL----SEYVGREDACI 481 G + Y ++ + G+L G+G++ G D L + S G ED + Sbjct: 382 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDV 441 Query: 482 RI-GAIMGLGISYAGTQNDQIRHKLSTIL-NDAKSPLDVIAFSAISLGLIYVGSCNEEVA 539 + GA +G+G++ G+ N ++ L +L ND+ + + +A+ +GL +G+ E Sbjct: 442 LLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEA---AALGMGLCMLGTGKPEA- 497 Query: 540 QAIIFALMDRSESELGEPXXXXXXXXXXXXXXXKQESVEATAEVSKTFNEKIRKYCDMTL 599 I + S+ +QE + +E + +Y Sbjct: 498 ---IHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFT 554 Query: 600 LSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHL 659 ++ AYAGTGN V+ LL H A + + AV+ + V + + + R ++ L Sbjct: 555 IALAYAGTGNNSAVKRLL-HVAVSDSNDDVRRA-AVIALGFVLLRDYTTVP---RIVQLL 609 Query: 660 LQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLI---GSG 716 + ++R ALG+ C + +D L L+ D V AA+I+L +I + Sbjct: 610 SKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE 669 Query: 717 TNNARIAGMLRNLSSYY---YKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTA 773 N ++A + +N S +++ F +AQG+++ G +T+ ++D L + Sbjct: 670 KLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKS 729 Query: 774 LAGIV 778 + G+V Sbjct: 730 VVGLV 734

PyMOL of 4b4t

>pdb|4ADY|A Chain A, Crystal Structure Of 26s Proteasome Subunit Rpn2 Length = 963

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		891
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	2e-05
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	6e-05
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	2e-04

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963	Back alignment and structure

 Score =  585 bits (1509), Expect = 0.0
 Identities = 140/819 (17%), Positives = 311/819 (37%), Gaps = 107/819 (13%)

Query: 51  YVERVQDPDPGLQKVALESMRTEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMPDSDL 110
            +  +++    ++  ALES+   +    S +++              ++A Y+    SD 
Sbjct: 20  LLALLRENQDSVKTYALESINNVVDQLWSEISN----------ELPDIEALYDDDTFSD- 68

Query: 111 KKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQTD 170
           ++  A I S +    +      ++KY L   +        ++V  +  +  + Y +  + 
Sbjct: 69  REMAALIASKV--YYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASK 126

Query: 171 EASIDD-----------LMELVQEIVAFHMKHNAEPEAVDLLMEVEDLDLL-------VE 212
           + + D+           L  + + ++   +K +    A+ + +E   LD++       ++
Sbjct: 127 QYTKDEQFYTKDIIDPKLTSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLD 186

Query: 213 HVDATNFKRTCLYLTSAAKYLPGPDD--MLVLDIAYMIYLKFE--EFPNALQIALFLDNM 268
               +   +   YL + A            +L  ++   +     ++    ++ + L++ 
Sbjct: 187 QDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNLNDA 246

Query: 269 QYVKQIFTSC---DDLLRKKQFCYILARHGITLELDDDMVPDDDDRYALQDIVNNVKLSE 325
               Q+F      +D     Q  + L                      L +I+     ++
Sbjct: 247 GLALQLFKKLKEENDEGLSAQIAFDLVSSA---------------SQQLLEILVTELTAQ 291

Query: 326 GYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNL---------AATFVNAF 376
           GY     +I  +      D Y   LL+ +      ++ ++ +L         A +  N F
Sbjct: 292 GYDPALLNI--LSGLPTCDYYNTFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGF 349

Query: 377 VNAGFGQDKLMTVPSDASSGGSSGNWLFKNKEHGKMSAAASLGMILLWDVDSGLAQIDKY 436
           ++AG   +  +          ++  WL K +   K +A ASLG+I   ++  G   +  Y
Sbjct: 350 MHAGTTDNSFIK---------ANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPY 400

Query: 437 F---HSTDNHVIAGALLGVGIVNCGIRNDCDPALALL-----SEYVGREDACIRIGAIMG 488
                ++   +  G+L G+G++  G   D    L  +           +   +  GA +G
Sbjct: 401 LPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460

Query: 489 LGISYAGTQNDQIRHKLSTILNDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMD 548
           +G++  G+ N ++   L  +L +  +     A  A+ +GL  +G+   E    +     +
Sbjct: 461 IGLAAMGSANIEVYEALKEVLYNDSATSGEAA--ALGMGLCMLGTGKPEAIHDMFTYSQE 518

Query: 549 RSESELGEPLTRLIPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTG 608
                    +TR + +GL L+  G+QE  +         +E + +Y     ++ AYAGTG
Sbjct: 519 TQH----GNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTG 574

Query: 609 NVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIR 668
           N   V+ LL          +  +  AV+ +  V + +        R ++ L +    ++R
Sbjct: 575 NNSAVKRLLHVAVSDSN--DDVRRAAVIALGFVLLRDY---TTVPRIVQLLSKSHNAHVR 629

Query: 669 RAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTN---NARIAGM 725
                ALG+ C      + +D L  L+ D    V  AA+I+L +I        N ++A +
Sbjct: 630 CGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADI 689

Query: 726 LRNLSSYY---YKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLF 782
            +N  S     +++    F   +AQG+++ G   +T+   ++D   L   ++ G+V    
Sbjct: 690 NKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKSVVGLVMFSQ 749

Query: 783 ACLDMKAVIVGKYHYVLYFLVLAMQPRMLLTVDENLKPL 821
                       +  + +FL L+  P  ++ +  + + +
Sbjct: 750 F---------WYWFPLAHFLSLSFTPTTVIGIRGSDQAI 779

PyMOL of 4ady

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		891
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.1
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	99.0
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	98.98
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.96
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	98.34
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	98.29
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.02
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.95
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.7
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.61
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.55
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.54
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.46
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.2
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	96.79
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	96.37
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.24
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	96.15
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	94.69
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	94.55
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	92.6
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	90.85
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	88.23
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	85.43
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	83.62
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	82.67

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=8.6e-08  Score=67.16  Aligned_cols=279  Identities=13%  Similarity=0.103  Sum_probs=136.6

Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             8542038990368999999977516988991------3599999852089887999999999989852598877999999
Q 002696          433 IDKYFHSTDNHVIAGALLGVGIVNCGIRNDC------DPALALLSEYVGREDACIRIGAIMGLGISYAGTQNDQIRHKLS  506 (891)
Q Consensus       433 l~~yL~s~~~~ik~GAllaLGli~~g~~~e~------d~~l~lL~~~L~~~~~~v~~gA~lGLGlay~Gs~~e~i~e~L~  506 (891)
                      +...+.+.+..+|..|+.+++-+......+.      +.++..+...+.+.+..+|..++..++......+++...+.+.
T Consensus       286 l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~  365 (588)
T d1b3ua_         286 FQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL  365 (588)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             99987213357779999879999998766554332199998888876138876789999998865543013167888888


Q ss_pred             HHH----CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             871----3899806888899999654422799999999999999604843348414777788988642489224999999
Q 002696          507 TIL----NDAKSPLDVIAFSAISLGLIYVGSCNEEVAQAIIFALMDRSESELGEPLTRLIPLGLGLLYLGKQESVEATAE  582 (891)
Q Consensus       507 ~~L----~d~~~~~e~~~~AaLaLGLi~lGs~n~e~~e~ll~~L~~~~~~~l~e~~~r~~~lglgLl~lG~~e~~~~~l~  582 (891)
                      |.+    .|+  ..++...+.-+++-+.--.+.....+.++..+....                                
T Consensus       366 p~l~~~l~d~--~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~--------------------------------  411 (588)
T d1b3ua_         366 PLFLAQLKDE--CPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELA--------------------------------  411 (588)
T ss_dssp             HHHHHHHTCS--CHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHH--------------------------------
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--------------------------------
T ss_conf             8899998751--022226778888888750031344367789999998--------------------------------


Q ss_pred             HHHHCHHHHHHHHHHHHHHHH--HHCCCC--HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH--CCHHHHHHHHHHH
Q ss_conf             974101323435568999988--724787--9999999953001578895221277878677630--2312287999999
Q 002696          583 VSKTFNEKIRKYCDMTLLSCA--YAGTGN--VLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAM--AEELGLEMAIRSL  656 (891)
Q Consensus       583 ~L~~~~~p~~r~~~~~~~glA--yaGTGn--~~~iq~LL~~~~~~~~d~~~vrr~avl~lglI~~--~~~~g~e~~~~~l  656 (891)
                         ...++-.|.+.+-.++..  ..|...  .....-++... .|...  .||..|+-+++-+.-  |.+.....+...+
T Consensus       412 ---~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~D~~~--~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l  485 (588)
T d1b3ua_         412 ---EDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL-VDHVY--AIREAATSNLKKLVEKFGKEWAHATIIPKV  485 (588)
T ss_dssp             ---TCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGG-GCSSH--HHHHHHHHHHHHHHHHHCHHHHHHHTHHHH
T ss_pred             ---HCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC-CCCCH--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             ---433588999999999999977184767788888877635-68741--689999999999999839387899999999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q ss_conf             9996209946884899996311268982----77999998742298458999999999987079990----689999998
Q 002696          657 EHLLQYGEQNIRRAVPLALGLLCISNPK----VNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNN----ARIAGMLRN  728 (891)
Q Consensus       657 ~~L~~~~~~~VR~gv~lALGl~~agt~~----~~vid~L~~l~~D~d~~Vr~~AiiALGlV~agtnn----~ri~~~lr~  728 (891)
                      ..+..+.++.+|.+++.+++.+...-+.    ..++..|.++.+|++..||.+|+-+++.++.--++    .++...++.
T Consensus       486 ~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~  565 (588)
T d1b3ua_         486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK  565 (588)
T ss_dssp             HHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             99865998789999999999999986968789999999998859998799999999999999870807579999999999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf             6522014725699999997655308
Q 002696          729 LSSYYYKDANLLFCVRIAQGLVHMG  753 (891)
Q Consensus       729 l~~~~~~d~~~~f~~~lAqGll~~G  753 (891)
                      +..  ..|..+++.+.-|...+-+|
T Consensus       566 L~~--D~d~dVr~~A~~al~~l~~~  588 (588)
T d1b3ua_         566 LTQ--DQDVDVKYFAQEALTVLSLA  588 (588)
T ss_dssp             HTT--CSSHHHHHHHHHHHHHTTCC
T ss_pred             HCC--CCCHHHHHHHHHHHHHHHCC
T ss_conf             757--99877999999999987449

PyMOL of d1b3ua_

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure