Citrus Sinensis ID: 002710

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890
MENEEELKEPEKKKPHLNLNSHSHSHSHSLSPTMARNTPSSPSSNKSVDSAVLQYQNQKLVQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGVRAGGGSNVLQKLDSENQTRDSIPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAETMAELEESRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKMEEAIQDSGRKDIKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI
cccccccccccccccccccccccccccccccccccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccHHHHHccccccccccHHHHHHHHHHcHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccEEEEEcccEccHHHHHHHHHHHHHHcccccccccccccEEEcc
meneeelkepekkkphlnlnshshshshslsptmarntpsspssnksvDSAVLQYQNQKLVQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLgvragggsnvlqkldsenqtrdsipsgppeDMFLCRLLQVnsiessskDGILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAETMAELEESRRKLVSLKMQKDIASGTHSLVPAaamvngsvspekrpadgrmdlQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNelnddkyvhsSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEINVRAESadaarntvddsESRIERLEVQLQKSIIEKNDLGLKMEEAIQDSGRKDIKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMygqegrdprdlmeIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAIlkcgvcfdrpkevviTKCFHLFcnpciqrnleirhrkcpgcgtafgqsdvrfvki
meneeelkepekkkphlnlNSHSHSHSHSLSPTMARNTPSSPSSNKSVDSAVLQYQNQKLVQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGVRAGGGSnvlqkldsenqtrdsipsgPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAfheklsaedAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAETMAELEESRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALtdsllidrslvlrrekeinvraesadaarntvddsesriERLEVQLQksiiekndlglkMEEAIqdsgrkdikAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLkvslsaktneqkrltdkCVEQMAEIKSLKALIEKLQKDKLESQIMLDmygqegrdprDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAkldaserdVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWlksavtssdkeyeqiqrktedmRKELENERNERKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPgcgtafgqsdvrfvki
MeneeelkepekkkphlnlnshshshshslsPTMARNTPsspssnksvdsAVLQYQNQKLVQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGVRAGGGSNVLQKLDSENQTRDSIPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAETMAELEESRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKMEEAIQDSGRKDIKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDmrkelenernerkkleeelmeVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI
***************************************************************************************YDEMLITVNQLWNLFVDDLILLGVRAGGGS***********************MFLCRLLQVNSI*****DGILQYVEEAL*******RELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMK*EAKNLHEVMEIIHLKHKEYADQIENYISS*************************************************************************************************************DKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRRE***************************************************************************************************************************IKSLKALI**************************************************************************EAEIIELVAK******************************************************DLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLK********************************************************IQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDV*****
***********************************************************************************************NQLWNLFV***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI
**************************************************AVLQYQNQKLVQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGVRAGGGSNVLQKLD*********PSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAETMAELEESRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEINVR***************SRIERLEVQLQKSIIEKNDLGLKMEEAIQDSGRKDIKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSA**************TEDMRKELENERNERKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI
*********************************************KSVDSAVLQYQNQKLVQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGVRAGG****************SIPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLAETMAELEESRRKLVSLKMQKDIAS***************************DLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKMEEAIQDSGRKDIKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MENEEELKEPEKKKPHLNLNSHSHSHSHSLSPTMARNTPSSPSSNKSVDSAVLQYQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLITVNQLWNLFVDDLILLGVRAGGGSNVLQKLDSENQTRDSIPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAExxxxxxxxxxxxxxxxxxxxxxxxKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSVEEAKILAADRLSExxxxxxxxxxxxxxxxxxxxxLNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEINVRAESxxxxxxxxxxxxxxxxxxxxxxxxxxxxKNDLGLKMEEAIQDSGRKDIKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKxxxxxxxxxxxxxxxxxxxxxKLESQIMLDMYGQEGRDPRDLMExxxxxxxxxxxxxxxxxxxxxHSLELRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSExxxxxxxxxxxxxxxxxxxxxxxxxxxxMKACLTEALRYNSEDRHLAVNxxxxxxxxxxxxxxxxxxxxxVTSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGEAAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query890 2.2.26 [Sep-21-2011]
Q9C895900 E3 ubiquitin-protein liga yes no 0.982 0.971 0.596 0.0
Q336R3844 E3 ubiquitin-protein liga yes no 0.943 0.995 0.544 0.0
A2ZAC2844 E3 ubiquitin-protein liga N/A no 0.943 0.995 0.544 0.0
Q8RXD6878 E3 ubiquitin-protein liga no no 0.967 0.980 0.332 1e-117
A2XW69884 E3 ubiquitin-protein liga N/A no 0.962 0.969 0.342 1e-111
Q7XU27884 E3 ubiquitin-protein liga no no 0.962 0.969 0.341 1e-111
Q4R7K71001 E3 ubiquitin-protein liga N/A no 0.368 0.327 0.315 2e-37
Q8CJB91002 E3 ubiquitin-protein liga yes no 0.368 0.327 0.315 4e-37
Q3U3191001 E3 ubiquitin-protein liga yes no 0.368 0.327 0.318 5e-37
O751501001 E3 ubiquitin-protein liga yes no 0.368 0.327 0.315 6e-37
>sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana GN=HUB2 PE=1 SV=2 Back     alignment and function desciption
 Score = 1037 bits (2681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/916 (59%), Positives = 696/916 (75%), Gaps = 42/916 (4%)

Query: 1   MENEEELKEPEKKKPHLNLNSHSHSHSHSLSP-TMARNT-PSSPSSNK------------ 46
           MEN+E   EP +KKPHL           S+SP +MARN+ PS P +              
Sbjct: 1   MENQES-DEPMQKKPHL---------LDSVSPNSMARNSSPSHPIAKSVSFFDCDFSLLC 50

Query: 47  --------SVDSAVLQYQNQKLVQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQL 98
                    VD+ VLQ QNQKLVQQLD QK +L  +E+KI+ELQ  QTSYD+ LI+VNQL
Sbjct: 51  LRLVDYEIDVDATVLQLQNQKLVQQLDLQKKQLYDVESKIQELQLNQTSYDDELISVNQL 110

Query: 99  WNLFVDDLILLGVRAGGGSNVLQKLDSENQTRDSIPSGPPEDMFLCRLLQVNSIESSSKD 158
           WN  VDDLILLGVRAG     L  LD  ++ R  +P    ++ FLCRLLQV+S+++S  D
Sbjct: 111 WNQLVDDLILLGVRAGANQEALNYLDIVDKKR--VPPCAADETFLCRLLQVDSLDTSKSD 168

Query: 159 GILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDD 218
            +++ VEEALA RHSS  ELM   E  ID Q+ K +SI+++ H   S EDA IQLS I+D
Sbjct: 169 EVVRKVEEALALRHSSTMELMGLFENTIDTQKTKAESISQSLHAVKSTEDATIQLSSIND 228

Query: 219 MMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHLA----ETMAELEESRR 274
           +MKEE+KNL E+++ +H++HKE+++QI+ YISSHS DQ+E++HL     E  AELEE+RR
Sbjct: 229 LMKEESKNLREMIDALHVRHKEHSEQIQAYISSHSTDQSELKHLKGQLEEIKAELEENRR 288

Query: 275 KLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSVEEAKILAADRL 334
           KL++LKMQKD A   H   PA A  NGS+SPEK P D +  L+ELKDS++E KI+A  RL
Sbjct: 289 KLITLKMQKDAACEGHVTSPAIA--NGSLSPEK-PVD-KTKLRELKDSIDEIKIMAEGRL 344

Query: 335 SEVEEAQQDNINLSKQLENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSL 394
           SE++ +Q+ N++LS+Q ++++NEL DD+Y++SSRLY+L+ND++ HWN E++RYK LT+++
Sbjct: 345 SELQASQEYNLSLSRQCQDIENELKDDQYIYSSRLYSLINDRIHHWNAELDRYKILTEAI 404

Query: 395 LIDRSLVLRREKEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKMEEAI 454
             +RS V+RR+KE+N+RAES +AA +      SRIE LE +LQ  IIEKN L L+ EEAI
Sbjct: 405 QAERSFVMRRDKELNLRAESLEAANHKTTTVGSRIEVLEKKLQSCIIEKNGLELETEEAI 464

Query: 455 QDSGRKDIKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKVSLSAKTNE 514
           QDS R+DIK+EF  MAS LSKEM MMEAQL RWK+TA +AL LRE+A SL+VSLS K +E
Sbjct: 465 QDSERQDIKSEFIAMASTLSKEMEMMEAQLKRWKDTAQDALYLREQAQSLRVSLSNKADE 524

Query: 515 QKRLTDKCVEQMAEIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAH 574
           QK L DKC +QMAEIKSLKALIEKL K+KL+ Q +  +  +E  D R L EIK+S+R+A 
Sbjct: 525 QKGLEDKCAKQMAEIKSLKALIEKLLKEKLQLQNLASICTRECNDDRGLAEIKDSQRKAQ 584

Query: 575 SQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEA 634
           +QAE LKN LDEH LELRVKAA+E E+ACQ+RL+ A+AEI EL  +LD SER+V+EL+E 
Sbjct: 585 AQAEELKNVLDEHFLELRVKAAHETESACQERLATAKAEIAELRTQLDLSEREVLELKEG 644

Query: 635 MKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFL 694
           +K K++EAEA IAEMETIGQA+EDMQTQNQHLLQQVAERDD NIKLVSESVKTK   +  
Sbjct: 645 IKVKEQEAEASIAEMETIGQAYEDMQTQNQHLLQQVAERDDYNIKLVSESVKTKHAYNTH 704

Query: 695 LSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWEL 754
           LSEKQ + +QL Q+NA VE+ K RI H EEQMK C +EA +   EDRHL ++LETTKWE+
Sbjct: 705 LSEKQVMEKQLHQVNASVENFKARIAHNEEQMKGCFSEAYKLIQEDRHLVISLETTKWEV 764

Query: 755 ADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELT 814
           ADA+KE +WLKSAV+SS+KEYEQI R+T+D++ EL++ER E+KKLEEELME+N ++ EL 
Sbjct: 765 ADADKEFRWLKSAVSSSEKEYEQISRRTDDIKLELDDERREKKKLEEELMELNKELEELG 824

Query: 815 SETGEAAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCP 874
           SE+ EAAI +LQ+E+K+CK ILKCGVCFDRPKEVVI KC+HLFC  CIQR+LEIRHRKCP
Sbjct: 825 SESVEAAIVRLQEEVKNCKNILKCGVCFDRPKEVVIVKCYHLFCQQCIQRSLEIRHRKCP 884

Query: 875 GCGTAFGQSDVRFVKI 890
           GCGTAFGQ+DVR VK+
Sbjct: 885 GCGTAFGQNDVRLVKM 900
E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. H2BK143ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for H3K4me and maybe H3K79me. It thereby plays a central role in histone code and gene regulation. Forms a ubiquitin ligase complex in cooperation with the E2 enzyme UBC2/RAD6.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q336R3|BRE1B_ORYSJ E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. japonica GN=BRE1B PE=2 SV=1 Back     alignment and function description
>sp|A2ZAC2|BRE1B_ORYSI E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. indica GN=BRE1B PE=3 SV=2 Back     alignment and function description
>sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana GN=HUB1 PE=1 SV=1 Back     alignment and function description
>sp|A2XW69|BRE1A_ORYSI E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. indica GN=BRE1A PE=3 SV=2 Back     alignment and function description
>sp|Q7XU27|BRE1A_ORYSJ E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. japonica GN=BRE1A PE=2 SV=3 Back     alignment and function description
>sp|Q4R7K7|BRE1B_MACFA E3 ubiquitin-protein ligase BRE1B OS=Macaca fascicularis GN=RNF40 PE=2 SV=1 Back     alignment and function description
>sp|Q8CJB9|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus norvegicus GN=Rnf40 PE=1 SV=1 Back     alignment and function description
>sp|Q3U319|BRE1B_MOUSE E3 ubiquitin-protein ligase BRE1B OS=Mus musculus GN=Rnf40 PE=2 SV=2 Back     alignment and function description
>sp|O75150|BRE1B_HUMAN E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query890
297746431879 unnamed protein product [Vitis vinifera] 0.983 0.995 0.729 0.0
359478442872 PREDICTED: E3 ubiquitin-protein ligase B 0.975 0.995 0.725 0.0
255580072945 Ubiquitin-protein ligase bre-1, putative 0.961 0.905 0.705 0.0
449448812880 PREDICTED: E3 ubiquitin-protein ligase B 0.976 0.987 0.637 0.0
449519462880 PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu 0.976 0.987 0.636 0.0
356554544879 PREDICTED: E3 ubiquitin-protein ligase B 0.979 0.992 0.630 0.0
334183329899 E3 ubiquitin-protein ligase BRE1-like 2 0.983 0.973 0.598 0.0
240254270900 E3 ubiquitin-protein ligase BRE1-like 2 0.982 0.971 0.596 0.0
356501257881 PREDICTED: E3 ubiquitin-protein ligase B 0.983 0.993 0.627 0.0
297847888879 hypothetical protein ARALYDRAFT_314752 [ 0.980 0.993 0.620 0.0
>gi|297746431|emb|CBI16487.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1266 bits (3275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/894 (72%), Positives = 758/894 (84%), Gaps = 19/894 (2%)

Query: 1   MENEEELKEPEKKKPHLNLNSHSHSHSHSLSPTMARNTPSSPSSNKSVDSAVLQYQNQKL 60
           MEN +  +EPEKK+PHLN          +LS  MARN+  SP  N+SVD+  LQYQNQKL
Sbjct: 1   MENADSSEEPEKKRPHLN----------TLSSPMARNSSVSPD-NRSVDATYLQYQNQKL 49

Query: 61  VQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGVRAGGGSNVL 120
           VQQL+ QKHEL  LE KIKEL+++QTSYD+MLIT+NQLW+  VDDLILLGVRAGGG N +
Sbjct: 50  VQQLEVQKHELHDLEDKIKELKDRQTSYDDMLITMNQLWSQLVDDLILLGVRAGGGQNAI 109

Query: 121 QKLDSENQTRDSIPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMK 180
           Q LD  + +R  IPS P E++FLCRLL+ +S+ES+  DGI++YVEEALA RHSS  EL+K
Sbjct: 110 QTLDHADHSRGLIPSCPAEEIFLCRLLETDSVESNGNDGIVKYVEEALALRHSSTLELIK 169

Query: 181 FIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKE 240
            +E+ IDAQRVKT++IA+A H KLSAEDAIIQLSKIDD+MKEEA NL EV++ +HLKHKE
Sbjct: 170 SLEDTIDAQRVKTENIAQALHGKLSAEDAIIQLSKIDDLMKEEANNLREVIDALHLKHKE 229

Query: 241 YADQIENYISSHSVDQAEIQHLA----ETMAELEESRRKLVSLKMQKDIASGTHSLVPAA 296
           Y D I+ Y+ SHSVDQ+EI+ LA    E+MAELEESRRKLV+LKMQKD+AS  H+  P  
Sbjct: 230 YVDGIQTYVHSHSVDQSEIKRLAGELEESMAELEESRRKLVNLKMQKDVASVVHT--PVQ 287

Query: 297 AMVNGSVSPEKRPADGRMDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQN 356
             VNGS+SPEK  AD  M  +ELKDSVEE KILAADRLSE+ EAQ+DN+ LSKQL++LQN
Sbjct: 288 GAVNGSLSPEKH-ADRTMGFRELKDSVEETKILAADRLSELHEAQEDNLILSKQLQDLQN 346

Query: 357 ELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKEINVRAESAD 416
           EL DDKYV+SSR Y L+NDQLQHWN E ERYK LTDSL  DR+ V+RREKE+N ++E AD
Sbjct: 347 ELKDDKYVYSSRPYTLLNDQLQHWNAEAERYKLLTDSLQADRAQVVRREKELNAKSELAD 406

Query: 417 AARNTVDDSESRIERLEVQLQKSIIEKNDLGLKMEEAIQDSGRKDIKAEFRVMASALSKE 476
           AAR+ +++ +S+IE LE+QLQK +IEKNDL +KM+EA+QDSGRKDIKAEF VMASALSKE
Sbjct: 407 AARSVIEN-DSKIEELELQLQKCLIEKNDLEVKMKEALQDSGRKDIKAEFHVMASALSKE 465

Query: 477 MGMMEAQLNRWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLKALI 536
           MGMME+QLNRWKETA EALSLRE+  SLK  L+ KTNEQK L DKC EQM EIKSLKALI
Sbjct: 466 MGMMESQLNRWKETAHEALSLREQVQSLKALLNKKTNEQKCLADKCEEQMVEIKSLKALI 525

Query: 537 EKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEHSLELRVKAA 596
           EKLQK KLE QI +DM+GQE  D RDLMEIKESE +AH QAEVL+NALDEHSLELRVKAA
Sbjct: 526 EKLQKGKLELQIFVDMHGQESYDNRDLMEIKESEHKAHMQAEVLRNALDEHSLELRVKAA 585

Query: 597 NEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIAEMETIGQAF 656
           NEAEAACQQRLSAAEAEI +L AKLDASERDV+EL+EA++ KD EAEAYI+E+ETIGQA+
Sbjct: 586 NEAEAACQQRLSAAEAEIADLRAKLDASERDVLELKEAIRIKDVEAEAYISEIETIGQAY 645

Query: 657 EDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESAK 716
           EDMQTQNQHLLQQV ERDD NIKLVSESVKTKQ+QSFLLSEKQALA+QLQQ+N  +ES K
Sbjct: 646 EDMQTQNQHLLQQVTERDDYNIKLVSESVKTKQMQSFLLSEKQALAKQLQQVNNALESLK 705

Query: 717 LRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYE 776
           +RI  +EEQMK CL EAL+Y  EDRHLAV+LET KWELADAEKELKWLKSA+ SS+KEYE
Sbjct: 706 MRIAQSEEQMKVCLAEALKYTQEDRHLAVSLETAKWELADAEKELKWLKSALASSEKEYE 765

Query: 777 QIQRKTEDMRKELENERNERKKLEEELMEVNNKVAELTSETGEAAIQKLQDEIKDCKAIL 836
           QIQRK E+++ EL+NER+ER KLEEEL E+N ++AE++SE+GEAAIQKLQDEIKD KAIL
Sbjct: 766 QIQRKKEEVQMELDNERSERLKLEEELKELNREIAEMSSESGEAAIQKLQDEIKDGKAIL 825

Query: 837 KCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRFVKI 890
           KCGVCFDRPKEVVI KC+HLFCNPCIQRNLEIRHRKCP CGTAFGQ+DVRFVKI
Sbjct: 826 KCGVCFDRPKEVVIVKCYHLFCNPCIQRNLEIRHRKCPACGTAFGQNDVRFVKI 879

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359478442|ref|XP_002283417.2| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255580072|ref|XP_002530869.1| Ubiquitin-protein ligase bre-1, putative [Ricinus communis] gi|223529558|gb|EEF31509.1| Ubiquitin-protein ligase bre-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449448812|ref|XP_004142159.1| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449519462|ref|XP_004166754.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase BRE1-like 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356554544|ref|XP_003545605.1| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|334183329|ref|NP_001185233.1| E3 ubiquitin-protein ligase BRE1-like 2 [Arabidopsis thaliana] gi|332195091|gb|AEE33212.1| E3 ubiquitin-protein ligase BRE1-like 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|240254270|ref|NP_564680.4| E3 ubiquitin-protein ligase BRE1-like 2 [Arabidopsis thaliana] gi|257051000|sp|Q9C895.2|BRE1B_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 2; AltName: Full=Protein HISTONE MONOUBIQUITINATION 2; Short=AtHUB2 gi|332195089|gb|AEE33210.1| E3 ubiquitin-protein ligase BRE1-like 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356501257|ref|XP_003519442.1| PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2-like [Glycine max] Back     alignment and taxonomy information
>gi|297847888|ref|XP_002891825.1| hypothetical protein ARALYDRAFT_314752 [Arabidopsis lyrata subsp. lyrata] gi|297337667|gb|EFH68084.1| hypothetical protein ARALYDRAFT_314752 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query890
TAIR|locus:2035726900 HUB2 "histone mono-ubiquitinat 0.935 0.925 0.603 1.6e-262
TAIR|locus:2054997878 HUB1 "histone mono-ubiquitinat 0.931 0.944 0.325 3.9e-115
ZFIN|ZDB-GENE-030131-66071004 rnf40 "ring finger protein 40" 0.626 0.555 0.273 5.7e-45
UNIPROTKB|Q4R7K71001 RNF40 "E3 ubiquitin-protein li 0.414 0.368 0.300 8.8e-45
MGI|MGI:21420481001 Rnf40 "ring finger protein 40" 0.414 0.368 0.303 1.1e-44
UNIPROTKB|E2R1L51001 RNF40 "Uncharacterized protein 0.419 0.372 0.302 1.4e-44
UNIPROTKB|O751501001 RNF40 "E3 ubiquitin-protein li 0.414 0.368 0.300 1.6e-43
UNIPROTKB|Q5RAU71001 RNF40 "E3 ubiquitin-protein li 0.414 0.368 0.300 2.1e-43
UNIPROTKB|F1N9A6984 RNF20 "E3 ubiquitin-protein li 0.624 0.565 0.247 8.2e-42
UNIPROTKB|Q5ZLS3984 RNF20 "E3 ubiquitin-protein li 0.624 0.565 0.247 8.2e-42
TAIR|locus:2035726 HUB2 "histone mono-ubiquitination 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2526 (894.3 bits), Expect = 1.6e-262, P = 1.6e-262
 Identities = 509/843 (60%), Positives = 647/843 (76%)

Query:    52 VLQYQNQKLVQQLDSQKHELQSLEAKIKELQEKQTSYDEMLITVNQLWNLFVDDLILLGV 111
             VLQ QNQKLVQQLD QK +L  +E+KI+ELQ  QTSYD+ LI+VNQLWN  VDDLILLGV
Sbjct:    64 VLQLQNQKLVQQLDLQKKQLYDVESKIQELQLNQTSYDDELISVNQLWNQLVDDLILLGV 123

Query:   112 RAGGGSNVLQKLDSENQTRDSIPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASR 171
             RAG     L  LD  ++ R  +P    ++ FLCRLLQV+S+++S  D +++ VEEALA R
Sbjct:   124 RAGANQEALNYLDIVDKKR--VPPCAADETFLCRLLQVDSLDTSKSDEVVRKVEEALALR 181

Query:   172 HSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVM 231
             HSS  ELM   E  ID Q+ K +SI+++ H   S EDA IQLS I+D+MKEE+KNL E++
Sbjct:   182 HSSTMELMGLFENTIDTQKTKAESISQSLHAVKSTEDATIQLSSINDLMKEESKNLREMI 241

Query:   232 EIIHLKHKEYADQIENYISSHSVDQAEIQHLA----ETMAELEESRRKLVSLKMQKDIAS 287
             + +H++HKE+++QI+ YISSHS DQ+E++HL     E  AELEE+RRKL++LKMQKD A 
Sbjct:   242 DALHVRHKEHSEQIQAYISSHSTDQSELKHLKGQLEEIKAELEENRRKLITLKMQKDAAC 301

Query:   288 GTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSVEEAKILAADRLSEVEEAQQDNINL 347
               H   PA A  NGS+SPEK P D +  L+ELKDS++E KI+A  RLSE++ +Q+ N++L
Sbjct:   302 EGHVTSPAIA--NGSLSPEK-PVD-KTKLRELKDSIDEIKIMAEGRLSELQASQEYNLSL 357

Query:   348 SKQLENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLRREKE 407
             S+Q ++++NEL DD+Y++SSRLY+L+ND++ HWN E++RYK LT+++  +RS V+RR+KE
Sbjct:   358 SRQCQDIENELKDDQYIYSSRLYSLINDRIHHWNAELDRYKILTEAIQAERSFVMRRDKE 417

Query:   408 INVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKMEEAIQDSGRKDIKAEFR 467
             +N+RAES +AA +      SRIE LE +LQ  IIEKN L L+ EEAIQDS R+DIK+EF 
Sbjct:   418 LNLRAESLEAANHKTTTVGSRIEVLEKKLQSCIIEKNGLELETEEAIQDSERQDIKSEFI 477

Query:   468 VMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMA 527
              MAS LSKEM MMEAQL RWK+TA +AL LRE+A SL+VSLS K +EQK L DKC +QMA
Sbjct:   478 AMASTLSKEMEMMEAQLKRWKDTAQDALYLREQAQSLRVSLSNKADEQKGLEDKCAKQMA 537

Query:   528 EIKSLKALIEKLQKDKLESQIMLDMYGQEGRDPRDLMEIKESERRAHSQAEVLKNALDEH 587
             EIKSLKALIEKL K+KL+ Q +  +  +E  D R L EIK+S+R+A +QAE LKN LDEH
Sbjct:   538 EIKSLKALIEKLLKEKLQLQNLASICTRECNDDRGLAEIKDSQRKAQAQAEELKNVLDEH 597

Query:   588 SLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEEAMKSKDREAEAYIA 647
              LELRVKAA+E E+ACQ+RL+ A+AEI EL  +LD SER+V+EL+E +K K++EAEA IA
Sbjct:   598 FLELRVKAAHETESACQERLATAKAEIAELRTQLDLSEREVLELKEGIKVKEQEAEASIA 657

Query:   648 EMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQ 707
             EMETIGQA+EDMQTQNQHLLQQVAERDD NIKLVSESVKTK   +  LSEKQ + +QL Q
Sbjct:   658 EMETIGQAYEDMQTQNQHLLQQVAERDDYNIKLVSESVKTKHAYNTHLSEKQVMEKQLHQ 717

Query:   708 INALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSA 767
             +NA VE+ K RI H EEQMK C +EA +   EDRHL ++LETTKWE+ADA+KE +WLKSA
Sbjct:   718 VNASVENFKARIAHNEEQMKGCFSEAYKLIQEDRHLVISLETTKWEVADADKEFRWLKSA 777

Query:   768 VTSSDKEYEQIQRKTEDXXXXXXXXXXXXXXXXXXXXXVNNKVAELTSETGEAAIQKLQD 827
             V+SS+KEYEQI R+T+D                     +N ++ EL SE+ EAAI +LQ+
Sbjct:   778 VSSSEKEYEQISRRTDDIKLELDDERREKKKLEEELMELNKELEELGSESVEAAIVRLQE 837

Query:   828 EIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVRF 887
             E+K+CK ILKCGVCFDRPKEVVI KC+HLFC  CIQR+LEIRHRKCPGCGTAFGQ+DVR 
Sbjct:   838 EVKNCKNILKCGVCFDRPKEVVIVKCYHLFCQQCIQRSLEIRHRKCPGCGTAFGQNDVRL 897

Query:   888 VKI 890
             VK+
Sbjct:   898 VKM 900
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0010162 "seed dormancy process" evidence=IMP
GO:0010390 "histone monoubiquitination" evidence=IMP
GO:0009965 "leaf morphogenesis" evidence=IMP
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA;IMP
GO:0033523 "histone H2B ubiquitination" evidence=IMP
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0007346 "regulation of mitotic cell cycle" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2054997 HUB1 "histone mono-ubiquitination 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6607 rnf40 "ring finger protein 40" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R7K7 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
MGI|MGI:2142048 Rnf40 "ring finger protein 40" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R1L5 RNF40 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O75150 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RAU7 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|F1N9A6 RNF20 "E3 ubiquitin-protein ligase BRE1A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZLS3 RNF20 "E3 ubiquitin-protein ligase BRE1A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C895BRE1B_ARATH6, ., 3, ., 2, ., -0.59600.98200.9711yesno
A2ZAC2BRE1B_ORYSI6, ., 3, ., 2, ., -0.54420.94380.9952N/Ano
Q336R3BRE1B_ORYSJ6, ., 3, ., 2, ., -0.54420.94380.9952yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query890
smart0018440 smart00184, RING, Ring finger 8e-12
cd0016245 cd00162, RING, RING-finger (Really Interesting New 3e-11
pfam0009740 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING 5e-11
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 6e-11
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-10
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-10
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-10
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-09
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-09
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-08
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-07
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 4e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-06
pfam1392049 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI 1e-06
pfam1363946 pfam13639, zf-RING_2, Ring finger domain 2e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-06
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 2e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-05
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 6e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-05
PRK04863 1486 PRK04863, mukB, cell division protein MukB; Provis 9e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 1e-04
TIGR00599 397 TIGR00599, rad18, DNA repair protein rad18 2e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-04
PLN03208 193 PLN03208, PLN03208, E3 ubiquitin-protein ligase RM 4e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-04
TIGR00606 1311 TIGR00606, rad50, rad50 0.001
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.001
COG4372 499 COG4372, COG4372, Uncharacterized protein conserve 0.001
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 0.002
COG4942 420 COG4942, COG4942, Membrane-bound metallopeptidase 0.002
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.003
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.003
COG5222427 COG5222, COG5222, Uncharacterized conserved protei 0.003
pfam13166 713 pfam13166, AAA_13, AAA domain 0.004
>gnl|CDD|214546 smart00184, RING, Ring finger Back     alignment and domain information 
 Score = 60.2 bits (146), Expect = 8e-12
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 838 CGVCFDR-PKEVVITKCFHLFCNPCIQRNLEIRHRKCPGC 876
           C +C +   K+ VI  C H FC  CI++ LE  +  CP C
Sbjct: 1   CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18 Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|178747 PLN03208, PLN03208, E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|129694 TIGR00606, rad50, rad50 Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|227547 COG5222, COG5222, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 890
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 100.0
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 99.92
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 99.85
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 99.84
COG11961163 Smc Chromosome segregation ATPases [Cell division 99.79
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 99.75
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 99.73
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 99.71
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 99.71
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 99.7
PRK02224880 chromosome segregation protein; Provisional 99.67
PF10174775 Cast: RIM-binding protein of the cytomatrix active 99.67
PRK02224880 chromosome segregation protein; Provisional 99.67
PF10174775 Cast: RIM-binding protein of the cytomatrix active 99.66
KOG0996 1293 consensus Structural maintenance of chromosome pro 99.6
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 99.59
PRK03918880 chromosome segregation protein; Provisional 99.55
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 99.53
PRK03918880 chromosome segregation protein; Provisional 99.53
KOG0962 1294 consensus DNA repair protein RAD50, ABC-type ATPas 99.53
KOG0996 1293 consensus Structural maintenance of chromosome pro 99.45
KOG0933 1174 consensus Structural maintenance of chromosome pro 99.43
PLN03208 193 E3 ubiquitin-protein ligase RMA2; Provisional 99.4
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 99.38
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 99.35
smart0050463 Ubox Modified RING finger domain. Modified RING fi 99.33
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 99.29
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 99.28
KOG0823 230 consensus Predicted E3 ubiquitin ligase [Posttrans 99.27
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 99.26
PRK01156 895 chromosome segregation protein; Provisional 99.25
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 99.24
KOG0933 1174 consensus Structural maintenance of chromosome pro 99.24
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 99.21
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 99.19
PRK01156895 chromosome segregation protein; Provisional 99.19
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 99.18
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 99.17
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 99.17
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 99.14
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 99.14
PRK04863 1486 mukB cell division protein MukB; Provisional 99.14
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 99.08
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 99.08
PHA02926242 zinc finger-like protein; Provisional 99.07
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 99.06
PF1463444 zf-RING_5: zinc-RING finger domain 99.05
PHA02929238 N1R/p28-like protein; Provisional 99.03
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 99.01
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 98.95
PF05701522 WEMBL: Weak chloroplast movement under blue light; 98.95
PRK04778569 septation ring formation regulator EzrA; Provision 98.93
cd0016245 RING RING-finger (Really Interesting New Gene) dom 98.92
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 98.91
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 98.89
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 98.88
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 98.86
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 98.81
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 98.81
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 98.78
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 98.78
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 98.78
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 98.77
KOG0964 1200 consensus Structural maintenance of chromosome pro 98.76
PRK04863 1486 mukB cell division protein MukB; Provisional 98.75
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 98.75
KOG0964 1200 consensus Structural maintenance of chromosome pro 98.72
PRK04778569 septation ring formation regulator EzrA; Provision 98.72
KOG0977546 consensus Nuclear envelope protein lamin, intermed 98.68
PF05701522 WEMBL: Weak chloroplast movement under blue light; 98.65
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 98.63
KOG0311 381 consensus Predicted E3 ubiquitin ligase [Posttrans 98.6
PF00038312 Filament: Intermediate filament protein; InterPro: 98.59
KOG0018 1141 consensus Structural maintenance of chromosome pro 98.57
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 98.54
COG5152259 Uncharacterized conserved protein, contains RING a 98.52
KOG0824 324 consensus Predicted E3 ubiquitin ligase [Posttrans 98.52
PF00038312 Filament: Intermediate filament protein; InterPro: 98.5
KOG0977546 consensus Nuclear envelope protein lamin, intermed 98.48
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 98.47
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 98.47
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 98.45
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 98.45
COG5243 491 HRD1 HRD ubiquitin ligase complex, ER membrane com 98.43
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 98.39
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 98.37
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 98.36
TIGR00570 309 cdk7 CDK-activating kinase assembly factor MAT1. A 98.35
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 98.35
PF04641260 Rtf2: Rtf2 RING-finger 98.35
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 98.34
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 98.32
KOG1785 563 consensus Tyrosine kinase negative regulator CBL [ 98.28
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 98.28
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 98.27
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 98.25
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 98.22
KOG4159 398 consensus Predicted E3 ubiquitin ligase [Posttrans 98.2
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 98.19
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 98.18
KOG0018 1141 consensus Structural maintenance of chromosome pro 98.17
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 98.16
KOG0802 543 consensus E3 ubiquitin ligase [Posttranslational m 98.15
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 98.15
KOG4673961 consensus Transcription factor TMF, TATA element m 98.15
KOG4275350 consensus Predicted E3 ubiquitin ligase [Posttrans 98.07
KOG0971 1243 consensus Microtubule-associated protein dynactin 98.07
KOG3039303 consensus Uncharacterized conserved protein [Funct 98.05
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 98.05
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 98.04
KOG2660 331 consensus Locus-specific chromosome binding protei 98.03
PRK11637428 AmiB activator; Provisional 98.02
PHA02562562 46 endonuclease subunit; Provisional 98.0
PRK11637428 AmiB activator; Provisional 97.97
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 97.97
COG5222427 Uncharacterized conserved protein, contains RING Z 97.95
KOG4673961 consensus Transcription factor TMF, TATA element m 97.91
PHA02562562 46 endonuclease subunit; Provisional 97.91
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 97.9
KOG0825 1134 consensus PHD Zn-finger protein [General function 97.9
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 97.88
KOG1003205 consensus Actin filament-coating protein tropomyos 97.83
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 97.81
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 97.81
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 97.78
COG4372 499 Uncharacterized protein conserved in bacteria with 97.77
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 97.76
KOG1002 791 consensus Nucleotide excision repair protein RAD16 97.75
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 97.74
KOG0297 391 consensus TNF receptor-associated factor [Signal t 97.73
PF14662193 CCDC155: Coiled-coil region of CCDC155 97.73
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 97.69
COG5220 314 TFB3 Cdk activating kinase (CAK)/RNA polymerase II 97.64
KOG4593716 consensus Mitotic checkpoint protein MAD1 [Cell cy 97.64
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 97.63
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 97.59
COG4372 499 Uncharacterized protein conserved in bacteria with 97.56
KOG1039 344 consensus Predicted E3 ubiquitin ligase [Posttrans 97.5
KOG149384 consensus Anaphase-promoting complex (APC), subuni 97.48
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 97.48
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 97.46
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 97.46
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 97.44
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 97.42
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 97.42
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 97.41
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 97.41
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 97.4
KOG0826357 consensus Predicted E3 ubiquitin ligase involved i 97.26
KOG2817394 consensus Predicted E3 ubiquitin ligase [Posttrans 97.26
KOG0804 493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 97.25
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 97.24
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 97.23
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 97.19
KOG1814 445 consensus Predicted E3 ubiquitin ligase [Posttrans 97.16
COG519488 APC11 Component of SCF ubiquitin ligase and anapha 97.11
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 97.08
KOG1001 674 consensus Helicase-like transcription factor HLTF/ 97.02
PRK09039343 hypothetical protein; Validated 97.02
KOG3113 293 consensus Uncharacterized conserved protein [Funct 97.02
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 96.96
KOG3800 300 consensus Predicted E3 ubiquitin ligase containing 96.83
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 96.74
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 96.69
KOG0962 1294 consensus DNA repair protein RAD50, ABC-type ATPas 96.63
COG5175 480 MOT2 Transcriptional repressor [Transcription] 96.62
KOG2034911 consensus Vacuolar sorting protein PEP3/VPS18 [Int 96.59
PF05290140 Baculo_IE-1: Baculovirus immediate-early protein ( 96.59
KOG3002 299 consensus Zn finger protein [General function pred 96.55
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 96.55
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 96.5
COG5236 493 Uncharacterized conserved protein, contains RING Z 96.42
KOG09711243 consensus Microtubule-associated protein dynactin 96.42
KOG4185 296 consensus Predicted E3 ubiquitin ligase [Posttrans 96.4
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 96.4
KOG3161 861 consensus Predicted E3 ubiquitin ligase [Posttrans 96.38
PF10272358 Tmpp129: Putative transmembrane protein precursor; 96.38
KOG1100207 consensus Predicted E3 ubiquitin ligase [Posttrans 96.31
PF1179370 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. 96.3
COG52191525 Uncharacterized conserved protein, contains RING Z 96.25
PF0864796 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395 96.2
KOG4362 684 consensus Transcriptional regulator BRCA1 [Replica 96.18
KOG3579352 consensus Predicted E3 ubiquitin ligase [Posttrans 96.18
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 96.17
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 96.15
PF13514 1111 AAA_27: AAA domain 96.13
KOG2114933 consensus Vacuolar assembly/sorting protein PEP5/V 96.12
COG4477570 EzrA Negative regulator of septation ring formatio 96.12
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 96.08
PF05911769 DUF869: Plant protein of unknown function (DUF869) 96.04
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 96.0
PF10367109 Vps39_2: Vacuolar sorting protein 39 domain 2; Int 95.99
KOG0963 629 consensus Transcription factor/CCAAT displacement 95.95
KOG0980980 consensus Actin-binding protein SLA2/Huntingtin-in 95.94
KOG1941518 consensus Acetylcholine receptor-associated protei 95.91
COG5185622 HEC1 Protein involved in chromosome segregation, i 95.86
KOG0963 629 consensus Transcription factor/CCAAT displacement 95.86
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 95.84
PF0289150 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 95.76
KOG0993542 consensus Rab5 GTPase effector Rabaptin-5 [Intrace 95.75
PF0385450 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc 95.68
KOG0827 465 consensus Predicted E3 ubiquitin ligase [Posttrans 95.66
KOG1645 463 consensus RING-finger-containing E3 ubiquitin liga 95.64
PF10481 307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 95.57
COG3883265 Uncharacterized protein conserved in bacteria [Fun 95.49
KOG3970 299 consensus Predicted E3 ubiquitin ligase [Posttrans 95.48
PHA03096284 p28-like protein; Provisional 95.41
KOG3899381 consensus Uncharacterized conserved protein [Funct 95.34
PF09730717 BicD: Microtubule-associated protein Bicaudal-D; I 95.18
PRK10929 1109 putative mechanosensitive channel protein; Provisi 95.16
COG5109396 Uncharacterized conserved protein, contains RING Z 95.1
PRK11281 1113 hypothetical protein; Provisional 95.07
COG3883265 Uncharacterized protein conserved in bacteria [Fun 94.97
KOG4185296 consensus Predicted E3 ubiquitin ligase [Posttrans 94.97
COG381384 Uncharacterized protein conserved in bacteria [Fun 94.95
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 94.9
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 94.85
KOG3039 303 consensus Uncharacterized conserved protein [Funct 94.82
KOG2932 389 consensus E3 ubiquitin ligase involved in ubiquiti 94.77
KOG4593716 consensus Mitotic checkpoint protein MAD1 [Cell cy 94.69
KOG2930114 consensus SCF ubiquitin ligase, Rbx1 component [Po 94.63
PF135141111 AAA_27: AAA domain 94.63
KOG0979 1072 consensus Structural maintenance of chromosome pro 94.59
KOG4445 368 consensus Uncharacterized conserved protein, conta 94.56
KOG0298 1394 consensus DEAD box-containing helicase-like transc 94.48
KOG0827 465 consensus Predicted E3 ubiquitin ligase [Posttrans 94.4
KOG09791072 consensus Structural maintenance of chromosome pro 94.33
KOG0825 1134 consensus PHD Zn-finger protein [General function 94.28
COG4647165 AcxC Acetone carboxylase, gamma subunit [Secondary 94.11
PF1456980 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A. 94.04
PF07111739 HCR: Alpha helical coiled-coil rod protein (HCR); 94.0
KOG1815 444 consensus Predicted E3 ubiquitin ligase [Posttrans 94.0
PF05911769 DUF869: Plant protein of unknown function (DUF869) 93.66
KOG4360 596 consensus Uncharacterized coiled coil protein [Fun 93.61
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 93.27
PRK11281 1113 hypothetical protein; Provisional 93.23
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 93.11
KOG1812 384 consensus Predicted E3 ubiquitin ligase [Posttrans 93.1
PF1023590 Cript: Microtubule-associated protein CRIPT; Inter 93.08
KOG4360596 consensus Uncharacterized coiled coil protein [Fun 93.07
PF0690657 DUF1272: Protein of unknown function (DUF1272); In 93.01
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 92.92
PF13851201 GAS: Growth-arrest specific micro-tubule binding 92.89
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 92.85
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 92.74
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 92.56
PF05883134 Baculo_RING: Baculovirus U-box/Ring-like domain; I 92.39
cd0006557 FYVE FYVE domain; Zinc-binding domain; targets pro 92.33
PRK10929 1109 putative mechanosensitive channel protein; Provisi 92.3
PF04111 314 APG6: Autophagy protein Apg6; InterPro: IPR007243 92.12
PF12777344 MT: Microtubule-binding stalk of dynein motor; Int 92.04
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 91.96
TIGR01562305 FdhE formate dehydrogenase accessory protein FdhE. 91.76
PF07800 162 DUF1644: Protein of unknown function (DUF1644); In 91.67
PF0719170 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 91.66
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 91.57
TIGR00634563 recN DNA repair protein RecN. All proteins in this 91.45
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 91.4
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 91.17
KOG1899 861 consensus LAR transmembrane tyrosine phosphatase-i 91.16
PF0136369 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f 91.11
PTZ00303 1374 phosphatidylinositol kinase; Provisional 91.08
PF14319111 Zn_Tnp_IS91: Transposase zinc-binding domain 90.68
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 90.48
PF07111739 HCR: Alpha helical coiled-coil rod protein (HCR); 90.44
PRK04023 1121 DNA polymerase II large subunit; Validated 90.2
PF02318118 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 90.0
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 89.81
PF08882112 Acetone_carb_G: Acetone carboxylase gamma subunit; 89.8
COG2433652 Uncharacterized conserved protein [Function unknow 89.62
PF1057126 UPF0547: Uncharacterised protein family UPF0547; I 89.6
PF13870177 DUF4201: Domain of unknown function (DUF4201) 89.43
PF04710416 Pellino: Pellino; InterPro: IPR006800 Pellino is i 89.34
KOG1952 950 consensus Transcription factor NF-X1, contains NFX 89.33
KOG2113394 consensus Predicted RNA binding protein, contains 89.19
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 89.08
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 89.06
KOG03091081 consensus Conserved WD40 repeat-containing protein 88.75
PRK03564309 formate dehydrogenase accessory protein FdhE; Prov 88.69
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 88.66
PF04216290 FdhE: Protein involved in formate dehydrogenase fo 88.58
KOG2068327 consensus MOT2 transcription factor [Transcription 88.56
smart0006468 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 88.47
PF0874643 zf-RING-like: RING-like domain; InterPro: IPR01485 88.33
KOG1729288 consensus FYVE finger containing protein [General 88.28
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 88.05
PF06818202 Fez1: Fez1; InterPro: IPR009638 This family repres 87.94
PF13870177 DUF4201: Domain of unknown function (DUF4201) 87.78
KOG2979262 consensus Protein involved in DNA repair [General 87.69
KOG1940276 consensus Zn-finger protein [General function pred 87.53
PF1324023 zinc_ribbon_2: zinc-ribbon domain 87.36
KOG3842429 consensus Adaptor protein Pellino [Signal transduc 87.3
COG3364112 Zn-ribbon containing protein [General function pre 87.24
COG4026290 Uncharacterized protein containing TOPRIM domain, 87.2
PF04582326 Reo_sigmaC: Reovirus sigma C capsid protein; Inter 87.05
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 86.97
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 86.95
PF15290305 Syntaphilin: Golgi-localised syntaxin-1-binding cl 86.92
PF05384159 DegS: Sensor protein DegS; InterPro: IPR008595 Thi 86.65
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 86.63
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 86.59
KOG1850391 consensus Myosin-like coiled-coil protein [Cytoske 86.4
PHA02862156 5L protein; Provisional 86.08
PF15290305 Syntaphilin: Golgi-localised syntaxin-1-binding cl 86.03
PF06785401 UPF0242: Uncharacterised protein family (UPF0242); 85.94
PF1324826 zf-ribbon_3: zinc-ribbon domain 85.8
PLN02189 1040 cellulose synthase 85.69
KOG4718235 consensus Non-SMC (structural maintenance of chrom 85.63
TIGR00634 563 recN DNA repair protein RecN. All proteins in this 85.46
KOG3268234 consensus Predicted E3 ubiquitin ligase [Posttrans 85.45
KOG2462279 consensus C2H2-type Zn-finger protein [Transcripti 84.97
cd0035033 rubredoxin_like Rubredoxin_like; nonheme iron bind 84.77
PF0797551 C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al 84.74
KOG0249 916 consensus LAR-interacting protein and related prot 84.54
PRK11032160 hypothetical protein; Provisional 84.5
PF1057126 UPF0547: Uncharacterised protein family UPF0547; I 84.49
PLN02436 1094 cellulose synthase A 84.45
PF0560554 zf-Di19: Drought induced 19 protein (Di19), zinc-b 84.34
PF04710416 Pellino: Pellino; InterPro: IPR006800 Pellino is i 84.33
COG5185622 HEC1 Protein involved in chromosome segregation, i 84.33
KOG3842429 consensus Adaptor protein Pellino [Signal transduc 84.01
PF10267395 Tmemb_cc2: Predicted transmembrane and coiled-coil 83.7
PRK14714 1337 DNA polymerase II large subunit; Provisional 83.66
KOG0249 916 consensus LAR-interacting protein and related prot 83.52
COG0068 750 HypF Hydrogenase maturation factor [Posttranslatio 83.49
COG1592166 Rubrerythrin [Energy production and conversion] 83.07
PF09986 214 DUF2225: Uncharacterized protein conserved in bact 82.77
PLN02195 977 cellulose synthase A 82.55
PRK13169110 DNA replication intiation control protein YabA; Re 82.47
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 82.16
KOG2113 394 consensus Predicted RNA binding protein, contains 82.05
PHA02825162 LAP/PHD finger-like protein; Provisional 81.92
PF1232974 TMF_DNA_bd: TATA element modulatory factor 1 DNA b 81.8
PLN02638 1079 cellulose synthase A (UDP-forming), catalytic subu 81.77
COG2433652 Uncharacterized conserved protein [Function unknow 81.74
PF14353128 CpXC: CpXC protein 81.74
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 81.67
PF12795240 MscS_porin: Mechanosensitive ion channel porin dom 81.21
PF13851201 GAS: Growth-arrest specific micro-tubule binding 81.19
PRK10884206 SH3 domain-containing protein; Provisional 81.18
KOG4739 233 consensus Uncharacterized protein involved in syna 80.75
PRK102461047 exonuclease subunit SbcC; Provisional 80.73
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 80.61
KOG1842 505 consensus FYVE finger-containing protein [General 80.59
KOG0972384 consensus Huntingtin interacting protein 1 (Hip1) 80.54
PF09538108 FYDLN_acid: Protein of unknown function (FYDLN_aci 80.3
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-40  Score=355.05  Aligned_cols=679  Identities=30%  Similarity=0.428  Sum_probs=487.3

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002710          168 LASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIEN  247 (890)
Q Consensus       168 l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~l~~  247 (890)
                      +..++.............++.++...+.+...+..      +...+......+..+...++..++.+..++..+...+..
T Consensus         7 ~~~~i~~~~~~~~~~~~~~D~lq~~~e~~~~~~~~------~~e~l~~~~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~e   80 (698)
T KOG0978|consen    7 LAGRIKSEKEAVSLVLIQIDDLQTQAEELARRLNR------VEEALTVLFDELAEENEKLQNLADHLQEKHATLSEQISE   80 (698)
T ss_pred             hHHHHHhhhhhhcccchhhHHHHHHHHHHHhhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555544444333      333455666677777777888888888887777777777


Q ss_pred             HHHhhhhhhHHHHHHHHHHH----HHHHHHHHHHHHhhhhccccCccccCccccccCCCCCCCCCCcccccchHHHHhhH
Q 002710          248 YISSHSVDQAEIQHLAETMA----ELEESRRKLVSLKMQKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSV  323 (890)
Q Consensus       248 ~~~~~~~~~~~l~~l~~~~~----~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  323 (890)
                      +.+.+.....+...+...++    +++....+...+...+.....     +....+++.......+.-....+..+...+
T Consensus        81 l~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~-----~~~t~~~~~~~~~~~~t~~~t~~~~l~~~i  155 (698)
T KOG0978|consen   81 LLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALE-----HLNTYGNGNGSLSGTITVNSTELEELRDEI  155 (698)
T ss_pred             HHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCCCCCcccccCcccccchhhhhhhccch
Confidence            77777777777777774333    333433333333333321111     111111111111111223334577888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710          324 EEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLIDRSLVLR  403 (890)
Q Consensus       324 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~e~~~l~~  403 (890)
                      +.+......+..+++.++..+..+..++..+...+..+.......     ...+..++     +...+....       .
T Consensus       156 ee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~e~~~~~-----~NE~l~~~~-------~  218 (698)
T KOG0978|consen  156 EELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSE-----TFELRCLQ-----YNEELQRKT-------M  218 (698)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----HHHHHHHH-----hhhhccccc-------c
Confidence            888888888899999999888888888887776652221111110     00000000     000000000       0


Q ss_pred             HHHHHHhhhchHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHHHHHHHH
Q 002710          404 REKEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKMEEAIQDSG-RKDIKAEFRVMASALSKEMGMMEA  482 (890)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~-~~~~~~el~~~~~~l~~~~~~l~~  482 (890)
                      ...++               .....+..++..+..+..+++++....+......+ +..+..++..+...+......+..
T Consensus       219 ~~~e~---------------~~~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~~  283 (698)
T KOG0978|consen  219 ESDEA---------------INSKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLKE  283 (698)
T ss_pred             hhhhh---------------hccchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            00000               01222456667777777778887777666655555 568899999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhhhhHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHhccCCCCcc
Q 002710          483 QLNRWKETADEALSLREKAVSLKVSLSAKTNEQKRLTDKCVEQMAEIKSLK-ALIEKLQKDKLESQIMLDMYGQEGRDPR  561 (890)
Q Consensus       483 ~~~~~~~~~~~l~~l~~~~~~l~~~l~~l~~~~~~l~~~~~~~~~el~~l~-~~~~~l~~~~~~l~~~~~~~~~~~~~~~  561 (890)
                      ...+|.........++.....+...+.........+...+.....++..+. .-+..+......++.....+.......+
T Consensus       284 ~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~  363 (698)
T KOG0978|consen  284 YERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQKER  363 (698)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhH
Confidence            888899888888888888888777666645555555555555555555555 3333444445555555556666666666


Q ss_pred             hHHHHHHHHHH-HHHHHHHHHhhhhhhhHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHhHH---HHHHHHHHH
Q 002710          562 DLMEIKESERR-AHSQAEVLKNALDEHSLELRVKAANEAEAACQQRLS-AAEAEIIELV-AKLDASER---DVMELEEAM  635 (890)
Q Consensus       562 ~i~~l~~~~~~-~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~l~-~l~~el~~l~-~~~~~~~~---~~~~l~~~~  635 (890)
                      ++.....+... ++..+..+...+......+.+.... +...+.+++. -.+.+...++ ...+...+   +...+...+
T Consensus       364 di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~-E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~L  442 (698)
T KOG0978|consen  364 DILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARA-ETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEEL  442 (698)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHH
Confidence            66655555433 6666666666555444433333333 3333333333 3334445554 23444455   444455566


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710          636 KSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQQVAERDDLNIKLVSESVKTKQVQSFLLSEKQALARQLQQINALVESA  715 (890)
Q Consensus       636 ~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~l~~~~~~l~~el~~~~~~~~~~  715 (890)
                      .........+..++..++.++++++.++.++..++...+.+.-.++.+...+.+.+..+..++..+...+..+....+.+
T Consensus       443 qk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~  522 (698)
T KOG0978|consen  443 QKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKL  522 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002710          716 KLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKWELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENERNE  795 (890)
Q Consensus       716 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~  795 (890)
                      ...+..++++.+.+......+..++..+...++...+.+.++...+..++..+......+..++..+.++..++......
T Consensus       523 ~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k  602 (698)
T KOG0978|consen  523 ELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFK  602 (698)
T ss_pred             HHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHhHhcccCcccccccccccCCcccccCCCcccHHHHHHHhccCCCCcc
Q 002710          796 RKKLEEELMEVNNKVAELTSETGE-AAIQKLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCP  874 (890)
Q Consensus       796 ~~~l~~e~~~l~~~l~~l~~~~~~-~~~~~l~~e~~~~~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~~~CP  874 (890)
                      ..++++++..++.++.+++....+ .....|.+++..|+..++||+|..+|+++|+++|||+||+.|++..+.+|+|+||
T Consensus       603 ~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP  682 (698)
T KOG0978|consen  603 RKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCP  682 (698)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCC
Confidence            999999999999999999988876 6789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCcCCCCcccccC
Q 002710          875 GCGTAFGQSDVRFVKI  890 (890)
Q Consensus       875 ~C~~~~~~~d~~~~~~  890 (890)
                      .|+.+||++||+||||
T Consensus       683 ~Cn~aFganDv~~I~l  698 (698)
T KOG0978|consen  683 KCNAAFGANDVHRIHL  698 (698)
T ss_pred             CCCCCCCcccccccCC
Confidence            9999999999999997

>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG3113 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] Back     alignment and domain information
>COG5175 MOT2 Transcriptional repressor [Transcription] Back     alignment and domain information
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0 Back     alignment and domain information
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans Back     alignment and domain information
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A Back     alignment and domain information
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [] Back     alignment and domain information
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA03096 p28-like protein; Provisional Back     alignment and domain information
>KOG3899 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A Back     alignment and domain information
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins Back     alignment and domain information
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length Back     alignment and domain information
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE Back     alignment and domain information
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function Back     alignment and domain information
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] Back     alignment and domain information
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PTZ00303 phosphatidylinositol kinase; Provisional Back     alignment and domain information
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins Back     alignment and domain information
>PRK04023 DNA polymerase II large subunit; Validated Back     alignment and domain information
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits) Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ] Back     alignment and domain information
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription] Back     alignment and domain information
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only] Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex [] Back     alignment and domain information
>KOG2068 consensus MOT2 transcription factor [Transcription] Back     alignment and domain information
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 Back     alignment and domain information
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO) Back     alignment and domain information
>KOG1729 consensus FYVE finger containing protein [General function prediction only] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>KOG2979 consensus Protein involved in DNA repair [General function prediction only] Back     alignment and domain information
>KOG1940 consensus Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF13240 zinc_ribbon_2: zinc-ribbon domain Back     alignment and domain information
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms] Back     alignment and domain information
>COG3364 Zn-ribbon containing protein [General function prediction only] Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp Back     alignment and domain information
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton] Back     alignment and domain information
>PHA02862 5L protein; Provisional Back     alignment and domain information
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>PF13248 zf-ribbon_3: zinc-ribbon domain Back     alignment and domain information
>PLN02189 cellulose synthase Back     alignment and domain information
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription] Back     alignment and domain information
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center Back     alignment and domain information
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>PRK11032 hypothetical protein; Provisional Back     alignment and domain information
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines Back     alignment and domain information
>PLN02436 cellulose synthase A Back     alignment and domain information
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins Back     alignment and domain information
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ] Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms] Back     alignment and domain information
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans Back     alignment and domain information
>PRK14714 DNA polymerase II large subunit; Provisional Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1592 Rubrerythrin [Energy production and conversion] Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>PLN02195 cellulose synthase A Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only] Back     alignment and domain information
>PHA02825 LAP/PHD finger-like protein; Provisional Back     alignment and domain information
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures Back     alignment and domain information
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14353 CpXC: CpXC protein Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PRK10246 exonuclease subunit SbcC; Provisional Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>KOG1842 consensus FYVE finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms] Back     alignment and domain information
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query890
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-16
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-15
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-11
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-11
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-06
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 2e-12
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 2e-11
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 2e-11
1z6u_A150 NP95-like ring finger protein isoform B; structura 3e-11
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 5e-11
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 6e-11
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 6e-11
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 1e-10
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 2e-10
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 5e-10
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 7e-10
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 9e-10
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 9e-10
4epo_C149 E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 2e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 9e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-04
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 3e-09
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 6e-09
2ysl_A73 Tripartite motif-containing protein 31; ring-type 1e-08
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 1e-08
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 1e-08
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 3e-08
2ecw_A85 Tripartite motif-containing protein 30; metal bind 5e-08
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 5e-08
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 6e-08
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 7e-08
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 2e-07
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 2e-07
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 2e-07
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 4e-07
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 6e-07
2ysj_A63 Tripartite motif-containing protein 31; ring-type 9e-07
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 1e-06
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 1e-06
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 2e-06
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 2e-06
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 2e-06
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 7e-05
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 3e-06
2ecm_A55 Ring finger and CHY zinc finger domain- containing 4e-06
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 6e-06
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 1e-05
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 2e-05
2ea5_A68 Cell growth regulator with ring finger domain prot 3e-05
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 6e-05
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 2e-04
2xs1_A704 Programmed cell death 6-interacting protein; prote 3e-04
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 3e-04
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 4e-04
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 6e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 88.8 bits (219), Expect = 4e-18
 Identities = 110/737 (14%), Positives = 234/737 (31%), Gaps = 217/737 (29%)

Query: 148 QVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRVK--TKSI--AEAFHEK 203
           +    +   KD IL   E+A             F++   D + V+   KSI   E     
Sbjct: 10  ETGEHQYQYKD-ILSVFEDA-------------FVDN-FDCKDVQDMPKSILSKEEIDHI 54

Query: 204 LSAEDAIIQLSKIDDMMKEEAKNLHE-------------VMEIIHLKHKEYADQIENYIS 250
           + ++DA+    ++   +  + + + +             +M  I  + ++ +     YI 
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 251 SHSVDQAEIQHLA-------ETMAELEESRRKLVSLKMQKDIA------SGTHSLVPAAA 297
                  + Q  A       +   +L   R+ L+ L+  K++       SG   +   A 
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKL---RQALLELRPAKNVLIDGVLGSGKTWV---AL 168

Query: 298 MVNGSVSPEKRPADGR--MDLQELKDSVEEAKILAA--DRLSEVEEAQQDN-INLSKQLE 352
            V  S   + +       ++L+         ++L     ++     ++ D+  N+  ++ 
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 353 NLQNELND----DKYVHSSRLYNLVNDQLQHWNVEVERYKALTDSLLID---RSLVLRRE 405
           ++Q EL        Y +   L  LV   +   N +   + A       +   + L+  R 
Sbjct: 229 SIQAELRRLLKSKPYENC--L--LVLLNV--QNAKA--WNAF------NLSCKILLTTRF 274

Query: 406 KEINVRAESADAARNTVDDSESRIERLEVQLQKSIIEKNDLGLKM----EEAIQDSGRKD 461
           K++    +   AA  T    +     L     KS++ K  L  +      E +  + R+ 
Sbjct: 275 KQV---TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRR- 329

Query: 462 IKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKVSLSA-KTNEQKRLTD 520
           +      + +   ++     A  + WK    + L+       ++ SL+  +  E +++ D
Sbjct: 330 LS-----IIAESIRDG---LATWDNWKHVNCDKLT-----TIIESSLNVLEPAEYRKMFD 376

Query: 521 KCVEQMAEIKSLKALIEKLQKD-KLESQIMLDMY--GQEGRDPRDLME--IKES--ERRA 573
           +              +        + + + L +        D   ++    K S  E++ 
Sbjct: 377 RLS------------V--FPPSAHIPTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 574 HSQAEVLKNALDEHSLELRVKAANEAEAACQQRLSAAEAEIIELVAKLDASERDVMELEE 633
                 +       S+ L +K   E E A  +        I++        + D +    
Sbjct: 422 KESTISI------PSIYLELKVKLENEYALHRS-------IVDHYNIPKTFDSDDL---- 464

Query: 634 AMKSKDREAEAYIAEMETIGQAFEDMQTQNQHLLQ-QVAERDDLNIKLVSESVKTKQVQS 692
                    + Y      IG           HL   +  ER  L   +            
Sbjct: 465 ---IPPYL-DQYFYSH--IGH----------HLKNIEHPERMTLFRMV------------ 496

Query: 693 FLLSEKQALARQLQQINALVESAKLRILHAEEQMKACLTEALRYNSEDRHLAVNLETTKW 752
           FL                       R L    + K      +R++S   + + ++  T  
Sbjct: 497 FL---------------------DFRFL----EQK------IRHDSTAWNASGSILNT-- 523

Query: 753 ELADAEKELKWLKSAVTSSDKEYEQIQRKTEDMRKELENE--RNERKKL-EEELMEVNNK 809
            L      LK+ K  +  +D +YE++     D   ++E     ++   L    LM  +  
Sbjct: 524 -LQQ----LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578

Query: 810 VAELTSETGEAA--IQK 824
           + E      EA   +Q+
Sbjct: 579 IFE------EAHKQVQR 589
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117 Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85 Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68 Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58 Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112 Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115 Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64 Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133 Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165 Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55 Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63 Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79 Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68 Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 890
d1rmda286 g.44.1.1 (A:1-86) V(D)J recombination activating p 3e-16
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 8e-12
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 6e-11
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 8e-10
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 2e-08
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 1e-07
d1ur6b_52 g.44.1.1 (B:) Not-4 N-terminal RING finger domain 2e-07
d1t1ha_78 g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre 1e-06
d1iyma_55 g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati 3e-06
d1jm7b_97 g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie 8e-06
d2c2la280 g.44.1.2 (A:225-304) STIP1 homology and U box-cont 7e-05
d3dplr188 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S 7e-05
d1vyxa_60 g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do 3e-04
d1v87a_114 g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou 9e-04
d1wima_94 g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016 0.004
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.3 bits (177), Expect = 3e-16
 Identities = 18/60 (30%), Positives = 25/60 (41%)

Query: 827 DEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRHRKCPGCGTAFGQSDVR 886
           D        + C +C     + V T C HLFC  CI R L++    CP C      +D+ 
Sbjct: 15  DFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60 Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114 Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query890
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 99.18
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 99.08
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.94
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 98.92
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 98.91
d2c2la280 STIP1 homology and U box-containing protein 1, STU 98.9
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 98.7
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 98.7
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 98.67
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 98.51
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 98.5
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.47
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 98.41
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 98.2
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 98.13
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 97.57
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 97.35
d2cs3a180 Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [ 92.47
d1zbdb_124 Effector domain of rabphilin-3a {Rat (Rattus norve 87.73
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=9.7e-12  Score=102.53  Aligned_cols=66  Identities=30%  Similarity=0.672  Sum_probs=54.4

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf             87986841457451222213447862145888445877888732188--8755777576889963345
Q 002710          824 KLQDEIKDCKAILKCGVCFDRPKEVVITKCFHLFCNPCIQRNLEIRH--RKCPGCGTAFGQSDVRFVK  889 (890)
Q Consensus       824 ~l~~e~~~~~~~l~C~iC~~~~~~~~~~~CgH~fC~~C~~~~~~~~~--~~CP~C~~~~~~~d~~~~~  889 (890)
                      .+..-+..+...+.||||++.|.+|++++|||+||..||..|+....  ..||.||..|...++.+++
T Consensus        10 ~~~~~~~~l~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~   77 (103)
T d1jm7a_          10 EVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST   77 (103)
T ss_dssp             HHHHHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCC
T ss_pred             HHHHHHHHCCCCCCCCCCCCHHCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCH
T ss_conf             99999996635849972182318918837998641678999999779998096988838755287578
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure